Query 045672
Match_columns 643
No_of_seqs 773 out of 4327
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 07:08:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045672.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045672hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.3E-41 4.6E-46 372.8 41.7 461 34-504 79-580 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.9E-35 6.4E-40 324.0 31.5 445 36-486 114-596 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 1.5E-25 5.1E-30 231.4 40.4 371 47-489 7-388 (388)
4 4g26_A Pentatricopeptide repea 99.9 8.6E-27 2.9E-31 245.5 23.0 182 239-421 27-223 (501)
5 1w3b_A UDP-N-acetylglucosamine 99.9 2.6E-24 8.8E-29 222.1 39.3 325 38-399 32-366 (388)
6 4g26_A Pentatricopeptide repea 99.9 6.9E-27 2.4E-31 246.2 17.8 209 57-287 8-224 (501)
7 2gw1_A Mitochondrial precursor 99.9 7.6E-23 2.6E-27 219.2 31.7 433 39-477 6-486 (514)
8 2gw1_A Mitochondrial precursor 99.9 2.7E-22 9.3E-27 214.8 33.4 425 74-504 6-479 (514)
9 3fp2_A TPR repeat-containing p 99.9 1.1E-21 3.7E-26 211.6 38.0 423 38-504 24-492 (537)
10 2y4t_A DNAJ homolog subfamily 99.9 5.5E-21 1.9E-25 201.1 33.6 305 139-483 25-372 (450)
11 2y4t_A DNAJ homolog subfamily 99.9 8.4E-21 2.9E-25 199.7 33.9 363 73-493 25-444 (450)
12 3ieg_A DNAJ homolog subfamily 99.8 1E-17 3.5E-22 169.9 34.3 294 206-503 2-335 (359)
13 3fp2_A TPR repeat-containing p 99.8 3.8E-18 1.3E-22 183.7 30.7 407 38-478 58-500 (537)
14 3ieg_A DNAJ homolog subfamily 99.8 1.9E-17 6.5E-22 167.9 32.3 308 139-486 2-352 (359)
15 3hym_B Cell division cycle pro 99.8 3.4E-17 1.2E-21 164.1 29.5 285 204-490 19-321 (330)
16 2ooe_A Cleavage stimulation fa 99.8 7.6E-16 2.6E-20 165.4 40.5 393 73-503 12-492 (530)
17 3hym_B Cell division cycle pro 99.8 1.2E-16 4.3E-21 160.0 28.8 263 236-502 20-298 (330)
18 1fch_A Peroxisomal targeting s 99.8 4.5E-17 1.5E-21 166.2 24.7 280 217-499 35-355 (368)
19 2xm6_A Protein corresponding t 99.8 3.7E-15 1.3E-19 158.4 39.4 378 57-486 25-452 (490)
20 2ooe_A Cleavage stimulation fa 99.7 4.8E-15 1.6E-19 159.2 37.7 407 38-472 12-495 (530)
21 1b89_A Protein (clathrin heavy 99.7 9.7E-17 3.3E-21 161.1 22.5 350 86-504 15-386 (449)
22 1b89_A Protein (clathrin heavy 99.7 5.1E-18 1.7E-22 170.4 10.7 252 218-498 14-267 (449)
23 4eqf_A PEX5-related protein; a 99.7 3.3E-16 1.1E-20 159.7 23.4 260 237-499 64-352 (365)
24 4g1t_A Interferon-induced prot 99.7 1.1E-15 3.7E-20 161.7 28.1 365 110-514 52-470 (472)
25 2xm6_A Protein corresponding t 99.7 3.8E-14 1.3E-18 150.6 39.0 361 94-505 27-434 (490)
26 3cv0_A Peroxisome targeting si 99.7 8.7E-16 3E-20 153.5 24.1 258 239-500 22-312 (327)
27 1xi4_A Clathrin heavy chain; a 99.7 1.4E-13 4.7E-18 153.7 42.7 380 76-496 987-1377(1630)
28 1fch_A Peroxisomal targeting s 99.7 7.1E-16 2.4E-20 157.2 21.6 275 220-503 14-314 (368)
29 3mkr_A Coatomer subunit epsilo 99.7 5.9E-15 2E-19 144.8 27.0 249 82-365 7-263 (291)
30 3mkr_A Coatomer subunit epsilo 99.7 1.3E-14 4.3E-19 142.5 29.1 266 216-495 8-286 (291)
31 4eqf_A PEX5-related protein; a 99.7 5.3E-16 1.8E-20 158.1 19.5 230 272-503 64-310 (365)
32 1xi4_A Clathrin heavy chain; a 99.7 1.4E-12 4.8E-17 145.7 45.7 429 37-498 837-1340(1630)
33 3spa_A Mtrpol, DNA-directed RN 99.7 8.8E-17 3E-21 173.7 10.0 131 303-434 124-262 (1134)
34 3cv0_A Peroxisome targeting si 99.6 5.2E-15 1.8E-19 147.9 19.7 261 207-471 21-317 (327)
35 4g1t_A Interferon-induced prot 99.6 9.2E-14 3.2E-18 146.8 30.1 377 74-481 51-471 (472)
36 3spa_A Mtrpol, DNA-directed RN 99.6 1.3E-15 4.5E-20 164.7 9.8 147 337-488 127-286 (1134)
37 3uq3_A Heat shock protein STI1 99.6 1.6E-13 5.4E-18 131.8 22.4 219 239-503 6-236 (258)
38 3uq3_A Heat shock protein STI1 99.6 9.7E-14 3.3E-18 133.3 20.5 238 207-482 5-255 (258)
39 2pl2_A Hypothetical conserved 99.6 1.3E-13 4.5E-18 129.0 20.8 195 303-501 2-212 (217)
40 1xnf_A Lipoprotein NLPI; TPR, 99.6 2.1E-13 7.2E-18 132.5 20.8 240 250-497 17-269 (275)
41 3u4t_A TPR repeat-containing p 99.5 6.7E-13 2.3E-17 128.8 21.4 243 209-488 5-269 (272)
42 3e4b_A ALGK; tetratricopeptide 99.5 5.8E-12 2E-16 131.8 26.9 368 80-501 9-419 (452)
43 2ho1_A Type 4 fimbrial biogene 99.5 6.4E-12 2.2E-16 120.3 25.2 203 238-476 37-245 (252)
44 2vq2_A PILW, putative fimbrial 99.5 5.5E-12 1.9E-16 118.1 23.3 196 306-503 8-211 (225)
45 2ho1_A Type 4 fimbrial biogene 99.5 4.1E-12 1.4E-16 121.7 22.5 197 306-504 37-239 (252)
46 2q7f_A YRRB protein; TPR, prot 99.5 1.1E-12 3.8E-17 124.7 18.3 165 312-479 63-232 (243)
47 2q7f_A YRRB protein; TPR, prot 99.5 1.6E-12 5.4E-17 123.6 18.6 197 305-504 22-223 (243)
48 2vq2_A PILW, putative fimbrial 99.5 1.5E-11 5E-16 115.2 24.3 208 237-480 7-222 (225)
49 2pl2_A Hypothetical conserved 99.5 5.3E-12 1.8E-16 118.0 20.4 191 239-434 6-211 (217)
50 3e4b_A ALGK; tetratricopeptide 99.5 8.5E-12 2.9E-16 130.5 24.0 311 146-504 9-352 (452)
51 4e6h_A MRNA 3'-END-processing 99.5 5E-10 1.7E-14 121.3 38.4 423 37-484 64-584 (679)
52 1ouv_A Conserved hypothetical 99.5 3.7E-11 1.2E-15 116.7 26.8 223 237-504 5-252 (273)
53 2h6f_A Protein farnesyltransfe 99.4 5.9E-12 2E-16 127.8 21.8 244 239-486 98-365 (382)
54 3sf4_A G-protein-signaling mod 99.4 4.2E-12 1.4E-16 130.8 21.1 259 243-502 14-335 (406)
55 4a1s_A PINS, partner of inscut 99.4 1.7E-12 5.9E-17 134.2 18.2 259 244-503 54-372 (411)
56 3ro2_A PINS homolog, G-protein 99.4 4.2E-12 1.4E-16 126.8 19.7 257 246-503 13-332 (338)
57 3u4t_A TPR repeat-containing p 99.4 9.7E-12 3.3E-16 120.5 21.3 217 285-504 15-251 (272)
58 1ouv_A Conserved hypothetical 99.4 4.3E-11 1.5E-15 116.1 25.6 226 206-474 5-256 (273)
59 3vtx_A MAMA; tetratricopeptide 99.4 1.8E-11 6.1E-16 111.0 20.7 164 336-503 4-170 (184)
60 3sf4_A G-protein-signaling mod 99.4 3.4E-12 1.2E-16 131.5 17.2 286 206-491 8-364 (406)
61 4abn_A Tetratricopeptide repea 99.4 3.4E-12 1.2E-16 134.5 16.7 206 290-499 85-317 (474)
62 4e6h_A MRNA 3'-END-processing 99.4 1.6E-09 5.6E-14 117.3 37.3 425 54-504 47-571 (679)
63 1xnf_A Lipoprotein NLPI; TPR, 99.4 1.1E-11 3.7E-16 120.2 17.7 216 284-504 16-245 (275)
64 2h6f_A Protein farnesyltransfe 99.4 1.5E-11 5.2E-16 124.7 19.3 226 273-502 97-347 (382)
65 4a1s_A PINS, partner of inscut 99.3 1.8E-11 6.2E-16 126.5 17.3 264 209-472 50-375 (411)
66 3ro2_A PINS homolog, G-protein 99.3 2.8E-11 9.4E-16 120.8 17.7 262 211-472 9-335 (338)
67 2ond_A Cleavage stimulation fa 99.3 7.4E-10 2.5E-14 109.5 27.3 216 255-474 33-275 (308)
68 3vtx_A MAMA; tetratricopeptide 99.3 1.1E-10 3.9E-15 105.6 18.6 168 304-474 3-175 (184)
69 4gyw_A UDP-N-acetylglucosamine 99.3 6.1E-11 2.1E-15 130.0 18.9 162 336-502 8-173 (723)
70 2ond_A Cleavage stimulation fa 99.3 2.7E-10 9.1E-15 112.7 21.5 211 290-504 33-271 (308)
71 3as5_A MAMA; tetratricopeptide 99.3 1.8E-10 6.3E-15 103.8 17.9 161 340-503 11-173 (186)
72 3ulq_A Response regulator aspa 99.3 1.7E-10 5.7E-15 118.2 19.5 283 217-502 22-367 (383)
73 1hz4_A MALT regulatory protein 99.3 4.2E-09 1.4E-13 107.2 29.5 223 281-503 61-322 (373)
74 3nf1_A KLC 1, kinesin light ch 99.3 2.5E-11 8.5E-16 119.9 12.5 53 450-502 254-306 (311)
75 3ulq_A Response regulator aspa 99.2 3E-10 1E-14 116.3 19.9 227 244-470 109-369 (383)
76 3q15_A PSP28, response regulat 99.2 9.9E-10 3.4E-14 112.1 20.5 298 204-502 7-364 (378)
77 3as5_A MAMA; tetratricopeptide 99.2 1E-09 3.6E-14 98.8 18.4 167 307-476 9-180 (186)
78 4i17_A Hypothetical protein; T 99.2 1.6E-09 5.6E-14 101.7 19.6 202 271-484 5-224 (228)
79 4i17_A Hypothetical protein; T 99.2 1.1E-09 3.8E-14 102.9 17.7 186 307-503 8-209 (228)
80 4abn_A Tetratricopeptide repea 99.1 8.9E-10 3E-14 115.9 18.2 190 237-431 101-315 (474)
81 3nf1_A KLC 1, kinesin light ch 99.1 1.8E-10 6.3E-15 113.6 11.0 234 207-472 27-310 (311)
82 3q15_A PSP28, response regulat 99.1 1.1E-08 3.6E-13 104.4 23.9 223 247-469 110-365 (378)
83 1hz4_A MALT regulatory protein 99.1 4.7E-08 1.6E-12 99.3 26.6 258 213-471 20-324 (373)
84 3edt_B KLC 2, kinesin light ch 99.0 3E-09 1E-13 103.1 15.5 219 284-502 12-280 (283)
85 1qqe_A Vesicular transport pro 99.0 9.1E-09 3.1E-13 100.8 17.4 165 309-473 80-273 (292)
86 4gyw_A UDP-N-acetylglucosamine 99.0 3.7E-09 1.3E-13 115.9 15.8 162 305-470 8-175 (723)
87 3qky_A Outer membrane assembly 99.0 4.5E-08 1.6E-12 93.9 21.4 204 305-549 14-247 (261)
88 1qqe_A Vesicular transport pro 98.9 1.2E-08 4E-13 100.0 15.7 227 256-500 3-266 (292)
89 3mv2_B Coatomer subunit epsilo 98.9 9.5E-08 3.3E-12 92.0 21.3 174 325-503 85-282 (310)
90 2fo7_A Synthetic consensus TPR 98.9 2.5E-08 8.6E-13 84.1 15.2 93 410-502 37-131 (136)
91 3edt_B KLC 2, kinesin light ch 98.9 3.4E-08 1.2E-12 95.5 17.9 163 307-469 86-281 (283)
92 2fo7_A Synthetic consensus TPR 98.9 4.1E-08 1.4E-12 82.8 16.0 131 339-472 3-135 (136)
93 3qky_A Outer membrane assembly 98.9 3.1E-08 1E-12 95.1 16.8 201 271-491 13-249 (261)
94 2yhc_A BAMD, UPF0169 lipoprote 98.9 1.4E-07 4.6E-12 88.3 20.4 179 307-505 5-215 (225)
95 3mv2_B Coatomer subunit epsilo 98.9 2.1E-07 7.2E-12 89.6 21.4 239 217-476 23-289 (310)
96 4ga2_A E3 SUMO-protein ligase 98.9 2.2E-09 7.7E-14 93.4 6.9 140 346-489 6-149 (150)
97 3qou_A Protein YBBN; thioredox 98.9 8.4E-08 2.9E-12 93.5 17.8 175 322-501 102-282 (287)
98 2pzi_A Probable serine/threoni 98.8 1.4E-08 4.7E-13 111.8 12.8 169 317-489 402-583 (681)
99 3rjv_A Putative SEL1 repeat pr 98.8 3.1E-07 1.1E-11 85.0 19.2 172 325-505 5-199 (212)
100 2vsy_A XCC0866; transferase, g 98.8 8.6E-08 3E-12 103.4 15.9 160 319-481 2-169 (568)
101 2ifu_A Gamma-SNAP; membrane fu 98.7 2.9E-07 1E-11 90.6 17.6 220 251-496 4-254 (307)
102 2r5s_A Uncharacterized protein 98.7 1.2E-07 4E-12 84.9 13.2 76 427-502 93-172 (176)
103 2pzi_A Probable serine/threoni 98.7 4.3E-07 1.5E-11 99.9 19.1 188 284-476 402-609 (681)
104 2vsy_A XCC0866; transferase, g 98.7 2.8E-07 9.5E-12 99.4 17.2 146 286-434 2-154 (568)
105 4ga2_A E3 SUMO-protein ligase 98.7 3.5E-08 1.2E-12 85.8 8.0 121 379-502 4-128 (150)
106 2uy1_A Cleavage stimulation fa 98.7 6E-06 2E-10 86.7 26.4 79 88-168 28-117 (493)
107 3urz_A Uncharacterized protein 98.7 4.7E-07 1.6E-11 83.5 16.0 126 343-473 60-190 (208)
108 3gyz_A Chaperone protein IPGC; 98.7 1.7E-07 5.8E-12 81.2 11.6 102 403-504 30-134 (151)
109 2yhc_A BAMD, UPF0169 lipoprote 98.6 6.6E-07 2.2E-11 83.6 15.2 181 273-474 4-218 (225)
110 4gco_A Protein STI-1; structur 98.6 4E-07 1.4E-11 76.3 12.3 108 374-483 15-124 (126)
111 3u3w_A Transcriptional activat 98.6 4.9E-06 1.7E-10 81.2 22.0 160 343-502 81-265 (293)
112 1hh8_A P67PHOX, NCF-2, neutrop 98.6 8.7E-07 3E-11 81.7 15.7 123 377-504 11-151 (213)
113 2r5s_A Uncharacterized protein 98.6 5.5E-07 1.9E-11 80.5 13.5 156 309-468 9-172 (176)
114 2vgx_A Chaperone SYCD; alterna 98.6 1.4E-07 4.8E-12 81.6 9.1 97 407-503 20-118 (148)
115 1hh8_A P67PHOX, NCF-2, neutrop 98.6 1.8E-06 6.3E-11 79.5 17.3 144 310-473 10-154 (213)
116 2uy1_A Cleavage stimulation fa 98.6 4.6E-06 1.6E-10 87.6 22.0 368 87-502 7-412 (493)
117 3qou_A Protein YBBN; thioredox 98.6 1.7E-06 6E-11 84.1 17.5 159 273-432 117-279 (287)
118 3dra_A Protein farnesyltransfe 98.6 3.8E-05 1.3E-09 74.6 26.4 222 252-478 47-297 (306)
119 3dra_A Protein farnesyltransfe 98.6 9.8E-06 3.4E-10 78.7 22.2 211 289-502 49-286 (306)
120 3urz_A Uncharacterized protein 98.6 2E-06 6.9E-11 79.1 16.4 182 243-448 9-198 (208)
121 1a17_A Serine/threonine protei 98.5 1.2E-06 4.2E-11 76.9 14.1 126 375-502 16-145 (166)
122 1na0_A Designed protein CTPR3; 98.5 1.3E-06 4.6E-11 72.1 13.7 114 373-488 10-125 (125)
123 4gco_A Protein STI-1; structur 98.5 7E-07 2.4E-11 74.7 11.8 100 404-503 8-110 (126)
124 2qfc_A PLCR protein; TPR, HTH, 98.5 3E-06 1E-10 82.7 18.2 164 339-502 77-265 (293)
125 2c2l_A CHIP, carboxy terminus 98.5 2.2E-07 7.6E-12 90.1 9.1 190 306-503 4-199 (281)
126 2vyi_A SGTA protein; chaperone 98.5 1.5E-06 5E-11 72.6 13.1 117 373-491 13-131 (131)
127 2xcb_A PCRH, regulatory protei 98.5 1.5E-06 5.2E-11 74.4 13.2 96 408-503 18-115 (142)
128 2lni_A Stress-induced-phosphop 98.5 1.5E-06 5.2E-11 72.9 12.7 116 372-489 16-133 (133)
129 2ifu_A Gamma-SNAP; membrane fu 98.5 8.4E-07 2.9E-11 87.3 12.5 195 286-501 4-222 (307)
130 2qfc_A PLCR protein; TPR, HTH, 98.4 6.8E-06 2.3E-10 80.1 17.4 162 308-469 77-266 (293)
131 1p5q_A FKBP52, FK506-binding p 98.4 1.9E-06 6.6E-11 85.8 13.4 144 336-501 146-292 (336)
132 2e2e_A Formate-dependent nitri 98.4 7.1E-07 2.4E-11 79.7 9.2 120 383-504 21-145 (177)
133 3upv_A Heat shock protein STI1 98.4 1.9E-06 6.4E-11 72.0 11.0 96 408-503 4-101 (126)
134 3rjv_A Putative SEL1 repeat pr 98.4 1.3E-05 4.6E-10 73.8 17.7 161 305-472 17-200 (212)
135 2kck_A TPR repeat; tetratricop 98.4 2.7E-06 9.3E-11 68.8 10.7 98 407-504 5-107 (112)
136 3u3w_A Transcriptional activat 98.4 2.7E-05 9.2E-10 75.8 19.8 93 308-400 157-265 (293)
137 4f3v_A ESX-1 secretion system 98.4 1.2E-06 4E-11 83.2 9.5 134 342-480 107-247 (282)
138 3q49_B STIP1 homology and U bo 98.3 5E-06 1.7E-10 70.3 12.2 98 406-503 7-106 (137)
139 1hxi_A PEX5, peroxisome target 98.3 2.3E-06 7.7E-11 71.0 9.3 94 410-503 19-114 (121)
140 1elw_A TPR1-domain of HOP; HOP 98.3 1.2E-05 4E-10 65.6 13.5 107 375-483 7-115 (118)
141 2e2e_A Formate-dependent nitri 98.3 4.8E-06 1.6E-10 74.2 11.9 127 348-477 21-152 (177)
142 3sz7_A HSC70 cochaperone (SGT) 98.3 3.8E-06 1.3E-10 73.8 10.9 96 408-503 11-108 (164)
143 3gw4_A Uncharacterized protein 98.3 6.5E-06 2.2E-10 74.9 12.9 83 318-400 4-94 (203)
144 4f3v_A ESX-1 secretion system 98.3 7.7E-06 2.6E-10 77.6 13.4 182 318-504 18-238 (282)
145 2fbn_A 70 kDa peptidylprolyl i 98.3 6.1E-06 2.1E-10 75.1 12.4 172 312-504 10-187 (198)
146 1na0_A Designed protein CTPR3; 98.3 7.1E-06 2.4E-10 67.6 11.8 96 408-503 9-106 (125)
147 3gw4_A Uncharacterized protein 98.3 3E-05 1E-09 70.5 17.1 125 309-433 29-172 (203)
148 2vgx_A Chaperone SYCD; alterna 98.3 1.9E-06 6.4E-11 74.4 8.3 103 373-477 22-126 (148)
149 1elw_A TPR1-domain of HOP; HOP 98.3 7.1E-06 2.4E-10 66.9 11.5 97 408-504 4-102 (118)
150 1a17_A Serine/threonine protei 98.3 1.7E-05 5.7E-10 69.4 14.3 128 338-468 14-145 (166)
151 2lni_A Stress-induced-phosphop 98.3 7.1E-06 2.4E-10 68.7 11.1 118 35-154 12-132 (133)
152 2dba_A Smooth muscle cell asso 98.2 1E-05 3.5E-10 69.2 12.4 95 408-502 28-127 (148)
153 4gcn_A Protein STI-1; structur 98.2 8.2E-06 2.8E-10 68.2 10.1 94 409-502 9-111 (127)
154 3upv_A Heat shock protein STI1 98.2 1.6E-05 5.6E-10 66.1 11.9 109 374-484 6-122 (126)
155 2dba_A Smooth muscle cell asso 98.2 3.3E-05 1.1E-09 65.9 14.2 111 373-486 29-145 (148)
156 2xcb_A PCRH, regulatory protei 98.2 1.1E-05 3.6E-10 69.0 10.7 105 374-480 20-126 (142)
157 3q7a_A Farnesyltransferase alp 98.2 0.00095 3.3E-08 65.5 25.6 173 246-423 62-257 (349)
158 3sz7_A HSC70 cochaperone (SGT) 98.2 2.1E-05 7.4E-10 68.9 12.9 108 372-481 11-120 (164)
159 2vyi_A SGTA protein; chaperone 98.2 1.5E-05 5.1E-10 66.3 11.4 97 407-503 11-109 (131)
160 3gyz_A Chaperone protein IPGC; 98.2 1E-05 3.5E-10 69.8 10.2 98 374-473 38-137 (151)
161 3dss_A Geranylgeranyl transfer 98.2 0.00045 1.5E-08 67.5 22.9 188 289-480 90-315 (331)
162 2c2l_A CHIP, carboxy terminus 98.2 1.7E-05 5.8E-10 76.7 12.9 181 281-470 12-200 (281)
163 2hr2_A Hypothetical protein; a 98.1 9.8E-06 3.4E-10 69.4 9.4 62 441-502 58-130 (159)
164 1wao_1 Serine/threonine protei 98.1 1.8E-05 6.2E-10 82.8 12.9 117 313-432 13-134 (477)
165 3q7a_A Farnesyltransferase alp 98.1 0.00025 8.4E-09 69.6 19.9 229 253-502 52-330 (349)
166 2xev_A YBGF; tetratricopeptide 98.1 1.4E-05 4.8E-10 66.6 9.4 91 413-503 7-105 (129)
167 3q49_B STIP1 homology and U bo 98.1 2.7E-05 9.2E-10 65.7 11.2 100 371-472 8-109 (137)
168 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 3.4E-05 1.2E-09 80.3 14.1 144 337-502 268-414 (457)
169 4b4t_Q 26S proteasome regulato 98.1 4.7E-05 1.6E-09 78.6 14.7 188 315-502 13-244 (434)
170 1elr_A TPR2A-domain of HOP; HO 98.0 1.9E-05 6.4E-10 65.7 9.5 95 409-503 5-108 (131)
171 1wao_1 Serine/threonine protei 98.0 1.4E-05 4.6E-10 83.8 10.4 116 381-498 15-134 (477)
172 3k9i_A BH0479 protein; putativ 98.0 4.4E-06 1.5E-10 68.7 5.1 83 421-503 3-90 (117)
173 3dss_A Geranylgeranyl transfer 98.0 0.00085 2.9E-08 65.5 21.8 178 322-502 90-303 (331)
174 1elr_A TPR2A-domain of HOP; HO 98.0 5.8E-05 2E-09 62.6 12.0 105 378-485 10-123 (131)
175 1p5q_A FKBP52, FK506-binding p 98.0 5.5E-05 1.9E-09 75.2 13.6 139 286-427 126-283 (336)
176 2kck_A TPR repeat; tetratricop 98.0 3.1E-05 1E-09 62.3 9.8 98 375-474 9-111 (112)
177 3rkv_A Putative peptidylprolyl 98.0 2.2E-05 7.4E-10 68.7 9.5 64 440-503 63-126 (162)
178 3ro3_A PINS homolog, G-protein 98.0 5E-05 1.7E-09 65.7 11.5 61 442-502 91-157 (164)
179 2xev_A YBGF; tetratricopeptide 98.0 0.0001 3.5E-09 61.2 12.5 99 380-480 10-116 (129)
180 2fbn_A 70 kDa peptidylprolyl i 97.9 1.7E-05 5.7E-10 72.2 7.9 141 285-428 16-176 (198)
181 4b4t_Q 26S proteasome regulato 97.9 0.00021 7.3E-09 73.6 16.5 192 214-434 11-242 (434)
182 4gcn_A Protein STI-1; structur 97.9 0.00017 5.7E-09 60.1 12.6 104 338-471 9-114 (127)
183 3n71_A Histone lysine methyltr 97.9 0.00014 4.9E-09 75.6 14.5 124 382-505 319-466 (490)
184 1hxi_A PEX5, peroxisome target 97.9 7.7E-05 2.6E-09 61.5 10.0 94 378-473 23-118 (121)
185 1ihg_A Cyclophilin 40; ppiase 97.9 8.9E-05 3.1E-09 74.6 12.1 137 337-495 223-362 (370)
186 2hr2_A Hypothetical protein; a 97.8 4.1E-05 1.4E-09 65.6 8.0 69 410-478 59-140 (159)
187 3ro3_A PINS homolog, G-protein 97.8 8.9E-05 3.1E-09 64.1 10.6 131 340-470 12-159 (164)
188 2if4_A ATFKBP42; FKBP-like, al 97.8 4.4E-05 1.5E-09 76.0 9.2 147 337-503 179-328 (338)
189 3rkv_A Putative peptidylprolyl 97.8 7.7E-05 2.6E-09 65.2 9.1 128 337-483 11-141 (162)
190 3k9i_A BH0479 protein; putativ 97.8 2.9E-05 1E-09 63.6 5.7 92 385-477 3-98 (117)
191 1dce_A Protein (RAB geranylger 97.8 0.0015 5.1E-08 69.6 20.3 171 319-492 42-244 (567)
192 3ma5_A Tetratricopeptide repea 97.8 0.00012 4E-09 58.0 8.9 65 439-503 6-70 (100)
193 2l6j_A TPR repeat-containing p 97.8 6.4E-05 2.2E-09 60.5 7.5 92 407-498 3-102 (111)
194 2if4_A ATFKBP42; FKBP-like, al 97.8 6.9E-05 2.4E-09 74.5 9.2 152 306-474 179-333 (338)
195 1na3_A Designed protein CTPR2; 97.7 0.00018 6E-09 55.4 9.0 81 408-488 9-91 (91)
196 3n71_A Histone lysine methyltr 97.7 0.00016 5.4E-09 75.2 10.7 115 417-549 318-450 (490)
197 2kat_A Uncharacterized protein 97.6 0.00024 8.3E-09 57.7 8.7 77 427-503 4-82 (115)
198 1kt0_A FKBP51, 51 kDa FK506-bi 97.6 0.00044 1.5E-08 71.9 12.6 95 410-504 270-381 (457)
199 3qwp_A SET and MYND domain-con 97.6 0.00026 8.9E-09 72.5 10.6 116 415-548 294-427 (429)
200 3bee_A Putative YFRE protein; 97.5 0.00067 2.3E-08 52.6 9.0 69 438-506 4-75 (93)
201 1zu2_A Mitochondrial import re 97.4 0.0001 3.5E-09 63.0 4.5 85 420-504 14-121 (158)
202 1ihg_A Cyclophilin 40; ppiase 97.4 0.001 3.5E-08 66.8 12.6 117 309-429 226-362 (370)
203 3qww_A SET and MYND domain-con 97.4 0.00025 8.6E-09 72.4 8.0 102 421-540 311-430 (433)
204 2l6j_A TPR repeat-containing p 97.4 0.00051 1.7E-08 55.0 7.9 66 439-504 3-68 (111)
205 1klx_A Cysteine rich protein B 97.2 0.0034 1.2E-07 52.8 11.7 50 453-504 74-127 (138)
206 1na3_A Designed protein CTPR2; 97.2 0.0012 4E-08 50.5 7.8 64 440-503 9-72 (91)
207 1dce_A Protein (RAB geranylger 97.1 0.0081 2.8E-07 63.9 15.7 150 350-503 42-221 (567)
208 1klx_A Cysteine rich protein B 97.1 0.0089 3E-07 50.2 12.9 112 351-471 9-128 (138)
209 2kat_A Uncharacterized protein 97.1 0.0024 8.1E-08 51.6 8.9 80 391-472 4-85 (115)
210 1zu2_A Mitochondrial import re 97.0 0.00041 1.4E-08 59.2 4.0 50 425-474 63-125 (158)
211 3ly7_A Transcriptional activat 97.0 0.015 5E-07 57.0 15.0 47 334-382 191-243 (372)
212 3qww_A SET and MYND domain-con 96.9 0.0058 2E-07 62.4 11.7 94 384-477 310-424 (433)
213 1wy6_A Hypothetical protein ST 96.8 0.068 2.3E-06 43.2 14.7 141 347-506 17-157 (172)
214 3qwp_A SET and MYND domain-con 96.8 0.011 3.6E-07 60.5 12.7 98 382-479 297-415 (429)
215 2kc7_A BFR218_protein; tetratr 96.7 0.0034 1.2E-07 48.9 7.0 53 450-502 10-63 (99)
216 3ma5_A Tetratricopeptide repea 96.7 0.0074 2.5E-07 47.3 8.8 64 336-400 6-69 (100)
217 2kc7_A BFR218_protein; tetratr 96.7 0.0084 2.9E-07 46.6 9.0 64 414-477 6-72 (99)
218 1pc2_A Mitochondria fission pr 96.5 0.014 4.7E-07 49.2 9.6 65 438-502 30-99 (152)
219 3mkq_A Coatomer beta'-subunit; 96.4 0.12 4E-06 57.8 19.7 100 119-266 609-709 (814)
220 3mkq_A Coatomer beta'-subunit; 96.4 0.11 3.7E-06 58.0 19.2 101 316-434 662-762 (814)
221 3u64_A Protein TP_0956; tetrat 95.8 0.03 1E-06 52.6 8.8 86 424-509 179-275 (301)
222 2v5f_A Prolyl 4-hydroxylase su 95.7 0.069 2.4E-06 42.0 9.6 73 408-480 5-86 (104)
223 3ly7_A Transcriptional activat 95.5 0.35 1.2E-05 47.4 15.3 71 336-411 276-346 (372)
224 1qsa_A Protein (soluble lytic 95.5 3.2 0.00011 44.1 24.1 246 212-468 77-347 (618)
225 3mkq_B Coatomer subunit alpha; 95.4 0.38 1.3E-05 41.5 13.7 128 315-466 14-141 (177)
226 3bee_A Putative YFRE protein; 95.1 0.16 5.3E-06 39.0 9.2 70 405-474 3-77 (93)
227 1pc2_A Mitochondria fission pr 95.0 0.094 3.2E-06 44.1 8.4 35 442-476 73-107 (152)
228 3lvg_A Clathrin heavy chain 1; 94.7 0.17 5.7E-06 51.0 10.4 211 205-431 261-535 (624)
229 3lvg_A Clathrin heavy chain 1; 94.4 0.0036 1.2E-07 62.6 -2.1 236 108-357 53-324 (624)
230 1nzn_A CGI-135 protein, fissio 94.2 0.24 8.4E-06 40.0 8.7 44 459-502 57-102 (126)
231 4gns_B Protein CSD3, chitin bi 93.4 0.27 9.4E-06 53.2 9.9 54 448-501 345-398 (754)
232 1wy6_A Hypothetical protein ST 93.3 2.8 9.4E-05 34.1 15.5 139 249-405 18-157 (172)
233 1y8m_A FIS1; mitochondria, unk 93.2 3 0.0001 34.3 13.4 65 438-502 37-105 (144)
234 2v5f_A Prolyl 4-hydroxylase su 92.8 0.39 1.3E-05 37.5 7.8 65 439-503 4-75 (104)
235 1nzn_A CGI-135 protein, fissio 91.8 1.4 4.7E-05 35.6 9.7 72 406-477 33-111 (126)
236 3u64_A Protein TP_0956; tetrat 91.3 1 3.6E-05 42.2 9.7 80 290-369 180-272 (301)
237 4h7y_A Dual specificity protei 90.7 0.52 1.8E-05 39.1 6.2 52 453-504 73-124 (161)
238 4h7y_A Dual specificity protei 90.5 2 7E-05 35.6 9.5 54 422-475 74-129 (161)
239 3mkq_B Coatomer subunit alpha; 89.7 9.1 0.00031 32.9 17.4 109 306-435 34-142 (177)
240 4b4t_P 26S proteasome regulato 89.3 20 0.00069 36.2 20.6 254 53-335 30-324 (445)
241 2ff4_A Probable regulatory pro 88.6 1 3.4E-05 45.1 7.9 66 444-509 175-245 (388)
242 3o48_A Mitochondria fission 1 88.0 2.4 8.1E-05 34.4 8.1 46 457-502 60-106 (134)
243 2wpv_A GET4, UPF0363 protein Y 87.7 19 0.00066 34.2 20.8 168 208-401 34-217 (312)
244 4ady_A RPN2, 26S proteasome re 87.3 40 0.0014 37.4 31.9 246 217-467 384-656 (963)
245 3lpz_A GET4 (YOR164C homolog); 87.3 21 0.00073 34.2 20.3 166 209-400 37-215 (336)
246 3lpz_A GET4 (YOR164C homolog); 86.6 23 0.00079 33.9 19.2 131 111-252 37-181 (336)
247 1v54_E Cytochrome C oxidase po 86.3 4.8 0.00016 30.7 8.3 63 54-117 25-87 (109)
248 1v54_E Cytochrome C oxidase po 85.8 4.4 0.00015 30.9 7.8 63 352-416 25-87 (109)
249 2qx5_A Nucleoporin NIC96; mRNA 85.3 16 0.00054 38.9 15.0 78 244-332 300-382 (661)
250 2uwj_G Type III export protein 84.5 11 0.00039 28.5 10.2 90 86-180 18-107 (115)
251 2p58_C Putative type III secre 84.1 12 0.00041 28.4 10.1 90 86-180 19-108 (116)
252 3txn_A 26S proteasome regulato 83.7 28 0.00094 34.4 15.2 22 343-364 105-126 (394)
253 2ff4_A Probable regulatory pro 83.7 7.7 0.00026 38.6 11.4 70 341-411 175-248 (388)
254 3ffl_A Anaphase-promoting comp 83.6 6.2 0.00021 33.4 8.9 23 413-435 127-149 (167)
255 3ffl_A Anaphase-promoting comp 81.9 9.8 0.00034 32.2 9.4 69 34-102 15-91 (167)
256 4gns_B Protein CSD3, chitin bi 81.6 17 0.00058 39.4 13.7 52 382-435 347-398 (754)
257 2wpv_A GET4, UPF0363 protein Y 80.5 40 0.0014 32.0 18.4 168 309-502 36-216 (312)
258 2y69_E Cytochrome C oxidase su 79.6 11 0.00036 30.5 8.3 63 54-117 68-130 (152)
259 2y69_E Cytochrome C oxidase su 79.4 9.2 0.00031 30.9 7.8 63 352-416 68-130 (152)
260 2uwj_G Type III export protein 73.3 28 0.00095 26.4 9.6 61 315-378 48-108 (115)
261 3o48_A Mitochondria fission 1 73.3 24 0.00083 28.5 9.0 30 445-474 83-112 (134)
262 4ady_A RPN2, 26S proteasome re 73.1 1.2E+02 0.0041 33.7 26.5 232 210-445 414-666 (963)
263 1qsa_A Protein (soluble lytic 73.0 99 0.0034 32.7 34.6 437 42-507 10-483 (618)
264 3mv2_A Coatomer subunit alpha; 72.9 45 0.0015 31.6 12.1 60 430-503 195-256 (325)
265 2p58_C Putative type III secre 72.3 30 0.001 26.3 10.0 61 315-378 49-109 (116)
266 4fhn_B Nucleoporin NUP120; pro 71.8 28 0.00095 40.2 12.9 123 377-505 817-969 (1139)
267 4b4t_P 26S proteasome regulato 71.5 89 0.003 31.4 23.1 95 340-434 140-244 (445)
268 4fhn_B Nucleoporin NUP120; pro 71.4 61 0.0021 37.4 15.6 120 304-426 840-989 (1139)
269 1y8m_A FIS1; mitochondria, unk 71.0 42 0.0014 27.5 11.5 70 406-475 37-112 (144)
270 2qx5_A Nucleoporin NIC96; mRNA 69.7 64 0.0022 34.3 13.9 44 41-86 155-198 (661)
271 1zbp_A Hypothetical protein VP 69.4 9 0.00031 35.4 6.4 58 416-473 5-64 (273)
272 1zbp_A Hypothetical protein VP 67.0 79 0.0027 29.1 12.8 53 347-400 7-59 (273)
273 3esl_A Checkpoint serine/threo 64.1 64 0.0022 28.2 10.4 105 425-555 61-171 (202)
274 2nsz_A Programmed cell death p 63.2 37 0.0013 27.3 8.4 64 113-176 11-79 (129)
275 3ltm_A Alpha-REP4; protein eng 61.5 81 0.0028 27.4 18.1 154 72-266 31-184 (211)
276 2zu6_B Programmed cell death p 60.8 1.1E+02 0.0039 28.8 13.3 23 78-100 7-29 (307)
277 3ltj_A Alpharep-4; protein eng 58.2 90 0.0031 26.8 17.6 61 205-266 119-179 (201)
278 1wdy_A 2-5A-dependent ribonucl 57.3 1.1E+02 0.0038 27.7 13.2 58 214-272 152-213 (285)
279 3txn_A 26S proteasome regulato 57.0 1.5E+02 0.0052 29.1 26.9 280 210-506 22-346 (394)
280 4b4t_R RPN7, 26S proteasome re 56.3 50 0.0017 33.1 10.0 96 308-403 133-239 (429)
281 4b4t_R RPN7, 26S proteasome re 55.9 25 0.00085 35.4 7.6 57 411-467 134-195 (429)
282 3ltm_A Alpha-REP4; protein eng 55.7 1E+02 0.0035 26.7 18.4 47 206-252 32-78 (211)
283 2ion_A PDCD4, programmed cell 54.0 37 0.0013 28.3 7.1 62 113-174 13-79 (152)
284 3ljn_A Hypothetical protein; a 49.5 46 0.0016 32.2 8.3 18 215-232 178-195 (364)
285 3eu9_A Huntingtin-interacting 49.2 45 0.0015 29.6 7.7 113 49-174 16-136 (240)
286 2nsz_A Programmed cell death p 48.3 70 0.0024 25.7 7.7 62 310-371 11-77 (129)
287 3ltj_A Alpharep-4; protein eng 47.4 1.3E+02 0.0046 25.6 19.0 50 204-253 25-74 (201)
288 1wdy_A 2-5A-dependent ribonucl 47.3 58 0.002 29.7 8.4 21 213-233 8-28 (285)
289 4a1g_A Mitotic checkpoint seri 45.9 1.3E+02 0.0044 25.0 9.3 80 425-507 52-134 (152)
290 2l0z_A Glycoprotein G2; zinc-b 44.0 7.5 0.00026 23.6 0.8 17 626-642 12-29 (42)
291 1n11_A Ankyrin; clathrin, BAND 43.7 1.8E+02 0.0062 28.6 12.0 83 46-136 18-104 (437)
292 3eiq_C Programmed cell death p 41.3 2.5E+02 0.0087 27.1 16.8 73 77-152 57-131 (358)
293 2wvi_A Mitotic checkpoint seri 40.8 1.6E+02 0.0055 24.7 9.4 80 425-507 47-129 (164)
294 2d2s_A Exocyst complex compone 40.1 85 0.0029 28.3 7.7 23 45-67 24-46 (235)
295 2ion_A PDCD4, programmed cell 38.8 59 0.002 27.0 6.0 65 210-274 12-81 (152)
296 1k1a_A B-cell lymphoma 3-encod 38.5 1.3E+02 0.0043 26.5 9.0 17 217-233 86-102 (241)
297 3hra_A Ankyrin repeat family p 38.0 1.5E+02 0.0051 25.1 9.1 57 216-272 112-172 (201)
298 3mkr_B Coatomer subunit alpha; 37.3 1.1E+02 0.0036 29.0 8.0 61 430-504 186-248 (320)
299 3esl_A Checkpoint serine/threo 37.0 2.1E+02 0.0072 24.9 9.7 49 322-370 95-148 (202)
300 2d2s_A Exocyst complex compone 34.9 1.2E+02 0.004 27.4 7.7 88 343-434 24-117 (235)
301 3hra_A Ankyrin repeat family p 33.8 1.2E+02 0.004 25.8 7.7 52 216-272 11-66 (201)
302 4a1g_A Mitotic checkpoint seri 31.7 2.2E+02 0.0074 23.6 8.1 45 356-400 84-129 (152)
303 3b7b_A Euchromatic histone-lys 31.7 2E+02 0.0069 25.1 9.2 113 48-174 17-138 (237)
304 1bpo_A Protein (clathrin); cla 31.2 3.4E+02 0.012 27.2 10.7 25 73-97 360-384 (494)
305 4gq2_M Nucleoporin NUP120; bet 29.9 4.7E+02 0.016 29.2 13.3 85 378-468 816-925 (950)
306 4b4t_S RPN3, 26S proteasome re 28.1 2.4E+02 0.0083 28.8 9.4 118 40-161 232-362 (523)
307 1k1a_A B-cell lymphoma 3-encod 27.7 3E+02 0.01 23.9 10.1 86 46-135 13-102 (241)
308 3eiq_C Programmed cell death p 27.5 1.8E+02 0.0062 28.1 8.1 25 42-66 57-81 (358)
309 2r9g_A AAA ATPase, central reg 27.1 2.6E+02 0.009 24.3 8.0 49 142-191 13-64 (204)
310 3ygs_P Procaspase 9; apoptosis 26.3 85 0.0029 23.6 4.5 38 320-357 51-88 (97)
311 3jxi_A Vanilloid receptor-rela 24.9 74 0.0025 28.7 4.8 92 46-137 9-118 (260)
312 4b4t_S RPN3, 26S proteasome re 24.5 1.8E+02 0.0063 29.7 7.7 63 372-434 231-296 (523)
313 2hgo_A CASSIICOLIN; toxin, dis 23.9 17 0.00058 19.0 0.1 13 631-643 8-22 (27)
314 2zu6_B Programmed cell death p 23.8 4.6E+02 0.016 24.6 15.8 69 340-410 169-239 (307)
315 3ygs_P Procaspase 9; apoptosis 23.3 89 0.003 23.5 4.1 38 221-258 51-88 (97)
316 1ug3_A EIF4GI, eukaryotic prot 22.8 1.3E+02 0.0043 29.0 6.1 26 113-138 15-40 (339)
317 3jxi_A Vanilloid receptor-rela 22.5 1.6E+02 0.0053 26.4 6.6 53 82-134 10-71 (260)
318 2ijq_A Hypothetical protein; s 22.5 2.7E+02 0.0094 23.2 7.2 60 42-102 36-103 (161)
319 2k0q_A Putative uncharacterize 22.4 32 0.0011 23.9 1.2 21 619-639 8-28 (74)
320 3l6a_A Eukaryotic translation 21.7 2.8E+02 0.0097 26.8 8.4 26 113-138 16-41 (364)
321 3aji_A 26S proteasome non-ATPa 21.6 2.3E+02 0.008 24.5 7.5 84 46-134 10-95 (231)
322 2lo3_A SAGA-associated factor 21.5 23 0.00077 21.7 0.3 10 599-608 16-25 (44)
323 3qye_A TBC1 domain family memb 21.2 5E+02 0.017 24.5 10.1 124 54-184 164-303 (331)
324 2pnn_A Transient receptor pote 21.0 1.9E+02 0.0064 26.2 6.9 100 36-137 8-126 (273)
325 2pk8_A Uncharacterized protein 20.8 42 0.0014 24.8 1.6 29 531-559 13-41 (103)
326 2p1h_A APAF-1, apoptotic prote 20.7 2E+02 0.007 21.1 5.7 66 93-162 24-89 (94)
327 2wvi_A Mitotic checkpoint seri 20.6 2.5E+02 0.0084 23.6 6.6 59 92-150 78-137 (164)
328 2fe3_A Peroxide operon regulat 20.4 1.7E+02 0.0058 23.8 5.6 69 318-386 2-70 (145)
329 4aez_C MAD3, mitotic spindle c 20.3 3.6E+02 0.012 23.9 7.9 93 223-349 100-193 (223)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.3e-41 Score=372.83 Aligned_cols=461 Identities=11% Similarity=-0.023 Sum_probs=402.3
Q ss_pred CCCCCcchHHHHHHHHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHH
Q 045672 34 TITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVN 113 (643)
Q Consensus 34 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 113 (643)
+|.+++..|+.++..|.+.|++++|+.+|++|.. ..|+..++..++.+|.+.|++++|..+|+.+... +++..+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~ 154 (597)
T 2xpi_A 79 DSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRY 154 (597)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHH
T ss_pred chHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHH
Confidence 4557888999999999999999999999999985 3678899999999999999999999999988653 67889999
Q ss_pred HHHHHHHcCCChhHHHHHHccCCCC-------------------CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC
Q 045672 114 ILLNMHVKFSLLEEAQVLFDQMPER-------------------NVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPN 174 (643)
Q Consensus 114 ~li~~~~~~g~~~~A~~~f~~m~~~-------------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 174 (643)
.++.+|.++|++++|.++|+++... +..+|+.++.+|.+.|++++|+++|++|.+. .|+
T Consensus 155 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~ 232 (597)
T 2xpi_A 155 LAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMV--DAK 232 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT
T ss_pred HHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--Cch
Confidence 9999999999999999999965433 4789999999999999999999999999976 354
Q ss_pred hh-hHHHHHHHHhchhhHH--HH----HHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC--CCcchHHHHH
Q 045672 175 MF-TYSAVLRACDSLIILR--QL----HCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPT--RDLVVWNSII 245 (643)
Q Consensus 175 ~~-t~~~ll~a~~~~~~~~--~~----~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li 245 (643)
.. .+..+...+...+... .+ +..+...+..+...+++.++.+|.+.|++++|.++|+++.+ ++..+|+.++
T Consensus 233 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~ 312 (597)
T 2xpi_A 233 CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKA 312 (597)
T ss_dssp CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHH
T ss_pred hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHH
Confidence 33 3333333332222222 11 33334444555666788889999999999999999999988 7899999999
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCCHHH
Q 045672 246 GGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK-YDHDLILNNALLDMYCKCGSLED 324 (643)
Q Consensus 246 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~~~~ 324 (643)
.+|.+.|++++|+++|+++.+.+ +.+..++..++.++...|+.++|..++..+.+ .+.+..+++.++.+|.++|++++
T Consensus 313 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 391 (597)
T 2xpi_A 313 DTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISE 391 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHH
Confidence 99999999999999999999875 34778899999999999999999999999998 77788999999999999999999
Q ss_pred HHHHHhhcC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 045672 325 AMSVFSRMI---QKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKF 401 (643)
Q Consensus 325 A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 401 (643)
|.++|+++. ..+..+|+.++.+|.+.|++++|+++|++|.+.+ +.+..++..++.+|.+.|++++|.++|+.+.+.
T Consensus 392 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (597)
T 2xpi_A 392 ARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL 470 (597)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999884 3468899999999999999999999999999864 457889999999999999999999999999874
Q ss_pred cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 045672 402 YGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-------PYEPD--AVTWRALLGACKVHRNTDLAICAAKKILNLDPQ 472 (643)
Q Consensus 402 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 472 (643)
.+.+..+|+.++.+|.+.|++++|.++|+++ +..|+ ..+|..++.+|.+.|++++|+..++++++.+|+
T Consensus 471 --~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 548 (597)
T 2xpi_A 471 --FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTN 548 (597)
T ss_dssp --CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSC
T ss_pred --CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 3457889999999999999999999999988 45787 789999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHccCChhHHHHHHHHHHhCC
Q 045672 473 DPGTYILLSNIYANSQKWDEVAEVRKTMRARG 504 (643)
Q Consensus 473 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 504 (643)
++.+|..++.+|.+.|++++|.+.++++.+..
T Consensus 549 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 549 DANVHTAIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999998743
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.9e-35 Score=323.96 Aligned_cols=445 Identities=11% Similarity=0.025 Sum_probs=376.3
Q ss_pred CCCcchHHHHHHHHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHc------------
Q 045672 36 TRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSG------------ 103 (643)
Q Consensus 36 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------------ 103 (643)
.||..+|+.++..|.+.|++++|+.+|+++... +++..+++.++.++.+.|++++|..+|+.+...
T Consensus 114 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 191 (597)
T 2xpi_A 114 TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLM 191 (597)
T ss_dssp HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------C
T ss_pred CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccc
Confidence 357789999999999999999999999998643 678999999999999999999999999853221
Q ss_pred ---CCCCchhHHHHHHHHHHcCCChhHHHHHHccCCCC---CcchHHHHHHHHHhCCChhHHHH--H-HHHHHHCCCCCC
Q 045672 104 ---GFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPER---NVVSWTTMISAYCDAKMNDKALE--L-LIFMLREGVRPN 174 (643)
Q Consensus 104 ---g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~--~-~~~m~~~g~~p~ 174 (643)
+.+++..+++.++.+|.+.|++++|.++|++|.+. +...|..+...+...+..+.+.. + +..+...+..+.
T Consensus 192 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 271 (597)
T 2xpi_A 192 QDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFL 271 (597)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHH
T ss_pred cccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHH
Confidence 12335789999999999999999999999999763 34455556555544433332221 1 555555555556
Q ss_pred hhhHHHHHHHHhchhhHH---HHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CCcchHHHHHHHH
Q 045672 175 MFTYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPT---RDLVVWNSIIGGF 248 (643)
Q Consensus 175 ~~t~~~ll~a~~~~~~~~---~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~ 248 (643)
..+|+.++..+.+.|+.+ .++..+.+. +++..+++.++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|
T Consensus 272 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 349 (597)
T 2xpi_A 272 RSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASL 349 (597)
T ss_dssp HHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHH
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHH
Confidence 667777778888888887 444444333 58899999999999999999999999999853 4778999999999
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCCHHHHHH
Q 045672 249 AQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK-YDHDLILNNALLDMYCKCGSLEDAMS 327 (643)
Q Consensus 249 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~~~~A~~ 327 (643)
.+.|++++|.++|+++.+.. +.+..++..+..++.+.|++++|.+++..+.+ .+.+..+++.++.+|.+.|++++|.+
T Consensus 350 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 428 (597)
T 2xpi_A 350 HESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAIS 428 (597)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999998653 55788999999999999999999999999999 66678899999999999999999999
Q ss_pred HHhhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhc--
Q 045672 328 VFSRMIQ---KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFY-- 402 (643)
Q Consensus 328 ~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-- 402 (643)
+|+++.+ .+..+|+.++.+|.+.|++++|+++|++|.+.. +.+..+|..+...|.+.|++++|.++|+++.+..
T Consensus 429 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 507 (597)
T 2xpi_A 429 AYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKK 507 (597)
T ss_dssp HHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhc
Confidence 9998843 477899999999999999999999999998864 4468899999999999999999999999998732
Q ss_pred -CCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchH
Q 045672 403 -GIDPG--REHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTY 477 (643)
Q Consensus 403 -~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 477 (643)
+..|+ ..+|..++.+|.+.|++++|.+.++++ ...| +..+|..+..+|...|++++|...++++++++|+++.++
T Consensus 508 ~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 587 (597)
T 2xpi_A 508 TQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMAS 587 (597)
T ss_dssp SCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHH
Confidence 55777 789999999999999999999999987 3334 788999999999999999999999999999999999999
Q ss_pred HHHHHHHHc
Q 045672 478 ILLSNIYAN 486 (643)
Q Consensus 478 ~~l~~~~~~ 486 (643)
..++++|..
T Consensus 588 ~~l~~~~~~ 596 (597)
T 2xpi_A 588 DLLKRALEE 596 (597)
T ss_dssp HHHHHTTC-
T ss_pred HHHHHHHhc
Confidence 999988753
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=1.5e-25 Score=231.35 Aligned_cols=371 Identities=13% Similarity=0.129 Sum_probs=255.0
Q ss_pred HHHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCChh
Q 045672 47 TRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLE 126 (643)
Q Consensus 47 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 126 (643)
..+.+.|++++|++.++.+.+.. +.+...+..+...+...|++++|...++..++.. +.+..++..+...|.+.|+++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH
Confidence 44556677777777776666542 3344455555556666677777777766666653 345556666666666666666
Q ss_pred HHHHHHccCCC--C-CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHHHHHHHHHHhCC
Q 045672 127 EAQVLFDQMPE--R-NVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGF 203 (643)
Q Consensus 127 ~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~g~ 203 (643)
+|...|+++.+ | +..+|..+...+.+.|++++|++.|+++.+. .|+
T Consensus 85 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~----------------------------- 133 (388)
T 1w3b_A 85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPD----------------------------- 133 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTT-----------------------------
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC-----------------------------
Confidence 66666665543 2 3345666666666666666666666665532 122
Q ss_pred CCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 045672 204 ESDVFVRSALIDIYAKLGELRNAECVFNEMPT---RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVL 280 (643)
Q Consensus 204 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 280 (643)
+..++..+...|...|++++|.+.|+++.+ .+..+|+.+...+.+.|++++|+..|+++.+.
T Consensus 134 --~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------------- 198 (388)
T 1w3b_A 134 --LYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL------------- 198 (388)
T ss_dssp --CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-------------
T ss_pred --cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------------
Confidence 122333444455555555555555544432 12344555555555555555555555554442
Q ss_pred HHHhcCChhHhHHHHHHHHhhcCCchhHHhHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHhcCCHHHHH
Q 045672 281 RACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMI---QKDVISWSTMISGLAQNGYSQEAL 357 (643)
Q Consensus 281 ~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~ 357 (643)
.+.+...+..+...+...|++++|...|++.. ..+..+|..+...|.+.|++++|+
T Consensus 199 ---------------------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 257 (388)
T 1w3b_A 199 ---------------------DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAI 257 (388)
T ss_dssp ---------------------CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ---------------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHH
Confidence 23334455667777778888888888877663 235678888889999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CC
Q 045672 358 KLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PY 436 (643)
Q Consensus 358 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~ 436 (643)
+.|+++.+.. +.+..++..+..++.+.|++++|...|+.+.+. .+.+...+..+...+.+.|++++|.+.++++ ..
T Consensus 258 ~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 334 (388)
T 1w3b_A 258 DTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEV 334 (388)
T ss_dssp HHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS
T ss_pred HHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 9999988753 224677888888999999999999999999873 4567888999999999999999999999887 44
Q ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCC
Q 045672 437 EP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQK 489 (643)
Q Consensus 437 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 489 (643)
.| +..+|..+...+...|++++|+..+++++++.|+++.+|..++.++...|+
T Consensus 335 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 335 FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 45 567899999999999999999999999999999999999999999887664
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=8.6e-27 Score=245.48 Aligned_cols=182 Identities=14% Similarity=0.197 Sum_probs=168.2
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCC---------hhHhHHHHHHHHhh--cCCchh
Q 045672 239 VVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLA---------LLELGTQVHVHVLK--YDHDLI 307 (643)
Q Consensus 239 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~---------~~~~a~~i~~~~~~--~~~~~~ 307 (643)
..++.+|.+|++.|++++|+++|++|.+.|++||..||+++|.+|+..+ .++.|.++|+.|.+ +.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 4678889999999999999999999999999999999999999997654 47889999999988 889999
Q ss_pred HHhHHHHHHHhcCCHHHHHHHHhhcC----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 045672 308 LNNALLDMYCKCGSLEDAMSVFSRMI----QKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACS 383 (643)
Q Consensus 308 ~~~~Li~~y~~~g~~~~A~~~~~~m~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 383 (643)
+||+||++|++.|++++|.++|++|. .||..+||++|.+|++.|+.++|.++|++|.+.|+.||..||+.|+.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 99999999999999999999999994 57999999999999999999999999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhc
Q 045672 384 HAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRA 421 (643)
Q Consensus 384 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 421 (643)
+.|++++|.++|++|.+. +..|+..+|+.+++.|...
T Consensus 187 ~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 999999999999999985 9999999999999988763
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=2.6e-24 Score=222.08 Aligned_cols=325 Identities=14% Similarity=0.051 Sum_probs=227.2
Q ss_pred CcchHHHHHHHHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 045672 38 NSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117 (643)
Q Consensus 38 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 117 (643)
+...+..+...+.+.|++++|...++...+.. +.+..+|..+..++.+.|++++|...++.+++.. +.+...+..+..
T Consensus 32 ~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 109 (388)
T 1w3b_A 32 NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAA 109 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHH
Confidence 45567777788899999999999999988754 5688899999999999999999999999999875 345668999999
Q ss_pred HHHcCCChhHHHHHHccCCC--C-CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHHHH
Q 045672 118 MHVKFSLLEEAQVLFDQMPE--R-NVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQL 194 (643)
Q Consensus 118 ~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 194 (643)
+|.+.|++++|.+.|+++.+ | +...+..+...+...|++++|++.|+++.+. .|+
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~-------------------- 167 (388)
T 1w3b_A 110 ALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET--QPN-------------------- 167 (388)
T ss_dssp HHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH--CTT--------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCC--------------------
Confidence 99999999999999998765 4 4456888889999999999999999999864 222
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC
Q 045672 195 HCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPT---RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAA 271 (643)
Q Consensus 195 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 271 (643)
+..++..+...|.+.|++++|...|+++.+ .+...|..+...+...|++++|+..|++..... +.
T Consensus 168 -----------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~ 235 (388)
T 1w3b_A 168 -----------FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PN 235 (388)
T ss_dssp -----------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TT
T ss_pred -----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cC
Confidence 456788999999999999999999998754 356688899999999999999999999888753 22
Q ss_pred CHHHHHHHHHHHhcCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHH
Q 045672 272 DQSTLTSVLRACTGLALLELGTQVHVHVLK-YDHDLILNNALLDMYCKCGSLEDAMSVFSRMI---QKDVISWSTMISGL 347 (643)
Q Consensus 272 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~ 347 (643)
+..++..+..++...|++++|...+..+.+ .+.+..++..+...|.+.|++++|...|+++. ..+..+|+.+...+
T Consensus 236 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIK 315 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHH
Confidence 455565555555555555555555555555 22333444444444444455554444444442 12333444444444
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 045672 348 AQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMK 399 (643)
Q Consensus 348 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 399 (643)
.+.|++++|++.|+++.+.. +.+..++..+...+.+.|++++|...|+++.
T Consensus 316 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 366 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAI 366 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44444444444444444321 1123344444444444444444444444443
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.94 E-value=6.9e-27 Score=246.23 Aligned_cols=209 Identities=11% Similarity=0.099 Sum_probs=152.5
Q ss_pred hHHHHHHHHHhCCCCCCH-hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCChhHHHHHHccC
Q 045672 57 RAMKAMHAMQCHGVRADS-VTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQM 135 (643)
Q Consensus 57 ~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m 135 (643)
.+..+.+++.+.+..+.+ ..++.+|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+...++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------- 80 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------- 80 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS-------
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh-------
Confidence 445566777777766554 458889999999999999999999999999999999999999999887754321
Q ss_pred CCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHH---HHHHHHHHhCCCCchhHHHH
Q 045672 136 PERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSA 212 (643)
Q Consensus 136 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~---~~~~~~~~~g~~~~~~~~~~ 212 (643)
.+.+..++|.++|++|.+.|+.||..||+++|++|++.|+.+ +++..|.+.|+.||..+||+
T Consensus 81 ---------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~ 145 (501)
T 4g26_A 81 ---------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGP 145 (501)
T ss_dssp ---------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred ---------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehH
Confidence 122334566666666666666666666666666666655555 55555666666666777777
Q ss_pred HHHHHHHcCCHHHHHHHHhhCCC----CCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCC
Q 045672 213 LIDIYAKLGELRNAECVFNEMPT----RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLA 287 (643)
Q Consensus 213 li~~y~~~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~ 287 (643)
||.+|++.|++++|.++|++|.+ ||..+|++||.+|++.|+.++|.++|++|.+.|..|+..||+.++..++..+
T Consensus 146 lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~ 224 (501)
T 4g26_A 146 ALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEV 224 (501)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCc
Confidence 88888999999999999998864 7889999999999999999999999999999999999999999888886543
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=7.6e-23 Score=219.19 Aligned_cols=433 Identities=11% Similarity=-0.027 Sum_probs=221.4
Q ss_pred cchHHHHHHHHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 045672 39 SSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNM 118 (643)
Q Consensus 39 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 118 (643)
...|...-..+.+.|++++|+..|+++.+.. |+..++..+..++...|++++|...++.+++.++ .+...+..+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHHHHHHH
Confidence 3456677788889999999999999998764 6888999999999999999999999999988753 466788888899
Q ss_pred HHcCCChhHHHHHHccCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHh---chhhHH
Q 045672 119 HVKFSLLEEAQVLFDQMPE---RNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACD---SLIILR 192 (643)
Q Consensus 119 ~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~---~~~~~~ 192 (643)
|.+.|++++|...|+++.. .+......++..+........+.+.+..+...+..|+...+..-..... ......
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence 9999999999988887654 2334444445444443333333333333332222222221111000000 000000
Q ss_pred HHHHHHHHhCC---------CCchhHHHHHHHHHHH---cCCHHHHHHHHhhCCC----------------C-CcchHHH
Q 045672 193 QLHCGIIKVGF---------ESDVFVRSALIDIYAK---LGELRNAECVFNEMPT----------------R-DLVVWNS 243 (643)
Q Consensus 193 ~~~~~~~~~g~---------~~~~~~~~~li~~y~~---~g~~~~A~~~f~~~~~----------------~-~~~~~~~ 243 (643)
.+...+..... +.+...+..+...+.. .|++++|...|+++.+ + +..+|..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence 00000000000 0112222223332332 5555555555554332 1 1234555
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCCH
Q 045672 244 IIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK-YDHDLILNNALLDMYCKCGSL 322 (643)
Q Consensus 244 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~~ 322 (643)
+...+...|++++|+..|+++.+.. |+...+..+..++...|+++.|...+..+.+ .+.+..++..+...|...|++
T Consensus 243 ~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCH
Confidence 5555555566666666555555543 2244455555555555555555555555555 333444555555555555555
Q ss_pred HHHHHHHhhcC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 045672 323 EDAMSVFSRMI---QKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMK 399 (643)
Q Consensus 323 ~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 399 (643)
++|...|++.. ..+...|..+...|...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++.+.
T Consensus 321 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 399 (514)
T 2gw1_A 321 DQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAI 399 (514)
T ss_dssp THHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 55555555442 1233445555555555555555555555554431 1223444445555555555555555555544
Q ss_pred HhcCCCCC----hHHHHHHHHHHHh---cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 045672 400 KFYGIDPG----REHYSCMIDLLGR---AGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLD 470 (643)
Q Consensus 400 ~~~~~~p~----~~~~~~li~~~~~---~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 470 (643)
+...-.++ ...+..+...|.+ .|++++|.+.++++ ...| +..+|..+...+...|++++|...+++++++.
T Consensus 400 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 400 ELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp HHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 32111111 2244555555555 55555555555444 1112 33444445555555555555555555555555
Q ss_pred CCCcchH
Q 045672 471 PQDPGTY 477 (643)
Q Consensus 471 p~~~~~~ 477 (643)
|+++..+
T Consensus 480 ~~~~~~~ 486 (514)
T 2gw1_A 480 RTMEEKL 486 (514)
T ss_dssp SSHHHHH
T ss_pred cccHHHH
Confidence 5544333
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=2.7e-22 Score=214.83 Aligned_cols=425 Identities=11% Similarity=-0.047 Sum_probs=320.8
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCChhHHHHHHccCCC---CCcchHHHHHHHH
Q 045672 74 SVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPE---RNVVSWTTMISAY 150 (643)
Q Consensus 74 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~ 150 (643)
...+......+.+.|++++|...|+.+++.+ |+..++..+..+|.+.|++++|...|+++.+ .+..+|..+..+|
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 3456777888899999999999999999976 6889999999999999999999999998764 3567899999999
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHH---HHHHHHHHhCCCCchhHHHHH---HHHHHHcCCHH
Q 045672 151 CDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSAL---IDIYAKLGELR 224 (643)
Q Consensus 151 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~---~~~~~~~~~g~~~~~~~~~~l---i~~y~~~g~~~ 224 (643)
.+.|++++|+..|+++...+ +++......++..+....... .....+...+..|+......- ...........
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence 99999999999999999876 344444444444433322222 111111111111111100000 00011111111
Q ss_pred HHHHHHhhCCC---------C-CcchHHHHHHHHHh---CCChhHHHHHHHHHHH-----cCCC--------CCHHHHHH
Q 045672 225 NAECVFNEMPT---------R-DLVVWNSIIGGFAQ---NSDVDEALNLYKRMKR-----AGFA--------ADQSTLTS 278 (643)
Q Consensus 225 ~A~~~f~~~~~---------~-~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~~--------p~~~t~~~ 278 (643)
.+...+..... + +...+......+.. .|++++|+.+|+++.+ .... .+..++..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence 12222222211 1 23445555555554 8999999999999987 3112 23456777
Q ss_pred HHHHHhcCChhHhHHHHHHHHhhcCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHH
Q 045672 279 VLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ---KDVISWSTMISGLAQNGYSQE 355 (643)
Q Consensus 279 ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~ 355 (643)
+...+...|+++.|...+..+.+..|+..++..+...|...|++++|...|+++.. .+...|..+...|...|++++
T Consensus 243 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 322 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQ 322 (514)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHH
Confidence 88889999999999999999999444488889999999999999999999998754 356789999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-
Q 045672 356 ALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM- 434 (643)
Q Consensus 356 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m- 434 (643)
|+..|+++.... +.+..++..+...+...|++++|...++.+.+. .+.+...+..+...|.+.|++++|.+.++++
T Consensus 323 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 399 (514)
T 2gw1_A 323 AGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAI 399 (514)
T ss_dssp HHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999998853 335678888999999999999999999999874 3446778999999999999999999999887
Q ss_pred ---CCCCC----HHHHHHHHHHHHH---cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCC
Q 045672 435 ---PYEPD----AVTWRALLGACKV---HRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARG 504 (643)
Q Consensus 435 ---~~~p~----~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 504 (643)
+..++ ...|..+...+.. .|++++|...++++++..|+++.++..++.+|.+.|++++|.+.+++..+..
T Consensus 400 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 400 ELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp HHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 22233 4488889999999 9999999999999999999999999999999999999999999999998743
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.91 E-value=1.1e-21 Score=211.57 Aligned_cols=423 Identities=12% Similarity=0.037 Sum_probs=294.7
Q ss_pred CcchHHHHHHHHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 045672 38 NSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117 (643)
Q Consensus 38 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 117 (643)
....|..+-..+.+.|++++|+..|+++.+.. +.+..++..+..++...|++++|.+.++.+++.++ .+...+..+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHH
Confidence 34568888899999999999999999998765 55788999999999999999999999999999863 56788899999
Q ss_pred HHHcCCChhHHHHHHccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHC------CCCCChhhHHHHHHHHhchhhH
Q 045672 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLRE------GVRPNMFTYSAVLRACDSLIIL 191 (643)
Q Consensus 118 ~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~t~~~ll~a~~~~~~~ 191 (643)
+|...|++++|...|+.+ ..+....+..+..+...+...+|+..++++... ...|+..
T Consensus 102 ~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~--------------- 165 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNT--------------- 165 (537)
T ss_dssp HHHHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHH---------------
T ss_pred HHHHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHh---------------
Confidence 999999999999999744 333333344455666666778899999988643 1222222
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCCcc---hHHHHHHHHHhC--------CChhHHHHH
Q 045672 192 RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLV---VWNSIIGGFAQN--------SDVDEALNL 260 (643)
Q Consensus 192 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~---~~~~li~~~~~~--------g~~~~A~~~ 260 (643)
.+..|....+.+.+...+......+.. .+..+...+... |++++|+.+
T Consensus 166 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~ 224 (537)
T 3fp2_A 166 ---------------------SLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDM 224 (537)
T ss_dssp ---------------------HHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHH
T ss_pred ---------------------HHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 223344455555555555555544332 233333332222 356777777
Q ss_pred HHHHHHcCCCCC--------HHHHHHHHHHHhcCChhHhHHHHHHHHhhcCCchhHHhHHHHHHHhcCCHHHHHHHHhhc
Q 045672 261 YKRMKRAGFAAD--------QSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRM 332 (643)
Q Consensus 261 ~~~m~~~g~~p~--------~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m 332 (643)
|+++.+. .|+ ..++..+...+...|+++.|...+..+.+..|+...+..+...|...|++++|...|+++
T Consensus 225 ~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 302 (537)
T 3fp2_A 225 YHSLLSA--NTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKA 302 (537)
T ss_dssp HHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHH
T ss_pred HHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 7776654 232 123444455566667777777777777774455666777777777788888888877776
Q ss_pred CC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChH
Q 045672 333 IQ---KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGRE 409 (643)
Q Consensus 333 ~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 409 (643)
.+ .+..+|..+...+...|++++|++.|+++.... +.+...+..+...+...|++++|...++.+.+. .+.+..
T Consensus 303 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~ 379 (537)
T 3fp2_A 303 VDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPE 379 (537)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTH
T ss_pred hccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChH
Confidence 32 356677778888888888888888888877643 223566777777888888888888888888763 234566
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC----CCC----CCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhcCC
Q 045672 410 HYSCMIDLLGRAGKLQEAVKLIHEM----PYE----PDAVTWRALLGACKVH----------RNTDLAICAAKKILNLDP 471 (643)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m----~~~----p~~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p 471 (643)
.+..+...|.+.|++++|.+.++++ +.. .....+..+...+... |++++|+..++++++..|
T Consensus 380 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p 459 (537)
T 3fp2_A 380 VPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDP 459 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCC
Confidence 7778888888888888888888775 111 1222344444556666 888999999999998888
Q ss_pred CCcchHHHHHHHHHccCChhHHHHHHHHHHhCC
Q 045672 472 QDPGTYILLSNIYANSQKWDEVAEVRKTMRARG 504 (643)
Q Consensus 472 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 504 (643)
+++.++..++.+|.+.|++++|.+.+++..+..
T Consensus 460 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 460 RSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 888888899999999999999999988887643
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.90 E-value=5.5e-21 Score=201.13 Aligned_cols=305 Identities=13% Similarity=0.081 Sum_probs=239.7
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 045672 139 NVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYA 218 (643)
Q Consensus 139 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~ 218 (643)
+...|..+...+.+.|++++|+.+|+++.+. .|+ +..++..+...|.
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~-------------------------------~~~~~~~l~~~~~ 71 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDG--DPD-------------------------------NYIAYYRRATVFL 71 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT-------------------------------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCc-------------------------------cHHHHHHHHHHHH
Confidence 4556777777777788888888888777653 221 3344455667777
Q ss_pred HcCCHHHHHHHHhhCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH----HHHHHH------------
Q 045672 219 KLGELRNAECVFNEMPT---RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQ----STLTSV------------ 279 (643)
Q Consensus 219 ~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~l------------ 279 (643)
..|++++|...|+++.+ .+..+|..+...|.+.|++++|.+.|+++.+. .|+. ..+..+
T Consensus 72 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~ 149 (450)
T 2y4t_A 72 AMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQ 149 (450)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHH
Confidence 77778888777776643 34567777788888888888888888877764 3432 333333
Q ss_pred HHHHhcCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHH
Q 045672 280 LRACTGLALLELGTQVHVHVLK-YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ---KDVISWSTMISGLAQNGYSQE 355 (643)
Q Consensus 280 l~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~ 355 (643)
...+...|+++.|...+..+.+ .+.+..++..+..+|.+.|++++|...|+++.+ .+..+|..+...|...|++++
T Consensus 150 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 229 (450)
T 2y4t_A 150 ALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHEL 229 (450)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 3346778888888888888888 666778889999999999999999999998843 467899999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHH-HHHHH------------HHHHhccCCHHHHHHHHHHhHHhcCCCCC-----hHHHHHHHHH
Q 045672 356 ALKLFESMKVSRIKPNYI-TIVGV------------LFACSHAGFVEDGWNHFKSMKKFYGIDPG-----REHYSCMIDL 417 (643)
Q Consensus 356 A~~l~~~m~~~g~~p~~~-t~~~l------------l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~ 417 (643)
|+..|+++... .|+.. .+..+ ...|.+.|++++|...|+.+.+. .|+ ..++..+..+
T Consensus 230 A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~ 304 (450)
T 2y4t_A 230 SLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHC 304 (450)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHH
Confidence 99999999874 45533 33333 78889999999999999999874 344 4578999999
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 045672 418 LGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNI 483 (643)
Q Consensus 418 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 483 (643)
+.+.|++++|.+.++++ ...| +..+|..+..+|...|++++|...++++++++|+++.++..++.+
T Consensus 305 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 372 (450)
T 2y4t_A 305 FSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKA 372 (450)
T ss_dssp HHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 99999999999999987 3344 678999999999999999999999999999999999999999844
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.89 E-value=8.4e-21 Score=199.72 Aligned_cols=363 Identities=12% Similarity=0.024 Sum_probs=225.8
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCChhHHHHHHccCCC---CCcchHHHHHHH
Q 045672 73 DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPE---RNVVSWTTMISA 149 (643)
Q Consensus 73 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~ 149 (643)
+...+..+...+.+.|++++|..+|+.+++.. +.+..++..+..+|...|++++|...|+++.+ .+..+|..+...
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 44555555556666666666666666655543 23445555555555555555555555555433 234455555555
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHHHHHHHHHHhCCCCch---hHHHHHHHHHHHcCCHHHH
Q 045672 150 YCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDV---FVRSALIDIYAKLGELRNA 226 (643)
Q Consensus 150 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~g~~~~~---~~~~~li~~y~~~g~~~~A 226 (643)
|.+.|++++|++.|+++.+. .|+ +. ..+..+...+...
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~--~~~-------------------------------~~~~~~~~~~l~~~~~~~------ 144 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKS--NPS-------------------------------ENEEKEAQSQLIKSDEMQ------ 144 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTS--CCC-------------------------------HHHHHHHHHHHHHHHHHH------
T ss_pred HHHcCCHHHHHHHHHHHHhc--CCC-------------------------------ChhhHHHHHHHHHHHHHH------
Confidence 55555555555555555432 111 11 3333332221110
Q ss_pred HHHHhhCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhh-cCCc
Q 045672 227 ECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK-YDHD 305 (643)
Q Consensus 227 ~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~ 305 (643)
.+..+...+.+.|++++|+..|+++.+.. +.+...+..+..++...|+++.|...+..+.+ .+.+
T Consensus 145 -------------~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 210 (450)
T 2y4t_A 145 -------------RLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDN 210 (450)
T ss_dssp -------------HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSC
T ss_pred -------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 11122334666777777777777776643 33566677777777777777777777777777 5566
Q ss_pred hhHHhHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhhHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 045672 306 LILNNALLDMYCKCGSLEDAMSVFSRMIQ--K-DVISWSTM------------ISGLAQNGYSQEALKLFESMKVSRIKP 370 (643)
Q Consensus 306 ~~~~~~Li~~y~~~g~~~~A~~~~~~m~~--~-~~~~~~~l------------i~~~~~~g~~~~A~~l~~~m~~~g~~p 370 (643)
..++..+...|.+.|++++|...|+++.. | +...+..+ ...+.+.|++++|+..|+++... .|
T Consensus 211 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p 288 (450)
T 2y4t_A 211 TEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EP 288 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CC
Confidence 67777778888888888888888777632 2 33344444 77788888888888888888774 45
Q ss_pred C-----HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHH
Q 045672 371 N-----YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEPD-AVTW 443 (643)
Q Consensus 371 ~-----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~ 443 (643)
+ ...+..+...+.+.|++++|...++.+.+. .+.+...|..+..+|...|++++|.+.++++ ...|+ ...+
T Consensus 289 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 366 (450)
T 2y4t_A 289 SIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIR 366 (450)
T ss_dssp SSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHH
T ss_pred cchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHH
Confidence 5 346677778888888888888888888763 2346778888888888888888888888877 45554 4455
Q ss_pred HHHHHH------------HHHcC-----CHHHHHHHHHH-HHhcCCCCcc----------hHHHHHHHHHccCChhHH
Q 045672 444 RALLGA------------CKVHR-----NTDLAICAAKK-ILNLDPQDPG----------TYILLSNIYANSQKWDEV 493 (643)
Q Consensus 444 ~~ll~~------------~~~~g-----~~~~a~~~~~~-~~~~~p~~~~----------~~~~l~~~~~~~g~~~~a 493 (643)
..+..+ |...| +.+++.+.+++ .++..|++.. .+..+..+|...|+.+.+
T Consensus 367 ~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r 444 (450)
T 2y4t_A 367 EGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444 (450)
T ss_dssp HHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred HHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 544422 33333 56777888886 6777776421 445566666666555443
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.83 E-value=1e-17 Score=169.88 Aligned_cols=294 Identities=13% Similarity=0.083 Sum_probs=246.0
Q ss_pred chhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 045672 206 DVFVRSALIDIYAKLGELRNAECVFNEMPT---RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRA 282 (643)
Q Consensus 206 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 282 (643)
|+..+..+...|...|++++|...|+++.+ .+..+|..+...+...|++++|+..|+++.+.. +.+...+..+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 445667788899999999999999998754 356789999999999999999999999998863 3366788888999
Q ss_pred HhcCChhHhHHHHHHHHhhcCC----chhHHhHH------------HHHHHhcCCHHHHHHHHhhcC---CCChhhHHHH
Q 045672 283 CTGLALLELGTQVHVHVLKYDH----DLILNNAL------------LDMYCKCGSLEDAMSVFSRMI---QKDVISWSTM 343 (643)
Q Consensus 283 ~~~~~~~~~a~~i~~~~~~~~~----~~~~~~~L------------i~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~l 343 (643)
+...|+++.|...+..+.+..| +...+..+ ...+...|++++|...|+++. ..+...|..+
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 160 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELR 160 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 9999999999999999999444 55555555 588999999999999999874 3467789999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHH-----------
Q 045672 344 ISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYS----------- 412 (643)
Q Consensus 344 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~----------- 412 (643)
...+...|++++|+..++++.... +.+..++..+...+...|++++|...|+...+. .+.+...+.
T Consensus 161 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~ 237 (359)
T 3ieg_A 161 AECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKL 237 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHHHH
Confidence 999999999999999999998753 445788889999999999999999999999874 222333332
Q ss_pred -HHHHHHHhcCCHHHHHHHHHhC-CCCCC-H----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 045672 413 -CMIDLLGRAGKLQEAVKLIHEM-PYEPD-A----VTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYA 485 (643)
Q Consensus 413 -~li~~~~~~g~~~~A~~~~~~m-~~~p~-~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 485 (643)
.+...+.+.|++++|.+.++++ ...|+ . ..+..+...+...|++++|+..++++++..|+++.++..++.+|.
T Consensus 238 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (359)
T 3ieg_A 238 IESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYL 317 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3367799999999999999887 22343 2 234456778999999999999999999999999999999999999
Q ss_pred ccCChhHHHHHHHHHHhC
Q 045672 486 NSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 486 ~~g~~~~a~~~~~~m~~~ 503 (643)
..|++++|.+.+++..+.
T Consensus 318 ~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 318 IEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HTTCHHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHHhc
Confidence 999999999999999864
No 13
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.82 E-value=3.8e-18 Score=183.68 Aligned_cols=407 Identities=10% Similarity=-0.002 Sum_probs=299.6
Q ss_pred CcchHHHHHHHHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 045672 38 NSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117 (643)
Q Consensus 38 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 117 (643)
+..+|..+...|.+.|++++|++.|+++.+.+ +.+..++..+..++...|++++|...++ .+... |+. .+..+.
T Consensus 58 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~--~~~--~~~~~~ 131 (537)
T 3fp2_A 58 EPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTDAMFDLS-VLSLN--GDF--DGASIE 131 (537)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC---------------
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcC--CCC--ChHHHH
Confidence 56789999999999999999999999998765 4578889999999999999999999996 44432 222 122344
Q ss_pred HHHcCCChhHHHHHHccCCCC------CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhH
Q 045672 118 MHVKFSLLEEAQVLFDQMPER------NVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL 191 (643)
Q Consensus 118 ~~~~~g~~~~A~~~f~~m~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 191 (643)
.+...+....|...++++... ........+..+....+.+.++..+.+... ..+....+...+......
T Consensus 132 ~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~--- 206 (537)
T 3fp2_A 132 PMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSN--YDTAYALLSDALQRLYSA--- 206 (537)
T ss_dssp CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCS--SCSSHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccc--cccHHHHHHHHHHHHHHh---
Confidence 455556667888888887652 223345556667777777776655544321 112111111111110000
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCC----------cchHHHHHHHHHhCCChhHHHHHH
Q 045672 192 RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRD----------LVVWNSIIGGFAQNSDVDEALNLY 261 (643)
Q Consensus 192 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~----------~~~~~~li~~~~~~g~~~~A~~~~ 261 (643)
+ .-......|++++|..+|+++.+.+ ..+|..+...+...|++++|+..|
T Consensus 207 --------------~------~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~ 266 (537)
T 3fp2_A 207 --------------T------DEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLL 266 (537)
T ss_dssp --------------S------HHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred --------------h------hhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 0 0111222467888999988876532 225667778889999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCC---CCh
Q 045672 262 KRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK-YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ---KDV 337 (643)
Q Consensus 262 ~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~---~~~ 337 (643)
++..+. .|+...+..+...+...|+++.|...+..+.+ .+.+..++..+...|...|++++|...|++..+ .+.
T Consensus 267 ~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 344 (537)
T 3fp2_A 267 QESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENV 344 (537)
T ss_dssp HHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCS
T ss_pred HHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Confidence 999885 46678888899999999999999999999999 666788999999999999999999999998843 356
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC----ChHHHHH
Q 045672 338 ISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDP----GREHYSC 413 (643)
Q Consensus 338 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~ 413 (643)
..|..+...|...|++++|+..|+++.+.. +.+...+..+...+...|++++|...|+.+.+...-.+ ....+..
T Consensus 345 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 423 (537)
T 3fp2_A 345 YPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIG 423 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHH
Confidence 789999999999999999999999998863 34467888889999999999999999999876421111 1223455
Q ss_pred HHHHHHhc----------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHH
Q 045672 414 MIDLLGRA----------GKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYI 478 (643)
Q Consensus 414 li~~~~~~----------g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 478 (643)
+...|.+. |++++|.+.|+++ ...| +...|..+...+...|++++|...+++++++.|+++....
T Consensus 424 ~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 424 KATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 56778888 9999999999987 3234 5678999999999999999999999999999998765543
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.82 E-value=1.9e-17 Score=167.90 Aligned_cols=308 Identities=13% Similarity=0.072 Sum_probs=246.0
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 045672 139 NVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYA 218 (643)
Q Consensus 139 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~ 218 (643)
|+..|..+...+...|++++|+..|+++.+. .|+ +..++..+...|.
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~-------------------------------~~~~~~~~a~~~~ 48 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDG--DPD-------------------------------NYIAYYRRATVFL 48 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT-------------------------------CHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--Ccc-------------------------------cHHHHHHHHHHHH
Confidence 3456777888888999999999999988764 232 2334555777888
Q ss_pred HcCCHHHHHHHHhhCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC----CHHHHHHH------------
Q 045672 219 KLGELRNAECVFNEMPT---RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAA----DQSTLTSV------------ 279 (643)
Q Consensus 219 ~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p----~~~t~~~l------------ 279 (643)
..|++++|...|++..+ .+...|..+...+...|++++|+..|++..+. .| +...+..+
T Consensus 49 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~ 126 (359)
T 3ieg_A 49 AMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQ 126 (359)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHH
Confidence 88899999888887653 35677888888888999999999999888775 34 23333333
Q ss_pred HHHHhcCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHH
Q 045672 280 LRACTGLALLELGTQVHVHVLK-YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ---KDVISWSTMISGLAQNGYSQE 355 (643)
Q Consensus 280 l~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~ 355 (643)
...+...|+++.|...+..+.+ .+.+..++..+...|...|++++|...|+++.+ .+...|..+...+...|++++
T Consensus 127 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 206 (359)
T 3ieg_A 127 ALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHEL 206 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 4677889999999999999998 667788889999999999999999999998743 367789999999999999999
Q ss_pred HHHHHHHHHHCCCCCC-HHHHH------------HHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-h----HHHHHHHHH
Q 045672 356 ALKLFESMKVSRIKPN-YITIV------------GVLFACSHAGFVEDGWNHFKSMKKFYGIDPG-R----EHYSCMIDL 417 (643)
Q Consensus 356 A~~l~~~m~~~g~~p~-~~t~~------------~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~----~~~~~li~~ 417 (643)
|+..|++..+. .|+ ...+. .+...+...|++++|...++.+.+. .|+ . ..+..+...
T Consensus 207 A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~ 281 (359)
T 3ieg_A 207 SLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHC 281 (359)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHH
Confidence 99999999875 344 33222 2356688999999999999999874 233 2 235567889
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHc
Q 045672 418 LGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYAN 486 (643)
Q Consensus 418 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 486 (643)
|.+.|++++|.+.+++. ...| +..+|..+...+...|++++|...++++++++|+++.++..+..++..
T Consensus 282 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 282 FSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 99999999999999887 3334 677899999999999999999999999999999999888888777654
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.80 E-value=3.4e-17 Score=164.10 Aligned_cols=285 Identities=11% Similarity=-0.022 Sum_probs=223.6
Q ss_pred CCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 045672 204 ESDVFVRSALIDIYAKLGELRNAECVFNEMPT---RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVL 280 (643)
Q Consensus 204 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 280 (643)
..+..+...+...+...|++++|.++|+++.+ .+...+..++..+...|++++|..+++++.+.. +.+...+..+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 44556667788888888999999999988754 345667778888888999999999999988753 33566777788
Q ss_pred HHHhcCC-hhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHH
Q 045672 281 RACTGLA-LLELGTQVHVHVLK-YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ---KDVISWSTMISGLAQNGYSQE 355 (643)
Q Consensus 281 ~a~~~~~-~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~ 355 (643)
..+...| +++.|...+..+.+ .+.+...+..+...|...|++++|...|++..+ .+...|..+...|...|++++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHH
Confidence 8888888 88999999988888 555677888888899999999999998888743 345677778888888999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcC-------CCCChHHHHHHHHHHHhcCCHHHHH
Q 045672 356 ALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYG-------IDPGREHYSCMIDLLGRAGKLQEAV 428 (643)
Q Consensus 356 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-------~~p~~~~~~~li~~~~~~g~~~~A~ 428 (643)
|++.|++..+.. +.+...+..+...+...|++++|...++.+.+... .+.....+..+...|.+.|++++|.
T Consensus 178 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 256 (330)
T 3hym_B 178 AERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEAL 256 (330)
T ss_dssp HHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHH
Confidence 999999887753 33467778888888889999999998888876321 1334568888888888999999999
Q ss_pred HHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH-HccCCh
Q 045672 429 KLIHEM-PYE-PDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIY-ANSQKW 490 (643)
Q Consensus 429 ~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~ 490 (643)
+.+++. ... .+...|..+...+...|++++|...++++++++|+++.++..++.++ ...|+.
T Consensus 257 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 257 DYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 888876 222 35667888888888889999999999999988898888888888888 455554
No 16
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.79 E-value=7.6e-16 Score=165.43 Aligned_cols=393 Identities=10% Similarity=0.058 Sum_probs=262.6
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCChhHHHHHHccCCC--CCcchHHHHHHHH
Q 045672 73 DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPE--RNVVSWTTMISAY 150 (643)
Q Consensus 73 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~ 150 (643)
|...|..++.. .+.|++++|+.+++.+++.. +.+...|..++..+.+.|++++|..+|++..+ |++..|...+...
T Consensus 12 ~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~ 89 (530)
T 2ooe_A 12 DLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYV 89 (530)
T ss_dssp CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 56667666663 55677777777777777653 34556677777777777777777777777655 5555666655422
Q ss_pred -HhCCChhHHHH----HHHHHHHC-CCCCChhhHHHHHHHHhchhhHHHHHHHHHHhCCCCchhHHHHHHHHHH------
Q 045672 151 -CDAKMNDKALE----LLIFMLRE-GVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYA------ 218 (643)
Q Consensus 151 -~~~g~~~~A~~----~~~~m~~~-g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~------ 218 (643)
...|+.++|.+ +|++.... |..|+. ..+|...+....
T Consensus 90 ~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~-------------------------------~~~w~~~~~~~~~~~~~~ 138 (530)
T 2ooe_A 90 RETKGKLPSYKEKMAQAYDFALDKIGMEIMS-------------------------------YQIWVDYINFLKGVEAVG 138 (530)
T ss_dssp HHHTTTSTTHHHHHHHHHHHHHHHTTTSTTC-------------------------------HHHHHHHHHHHHHSCCCS
T ss_pred HHHccchhhHHHHHHHHHHHHHHHCCCCccc-------------------------------HHHHHHHHHHHhcCCCcc
Confidence 34566666554 55555432 433322 122222222222
Q ss_pred ---HcCCHHHHHHHHhhCCC-CCc---chHHHHHHHH-------------HhCCChhHHHHHHHHHH------HcC---C
Q 045672 219 ---KLGELRNAECVFNEMPT-RDL---VVWNSIIGGF-------------AQNSDVDEALNLYKRMK------RAG---F 269 (643)
Q Consensus 219 ---~~g~~~~A~~~f~~~~~-~~~---~~~~~li~~~-------------~~~g~~~~A~~~~~~m~------~~g---~ 269 (643)
+.|+++.|..+|++... |+. ..|....... ...+++++|..++.++. +.. +
T Consensus 139 ~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~ 218 (530)
T 2ooe_A 139 SYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSV 218 (530)
T ss_dssp STTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCC
T ss_pred cHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccC
Confidence 25667777777766543 211 1232211110 12345677777766532 111 2
Q ss_pred CCCH--------HHHHHHHHHHhc----CChh----HhHHHHHHHHhh-cCCchhHHhHHHHHHHh-------cCCHH--
Q 045672 270 AADQ--------STLTSVLRACTG----LALL----ELGTQVHVHVLK-YDHDLILNNALLDMYCK-------CGSLE-- 323 (643)
Q Consensus 270 ~p~~--------~t~~~ll~a~~~----~~~~----~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~-------~g~~~-- 323 (643)
+|+. ..|...+..... .++. +.+..+++.+++ .+.+..+|..++..+.+ .|+++
T Consensus 219 ~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a 298 (530)
T 2ooe_A 219 PPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNA 298 (530)
T ss_dssp CCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHH
T ss_pred CCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhh
Confidence 3431 233333332221 1222 366678888888 77778889888888876 79877
Q ss_pred -----HHHHHHhhcCC---C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCCHHHHH
Q 045672 324 -----DAMSVFSRMIQ---K-DVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNY--ITIVGVLFACSHAGFVEDGW 392 (643)
Q Consensus 324 -----~A~~~~~~m~~---~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~ 392 (643)
+|..+|++..+ | +...|..++..+.+.|++++|..+|+++.+. .|+. ..|...+..+.+.|++++|.
T Consensus 299 ~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~ 376 (530)
T 2ooe_A 299 KLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGR 376 (530)
T ss_dssp HHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHH
Confidence 89999998764 3 5778999999999999999999999999984 5653 47888888888899999999
Q ss_pred HHHHHhHHhcCCCC-ChHHHHHHHHH-HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 045672 393 NHFKSMKKFYGIDP-GREHYSCMIDL-LGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILN 468 (643)
Q Consensus 393 ~~~~~~~~~~~~~p-~~~~~~~li~~-~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 468 (643)
.+|+...+. .| +...|...+.. +...|+.++|.++|++. ...| +...|..++..+...|+.+.|..+|++++.
T Consensus 377 ~~~~~Al~~---~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~ 453 (530)
T 2ooe_A 377 MIFKKARED---ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT 453 (530)
T ss_dssp HHHHHHHTC---TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhc---cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHh
Confidence 999999863 33 33334333322 34689999999999876 2234 577899999999999999999999999999
Q ss_pred cCCCCcc----hHHHHHHHHHccCChhHHHHHHHHHHhC
Q 045672 469 LDPQDPG----TYILLSNIYANSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 469 ~~p~~~~----~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 503 (643)
..|.++. .|...+......|+.+.+..+.+++.+.
T Consensus 454 ~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 454 SGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp SCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8776655 7777788888899999999999988753
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.78 E-value=1.2e-16 Score=159.96 Aligned_cols=263 Identities=13% Similarity=0.056 Sum_probs=228.9
Q ss_pred CCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhh-cCCchhHHhHHHH
Q 045672 236 RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK-YDHDLILNNALLD 314 (643)
Q Consensus 236 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~ 314 (643)
.++..+..+...+...|++++|+++|+++.+.. +.+...+..++.++...|+++.|...+..+.+ .+.+...+..+..
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 98 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGC 98 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence 466778888999999999999999999998864 33455666777888899999999999999999 6667889999999
Q ss_pred HHHhcC-CHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH
Q 045672 315 MYCKCG-SLEDAMSVFSRMIQ---KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVED 390 (643)
Q Consensus 315 ~y~~~g-~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 390 (643)
.|...| ++++|...|++..+ .+...|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHH
Confidence 999999 99999999998754 356789999999999999999999999998853 3345677778889999999999
Q ss_pred HHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC----C-------CCCCHHHHHHHHHHHHHcCCHHHH
Q 045672 391 GWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM----P-------YEPDAVTWRALLGACKVHRNTDLA 459 (643)
Q Consensus 391 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~-------~~p~~~~~~~ll~~~~~~g~~~~a 459 (643)
|...++.+.+. .+.+...+..+...|.+.|++++|.+.++++ + ...+..+|..+...+...|++++|
T Consensus 178 A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 178 AERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 99999999873 3456788999999999999999999999876 1 023457899999999999999999
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHh
Q 045672 460 ICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 460 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
+..++++++..|+++.++..++.+|.+.|++++|.+.+++..+
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999987765
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.77 E-value=4.5e-17 Score=166.17 Aligned_cols=280 Identities=11% Similarity=0.004 Sum_probs=225.5
Q ss_pred HHHcCCHHHHHH-HHhhCCC---C----CcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCh
Q 045672 217 YAKLGELRNAEC-VFNEMPT---R----DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLAL 288 (643)
Q Consensus 217 y~~~g~~~~A~~-~f~~~~~---~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 288 (643)
|...|++++|.. .|++... . +...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 445688899998 8876543 1 35678899999999999999999999999864 4467788889999999999
Q ss_pred hHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHH---------------HHHHHHh
Q 045672 289 LELGTQVHVHVLK-YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQK---DVISWST---------------MISGLAQ 349 (643)
Q Consensus 289 ~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~---------------li~~~~~ 349 (643)
++.|...+..+.+ .+.+..++..+...|...|++++|...|+++... +...+.. .+..+..
T Consensus 114 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (368)
T 1fch_A 114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLS 193 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhh
Confidence 9999999999999 6667888999999999999999999999987432 2222221 2333448
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHH
Q 045672 350 NGYSQEALKLFESMKVSRIK-PNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAV 428 (643)
Q Consensus 350 ~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 428 (643)
.|++++|+..|+++...... ++..++..+...+...|++++|...|+.+.+. .+.+...+..+...|.+.|++++|.
T Consensus 194 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 194 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999885321 14788889999999999999999999999874 3446788999999999999999999
Q ss_pred HHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----------cchHHHHHHHHHccCChhHHHH
Q 045672 429 KLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQD-----------PGTYILLSNIYANSQKWDEVAE 495 (643)
Q Consensus 429 ~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~a~~ 495 (643)
+.++++ ...| +..+|..+...+...|++++|...+++++++.|++ ..+|..++.+|...|++++|..
T Consensus 272 ~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 351 (368)
T 1fch_A 272 AAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 351 (368)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHH
Confidence 999987 3334 57789999999999999999999999999998877 7899999999999999999999
Q ss_pred HHHH
Q 045672 496 VRKT 499 (643)
Q Consensus 496 ~~~~ 499 (643)
++++
T Consensus 352 ~~~~ 355 (368)
T 1fch_A 352 ADAR 355 (368)
T ss_dssp HHTT
T ss_pred hHHH
Confidence 8763
No 19
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.76 E-value=3.7e-15 Score=158.41 Aligned_cols=378 Identities=8% Similarity=-0.016 Sum_probs=285.6
Q ss_pred hHHHHHHHHHhCCCCCCHhhHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHc----CCChhHH
Q 045672 57 RAMKAMHAMQCHGVRADSVTYAELIKCCLA----RHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVK----FSLLEEA 128 (643)
Q Consensus 57 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A 128 (643)
.++..++...+.| +...+..+...+.. .+++++|...++...+.| +...+..|..+|.. .++.++|
T Consensus 25 ~~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A 98 (490)
T 2xm6_A 25 VNLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQA 98 (490)
T ss_dssp CCHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 3455555555443 66677777777776 788899999998888764 45677778888887 8888999
Q ss_pred HHHHccCCC-CCcchHHHHHHHHHh----CCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHHHHHHHHHHhCC
Q 045672 129 QVLFDQMPE-RNVVSWTTMISAYCD----AKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGF 203 (643)
Q Consensus 129 ~~~f~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~g~ 203 (643)
...|++..+ .+...+..|...|.. .+++++|+..|++..+.|
T Consensus 99 ~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--------------------------------- 145 (490)
T 2xm6_A 99 VIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG--------------------------------- 145 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------------------------------
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---------------------------------
Confidence 988887655 366677778888877 788899999998887654
Q ss_pred CCchhHHHHHHHHHHH----cCCHHHHHHHHhhCCC-CCcchHHHHHHHHHh----CCChhHHHHHHHHHHHcCCCCCHH
Q 045672 204 ESDVFVRSALIDIYAK----LGELRNAECVFNEMPT-RDLVVWNSIIGGFAQ----NSDVDEALNLYKRMKRAGFAADQS 274 (643)
Q Consensus 204 ~~~~~~~~~li~~y~~----~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~ 274 (643)
+...+..|..+|.. .+++++|.+.|++..+ .+..++..+...|.. .+++++|+++|++..+.| +..
T Consensus 146 --~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~ 220 (490)
T 2xm6_A 146 --RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DEL 220 (490)
T ss_dssp --CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred --CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHH
Confidence 11223335555655 6788888888877644 466777788888877 788899999998888765 455
Q ss_pred HHHHHHHHHhc----CChhHhHHHHHHHHhhcCCchhHHhHHHHHHHh----cCCHHHHHHHHhhcCC-CChhhHHHHHH
Q 045672 275 TLTSVLRACTG----LALLELGTQVHVHVLKYDHDLILNNALLDMYCK----CGSLEDAMSVFSRMIQ-KDVISWSTMIS 345 (643)
Q Consensus 275 t~~~ll~a~~~----~~~~~~a~~i~~~~~~~~~~~~~~~~Li~~y~~----~g~~~~A~~~~~~m~~-~~~~~~~~li~ 345 (643)
.+..+...+.. .++.+.|...+..+.+. .+...+..|..+|.. .++.++|...|++..+ .+...+..+..
T Consensus 221 a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~ 299 (490)
T 2xm6_A 221 GQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ-GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAH 299 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 56666666654 67888888888887763 234456677777877 8999999999998854 36677888888
Q ss_pred HHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC---CHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 045672 346 GLAQN-----GYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAG---FVEDGWNHFKSMKKFYGIDPGREHYSCMIDL 417 (643)
Q Consensus 346 ~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g---~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 417 (643)
.|... ++.++|+..|++..+.| +...+..+...+...| +.++|.+.|+...+. .+...+..|..+
T Consensus 300 ~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~ 372 (490)
T 2xm6_A 300 LYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNA 372 (490)
T ss_dssp HHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHH
T ss_pred HHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHH
Confidence 88887 89999999999998865 4456666666666656 789999999998873 467788889999
Q ss_pred HHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCC---CcchHHHHHHHHHc
Q 045672 418 LGR----AGKLQEAVKLIHEMPYEPDAVTWRALLGACKV----HRNTDLAICAAKKILNLDPQ---DPGTYILLSNIYAN 486 (643)
Q Consensus 418 ~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 486 (643)
|.. .+++++|.+.|++.-...+...+..|...+.. .++.++|...++++.+.+|+ ++.+...|+.++..
T Consensus 373 y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 373 LLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred HHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 988 89999999999887333467788888888887 89999999999999999854 66666666665543
No 20
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.75 E-value=4.8e-15 Score=159.18 Aligned_cols=407 Identities=11% Similarity=0.079 Sum_probs=291.2
Q ss_pred CcchHHHHHHHHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 045672 38 NSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117 (643)
Q Consensus 38 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 117 (643)
|+.+|..++. +.+.|++++|..+|+++.+.. +.+...|...+..+.+.|++++|+.+|+.+++.. |+...|...+.
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~ 87 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLS 87 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHH
Confidence 6678999998 588999999999999999753 5577789999999999999999999999999864 57777777765
Q ss_pred H-HHcCCChhHHHH----HHccCC-----C-CCcchHHHHHHHHHh---------CCChhHHHHHHHHHHHCCCCCChhh
Q 045672 118 M-HVKFSLLEEAQV----LFDQMP-----E-RNVVSWTTMISAYCD---------AKMNDKALELLIFMLREGVRPNMFT 177 (643)
Q Consensus 118 ~-~~~~g~~~~A~~----~f~~m~-----~-~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~p~~~t 177 (643)
. ....|+.++|.+ +|+... . .+...|...+....+ .|++++|..+|++.+.. |+..
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~---P~~~- 163 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN---PMIN- 163 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS---CCTT-
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc---hhhh-
Confidence 3 345677777765 666542 1 345678888776654 68899999999999872 4321
Q ss_pred HHHHHHHHhchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhh-------CC------CCC-------
Q 045672 178 YSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNE-------MP------TRD------- 237 (643)
Q Consensus 178 ~~~ll~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~-------~~------~~~------- 237 (643)
...+...+..... ..| ..+...++. .+.+++..|..++.. +. .|+
T Consensus 164 ~~~~~~~~~~~e~---------~~~----~~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~ 228 (530)
T 2ooe_A 164 IEQLWRDYNKYEE---------GIN----IHLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQ 228 (530)
T ss_dssp HHHHHHHHHHHHH---------HHC----HHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHH
T ss_pred HHHHHHHHHHHHH---------hhc----hhHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHH
Confidence 1111111111000 000 001111111 123445555554443 11 111
Q ss_pred -cchHHHHHHHHHhC----CCh----hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-------CChhH-------hHHH
Q 045672 238 -LVVWNSIIGGFAQN----SDV----DEALNLYKRMKRAGFAADQSTLTSVLRACTG-------LALLE-------LGTQ 294 (643)
Q Consensus 238 -~~~~~~li~~~~~~----g~~----~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~-------~~~~~-------~a~~ 294 (643)
...|...+.....+ ++. ++|..+|++..... +-+...|......+.. .|+++ .|..
T Consensus 229 ~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~ 307 (530)
T 2ooe_A 229 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAAN 307 (530)
T ss_dssp HHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHH
Confidence 24566665444332 233 47788999888752 3456677777777664 78877 8999
Q ss_pred HHHHHhh-c-CCchhHHhHHHHHHHhcCCHHHHHHHHhhcCC--C-Ch-hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 045672 295 VHVHVLK-Y-DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ--K-DV-ISWSTMISGLAQNGYSQEALKLFESMKVSRI 368 (643)
Q Consensus 295 i~~~~~~-~-~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~--~-~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 368 (643)
+++.+++ . +.+..++..++..+.+.|++++|..+|+++.+ | +. ..|...+..+.+.|+.++|.++|++..+.
T Consensus 308 ~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~-- 385 (530)
T 2ooe_A 308 IYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED-- 385 (530)
T ss_dssp HHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--
Confidence 9999997 4 55688999999999999999999999998843 3 33 48999999999999999999999999875
Q ss_pred CCC-HHHHHHHHHH-HhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC--H
Q 045672 369 KPN-YITIVGVLFA-CSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM----PYEPD--A 440 (643)
Q Consensus 369 ~p~-~~t~~~ll~a-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~--~ 440 (643)
.|+ ...+...... +...|+.++|..+|+...+.. +.+...|..+++.+.+.|+.++|..+|++. +..|+ .
T Consensus 386 ~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~ 463 (530)
T 2ooe_A 386 ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSG 463 (530)
T ss_dssp TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCH
T ss_pred cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHH
Confidence 333 3333332222 335899999999999998742 346788999999999999999999999987 23332 5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 045672 441 VTWRALLGACKVHRNTDLAICAAKKILNLDPQ 472 (643)
Q Consensus 441 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 472 (643)
..|...+.....+|+.+.+..+.+++.+..|+
T Consensus 464 ~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 464 EIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 58999999899999999999999999998885
No 21
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.75 E-value=9.7e-17 Score=161.12 Aligned_cols=350 Identities=12% Similarity=0.084 Sum_probs=154.5
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCChhHHHHHHccCCCCCcchHHHHHHHHHhCCChhHHHHHHHH
Q 045672 86 ARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIF 165 (643)
Q Consensus 86 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 165 (643)
+.|++++|.+.++++ +++.+|..|..++.+.|++++|.+.|.+. +|..+|..++.++...|++++|+..++.
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 344555555555555 12235555666666666666666666432 3444555555555556666666554444
Q ss_pred HHHCCCCCChhhHHHHHHHHhchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCCcchHHHHH
Q 045672 166 MLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSII 245 (643)
Q Consensus 166 m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li 245 (643)
.++. .+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+.
T Consensus 87 ark~----------------------------------~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IG 129 (449)
T 1b89_A 87 ARKK----------------------------------ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVG 129 (449)
T ss_dssp --------------------------------------------------------CHHHHTTTTTC---C---------
T ss_pred HHHh----------------------------------CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHH
Confidence 3321 23455666788888888888888877753 5667888888
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhhcCCchhHHhHHHHHHHhcCCHHHH
Q 045672 246 GGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDA 325 (643)
Q Consensus 246 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A 325 (643)
..|...|++++|..+|..+ ..|..+..++.++|+++.|.+.+..+ .++.+|..++.+|...|+++.|
T Consensus 130 d~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA----~~~~~Wk~v~~aCv~~~ef~lA 196 (449)
T 1b89_A 130 DRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA----NSTRTWKEVCFACVDGKEFRLA 196 (449)
T ss_dssp -------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH----TCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc----CCchhHHHHHHHHHHcCcHHHH
Confidence 8888888888888888865 36778888888888888888888777 3677888888888888999998
Q ss_pred HHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--hccCCHHHHHHHHHHhHHhcC
Q 045672 326 MSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFAC--SHAGFVEDGWNHFKSMKKFYG 403 (643)
Q Consensus 326 ~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~--~~~g~~~~a~~~~~~~~~~~~ 403 (643)
......+. .++.-...++..|.+.|++++|+.+++...... +-....|+.+..++ .+.+++.+.++.|.. +.+
T Consensus 197 ~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~---~in 271 (449)
T 1b89_A 197 QMCGLHIV-VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS---RVN 271 (449)
T ss_dssp HHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST---TSC
T ss_pred HHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---Hhc
Confidence 87777654 344444568888999999999999999887543 33344455444444 445566666665542 234
Q ss_pred CCC------ChHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcch
Q 045672 404 IDP------GREHYSCMIDLLGRAGKLQEAVKLIHEMP-YEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGT 476 (643)
Q Consensus 404 ~~p------~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 476 (643)
++| +...|.-++-.|...++++.|...+-+-+ ..-+...+. ....+..+.+.--+...-.++..| ..
T Consensus 272 i~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~---~~~~kv~n~elyYkai~fyl~~~p---~~ 345 (449)
T 1b89_A 272 IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFK---DIITKVANVELYYRAIQFYLEFKP---LL 345 (449)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHH---HHHHHCSSTHHHHHHHHHHHHHCG---GG
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHH---HHHhchhHHHHHHHHHHHHHhcCH---HH
Confidence 454 46678999999999999999887665542 211222222 222334444433333333333333 22
Q ss_pred H-------------HHHHHHHHccCChhHHHHHHHHHHhCC
Q 045672 477 Y-------------ILLSNIYANSQKWDEVAEVRKTMRARG 504 (643)
Q Consensus 477 ~-------------~~l~~~~~~~g~~~~a~~~~~~m~~~g 504 (643)
. ......+.+.|.+.-+..+++.+.+.+
T Consensus 346 l~~ll~~l~~~ld~~r~v~~~~~~~~l~l~~~yl~~v~~~n 386 (449)
T 1b89_A 346 LNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHN 386 (449)
T ss_dssp HHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTTC
T ss_pred HHHHHHHHHhccCcHHHHHHHHHcCCcHHHHHHHHHHHHhh
Confidence 2 233445556666666666665555443
No 22
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.73 E-value=5.1e-18 Score=170.38 Aligned_cols=252 Identities=15% Similarity=0.109 Sum_probs=119.9
Q ss_pred HHcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHH
Q 045672 218 AKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHV 297 (643)
Q Consensus 218 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~ 297 (643)
-+.|++++|.++++++..| .+|+.|+.++.+.|++++|++.|.+ .+|..+|..++.++...|++++|..++.
T Consensus 14 ~~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3678899999999999665 4999999999999999999999965 3678899999999999999999999999
Q ss_pred HHhhcCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 045672 298 HVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVG 377 (643)
Q Consensus 298 ~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 377 (643)
.+.+..+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|++++|...|..+ ..|..
T Consensus 86 ~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~ 153 (449)
T 1b89_A 86 MARKKARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGR 153 (449)
T ss_dssp -----------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHHH
T ss_pred HHHHhCccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHH
Confidence 8888556688899999999999999999988864 67789999999999999999999999977 36889
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 045672 378 VLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTD 457 (643)
Q Consensus 378 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~ 457 (643)
+..++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+...|+. ...++..|.+.|.++
T Consensus 154 LA~~L~~Lg~yq~AVea~~KA-------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~--l~~lv~~Yek~G~~e 224 (449)
T 1b89_A 154 LASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADE--LEELINYYQDRGYFE 224 (449)
T ss_dssp HHHHHHTTTCHHHHHHHHHHH-------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHH--HHHHHHHHHHTTCHH
T ss_pred HHHHHHHhccHHHHHHHHHHc-------CCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhh--HHHHHHHHHHCCCHH
Confidence 999999999999999999877 26889999999999999999997776665544444 446888999999999
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHcc--CChhHHHHHHH
Q 045672 458 LAICAAKKILNLDPQDPGTYILLSNIYANS--QKWDEVAEVRK 498 (643)
Q Consensus 458 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~a~~~~~ 498 (643)
+|..+++..+.+++.....|..|+-+|++- |+..+..+.|.
T Consensus 225 Eai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~ 267 (449)
T 1b89_A 225 ELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW 267 (449)
T ss_dssp HHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHS
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999999999999999999999999764 45556665553
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.73 E-value=3.3e-16 Score=159.70 Aligned_cols=260 Identities=10% Similarity=-0.019 Sum_probs=203.0
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhh-cCCchhHHhHHHHH
Q 045672 237 DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK-YDHDLILNNALLDM 315 (643)
Q Consensus 237 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~ 315 (643)
+...|..+...+.+.|++++|+.+|+++.+.. +.+..++..+..++...|+++.|...+..+.+ .+.+..++..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 44557777777888888888888888777753 33566777777778888888888888888877 55557778888888
Q ss_pred HHhcCCHHHHHHHHhhcCCCC---h----------hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHH
Q 045672 316 YCKCGSLEDAMSVFSRMIQKD---V----------ISWSTMISGLAQNGYSQEALKLFESMKVSRIK-PNYITIVGVLFA 381 (643)
Q Consensus 316 y~~~g~~~~A~~~~~~m~~~~---~----------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~a 381 (643)
|.+.|++++|...|+++.+.+ . ..+..+...+...|++++|++.|+++.+.... ++..++..+...
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 888889988888888874321 1 22344578889999999999999999885421 157888899999
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHH
Q 045672 382 CSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLA 459 (643)
Q Consensus 382 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a 459 (643)
+...|++++|...|+.+.+. .+.+...+..+...|.+.|++++|.+.|+++ ...| +..+|..+...+...|++++|
T Consensus 223 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999999874 3456789999999999999999999999887 3344 477899999999999999999
Q ss_pred HHHHHHHHhcCCC------------CcchHHHHHHHHHccCChhHHHHHHHH
Q 045672 460 ICAAKKILNLDPQ------------DPGTYILLSNIYANSQKWDEVAEVRKT 499 (643)
Q Consensus 460 ~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 499 (643)
...+++++++.|+ +...+..++.++...|+.+.+.++.++
T Consensus 301 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 301 VSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999998776 367899999999999999998887654
No 24
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.73 E-value=1.1e-15 Score=161.66 Aligned_cols=365 Identities=11% Similarity=0.005 Sum_probs=225.2
Q ss_pred hHHHHHHHHHHcCCChhHHHHHHccCC-----------C-CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCC---CCCC
Q 045672 110 FLVNILLNMHVKFSLLEEAQVLFDQMP-----------E-RNVVSWTTMISAYCDAKMNDKALELLIFMLREG---VRPN 174 (643)
Q Consensus 110 ~~~~~li~~~~~~g~~~~A~~~f~~m~-----------~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~ 174 (643)
..||.|...|...|+.++|++.|++.. . ....+|+.+...|...|++++|+..|++..+.. ..|.
T Consensus 52 ~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~ 131 (472)
T 4g1t_A 52 TMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPY 131 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccccc
Confidence 345555555555555555555554331 1 235678888888889999999988888775421 0000
Q ss_pred hhhHHHHHHHHhchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHH--cCCHHHHHHHHhhCCC--C-CcchHHHHHHH--
Q 045672 175 MFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAK--LGELRNAECVFNEMPT--R-DLVVWNSIIGG-- 247 (643)
Q Consensus 175 ~~t~~~ll~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~--~g~~~~A~~~f~~~~~--~-~~~~~~~li~~-- 247 (643)
......++..+..++.+ .+++++|...|++..+ | ++..+..+...
T Consensus 132 ----------------------------~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~ 183 (472)
T 4g1t_A 132 ----------------------------RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASY 183 (472)
T ss_dssp ----------------------------CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred ----------------------------chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 00112233333334444 3568999999987653 3 44555555444
Q ss_pred -HHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHh----cCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCC
Q 045672 248 -FAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACT----GLALLELGTQVHVHVLK-YDHDLILNNALLDMYCKCGS 321 (643)
Q Consensus 248 -~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~----~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~ 321 (643)
+...++.++|++.|++..+.. +.+...+..+...+. ..++.+.|.+.+..+.+ .+.+..++..+...|.+.|+
T Consensus 184 ~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~ 262 (472)
T 4g1t_A 184 RLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDE 262 (472)
T ss_dssp HHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC
T ss_pred HhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCc
Confidence 345678889999998887753 234455555544443 34677889999998888 66677888999999999999
Q ss_pred HHHHHHHHhhcCC---CChhhHHHHHHHHHhc-------------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 045672 322 LEDAMSVFSRMIQ---KDVISWSTMISGLAQN-------------------GYSQEALKLFESMKVSRIKPNYITIVGVL 379 (643)
Q Consensus 322 ~~~A~~~~~~m~~---~~~~~~~~li~~~~~~-------------------g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 379 (643)
+++|...|++..+ .+..+|..+...|... +..++|+..|++..... +.+..++..+.
T Consensus 263 ~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg 341 (472)
T 4g1t_A 263 PDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILA 341 (472)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHH
T ss_pred hHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHH
Confidence 9999999988743 3455666666555332 33567888888877643 33355677788
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCCCh--HHHHHHHH-HHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCC
Q 045672 380 FACSHAGFVEDGWNHFKSMKKFYGIDPGR--EHYSCMID-LLGRAGKLQEAVKLIHEM-PYEPDAVTWRALLGACKVHRN 455 (643)
Q Consensus 380 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~~~li~-~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~ 455 (643)
..+...|++++|...|++..+. ...|.. ..+..+.. .+...|++++|++.|++. .+.|+...+...
T Consensus 342 ~~~~~~~~~~~A~~~~~kaL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~--------- 411 (472)
T 4g1t_A 342 SLHALADQYEEAEYYFQKEFSK-ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM--------- 411 (472)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH---------
T ss_pred HHHHHhccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH---------
Confidence 8899999999999999998763 222211 12233332 234678999999998876 556665443332
Q ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCcCCceeEE
Q 045672 456 TDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWI 514 (643)
Q Consensus 456 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~ 514 (643)
...+..++++.++.+|+++.+|..|+.+|...|++++|.+.+++..+.|-......+|+
T Consensus 412 ~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 412 KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 34456778888899999999999999999999999999999999988764433334553
No 25
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.72 E-value=3.8e-14 Score=150.59 Aligned_cols=361 Identities=12% Similarity=-0.000 Sum_probs=290.9
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHc----CCChhHHHHHHccCCC-CCcchHHHHHHHHHh----CCChhHHHHHHH
Q 045672 94 KLVHNHVLSGGFEPETFLVNILLNMHVK----FSLLEEAQVLFDQMPE-RNVVSWTTMISAYCD----AKMNDKALELLI 164 (643)
Q Consensus 94 ~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~f~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~ 164 (643)
...+....+. .+......|...|.. .+++++|...|++..+ .+...+..|...|.. .+++++|++.|+
T Consensus 27 ~~~~~~~a~~---g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 103 (490)
T 2xm6_A 27 LEQLKQKAES---GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYK 103 (490)
T ss_dssp HHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 3444444443 356677778888877 8999999999987654 467788888888988 899999999999
Q ss_pred HHHHCCCCCChhhHHHHHHHHhchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHH----cCCHHHHHHHHhhCCCC-Ccc
Q 045672 165 FMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAK----LGELRNAECVFNEMPTR-DLV 239 (643)
Q Consensus 165 ~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~f~~~~~~-~~~ 239 (643)
+..+.| +...+..|..+|.. .+++++|.+.|++..+. +..
T Consensus 104 ~a~~~~-----------------------------------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~ 148 (490)
T 2xm6_A 104 KAALKG-----------------------------------LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDS 148 (490)
T ss_dssp HHHHTT-----------------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHCC-----------------------------------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHH
Confidence 987654 22233346666776 78999999999887654 567
Q ss_pred hHHHHHHHHHh----CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----CChhHhHHHHHHHHhhcCCchhHHhH
Q 045672 240 VWNSIIGGFAQ----NSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTG----LALLELGTQVHVHVLKYDHDLILNNA 311 (643)
Q Consensus 240 ~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~~~~~~a~~i~~~~~~~~~~~~~~~~ 311 (643)
++..+...|.. .+++++|++.|++..+.| +...+..+...+.. .++.+.|...+..+.+. .+...+..
T Consensus 149 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~~~~a~~~ 224 (490)
T 2xm6_A 149 GQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS-GDELGQLH 224 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC-CCHHHHHH
Confidence 88888888887 789999999999998875 56777777777776 88999999999998873 24567778
Q ss_pred HHHHHHh----cCCHHHHHHHHhhcCC-CChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 045672 312 LLDMYCK----CGSLEDAMSVFSRMIQ-KDVISWSTMISGLAQ----NGYSQEALKLFESMKVSRIKPNYITIVGVLFAC 382 (643)
Q Consensus 312 Li~~y~~----~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 382 (643)
|..+|.. .++.++|...|++..+ .+...+..+...|.. .++.++|++.|++..+.| +...+..+...+
T Consensus 225 lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y 301 (490)
T 2xm6_A 225 LADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLY 301 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHH
Confidence 8888886 8999999999998754 466777888888887 899999999999998765 445666677777
Q ss_pred hcc-----CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHH--
Q 045672 383 SHA-----GFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAG---KLQEAVKLIHEMPYEPDAVTWRALLGACKV-- 452 (643)
Q Consensus 383 ~~~-----g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~-- 452 (643)
... ++.++|...|+...+. .+...+..+..+|.+.| ++++|.+.|++.-...+...+..|...+..
T Consensus 302 ~~~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~ 377 (490)
T 2xm6_A 302 DKGAEGVAKNREQAISWYTKSAEQ----GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGK 377 (490)
T ss_dssp HHCBTTBCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS
T ss_pred HcCCCCCcCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC
Confidence 766 8999999999999873 34567788888888867 789999999887333578888888888888
Q ss_pred --cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHc----cCChhHHHHHHHHHHhCCC
Q 045672 453 --HRNTDLAICAAKKILNLDPQDPGTYILLSNIYAN----SQKWDEVAEVRKTMRARGI 505 (643)
Q Consensus 453 --~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~ 505 (643)
.+++++|...++++.+.+ ++.++..|+.+|.. .++.++|.+.+++..+.|.
T Consensus 378 g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 378 GVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 899999999999998865 46799999999998 8999999999999998763
No 26
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.72 E-value=8.7e-16 Score=153.54 Aligned_cols=258 Identities=9% Similarity=-0.034 Sum_probs=193.3
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHH
Q 045672 239 VVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK-YDHDLILNNALLDMYC 317 (643)
Q Consensus 239 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~ 317 (643)
..|..+...+...|++++|+.+|+++.+.. +.+...+..+..++...|+++.|...+..+.+ .+.+..++..+...|.
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 100 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHH
Confidence 345555666666666666666666666542 22455555566666666666666666666666 4445566677777777
Q ss_pred hcCCHHHHHHHHhhcCCC---ChhhHHHH--------------HH-HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 045672 318 KCGSLEDAMSVFSRMIQK---DVISWSTM--------------IS-GLAQNGYSQEALKLFESMKVSRIKPNYITIVGVL 379 (643)
Q Consensus 318 ~~g~~~~A~~~~~~m~~~---~~~~~~~l--------------i~-~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 379 (643)
..|++++|...|+++.+. +...+..+ .. .+...|++++|+..++++.+.. +.+...+..+.
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 179 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLG 179 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 777777777777766322 22233322 22 3677889999999999998753 34677888889
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHH
Q 045672 380 FACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTD 457 (643)
Q Consensus 380 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~ 457 (643)
..+...|++++|...++.+.+. .+.+...+..+...|.+.|++++|.+.++++ ...| +..+|..+...+...|+++
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~ 257 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYD 257 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHH
Confidence 9999999999999999999874 3446778999999999999999999999887 3333 5778999999999999999
Q ss_pred HHHHHHHHHHhcCCC------------CcchHHHHHHHHHccCChhHHHHHHHHH
Q 045672 458 LAICAAKKILNLDPQ------------DPGTYILLSNIYANSQKWDEVAEVRKTM 500 (643)
Q Consensus 458 ~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m 500 (643)
+|...++++++..|+ ++.++..++.+|...|++++|..++++.
T Consensus 258 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 258 LAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 999999999999998 6889999999999999999999988644
No 27
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.71 E-value=1.4e-13 Score=153.70 Aligned_cols=380 Identities=11% Similarity=0.062 Sum_probs=281.9
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCC--CCchhHHHHHHHHHHcCCChhHHHHHHccCCCCCcchHHHHHHHHHhC
Q 045672 76 TYAELIKCCLARHAVEEAKLVHNHVLSGGF--EPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDA 153 (643)
Q Consensus 76 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~ 153 (643)
--...+++|...|.+.+|.++++.++..+- ..+....+.|+.+..+. +..+.....++...-+ ...+...+...
T Consensus 987 eVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~l 1062 (1630)
T 1xi4_A 987 EVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAISN 1062 (1630)
T ss_pred HhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHhC
Confidence 345567778888888888888888874321 13445666677666666 4455555555544322 44467777888
Q ss_pred CChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhC
Q 045672 154 KMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233 (643)
Q Consensus 154 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~ 233 (643)
|.+++|..+|++.. -.....+.++. ..+++++..+.+.+. -+..+|..+..++.+.|++++|...|.+.
T Consensus 1063 glyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv---n~p~vWsqLAKAql~~G~~kEAIdsYiKA 1131 (1630)
T 1xi4_A 1063 ELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC---NEPAVWSQLAKAQLQKGMVKEAIDSYIKA 1131 (1630)
T ss_pred CCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc---CCHHHHHHHHHHHHhCCCHHHHHHHHHhc
Confidence 88888888888852 11222333333 334444444444333 35788889999999999999999999774
Q ss_pred CCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhhcCCchhHHhHHH
Q 045672 234 PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALL 313 (643)
Q Consensus 234 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~Li 313 (643)
.|...|..++..+.+.|++++|+++|...++.. ++....+.++.+|++.++++....+. + .++...+..+.
T Consensus 1132 --dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~-~~n~ad~~~iG 1202 (1630)
T 1xi4_A 1132 --DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N-GPNNAHIQQVG 1202 (1630)
T ss_pred --CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h-CCCHHHHHHHH
Confidence 677888899999999999999999998777654 33333445888899998887544332 2 34445666799
Q ss_pred HHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 045672 314 DMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN 393 (643)
Q Consensus 314 ~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 393 (643)
+.|...|++++|...|... ..|..+...|.+.|++++|++.+++. -+..+|..+-.+|...|++..|..
T Consensus 1203 d~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~ 1271 (1630)
T 1xi4_A 1203 DRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQM 1271 (1630)
T ss_pred HHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHH
Confidence 9999999999999999985 48999999999999999999999976 356889999999999999999987
Q ss_pred HHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHH--cCCHHHHHHHHHHHHhc
Q 045672 394 HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEPD-AVTWRALLGACKV--HRNTDLAICAAKKILNL 469 (643)
Q Consensus 394 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~--~g~~~~a~~~~~~~~~~ 469 (643)
.... +..++..+..++..|.+.|.+++|+.+++.. +..|. ...|.-|..++.+ -++..++.+.|..-..+
T Consensus 1272 cgl~------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini 1345 (1630)
T 1xi4_A 1272 CGLH------IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNI 1345 (1630)
T ss_pred HHHh------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhccc
Confidence 6643 3345677889999999999999999999776 54443 3456555555554 45677788888877776
Q ss_pred CC-----CCcchHHHHHHHHHccCChhHHHHH
Q 045672 470 DP-----QDPGTYILLSNIYANSQKWDEVAEV 496 (643)
Q Consensus 470 ~p-----~~~~~~~~l~~~~~~~g~~~~a~~~ 496 (643)
.| .+...|.-+...|.+.|.|+.|...
T Consensus 1346 ~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1346 PKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred chHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 65 5778899999999999999999853
No 28
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.70 E-value=7.1e-16 Score=157.22 Aligned_cols=275 Identities=13% Similarity=0.075 Sum_probs=202.6
Q ss_pred cCCHHHHHHHHhhCCCCCcchHHHHHHHHHhCCChhHHHH-HHHHHHHcCC-CC--CHHHHHHHHHHHhcCChhHhHHHH
Q 045672 220 LGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALN-LYKRMKRAGF-AA--DQSTLTSVLRACTGLALLELGTQV 295 (643)
Q Consensus 220 ~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~-~~~~m~~~g~-~p--~~~t~~~ll~a~~~~~~~~~a~~i 295 (643)
.+.++.+...|+.+...+.. .+...|++++|++ .|.+...... .| +...+..+...+...|+++.|...
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 86 (368)
T 1fch_A 14 VDFWDKLQAELEEMAKRDAE-------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLL 86 (368)
T ss_dssp ---------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHcCCch-------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHH
Confidence 34455555556555544332 2344588999998 8876554211 11 345677888899999999999999
Q ss_pred HHHHhh-cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 045672 296 HVHVLK-YDHDLILNNALLDMYCKCGSLEDAMSVFSRMI---QKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPN 371 (643)
Q Consensus 296 ~~~~~~-~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 371 (643)
+..+.+ .+.+..++..+...|.+.|++++|...|+++. ..+..+|..+...|...|++++|++.|+++.... |+
T Consensus 87 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~ 164 (368)
T 1fch_A 87 FEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PA 164 (368)
T ss_dssp HHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TT
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cC
Confidence 999999 66678899999999999999999999999874 3467889999999999999999999999998853 33
Q ss_pred HH-HHHH---------------HHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-
Q 045672 372 YI-TIVG---------------VLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM- 434 (643)
Q Consensus 372 ~~-t~~~---------------ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m- 434 (643)
.. .+.. .+..+...|++++|...|+.+.+.....++...+..+...|.+.|++++|.+.++++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 244 (368)
T 1fch_A 165 YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAAL 244 (368)
T ss_dssp TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 22 1111 233344889999999999999885222225788999999999999999999999887
Q ss_pred CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhC
Q 045672 435 PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 435 ~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 503 (643)
...| +..+|..+...+...|++++|+..++++++..|+++.++..++.+|.+.|++++|.+.++++.+.
T Consensus 245 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 245 SVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3334 57789999999999999999999999999999999999999999999999999999999998864
No 29
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.70 E-value=5.9e-15 Score=144.85 Aligned_cols=249 Identities=12% Similarity=0.020 Sum_probs=167.4
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCChhHHHHHHccCCCCCcchHHHHHHHHHhCCChhHHHH
Q 045672 82 KCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALE 161 (643)
Q Consensus 82 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~ 161 (643)
+.....|++..|....+......+.+.......+..+|...|+++.|...++....++..++..+...+...|+.++|++
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~ 86 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVA 86 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHH
Confidence 44456788888888877654432221123455678899999999999998887655677888999999999999999999
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHhchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCCcchH
Q 045672 162 LLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVW 241 (643)
Q Consensus 162 ~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~ 241 (643)
.++++...+..|+...+ +..+...|...|++++|.+.|++ ..+...+
T Consensus 87 ~l~~ll~~~~~P~~~~~-------------------------------~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~ 133 (291)
T 3mkr_A 87 ELDREMSRSVDVTNTTF-------------------------------LLMAASIYFYDQNPDAALRTLHQ--GDSLECM 133 (291)
T ss_dssp HHHHHHHSCCCCSCHHH-------------------------------HHHHHHHHHHTTCHHHHHHHHTT--CCSHHHH
T ss_pred HHHHHHhcccCCCCHHH-------------------------------HHHHHHHHHHCCCHHHHHHHHhC--CCCHHHH
Confidence 99999987766764433 23366788999999999999999 4577899
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHH---HHHHHHhcCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHH
Q 045672 242 NSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLT---SVLRACTGLALLELGTQVHVHVLK-YDHDLILNNALLDMYC 317 (643)
Q Consensus 242 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~---~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~ 317 (643)
..++..|.+.|++++|.+.|+++.+.. |+..... ..+..+...|++++|..+++.+.+ .+.+..+++.+..+|.
T Consensus 134 ~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~ 211 (291)
T 3mkr_A 134 AMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHM 211 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 999999999999999999999998864 5532111 122222334555555555555555 4444455555555555
Q ss_pred hcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHH-HHHHHHHHHH
Q 045672 318 KCGSLEDAMSVFSRMIQ---KDVISWSTMISGLAQNGYSQE-ALKLFESMKV 365 (643)
Q Consensus 318 ~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~-A~~l~~~m~~ 365 (643)
+.|++++|...|++... .+..+|..++..+...|+.++ +.++++++.+
T Consensus 212 ~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 212 AQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 55555555555554421 233445555555555554433 3344454444
No 30
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.70 E-value=1.3e-14 Score=142.49 Aligned_cols=266 Identities=8% Similarity=-0.011 Sum_probs=200.6
Q ss_pred HHHHcCCHHHHHHHHhhCCCCCc----chHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHh
Q 045672 216 IYAKLGELRNAECVFNEMPTRDL----VVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLEL 291 (643)
Q Consensus 216 ~y~~~g~~~~A~~~f~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 291 (643)
-....|++..|...++.....++ .....+..+|...|++++|+..++. .-+|+..++..+...+...++.+.
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHH
Confidence 34556888888888777655432 2344567788888888888776643 134566677777777777788888
Q ss_pred HHHHHHHHhh---cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 045672 292 GTQVHVHVLK---YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRI 368 (643)
Q Consensus 292 a~~i~~~~~~---~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 368 (643)
+.+.++.+.. .+.+...+..+...|...|++++|.+.|++ ..+...+..++..|.+.|+.++|++.|+++.+.
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-- 159 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ-- 159 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--
Confidence 8888877765 244556677788899999999999999998 567788999999999999999999999999885
Q ss_pred CCCHHHH---HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHH
Q 045672 369 KPNYITI---VGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTW 443 (643)
Q Consensus 369 ~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~ 443 (643)
.|+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|.+.++++ ...| +..+|
T Consensus 160 ~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l 237 (291)
T 3mkr_A 160 DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETL 237 (291)
T ss_dssp CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 4664321 12233344568999999999999984 4567888999999999999999999999886 3344 56788
Q ss_pred HHHHHHHHHcCCHHH-HHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHH
Q 045672 444 RALLGACKVHRNTDL-AICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAE 495 (643)
Q Consensus 444 ~~ll~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 495 (643)
..++..+...|+.++ +.++++++++++|+++.+. +...+.+.++++..
T Consensus 238 ~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 238 INLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVL 286 (291)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHH
Confidence 889988888998865 6789999999999987543 44555555555544
No 31
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.69 E-value=5.3e-16 Score=158.11 Aligned_cols=230 Identities=11% Similarity=0.015 Sum_probs=194.5
Q ss_pred CHHHHHHHHHHHhcCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHH
Q 045672 272 DQSTLTSVLRACTGLALLELGTQVHVHVLK-YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ---KDVISWSTMISGL 347 (643)
Q Consensus 272 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~ 347 (643)
+...+......+...|+++.|...+..+.+ .+.+..++..+...|.+.|++++|...|+++.+ .+..+|..+...|
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSY 143 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 345578888899999999999999999999 777788999999999999999999999998843 4677999999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCH-----------HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 045672 348 AQNGYSQEALKLFESMKVSRIKPNY-----------ITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMID 416 (643)
Q Consensus 348 ~~~g~~~~A~~l~~~m~~~g~~p~~-----------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 416 (643)
...|++++|+..|+++.+. .|+. ..+..+...+...|++++|..+|+++.+.....++...+..+..
T Consensus 144 ~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 9999999999999999874 3432 22334577889999999999999999985222226889999999
Q ss_pred HHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHH
Q 045672 417 LLGRAGKLQEAVKLIHEM-PYE-PDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVA 494 (643)
Q Consensus 417 ~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 494 (643)
.|.+.|++++|.+.++++ ... .+..+|..+...+...|++++|+..++++++..|+++.++..++.+|...|++++|.
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999987 333 467899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhC
Q 045672 495 EVRKTMRAR 503 (643)
Q Consensus 495 ~~~~~m~~~ 503 (643)
+.++++.+.
T Consensus 302 ~~~~~al~~ 310 (365)
T 4eqf_A 302 SNFLTALSL 310 (365)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999999864
No 32
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.68 E-value=1.4e-12 Score=145.69 Aligned_cols=429 Identities=14% Similarity=0.088 Sum_probs=273.7
Q ss_pred CCcchHHHHHHHHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCC-HHHH---------HHHHHHHHHcCCC
Q 045672 37 RNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHA-VEEA---------KLVHNHVLSGGFE 106 (643)
Q Consensus 37 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~~a---------~~~~~~~~~~g~~ 106 (643)
++...-..++...-+.++..--+..++.-...| ..|+.++|+|.+.|...++ ++.- +-+=+...+.++.
T Consensus 837 ~~~~~~~~lv~~~ekrnrLkll~p~LE~~~~~g-~~~~~~hnalakiyid~n~npe~fL~~n~~yd~~~vgkyce~rDp~ 915 (1630)
T 1xi4_A 837 RGQFSTDELVAEVEKRNRLKLLLPWLEARIHEG-CEEPATHNALAKIYIDSNNNPERFLRENPYYDSRVVGKYCEKRDPH 915 (1630)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHhccCCCHHHHhhccCcccHHHHHHHHHhcCcc
Confidence 344456667777777777777777788888888 5688899999988875443 3221 1111111111110
Q ss_pred C----------ch---------hHHHHHHHHHHcCCCh-----------hHHHHHHcc-----CCC-CCcchHHHHHHHH
Q 045672 107 P----------ET---------FLVNILLNMHVKFSLL-----------EEAQVLFDQ-----MPE-RNVVSWTTMISAY 150 (643)
Q Consensus 107 ~----------~~---------~~~~~li~~~~~~g~~-----------~~A~~~f~~-----m~~-~~~~~~~~li~~~ 150 (643)
. |. ..|-.+.+-+.+..+. +.=+++.+. +++ .|+.--...+++|
T Consensus 916 la~iay~~g~~d~eli~vt~~n~l~k~~arylv~r~d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf 995 (1630)
T 1xi4_A 916 LACVAYERGQCDLELINVCNENSLFKSLSRYLVRRKDPELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAF 995 (1630)
T ss_pred hHHHHhcccCCcHHHHHHHhcchhHHHHHHHHHHhcCHHHHHHHhcCCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHH
Confidence 0 00 1111222222222211 112234443 222 3444456778899
Q ss_pred HhCCChhHHHHHHHHHHHCCC--CCChhhHHHHHHHHhchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHH
Q 045672 151 CDAKMNDKALELLIFMLREGV--RPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAEC 228 (643)
Q Consensus 151 ~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 228 (643)
...|.+.+|++++++..-.+- .-+...-+.++....+. +..+..+.+.+.+ ..+ ...+...+...|.+++|..
T Consensus 996 ~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd-~~d---~~eIA~Iai~lglyEEAf~ 1070 (1630)
T 1xi4_A 996 MTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLD-NYD---APDIANIAISNELFEEAFA 1070 (1630)
T ss_pred HhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhh-hcc---HHHHHHHHHhCCCHHHHHH
Confidence 999999999999999884321 01223333344333222 2222222222221 111 2223334444444444444
Q ss_pred HHhhCCC-------------------------CCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 045672 229 VFNEMPT-------------------------RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRAC 283 (643)
Q Consensus 229 ~f~~~~~-------------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 283 (643)
+|++... .+..+|..+..++.+.|++++|++.|.+. -|...|..++.+|
T Consensus 1071 IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~ 1144 (1630)
T 1xi4_A 1071 IFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAA 1144 (1630)
T ss_pred HHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHH
Confidence 4444321 24567888888888888888888888542 4667778888888
Q ss_pred hcCChhHhHHHHHHHHhhcCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 045672 284 TGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESM 363 (643)
Q Consensus 284 ~~~~~~~~a~~i~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 363 (643)
.+.|+++++.+.+..+.+..++..+.+.++.+|++.+++++..... ..++...|..+...|...|++++|..+|...
T Consensus 1145 ~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA 1221 (1630)
T 1xi4_A 1145 NTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 1221 (1630)
T ss_pred HHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh
Confidence 8888888888888888875555555666888888888888644443 3456667777888888888888888888874
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHH
Q 045672 364 KVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTW 443 (643)
Q Consensus 364 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~ 443 (643)
..|..+...+.+.|++++|.+.+++. .+..+|..+..++...|++..|....... ..+...+
T Consensus 1222 ---------~ny~rLA~tLvkLge~q~AIEaarKA-------~n~~aWkev~~acve~~Ef~LA~~cgl~I--iv~~deL 1283 (1630)
T 1xi4_A 1222 ---------SNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLHI--VVHADEL 1283 (1630)
T ss_pred ---------hHHHHHHHHHHHhCCHHHHHHHHHHh-------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh--hcCHHHH
Confidence 36788888888888888888887765 33567777778888888888888766543 3455566
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHcc--CChhHHHHHHH
Q 045672 444 RALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANS--QKWDEVAEVRK 498 (643)
Q Consensus 444 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~a~~~~~ 498 (643)
..++..|...|.+++|+.+++..+.++|.+...|.-|+.+|++- ++..++.++|.
T Consensus 1284 eeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1284 EELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 68888899999999999999999999999888998888888664 45556666554
No 33
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.67 E-value=8.8e-17 Score=173.75 Aligned_cols=131 Identities=12% Similarity=0.078 Sum_probs=116.5
Q ss_pred CCchhHHhHHHHHHHhcCCHHHHHHHHhhc-------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 045672 303 DHDLILNNALLDMYCKCGSLEDAMSVFSRM-------IQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITI 375 (643)
Q Consensus 303 ~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m-------~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 375 (643)
..-..+||+||++|+++|++++|.++|++| ..||++|||+||.+|++.|+.++|.++|++|.+.|+.||.+||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 334568999999999999999999999776 3579999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCC-HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 045672 376 VGVLFACSHAGF-VEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM 434 (643)
Q Consensus 376 ~~ll~a~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 434 (643)
+++|.++++.|+ .++|.++|++|.+. |+.||..+|++++....|.+-++...++...+
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f 262 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHhCccc
Confidence 999999999998 57899999999996 99999999999999888876666555554443
No 34
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.65 E-value=5.2e-15 Score=147.87 Aligned_cols=261 Identities=10% Similarity=-0.031 Sum_probs=212.9
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 045672 207 VFVRSALIDIYAKLGELRNAECVFNEMPT---RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRAC 283 (643)
Q Consensus 207 ~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 283 (643)
...+..+...+...|++++|..+|+++.+ .+..+|..+...+...|++++|.+.|+++.+.. +.+..++..+...+
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 34456677889999999999999988753 366788899999999999999999999998863 34677888889999
Q ss_pred hcCChhHhHHHHHHHHhh-cCCchhHHhHH--------------HH-HHHhcCCHHHHHHHHhhcCC---CChhhHHHHH
Q 045672 284 TGLALLELGTQVHVHVLK-YDHDLILNNAL--------------LD-MYCKCGSLEDAMSVFSRMIQ---KDVISWSTMI 344 (643)
Q Consensus 284 ~~~~~~~~a~~i~~~~~~-~~~~~~~~~~L--------------i~-~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li 344 (643)
...|+++.|...+..+.+ .+.+...+..+ .. .+...|++++|...|+++.+ .+...|..+.
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 179 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLG 179 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 999999999999999998 44444444443 33 47788999999999998743 3677899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCH
Q 045672 345 SGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKL 424 (643)
Q Consensus 345 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 424 (643)
..|...|++++|++.++++.+.. +.+..++..+...+...|++++|...|+.+.+. .+.+...+..+...|.+.|++
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~g~~ 256 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDI--NPGYVRVMYNMAVSYSNMSQY 256 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhccH
Confidence 99999999999999999998753 345778889999999999999999999999874 344678899999999999999
Q ss_pred HHHHHHHHhC-CCCCC-------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 045672 425 QEAVKLIHEM-PYEPD-------------AVTWRALLGACKVHRNTDLAICAAKKILNLDP 471 (643)
Q Consensus 425 ~~A~~~~~~m-~~~p~-------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 471 (643)
++|.+.++++ ...|+ ...|..+..++...|++++|...+++.++..|
T Consensus 257 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 317 (327)
T 3cv0_A 257 DLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFA 317 (327)
T ss_dssp HHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHH
T ss_pred HHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 9999999877 22233 66888999999999999999999987766543
No 35
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.64 E-value=9.2e-14 Score=146.79 Aligned_cols=377 Identities=12% Similarity=-0.014 Sum_probs=179.7
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHHHHc--------CCCCchhHHHHHHHHHHcCCChhHHHHHHccCCC--------
Q 045672 74 SVTYAELIKCCLARHAVEEAKLVHNHVLSG--------GFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPE-------- 137 (643)
Q Consensus 74 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--------g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-------- 137 (643)
...|+.+...+...|+.++|.+.++..++. ..+....+|+.+..+|...|++++|...|++..+
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 445666666666667777776666665542 0112234566666677777777776666654421
Q ss_pred ---CCcchHHHHHHHHHh--CCChhHHHHHHHHHHHCCCCCChhh-HHHHHHHHhchhhH---H---HHHHHHHHhCCCC
Q 045672 138 ---RNVVSWTTMISAYCD--AKMNDKALELLIFMLREGVRPNMFT-YSAVLRACDSLIIL---R---QLHCGIIKVGFES 205 (643)
Q Consensus 138 ---~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~~~~---~---~~~~~~~~~g~~~ 205 (643)
....+++.+..++.. .+++++|++.|++..+. .|+... +..+..+....+.. + ..+...++.. +.
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~ 207 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PD 207 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SS
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Cc
Confidence 112344444444443 34567777777776654 344322 21111111111110 0 1111122211 11
Q ss_pred chhHHHHHHHHHH----HcCCHHHHHHHHhhCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC-CHHHHH
Q 045672 206 DVFVRSALIDIYA----KLGELRNAECVFNEMPT---RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAA-DQSTLT 277 (643)
Q Consensus 206 ~~~~~~~li~~y~----~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~ 277 (643)
+..++..+...+. ..|++++|.+.+++... .+..++..+...|...|++++|++.|.+..+. .| +..++.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~ 285 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLHC 285 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHHH
Confidence 2223333333332 23455666666655432 24455666666666666666666666666654 23 233333
Q ss_pred HHHHHHhcCChhHhHHHHHHHHhhcCCchhHHhHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHhcCCHH
Q 045672 278 SVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMI---QKDVISWSTMISGLAQNGYSQ 354 (643)
Q Consensus 278 ~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~ 354 (643)
.+..++...+....+.. ...........+..+.|...|+... ..+..+|..+...|...|+++
T Consensus 286 ~lg~~y~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~ 351 (472)
T 4g1t_A 286 QIGCCYRAKVFQVMNLR--------------ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYE 351 (472)
T ss_dssp HHHHHHHHHHHHHHHC--------------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhhhHH--------------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHH
Confidence 33332211110000000 0000001111233566777776653 335668889999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHH--HHHHHHH-HHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 045672 355 EALKLFESMKVSRIKPNYI--TIVGVLF-ACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLI 431 (643)
Q Consensus 355 ~A~~l~~~m~~~g~~p~~~--t~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 431 (643)
+|++.|++..+....|... .+..+.. ...+.|+.++|+..|.+..+ +.|+........ ..+.+++
T Consensus 352 ~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~~---------~~l~~~~ 419 (472)
T 4g1t_A 352 EAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKMK---------DKLQKIA 419 (472)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHHH---------HHHHHHH
T ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHHH---------HHHHHHH
Confidence 9999999998854333321 2222222 23578999999999998876 456543322222 2233333
Q ss_pred HhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 045672 432 HEM-PYE-PDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLS 481 (643)
Q Consensus 432 ~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 481 (643)
++. ... .+..+|..+...+...|++++|++.|+++++++|.+|.+..-++
T Consensus 420 ~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 420 KMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 332 122 35668999999999999999999999999999998887665554
No 36
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.60 E-value=1.3e-15 Score=164.71 Aligned_cols=147 Identities=15% Similarity=0.127 Sum_probs=122.1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHH---HCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHH
Q 045672 337 VISWSTMISGLAQNGYSQEALKLFESMK---VSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSC 413 (643)
Q Consensus 337 ~~~~~~li~~~~~~g~~~~A~~l~~~m~---~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 413 (643)
..+||++|++|++.|+.++|.++|++|. ..|+.||.+||++||.+|++.|++++|.++|++|.+. |+.||..+|++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~-G~~PDvvTYnt 205 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA-GLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-TCCCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCcHHHHHH
Confidence 4599999999999999999999998876 4589999999999999999999999999999999995 99999999999
Q ss_pred HHHHHHhcCC-HHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCC-----CcchHHHHHHH
Q 045672 414 MIDLLGRAGK-LQEAVKLIHEM---PYEPDAVTWRALLGACKVHRNTDLAICAAKKILN-LDPQ-----DPGTYILLSNI 483 (643)
Q Consensus 414 li~~~~~~g~-~~~A~~~~~~m---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~p~-----~~~~~~~l~~~ 483 (643)
||+++++.|+ .++|.++|++| ++.||..+|++++.++.+.+ .++..+++.. ..|+ ...+...|-+.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~----vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl 281 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT----VLKAVHKVKPTFSLPPQLPPPVNTSKLLRDV 281 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH----HHHHHGGGCCCCCCCCCCCCCCCCCTTTHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH----HHHHHHHhCcccCCCCCCcccccchHHHHHH
Confidence 9999999998 57899999999 89999999999997655442 3333333321 1121 13345578888
Q ss_pred HHccC
Q 045672 484 YANSQ 488 (643)
Q Consensus 484 ~~~~g 488 (643)
|++.+
T Consensus 282 ~s~d~ 286 (1134)
T 3spa_A 282 YAKDG 286 (1134)
T ss_dssp HCCCS
T ss_pred HccCC
Confidence 88776
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.59 E-value=1.6e-13 Score=131.82 Aligned_cols=219 Identities=15% Similarity=0.095 Sum_probs=163.5
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhhcCCchhHHhHHHHHHHh
Q 045672 239 VVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCK 318 (643)
Q Consensus 239 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~Li~~y~~ 318 (643)
..|..+...+...|++++|+..|++..+.. .+...+.. +...|..
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~---------------------------------~~~~~~~ 50 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNN---------------------------------RAAAEYE 50 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHH---------------------------------HHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHH---------------------------------HHHHHHH
Confidence 456677777888888888888888777765 45555544 4444555
Q ss_pred cCCHHHHHHHHhhcCCC------C----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 045672 319 CGSLEDAMSVFSRMIQK------D----VISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFV 388 (643)
Q Consensus 319 ~g~~~~A~~~~~~m~~~------~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 388 (643)
.|++++|...|++..+. + ...|..+...|...|++++|+..|++.... .|+. ..+...|++
T Consensus 51 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~ 121 (258)
T 3uq3_A 51 KGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNA 121 (258)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHH
Confidence 55555555555544221 1 456777778888888888888888888773 4553 234556778
Q ss_pred HHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045672 389 EDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PY-EPDAVTWRALLGACKVHRNTDLAICAAKKI 466 (643)
Q Consensus 389 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 466 (643)
++|...++.+.+ ..+.+...+..+...+.+.|++++|.+.++++ .. +.+..+|..+...+...|++++|+..++++
T Consensus 122 ~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 199 (258)
T 3uq3_A 122 EKELKKAEAEAY--VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKA 199 (258)
T ss_dssp HHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 888888888876 22335667888888888999999999988877 22 235778888888899999999999999999
Q ss_pred HhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhC
Q 045672 467 LNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 467 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 503 (643)
++..|+++.++..++.+|...|++++|.+.+++..+.
T Consensus 200 l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 200 IEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999888753
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.58 E-value=9.7e-14 Score=133.35 Aligned_cols=238 Identities=13% Similarity=0.040 Sum_probs=166.5
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHhhCCC--CCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCC--CCCHHHHHHHHHH
Q 045672 207 VFVRSALIDIYAKLGELRNAECVFNEMPT--RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGF--AADQSTLTSVLRA 282 (643)
Q Consensus 207 ~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~a 282 (643)
...+..+...|...|++++|...|++..+ .+...|..+...|...|++++|++.|++..+... .|+...
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~------- 77 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKV------- 77 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHH-------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHH-------
Confidence 46788899999999999999999987533 6778899999999999999999999999876421 112100
Q ss_pred HhcCChhHhHHHHHHHHhhcCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 045672 283 CTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFES 362 (643)
Q Consensus 283 ~~~~~~~~~a~~i~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 362 (643)
...++..+...|.+.|++++|...|++..+.+.. ...+...|++++|+..+++
T Consensus 78 ----------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~~~~~ 130 (258)
T 3uq3_A 78 ----------------------ISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKELKKAEA 130 (258)
T ss_dssp ----------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHHHHHHH
Confidence 0123344555556666666666666555321111 2345556677777777777
Q ss_pred HHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-C
Q 045672 363 MKVSRIKPN-YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-D 439 (643)
Q Consensus 363 m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~ 439 (643)
+... .|+ ...+..+...+...|++++|...++.+.+. .+.+...+..+...|.+.|++++|.+.++++ ...| +
T Consensus 131 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~ 206 (258)
T 3uq3_A 131 EAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF 206 (258)
T ss_dssp HHHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHH
Confidence 7663 333 455666677777778888888888777763 2345667777888888888888888888776 2233 4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------CCCcchHHHHHH
Q 045672 440 AVTWRALLGACKVHRNTDLAICAAKKILNLD------PQDPGTYILLSN 482 (643)
Q Consensus 440 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~ 482 (643)
...|..+...+...|++++|...+++++++. |++...+..+..
T Consensus 207 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 207 VRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHH
Confidence 6678888888888899999999999988887 776655555543
No 39
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.58 E-value=1.3e-13 Score=129.01 Aligned_cols=195 Identities=14% Similarity=0.060 Sum_probs=154.2
Q ss_pred CCchhHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 045672 303 DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ---KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPN-YITIVGV 378 (643)
Q Consensus 303 ~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~l 378 (643)
+++...+..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++..+. .|+ ...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 45566777888889999999999999998743 35678888999999999999999999998875 454 6678888
Q ss_pred HHHHhcc-----------CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHH
Q 045672 379 LFACSHA-----------GFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEPDAVTWRAL 446 (643)
Q Consensus 379 l~a~~~~-----------g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l 446 (643)
...+... |++++|...|++..+. -+.+...+..+..+|...|++++|.+.|++. ....+...|..+
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 157 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Confidence 8888888 9999999999999873 2335778889999999999999999999887 222678889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHH
Q 045672 447 LGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMR 501 (643)
Q Consensus 447 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 501 (643)
...+...|++++|+..++++++.+|+++.++..++.++...|++++|.+.+++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999887643
No 40
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.56 E-value=2.1e-13 Score=132.47 Aligned_cols=240 Identities=10% Similarity=-0.057 Sum_probs=183.2
Q ss_pred hCCChhHHHHHHHHHHHcCCC---CCHHHHHHHHHHHhcCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCCHHHH
Q 045672 250 QNSDVDEALNLYKRMKRAGFA---ADQSTLTSVLRACTGLALLELGTQVHVHVLK-YDHDLILNNALLDMYCKCGSLEDA 325 (643)
Q Consensus 250 ~~g~~~~A~~~~~~m~~~g~~---p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~~~~A 325 (643)
..|++++|+..|+++.+.... .+..++..+...+...|+++.|...+..+.+ .+.+..++..+...|...|++++|
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHH
Confidence 346778888888877765321 1345666777777788888888888888877 555677888889999999999999
Q ss_pred HHHHhhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhc
Q 045672 326 MSVFSRMIQ---KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFY 402 (643)
Q Consensus 326 ~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 402 (643)
...|++..+ .+...|..+...|...|++++|+..|+++.+. .|+.......+..+...|++++|...+......
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~- 173 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK- 173 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 999988743 35778999999999999999999999999874 566555555555667779999999999888774
Q ss_pred CCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcch
Q 045672 403 GIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEPD-----AVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGT 476 (643)
Q Consensus 403 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 476 (643)
.+++...+ .++..+...++.++|.+.+++. ...|+ ..+|..+...+...|++++|...++++++.+|++...
T Consensus 174 -~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 251 (275)
T 1xnf_A 174 -SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE 251 (275)
T ss_dssp -SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH
T ss_pred -CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH
Confidence 33444444 4777788889999999999876 32232 4678888899999999999999999999999977544
Q ss_pred HHHHHHHHHccCChhHHHHHH
Q 045672 477 YILLSNIYANSQKWDEVAEVR 497 (643)
Q Consensus 477 ~~~l~~~~~~~g~~~~a~~~~ 497 (643)
+ ..++...|++++|.+-+
T Consensus 252 ~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 252 H---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp H---HHHHHHHHHHHHC----
T ss_pred H---HHHHHHHHHHHhhHHHH
Confidence 3 66778888998887765
No 41
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.53 E-value=6.7e-13 Score=128.77 Aligned_cols=243 Identities=15% Similarity=0.032 Sum_probs=134.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHH
Q 045672 209 VRSALIDIYAKLGELRNAECVFNEMPT---RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAAD--QSTLTSVLRAC 283 (643)
Q Consensus 209 ~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~ 283 (643)
........|...|++++|...|++..+ .+...|..+...|...|++++|++.|++..+.+..|+ ...+..+...+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 344566677777888888888776543 2445777777778888888888888877776321221 12245555555
Q ss_pred hcCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHhcCCHHHHHHH
Q 045672 284 TGLALLELGTQVHVHVLK-YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQK---DVISWSTMISGLAQNGYSQEALKL 359 (643)
Q Consensus 284 ~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l 359 (643)
...|+++.|...+..+.+ .+.+..++..+...|...|++++|...|++..+. +...|..+...+...+++++|++.
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555 3334445555555555555555555555554321 233344343122222345555555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCC---HHHHHHHHHhC--
Q 045672 360 FESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGK---LQEAVKLIHEM-- 434 (643)
Q Consensus 360 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m-- 434 (643)
|++..+. .|+ +...+..+...+...|+ +++|...++++
T Consensus 165 ~~~a~~~--~p~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 207 (272)
T 3u4t_A 165 FVKVLEL--KPN-----------------------------------IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIE 207 (272)
T ss_dssp HHHHHHH--STT-----------------------------------CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHH
T ss_pred HHHHHHh--Ccc-----------------------------------chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHH
Confidence 5444442 222 23333344444444443 33333333332
Q ss_pred --CCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccC
Q 045672 435 --PYEPD------AVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQ 488 (643)
Q Consensus 435 --~~~p~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 488 (643)
...|+ ..+|..+...+...|++++|...++++++++|+++.+...+.......+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 208 VCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 01122 2456677778888999999999999999999999877777766555443
No 42
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.50 E-value=5.8e-12 Score=131.79 Aligned_cols=368 Identities=11% Similarity=0.034 Sum_probs=192.3
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCCh---hHHHHHHccCCCCCcchHHHHHHHHHhCC--
Q 045672 80 LIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLL---EEAQVLFDQMPERNVVSWTTMISAYCDAK-- 154 (643)
Q Consensus 80 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~f~~m~~~~~~~~~~li~~~~~~g-- 154 (643)
+...+.+.|++++|.+.+....+.|. ...+..|..+|...|+. ++|...|++..+.+...+..|...+...|
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC---CTGGGTCC----------------------------CHHHHHHHHHTC--C
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC
Confidence 34445556667777777777666552 22333455555556666 67777776666555556666666444444
Q ss_pred ---ChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHH------HHHHHHHHhCCCCchhHHHHHHHHHHHcC----
Q 045672 155 ---MNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR------QLHCGIIKVGFESDVFVRSALIDIYAKLG---- 221 (643)
Q Consensus 155 ---~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~------~~~~~~~~~g~~~~~~~~~~li~~y~~~g---- 221 (643)
++++|+..|++..+.|... .+..+-..+...+... +........| +......|...|...+
T Consensus 86 ~~~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~ 159 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQ 159 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGG
T ss_pred CCcCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCccc
Confidence 5567777777776654322 2222222222111111 1111122222 2334445566666666
Q ss_pred CHHHHHHHHhhCCCCCcchHHHHHHHHHhCC---ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHH
Q 045672 222 ELRNAECVFNEMPTRDLVVWNSIIGGFAQNS---DVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVH 298 (643)
Q Consensus 222 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~ 298 (643)
..+.+..++......++.++..|...|...| +.++|++.|++..+.| .++...+
T Consensus 160 ~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~---------------------- 216 (452)
T 3e4b_A 160 HLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRV---------------------- 216 (452)
T ss_dssp GHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHH----------------------
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHH----------------------
Confidence 3444555555555556667777777777777 7777777777776665 2233322
Q ss_pred HhhcCCchhHHhHHHHHHHhc----CCHHHHHHHHhhcCCCChhhHHHHHHH-H--HhcCCHHHHHHHHHHHHHCCCCCC
Q 045672 299 VLKYDHDLILNNALLDMYCKC----GSLEDAMSVFSRMIQKDVISWSTMISG-L--AQNGYSQEALKLFESMKVSRIKPN 371 (643)
Q Consensus 299 ~~~~~~~~~~~~~Li~~y~~~----g~~~~A~~~~~~m~~~~~~~~~~li~~-~--~~~g~~~~A~~l~~~m~~~g~~p~ 371 (643)
..|..+|... ++.++|...|+.....+...+..+... | ...|+.++|++.|++..+.| +
T Consensus 217 -----------~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~ 282 (452)
T 3e4b_A 217 -----------DSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---Q 282 (452)
T ss_dssp -----------HHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---C
T ss_pred -----------HHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---C
Confidence 3344444333 577777777777663355566666665 3 35678888888888877765 4
Q ss_pred HHHHHHHHHHHhccC-----CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHH
Q 045672 372 YITIVGVLFACSHAG-----FVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGR----AGKLQEAVKLIHEMPYEPDAVT 442 (643)
Q Consensus 372 ~~t~~~ll~a~~~~g-----~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~ 442 (643)
...+..+...|. .| +.++|...|+... +-+...+..|..+|.. ..++++|.+.|++.-...+...
T Consensus 283 ~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A 356 (452)
T 3e4b_A 283 PRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSA 356 (452)
T ss_dssp HHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTH
T ss_pred HHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHH
Confidence 455555555554 44 7888888777664 3355566666666655 3378888888877622223334
Q ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH--HccCChhHHHHHHHHHH
Q 045672 443 WRALLGACKV----HRNTDLAICAAKKILNLDPQDPGTYILLSNIY--ANSQKWDEVAEVRKTMR 501 (643)
Q Consensus 443 ~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~a~~~~~~m~ 501 (643)
...|...|.. ..+.++|...++++.+.++.+ +...+..+. ...++.++|.++.++-+
T Consensus 357 ~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~--a~~~l~~l~~~~~~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 357 DFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPE--ANDLATQLEAPLTPAQRAEGQRLVQQEL 419 (452)
T ss_dssp HHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHH--HHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 4444444442 457888888888887776543 333333332 23345556666665544
No 43
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.50 E-value=6.4e-12 Score=120.27 Aligned_cols=203 Identities=11% Similarity=0.033 Sum_probs=117.0
Q ss_pred cchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhhcCCchhHHhHHHHHHH
Q 045672 238 LVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYC 317 (643)
Q Consensus 238 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~Li~~y~ 317 (643)
...|..+...+...|++++|++.|+++.+.. +.+.. .+..+...|.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~---------------------------------~~~~la~~~~ 82 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSAD---------------------------------AHAALAVVFQ 82 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHH---------------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHH---------------------------------HHHHHHHHHH
Confidence 3455566666666666666666666665532 11222 2344445555
Q ss_pred hcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHH
Q 045672 318 KCGSLEDAMSVFSRMI---QKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPN-YITIVGVLFACSHAGFVEDGWN 393 (643)
Q Consensus 318 ~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~ 393 (643)
+.|++++|.+.|+++. ..+...|..+...|...|++++|++.|+++...+..|+ ...+..+...+...|++++|..
T Consensus 83 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 162 (252)
T 2ho1_A 83 TEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKE 162 (252)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 5555555555555542 12445566666666666666666666666655323343 4455556666666667777766
Q ss_pred HHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 045672 394 HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYE-PDAVTWRALLGACKVHRNTDLAICAAKKILNLDP 471 (643)
Q Consensus 394 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 471 (643)
.++.+.+. .+.+...+..+...|.+.|++++|.+.++++ ... .+...+..+...+...|+.++|...++++++..|
T Consensus 163 ~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p 240 (252)
T 2ho1_A 163 YFEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP 240 (252)
T ss_dssp HHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence 66666653 1234555666666666666666666666655 222 2444555566666666777777777777776666
Q ss_pred CCcch
Q 045672 472 QDPGT 476 (643)
Q Consensus 472 ~~~~~ 476 (643)
+++..
T Consensus 241 ~~~~~ 245 (252)
T 2ho1_A 241 GSLEY 245 (252)
T ss_dssp TSHHH
T ss_pred CCHHH
Confidence 65543
No 44
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.49 E-value=5.5e-12 Score=118.14 Aligned_cols=196 Identities=10% Similarity=-0.013 Sum_probs=147.4
Q ss_pred hhHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 045672 306 LILNNALLDMYCKCGSLEDAMSVFSRMIQ---KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFAC 382 (643)
Q Consensus 306 ~~~~~~Li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 382 (643)
..++..+...|...|++++|...|+++.+ .+...|..+...|...|++++|++.|+++.... +.+..++..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 44556677777788888888888776632 345677778888888888888888888877643 33566777777788
Q ss_pred hcc-CCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHH
Q 045672 383 SHA-GFVEDGWNHFKSMKKFYGIDPG-REHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDL 458 (643)
Q Consensus 383 ~~~-g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~ 458 (643)
... |++++|...++.+.+ .+..|+ ...+..+...+.+.|++++|.+.++++ ...| +...|..+...+...|++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHH
Confidence 888 888888888888776 233333 566777888888888888888888776 2223 46677778888888888888
Q ss_pred HHHHHHHHHhcCC-CCcchHHHHHHHHHccCChhHHHHHHHHHHhC
Q 045672 459 AICAAKKILNLDP-QDPGTYILLSNIYANSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 459 a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 503 (643)
|...++++++..| +++..+..++..+...|+.++|..+++.+.+.
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 8888888888888 78778888888888888888888888887653
No 45
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.48 E-value=4.1e-12 Score=121.67 Aligned_cols=197 Identities=9% Similarity=-0.056 Sum_probs=170.8
Q ss_pred hhHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 045672 306 LILNNALLDMYCKCGSLEDAMSVFSRMIQ---KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFAC 382 (643)
Q Consensus 306 ~~~~~~Li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 382 (643)
...+..+...|...|++++|...|+++.+ .+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 45567788889999999999999988743 467789999999999999999999999998753 33577888889999
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHH
Q 045672 383 SHAGFVEDGWNHFKSMKKFYGIDP-GREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLA 459 (643)
Q Consensus 383 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a 459 (643)
...|++++|.++++.+.+ .+..| +...+..+...|.+.|++++|.+.++++ ...| +...|..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999876 23445 4667888999999999999999999887 2233 577888999999999999999
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCC
Q 045672 460 ICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARG 504 (643)
Q Consensus 460 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 504 (643)
...++++++..|++...+..++.+|...|++++|.++++++.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999998754
No 46
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.48 E-value=1.1e-12 Score=124.69 Aligned_cols=165 Identities=12% Similarity=0.051 Sum_probs=69.3
Q ss_pred HHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 045672 312 LLDMYCKCGSLEDAMSVFSRMI---QKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFV 388 (643)
Q Consensus 312 Li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 388 (643)
+...|.+.|++++|...|+++. ..+...|..+...+...|++++|++.|+++.+.. +.+...+..+...+...|++
T Consensus 63 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~ 141 (243)
T 2q7f_A 63 FANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQP 141 (243)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccH
Confidence 3333444444444444444331 1133344444444444444444444444444322 12233344444444444444
Q ss_pred HHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045672 389 EDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PY-EPDAVTWRALLGACKVHRNTDLAICAAKKI 466 (643)
Q Consensus 389 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 466 (643)
++|...++.+.+. .+.+...+..+...|.+.|++++|.+.++++ .. ..+..+|..+...+...|++++|...++++
T Consensus 142 ~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 219 (243)
T 2q7f_A 142 KLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKA 219 (243)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 4444444444432 1223334444444444444444444444433 11 112334444444444444444444444444
Q ss_pred HhcCCCCcchHHH
Q 045672 467 LNLDPQDPGTYIL 479 (643)
Q Consensus 467 ~~~~p~~~~~~~~ 479 (643)
++..|+++.++..
T Consensus 220 ~~~~p~~~~~~~~ 232 (243)
T 2q7f_A 220 IDIQPDHMLALHA 232 (243)
T ss_dssp HHHCTTCHHHHHH
T ss_pred HccCcchHHHHHH
Confidence 4444444444333
No 47
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.47 E-value=1.6e-12 Score=123.62 Aligned_cols=197 Identities=12% Similarity=0.100 Sum_probs=155.8
Q ss_pred chhHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 045672 305 DLILNNALLDMYCKCGSLEDAMSVFSRMIQ---KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFA 381 (643)
Q Consensus 305 ~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 381 (643)
....+..+...+...|++++|...|+++.+ .+...|..+...+...|++++|++.|+++.+.. +.+...+..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 345566778888899999999999988743 356788899999999999999999999998753 3457788888999
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHH
Q 045672 382 CSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PY-EPDAVTWRALLGACKVHRNTDLA 459 (643)
Q Consensus 382 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a 459 (643)
+...|++++|.++++.+.+. .+.+...+..+...|.+.|++++|.+.++++ .. ..+...|..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999874 3456778999999999999999999999887 22 24677888899999999999999
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCC
Q 045672 460 ICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARG 504 (643)
Q Consensus 460 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 504 (643)
+..++++++..|+++.++..++.+|...|++++|.+.++++.+..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 999999999999999999999999999999999999999998743
No 48
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.46 E-value=1.5e-11 Score=115.19 Aligned_cols=208 Identities=11% Similarity=0.005 Sum_probs=149.4
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhhcCCchhHHhHHHHHH
Q 045672 237 DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMY 316 (643)
Q Consensus 237 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~Li~~y 316 (643)
+...|..+...+...|++++|++.|+++.+.. | .+...+..+...|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~--------------------------------~~~~~~~~l~~~~ 52 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD--P--------------------------------KNELAWLVRAEIY 52 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T--------------------------------TCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--c--------------------------------cchHHHHHHHHHH
Confidence 34556666777777777777777777666542 2 2223345556666
Q ss_pred HhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHH
Q 045672 317 CKCGSLEDAMSVFSRMI---QKDVISWSTMISGLAQN-GYSQEALKLFESMKVSRIKPN-YITIVGVLFACSHAGFVEDG 391 (643)
Q Consensus 317 ~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a 391 (643)
...|++++|...|+++. ..+...|..+...+... |++++|+..|+++.+.+..|+ ...+..+...+...|++++|
T Consensus 53 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 132 (225)
T 2vq2_A 53 QYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLA 132 (225)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHH
Confidence 66777777777776653 23556777778888888 888888888888877333444 56677777888888888888
Q ss_pred HHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 045672 392 WNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYE--PDAVTWRALLGACKVHRNTDLAICAAKKILN 468 (643)
Q Consensus 392 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 468 (643)
...++.+.+. .+.+...+..+...|.+.|++++|.+.++++ ... .+...+..+...+...|+.+.|...++.+.+
T Consensus 133 ~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 133 EAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 8888888763 2335777888888899999999999888876 222 3566677777778899999999999999999
Q ss_pred cCCCCcchHHHH
Q 045672 469 LDPQDPGTYILL 480 (643)
Q Consensus 469 ~~p~~~~~~~~l 480 (643)
..|+++.....+
T Consensus 211 ~~p~~~~~~~~l 222 (225)
T 2vq2_A 211 NFPYSEELQTVL 222 (225)
T ss_dssp HCTTCHHHHHHH
T ss_pred hCCCCHHHHHHh
Confidence 999887655443
No 49
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.45 E-value=5.3e-12 Score=118.00 Aligned_cols=191 Identities=15% Similarity=0.022 Sum_probs=89.3
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHH
Q 045672 239 VVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK-YDHDLILNNALLDMYC 317 (643)
Q Consensus 239 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~ 317 (643)
..|..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...++.+.+ .+.+...+..+...|.
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~ 84 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYV 84 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 334444444444444444444444444321 11333333344444444444444444444444 2223334444555555
Q ss_pred hc-----------CCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 045672 318 KC-----------GSLEDAMSVFSRMIQ---KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACS 383 (643)
Q Consensus 318 ~~-----------g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 383 (643)
+. |++++|...|++..+ .+...|..+...|...|++++|+..|++..+.. .+...+..+..++.
T Consensus 85 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~ 162 (217)
T 2pl2_A 85 ALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYL 162 (217)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
T ss_pred HhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHH
Confidence 55 556666655555422 234455555666666666666666666665544 45555556666666
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 045672 384 HAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM 434 (643)
Q Consensus 384 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 434 (643)
..|++++|...|+...+. .+.+...+..+...+.+.|++++|.+.+++.
T Consensus 163 ~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 163 SMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC--------------
T ss_pred HcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 666666666666666552 2224455555666666666666666655543
No 50
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.45 E-value=8.5e-12 Score=130.53 Aligned_cols=311 Identities=12% Similarity=0.044 Sum_probs=126.0
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCH--
Q 045672 146 MISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGEL-- 223 (643)
Q Consensus 146 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~-- 223 (643)
+...+.+.|++++|+++|++..+.|- ++.. . .|..+|...|+.
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~-~~A~--~--------------------------------~Lg~~y~~~g~~~d 53 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGY-SEAQ--V--------------------------------GLADIQVGTRDPAQ 53 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC-CTGG--G--------------------------------TCC-----------
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCC-HHHH--H--------------------------------HHHHHHHccCCCCC
Confidence 55667788999999999999877652 2221 1 122223333444
Q ss_pred -HHHHHHHhhCCCCCcchHHHHHHHHHhCC-----ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHH
Q 045672 224 -RNAECVFNEMPTRDLVVWNSIIGGFAQNS-----DVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHV 297 (643)
Q Consensus 224 -~~A~~~f~~~~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~ 297 (643)
++|...|++..+.++..+..+...+...+ ++++|+.+|++..+.|... .+..+...+...+..+.+...+.
T Consensus 54 ~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~ 130 (452)
T 3e4b_A 54 IKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQ 130 (452)
T ss_dssp -----------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHH
Confidence 55555555544444444444444333333 4445555555555443211 23333333333333222222222
Q ss_pred HHhh--cCCchhHHhHHHHHHHhcC----CHHHHHHHHhhcCCCChhhHHHHHHHHHhcC---CHHHHHHHHHHHHHCCC
Q 045672 298 HVLK--YDHDLILNNALLDMYCKCG----SLEDAMSVFSRMIQKDVISWSTMISGLAQNG---YSQEALKLFESMKVSRI 368 (643)
Q Consensus 298 ~~~~--~~~~~~~~~~Li~~y~~~g----~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~ 368 (643)
...+ -..+......|...|...+ ..+.+..+++.....+...+..+...|...| +.++|++.|++..+.|
T Consensus 131 ~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g- 209 (452)
T 3e4b_A 131 QISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG- 209 (452)
T ss_dssp HHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-
Confidence 2222 1122333344444444444 2333333344444444444444555555555 4555555555554443
Q ss_pred CCCHHHHHHHHHHHhcc----CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH-H--HhcCCHHHHHHHHHhCCCCCCHH
Q 045672 369 KPNYITIVGVLFACSHA----GFVEDGWNHFKSMKKFYGIDPGREHYSCMIDL-L--GRAGKLQEAVKLIHEMPYEPDAV 441 (643)
Q Consensus 369 ~p~~~t~~~ll~a~~~~----g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~p~~~ 441 (643)
.++...+..+...|... ++.++|...|+... +-+...+..|..+ | ...|++++|.+.|++.-...+..
T Consensus 210 ~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~ 284 (452)
T 3e4b_A 210 TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPR 284 (452)
T ss_dssp CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHH
Confidence 23333223333333322 34555555554443 1223333333333 2 23445555555554441112333
Q ss_pred HHHHHHHHHHHcC-----CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHc----cCChhHHHHHHHHHHhCC
Q 045672 442 TWRALLGACKVHR-----NTDLAICAAKKILNLDPQDPGTYILLSNIYAN----SQKWDEVAEVRKTMRARG 504 (643)
Q Consensus 442 ~~~~ll~~~~~~g-----~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g 504 (643)
.+..|...|. .| ++++|+..|+++. |.++.++..|+.+|.. ..++++|.+.+++..+.|
T Consensus 285 A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 352 (452)
T 3e4b_A 285 AELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG 352 (452)
T ss_dssp HHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC
Confidence 4443333333 33 5555555555444 4444455555554444 224455555555444433
No 51
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.45 E-value=5e-10 Score=121.27 Aligned_cols=423 Identities=8% Similarity=0.030 Sum_probs=266.0
Q ss_pred CCcchHHHHHHHHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCC---HHHHHHHHHHHHHcCC-CCchhHH
Q 045672 37 RNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHA---VEEAKLVHNHVLSGGF-EPETFLV 112 (643)
Q Consensus 37 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~g~-~~~~~~~ 112 (643)
.|..+|..+|..+.+.+.++.+..+|+++... .+.....|..-+..-.+.++ ++.+..+|+..+...+ +|++..|
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 36777888887777777777788888877764 24455666666666666677 7788888887777541 3566666
Q ss_pred HHHHHHHHcCCCh--------hHHHHHHccCC------CC-CcchHHHHHHHHHh---------CCChhHHHHHHHHHHH
Q 045672 113 NILLNMHVKFSLL--------EEAQVLFDQMP------ER-NVVSWTTMISAYCD---------AKMNDKALELLIFMLR 168 (643)
Q Consensus 113 ~~li~~~~~~g~~--------~~A~~~f~~m~------~~-~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~ 168 (643)
..-+....+.++. +...++|+... .+ +...|...+..... +++.+.+..+|++.+.
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 6666554444433 22335665421 12 23456666654332 2345667777777763
Q ss_pred CCCCCChhhHHHHHHHHhchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhh-------CCC------
Q 045672 169 EGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNE-------MPT------ 235 (643)
Q Consensus 169 ~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~-------~~~------ 235 (643)
. |-.. +..+...+... .+. + +..+...++.- ...+++.|...+.+ +..
T Consensus 223 i---P~~~-~~~~w~~Y~~f----------e~~-~--~~~~a~~~~~e--~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~ 283 (679)
T 4e6h_A 223 Q---PMDC-LESMWQRYTQW----------EQD-V--NQLTARRHIGE--LSAQYMNARSLYQDWLNITKGLKRNLPITL 283 (679)
T ss_dssp S---CCSS-HHHHHHHHHHH----------HHH-H--CTTTHHHHHHH--HHHHHHHHHHHHHHHHHHTTTCCCCCCSSS
T ss_pred C---ccHH-HHHHHHHHHHH----------HHh-c--CcchHHHHHHH--hhHHHHHHHHHHHHHHHHHHhHhhcccccc
Confidence 2 2211 11111111100 000 0 00000011110 01123333333322 110
Q ss_pred --------C--C------cchHHHHHHHHHhCCC-------hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhH
Q 045672 236 --------R--D------LVVWNSIIGGFAQNSD-------VDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELG 292 (643)
Q Consensus 236 --------~--~------~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 292 (643)
| + ...|...+.---.++. .+.+..+|++.+.. .+-+...|...+.-+...|+.+.|
T Consensus 284 ~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a 362 (679)
T 4e6h_A 284 NQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTV 362 (679)
T ss_dssp TTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTH
T ss_pred ccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHH
Confidence 0 1 1346666654444331 23456678877775 344677777777777788888899
Q ss_pred H-HHHHHHhh-cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCC-------------C------------ChhhHHHHHH
Q 045672 293 T-QVHVHVLK-YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ-------------K------------DVISWSTMIS 345 (643)
Q Consensus 293 ~-~i~~~~~~-~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~-------------~------------~~~~~~~li~ 345 (643)
. .+++.+.. .+.+..++-.++...-+.|+++.|+.+|+++.. | ....|-..+.
T Consensus 363 ~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~ 442 (679)
T 4e6h_A 363 ITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMN 442 (679)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHH
Confidence 6 99999999 777778888899999999999999999998753 2 1236888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhc-cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCC
Q 045672 346 GLAQNGYSQEALKLFESMKVS-RIKPNYITIVGVLFACSH-AGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGK 423 (643)
Q Consensus 346 ~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~a~~~-~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 423 (643)
...+.|..+.|..+|.+..+. + .+....|......-.+ .++.+.|..+|+...+.+ +.+...+...++.....|+
T Consensus 443 ~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~~~~ 519 (679)
T 4e6h_A 443 TMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF--ATDGEYINKYLDFLIYVNE 519 (679)
T ss_dssp HHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHhCCC
Confidence 888889999999999999875 2 1122333322222223 355899999999999853 3456667888998999999
Q ss_pred HHHHHHHHHhC-CCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 045672 424 LQEAVKLIHEM-PYEP----DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIY 484 (643)
Q Consensus 424 ~~~A~~~~~~m-~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 484 (643)
.+.|..+|++. ...| ....|...+.--..+|+.+.+..+.+++.+..|+++ ....+++-|
T Consensus 520 ~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~-~~~~f~~ry 584 (679)
T 4e6h_A 520 ESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN-KLEEFTNKY 584 (679)
T ss_dssp HHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC-HHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc-HHHHHHHHh
Confidence 99999999987 2223 345899999999999999999999999999999875 444444444
No 52
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.45 E-value=3.7e-11 Score=116.68 Aligned_cols=223 Identities=12% Similarity=0.025 Sum_probs=167.6
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhhcCCchhHHhHHHHHH
Q 045672 237 DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMY 316 (643)
Q Consensus 237 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~Li~~y 316 (643)
+..++..+...|...|++++|++.|++..+.+ +...+ ..+...|
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~---------------------------------~~lg~~~ 48 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGC---------------------------------FNLGVLY 48 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHH---------------------------------HHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHH---------------------------------HHHHHHH
Confidence 55667777788888888888888888777632 22333 3455556
Q ss_pred Hh----cCCHHHHHHHHhhcCC-CChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc---
Q 045672 317 CK----CGSLEDAMSVFSRMIQ-KDVISWSTMISGLAQ----NGYSQEALKLFESMKVSRIKPNYITIVGVLFACSH--- 384 (643)
Q Consensus 317 ~~----~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~--- 384 (643)
.. .|++++|...|++..+ .+..++..+...|.. .+++++|++.|++..+.+ +...+..+...+..
T Consensus 49 ~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~ 125 (273)
T 1ouv_A 49 YQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKV 125 (273)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSS
T ss_pred HcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCC
Confidence 66 7777777777766533 256677777777877 888888888888887764 56677777777777
Q ss_pred -cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCC
Q 045672 385 -AGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGR----AGKLQEAVKLIHEMPYEPDAVTWRALLGACKV----HRN 455 (643)
Q Consensus 385 -~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~ 455 (643)
.+++++|...|+...+. + +...+..+...|.+ .+++++|.+.+++.-...+...+..+...+.. .++
T Consensus 126 ~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~ 201 (273)
T 1ouv_A 126 VTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKN 201 (273)
T ss_dssp SCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCC
T ss_pred cccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCcc
Confidence 88888888888888773 3 45667777777877 88888888888776222456677777788888 889
Q ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHHc----cCChhHHHHHHHHHHhCC
Q 045672 456 TDLAICAAKKILNLDPQDPGTYILLSNIYAN----SQKWDEVAEVRKTMRARG 504 (643)
Q Consensus 456 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g 504 (643)
+++|+..++++.+.+| +..+..++.+|.. .+++++|.+.+++..+.|
T Consensus 202 ~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 202 FKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 9999999999988876 5688889999988 899999999999888765
No 53
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.45 E-value=5.9e-12 Score=127.78 Aligned_cols=244 Identities=9% Similarity=0.078 Sum_probs=183.3
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCh-hHhHHHHHHHHhh-cCCchhHHhHHHHHH
Q 045672 239 VVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLAL-LELGTQVHVHVLK-YDHDLILNNALLDMY 316 (643)
Q Consensus 239 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~-~~~a~~i~~~~~~-~~~~~~~~~~Li~~y 316 (643)
..|+.+...+.+.|++++|++.|++..+.. +-+...|..+..++...|+ +++|...+..+++ .+.+..+|+.+..+|
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 456777777777788888888888777742 2245666777777777775 8888888888777 555677788888888
Q ss_pred HhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-cCCHHHH-
Q 045672 317 CKCGSLEDAMSVFSRMIQ---KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSH-AGFVEDG- 391 (643)
Q Consensus 317 ~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~-~g~~~~a- 391 (643)
.+.|++++|...|+++.+ .+...|..+..++.+.|++++|+..|+++++.. +-+...|..+..++.. .|..++|
T Consensus 177 ~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~ 255 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAV 255 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHH
T ss_pred HHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHHH
Confidence 888888888888888743 466788888888888999999999999988753 2346778888888877 5654666
Q ss_pred ----HHHHHHhHHhcCCCCChHHHHHHHHHHHhcC--CHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcC--------C-
Q 045672 392 ----WNHFKSMKKFYGIDPGREHYSCMIDLLGRAG--KLQEAVKLIHEMPYEP-DAVTWRALLGACKVHR--------N- 455 (643)
Q Consensus 392 ----~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~p-~~~~~~~ll~~~~~~g--------~- 455 (643)
+..|+...+. -+-+...|..+..+|.+.| ++++|.+.+.++...| +...+..+...+...| +
T Consensus 256 ~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~~~ 333 (382)
T 2h6f_A 256 LEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDI 333 (382)
T ss_dssp HHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHH
T ss_pred HHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchHHH
Confidence 4777777763 2335667888888888888 5888888888774445 4567778888877763 2
Q ss_pred HHHHHHHHHHH-HhcCCCCcchHHHHHHHHHc
Q 045672 456 TDLAICAAKKI-LNLDPQDPGTYILLSNIYAN 486 (643)
Q Consensus 456 ~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~ 486 (643)
.++|+.+++++ ++++|.....|..++..+..
T Consensus 334 ~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 334 LNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 58999999999 89999988888877776653
No 54
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.45 E-value=4.2e-12 Score=130.82 Aligned_cols=259 Identities=14% Similarity=0.056 Sum_probs=161.7
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHhcCChhHhHHHHHHHHhh----c---CCchhHHhH
Q 045672 243 SIIGGFAQNSDVDEALNLYKRMKRAGFAAD----QSTLTSVLRACTGLALLELGTQVHVHVLK----Y---DHDLILNNA 311 (643)
Q Consensus 243 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~a~~~~~~~~~a~~i~~~~~~----~---~~~~~~~~~ 311 (643)
.....+...|++++|+..|++..+.+. .+ ...+..+...+...|+++.|...+..+.. . +....++..
T Consensus 14 ~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 92 (406)
T 3sf4_A 14 LEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 92 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 334444444444444444444444311 11 12333344444444444444444444433 1 011234556
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCC-----C----hhhHHHHHHHHHhcCC--------------------HHHHHHHHHH
Q 045672 312 LLDMYCKCGSLEDAMSVFSRMIQK-----D----VISWSTMISGLAQNGY--------------------SQEALKLFES 362 (643)
Q Consensus 312 Li~~y~~~g~~~~A~~~~~~m~~~-----~----~~~~~~li~~~~~~g~--------------------~~~A~~l~~~ 362 (643)
+...|...|++++|...|++..+. + ..++..+...|...|+ +++|++.+++
T Consensus 93 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 172 (406)
T 3sf4_A 93 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEE 172 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 666677777777777766655321 1 3366777777777777 7888887776
Q ss_pred HHHC----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHh
Q 045672 363 MKVS----RIKPN-YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPG----REHYSCMIDLLGRAGKLQEAVKLIHE 433 (643)
Q Consensus 363 m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~ 433 (643)
.... +..|. ..++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|.+.+++
T Consensus 173 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 252 (406)
T 3sf4_A 173 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 252 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 5431 11122 345667777788888888888888877653211222 23677788888889999998888876
Q ss_pred C----CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------cchHHHHHHHHHccCChhHHHHHHHH
Q 045672 434 M----PYEPD----AVTWRALLGACKVHRNTDLAICAAKKILNLDPQD------PGTYILLSNIYANSQKWDEVAEVRKT 499 (643)
Q Consensus 434 m----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~ 499 (643)
. +..++ ..++..+...+...|++++|...++++++..+.. ..++..++.+|...|++++|.+.+++
T Consensus 253 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 332 (406)
T 3sf4_A 253 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 332 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5 11122 4467777788889999999999999988764332 45788899999999999999999988
Q ss_pred HHh
Q 045672 500 MRA 502 (643)
Q Consensus 500 m~~ 502 (643)
..+
T Consensus 333 al~ 335 (406)
T 3sf4_A 333 HLE 335 (406)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 55
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.45 E-value=1.7e-12 Score=134.24 Aligned_cols=259 Identities=11% Similarity=0.020 Sum_probs=168.9
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHhcCChhHhHHHHHHHHhhc-------CCchhHHhHH
Q 045672 244 IIGGFAQNSDVDEALNLYKRMKRAGFAADQ----STLTSVLRACTGLALLELGTQVHVHVLKY-------DHDLILNNAL 312 (643)
Q Consensus 244 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-------~~~~~~~~~L 312 (643)
+...+...|++++|+..|++..+.+.. +. ..+..+...+...|+++.|...+..+.+. +....++..+
T Consensus 54 ~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 132 (411)
T 4a1s_A 54 EGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNL 132 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHH
Confidence 344444555555555555555443211 11 23444444445555555555555554441 1223455666
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCC---------ChhhHHHHHHHHHhcCC-----------------HHHHHHHHHHHHHC
Q 045672 313 LDMYCKCGSLEDAMSVFSRMIQK---------DVISWSTMISGLAQNGY-----------------SQEALKLFESMKVS 366 (643)
Q Consensus 313 i~~y~~~g~~~~A~~~~~~m~~~---------~~~~~~~li~~~~~~g~-----------------~~~A~~l~~~m~~~ 366 (643)
...|...|++++|...|++..+. ...+|..+...|...|+ +++|++.+++..+.
T Consensus 133 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~ 212 (411)
T 4a1s_A 133 GNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL 212 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 77777777777777777665221 23467777777888888 88888887775431
Q ss_pred ----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHhC---
Q 045672 367 ----RIKPN-YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPG----REHYSCMIDLLGRAGKLQEAVKLIHEM--- 434 (643)
Q Consensus 367 ----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m--- 434 (643)
+-.|. ..++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|.+.+++.
T Consensus 213 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 292 (411)
T 4a1s_A 213 MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL 292 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 11121 346667777888889999998888887653211112 236778888899999999999888766
Q ss_pred -CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CcchHHHHHHHHHccCChhHHHHHHHHHHhC
Q 045672 435 -PYEPD----AVTWRALLGACKVHRNTDLAICAAKKILNLDPQ------DPGTYILLSNIYANSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 435 -~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 503 (643)
+...+ ..++..+...+...|++++|...++++++..+. ...++..++.+|...|++++|.+.+++..+.
T Consensus 293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 293 AVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 11111 456777888899999999999999999886443 2348889999999999999999999988753
No 56
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.44 E-value=4.2e-12 Score=126.81 Aligned_cols=257 Identities=14% Similarity=0.071 Sum_probs=162.9
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHhcCChhHhHHHHHHHHhh----c---CCchhHHhHHHH
Q 045672 246 GGFAQNSDVDEALNLYKRMKRAGFAAD----QSTLTSVLRACTGLALLELGTQVHVHVLK----Y---DHDLILNNALLD 314 (643)
Q Consensus 246 ~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~a~~~~~~~~~a~~i~~~~~~----~---~~~~~~~~~Li~ 314 (643)
..+...|++++|+..|++..+.... + ...+..+...+...|+++.|...+..+.+ . +....++..+..
T Consensus 13 ~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 91 (338)
T 3ro2_A 13 ERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGN 91 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence 3344444444444444444443111 1 12333344444444444444444444433 0 011334556667
Q ss_pred HHHhcCCHHHHHHHHhhcCC-----CC----hhhHHHHHHHHHhcCC--------------------HHHHHHHHHHHHH
Q 045672 315 MYCKCGSLEDAMSVFSRMIQ-----KD----VISWSTMISGLAQNGY--------------------SQEALKLFESMKV 365 (643)
Q Consensus 315 ~y~~~g~~~~A~~~~~~m~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~l~~~m~~ 365 (643)
.|...|++++|...|++..+ .+ ..++..+...|...|+ +++|++.+++...
T Consensus 92 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~ 171 (338)
T 3ro2_A 92 TLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLS 171 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 77777777777777766522 11 2366677777777777 7888887776543
Q ss_pred C----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHhC--
Q 045672 366 S----RIKPN-YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPG----REHYSCMIDLLGRAGKLQEAVKLIHEM-- 434 (643)
Q Consensus 366 ~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-- 434 (643)
. +..|. ..++..+...+...|++++|...++...+...-.++ ...+..+...|.+.|++++|.+.+++.
T Consensus 172 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 251 (338)
T 3ro2_A 172 LVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLL 251 (338)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 11121 345666777788888898888888877653111112 236778888899999999999888765
Q ss_pred --CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------cchHHHHHHHHHccCChhHHHHHHHHHHh
Q 045672 435 --PYEPD----AVTWRALLGACKVHRNTDLAICAAKKILNLDPQD------PGTYILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 435 --~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
+..++ ..++..+...+...|++++|...++++++..|.. ..++..++.+|...|++++|.+.+++..+
T Consensus 252 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 252 LARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 11122 4467777788999999999999999998765432 34788999999999999999999998876
Q ss_pred C
Q 045672 503 R 503 (643)
Q Consensus 503 ~ 503 (643)
.
T Consensus 332 ~ 332 (338)
T 3ro2_A 332 I 332 (338)
T ss_dssp C
T ss_pred H
Confidence 4
No 57
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.43 E-value=9.7e-12 Score=120.48 Aligned_cols=217 Identities=8% Similarity=-0.044 Sum_probs=160.2
Q ss_pred cCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCC--CCh----hhHHHHHHHHHhcCCHHHHH
Q 045672 285 GLALLELGTQVHVHVLK-YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ--KDV----ISWSTMISGLAQNGYSQEAL 357 (643)
Q Consensus 285 ~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~--~~~----~~~~~li~~~~~~g~~~~A~ 357 (643)
..|+++.|...+..+.+ .+.+...+..+...|...|++++|...|++..+ ++. .+|..+...|...|++++|+
T Consensus 15 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~ 94 (272)
T 3u4t_A 15 KNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAI 94 (272)
T ss_dssp TTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHH
Confidence 33333333333333333 222334556677778888888888888887744 222 24788889999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CC
Q 045672 358 KLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PY 436 (643)
Q Consensus 358 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~ 436 (643)
+.|++..+.. +.+..++..+...+...|++++|...|++..+. .+.+...+..+...+...+++++|.+.|+++ ..
T Consensus 95 ~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 171 (272)
T 3u4t_A 95 QQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL 171 (272)
T ss_dssp HHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999988753 334678888899999999999999999988762 3335667777773444556999999999887 33
Q ss_pred CC-CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcC---CCC-----cchHHHHHHHHHccCChhHHHHHHHHHHhCC
Q 045672 437 EP-DAVTWRALLGACKVHRN---TDLAICAAKKILNLD---PQD-----PGTYILLSNIYANSQKWDEVAEVRKTMRARG 504 (643)
Q Consensus 437 ~p-~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 504 (643)
.| +...+..+...+...|+ +++|...++++++.. |+. ..+|..++.+|...|++++|.+.+++..+..
T Consensus 172 ~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 251 (272)
T 3u4t_A 172 KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALD 251 (272)
T ss_dssp STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 44 46677778888888888 888999999998865 432 2578889999999999999999999998743
No 58
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.43 E-value=4.3e-11 Score=116.15 Aligned_cols=226 Identities=11% Similarity=-0.010 Sum_probs=176.8
Q ss_pred chhHHHHHHHHHHHcCCHHHHHHHHhhCCCC-CcchHHHHHHHHHh----CCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 045672 206 DVFVRSALIDIYAKLGELRNAECVFNEMPTR-DLVVWNSIIGGFAQ----NSDVDEALNLYKRMKRAGFAADQSTLTSVL 280 (643)
Q Consensus 206 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 280 (643)
+...+..+...|...|++++|...|++..++ +..++..+...|.. .+++++|+..|++..+.+ +...+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~---- 77 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC---- 77 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH----
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH----
Confidence 5677888999999999999999999887665 56788889999999 999999999999988765 34444
Q ss_pred HHHhcCChhHhHHHHHHHHhhcCCchhHHhHHHHHHHh----cCCHHHHHHHHhhcCC-CChhhHHHHHHHHHh----cC
Q 045672 281 RACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCK----CGSLEDAMSVFSRMIQ-KDVISWSTMISGLAQ----NG 351 (643)
Q Consensus 281 ~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~Li~~y~~----~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~----~g 351 (643)
..+..+|.. .+++++|...|++..+ .+..++..+...|.. .|
T Consensus 78 -----------------------------~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~ 128 (273)
T 1ouv_A 78 -----------------------------HLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTR 128 (273)
T ss_dssp -----------------------------HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCC
T ss_pred -----------------------------HHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCccc
Confidence 344455555 6777777777766543 356677778888888 88
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHh----cCC
Q 045672 352 YSQEALKLFESMKVSRIKPNYITIVGVLFACSH----AGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGR----AGK 423 (643)
Q Consensus 352 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~ 423 (643)
++++|++.|++..+.+ +...+..+...+.. .+++++|...|+...+. .+...+..+..+|.+ .++
T Consensus 129 ~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~ 201 (273)
T 1ouv_A 129 DFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKN 201 (273)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCC
T ss_pred CHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCcc
Confidence 8899999998888765 45566667777776 88999999999888773 345677788888888 899
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCc
Q 045672 424 LQEAVKLIHEMPYEPDAVTWRALLGACKV----HRNTDLAICAAKKILNLDPQDP 474 (643)
Q Consensus 424 ~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~ 474 (643)
+++|.+.+++.-...+...+..+...+.. .+++++|+..++++.+.+|+++
T Consensus 202 ~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a 256 (273)
T 1ouv_A 202 FKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGA 256 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHH
Confidence 99999998876222346677777888888 8999999999999999988653
No 59
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.42 E-value=1.8e-11 Score=111.02 Aligned_cols=164 Identities=15% Similarity=0.120 Sum_probs=133.5
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHH
Q 045672 336 DVISWSTMISGLAQNGYSQEALKLFESMKVSRIKP-NYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCM 414 (643)
Q Consensus 336 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 414 (643)
++..|..+...|.+.|++++|++.|++..+. .| +..++..+..++.+.|++++|...+...... .+.+...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHH
Confidence 4567778888888888888888888888774 34 4667777888888888888888888888763 33456677777
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhH
Q 045672 415 IDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDE 492 (643)
Q Consensus 415 i~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 492 (643)
...+...+++++|.+.+.+. ...| +...|..+...+...|++++|+..++++++.+|.++.++..++.+|.+.|++++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 78888888888888888776 2233 566788888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhC
Q 045672 493 VAEVRKTMRAR 503 (643)
Q Consensus 493 a~~~~~~m~~~ 503 (643)
|.+.+++..+.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 99999988764
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.41 E-value=3.4e-12 Score=131.53 Aligned_cols=286 Identities=13% Similarity=0.031 Sum_probs=217.2
Q ss_pred chhHHHHHHHHHHHcCCHHHHHHHHhhCCC--C-C----cchHHHHHHHHHhCCChhHHHHHHHHHHHc----CCCC-CH
Q 045672 206 DVFVRSALIDIYAKLGELRNAECVFNEMPT--R-D----LVVWNSIIGGFAQNSDVDEALNLYKRMKRA----GFAA-DQ 273 (643)
Q Consensus 206 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~ 273 (643)
....+..+...+...|++++|...|++..+ + + ..+|..+...|...|++++|+..|++.... +-.| ..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 344555677888999999999999987653 2 3 246888889999999999999999887542 2222 24
Q ss_pred HHHHHHHHHHhcCChhHhHHHHHHHHhh-cC--Cc----hhHHhHHHHHHHhcCC--------------------HHHHH
Q 045672 274 STLTSVLRACTGLALLELGTQVHVHVLK-YD--HD----LILNNALLDMYCKCGS--------------------LEDAM 326 (643)
Q Consensus 274 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~--~~----~~~~~~Li~~y~~~g~--------------------~~~A~ 326 (643)
.++..+...+...|+++.|...+..+.+ .+ .+ ..++..+...|...|+ +++|.
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 4677777888899999999999999887 11 11 4477888999999999 99999
Q ss_pred HHHhhcCC-----C----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCCHHHHH
Q 045672 327 SVFSRMIQ-----K----DVISWSTMISGLAQNGYSQEALKLFESMKVSRI-KPN----YITIVGVLFACSHAGFVEDGW 392 (643)
Q Consensus 327 ~~~~~m~~-----~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~ 392 (643)
..|++... . ...+|..+...|...|++++|+..|++..+... .++ ..++..+...+...|++++|.
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 88877632 1 234788888999999999999999998765210 122 336778888899999999999
Q ss_pred HHHHHhHHhcCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHHcCCHHHHH
Q 045672 393 NHFKSMKKFYGIDPG----REHYSCMIDLLGRAGKLQEAVKLIHEM----PYEPD----AVTWRALLGACKVHRNTDLAI 460 (643)
Q Consensus 393 ~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ll~~~~~~g~~~~a~ 460 (643)
..++...+...-.++ ...+..+...|.+.|++++|.+.+++. +..++ ..++..+...+...|++++|.
T Consensus 248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 327 (406)
T 3sf4_A 248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM 327 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999988753211112 457888999999999999999998876 11122 446778888899999999999
Q ss_pred HHHHHHHhcCC------CCcchHHHHHHHHHccCChh
Q 045672 461 CAAKKILNLDP------QDPGTYILLSNIYANSQKWD 491 (643)
Q Consensus 461 ~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~ 491 (643)
..+++++++.+ ....++..++.+|...|+..
T Consensus 328 ~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 328 HFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 99999987632 23557788888888888764
No 61
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.40 E-value=3.4e-12 Score=134.47 Aligned_cols=206 Identities=12% Similarity=0.013 Sum_probs=169.1
Q ss_pred HhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCCH-HHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045672 290 ELGTQVHVHVLK-YDHDLILNNALLDMYCKCGSL-EDAMSVFSRMIQ---KDVISWSTMISGLAQNGYSQEALKLFESMK 364 (643)
Q Consensus 290 ~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~~-~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 364 (643)
+.+.+.+....+ .+.+...+..+...|...|++ ++|.+.|++..+ .+...|..+...|.+.|++++|++.|++..
T Consensus 85 ~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 164 (474)
T 4abn_A 85 EKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGAL 164 (474)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334444444444 334556677777888888888 888888887632 356788889999999999999999999988
Q ss_pred HCCCCCCHHHHHHHHHHHhcc---------CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhc--------CCHHHH
Q 045672 365 VSRIKPNYITIVGVLFACSHA---------GFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRA--------GKLQEA 427 (643)
Q Consensus 365 ~~g~~p~~~t~~~ll~a~~~~---------g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~--------g~~~~A 427 (643)
+. .|+...+..+...+... |++++|...|++..+. .+.+...|..+..+|... |++++|
T Consensus 165 ~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A 240 (474)
T 4abn_A 165 TH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQA 240 (474)
T ss_dssp TT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred hh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 74 57778888888889998 9999999999999873 234577888999999988 999999
Q ss_pred HHHHHhC-CCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHH
Q 045672 428 VKLIHEM-PYEP----DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKT 499 (643)
Q Consensus 428 ~~~~~~m-~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 499 (643)
.+.|++. ...| +...|..+...+...|++++|+..++++++++|+++.++..++.++...|++++|.+.+.+
T Consensus 241 ~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 241 LSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999887 3345 6778999999999999999999999999999999999999999999999999999876543
No 62
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.39 E-value=1.6e-09 Score=117.26 Aligned_cols=425 Identities=8% Similarity=0.016 Sum_probs=276.0
Q ss_pred CcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCC---hhHHHH
Q 045672 54 DLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL---LEEAQV 130 (643)
Q Consensus 54 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~ 130 (643)
...+.+..|++.+... +-|..+|..++..+.+.+.++.++.+|+.++.. ++.....|..-+..-.+.|. .+.+..
T Consensus 47 ~~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp CCSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 4556666677776655 568999999999999999999999999999987 45677788888888888888 999999
Q ss_pred HHccCCC-----CCcchHHHHHHHHHhCCCh----hH----HHHHHHHHHH-CCC-CCCh-hhHHHHHHHHhchhhHHHH
Q 045672 131 LFDQMPE-----RNVVSWTTMISAYCDAKMN----DK----ALELLIFMLR-EGV-RPNM-FTYSAVLRACDSLIILRQL 194 (643)
Q Consensus 131 ~f~~m~~-----~~~~~~~~li~~~~~~g~~----~~----A~~~~~~m~~-~g~-~p~~-~t~~~ll~a~~~~~~~~~~ 194 (643)
+|++... +++..|...+....+.++. ++ ..++|++.+. .|. .|+. ..|...+.-....
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~------ 198 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHW------ 198 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTC------
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhc------
Confidence 9997764 6677788777665554443 22 3466666543 344 4432 2333322211100
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC-C--Cc-chHH---HHHHHH----------HhCCChhHH
Q 045672 195 HCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPT-R--DL-VVWN---SIIGGF----------AQNSDVDEA 257 (643)
Q Consensus 195 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-~--~~-~~~~---~li~~~----------~~~g~~~~A 257 (643)
.+. .-+-..++++.+.++|++... | +. .+|. ...... -...+++.|
T Consensus 199 ---------~~~--------~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~A 261 (679)
T 4e6h_A 199 ---------KPV--------NKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNA 261 (679)
T ss_dssp ---------CCC--------SHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHH
T ss_pred ---------ccc--------CcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHH
Confidence 000 000112234445555544432 1 00 1111 111110 001133445
Q ss_pred HHHHHHHHH--cCCC---------------C-----CH---HHHHHHHHHHhcCC-------hhHhHHHHHHHHhh-cCC
Q 045672 258 LNLYKRMKR--AGFA---------------A-----DQ---STLTSVLRACTGLA-------LLELGTQVHVHVLK-YDH 304 (643)
Q Consensus 258 ~~~~~~m~~--~g~~---------------p-----~~---~t~~~ll~a~~~~~-------~~~~a~~i~~~~~~-~~~ 304 (643)
...+.++.. .++. | +. ..|...+.---..+ ..+....++++++. .+.
T Consensus 262 r~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~ 341 (679)
T 4e6h_A 262 RSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCF 341 (679)
T ss_dssp HHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCC
Confidence 555544332 1111 1 00 12333332222211 12345667888888 777
Q ss_pred chhHHhHHHHHHHhcCCHHHHH-HHHhhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC---------CCCC
Q 045672 305 DLILNNALLDMYCKCGSLEDAM-SVFSRMIQ---KDVISWSTMISGLAQNGYSQEALKLFESMKVSR---------IKPN 371 (643)
Q Consensus 305 ~~~~~~~Li~~y~~~g~~~~A~-~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---------~~p~ 371 (643)
...+|-..+..+...|+.++|. .+|++... .+...|-..+...-+.|++++|.++|+++.... -.|+
T Consensus 342 ~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~ 421 (679)
T 4e6h_A 342 APEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPT 421 (679)
T ss_dssp CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCc
Confidence 8889999999999999999996 99988743 355668888888899999999999999987631 0142
Q ss_pred ------------HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcC-CHHHHHHHHHhC--CC
Q 045672 372 ------------YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAG-KLQEAVKLIHEM--PY 436 (643)
Q Consensus 372 ------------~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m--~~ 436 (643)
...|...+....+.|+.+.|+.+|..+.+.. ..+....|...+.+-.+.| +.+.|.++|+.. ..
T Consensus 422 ~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~-~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~ 500 (679)
T 4e6h_A 422 NESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK-KLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF 500 (679)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG-GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH
T ss_pred chhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC
Confidence 2357777777778899999999999998731 1223445554444444554 489999999877 23
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---CcchHHHHHHHHHccCChhHHHHHHHHHHhCC
Q 045672 437 EPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQ---DPGTYILLSNIYANSQKWDEVAEVRKTMRARG 504 (643)
Q Consensus 437 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 504 (643)
..+...|...+......|+.+.|..+|++++...|+ ....|...+..-.+.|+.+.+.++.+++.+.-
T Consensus 501 p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 501 ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 346677888888888899999999999999998873 44577788888889999999999999998754
No 63
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.38 E-value=1.1e-11 Score=120.23 Aligned_cols=216 Identities=14% Similarity=0.036 Sum_probs=177.8
Q ss_pred hcCChhHhHHHHHHHHhhc-----CCchhHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHH
Q 045672 284 TGLALLELGTQVHVHVLKY-----DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ---KDVISWSTMISGLAQNGYSQE 355 (643)
Q Consensus 284 ~~~~~~~~a~~i~~~~~~~-----~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~ 355 (643)
...|+++.|...+..+.+. +.+..++..+...|...|++++|...|+++.+ .+...|..+...|...|++++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHH
Confidence 4568899999999999883 23567888999999999999999999998743 467899999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-
Q 045672 356 ALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM- 434 (643)
Q Consensus 356 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m- 434 (643)
|++.|+++.+.. +.+..++..+...+...|++++|...|+.+.+. .|+..........+.+.|++++|...+++.
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999998853 335778889999999999999999999999874 455555555556667889999999999765
Q ss_pred C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----CcchHHHHHHHHHccCChhHHHHHHHHHHhCC
Q 045672 435 P-YEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQ----DPGTYILLSNIYANSQKWDEVAEVRKTMRARG 504 (643)
Q Consensus 435 ~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 504 (643)
. ..++...|. ++..+...++.++|...++++++..|. ++..+..++.+|...|++++|.+.+++..+..
T Consensus 172 ~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 172 EKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp HHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred hcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 2 223434443 666778888999999999999887663 36789999999999999999999999998754
No 64
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.38 E-value=1.5e-11 Score=124.72 Aligned_cols=226 Identities=11% Similarity=0.094 Sum_probs=190.9
Q ss_pred HHHHHHHHHHHhcCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCC-HHHHHHHHhhcCC---CChhhHHHHHHHH
Q 045672 273 QSTLTSVLRACTGLALLELGTQVHVHVLK-YDHDLILNNALLDMYCKCGS-LEDAMSVFSRMIQ---KDVISWSTMISGL 347 (643)
Q Consensus 273 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~-~~~A~~~~~~m~~---~~~~~~~~li~~~ 347 (643)
...+..+..++...|+++.|...+..+++ .+.+..+|+.+...|.+.|+ +++|...|++... .+...|+.+..++
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 34566677778889999999999999999 66678899999999999997 9999999998853 4677999999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHh-cCCHHH
Q 045672 348 AQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGR-AGKLQE 426 (643)
Q Consensus 348 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~ 426 (643)
...|++++|+..|+++++.. +-+...|..+..++...|++++|+..|+++.+. -+-+...|+.+..+|.+ .|..++
T Consensus 177 ~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcchH
Confidence 99999999999999999853 335778889999999999999999999999984 23467889999999999 666577
Q ss_pred H-----HHHHHhC-CCCC-CHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccC---------
Q 045672 427 A-----VKLIHEM-PYEP-DAVTWRALLGACKVHR--NTDLAICAAKKILNLDPQDPGTYILLSNIYANSQ--------- 488 (643)
Q Consensus 427 A-----~~~~~~m-~~~p-~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g--------- 488 (643)
| ++.|++. ...| +...|..+...+...| ++++|+..++++ +.+|+++.++..++.+|.+.|
T Consensus 254 A~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~ 332 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKED 332 (382)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHH
Confidence 7 4667665 3445 5678988888888888 689999999998 889999999999999999875
Q ss_pred ChhHHHHHHHHH-Hh
Q 045672 489 KWDEVAEVRKTM-RA 502 (643)
Q Consensus 489 ~~~~a~~~~~~m-~~ 502 (643)
..++|.++++++ .+
T Consensus 333 ~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 333 ILNKALELCEILAKE 347 (382)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 358999999998 54
No 65
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.34 E-value=1.8e-11 Score=126.53 Aligned_cols=264 Identities=12% Similarity=0.033 Sum_probs=202.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhCCC--C-Cc----chHHHHHHHHHhCCChhHHHHHHHHHHHc----CCCC-CHHHH
Q 045672 209 VRSALIDIYAKLGELRNAECVFNEMPT--R-DL----VVWNSIIGGFAQNSDVDEALNLYKRMKRA----GFAA-DQSTL 276 (643)
Q Consensus 209 ~~~~li~~y~~~g~~~~A~~~f~~~~~--~-~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~ 276 (643)
.+..+...+...|++++|...|++..+ + +. ..|..+...|...|++++|+..|++..+. +-.| ....+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 344567788999999999999988754 2 32 46888899999999999999999987653 1122 34567
Q ss_pred HHHHHHHhcCChhHhHHHHHHHHhhc-------CCchhHHhHHHHHHHhcCC-----------------HHHHHHHHhhc
Q 045672 277 TSVLRACTGLALLELGTQVHVHVLKY-------DHDLILNNALLDMYCKCGS-----------------LEDAMSVFSRM 332 (643)
Q Consensus 277 ~~ll~a~~~~~~~~~a~~i~~~~~~~-------~~~~~~~~~Li~~y~~~g~-----------------~~~A~~~~~~m 332 (643)
..+...+...|+++.|...+..+.+. +....++..+...|...|+ +++|...|++.
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 209 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN 209 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 77888889999999999999998871 1224577888999999999 99999888776
Q ss_pred CC-------C--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHHh
Q 045672 333 IQ-------K--DVISWSTMISGLAQNGYSQEALKLFESMKVSRI-KPN----YITIVGVLFACSHAGFVEDGWNHFKSM 398 (643)
Q Consensus 333 ~~-------~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~ 398 (643)
.+ + ....|..+...|...|++++|+..|++..+... .++ ..++..+...+...|++++|...++..
T Consensus 210 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (411)
T 4a1s_A 210 LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT 289 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 32 1 234788888999999999999999998865311 112 236778888999999999999999988
Q ss_pred HHhcCCCC----ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CC---CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045672 399 KKFYGIDP----GREHYSCMIDLLGRAGKLQEAVKLIHEM-PY---EPD----AVTWRALLGACKVHRNTDLAICAAKKI 466 (643)
Q Consensus 399 ~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~---~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~ 466 (643)
.+...-.. ....+..+...|.+.|++++|.+.+++. .. .++ ..++..+...+...|++++|...++++
T Consensus 290 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 369 (411)
T 4a1s_A 290 LALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQH 369 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 76321111 1457888999999999999999999876 11 112 346777888899999999999999999
Q ss_pred HhcCCC
Q 045672 467 LNLDPQ 472 (643)
Q Consensus 467 ~~~~p~ 472 (643)
+++.+.
T Consensus 370 l~~~~~ 375 (411)
T 4a1s_A 370 LQLAXX 375 (411)
T ss_dssp HHHCCH
T ss_pred HHHHhh
Confidence 987663
No 66
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.33 E-value=2.8e-11 Score=120.80 Aligned_cols=262 Identities=13% Similarity=0.046 Sum_probs=197.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHhhCCC--C-C----cchHHHHHHHHHhCCChhHHHHHHHHHHHc----CCCC-CHHHHHH
Q 045672 211 SALIDIYAKLGELRNAECVFNEMPT--R-D----LVVWNSIIGGFAQNSDVDEALNLYKRMKRA----GFAA-DQSTLTS 278 (643)
Q Consensus 211 ~~li~~y~~~g~~~~A~~~f~~~~~--~-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ 278 (643)
......+...|++++|...|++..+ + + ...|..+...|...|++++|++.+++.... +..| ...++..
T Consensus 9 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (338)
T 3ro2_A 9 ALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 88 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 3456678899999999999988643 2 3 356788899999999999999999887542 2122 2456777
Q ss_pred HHHHHhcCChhHhHHHHHHHHhh-c--CCc----hhHHhHHHHHHHhcCC--------------------HHHHHHHHhh
Q 045672 279 VLRACTGLALLELGTQVHVHVLK-Y--DHD----LILNNALLDMYCKCGS--------------------LEDAMSVFSR 331 (643)
Q Consensus 279 ll~a~~~~~~~~~a~~i~~~~~~-~--~~~----~~~~~~Li~~y~~~g~--------------------~~~A~~~~~~ 331 (643)
+...+...|+++.|...+..+.+ . ..+ ..++..+...|...|+ +++|...+++
T Consensus 89 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 168 (338)
T 3ro2_A 89 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEE 168 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 78888899999999999999887 1 111 3477888899999999 9999988877
Q ss_pred cCC-----C----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHH
Q 045672 332 MIQ-----K----DVISWSTMISGLAQNGYSQEALKLFESMKVSRI-KPN----YITIVGVLFACSHAGFVEDGWNHFKS 397 (643)
Q Consensus 332 m~~-----~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~ 397 (643)
... . ....+..+...+...|++++|++.+++..+... .++ ..++..+...+...|++++|...++.
T Consensus 169 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 248 (338)
T 3ro2_A 169 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 248 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 632 1 234678888899999999999999998764210 112 33677788889999999999999998
Q ss_pred hHHhcCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 045672 398 MKKFYGIDPG----REHYSCMIDLLGRAGKLQEAVKLIHEM----PYEPD----AVTWRALLGACKVHRNTDLAICAAKK 465 (643)
Q Consensus 398 ~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~ 465 (643)
..+...-.++ ...+..+...|...|++++|.+.+++. +..++ ..++..+...+...|++++|...+++
T Consensus 249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (338)
T 3ro2_A 249 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 328 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 8753211122 457788899999999999999998876 11122 34677788889999999999999999
Q ss_pred HHhcCCC
Q 045672 466 ILNLDPQ 472 (643)
Q Consensus 466 ~~~~~p~ 472 (643)
++++.+.
T Consensus 329 a~~~~~~ 335 (338)
T 3ro2_A 329 HLEISRE 335 (338)
T ss_dssp HHHC---
T ss_pred HHHHHHh
Confidence 9987664
No 67
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.32 E-value=7.4e-10 Score=109.54 Aligned_cols=216 Identities=10% Similarity=0.050 Sum_probs=145.2
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHh-------cCChh-------HhHHHHHHHHhh-cCC-chhHHhHHHHHHHh
Q 045672 255 DEALNLYKRMKRAGFAADQSTLTSVLRACT-------GLALL-------ELGTQVHVHVLK-YDH-DLILNNALLDMYCK 318 (643)
Q Consensus 255 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~-------~~~~~-------~~a~~i~~~~~~-~~~-~~~~~~~Li~~y~~ 318 (643)
++|...|++..... +-+...|......+. ..|+. ++|..+++++++ +.| +..+|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56777777776642 234455555555443 24554 777777777777 444 34577778888888
Q ss_pred cCCHHHHHHHHhhcCC--C-Chh-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-hccCCHHHHHH
Q 045672 319 CGSLEDAMSVFSRMIQ--K-DVI-SWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFAC-SHAGFVEDGWN 393 (643)
Q Consensus 319 ~g~~~~A~~~~~~m~~--~-~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~-~~~g~~~~a~~ 393 (643)
.|++++|..+|++..+ | +.. .|..++..+.+.|++++|..+|++..+.. +++...|....... ...|+.++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888887743 2 233 67777777888888888888888887643 23334444333222 23688888888
Q ss_pred HHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-C---CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 045672 394 HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-P---YEP--DAVTWRALLGACKVHRNTDLAICAAKKIL 467 (643)
Q Consensus 394 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~---~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 467 (643)
+|+...+. .+.+...|..++..+.+.|++++|..+|++. . ..| ....|..++......|+.+.|..++++++
T Consensus 191 ~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88887764 2335667777788888888888888888776 1 244 35577777777777888888888888888
Q ss_pred hcCCCCc
Q 045672 468 NLDPQDP 474 (643)
Q Consensus 468 ~~~p~~~ 474 (643)
+..|+++
T Consensus 269 ~~~p~~~ 275 (308)
T 2ond_A 269 TAFREEY 275 (308)
T ss_dssp HHTTTTT
T ss_pred HHccccc
Confidence 8887654
No 68
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.30 E-value=1.1e-10 Score=105.60 Aligned_cols=168 Identities=11% Similarity=0.070 Sum_probs=142.0
Q ss_pred CchhHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 045672 304 HDLILNNALLDMYCKCGSLEDAMSVFSRMIQ---KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLF 380 (643)
Q Consensus 304 ~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 380 (643)
.+..+|..|...|.+.|++++|...|++..+ .+..+|..+...|.+.|++++|+..+++..... +-+...+..+..
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 3566788999999999999999999998743 367789999999999999999999999988753 334566777778
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHH
Q 045672 381 ACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDL 458 (643)
Q Consensus 381 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~ 458 (643)
.+...++++.+...+....+. .+.+...+..+...|.+.|++++|++.|++. ...| +..+|..+...+...|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 888999999999999998873 3446778889999999999999999999887 3344 56789999999999999999
Q ss_pred HHHHHHHHHhcCCCCc
Q 045672 459 AICAAKKILNLDPQDP 474 (643)
Q Consensus 459 a~~~~~~~~~~~p~~~ 474 (643)
|+..++++++++|+++
T Consensus 160 A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 160 AVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHhCCccCH
Confidence 9999999999999754
No 69
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.29 E-value=6.1e-11 Score=129.99 Aligned_cols=162 Identities=20% Similarity=0.236 Sum_probs=138.9
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHH
Q 045672 336 DVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPN-YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDP-GREHYSC 413 (643)
Q Consensus 336 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~ 413 (643)
+..+|+.+...|.+.|++++|++.|++.++. .|+ ..++..+..++.+.|++++|+..|++..+. .| +...|..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~n 82 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHH
Confidence 3557888888888999999999999888874 555 677888888889999999999999888873 34 4678888
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChh
Q 045672 414 MIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWD 491 (643)
Q Consensus 414 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 491 (643)
+..+|.+.|++++|++.|++. .+.| +...|..+...+...|++++|+..++++++++|+++.++..|+.+|...|+|+
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 999999999999999998877 4445 46689999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 045672 492 EVAEVRKTMRA 502 (643)
Q Consensus 492 ~a~~~~~~m~~ 502 (643)
+|.+.+++..+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998887754
No 70
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.28 E-value=2.7e-10 Score=112.75 Aligned_cols=211 Identities=10% Similarity=0.025 Sum_probs=172.7
Q ss_pred HhHHHHHHHHhh-cCCchhHHhHHHHHHH-------hcCCH-------HHHHHHHhhcCC---C-ChhhHHHHHHHHHhc
Q 045672 290 ELGTQVHVHVLK-YDHDLILNNALLDMYC-------KCGSL-------EDAMSVFSRMIQ---K-DVISWSTMISGLAQN 350 (643)
Q Consensus 290 ~~a~~i~~~~~~-~~~~~~~~~~Li~~y~-------~~g~~-------~~A~~~~~~m~~---~-~~~~~~~li~~~~~~ 350 (643)
+.|..+++++++ .+.+..+|..++..+. +.|++ ++|..+|++... | +...|..++..+.+.
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 677788899988 7778888988888876 35885 899999998754 3 556899999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCH-H-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHH-hcCCHHHH
Q 045672 351 GYSQEALKLFESMKVSRIKPNY-I-TIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLG-RAGKLQEA 427 (643)
Q Consensus 351 g~~~~A~~l~~~m~~~g~~p~~-~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~-~~g~~~~A 427 (643)
|++++|.++|++..+ +.|+. . .|..+...+.+.|++++|..+|++..+. .+++...|...+.... ..|++++|
T Consensus 113 ~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 113 MKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred CCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999998 45653 3 7888888999999999999999999873 2344555554444432 36999999
Q ss_pred HHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCC-CcchHHHHHHHHHccCChhHHHHHHHHHH
Q 045672 428 VKLIHEM-PYE-PDAVTWRALLGACKVHRNTDLAICAAKKILNL---DPQ-DPGTYILLSNIYANSQKWDEVAEVRKTMR 501 (643)
Q Consensus 428 ~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 501 (643)
.++|++. ... .+...|..++..+...|++++|..+|+++++. .|+ ....|..++..+.+.|+.++|..+++++.
T Consensus 189 ~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 189 FKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999887 222 36778999999999999999999999999995 453 56688899999999999999999999998
Q ss_pred hCC
Q 045672 502 ARG 504 (643)
Q Consensus 502 ~~g 504 (643)
+..
T Consensus 269 ~~~ 271 (308)
T 2ond_A 269 TAF 271 (308)
T ss_dssp HHT
T ss_pred HHc
Confidence 754
No 71
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.27 E-value=1.8e-10 Score=103.83 Aligned_cols=161 Identities=16% Similarity=0.027 Sum_probs=103.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHH
Q 045672 340 WSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLG 419 (643)
Q Consensus 340 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 419 (643)
|..+...+...|++++|+..|+++.... +.+...+..+...+...|++++|...++.+.+. .+.+...+..+...|.
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHH
Confidence 4444455555555555555555554321 223444555555555566666666666655542 2234455666666666
Q ss_pred hcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHH
Q 045672 420 RAGKLQEAVKLIHEM-P-YEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVR 497 (643)
Q Consensus 420 ~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 497 (643)
..|++++|.+.++++ . .+.+...|..+...+...|++++|...++++++..|.++.++..++.+|...|++++|.+.+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 666666666666655 1 12355667777777888888888888888888888888888888888888888888888888
Q ss_pred HHHHhC
Q 045672 498 KTMRAR 503 (643)
Q Consensus 498 ~~m~~~ 503 (643)
++..+.
T Consensus 168 ~~~~~~ 173 (186)
T 3as5_A 168 KKANEL 173 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 877653
No 72
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.27 E-value=1.7e-10 Score=118.16 Aligned_cols=283 Identities=10% Similarity=0.014 Sum_probs=192.6
Q ss_pred HHHcCCHHHHHHHHhhCCC--------CCcchHHHHHHH--HHhCCChhHHH-----------HHHHHHHHcCCCCCHHH
Q 045672 217 YAKLGELRNAECVFNEMPT--------RDLVVWNSIIGG--FAQNSDVDEAL-----------NLYKRMKRAGFAADQST 275 (643)
Q Consensus 217 y~~~g~~~~A~~~f~~~~~--------~~~~~~~~li~~--~~~~g~~~~A~-----------~~~~~m~~~g~~p~~~t 275 (643)
+.+.+++++|..+++++.+ +++..|-.++.. ....+..+.+. +.++.+.... .+...
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~~ 99 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLTG 99 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCchh
Confidence 4567888888888776532 233333333322 11122333333 5565554421 11111
Q ss_pred HH------HHHHHHhcCChhHhHHHHHHHHhhc----CC---chhHHhHHHHHHHhcCCHHHHHHHHhhcCC-----C--
Q 045672 276 LT------SVLRACTGLALLELGTQVHVHVLKY----DH---DLILNNALLDMYCKCGSLEDAMSVFSRMIQ-----K-- 335 (643)
Q Consensus 276 ~~------~ll~a~~~~~~~~~a~~i~~~~~~~----~~---~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~-----~-- 335 (643)
+. .....+...|+++.|...+..+.+. +. ...++..+...|...|++++|...+++..+ +
T Consensus 100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 179 (383)
T 3ulq_A 100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY 179 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence 11 2445567789999999999988871 22 236778888999999999999888877632 1
Q ss_pred ---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHHhHHhc---CC
Q 045672 336 ---DVISWSTMISGLAQNGYSQEALKLFESMKVSRI-KPN----YITIVGVLFACSHAGFVEDGWNHFKSMKKFY---GI 404 (643)
Q Consensus 336 ---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~ 404 (643)
...+++.+...|...|++++|++.|++..+... .++ ..++..+...+...|++++|.+.+++..+-. +.
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 259 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI 259 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence 134788888999999999999999988764211 122 2467788888999999999999998887621 23
Q ss_pred -CCChHHHHHHHHHHHhcCCHHHHHHHHHhC-C---C--CCC-HHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCC
Q 045672 405 -DPGREHYSCMIDLLGRAGKLQEAVKLIHEM-P---Y--EPD-AVTWRALLGACKVHRN---TDLAICAAKKILNLDPQD 473 (643)
Q Consensus 405 -~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~---~--~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~ 473 (643)
+....++..+...|.+.|++++|.+.+++. . . .|. ...+..+...+...|+ .++|+..+++. ...|..
T Consensus 260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~ 338 (383)
T 3ulq_A 260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADL 338 (383)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHH
T ss_pred chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHH
Confidence 223567888999999999999999998876 1 1 122 2234556666778888 77777777766 233445
Q ss_pred cchHHHHHHHHHccCChhHHHHHHHHHHh
Q 045672 474 PGTYILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 474 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
...+..++.+|...|++++|.+.+++..+
T Consensus 339 ~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 339 EDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 56788999999999999999999998864
No 73
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.26 E-value=4.2e-09 Score=107.16 Aligned_cols=223 Identities=11% Similarity=0.033 Sum_probs=147.6
Q ss_pred HHHhcCChhHhHHHHHHHHhh---cCCc----hhHHhHHHHHHHhcCCHHHHHHHHhhcCC----------C-ChhhHHH
Q 045672 281 RACTGLALLELGTQVHVHVLK---YDHD----LILNNALLDMYCKCGSLEDAMSVFSRMIQ----------K-DVISWST 342 (643)
Q Consensus 281 ~a~~~~~~~~~a~~i~~~~~~---~~~~----~~~~~~Li~~y~~~g~~~~A~~~~~~m~~----------~-~~~~~~~ 342 (643)
..+...|+++.|...+..+.+ -..+ ......+...|...|++++|...+++... + ....+..
T Consensus 61 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 140 (373)
T 1hz4_A 61 EVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRI 140 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHH
Confidence 334444555555555555444 0111 12245566777788888888887776522 1 1235666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCC--C--CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHH-----H
Q 045672 343 MISGLAQNGYSQEALKLFESMKVSRIK--P--NYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYS-----C 413 (643)
Q Consensus 343 li~~~~~~g~~~~A~~l~~~m~~~g~~--p--~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~ 413 (643)
+...+...|++++|...+++....... + ...++..+...+...|++++|...++.......-......+. .
T Consensus 141 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~ 220 (373)
T 1hz4_A 141 RAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKV 220 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHH
Confidence 777888889999999999887653211 1 234566777788888999999999988765322111111121 2
Q ss_pred HHHHHHhcCCHHHHHHHHHhCC-CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----C-cchHHHHH
Q 045672 414 MIDLLGRAGKLQEAVKLIHEMP-YEPD-----AVTWRALLGACKVHRNTDLAICAAKKILNLDPQ-----D-PGTYILLS 481 (643)
Q Consensus 414 li~~~~~~g~~~~A~~~~~~m~-~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~-----~-~~~~~~l~ 481 (643)
.+..+...|++++|...+++.. ..|. ...+..+...+...|++++|...++++++..+. + ..++..++
T Consensus 221 ~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la 300 (373)
T 1hz4_A 221 RVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLN 300 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 3345778999999999998872 2221 235667777888999999999999998775432 1 23677889
Q ss_pred HHHHccCChhHHHHHHHHHHhC
Q 045672 482 NIYANSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 482 ~~~~~~g~~~~a~~~~~~m~~~ 503 (643)
.+|...|+.++|...+++..+.
T Consensus 301 ~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 301 QLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHH
Confidence 9999999999999999887653
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.26 E-value=2.5e-11 Score=119.93 Aligned_cols=53 Identities=13% Similarity=-0.017 Sum_probs=29.4
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHh
Q 045672 450 CKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 450 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
+...+.+.++...+++.....|..+.++..++.+|.+.|++++|.+++++..+
T Consensus 254 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 254 QKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ----CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34445555566666666666677777777888888888888888888777654
No 75
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.24 E-value=3e-10 Score=116.26 Aligned_cols=227 Identities=9% Similarity=-0.007 Sum_probs=156.8
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHhcCChhHhHHHHHHHHhh---cCC-----chhHHh
Q 045672 244 IIGGFAQNSDVDEALNLYKRMKRA----GFAA-DQSTLTSVLRACTGLALLELGTQVHVHVLK---YDH-----DLILNN 310 (643)
Q Consensus 244 li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~---~~~-----~~~~~~ 310 (643)
....+...|++++|+..|++..+. +-.+ ...++..+...+...|+++.|...+..+.+ ..+ ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 334445556666666666655442 1011 123445555555566666666666666555 111 124567
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCC-----CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHH
Q 045672 311 ALLDMYCKCGSLEDAMSVFSRMIQ-----KD----VISWSTMISGLAQNGYSQEALKLFESMKVS----RIKPN-YITIV 376 (643)
Q Consensus 311 ~Li~~y~~~g~~~~A~~~~~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~ 376 (643)
.+...|...|++++|...|++..+ .+ ..+|+.+...|...|++++|++.|++..+. +..|+ ..++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 778888888999888888877632 11 237888889999999999999999988662 33243 56788
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhc---CCCCChHHHHHHHHHHHhcCC---HHHHHHHHHhCCCCCCHH-HHHHHHHH
Q 045672 377 GVLFACSHAGFVEDGWNHFKSMKKFY---GIDPGREHYSCMIDLLGRAGK---LQEAVKLIHEMPYEPDAV-TWRALLGA 449 (643)
Q Consensus 377 ~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~p~~~-~~~~ll~~ 449 (643)
.+...+...|++++|...+++..+.. +.+.....+..+...|...|+ +++|..++++.+..|+.. .+..+...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 88889999999999999998876531 111223346678888889999 999999999986555443 56677788
Q ss_pred HHHcCCHHHHHHHHHHHHhcC
Q 045672 450 CKVHRNTDLAICAAKKILNLD 470 (643)
Q Consensus 450 ~~~~g~~~~a~~~~~~~~~~~ 470 (643)
+...|++++|...+++++++.
T Consensus 349 y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHH
Confidence 999999999999999998754
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.19 E-value=9.9e-10 Score=112.12 Aligned_cols=298 Identities=12% Similarity=0.032 Sum_probs=200.2
Q ss_pred CCchhHHHHHHHHH--HHcCCHHHHHHHHhhCCC--------CCcchHHHHHHHH--HhCCChhHHH---------HHHH
Q 045672 204 ESDVFVRSALIDIY--AKLGELRNAECVFNEMPT--------RDLVVWNSIIGGF--AQNSDVDEAL---------NLYK 262 (643)
Q Consensus 204 ~~~~~~~~~li~~y--~~~g~~~~A~~~f~~~~~--------~~~~~~~~li~~~--~~~g~~~~A~---------~~~~ 262 (643)
.|+..+.+.|-.-| .+.+++++|.++++++.. .++..|-.++..- ...+....+. +.++
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence 45555666666666 788999999888876532 2333334333321 1112222222 5555
Q ss_pred HHHHcCCCCCH-H---HHHHHHHHHhcCChhHhHHHHHHHHhh-c---CC---chhHHhHHHHHHHhcCCHHHHHHHHhh
Q 045672 263 RMKRAGFAADQ-S---TLTSVLRACTGLALLELGTQVHVHVLK-Y---DH---DLILNNALLDMYCKCGSLEDAMSVFSR 331 (643)
Q Consensus 263 ~m~~~g~~p~~-~---t~~~ll~a~~~~~~~~~a~~i~~~~~~-~---~~---~~~~~~~Li~~y~~~g~~~~A~~~~~~ 331 (643)
.+.....+.+. . .+......+...|+++.|...+..+.+ . +. ...++..+...|...|+++.|...+++
T Consensus 87 ~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~ 166 (378)
T 3q15_A 87 TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ 166 (378)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 55432111111 1 122233445688999999999999987 1 11 245778889999999999999888877
Q ss_pred cCC-----C-----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHH
Q 045672 332 MIQ-----K-----DVISWSTMISGLAQNGYSQEALKLFESMKVS----RIKP-NYITIVGVLFACSHAGFVEDGWNHFK 396 (643)
Q Consensus 332 m~~-----~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~ 396 (643)
..+ + ...+++.+...|...|++++|++.|++..+. +-.+ ...++..+...+...|++++|.+.|+
T Consensus 167 al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~ 246 (378)
T 3q15_A 167 ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQ 246 (378)
T ss_dssp HHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 621 1 2347888999999999999999999887652 1111 13467778888999999999999999
Q ss_pred HhHHhc---CCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC----CC--CCC-HHHHHHHHHHHHHcCC---HHHHHHHH
Q 045672 397 SMKKFY---GIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM----PY--EPD-AVTWRALLGACKVHRN---TDLAICAA 463 (643)
Q Consensus 397 ~~~~~~---~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~--~p~-~~~~~~ll~~~~~~g~---~~~a~~~~ 463 (643)
+..+.. +.+....++..+...|.+.|++++|.+.+++. +. .|. ...+..+...+...++ +++|+..+
T Consensus 247 ~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~ 326 (378)
T 3q15_A 247 KAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYF 326 (378)
T ss_dssp HHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 887611 22233667888999999999999999999876 11 233 2345555555677777 77777777
Q ss_pred HHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHh
Q 045672 464 KKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 464 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
++. ...|.....+..++..|...|++++|.+.+++..+
T Consensus 327 ~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 327 EKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 762 22233455778999999999999999999988764
No 77
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.19 E-value=1e-09 Score=98.81 Aligned_cols=167 Identities=12% Similarity=0.010 Sum_probs=142.0
Q ss_pred hHHhHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 045672 307 ILNNALLDMYCKCGSLEDAMSVFSRMIQK---DVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACS 383 (643)
Q Consensus 307 ~~~~~Li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 383 (643)
..+..+...|...|++++|...|+++.+. +...|..+...+...|++++|+..++++.+.. +.+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 34567788899999999999999998543 56788889999999999999999999998753 345778888888999
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHH
Q 045672 384 HAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PY-EPDAVTWRALLGACKVHRNTDLAIC 461 (643)
Q Consensus 384 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~ 461 (643)
..|++++|.+.++.+.+. .+.+...+..+...|.+.|++++|.+.++++ .. ..+...|..+...+...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999874 3456788899999999999999999999887 22 2356788899999999999999999
Q ss_pred HHHHHHhcCCCCcch
Q 045672 462 AAKKILNLDPQDPGT 476 (643)
Q Consensus 462 ~~~~~~~~~p~~~~~ 476 (643)
.++++++..|+++..
T Consensus 166 ~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 166 HFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHCCCGG
T ss_pred HHHHHHHcCCCchhh
Confidence 999999998877643
No 78
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.17 E-value=1.6e-09 Score=101.75 Aligned_cols=202 Identities=12% Similarity=0.062 Sum_probs=140.6
Q ss_pred CCHHHHHHHHHHHhcCChhHhHHHHHHHHhh-cC-CchhHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHH
Q 045672 271 ADQSTLTSVLRACTGLALLELGTQVHVHVLK-YD-HDLILNNALLDMYCKCGSLEDAMSVFSRMIQ---KDVISWSTMIS 345 (643)
Q Consensus 271 p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~-~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~ 345 (643)
.|+..+......+...|++++|...+..+.+ .+ ++...+..+...|.+.|++++|...|++..+ .+...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 3556777777778888888888888888888 44 6666666788888888888888888887743 24557778888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC-H-------HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC---hHHHHHH
Q 045672 346 GLAQNGYSQEALKLFESMKVSRIKPN-Y-------ITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPG---REHYSCM 414 (643)
Q Consensus 346 ~~~~~g~~~~A~~l~~~m~~~g~~p~-~-------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l 414 (643)
.|...|++++|+..|++..+. .|+ . ..+..+...+...|++++|.+.|+.+.+ ..|+ ...+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l 159 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHH
Confidence 888888888888888888764 344 3 3466666677788888888888888765 3454 4566667
Q ss_pred HHHHHhcCCH--HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 045672 415 IDLLGRAGKL--QEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIY 484 (643)
Q Consensus 415 i~~~~~~g~~--~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 484 (643)
...|...|+. ++|..+ . ..+...+.... ....+.+++|+..++++++++|+++.+...+..+.
T Consensus 160 ~~~~~~~~~~~~~~a~~~----~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 160 GVLFYNNGADVLRKATPL----A-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHHHHHHHGGG----T-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc----c-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 7777665543 222211 1 12333343332 33456679999999999999999887777666554
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.16 E-value=1.1e-09 Score=102.88 Aligned_cols=186 Identities=10% Similarity=-0.047 Sum_probs=87.8
Q ss_pred hHHhHHHHHHHhcCCHHHHHHHHhhcCC----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 045672 307 ILNNALLDMYCKCGSLEDAMSVFSRMIQ----KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPN-YITIVGVLFA 381 (643)
Q Consensus 307 ~~~~~Li~~y~~~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a 381 (643)
..+..+...|.+.|++++|...|++..+ ++...|..+..++...|++++|++.|++..+. .|+ ...+..+...
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKSAA 85 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHHHH
Confidence 4444455555555555555555554421 33444444555555555555555555555542 232 3344445555
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCCh-------HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHH
Q 045672 382 CSHAGFVEDGWNHFKSMKKFYGIDPGR-------EHYSCMIDLLGRAGKLQEAVKLIHEM-PYEPD---AVTWRALLGAC 450 (643)
Q Consensus 382 ~~~~g~~~~a~~~~~~~~~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~---~~~~~~ll~~~ 450 (643)
+...|++++|...++...+. .+.+. ..|..+...+.+.|++++|.+.|++. ...|+ ...|..+...+
T Consensus 86 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 163 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLF 163 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 55555555555555555442 11122 23444444455555555555555444 33343 12333333333
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhC
Q 045672 451 KVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 451 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 503 (643)
.. .+...++++..+.+.++..|..+ .....+.+++|...+++..+.
T Consensus 164 ~~-----~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 164 YN-----NGADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HH-----HHHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HH-----HHHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhc
Confidence 22 22333444444444333222222 222334458999999888764
No 80
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.15 E-value=8.9e-10 Score=115.92 Aligned_cols=190 Identities=11% Similarity=-0.027 Sum_probs=86.6
Q ss_pred CcchHHHHHHHHHhCCCh-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhhcCCchhHHhHHHHH
Q 045672 237 DLVVWNSIIGGFAQNSDV-DEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDM 315 (643)
Q Consensus 237 ~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~Li~~ 315 (643)
+...|..+...|...|++ ++|++.|++..+.. +-+...+..+..++...|++++|...+..+.+..|+...+..+...
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~lg~~ 179 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMV 179 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 344555555555666666 66666666555532 1123444444444444444444444444444433333444444444
Q ss_pred HHhc---------CCHHHHHHHHhhcCC---CChhhHHHHHHHHHhc--------CCHHHHHHHHHHHHHCCCCC----C
Q 045672 316 YCKC---------GSLEDAMSVFSRMIQ---KDVISWSTMISGLAQN--------GYSQEALKLFESMKVSRIKP----N 371 (643)
Q Consensus 316 y~~~---------g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~--------g~~~~A~~l~~~m~~~g~~p----~ 371 (643)
|... |++++|...|++..+ .+...|..+..+|... |++++|++.|++..+. .| +
T Consensus 180 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~ 257 (474)
T 4abn_A 180 LRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV--DRKASSN 257 (474)
T ss_dssp HTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH--CGGGGGC
T ss_pred HHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh--CCCcccC
Confidence 4444 444444444444321 2333444444444444 4444444444444442 22 3
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 045672 372 YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLI 431 (643)
Q Consensus 372 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 431 (643)
...+..+..++...|++++|.+.|++..+. .+.+...+..+..++...|++++|.+.+
T Consensus 258 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 258 PDLHLNRATLHKYEESYGEALEGFSQAAAL--DPAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444444444444431 1112333444444444444444444433
No 81
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.12 E-value=1.8e-10 Score=113.63 Aligned_cols=234 Identities=13% Similarity=0.046 Sum_probs=130.4
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHhhCCC--------C---CcchHHHHHHHHHhCCChhHHHHHHHHHHHc------CC
Q 045672 207 VFVRSALIDIYAKLGELRNAECVFNEMPT--------R---DLVVWNSIIGGFAQNSDVDEALNLYKRMKRA------GF 269 (643)
Q Consensus 207 ~~~~~~li~~y~~~g~~~~A~~~f~~~~~--------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~ 269 (643)
..++..+...|...|++++|..+|+++.+ . ...++..+...|...|++++|+..|++.... +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 45566677777777888877777776543 1 2345666777777777777777777766543 11
Q ss_pred CCCHHHHHHHHHHHhcCChhHhHHHHHHHHhhcCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCC-----------CChh
Q 045672 270 AADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ-----------KDVI 338 (643)
Q Consensus 270 ~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~-----------~~~~ 338 (643)
.|. ...++..+...|...|++++|...|++..+ ....
T Consensus 107 ~~~--------------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 154 (311)
T 3nf1_A 107 HPA--------------------------------VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAK 154 (311)
T ss_dssp CHH--------------------------------HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ChH--------------------------------HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 111 122334444555555555555555544421 1223
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhc------CCC
Q 045672 339 SWSTMISGLAQNGYSQEALKLFESMKVS------RIKPN-YITIVGVLFACSHAGFVEDGWNHFKSMKKFY------GID 405 (643)
Q Consensus 339 ~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~------~~~ 405 (643)
.|..+...|...|++++|++.|+++... +..|+ ..++..+...+...|++++|...++.+.+.. ...
T Consensus 155 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 234 (311)
T 3nf1_A 155 QLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVD 234 (311)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 4555666666666666666666665542 11222 3345556666666677777776666665420 001
Q ss_pred C-------ChHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 045672 406 P-------GREHYSCMIDLLGRAGKLQEAVKLIHEMP-YEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQ 472 (643)
Q Consensus 406 p-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 472 (643)
+ ....+..+...+...+.+.+|...+.... ..| +..+|..+...+...|++++|...+++++++.|.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 235 DENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp ---CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred cchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 1 12234444555666777777777777763 233 3457888888899999999999999999988764
No 82
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.11 E-value=1.1e-08 Score=104.40 Aligned_cols=223 Identities=11% Similarity=0.100 Sum_probs=147.8
Q ss_pred HHHhCCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhcCChhHhHHHHHHHHhh-c--CC-----chhHHhHHH
Q 045672 247 GFAQNSDVDEALNLYKRMKRAGF-AAD----QSTLTSVLRACTGLALLELGTQVHVHVLK-Y--DH-----DLILNNALL 313 (643)
Q Consensus 247 ~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~--~~-----~~~~~~~Li 313 (643)
.+...|++++|+..|++..+... .++ ..++..+..++...|+++.|...+..+.+ . .+ ...+++.+.
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 189 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 34445555555555555443210 011 22344444455555555555555555554 1 01 123556777
Q ss_pred HHHHhcCCHHHHHHHHhhcCC-----CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHH
Q 045672 314 DMYCKCGSLEDAMSVFSRMIQ-----KD----VISWSTMISGLAQNGYSQEALKLFESMKVS----RIKPNYITIVGVLF 380 (643)
Q Consensus 314 ~~y~~~g~~~~A~~~~~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~~t~~~ll~ 380 (643)
..|...|++++|...|++..+ .+ ..+++.+...|...|++++|++.|++.... +.+....++..+..
T Consensus 190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 269 (378)
T 3q15_A 190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSW 269 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHH
Confidence 888888888888888776632 11 246778888899999999999999887661 22223667788888
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCC---CCChHHHHHHHHHHHhcCC---HHHHHHHHHhCCCCCCHH-HHHHHHHHHHHc
Q 045672 381 ACSHAGFVEDGWNHFKSMKKFYGI---DPGREHYSCMIDLLGRAGK---LQEAVKLIHEMPYEPDAV-TWRALLGACKVH 453 (643)
Q Consensus 381 a~~~~g~~~~a~~~~~~~~~~~~~---~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~p~~~-~~~~ll~~~~~~ 453 (643)
.+.+.|++++|...+++..+...- +.....+..+...|...|+ +.+|...+++.+..|+.. .+..+...+...
T Consensus 270 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~ 349 (378)
T 3q15_A 270 TLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESS 349 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHC
Confidence 999999999999999988774222 1123456667777778888 899999999875544433 556677889999
Q ss_pred CCHHHHHHHHHHHHhc
Q 045672 454 RNTDLAICAAKKILNL 469 (643)
Q Consensus 454 g~~~~a~~~~~~~~~~ 469 (643)
|++++|...++++++.
T Consensus 350 g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 350 CHFEQAAAFYRKVLKA 365 (378)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999998764
No 83
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.07 E-value=4.7e-08 Score=99.28 Aligned_cols=258 Identities=10% Similarity=-0.002 Sum_probs=183.4
Q ss_pred HHHHHHHcCCHHHHHHHHhhCC----CCCc----chHHHHHHHHHhCCChhHHHHHHHHHHHcCC-CCCH----HHHHHH
Q 045672 213 LIDIYAKLGELRNAECVFNEMP----TRDL----VVWNSIIGGFAQNSDVDEALNLYKRMKRAGF-AADQ----STLTSV 279 (643)
Q Consensus 213 li~~y~~~g~~~~A~~~f~~~~----~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~----~t~~~l 279 (643)
+...+...|++++|...+++.. ..+. .+++.+...+...|++++|...+++...... .++. .++..+
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 4456778899999999887642 2222 2466677888889999999999988765311 1122 234566
Q ss_pred HHHHhcCChhHhHHHHHHHHhh-c---C----C-chhHHhHHHHHHHhcCCHHHHHHHHhhcCC--C------ChhhHHH
Q 045672 280 LRACTGLALLELGTQVHVHVLK-Y---D----H-DLILNNALLDMYCKCGSLEDAMSVFSRMIQ--K------DVISWST 342 (643)
Q Consensus 280 l~a~~~~~~~~~a~~i~~~~~~-~---~----~-~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~--~------~~~~~~~ 342 (643)
...+...|+++.|...+..+.+ . . + ....+..+...|...|++++|...+++... + ...+|..
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 179 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 6778889999999999999887 1 1 2 234567788899999999999999987621 1 2346777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHH-----HHHHHHhccCCHHHHHHHHHHhHHhcCCCC---ChHHHHH
Q 045672 343 MISGLAQNGYSQEALKLFESMKVSRIKPN-YITIV-----GVLFACSHAGFVEDGWNHFKSMKKFYGIDP---GREHYSC 413 (643)
Q Consensus 343 li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~-----~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p---~~~~~~~ 413 (643)
+...+...|++++|...+++.....-.++ ...+. ..+..+...|+.++|...++..... ...+ ....+..
T Consensus 180 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~ 258 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP-EFANNHFLQGQWRN 258 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC-CCTTCGGGHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCC-CCCcchhhHHHHHH
Confidence 88889999999999999998865321221 11121 2234467899999999999887652 2111 1224677
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-------CCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 045672 414 MIDLLGRAGKLQEAVKLIHEM-------PYEPDAV-TWRALLGACKVHRNTDLAICAAKKILNLDP 471 (643)
Q Consensus 414 li~~~~~~g~~~~A~~~~~~m-------~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 471 (643)
+...+...|++++|.+.+++. +..++.. .+..+..++...|+.++|...++++++..+
T Consensus 259 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 259 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 888999999999999998876 1111222 555566778899999999999999987654
No 84
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.04 E-value=3e-09 Score=103.07 Aligned_cols=219 Identities=15% Similarity=0.134 Sum_probs=152.2
Q ss_pred hcCChhHhHHHHHHHHhh-----c----CCchhHHhHHHHHHHhcCCHHHHHHHHhhcCC----------C-ChhhHHHH
Q 045672 284 TGLALLELGTQVHVHVLK-----Y----DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ----------K-DVISWSTM 343 (643)
Q Consensus 284 ~~~~~~~~a~~i~~~~~~-----~----~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~----------~-~~~~~~~l 343 (643)
...|+++.|...++.+.+ . +....++..+...|...|++++|...|++..+ + ...+|..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 456788888888888776 1 22356788899999999999999999987732 1 34578888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhc-----CCCC-ChHH
Q 045672 344 ISGLAQNGYSQEALKLFESMKVS------RIKPN-YITIVGVLFACSHAGFVEDGWNHFKSMKKFY-----GIDP-GREH 410 (643)
Q Consensus 344 i~~~~~~g~~~~A~~l~~~m~~~------g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~~~p-~~~~ 410 (643)
...|...|++++|++.|++.... .-.|+ ..++..+...+...|++++|..+++++.+.. +..| ....
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999988763 11233 5677788888999999999999999887631 1122 3557
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC----------CCCC-HHHHHHHHHHHHHcCC------HHHHHHHHHHHHhcCCCC
Q 045672 411 YSCMIDLLGRAGKLQEAVKLIHEMP----------YEPD-AVTWRALLGACKVHRN------TDLAICAAKKILNLDPQD 473 (643)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~----------~~p~-~~~~~~ll~~~~~~g~------~~~a~~~~~~~~~~~p~~ 473 (643)
+..+...|.+.|++++|.+.++++- ..+. ...|..+.......+. +..+...++......|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 8888999999999999999887661 1222 2233333333333222 233333333332333555
Q ss_pred cchHHHHHHHHHccCChhHHHHHHHHHHh
Q 045672 474 PGTYILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 474 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
+.++..++.+|...|++++|.+++++..+
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 67899999999999999999999998875
No 85
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.01 E-value=9.1e-09 Score=100.75 Aligned_cols=165 Identities=10% Similarity=-0.022 Sum_probs=87.5
Q ss_pred HhHHHHHHHhcCCHHHHHHHHhhcCCC-----C----hhhHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCC-CC----HH
Q 045672 309 NNALLDMYCKCGSLEDAMSVFSRMIQK-----D----VISWSTMISGLAQN-GYSQEALKLFESMKVSRIK-PN----YI 373 (643)
Q Consensus 309 ~~~Li~~y~~~g~~~~A~~~~~~m~~~-----~----~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~-p~----~~ 373 (643)
++.+..+|.+.|++++|...|++..+- + ..+|+.+...|... |++++|+..|++..+.... .+ ..
T Consensus 80 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~ 159 (292)
T 1qqe_A 80 YVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNK 159 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHH
Confidence 344444444555555554444433210 1 23556666667664 7777777777766542100 01 23
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh-----HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH------
Q 045672 374 TIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGR-----EHYSCMIDLLGRAGKLQEAVKLIHEM-PYEPDAV------ 441 (643)
Q Consensus 374 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~------ 441 (643)
++..+...+...|++++|...|+...+...-.+.. ..|..+..++...|++++|...+++. .+.|+..
T Consensus 160 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~ 239 (292)
T 1qqe_A 160 CFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESN 239 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 45666667777777777777777766531111111 14555666677777777777777665 3334321
Q ss_pred HHHHHHHHHH--HcCCHHHHHHHHHHHHhcCCCC
Q 045672 442 TWRALLGACK--VHRNTDLAICAAKKILNLDPQD 473 (643)
Q Consensus 442 ~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~p~~ 473 (643)
.+..++.++. ..+++++|+..|+++..++|..
T Consensus 240 ~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 240 FLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp HHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence 2333444443 3455777777776666666644
No 86
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.00 E-value=3.7e-09 Score=115.89 Aligned_cols=162 Identities=15% Similarity=0.118 Sum_probs=128.4
Q ss_pred chhHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 045672 305 DLILNNALLDMYCKCGSLEDAMSVFSRMIQ---KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPN-YITIVGVLF 380 (643)
Q Consensus 305 ~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~ 380 (643)
+...++.|...|.+.|++++|.+.|++..+ .+..+|+.+...|.+.|++++|++.|++.++. .|+ ...+..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 345677788888888888888888887642 35678888888888888888888888888774 455 677888888
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHH
Q 045672 381 ACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDL 458 (643)
Q Consensus 381 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~ 458 (643)
++...|++++|++.|++..+. -+-+...|..+..+|.+.|++++|++.|++. ...| +...|..+...+...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 888889999998888888763 2235678888888899999999999888876 4455 45678888888899999999
Q ss_pred HHHHHHHHHhcC
Q 045672 459 AICAAKKILNLD 470 (643)
Q Consensus 459 a~~~~~~~~~~~ 470 (643)
|.+.+++++++.
T Consensus 164 A~~~~~kal~l~ 175 (723)
T 4gyw_A 164 YDERMKKLVSIV 175 (723)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC
Confidence 999888887654
No 87
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.99 E-value=4.5e-08 Score=93.93 Aligned_cols=204 Identities=11% Similarity=0.040 Sum_probs=121.3
Q ss_pred chhHHhHHHHHHHhcCCHHHHHHHHhhcCCC---C---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC-HHHHH
Q 045672 305 DLILNNALLDMYCKCGSLEDAMSVFSRMIQK---D---VISWSTMISGLAQNGYSQEALKLFESMKVSRI-KPN-YITIV 376 (643)
Q Consensus 305 ~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~---~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~-~~t~~ 376 (643)
+...+..+...+.+.|++++|...|+.+.+. + ...+..+..+|.+.|++++|+..|++..+... .|. ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 3344455555666666666666666665332 2 33455555666666666666666666655321 111 23344
Q ss_pred HHHHHHhc--------cCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHH
Q 045672 377 GVLFACSH--------AGFVEDGWNHFKSMKKFYGIDPG-REHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALL 447 (643)
Q Consensus 377 ~ll~a~~~--------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll 447 (643)
.+..++.. .|++++|...|+.+.+. .|+ ......+.......+.+ ...+..+.
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la 155 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR---YPNHELVDDATQKIRELRAKL---------------ARKQYEAA 155 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH---CTTCTTHHHHHHHHHHHHHHH---------------HHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHH---CcCchhHHHHHHHHHHHHHHH---------------HHHHHHHH
Confidence 44445555 56666666666666553 121 11111111110000000 01135566
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCc---chHHHHHHHHHcc----------CChhHHHHHHHHHHhCCCCcCCceeEE
Q 045672 448 GACKVHRNTDLAICAAKKILNLDPQDP---GTYILLSNIYANS----------QKWDEVAEVRKTMRARGITKEPGCSWI 514 (643)
Q Consensus 448 ~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~g~~~~~~~s~~ 514 (643)
..+...|++++|+..++++++..|+++ .++..++.+|... |++++|...++++.+.. |
T Consensus 156 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~----p----- 226 (261)
T 3qky_A 156 RLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF----P----- 226 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC----T-----
T ss_pred HHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC----C-----
Confidence 778999999999999999999999844 4788999999877 89999999999998643 2
Q ss_pred EECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHh
Q 045672 515 EVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVG 549 (643)
Q Consensus 515 ~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~~~~ 549 (643)
.+|...++...+.++...+.+
T Consensus 227 --------------~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 227 --------------DSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp --------------TCTHHHHHHHHHHHHHHHHHH
T ss_pred --------------CChHHHHHHHHHHHHHHHHHH
Confidence 134556666666666666554
No 88
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.95 E-value=1.2e-08 Score=99.98 Aligned_cols=227 Identities=12% Similarity=0.066 Sum_probs=156.3
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcC-C-hhHhHHHHHHHHhhcCCchhHHhHHHHHHHhcCCHHHHHHHHhhcC
Q 045672 256 EALNLYKRMKRAGFAADQSTLTSVLRACTGL-A-LLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMI 333 (643)
Q Consensus 256 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~-~-~~~~a~~i~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~ 333 (643)
+|.+++.+..+. .++....+ .++ ... + +++.|...+..+ ...|...|++++|...|++..
T Consensus 3 ~a~~~~~~a~k~-~~~~~~~~-~~~---~~~~~~~~~~A~~~~~~a-------------~~~~~~~g~~~~A~~~~~~al 64 (292)
T 1qqe_A 3 DPVELLKRAEKK-GVPSSGFM-KLF---SGSDSYKFEEAADLCVQA-------------ATIYRLRKELNLAGDSFLKAA 64 (292)
T ss_dssp CHHHHHHHHHHH-SSCCCTHH-HHH---SCCSHHHHHHHHHHHHHH-------------HHHHHHTTCTHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH-hCcCCCcc-hhc---CCCCCccHHHHHHHHHHH-------------HHHHHHcCCHHHHHHHHHHHH
Confidence 466677766664 23221122 222 221 2 477777766544 556788999999998888763
Q ss_pred C-------C--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CCC--HHHHHHHHHHHhcc-CCHHHHHHHHHHh
Q 045672 334 Q-------K--DVISWSTMISGLAQNGYSQEALKLFESMKVSRI---KPN--YITIVGVLFACSHA-GFVEDGWNHFKSM 398 (643)
Q Consensus 334 ~-------~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~p~--~~t~~~ll~a~~~~-g~~~~a~~~~~~~ 398 (643)
. + ...+|+.+...|...|++++|+..|++...... .+. ..++..+...|... |++++|...|++.
T Consensus 65 ~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~A 144 (292)
T 1qqe_A 65 DYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELA 144 (292)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 2 1 145889999999999999999999998765211 111 35788888899996 9999999999998
Q ss_pred HHhcCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC---CH-----HHHHHHHHHHHHcCCHHHHHHHHHH
Q 045672 399 KKFYGIDPG----REHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP---DA-----VTWRALLGACKVHRNTDLAICAAKK 465 (643)
Q Consensus 399 ~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~-----~~~~~ll~~~~~~g~~~~a~~~~~~ 465 (643)
.+...-..+ ..++..+...|.+.|++++|.+.|++. ...| +. ..|..+..++...|+++.|+..+++
T Consensus 145 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 224 (292)
T 1qqe_A 145 GEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQE 224 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHG
T ss_pred HHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 763211111 356888999999999999999999887 2222 21 1566777788999999999999999
Q ss_pred HHhcCCCCcch-----HHHHHHHHH--ccCChhHHHHHHHHH
Q 045672 466 ILNLDPQDPGT-----YILLSNIYA--NSQKWDEVAEVRKTM 500 (643)
Q Consensus 466 ~~~~~p~~~~~-----~~~l~~~~~--~~g~~~~a~~~~~~m 500 (643)
.++++|+.... +..++.+|. ..+++++|.+.++++
T Consensus 225 al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 225 GQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp GGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 99999975442 445666665 457788888877544
No 89
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.94 E-value=9.5e-08 Score=91.96 Aligned_cols=174 Identities=9% Similarity=-0.039 Sum_probs=99.5
Q ss_pred HHHHHhhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 045672 325 AMSVFSRMIQ---KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKP-NYITIVGVLFACSHAGFVEDGWNHFKSMKK 400 (643)
Q Consensus 325 A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 400 (643)
|...|++... ++..++..+..++...|++++|++++.+.+..|..+ +...+..++..+.+.|+.+.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4445554432 334444455666666677777777776665543212 344555556666667777777777776655
Q ss_pred hcCCCC-----ChHHHHHHHHH--HHh--cCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-
Q 045672 401 FYGIDP-----GREHYSCMIDL--LGR--AGKLQEAVKLIHEM-PYEPDAVTWRALLGACKVHRNTDLAICAAKKILNL- 469 (643)
Q Consensus 401 ~~~~~p-----~~~~~~~li~~--~~~--~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~- 469 (643)
. .| +..+...|+.+ ... .+++++|..+|+++ ...|+..+-..++.++...|++++|+..++.+.+.
T Consensus 165 ~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 A---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp H---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred c---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 2 44 23333334333 222 23677777777766 22344223333344666777777777777766654
Q ss_pred ---------CCCCcchHHHHHHHHHccCChhHHHHHHHHHHhC
Q 045672 470 ---------DPQDPGTYILLSNIYANSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 470 ---------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 503 (643)
+|+++.++..++.++...|+ +|.++++++++.
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 36677777666666666665 677777777653
No 90
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.93 E-value=2.5e-08 Score=84.14 Aligned_cols=93 Identities=23% Similarity=0.279 Sum_probs=57.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHcc
Q 045672 410 HYSCMIDLLGRAGKLQEAVKLIHEM-P-YEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANS 487 (643)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 487 (643)
.+..+...+...|++++|.+.++++ . ...+...|..+...+...|++++|...++++++..|.++..+..++.+|...
T Consensus 37 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 116 (136)
T 2fo7_A 37 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 116 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 3344444444444444444444443 1 1123445556666666777777777777777777777777777777777777
Q ss_pred CChhHHHHHHHHHHh
Q 045672 488 QKWDEVAEVRKTMRA 502 (643)
Q Consensus 488 g~~~~a~~~~~~m~~ 502 (643)
|++++|.+.++++.+
T Consensus 117 ~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 117 GDYDEAIEYYQKALE 131 (136)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHc
Confidence 777777777777664
No 91
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.93 E-value=3.4e-08 Score=95.51 Aligned_cols=163 Identities=13% Similarity=0.058 Sum_probs=97.8
Q ss_pred hHHhHHHHHHHhcCCHHHHHHHHhhcCC----------C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCC
Q 045672 307 ILNNALLDMYCKCGSLEDAMSVFSRMIQ----------K-DVISWSTMISGLAQNGYSQEALKLFESMKVS------RIK 369 (643)
Q Consensus 307 ~~~~~Li~~y~~~g~~~~A~~~~~~m~~----------~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~ 369 (643)
.++..+...|...|++++|...|++... + ...+|..+...|...|++++|+..|++..+. +-.
T Consensus 86 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 165 (283)
T 3edt_B 86 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDD 165 (283)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3455666666667777777666665521 1 2346777777788888888888888877653 112
Q ss_pred CC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhc------CCCCC-hHHHHHHHHHHHhc------CCHHHHHHHHHhCC
Q 045672 370 PN-YITIVGVLFACSHAGFVEDGWNHFKSMKKFY------GIDPG-REHYSCMIDLLGRA------GKLQEAVKLIHEMP 435 (643)
Q Consensus 370 p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~------~~~p~-~~~~~~li~~~~~~------g~~~~A~~~~~~m~ 435 (643)
|+ ..++..+...+...|++++|..+++.+.+.. ...+. ...+..+...+... ..+.++...++...
T Consensus 166 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (283)
T 3edt_B 166 PNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACK 245 (283)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcC
Confidence 32 4567777788888888888888888776521 11222 22333333333322 23455555555553
Q ss_pred C-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 045672 436 Y-EPD-AVTWRALLGACKVHRNTDLAICAAKKILNL 469 (643)
Q Consensus 436 ~-~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 469 (643)
. .|+ ..++..+...+...|++++|...++++++.
T Consensus 246 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 246 VDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2 232 346778888899999999999999998875
No 92
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.92 E-value=4.1e-08 Score=82.82 Aligned_cols=131 Identities=17% Similarity=0.198 Sum_probs=98.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHH
Q 045672 339 SWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLL 418 (643)
Q Consensus 339 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 418 (643)
.|..+...+...|++++|+.+|+++.+.. +.+...+..+...+...|++++|..+++.+.+. .+.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 46667777778888888888888877643 334566777777777888888888888887763 234566777788888
Q ss_pred HhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 045672 419 GRAGKLQEAVKLIHEM-PY-EPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQ 472 (643)
Q Consensus 419 ~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 472 (643)
.+.|++++|.+.++++ .. ..+...|..+...+...|++++|...++++++.+|+
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 8888888888888776 22 235667888888888899999999999998888775
No 93
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.91 E-value=3.1e-08 Score=95.14 Aligned_cols=201 Identities=12% Similarity=0.035 Sum_probs=142.5
Q ss_pred CCHHHHHHHHHHHhcCChhHhHHHHHHHHhh-cCCc---hhHHhHHHHHHHhcCCHHHHHHHHhhcCC--C----ChhhH
Q 045672 271 ADQSTLTSVLRACTGLALLELGTQVHVHVLK-YDHD---LILNNALLDMYCKCGSLEDAMSVFSRMIQ--K----DVISW 340 (643)
Q Consensus 271 p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~---~~~~~~Li~~y~~~g~~~~A~~~~~~m~~--~----~~~~~ 340 (643)
.+...+-.....+...|+++.|...+..+.+ .+.+ ...+..+...|.+.|++++|...|++..+ | ....+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 3556677777888899999999999999999 4444 57788899999999999999999999853 2 23467
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHH
Q 045672 341 STMISGLAQ--------NGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYS 412 (643)
Q Consensus 341 ~~li~~~~~--------~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 412 (643)
..+..++.. .|++++|+..|++.... .|+.... ..+...+..+... -...+.
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~-------------~~a~~~~~~~~~~-----~~~~~~ 152 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELV-------------DDATQKIRELRAK-----LARKQY 152 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTH-------------HHHHHHHHHHHHH-----HHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhH-------------HHHHHHHHHHHHH-----HHHHHH
Confidence 778888888 99999999999999875 4543211 1111111111110 012355
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhcCCCCcc--
Q 045672 413 CMIDLLGRAGKLQEAVKLIHEM-PYEPD----AVTWRALLGACKVH----------RNTDLAICAAKKILNLDPQDPG-- 475 (643)
Q Consensus 413 ~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~-- 475 (643)
.+...|.+.|++++|...|+++ ...|+ ...+..+..++... |++++|+..++++++..|+++.
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 232 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLR 232 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHH
Confidence 6778888899999999888876 22233 34566666777655 8999999999999999998863
Q ss_pred -hHHHHHHHHHccCChh
Q 045672 476 -TYILLSNIYANSQKWD 491 (643)
Q Consensus 476 -~~~~l~~~~~~~g~~~ 491 (643)
+...+..++.+.|+++
T Consensus 233 ~a~~~l~~~~~~~~~~~ 249 (261)
T 3qky_A 233 TAEELYTRARQRLTELE 249 (261)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 3444555555444443
No 94
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.90 E-value=1.4e-07 Score=88.33 Aligned_cols=179 Identities=12% Similarity=0.018 Sum_probs=114.0
Q ss_pred hHHhHHHHHHHhcCCHHHHHHHHhhcCC--CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHH
Q 045672 307 ILNNALLDMYCKCGSLEDAMSVFSRMIQ--KD----VISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNY----ITIV 376 (643)
Q Consensus 307 ~~~~~Li~~y~~~g~~~~A~~~~~~m~~--~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~ 376 (643)
..+..+...+.+.|++++|...|+++.+ |+ ...+..+..+|.+.|++++|+..|+++.+. .|+. ..+.
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~ 82 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHH
Confidence 3445566677778888888888887743 22 235666777788888888888888887764 3332 1333
Q ss_pred HHHHHHhc------------------cCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 045672 377 GVLFACSH------------------AGFVEDGWNHFKSMKKFYGIDPG-REHYSCMIDLLGRAGKLQEAVKLIHEMPYE 437 (643)
Q Consensus 377 ~ll~a~~~------------------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 437 (643)
.+..++.. .|+.++|...|+.+.+. .|+ ...+.+...+ +......
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l----~~~~~~~--------- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRL----VFLKDRL--------- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHH----HHHHHHH---------
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHH----HHHHHHH---------
Confidence 33333332 34566666666665542 222 1111111100 0000000
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc---chHHHHHHHHHccCChhHHHHHHHHHHhCCC
Q 045672 438 PDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDP---GTYILLSNIYANSQKWDEVAEVRKTMRARGI 505 (643)
Q Consensus 438 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 505 (643)
......+...+...|+++.|+..++++++..|+++ .++..++.+|.+.|++++|.+.++.+...+.
T Consensus 147 --~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 147 --AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred --HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 00112345568899999999999999999999875 5789999999999999999999999987654
No 95
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.89 E-value=2.1e-07 Score=89.55 Aligned_cols=239 Identities=8% Similarity=-0.007 Sum_probs=160.1
Q ss_pred HHHcCCHHHHHHHHhhCCCCCc-chHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHH
Q 045672 217 YAKLGELRNAECVFNEMPTRDL-VVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQV 295 (643)
Q Consensus 217 y~~~g~~~~A~~~f~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i 295 (643)
..-.|++..+..-...+...+. ..---+..+|...|+++.. ..-.|....+..+..-+ ..+ +...
T Consensus 23 ~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~----a~~~ 88 (310)
T 3mv2_B 23 NYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK----NIEE 88 (310)
T ss_dssp HHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----CCHH
T ss_pred HHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----HHHH
Confidence 3446777777775555543222 2222345677777776532 11233332333322222 222 4455
Q ss_pred HHHHhh-cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCCC-----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 045672 296 HVHVLK-YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQK-----DVISWSTMISGLAQNGYSQEALKLFESMKVSRIK 369 (643)
Q Consensus 296 ~~~~~~-~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 369 (643)
++.... -.++......+..+|...|++++|.+++.+.... +...+-.++..+.+.|+.+.|.+.+++|.+. .
T Consensus 89 l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~ 166 (310)
T 3mv2_B 89 LENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--I 166 (310)
T ss_dssp HHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--S
T ss_pred HHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--C
Confidence 555544 2344455567888999999999999999987433 4567778889999999999999999999874 6
Q ss_pred C-----CHHHHHHHHHHH--hccC--CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CC---
Q 045672 370 P-----NYITIVGVLFAC--SHAG--FVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PY--- 436 (643)
Q Consensus 370 p-----~~~t~~~ll~a~--~~~g--~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~--- 436 (643)
| +..+...+..++ ...| +..+|..+|+++... .|+......+..++.+.|++++|.+.++.+ ..
T Consensus 167 ~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~ 243 (310)
T 3mv2_B 167 EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYS 243 (310)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHH
T ss_pred ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 7 466666777663 3334 899999999999764 455334444555899999999999998765 21
Q ss_pred -------CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcch
Q 045672 437 -------EP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGT 476 (643)
Q Consensus 437 -------~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 476 (643)
.| |..+...++......|+ +|.++++++.+..|+++..
T Consensus 244 ~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 244 VEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp TTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred ccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 24 45566567666666787 8999999999999999744
No 96
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.88 E-value=2.2e-09 Score=93.40 Aligned_cols=140 Identities=10% Similarity=-0.048 Sum_probs=95.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCH
Q 045672 346 GLAQNGYSQEALKLFESMKVSRIKPN-YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKL 424 (643)
Q Consensus 346 ~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 424 (643)
.+...|++++|++.+++.... .|+ ...+..+...|.+.|++++|.+.|++..+. -+-+...|..+..+|.+.|++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCch
Confidence 334456666666666665432 232 334445666667777777777777776652 223566677777777777777
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHH-HHHHHhcCCCCcchHHHHHHHHHccCC
Q 045672 425 QEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICA-AKKILNLDPQDPGTYILLSNIYANSQK 489 (643)
Q Consensus 425 ~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~ 489 (643)
++|...|++. ...| +...|..+...+...|++++|.+. ++++++++|+++.+|.....++...|+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 7777777665 3345 456788888888888888766554 589999999999999888888888775
No 97
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.85 E-value=8.4e-08 Score=93.48 Aligned_cols=175 Identities=13% Similarity=-0.013 Sum_probs=136.8
Q ss_pred HHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 045672 322 LEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKP-NYITIVGVLFACSHAGFVEDGWNHFKSMKK 400 (643)
Q Consensus 322 ~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 400 (643)
.+.....+......+...+..+...+.+.|++++|+..|++..+. .| +...+..+...+...|++++|...++.+.+
T Consensus 102 ~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~ 179 (287)
T 3qou_A 102 EEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL 179 (287)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch
Confidence 344445555555455667777888889999999999999998875 45 466777888899999999999999998866
Q ss_pred hcCCCCChHHHHHH-HHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--cc
Q 045672 401 FYGIDPGREHYSCM-IDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQD--PG 475 (643)
Q Consensus 401 ~~~~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~ 475 (643)
. .|+....... ...+.+.++.++|.+.+++. ...| +...+..+...+...|++++|+..++++++.+|++ ..
T Consensus 180 ~---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~ 256 (287)
T 3qou_A 180 Q---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQ 256 (287)
T ss_dssp G---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGH
T ss_pred h---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccch
Confidence 3 4554433322 23366777788888887776 3334 56788899999999999999999999999999987 78
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHH
Q 045672 476 TYILLSNIYANSQKWDEVAEVRKTMR 501 (643)
Q Consensus 476 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 501 (643)
++..++.+|...|+.++|...+++..
T Consensus 257 a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 257 TRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 99999999999999999998887654
No 98
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.84 E-value=1.4e-08 Score=111.83 Aligned_cols=169 Identities=9% Similarity=-0.033 Sum_probs=136.6
Q ss_pred HhcCCHHHHHHHHhhcC-----------CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 045672 317 CKCGSLEDAMSVFSRMI-----------QKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHA 385 (643)
Q Consensus 317 ~~~g~~~~A~~~~~~m~-----------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 385 (643)
...|++++|.+.|++.. ..+...|..+...|.+.|++++|++.|++..+.. +-+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 67899999999988876 3356678888889999999999999999988742 23466788888888999
Q ss_pred CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Q 045672 386 GFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAA 463 (643)
Q Consensus 386 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~ 463 (643)
|++++|...|++..+. .+.+...+..+..+|.+.|++++ .+.|++. ...| +...|..+..++...|++++|+..+
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999998873 23356788888999999999999 8888876 3344 5668888888899999999999999
Q ss_pred HHHHhcCCCCcchHHHHHHHHHccCC
Q 045672 464 KKILNLDPQDPGTYILLSNIYANSQK 489 (643)
Q Consensus 464 ~~~~~~~p~~~~~~~~l~~~~~~~g~ 489 (643)
+++++++|++..++..++.+|...|+
T Consensus 558 ~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HhhcccCcccHHHHHHHHHHHHccCC
Confidence 99999999988899999999877665
No 99
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.81 E-value=3.1e-07 Score=84.97 Aligned_cols=172 Identities=8% Similarity=-0.064 Sum_probs=136.8
Q ss_pred HHHHHhhcC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC----CHHHHHHHHHHhH
Q 045672 325 AMSVFSRMI-QKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAG----FVEDGWNHFKSMK 399 (643)
Q Consensus 325 A~~~~~~m~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g----~~~~a~~~~~~~~ 399 (643)
|.+.|++.. ..++.++..+...|...+++++|++.|++..+.| +...+..+...|.. + +.++|.++|+...
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 444555443 3467788888888888999999999999988865 45666667777777 6 8999999999987
Q ss_pred HhcCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHhCC-CCCC---HHHHHHHHHHHHH----cCCHHHHHHHHHHHH
Q 045672 400 KFYGIDPGREHYSCMIDLLGR----AGKLQEAVKLIHEMP-YEPD---AVTWRALLGACKV----HRNTDLAICAAKKIL 467 (643)
Q Consensus 400 ~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~-~~p~---~~~~~~ll~~~~~----~g~~~~a~~~~~~~~ 467 (643)
+. .+...+..|..+|.. .+++++|.+.|++.- ..|+ ...+..|...|.. .+++++|+..++++.
T Consensus 81 ~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 EA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 62 356677788888877 889999999998873 3342 6788888888887 789999999999999
Q ss_pred hcCCCCcchHHHHHHHHHcc-C-----ChhHHHHHHHHHHhCCC
Q 045672 468 NLDPQDPGTYILLSNIYANS-Q-----KWDEVAEVRKTMRARGI 505 (643)
Q Consensus 468 ~~~p~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~m~~~g~ 505 (643)
+. |.++.++..|+.+|... | ++++|.+.+++..+.|.
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 88 66777999999999764 3 89999999999988764
No 100
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.76 E-value=8.6e-08 Score=103.45 Aligned_cols=160 Identities=9% Similarity=0.011 Sum_probs=124.3
Q ss_pred cCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 045672 319 CGSLEDAMSVFSRMIQ---KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHF 395 (643)
Q Consensus 319 ~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 395 (643)
.|++++|...|++..+ .+...|..+...|.+.|++++|++.|++..+.. +.+...+..+..++...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4788999999998854 356789999999999999999999999998753 334778888999999999999999999
Q ss_pred HHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhcC
Q 045672 396 KSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVH---RNTDLAICAAKKILNLD 470 (643)
Q Consensus 396 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~ 470 (643)
++..+. .+.+...+..+...|.+.|++++|.+.+++. ...| +...+..+...+... |++++|...++++++.+
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 999874 2345778999999999999999999999887 3334 567888888999999 99999999999999999
Q ss_pred CCCcchHHHHH
Q 045672 471 PQDPGTYILLS 481 (643)
Q Consensus 471 p~~~~~~~~l~ 481 (643)
|++...+..++
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 99888887776
No 101
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.74 E-value=2.9e-07 Score=90.62 Aligned_cols=220 Identities=12% Similarity=0.026 Sum_probs=153.7
Q ss_pred CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhhcCCchhHHhHHHHHHHhcCCHHHHHHHHh
Q 045672 251 NSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFS 330 (643)
Q Consensus 251 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~ 330 (643)
.|++++|.+++++..+.. +.. + +...++++.|...+. .....|...|++++|...|.
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~---~------~~~~~~~~~A~~~~~-------------~a~~~~~~~g~~~~A~~~~~ 60 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS---F------MKWKPDYDSAASEYA-------------KAAVAFKNAKQLEQAKDAYL 60 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC---S------SSCSCCHHHHHHHHH-------------HHHHHHHHTTCHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc---c------cCCCCCHHHHHHHHH-------------HHHHHHHHcCCHHHHHHHHH
Confidence 477889999998877642 111 0 111466777666654 34567778899999888887
Q ss_pred hcCCC-----C----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCC--HHHHHHHHHHHhccCCHHHHHHHHH
Q 045672 331 RMIQK-----D----VISWSTMISGLAQNGYSQEALKLFESMKVSR---IKPN--YITIVGVLFACSHAGFVEDGWNHFK 396 (643)
Q Consensus 331 ~m~~~-----~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~ 396 (643)
+..+- + ..+|+.+...|...|++++|+..|++....- -.|. ..++..+...|.. |++++|...|+
T Consensus 61 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~ 139 (307)
T 2ifu_A 61 QEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQ 139 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 76321 1 3478888899999999999999998875421 1222 3567778888888 99999999999
Q ss_pred HhHHhcCCCC----ChHHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHH
Q 045672 397 SMKKFYGIDP----GREHYSCMIDLLGRAGKLQEAVKLIHEM----PYEPD----AVTWRALLGACKVHRNTDLAICAAK 464 (643)
Q Consensus 397 ~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~ 464 (643)
+..+.+.-.. ...++..+...|.+.|++++|.+.|++. +..++ ...+..+...+...|++++|...++
T Consensus 140 ~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~ 219 (307)
T 2ifu_A 140 QAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVR 219 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 8876321111 1457888899999999999999999876 11122 2255666667778899999999999
Q ss_pred HHHhcCCCCcch-----HHHHHHHHHccCChhHHHHH
Q 045672 465 KILNLDPQDPGT-----YILLSNIYANSQKWDEVAEV 496 (643)
Q Consensus 465 ~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~a~~~ 496 (643)
+++ +.|....+ ...++.+| ..|+.+.+.++
T Consensus 220 ~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 220 ESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 999 88875432 44555555 56776666553
No 102
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.73 E-value=1.2e-07 Score=84.94 Aligned_cols=76 Identities=11% Similarity=0.004 Sum_probs=59.4
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--cchHHHHHHHHHccCChhHHHHHHHHHHh
Q 045672 427 AVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQD--PGTYILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 427 A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
|.+.+++. ...| +...+..+...+...|++++|+..++++++.+|+. +..+..++.+|...|+.++|...+++...
T Consensus 93 a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 93 ELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 34444443 2234 46778888888899999999999999999998864 55889999999999999999998887653
No 103
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.70 E-value=4.3e-07 Score=99.87 Aligned_cols=188 Identities=13% Similarity=0.048 Sum_probs=145.1
Q ss_pred hcCChhHhHHHHHHHHh--------h-cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcC
Q 045672 284 TGLALLELGTQVHVHVL--------K-YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ---KDVISWSTMISGLAQNG 351 (643)
Q Consensus 284 ~~~~~~~~a~~i~~~~~--------~-~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g 351 (643)
...|++++|.+.++.+. + .+.+...+..+...|.+.|++++|...|++..+ .+...|..+..+|.+.|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g 481 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG 481 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC
Confidence 66778888888888887 5 455667788889999999999999999998853 36778999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 045672 352 YSQEALKLFESMKVSRIKP-NYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKL 430 (643)
Q Consensus 352 ~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 430 (643)
++++|++.|++..+. .| +...+..+..++.+.|++++ .+.|+++.+. -+.+...|..+..+|.+.|++++|.+.
T Consensus 482 ~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 482 DYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp CHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999885 45 46778888899999999999 9999999873 234677899999999999999999999
Q ss_pred HHhC-CCCCCH-HHHHHHHHHHHHcCC-----HHHHHHHHHHHHhcCCCCcch
Q 045672 431 IHEM-PYEPDA-VTWRALLGACKVHRN-----TDLAICAAKKILNLDPQDPGT 476 (643)
Q Consensus 431 ~~~m-~~~p~~-~~~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~p~~~~~ 476 (643)
|+++ ...|+. ..|..+..++...++ .+...++.+.+..+.+.++..
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~ 609 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRV 609 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTH
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHH
Confidence 9998 566764 467777777655554 344444455555555554443
No 104
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.69 E-value=2.8e-07 Score=99.45 Aligned_cols=146 Identities=10% Similarity=-0.038 Sum_probs=93.1
Q ss_pred CChhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHH
Q 045672 286 LALLELGTQVHVHVLK-YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ---KDVISWSTMISGLAQNGYSQEALKLFE 361 (643)
Q Consensus 286 ~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~ 361 (643)
.|++++|...++.+.+ .+.+...+..+...|.+.|++++|...|++..+ .+...|..+...|...|++++|++.|+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3567777777777777 455567777778888888888888888877643 245677777778888888888888888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhc---CCHHHHHHHHHhC
Q 045672 362 SMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRA---GKLQEAVKLIHEM 434 (643)
Q Consensus 362 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m 434 (643)
+..+.. +.+...+..+..++...|++++|.+.+++..+. .+.+...+..+...+... |++++|.+.+++.
T Consensus 82 ~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 82 QASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 777642 233567777777778888888888888877763 233466777777777777 8888888777765
No 105
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.69 E-value=3.5e-08 Score=85.76 Aligned_cols=121 Identities=15% Similarity=0.051 Sum_probs=100.5
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC
Q 045672 379 LFACSHAGFVEDGWNHFKSMKKFYGIDP-GREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRN 455 (643)
Q Consensus 379 l~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~ 455 (643)
...+...|++++|+..+..... ..| +...+..+...|.+.|++++|.+.|++. ...| +..+|..+...+...|+
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc
Confidence 3455677889999998887754 234 3445677899999999999999999987 4445 57789999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHH-HHHHHh
Q 045672 456 TDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEV-RKTMRA 502 (643)
Q Consensus 456 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~-~~~m~~ 502 (643)
+++|+..++++++++|+++.++..++.+|.+.|++++|.+. +++..+
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999887765 477665
No 106
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.68 E-value=6e-06 Score=86.68 Aligned_cols=79 Identities=9% Similarity=-0.024 Sum_probs=43.2
Q ss_pred CCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCC-hhHHHHHHccCCC------CCcchHHHHHHHHH----hCCCh
Q 045672 88 HAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL-LEEAQVLFDQMPE------RNVVSWTTMISAYC----DAKMN 156 (643)
Q Consensus 88 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~f~~m~~------~~~~~~~~li~~~~----~~g~~ 156 (643)
++++.+.++|+..+.. .|+...|...+..-.+.++ .+....+|+.... .+...|...+..+. .+|+.
T Consensus 28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 5677777777777663 3566666666655544442 2334444443221 24455666555433 23456
Q ss_pred hHHHHHHHHHHH
Q 045672 157 DKALELLIFMLR 168 (643)
Q Consensus 157 ~~A~~~~~~m~~ 168 (643)
+.+..+|++.+.
T Consensus 106 ~~vR~iy~rAL~ 117 (493)
T 2uy1_A 106 EKIRNGYMRALQ 117 (493)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 677777877775
No 107
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.68 E-value=4.7e-07 Score=83.46 Aligned_cols=126 Identities=8% Similarity=0.010 Sum_probs=92.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhc
Q 045672 343 MISGLAQNGYSQEALKLFESMKVSRIKP-NYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRA 421 (643)
Q Consensus 343 li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 421 (643)
+...|.+.|++++|+..|++..+. .| +...+..+...+...|++++|...|++..+. -+.+...+..+...|...
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQK--APNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHH
Confidence 788888899999999999988874 44 4677888888888999999999999988873 233567788888877665
Q ss_pred CC--HHHHHHHHHhCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 045672 422 GK--LQEAVKLIHEMPYEPDAV--TWRALLGACKVHRNTDLAICAAKKILNLDPQD 473 (643)
Q Consensus 422 g~--~~~A~~~~~~m~~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 473 (643)
|. .+++...++... .|+.. .|..+..++...|++++|+..+++++++.|++
T Consensus 136 ~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 136 AEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred hHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 54 345566666653 34433 34444555667889999999999999999863
No 108
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.66 E-value=1.7e-07 Score=81.15 Aligned_cols=102 Identities=10% Similarity=-0.013 Sum_probs=88.4
Q ss_pred CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHH
Q 045672 403 GIDP-GREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYIL 479 (643)
Q Consensus 403 ~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 479 (643)
.+.| +...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..|+++++++|+++.+|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 3444 3556777888889999999999999887 3344 67789999999999999999999999999999999999999
Q ss_pred HHHHHHccCChhHHHHHHHHHHhCC
Q 045672 480 LSNIYANSQKWDEVAEVRKTMRARG 504 (643)
Q Consensus 480 l~~~~~~~g~~~~a~~~~~~m~~~g 504 (643)
++.+|...|++++|.+.+++..+..
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999998743
No 109
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.62 E-value=6.6e-07 Score=83.60 Aligned_cols=181 Identities=12% Similarity=-0.023 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHhcCChhHhHHHHHHHHhhc-CCc---hhHHhHHHHHHHhcCCHHHHHHHHhhcCC--CC-h---hhHHH
Q 045672 273 QSTLTSVLRACTGLALLELGTQVHVHVLKY-DHD---LILNNALLDMYCKCGSLEDAMSVFSRMIQ--KD-V---ISWST 342 (643)
Q Consensus 273 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-~~~---~~~~~~Li~~y~~~g~~~~A~~~~~~m~~--~~-~---~~~~~ 342 (643)
...+-.....+...|+++.|...+..+.+. +.+ ...+..+...|.+.|++++|...|++..+ |+ . ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 344555667788899999999999999983 333 35677889999999999999999999843 22 2 14555
Q ss_pred HHHHHHh------------------cCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcC
Q 045672 343 MISGLAQ------------------NGYSQEALKLFESMKVSRIKPNYI-TIVGVLFACSHAGFVEDGWNHFKSMKKFYG 403 (643)
Q Consensus 343 li~~~~~------------------~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 403 (643)
+..++.. .|+.++|+..|+++++. .|+.. ....... ...+...+.
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----------l~~~~~~~~---- 147 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----------LVFLKDRLA---- 147 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----------HHHHHHHHH----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----------HHHHHHHHH----
Confidence 5555554 57899999999999874 46533 2211110 001111111
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Q 045672 404 IDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEPDA----VTWRALLGACKVHRNTDLAICAAKKILNLDPQDP 474 (643)
Q Consensus 404 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 474 (643)
.....+...|.+.|++++|...|+++ ...|+. ..+..+..++.+.|+.++|+..++++....|++.
T Consensus 148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 12235677889999999999999887 223432 4677888899999999999999999998888764
No 110
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.62 E-value=4e-07 Score=76.26 Aligned_cols=108 Identities=14% Similarity=-0.003 Sum_probs=64.0
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 045672 374 TIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACK 451 (643)
Q Consensus 374 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~ 451 (643)
.+......+.+.|++++|++.|++..+. .+.+...|..+..+|.+.|++++|++.+++. ...| +...|..+..++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 3444455555566666666666555542 2234455555566666666666666665554 2223 3456666666677
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 045672 452 VHRNTDLAICAAKKILNLDPQDPGTYILLSNI 483 (643)
Q Consensus 452 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 483 (643)
..|++++|+..++++++++|+++.++..|.++
T Consensus 93 ~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 77777777777777777777776666655543
No 111
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.61 E-value=4.9e-06 Score=81.17 Aligned_cols=160 Identities=9% Similarity=-0.026 Sum_probs=110.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHH----HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----hHHHHH
Q 045672 343 MISGLAQNGYSQEALKLFESMKVSR-IKPNYI----TIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPG----REHYSC 413 (643)
Q Consensus 343 li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~ 413 (643)
.+..+...|++++|..++++..... ..|+.. .+..+...+...|++++|...|+.+.+...-.++ ...++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3556677777777777777776532 122211 2223555566667888888888777762111222 235777
Q ss_pred HHHHHHhcCCHHHHHHHHHhCC-------C-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------cchHH
Q 045672 414 MIDLLGRAGKLQEAVKLIHEMP-------Y-EPD-AVTWRALLGACKVHRNTDLAICAAKKILNLDPQD------PGTYI 478 (643)
Q Consensus 414 li~~~~~~g~~~~A~~~~~~m~-------~-~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 478 (643)
+...|...|++++|.+.++++- . .+. ..++..+...|...|++++|+..+++++++.+.. +.+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 7888888888888887776651 1 122 2367788888999999999999999998765332 56899
Q ss_pred HHHHHHHccCC-hhHHHHHHHHHHh
Q 045672 479 LLSNIYANSQK-WDEVAEVRKTMRA 502 (643)
Q Consensus 479 ~l~~~~~~~g~-~~~a~~~~~~m~~ 502 (643)
.++.+|.+.|+ +++|.+.+++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999995 6999999988763
No 112
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.61 E-value=8.7e-07 Score=81.73 Aligned_cols=123 Identities=15% Similarity=0.062 Sum_probs=91.6
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcC
Q 045672 377 GVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYE-PDAVTWRALLGACKVHR 454 (643)
Q Consensus 377 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g 454 (643)
.+...+...|++++|...|+.. +.|+...+..+...|.+.|++++|.+.+++. ... .+...|..+...+...|
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHH-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcc
Confidence 3444555666666666666544 2345566666666777777777777766655 222 35567788888888899
Q ss_pred CHHHHHHHHHHHHhcCCCCc----------------chHHHHHHHHHccCChhHHHHHHHHHHhCC
Q 045672 455 NTDLAICAAKKILNLDPQDP----------------GTYILLSNIYANSQKWDEVAEVRKTMRARG 504 (643)
Q Consensus 455 ~~~~a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 504 (643)
++++|+..++++++..|.+. .++..++.+|...|++++|.+.+++..+..
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 99999999999999888776 889999999999999999999999998754
No 113
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.60 E-value=5.5e-07 Score=80.46 Aligned_cols=156 Identities=8% Similarity=-0.016 Sum_probs=109.9
Q ss_pred HhHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-Hhc
Q 045672 309 NNALLDMYCKCGSLEDAMSVFSRMIQ---KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFA-CSH 384 (643)
Q Consensus 309 ~~~Li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a-~~~ 384 (643)
...+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++.... .|+.......... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHh
Confidence 34556677788888888888888754 25567888888888888888888888887654 3343322221111 112
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHHcCCHHHHH
Q 045672 385 AGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEPD---AVTWRALLGACKVHRNTDLAI 460 (643)
Q Consensus 385 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~---~~~~~~ll~~~~~~g~~~~a~ 460 (643)
.+...+|...++...+. .+.+...+..+...|...|++++|.+.|+++ ...|+ ...+..+...+...|+.++|.
T Consensus 87 ~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 87 QAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 22233467777777763 2335778888888999999999999988876 44453 557888888899999999999
Q ss_pred HHHHHHHh
Q 045672 461 CAAKKILN 468 (643)
Q Consensus 461 ~~~~~~~~ 468 (643)
..|++.+.
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99888764
No 114
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.59 E-value=1.4e-07 Score=81.64 Aligned_cols=97 Identities=12% Similarity=0.037 Sum_probs=85.2
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 045672 407 GREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIY 484 (643)
Q Consensus 407 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 484 (643)
+...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++.++..++.+|
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 4556777888899999999999999877 3334 6778888888999999999999999999999999999999999999
Q ss_pred HccCChhHHHHHHHHHHhC
Q 045672 485 ANSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 485 ~~~g~~~~a~~~~~~m~~~ 503 (643)
...|++++|.+.+++..+.
T Consensus 100 ~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999999988764
No 115
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.59 E-value=1.8e-06 Score=79.51 Aligned_cols=144 Identities=8% Similarity=-0.124 Sum_probs=91.7
Q ss_pred hHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH
Q 045672 310 NALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVE 389 (643)
Q Consensus 310 ~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 389 (643)
..+...|...|++++|...|++...++...|..+...|...|++++|++.|++..... +.+...+..+..++...|+++
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~ 88 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYD 88 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHH
Confidence 3455566677777777777777766666677777777777777777777777766542 233555666666666677777
Q ss_pred HHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 045672 390 DGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPD-AVTWRALLGACKVHRNTDLAICAAKKILN 468 (643)
Q Consensus 390 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 468 (643)
+|...|+...+...-.+... +...| +...|+ ...|..+...+...|++++|...++++++
T Consensus 89 ~A~~~~~~al~~~~~~~~~~--------~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 89 LAIKDLKEALIQLRGNQLID--------YKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp HHHHHHHHHHHTTTTCSEEE--------CGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCccHHH--------HHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 77776666655211000000 00000 012232 35677778888899999999999999999
Q ss_pred cCCCC
Q 045672 469 LDPQD 473 (643)
Q Consensus 469 ~~p~~ 473 (643)
..|++
T Consensus 150 ~~p~~ 154 (213)
T 1hh8_A 150 MKSEP 154 (213)
T ss_dssp TCCSG
T ss_pred cCccc
Confidence 99876
No 116
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.58 E-value=4.6e-06 Score=87.55 Aligned_cols=368 Identities=9% Similarity=-0.054 Sum_probs=179.4
Q ss_pred cC-CHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCChhHHHHHHccCCC--CCcchHHHHHHHHHhCCC-hhHHHHH
Q 045672 87 RH-AVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPE--RNVVSWTTMISAYCDAKM-NDKALEL 162 (643)
Q Consensus 87 ~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~-~~~A~~~ 162 (643)
.| ++..|+.+++.++..- |. |+.+.+..+|++... |++..|...+....+.+. .+....+
T Consensus 7 ~~~~i~~aR~vyer~l~~~--P~--------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~ 70 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRLY--MS--------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEV 70 (493)
T ss_dssp -----CCHHHHHHHHHHHH--HT--------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHH
T ss_pred cCcchHHHHHHHHHHHHHC--CC--------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHH
Confidence 45 3777788887776642 22 889999999987765 788888888877766653 3445666
Q ss_pred HHHHHHC-CCCC-ChhhHHHHHHHHhc----hhhHH---HHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhC
Q 045672 163 LIFMLRE-GVRP-NMFTYSAVLRACDS----LIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233 (643)
Q Consensus 163 ~~~m~~~-g~~p-~~~t~~~ll~a~~~----~~~~~---~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~ 233 (643)
|+..+.. |..| +...|...+.-+.. .+..+ .+++..++.....-..+|......-. ......+.++
T Consensus 71 fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~-~~~~~~~~~~---- 145 (493)
T 2uy1_A 71 YEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFEL-ELNKITGKKI---- 145 (493)
T ss_dssp HHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHH-HHCHHHHHHH----
T ss_pred HHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHH-HhccccHHHH----
Confidence 6665543 4333 33444444433221 12222 34444443111100111111111000 0001111111
Q ss_pred CCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcC--C-----hhHhHHHHHHHHhh-cCCc
Q 045672 234 PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGL--A-----LLELGTQVHVHVLK-YDHD 305 (643)
Q Consensus 234 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~--~-----~~~~a~~i~~~~~~-~~~~ 305 (643)
+.... +.+..|..+++.+...-...+...|...+.--... + ..+.+..+++.++. .+..
T Consensus 146 -----------~~~~~--~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~ 212 (493)
T 2uy1_A 146 -----------VGDTL--PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYA 212 (493)
T ss_dssp -----------HHHHH--HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTC
T ss_pred -----------HHHHh--HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCC
Confidence 11110 12223333333332210001122333333222111 0 12345566666666 5566
Q ss_pred hhHHhHHHHHHHhcCCHHHHHHHHhhcCC-CCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHHC---------CCCC---C
Q 045672 306 LILNNALLDMYCKCGSLEDAMSVFSRMIQ-KDV-ISWSTMISGLAQNGYSQEALKLFESMKVS---------RIKP---N 371 (643)
Q Consensus 306 ~~~~~~Li~~y~~~g~~~~A~~~~~~m~~-~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~---------g~~p---~ 371 (643)
..+|-..+..+.+.|+.+.|..+|++... |+. ..|. .|+...+.++. ++.+.+. +..+ .
T Consensus 213 ~~lW~~ya~~~~~~~~~~~ar~i~erAi~~P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~ 285 (493)
T 2uy1_A 213 EEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKEL 285 (493)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhccccc
Confidence 66777777777777777887777776532 221 1222 12221111111 2222111 0001 1
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcC-CHHHHHHHHHhC--CCCCCHHHHHHHHH
Q 045672 372 YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAG-KLQEAVKLIHEM--PYEPDAVTWRALLG 448 (643)
Q Consensus 372 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m--~~~p~~~~~~~ll~ 448 (643)
...|...+....+.+..+.|..+|+.+ +. . ..+...|...+..-.+.+ +.+.|.++|+.. ....+...|...+.
T Consensus 286 ~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid 362 (493)
T 2uy1_A 286 DLLRINHLNYVLKKRGLELFRKLFIEL-GN-E-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFL 362 (493)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-S-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-C-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 234555555555667788888888877 32 1 123344443333333333 578888888765 12123445666666
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHh
Q 045672 449 ACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 449 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
-....|+.+.|..+++++ +.....+...+..-...|+.+.+.++++++.+
T Consensus 363 ~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 363 FLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 667788888888888886 23445666666666777888888887777663
No 117
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.58 E-value=1.7e-06 Score=84.07 Aligned_cols=159 Identities=7% Similarity=-0.007 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHhcCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCC--CChhhH-HHHHHHHH
Q 045672 273 QSTLTSVLRACTGLALLELGTQVHVHVLK-YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ--KDVISW-STMISGLA 348 (643)
Q Consensus 273 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~--~~~~~~-~~li~~~~ 348 (643)
...+..+...+...|+++.|...++.+.+ .+.+...+..|...|.+.|++++|...|+++.. |+.... ......+.
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~ 196 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELL 196 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHH
Confidence 33444444555555666666666666655 444455566666666667777777777666643 222211 11122244
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHH
Q 045672 349 QNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAV 428 (643)
Q Consensus 349 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 428 (643)
+.++.++|+..|++..... +.+...+..+...+...|++++|...|..+.+...-..+...+..++..|...|+.++|.
T Consensus 197 ~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~ 275 (287)
T 3qou_A 197 XQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALA 275 (287)
T ss_dssp HHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHH
T ss_pred hhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHH
Confidence 5555555666666655532 223455555566666666666666666666553111111344555555555555555555
Q ss_pred HHHH
Q 045672 429 KLIH 432 (643)
Q Consensus 429 ~~~~ 432 (643)
..++
T Consensus 276 ~~~r 279 (287)
T 3qou_A 276 SXYR 279 (287)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 118
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.57 E-value=3.8e-05 Score=74.59 Aligned_cols=222 Identities=8% Similarity=0.008 Sum_probs=115.9
Q ss_pred CChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhcCC--hhHhHHHHHHHHhh-cCCchhHHhHHHHHH----Hhc---C
Q 045672 252 SDVDEALNLYKRMKRAGFAADQS-TLTSVLRACTGLA--LLELGTQVHVHVLK-YDHDLILNNALLDMY----CKC---G 320 (643)
Q Consensus 252 g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~~--~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y----~~~---g 320 (643)
...++|++++..++.. .|+.. .++.--.++...+ +++++...+..+.. .+.+..+|+.--..+ .+. +
T Consensus 47 e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 47 EYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccC
Confidence 3345677777776663 34333 3444444444444 55555555555555 333444444332222 333 5
Q ss_pred CHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC------HH
Q 045672 321 SLEDAMSVFSRMIQ---KDVISWSTMISGLAQNGYSQ--EALKLFESMKVSRIKPNYITIVGVLFACSHAGF------VE 389 (643)
Q Consensus 321 ~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~--~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~------~~ 389 (643)
+++++...++.+.+ +|..+|+--.-.+.+.|.++ ++++.++++.+.. .-|...|..-.....+.+. ++
T Consensus 125 ~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 125 DPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp CTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHH
Confidence 66666666666633 34455655555556666665 6777777776643 2344455544444444444 56
Q ss_pred HHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHH-HHHHHHhC-CC----CCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 045672 390 DGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQE-AVKLIHEM-PY----EPDAVTWRALLGACKVHRNTDLAICAA 463 (643)
Q Consensus 390 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m-~~----~p~~~~~~~ll~~~~~~g~~~~a~~~~ 463 (643)
++++.++.+... .+-|...|+-+-..+.+.|+..+ +.++..+. .. ..+...+..+...+.+.|+.++|.+++
T Consensus 204 eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~ 281 (306)
T 3dra_A 204 EELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY 281 (306)
T ss_dssp HHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 666666665552 23345555555555555555333 33344443 11 124455555555555666666666666
Q ss_pred HHHHh-cCCCCcchHH
Q 045672 464 KKILN-LDPQDPGTYI 478 (643)
Q Consensus 464 ~~~~~-~~p~~~~~~~ 478 (643)
+.+.+ .+|.+...|.
T Consensus 282 ~~l~~~~Dpir~~yW~ 297 (306)
T 3dra_A 282 DLLKSKYNPIRSNFWD 297 (306)
T ss_dssp HHHHHTTCGGGHHHHH
T ss_pred HHHHhccChHHHHHHH
Confidence 66654 4555544443
No 119
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.57 E-value=9.8e-06 Score=78.69 Aligned_cols=211 Identities=12% Similarity=0.102 Sum_probs=165.2
Q ss_pred hHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcC--CHHHHHHHHhhcCC---CChhhHHHHHHHH----Hhc---CCHHH
Q 045672 289 LELGTQVHVHVLK-YDHDLILNNALLDMYCKCG--SLEDAMSVFSRMIQ---KDVISWSTMISGL----AQN---GYSQE 355 (643)
Q Consensus 289 ~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g--~~~~A~~~~~~m~~---~~~~~~~~li~~~----~~~---g~~~~ 355 (643)
.++|......++. .+.+..+|+.--..+...| +++++.+.++.+.. ++...|+.--..+ ... +++++
T Consensus 49 s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~ 128 (306)
T 3dra_A 49 SERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYR 128 (306)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHH
T ss_pred CHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHH
Confidence 3577888888888 5556677888888888888 99999999998854 3555777655555 555 78999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH--HHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCC------HHHH
Q 045672 356 ALKLFESMKVSRIKPNYITIVGVLFACSHAGFVE--DGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGK------LQEA 427 (643)
Q Consensus 356 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~--~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~------~~~A 427 (643)
++++++++.+.. +-|...|..-...+.+.|.++ +++++++.+.+. -+-+...|+.-..++.+.|+ ++++
T Consensus 129 EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~~eE 205 (306)
T 3dra_A 129 EFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNTIDEE 205 (306)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhhHHHH
Confidence 999999999853 346777777777777788887 999999999884 34466677666666666676 8999
Q ss_pred HHHHHhC-CCC-CCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhcC---CCCcchHHHHHHHHHccCChhHHHHHHHHHH
Q 045672 428 VKLIHEM-PYE-PDAVTWRALLGACKVHRNT-DLAICAAKKILNLD---PQDPGTYILLSNIYANSQKWDEVAEVRKTMR 501 (643)
Q Consensus 428 ~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 501 (643)
++.++++ ... -|...|+-+-..+...|+. +.....++++.+++ |.++.++..++.+|.+.|+.++|.++++.+.
T Consensus 206 l~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 206 LNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLK 285 (306)
T ss_dssp HHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 9988876 333 4788899888888888874 44566778887776 8888999999999999999999999999987
Q ss_pred h
Q 045672 502 A 502 (643)
Q Consensus 502 ~ 502 (643)
+
T Consensus 286 ~ 286 (306)
T 3dra_A 286 S 286 (306)
T ss_dssp H
T ss_pred h
Confidence 5
No 120
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.56 E-value=2e-06 Score=79.11 Aligned_cols=182 Identities=9% Similarity=0.016 Sum_probs=105.8
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhcCChhHhHHHHHHHHhhcCCchhHHhHHHHHHHhcCC
Q 045672 243 SIIGGFAQNSDVDEALNLYKRMKRAGFAADQS-TLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGS 321 (643)
Q Consensus 243 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~Li~~y~~~g~ 321 (643)
.....+.+.|++++|+..|++..+. .|+.. .+.. . .... . ........+.+...|.+.|+
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~-~-~~~~--~-------------~~~~~~~~~~lg~~~~~~g~ 69 (208)
T 3urz_A 9 QKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYW-T-NVDK--N-------------SEISSKLATELALAYKKNRN 69 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHH-H-HSCT--T-------------SHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHH-h-hhcc--h-------------hhhhHHHHHHHHHHHHHCCC
Confidence 3445566778888888888777764 34322 1111 0 0000 0 00111223446777778888
Q ss_pred HHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCC--HHHHHHHH
Q 045672 322 LEDAMSVFSRMIQ---KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPN-YITIVGVLFACSHAGF--VEDGWNHF 395 (643)
Q Consensus 322 ~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~--~~~a~~~~ 395 (643)
+++|...|++..+ .+...|..+...|...|++++|+..|++..+. .|+ ..++..+..++...|. .+.+...+
T Consensus 70 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~ 147 (208)
T 3urz_A 70 YDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQEKKKLETDY 147 (208)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 8888888877632 35667777888888888888888888887774 444 5566666666655443 33344444
Q ss_pred HHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 045672 396 KSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEPDAVTWRALLG 448 (643)
Q Consensus 396 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~ 448 (643)
..... ..|....+..+..++...|++++|...|++. ...|+......+..
T Consensus 148 ~~~~~---~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~~ 198 (208)
T 3urz_A 148 KKLSS---PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDK 198 (208)
T ss_dssp C---C---CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred HHHhC---CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 44321 1222223334455566678888888888776 56677665554443
No 121
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.55 E-value=1.2e-06 Score=76.89 Aligned_cols=126 Identities=7% Similarity=-0.011 Sum_probs=87.3
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHH
Q 045672 375 IVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYE-PDAVTWRALLGACKV 452 (643)
Q Consensus 375 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~ 452 (643)
+..+...+...|++++|...|+...+. .+.+...+..+...+...|++++|.+.+++. ... .+...|..+...+..
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 444444555566666666666665542 2234556666666677777777777766655 222 345677788888889
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcchHHHHHH--HHHccCChhHHHHHHHHHHh
Q 045672 453 HRNTDLAICAAKKILNLDPQDPGTYILLSN--IYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 453 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~--~~~~~g~~~~a~~~~~~m~~ 502 (643)
.|++++|...++++++..|.+...+..+.. .+...|++++|.+.++...+
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999999999988877754444 47888999999999887653
No 122
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.55 E-value=1.3e-06 Score=72.15 Aligned_cols=114 Identities=18% Similarity=0.154 Sum_probs=78.0
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHH
Q 045672 373 ITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-P-YEPDAVTWRALLGAC 450 (643)
Q Consensus 373 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~ 450 (643)
..+..+...+...|++++|.+.++.+.+. .+.+...+..+...+.+.|++++|...++++ . ...+..+|..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 34455555556666666666666666552 1234555666666677777777777766665 1 123566777788888
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccC
Q 045672 451 KVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQ 488 (643)
Q Consensus 451 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 488 (643)
...|++++|...++++++..|+++..+..++.++...|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 88899999999999999999988888888888776544
No 123
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.54 E-value=7e-07 Score=74.72 Aligned_cols=100 Identities=13% Similarity=0.158 Sum_probs=88.7
Q ss_pred CCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 045672 404 IDPG-REHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILL 480 (643)
Q Consensus 404 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 480 (643)
+.|+ ...+......|.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|+++.+|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 4453 346777888999999999999999987 3344 677899999999999999999999999999999999999999
Q ss_pred HHHHHccCChhHHHHHHHHHHhC
Q 045672 481 SNIYANSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 481 ~~~~~~~g~~~~a~~~~~~m~~~ 503 (643)
+.+|...|++++|.+.+++..+.
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999999998863
No 124
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.54 E-value=3e-06 Score=82.70 Aligned_cols=164 Identities=9% Similarity=-0.048 Sum_probs=113.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-H----HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCC--CCC--hH
Q 045672 339 SWSTMISGLAQNGYSQEALKLFESMKVSRIKPN-Y----ITIVGVLFACSHAGFVEDGWNHFKSMKKFYGI--DPG--RE 409 (643)
Q Consensus 339 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~p~--~~ 409 (643)
.+...+..+...|++++|++.+++..+...... . ..+..+...+...|++++|...++...+...- .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344456667777888888888877766432111 1 12233445566777888888888777642111 111 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------Cc
Q 045672 410 HYSCMIDLLGRAGKLQEAVKLIHEM----PYEPD-----AVTWRALLGACKVHRNTDLAICAAKKILNLDPQ------DP 474 (643)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~ 474 (643)
.|+.+...|...|++++|.+.++++ ...|+ ..++..+...|...|++++|+..+++++++.++ -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7778888888888888888888765 11122 247778888899999999999999999876432 14
Q ss_pred chHHHHHHHHHccCChhHH-HHHHHHHHh
Q 045672 475 GTYILLSNIYANSQKWDEV-AEVRKTMRA 502 (643)
Q Consensus 475 ~~~~~l~~~~~~~g~~~~a-~~~~~~m~~ 502 (643)
.+|..++.+|.+.|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6788999999999999999 777777653
No 125
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.51 E-value=2.2e-07 Score=90.14 Aligned_cols=190 Identities=8% Similarity=-0.037 Sum_probs=124.7
Q ss_pred hhHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 045672 306 LILNNALLDMYCKCGSLEDAMSVFSRMIQ---KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKP-NYITIVGVLFA 381 (643)
Q Consensus 306 ~~~~~~Li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a 381 (643)
...+..+...|.+.|++++|...|++... .+...|..+...|.+.|++++|+..+++..+. .| +...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 34456677777888888888888877632 36677888888888888888888888888764 34 45677777888
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCCh-HHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 045672 382 CSHAGFVEDGWNHFKSMKKFYGIDPGR-EHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAI 460 (643)
Q Consensus 382 ~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~ 460 (643)
+...|++++|...|....+. .|+. ..+...+....+..+...... .......++......+ ..+ ..|+.++|+
T Consensus 82 ~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l-~~~~~~~A~ 155 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRL-IAAEREREL 155 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHH-HHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHH-HHHHHHHHH
Confidence 88888888888888877653 1211 111111111111111111111 2222223343333333 333 368899999
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHcc-CChhHHHHHHHHHHhC
Q 045672 461 CAAKKILNLDPQDPGTYILLSNIYANS-QKWDEVAEVRKTMRAR 503 (643)
Q Consensus 461 ~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~ 503 (643)
+.++++++++|++......+...+.+. +.+++|.++|+++.+.
T Consensus 156 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 156 EECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999999998877777777777776 7899999999988753
No 126
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.51 E-value=1.5e-06 Score=72.59 Aligned_cols=117 Identities=12% Similarity=-0.002 Sum_probs=82.5
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 045672 373 ITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGAC 450 (643)
Q Consensus 373 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~ 450 (643)
..+..+...+...|++++|...|+...+. .+.+...+..+...+...|++++|.+.+++. ...| +...|..+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 34445555556666666666666666552 2234556666666677777777777766655 2223 456777778888
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChh
Q 045672 451 KVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWD 491 (643)
Q Consensus 451 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 491 (643)
...|++++|...++++++..|+++..+..++.++...|+++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 89999999999999999999998888999999998888753
No 127
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.50 E-value=1.5e-06 Score=74.40 Aligned_cols=96 Identities=16% Similarity=0.024 Sum_probs=83.0
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 045672 408 REHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYA 485 (643)
Q Consensus 408 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 485 (643)
...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 445666777888899999999998876 3334 67788888888999999999999999999999999999999999999
Q ss_pred ccCChhHHHHHHHHHHhC
Q 045672 486 NSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 486 ~~g~~~~a~~~~~~m~~~ 503 (643)
..|++++|.+.+++..+.
T Consensus 98 ~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999988764
No 128
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.49 E-value=1.5e-06 Score=72.93 Aligned_cols=116 Identities=15% Similarity=0.046 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHH
Q 045672 372 YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYE-PDAVTWRALLGA 449 (643)
Q Consensus 372 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~ 449 (643)
...+..+...+...|++++|...|+...+. .+.+...+..+...|...|++++|.+.+++. ... .+...|..+...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 344445555555555555555555555441 1224455555666666666666666666554 112 245677777778
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCC
Q 045672 450 CKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQK 489 (643)
Q Consensus 450 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 489 (643)
+...|++++|+..++++++..|.+...+..++.++...|+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 8888888889999999888888888888888888876653
No 129
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.48 E-value=8.4e-07 Score=87.33 Aligned_cols=195 Identities=9% Similarity=-0.011 Sum_probs=148.2
Q ss_pred CChhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045672 286 LALLELGTQVHVHVLK-YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMK 364 (643)
Q Consensus 286 ~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 364 (643)
.|++++|.+++..+.+ .+.. .+...++++.|...|... ...|...|++++|++.|.+..
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~---------~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al 63 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTS---------FMKWKPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYLQEA 63 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCC---------SSSCSCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcccc---------ccCCCCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHH
Confidence 5778889999988887 3321 111158888888877653 667889999999999998875
Q ss_pred HC----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCC--C--ChHHHHHHHHHHHhcCCHHHHHHHHHhC-
Q 045672 365 VS----RIKPN-YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGID--P--GREHYSCMIDLLGRAGKLQEAVKLIHEM- 434 (643)
Q Consensus 365 ~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~--p--~~~~~~~li~~~~~~g~~~~A~~~~~~m- 434 (643)
.. |-.+. ..+|..+...|...|++++|...|++..+-+.-. + ...++..+...|.+ |++++|++.|++.
T Consensus 64 ~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al 142 (307)
T 2ifu_A 64 EAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAA 142 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHH
Confidence 52 21111 4578888889999999999999999876532111 1 13577888889988 9999999999876
Q ss_pred CC---CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc------chHHHHHHHHHccCChhHHHHHHHHHH
Q 045672 435 PY---EPD----AVTWRALLGACKVHRNTDLAICAAKKILNLDPQDP------GTYILLSNIYANSQKWDEVAEVRKTMR 501 (643)
Q Consensus 435 ~~---~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~~m~ 501 (643)
.+ ..+ ..++..+...+...|++++|+..+++++++.|.+. ..+..++.++...|++++|...+++..
T Consensus 143 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 143 AVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 11 111 35678888899999999999999999999765543 367778888899999999999999887
No 130
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.43 E-value=6.8e-06 Score=80.12 Aligned_cols=162 Identities=7% Similarity=-0.020 Sum_probs=118.4
Q ss_pred HHhHHHHHHHhcCCHHHHHHHHhhcCC--C-C------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CCC--HH
Q 045672 308 LNNALLDMYCKCGSLEDAMSVFSRMIQ--K-D------VISWSTMISGLAQNGYSQEALKLFESMKVSRI---KPN--YI 373 (643)
Q Consensus 308 ~~~~Li~~y~~~g~~~~A~~~~~~m~~--~-~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~p~--~~ 373 (643)
.+...+..+...|++++|.+.+....+ + . ...+..+...+...|++++|+..|++...... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344567788899999999988876522 1 1 12344456667788999999999998875321 122 44
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-----hHHHHHHHHHHHhcCCHHHHHHHHHhC-C------CCCC-H
Q 045672 374 TIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPG-----REHYSCMIDLLGRAGKLQEAVKLIHEM-P------YEPD-A 440 (643)
Q Consensus 374 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-~------~~p~-~ 440 (643)
++..+...|...|++++|..+|++..+.....|+ ...+..+...|.+.|++++|.+.+++. . .... .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888888999999999999999988732111222 257888999999999999999998876 1 1111 5
Q ss_pred HHHHHHHHHHHHcCCHHHH-HHHHHHHHhc
Q 045672 441 VTWRALLGACKVHRNTDLA-ICAAKKILNL 469 (643)
Q Consensus 441 ~~~~~ll~~~~~~g~~~~a-~~~~~~~~~~ 469 (643)
.+|..+...+...|++++| ...+++++.+
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 5788888889999999999 7778887753
No 131
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.42 E-value=1.9e-06 Score=85.85 Aligned_cols=144 Identities=10% Similarity=-0.025 Sum_probs=103.9
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 045672 336 DVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMI 415 (643)
Q Consensus 336 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 415 (643)
+...|..+...|.+.|++++|+..|++..... |+...+ ..+.+.++- . -....|..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~-----------~~~~~~~~~-~--------~~~~~~~nla 203 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSF-----------SNEEAQKAQ-A--------LRLASHLNLA 203 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCC-----------CSHHHHHHH-H--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccC-----------ChHHHHHHH-H--------HHHHHHHHHH
Confidence 34466667777777777777777777766532 221100 001111100 0 0135677788
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHH
Q 045672 416 DLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEV 493 (643)
Q Consensus 416 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 493 (643)
.+|.+.|++++|.+.+++. ...| +...|..+..++...|++++|+..++++++++|++..++..++.++...|++++|
T Consensus 204 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 204 MCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888877 3334 5678888889999999999999999999999999999999999999999999999
Q ss_pred -HHHHHHHH
Q 045672 494 -AEVRKTMR 501 (643)
Q Consensus 494 -~~~~~~m~ 501 (643)
..+++.|.
T Consensus 284 ~~~~~~~~~ 292 (336)
T 1p5q_A 284 EKKLYANMF 292 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 55666664
No 132
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.42 E-value=7.1e-07 Score=79.70 Aligned_cols=120 Identities=10% Similarity=0.071 Sum_probs=86.3
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHHcCCH--H
Q 045672 383 SHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGA-CKVHRNT--D 457 (643)
Q Consensus 383 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~-~~~~g~~--~ 457 (643)
...|++++|...++...+. .+.+...+..+...|...|++++|.+.|++. ...| +...|..+... +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 3456667777777766653 2335566777777777777777777777765 2223 55567777777 6778887 8
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCC
Q 045672 458 LAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARG 504 (643)
Q Consensus 458 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 504 (643)
+|+..++++++.+|+++.++..++.+|...|++++|...+++..+..
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 89999999998888888888889999999999999999988887654
No 133
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.41 E-value=1.9e-06 Score=71.97 Aligned_cols=96 Identities=20% Similarity=0.137 Sum_probs=79.4
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 045672 408 REHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYA 485 (643)
Q Consensus 408 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 485 (643)
...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|+++.+|..++.+|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 345666777788888888888888776 2233 56788888888899999999999999999999999999999999999
Q ss_pred ccCChhHHHHHHHHHHhC
Q 045672 486 NSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 486 ~~g~~~~a~~~~~~m~~~ 503 (643)
..|++++|.+.+++..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 999999999999888763
No 134
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.40 E-value=1.3e-05 Score=73.80 Aligned_cols=161 Identities=9% Similarity=-0.089 Sum_probs=121.0
Q ss_pred chhHHhHHHHHHHhcCCHHHHHHHHhhcCCC-ChhhHHHHHHHHHhcC----CHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 045672 305 DLILNNALLDMYCKCGSLEDAMSVFSRMIQK-DVISWSTMISGLAQNG----YSQEALKLFESMKVSRIKPNYITIVGVL 379 (643)
Q Consensus 305 ~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~-~~~~~~~li~~~~~~g----~~~~A~~l~~~m~~~g~~p~~~t~~~ll 379 (643)
+...+..|..+|...+++++|...|++..+. +...+..+...|.. + ++++|++.|++..+.| +...+..+.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg 92 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLA 92 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 3445566777777888888888888877543 66677777777777 6 8999999999987755 556666777
Q ss_pred HHHhc----cCCHHHHHHHHHHhHHhcCCCCC---hHHHHHHHHHHHh----cCCHHHHHHHHHhC-CCCCCHHHHHHHH
Q 045672 380 FACSH----AGFVEDGWNHFKSMKKFYGIDPG---REHYSCMIDLLGR----AGKLQEAVKLIHEM-PYEPDAVTWRALL 447 (643)
Q Consensus 380 ~a~~~----~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~----~g~~~~A~~~~~~m-~~~p~~~~~~~ll 447 (643)
..|.. .+++++|..+|+...+. .|+ ...+..|..+|.. .+++++|.+.|++. ...++...+..|.
T Consensus 93 ~~y~~g~g~~~d~~~A~~~~~~A~~~---~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~Lg 169 (212)
T 3rjv_A 93 RVLVNRQAGATDVAHAITLLQDAARD---SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAG 169 (212)
T ss_dssp HHHTCGGGSSCCHHHHHHHHHHHTSS---TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHHHH
T ss_pred HHHHcCCCCccCHHHHHHHHHHHHHc---CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 77766 78999999999888762 332 6778888888888 78899999999887 2224555666676
Q ss_pred HHHHHc-C-----CHHHHHHHHHHHHhcCCC
Q 045672 448 GACKVH-R-----NTDLAICAAKKILNLDPQ 472 (643)
Q Consensus 448 ~~~~~~-g-----~~~~a~~~~~~~~~~~p~ 472 (643)
..|... | +.++|+..++++.+.+..
T Consensus 170 ~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 170 MMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 666543 3 899999999999887653
No 135
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.36 E-value=2.7e-06 Score=68.76 Aligned_cols=98 Identities=13% Similarity=0.082 Sum_probs=81.5
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CcchHHHHHH
Q 045672 407 GREHYSCMIDLLGRAGKLQEAVKLIHEM-PYE-PDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQ--DPGTYILLSN 482 (643)
Q Consensus 407 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~ 482 (643)
+...+..+...+.+.|++++|...+++. ... .+...|..+...+...|++++|+..++++++..|. +...+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 3456667777888888888888888776 222 35667888888899999999999999999999999 8889999999
Q ss_pred HHHcc-CChhHHHHHHHHHHhCC
Q 045672 483 IYANS-QKWDEVAEVRKTMRARG 504 (643)
Q Consensus 483 ~~~~~-g~~~~a~~~~~~m~~~g 504 (643)
+|... |++++|.+.++...+..
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcc
Confidence 99999 99999999999888654
No 136
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.36 E-value=2.7e-05 Score=75.83 Aligned_cols=93 Identities=13% Similarity=0.081 Sum_probs=62.2
Q ss_pred HHhHHHHHHHhcCCHHHHHHHHhhcCC------C----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC-H
Q 045672 308 LNNALLDMYCKCGSLEDAMSVFSRMIQ------K----DVISWSTMISGLAQNGYSQEALKLFESMKV----SRIKPN-Y 372 (643)
Q Consensus 308 ~~~~Li~~y~~~g~~~~A~~~~~~m~~------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~-~ 372 (643)
+++.+...|...|++++|...|+++.+ . ...+|..+...|.+.|++++|+..+++..+ .+..+. .
T Consensus 157 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~ 236 (293)
T 3u3w_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence 456666777777777777777766531 1 123667777788888888888888877653 222222 5
Q ss_pred HHHHHHHHHHhccC-CHHHHHHHHHHhHH
Q 045672 373 ITIVGVLFACSHAG-FVEDGWNHFKSMKK 400 (643)
Q Consensus 373 ~t~~~ll~a~~~~g-~~~~a~~~~~~~~~ 400 (643)
.++..+..++.+.| ..++|.+.+++...
T Consensus 237 ~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 66777777888888 45888887777654
No 137
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.36 E-value=1.2e-06 Score=83.24 Aligned_cols=134 Identities=16% Similarity=0.047 Sum_probs=81.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC--hHHHHHHHHHHH
Q 045672 342 TMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPG--REHYSCMIDLLG 419 (643)
Q Consensus 342 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~ 419 (643)
.....+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+...+. . .|. ...+..+..++.
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~al~ 182 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVAAA 182 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHHHH
Confidence 3455566667777777777666543 344433334444566777777777777644331 1 111 224556667777
Q ss_pred hcCCHHHHHHHHHhCC---CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 045672 420 RAGKLQEAVKLIHEMP---YEPD--AVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILL 480 (643)
Q Consensus 420 ~~g~~~~A~~~~~~m~---~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 480 (643)
+.|++++|++.|++.. ..|. ...+.....++...|+.++|...|+++...+|+ ......|
T Consensus 183 ~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 183 NLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 7777777777777661 1143 235556666778888888888888888888886 5444333
No 138
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.33 E-value=5e-06 Score=70.29 Aligned_cols=98 Identities=16% Similarity=0.124 Sum_probs=82.7
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 045672 406 PGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNI 483 (643)
Q Consensus 406 p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 483 (643)
.+...+..+...+...|++++|...|++. ...| +...|..+...+...|++++|+..++++++.+|+++.++..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 35667777888888888888888888776 2233 567788888889999999999999999999999999999999999
Q ss_pred HHccCChhHHHHHHHHHHhC
Q 045672 484 YANSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 484 ~~~~g~~~~a~~~~~~m~~~ 503 (643)
|...|++++|...+++..+.
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999988764
No 139
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.32 E-value=2.3e-06 Score=70.99 Aligned_cols=94 Identities=19% Similarity=0.123 Sum_probs=82.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHcc
Q 045672 410 HYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANS 487 (643)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 487 (643)
.+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++.++..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 4556677888999999999999887 3344 6778888888899999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHhC
Q 045672 488 QKWDEVAEVRKTMRAR 503 (643)
Q Consensus 488 g~~~~a~~~~~~m~~~ 503 (643)
|++++|...+++..+.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 99 HNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999988764
No 140
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.31 E-value=1.2e-05 Score=65.56 Aligned_cols=107 Identities=14% Similarity=0.069 Sum_probs=55.8
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHH
Q 045672 375 IVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKV 452 (643)
Q Consensus 375 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~ 452 (643)
+..+...+...|++++|...|+...+. .+.+...+..+...+.+.|++++|.+.+++. ...| +...|..+...+..
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 333444444445555555555444432 1223444444555555555555555555443 1122 34455556666666
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 045672 453 HRNTDLAICAAKKILNLDPQDPGTYILLSNI 483 (643)
Q Consensus 453 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 483 (643)
.|++++|...++++++.+|+++..+..++.+
T Consensus 85 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 6667777777777776666666555555444
No 141
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.30 E-value=4.8e-06 Score=74.20 Aligned_cols=127 Identities=10% Similarity=0.071 Sum_probs=92.8
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH-HHhcCCH--
Q 045672 348 AQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDL-LGRAGKL-- 424 (643)
Q Consensus 348 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~~-- 424 (643)
...|++++|+..+++..... +.+...+..+...+...|++++|...|+...+. .+.+...+..+... +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcch
Confidence 34677778888888776643 335667777778888888888888888888763 23356677777777 7788887
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchH
Q 045672 425 QEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTY 477 (643)
Q Consensus 425 ~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 477 (643)
++|.+.++++ ...| +...|..+...+...|++++|+..++++++..|+++...
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 8888888776 3334 466788888889999999999999999999999876543
No 142
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.30 E-value=3.8e-06 Score=73.84 Aligned_cols=96 Identities=10% Similarity=0.066 Sum_probs=66.2
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 045672 408 REHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYA 485 (643)
Q Consensus 408 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 485 (643)
...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|+++.+|..++.+|.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 345556666666677777777666665 2223 45566667777777777777777777777777777777777777777
Q ss_pred ccCChhHHHHHHHHHHhC
Q 045672 486 NSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 486 ~~g~~~~a~~~~~~m~~~ 503 (643)
..|++++|.+.+++..+.
T Consensus 91 ~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHh
Confidence 777777777777777653
No 143
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.30 E-value=6.5e-06 Score=74.94 Aligned_cols=83 Identities=12% Similarity=-0.056 Sum_probs=43.6
Q ss_pred hcCCHHHHHH---HHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHhccCCHH
Q 045672 318 KCGSLEDAMS---VFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKV----SRIKP-NYITIVGVLFACSHAGFVE 389 (643)
Q Consensus 318 ~~g~~~~A~~---~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p-~~~t~~~ll~a~~~~g~~~ 389 (643)
..|++++|.+ .+..-+......++.+...+...|++++|+..+++... .+..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4566666666 44332223445666666666777777777777666544 11111 1234444555555666666
Q ss_pred HHHHHHHHhHH
Q 045672 390 DGWNHFKSMKK 400 (643)
Q Consensus 390 ~a~~~~~~~~~ 400 (643)
+|.+.+++..+
T Consensus 84 ~A~~~~~~al~ 94 (203)
T 3gw4_A 84 AARRCFLEERE 94 (203)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666555443
No 144
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.29 E-value=7.7e-06 Score=77.63 Aligned_cols=182 Identities=10% Similarity=-0.009 Sum_probs=131.8
Q ss_pred hcCCHHHHHHHHhhcCCC---ChhhHHHH-------HHHHHhcCCHHHHHHHHHHHHHCCCCCC----------------
Q 045672 318 KCGSLEDAMSVFSRMIQK---DVISWSTM-------ISGLAQNGYSQEALKLFESMKVSRIKPN---------------- 371 (643)
Q Consensus 318 ~~g~~~~A~~~~~~m~~~---~~~~~~~l-------i~~~~~~g~~~~A~~l~~~m~~~g~~p~---------------- 371 (643)
..++...|.+.|.++... ....|+.+ ...+...++..+++..++.-.. +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 467778888888777432 34467666 3455555555555555555433 2222
Q ss_pred ------HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCH----H
Q 045672 372 ------YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDA----V 441 (643)
Q Consensus 372 ------~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~----~ 441 (643)
......+...+...|++++|.+.|..+... .|+......+...+.+.|++++|+..|+.....|+. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 112234556778899999999999888752 354436666777899999999999999977444433 3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CC-CcchHHHHHHHHHccCChhHHHHHHHHHHhCC
Q 045672 442 TWRALLGACKVHRNTDLAICAAKKILNLD--PQ-DPGTYILLSNIYANSQKWDEVAEVRKTMRARG 504 (643)
Q Consensus 442 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 504 (643)
.+..+..++...|++++|+..|+++.... |. .+.....++.++.+.|+.++|..+|+++....
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 56777788999999999999999998543 54 44578899999999999999999999998743
No 145
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.29 E-value=6.1e-06 Score=75.10 Aligned_cols=172 Identities=8% Similarity=-0.092 Sum_probs=102.8
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 045672 312 LLDMYCKCGSLEDAMSVFSRMIQK---DVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFV 388 (643)
Q Consensus 312 Li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 388 (643)
.+......|+++++.+.|+.-... ....|..+...+...|++++|+..|++.... .|+...+...
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~---------- 77 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ---------- 77 (198)
T ss_dssp ------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH----------
T ss_pred hhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh----------
Confidence 333444556666666666543222 3446777777788888888888888887763 2221100000
Q ss_pred HHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045672 389 EDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKI 466 (643)
Q Consensus 389 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 466 (643)
....-.. ......+..+..+|.+.|++++|.+.+++. ...| +...|..+..++...|++++|+..++++
T Consensus 78 -----~~~~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 148 (198)
T 2fbn_A 78 -----ILLDKKK----NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKA 148 (198)
T ss_dssp -----HHHHHHH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred -----hHHHHHH----HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 0000000 001345667777888888888888888776 2233 5667888888899999999999999999
Q ss_pred HhcCCCCcchHHHHHHHHHccCChhHHH-HHHHHHHhCC
Q 045672 467 LNLDPQDPGTYILLSNIYANSQKWDEVA-EVRKTMRARG 504 (643)
Q Consensus 467 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~~~g 504 (643)
++++|+++.++..++.++...|+.+++. ..+..|...|
T Consensus 149 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 149 ASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred HHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999888888776 5566555443
No 146
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.29 E-value=7.1e-06 Score=67.63 Aligned_cols=96 Identities=23% Similarity=0.292 Sum_probs=86.5
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 045672 408 REHYSCMIDLLGRAGKLQEAVKLIHEM-PY-EPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYA 485 (643)
Q Consensus 408 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 485 (643)
...+..+...+.+.|++++|.+.++++ .. ..+..+|..+...+...|++++|+..++++++..|+++.++..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 567888899999999999999999887 22 2467788899999999999999999999999999999999999999999
Q ss_pred ccCChhHHHHHHHHHHhC
Q 045672 486 NSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 486 ~~g~~~~a~~~~~~m~~~ 503 (643)
..|++++|.+.++++.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 999999999999998864
No 147
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.29 E-value=3e-05 Score=70.47 Aligned_cols=125 Identities=14% Similarity=0.061 Sum_probs=72.6
Q ss_pred HhHHHHHHHhcCCHHHHHHHHhhcCC---------CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC--CHH
Q 045672 309 NNALLDMYCKCGSLEDAMSVFSRMIQ---------KDVISWSTMISGLAQNGYSQEALKLFESMKVS----RIKP--NYI 373 (643)
Q Consensus 309 ~~~Li~~y~~~g~~~~A~~~~~~m~~---------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p--~~~ 373 (643)
+..+...|...|++++|...|++... .....++.+...|...|++++|++.+++.... +-.| ...
T Consensus 29 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 108 (203)
T 3gw4_A 29 RFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASA 108 (203)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHH
Confidence 34555555666666666666655422 12346777777888888888888888776542 1111 133
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHh
Q 045672 374 TIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPG----REHYSCMIDLLGRAGKLQEAVKLIHE 433 (643)
Q Consensus 374 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~ 433 (643)
.+..+...+...|++++|...+++..+...-.++ ...+..+...+.+.|++++|.+.+++
T Consensus 109 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 172 (203)
T 3gw4_A 109 NAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLR 172 (203)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 4556666777778888888777776542111111 12344555556666666666655544
No 148
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.28 E-value=1.9e-06 Score=74.43 Aligned_cols=103 Identities=10% Similarity=-0.032 Sum_probs=73.4
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 045672 373 ITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGAC 450 (643)
Q Consensus 373 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~ 450 (643)
..+..+...+...|++++|...|+...+. -+.+...|..+..+|.+.|++++|.+.|++. ...| +...|..+..++
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 34555566667777777777777776652 2335666677777777777777777777766 2233 456777778888
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCcchH
Q 045672 451 KVHRNTDLAICAAKKILNLDPQDPGTY 477 (643)
Q Consensus 451 ~~~g~~~~a~~~~~~~~~~~p~~~~~~ 477 (643)
...|++++|+..+++++++.|+++...
T Consensus 100 ~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred HHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 889999999999999999888877543
No 149
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.28 E-value=7.1e-06 Score=66.88 Aligned_cols=97 Identities=12% Similarity=0.092 Sum_probs=86.5
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 045672 408 REHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYA 485 (643)
Q Consensus 408 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 485 (643)
...+..+...+...|++++|.+.+++. ...| +...|..+...+...|++++|...++++++..|+++..+..++.+|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 456778888999999999999999887 2234 67788888899999999999999999999999999999999999999
Q ss_pred ccCChhHHHHHHHHHHhCC
Q 045672 486 NSQKWDEVAEVRKTMRARG 504 (643)
Q Consensus 486 ~~g~~~~a~~~~~~m~~~g 504 (643)
..|++++|.+.+++..+.+
T Consensus 84 ~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTC
T ss_pred HHhhHHHHHHHHHHHHHcC
Confidence 9999999999999988643
No 150
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.26 E-value=1.7e-05 Score=69.40 Aligned_cols=128 Identities=11% Similarity=-0.012 Sum_probs=86.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 045672 338 ISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDL 417 (643)
Q Consensus 338 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 417 (643)
..|..+...+...|++++|+..|++..... +.+..++..+...+...|++++|...++...+. .+.+...+..+...
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 356666777777788888888887776642 234666667777777788888888888777763 23456677777778
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-CHHHHH--HHHHHHHHcCCHHHHHHHHHHHHh
Q 045672 418 LGRAGKLQEAVKLIHEM-PYEP-DAVTWR--ALLGACKVHRNTDLAICAAKKILN 468 (643)
Q Consensus 418 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~--~ll~~~~~~g~~~~a~~~~~~~~~ 468 (643)
+.+.|++++|.+.++++ ...| +...+. .+...+...|++++|...+++..+
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 88888888888887766 2223 334443 333336677888888888777654
No 151
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.25 E-value=7.1e-06 Score=68.71 Aligned_cols=118 Identities=8% Similarity=-0.070 Sum_probs=92.7
Q ss_pred CCCCcchHHHHHHHHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHH
Q 045672 35 ITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNI 114 (643)
Q Consensus 35 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 114 (643)
+..+...|..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...++.+++... .+...+..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~ 89 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFIKGYTR 89 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHHHH
Confidence 34566789999999999999999999999998764 44778888899999999999999999999998753 46677888
Q ss_pred HHHHHHcCCChhHHHHHHccCCC---CCcchHHHHHHHHHhCC
Q 045672 115 LLNMHVKFSLLEEAQVLFDQMPE---RNVVSWTTMISAYCDAK 154 (643)
Q Consensus 115 li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g 154 (643)
+..+|.+.|++++|.+.|++..+ .+...+..+...+.+.|
T Consensus 90 la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 90 KAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 88888888888888888887654 23345555555554433
No 152
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.25 E-value=1e-05 Score=69.23 Aligned_cols=95 Identities=16% Similarity=0.041 Sum_probs=56.6
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 045672 408 REHYSCMIDLLGRAGKLQEAVKLIHEM-PYEPD----AVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSN 482 (643)
Q Consensus 408 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 482 (643)
...+..+...+.+.|++++|.+.|++. ...|+ ...|..+...+...|++++|+..++++++..|+++..+..++.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 344555555555666666666655554 33444 3455555555666666666666666666666666666666666
Q ss_pred HHHccCChhHHHHHHHHHHh
Q 045672 483 IYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 483 ~~~~~g~~~~a~~~~~~m~~ 502 (643)
+|...|++++|.+.+++..+
T Consensus 108 ~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666554
No 153
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.19 E-value=8.2e-06 Score=68.20 Aligned_cols=94 Identities=4% Similarity=-0.009 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcc-------hHHH
Q 045672 409 EHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPG-------TYIL 479 (643)
Q Consensus 409 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~ 479 (643)
..+..+...+.+.|++++|++.|++. .+.| +...|..+..++...|++++|+..++++++++|++.. +|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 34566778888889999999888876 3344 5667888888999999999999999999998877543 6778
Q ss_pred HHHHHHccCChhHHHHHHHHHHh
Q 045672 480 LSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 480 l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
++.+|...|++++|.+.+++..+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 88999999999999999998775
No 154
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.19 E-value=1.6e-05 Score=66.08 Aligned_cols=109 Identities=11% Similarity=-0.061 Sum_probs=68.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 045672 374 TIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACK 451 (643)
Q Consensus 374 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~ 451 (643)
.+..+...+.+.|++++|...|+...+. .+.+...|..+..+|.+.|++++|.+.+++. ...| +...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 3444445555566666666666655542 2234555666666666666666666666655 2233 4556777777788
Q ss_pred HcCCHHHHHHHHHHHHhcC------CCCcchHHHHHHHH
Q 045672 452 VHRNTDLAICAAKKILNLD------PQDPGTYILLSNIY 484 (643)
Q Consensus 452 ~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~ 484 (643)
..|++++|+..++++++++ |.+......+..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 8888888888888888887 76666665555443
No 155
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.18 E-value=3.3e-05 Score=65.95 Aligned_cols=111 Identities=11% Similarity=-0.026 Sum_probs=70.3
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHH
Q 045672 373 ITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPG----REHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRAL 446 (643)
Q Consensus 373 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l 446 (643)
..+..+...+...|++++|...|+...+ ..|+ ...+..+...|.+.|++++|.+.+++. ...| +...|..+
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 3444444444555555555555554443 2233 345555666666666666666666554 2223 45677777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHc
Q 045672 447 LGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYAN 486 (643)
Q Consensus 447 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 486 (643)
...+...|++++|...++++++..|++...+..+..+..+
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 7888888999999999999999999887777766665543
No 156
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.17 E-value=1.1e-05 Score=68.99 Aligned_cols=105 Identities=11% Similarity=-0.025 Sum_probs=69.5
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 045672 374 TIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACK 451 (643)
Q Consensus 374 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~ 451 (643)
.+..+...+...|++++|...|+.+.+. -+.+...|..+..+|.+.|++++|.+.|++. ...| +...|..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 3444455566666677776666666652 2234556666667777777777777777665 2223 4456667777788
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 045672 452 VHRNTDLAICAAKKILNLDPQDPGTYILL 480 (643)
Q Consensus 452 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 480 (643)
..|++++|+..+++++++.|+++......
T Consensus 98 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 126 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAAAQPAHEALA 126 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCcchHHHH
Confidence 88888888888888888888777554443
No 157
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.17 E-value=0.00095 Score=65.48 Aligned_cols=173 Identities=10% Similarity=-0.016 Sum_probs=97.0
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcCC-hhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhc-C-
Q 045672 246 GGFAQNSDVDEALNLYKRMKRAGFAAD-QSTLTSVLRACTGLA-LLELGTQVHVHVLK-YDHDLILNNALLDMYCKC-G- 320 (643)
Q Consensus 246 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~-~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~-g- 320 (643)
....+.+..++|++++.++... .|+ ...++.--.++...+ .++++......+.+ .+.+..+|+.-.-.+.+. +
T Consensus 62 ~~~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~ 139 (349)
T 3q7a_A 62 AIAAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQ 139 (349)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCS
T ss_pred HHHHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCC
Confidence 3344455566788888887774 343 333444444444555 46666666666666 455555665555555444 5
Q ss_pred CHHHHHHHHhhcCCC---ChhhHHHHHHHHHhcCCHH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC--
Q 045672 321 SLEDAMSVFSRMIQK---DVISWSTMISGLAQNGYSQ--------EALKLFESMKVSRIKPNYITIVGVLFACSHAGF-- 387 (643)
Q Consensus 321 ~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~--------~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~-- 387 (643)
+++++.+.++.+.+. |..+|+--.-.+.+.|..+ ++++.++++.+.. .-|...|+.....+.+.+.
T Consensus 140 ~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~ 218 (349)
T 3q7a_A 140 DPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAE 218 (349)
T ss_dssp CCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCC
T ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccc
Confidence 667777777777554 3445554444444444343 6777777776643 3345566655555555554
Q ss_pred -----HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCC
Q 045672 388 -----VEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGK 423 (643)
Q Consensus 388 -----~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 423 (643)
++++++.+.++... .+-|...|+-+-..+.+.|+
T Consensus 219 ~~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 219 TSSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred cchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCC
Confidence 46666666666552 23345555555555555444
No 158
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.17 E-value=2.1e-05 Score=68.92 Aligned_cols=108 Identities=10% Similarity=-0.064 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 045672 372 YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGA 449 (643)
Q Consensus 372 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~ 449 (643)
...+..+...+...|++++|...|+...+. .+.+...|..+..+|.+.|++++|.+.|++. ...| +...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 344555566666667777777777666653 2235566777777777777777777777766 2334 46688888888
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 045672 450 CKVHRNTDLAICAAKKILNLDPQDPGTYILLS 481 (643)
Q Consensus 450 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 481 (643)
+...|++++|+..++++++++|+++..+...+
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 99999999999999999999999887655444
No 159
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.17 E-value=1.5e-05 Score=66.28 Aligned_cols=97 Identities=15% Similarity=0.104 Sum_probs=86.7
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 045672 407 GREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIY 484 (643)
Q Consensus 407 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 484 (643)
+...+..+...+...|++++|.+.+++. ...| +...|..+...+...|++++|+..++++++..|+++..+..++.+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 4567788889999999999999999887 2233 6778888889999999999999999999999999999999999999
Q ss_pred HccCChhHHHHHHHHHHhC
Q 045672 485 ANSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 485 ~~~g~~~~a~~~~~~m~~~ 503 (643)
...|++++|.+.+++..+.
T Consensus 91 ~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhc
Confidence 9999999999999998864
No 160
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.16 E-value=1e-05 Score=69.84 Aligned_cols=98 Identities=9% Similarity=-0.019 Sum_probs=54.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 045672 374 TIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACK 451 (643)
Q Consensus 374 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~ 451 (643)
.+..+...+.+.|++++|...|+.+.+. -+.+...|..+..+|.+.|++++|.+.|++. ...| +...|..+..++.
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 3344444455555555555555555542 1223445555555555566666666555554 2223 3445666666677
Q ss_pred HcCCHHHHHHHHHHHHhcCCCC
Q 045672 452 VHRNTDLAICAAKKILNLDPQD 473 (643)
Q Consensus 452 ~~g~~~~a~~~~~~~~~~~p~~ 473 (643)
..|++++|+..|++++++.|++
T Consensus 116 ~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HTTCHHHHHHHHHHHHHHCCCH
T ss_pred HcCCHHHHHHHHHHHHHhCCCH
Confidence 7777777777777777777654
No 161
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.15 E-value=0.00045 Score=67.47 Aligned_cols=188 Identities=12% Similarity=0.064 Sum_probs=93.7
Q ss_pred hHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcC--CHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCC-HHHHHHHHH
Q 045672 289 LELGTQVHVHVLK-YDHDLILNNALLDMYCKCG--SLEDAMSVFSRMIQ---KDVISWSTMISGLAQNGY-SQEALKLFE 361 (643)
Q Consensus 289 ~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g--~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~-~~~A~~l~~ 361 (643)
++.+..++..+.. .+.+..+|+.-.-.+.+.| .++++...++.+.+ +|..+|+--.-.+...|. .+++++.++
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~ 169 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD 169 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 3455555555555 4445555555555555555 36666666666633 345566655555556666 467777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhcc--------------CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhc------
Q 045672 362 SMKVSRIKPNYITIVGVLFACSHA--------------GFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRA------ 421 (643)
Q Consensus 362 ~m~~~g~~p~~~t~~~ll~a~~~~--------------g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~------ 421 (643)
++.+.. +-|...|+.....+.+. +.++++++.+...... .+-|...|+-+-..+.+.
T Consensus 170 ~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 170 SLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCcccc
Confidence 766643 23444454443333322 3355566666655542 223444444443333333
Q ss_pred -----CCHHHHHHHHHhC-CCCCCHHHHHHHHHHH-----HHcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 045672 422 -----GKLQEAVKLIHEM-PYEPDAVTWRALLGAC-----KVHRNTDLAICAAKKILNLDPQDPGTYILL 480 (643)
Q Consensus 422 -----g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~-----~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 480 (643)
+.++++++.++++ ...||. .|..+..+. ...|..++....+.++++++|....-|.-+
T Consensus 247 ~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~ 315 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 315 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHH
Confidence 3345555555554 333443 232211111 123455555666666666666554444444
No 162
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.15 E-value=1.7e-05 Score=76.71 Aligned_cols=181 Identities=9% Similarity=-0.057 Sum_probs=104.1
Q ss_pred HHHhcCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHHH
Q 045672 281 RACTGLALLELGTQVHVHVLK-YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ---KDVISWSTMISGLAQNGYSQEA 356 (643)
Q Consensus 281 ~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A 356 (643)
..+...|+++.|...+..+.+ .+.+...+..+...|.+.|++++|...|++..+ .+...|..+..+|...|++++|
T Consensus 12 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A 91 (281)
T 2c2l_A 12 NRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEA 91 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 333344444444444444444 233445566777788888888888888887754 2556788888889999999999
Q ss_pred HHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-
Q 045672 357 LKLFESMKVSRIKPNY-ITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM- 434 (643)
Q Consensus 357 ~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m- 434 (643)
+..|++..+. .|+. ..+...+.... ...++.. +..... ...+++......+... ..|++++|.+.+++.
T Consensus 92 ~~~~~~al~l--~p~~~~~~~~~~~~~~---~~~~~~~-~~~~~~-~~~~~~~~i~~~l~~l--~~~~~~~A~~~~~~al 162 (281)
T 2c2l_A 92 IANLQRAYSL--AKEQRLNFGDDIPSAL---RIAKKKR-WNSIEE-RRIHQESELHSYLTRL--IAAERERELEECQRNH 162 (281)
T ss_dssp HHHHHHHHHH--HHHTTCCCCSHHHHHH---HHHHHHH-HHHHHH-TCCCCCCHHHHHHHHH--HHHHHHHHHTTTSGGG
T ss_pred HHHHHHHHHh--CccchhhHHHHHHHHH---HHHHHHH-HHHHHH-HHHhhhHHHHHHHHHH--HHHHHHHHHHHHHhhh
Confidence 9999887653 2221 01111111111 1111111 122222 1444555554444433 368899999888776
Q ss_pred CCCCCHHHHH-HHHHHHHHc-CCHHHHHHHHHHHHhcC
Q 045672 435 PYEPDAVTWR-ALLGACKVH-RNTDLAICAAKKILNLD 470 (643)
Q Consensus 435 ~~~p~~~~~~-~ll~~~~~~-g~~~~a~~~~~~~~~~~ 470 (643)
...|+..... .+...+... +.+++|.++|+++.+..
T Consensus 163 ~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~ 200 (281)
T 2c2l_A 163 EGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKR 200 (281)
T ss_dssp TTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTT
T ss_pred ccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 5567655433 333334444 67888999998887643
No 163
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.13 E-value=9.8e-06 Score=69.42 Aligned_cols=62 Identities=16% Similarity=0.059 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------CCCCcchH----HHHHHHHHccCChhHHHHHHHHHHh
Q 045672 441 VTWRALLGACKVHRNTDLAICAAKKILNL-------DPQDPGTY----ILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 441 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
..|..+..++...|++++|+..+++++++ +|++..+| ...+.++...|++++|...|++..+
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 37888888899999999999999999998 99999999 9999999999999999999998875
No 164
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.11 E-value=1.8e-05 Score=82.82 Aligned_cols=117 Identities=11% Similarity=0.054 Sum_probs=57.8
Q ss_pred HHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH
Q 045672 313 LDMYCKCGSLEDAMSVFSRMIQ---KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVE 389 (643)
Q Consensus 313 i~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 389 (643)
...|.+.|++++|.+.|++..+ .+..+|..+..+|.+.|++++|++.+++..+.. +-+..++..+..++...|+++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 3345556666666666655422 234555666666666666666666666665532 122445555555566666666
Q ss_pred HHHHHHHHhHHhcCCCCChHHHHHHHHH--HHhcCCHHHHHHHHH
Q 045672 390 DGWNHFKSMKKFYGIDPGREHYSCMIDL--LGRAGKLQEAVKLIH 432 (643)
Q Consensus 390 ~a~~~~~~~~~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~~~~ 432 (643)
+|.+.|++..+.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 92 eA~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHS--TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 6666666555421 1122233333333 555555555555554
No 165
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.10 E-value=0.00025 Score=69.64 Aligned_cols=229 Identities=13% Similarity=0.140 Sum_probs=161.5
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcC-CHHHHHHHHh
Q 045672 253 DVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK-YDHDLILNNALLDMYCKCG-SLEDAMSVFS 330 (643)
Q Consensus 253 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g-~~~~A~~~~~ 330 (643)
++.+|...++.+.+.+. ..++|.++...++. .+.+..+|+.--..+...| .++++...++
T Consensus 52 ~y~~~~~~~r~~~~~~e------------------~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~ 113 (349)
T 3q7a_A 52 EYKDAMDYFRAIAAKEE------------------KSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMN 113 (349)
T ss_dssp HHHHHHHHHHHHHHTTC------------------CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCC------------------CCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 45566666666665542 23567778888888 5556677887777777788 5999999999
Q ss_pred hcCC---CChhhHHHHHHHHHhc-C-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH--------HHHHHHHH
Q 045672 331 RMIQ---KDVISWSTMISGLAQN-G-YSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVE--------DGWNHFKS 397 (643)
Q Consensus 331 ~m~~---~~~~~~~~li~~~~~~-g-~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~--------~a~~~~~~ 397 (643)
.+.. ++..+|+.-.-.+.+. + ++++++++++++.+.. +-|...|..-.....+.|..+ ++++++++
T Consensus 114 ~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k 192 (349)
T 3q7a_A 114 EFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNE 192 (349)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHH
Confidence 8854 3566788777777766 7 8899999999998753 335667766555555555555 88999999
Q ss_pred hHHhcCCCCChHHHHHHHHHHHhcCC-------HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCH------------
Q 045672 398 MKKFYGIDPGREHYSCMIDLLGRAGK-------LQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNT------------ 456 (643)
Q Consensus 398 ~~~~~~~~p~~~~~~~li~~~~~~g~-------~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~------------ 456 (643)
+.+. .+-|...|+....++.+.++ ++++++.++++ ...| |...|+-+-..+.+.|+.
T Consensus 193 ~I~~--dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~ 270 (349)
T 3q7a_A 193 MLRV--DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYT 270 (349)
T ss_dssp HHHH--CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGT
T ss_pred HHHh--CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccc
Confidence 9874 34467778877777877776 78888888776 3334 777888877777766654
Q ss_pred --------HHHHHHHHHHHhcC------CCCcchHHHHHHHHHccCChhHHHHHHHHHHh
Q 045672 457 --------DLAICAAKKILNLD------PQDPGTYILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 457 --------~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
........++.... +..+.+...|+++|...|+.++|.++++.+.+
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 271 ASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp C--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 22223333332222 45667888999999999999999999999874
No 166
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.08 E-value=1.4e-05 Score=66.62 Aligned_cols=91 Identities=16% Similarity=0.129 Sum_probs=62.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---cchHHHHHHHH
Q 045672 413 CMIDLLGRAGKLQEAVKLIHEM-PYEPDA----VTWRALLGACKVHRNTDLAICAAKKILNLDPQD---PGTYILLSNIY 484 (643)
Q Consensus 413 ~li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~ 484 (643)
.+...+.+.|++++|.+.|++. ...|+. ..+..+...+...|++++|+..++++++..|++ +.++..++.+|
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 3445566677777777766655 112221 355566666777788888888888888877777 56677788888
Q ss_pred HccCChhHHHHHHHHHHhC
Q 045672 485 ANSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 485 ~~~g~~~~a~~~~~~m~~~ 503 (643)
...|++++|...++++.+.
T Consensus 87 ~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 8888888888888777653
No 167
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.08 E-value=2.7e-05 Score=65.66 Aligned_cols=100 Identities=7% Similarity=-0.142 Sum_probs=65.8
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 045672 371 NYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLG 448 (643)
Q Consensus 371 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~ 448 (643)
+...+..+...+...|++++|...|....+. .+.+...+..+...|...|++++|...+++. ...| +...|..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 3455555666666666666666666666552 2234556666666677777777777666655 2223 4557777777
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCC
Q 045672 449 ACKVHRNTDLAICAAKKILNLDPQ 472 (643)
Q Consensus 449 ~~~~~g~~~~a~~~~~~~~~~~p~ 472 (643)
.+...|++++|+..+++++++.|+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 788888888888888888887766
No 168
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.07 E-value=3.4e-05 Score=80.29 Aligned_cols=144 Identities=10% Similarity=-0.002 Sum_probs=100.4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 045672 337 VISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMID 416 (643)
Q Consensus 337 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 416 (643)
...|..+...|.+.|++++|+..|++.++. .|+...+ . -+...+ ... -....|..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~----------~-~~~~~~-~~~--------~~~~~~~nla~ 325 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL----------S-EKESKA-SES--------FLLAAFLNLAM 325 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC----------C-HHHHHH-HHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC----------C-hHHHHH-HHH--------HHHHHHHHHHH
Confidence 446777777788888888888888877653 2221100 0 011000 000 11356778888
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHH
Q 045672 417 LLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVA 494 (643)
Q Consensus 417 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 494 (643)
+|.+.|++++|++.++++ ...| +...|..+..++...|++++|+..|+++++++|++..++..++.++.+.|+++++.
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999888877 3333 56788889999999999999999999999999999999999999999999998876
Q ss_pred H-HHHHHHh
Q 045672 495 E-VRKTMRA 502 (643)
Q Consensus 495 ~-~~~~m~~ 502 (643)
+ .++.|..
T Consensus 406 ~~~~~~~f~ 414 (457)
T 1kt0_A 406 RRIYANMFK 414 (457)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHHh
Confidence 4 5555543
No 169
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.05 E-value=4.7e-05 Score=78.59 Aligned_cols=188 Identities=7% Similarity=-0.072 Sum_probs=128.7
Q ss_pred HHHhcCCHHHHHHHHhhcCCC-----C---------------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHH
Q 045672 315 MYCKCGSLEDAMSVFSRMIQK-----D---------------VISWSTMISGLAQNGYSQEALKLFESMKVSR-IKPNYI 373 (643)
Q Consensus 315 ~y~~~g~~~~A~~~~~~m~~~-----~---------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~ 373 (643)
.+.+.|++++|.+.|..+.+. + ..++..+...|...|++++|.+.+.++...- -.++..
T Consensus 13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~ 92 (434)
T 4b4t_Q 13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSK 92 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchH
Confidence 345667777777777665221 0 1136678888999999999999888765421 112221
Q ss_pred ----HHHHHHHHHhccCCHHHHHHHHHHhHHhc---CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCC
Q 045672 374 ----TIVGVLFACSHAGFVEDGWNHFKSMKKFY---GIDP-GREHYSCMIDLLGRAGKLQEAVKLIHEM-------PYEP 438 (643)
Q Consensus 374 ----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p 438 (643)
..+.+-..+...|+.+++..++....... +..+ ...++..+...|...|++++|..++++. ..+|
T Consensus 93 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 172 (434)
T 4b4t_Q 93 TVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKP 172 (434)
T ss_dssp HHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCST
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccch
Confidence 22223334456788999988887765421 2222 2457788899999999999999988765 1123
Q ss_pred C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCC----cchHHHHHHHHHccCChhHHHHHHHHHHh
Q 045672 439 D-AVTWRALLGACKVHRNTDLAICAAKKILNLD---PQD----PGTYILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 439 ~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---p~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
. ..++..++..|...|++++|...+++++... +.+ ...+..++..+...|++++|...+.+..+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 173 SLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 2 3467778888999999999999999988653 222 24567788888999999999988877754
No 170
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.04 E-value=1.9e-05 Score=65.70 Aligned_cols=95 Identities=8% Similarity=0.056 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------cchHHH
Q 045672 409 EHYSCMIDLLGRAGKLQEAVKLIHEM-PY-EPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQD-------PGTYIL 479 (643)
Q Consensus 409 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~ 479 (643)
..+..+...+...|++++|...+++. .. +.+...|..+...+...|++++|...++++++..|++ +.++..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 45666777788888888888888776 22 2356678888888889999999999999999887765 778999
Q ss_pred HHHHHHccCChhHHHHHHHHHHhC
Q 045672 480 LSNIYANSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 480 l~~~~~~~g~~~~a~~~~~~m~~~ 503 (643)
++.+|...|++++|.+.+++..+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh
Confidence 999999999999999999998864
No 171
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.04 E-value=1.4e-05 Score=83.78 Aligned_cols=116 Identities=7% Similarity=-0.005 Sum_probs=81.1
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHH
Q 045672 381 ACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDL 458 (643)
Q Consensus 381 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~ 458 (643)
.+.+.|++++|.+.|++..+. .+.+...|..+..+|.+.|++++|.+.+++. ...| +...|..+..++...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 345566777777777766653 2234566777777777777777777777665 3334 45677777788888888888
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHH--HHccCChhHHHHHHH
Q 045672 459 AICAAKKILNLDPQDPGTYILLSNI--YANSQKWDEVAEVRK 498 (643)
Q Consensus 459 a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 498 (643)
|+..+++++++.|++..++..++.+ +.+.|++++|.+.++
T Consensus 93 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 8888888888888888888888777 778888888888876
No 172
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.03 E-value=4.4e-06 Score=68.68 Aligned_cols=83 Identities=13% Similarity=0.094 Sum_probs=57.1
Q ss_pred cCCHHHHHHHHHhC-CC---CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHH
Q 045672 421 AGKLQEAVKLIHEM-PY---EPD-AVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAE 495 (643)
Q Consensus 421 ~g~~~~A~~~~~~m-~~---~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 495 (643)
.|++++|+..|++. .. .|+ ...|..+...+...|++++|+..++++++.+|+++.++..++.+|...|++++|.+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 45666666666665 33 232 34566677777778888888888888888888887788888888888888888888
Q ss_pred HHHHHHhC
Q 045672 496 VRKTMRAR 503 (643)
Q Consensus 496 ~~~~m~~~ 503 (643)
.+++..+.
T Consensus 83 ~~~~al~~ 90 (117)
T 3k9i_A 83 LLLKIIAE 90 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 87777653
No 173
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.01 E-value=0.00085 Score=65.48 Aligned_cols=178 Identities=12% Similarity=0.098 Sum_probs=129.3
Q ss_pred HHHHHHHHhhcC---CCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC-HHHHHHHH
Q 045672 322 LEDAMSVFSRMI---QKDVISWSTMISGLAQNG--YSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGF-VEDGWNHF 395 (643)
Q Consensus 322 ~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g--~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~~~a~~~~ 395 (643)
++++...++.+. .++..+|+.-.-.+.+.| .+++++++++++.+.. +-|...|+.-...+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 567777777764 346678888777777877 4899999999999864 4466777776667777787 68999999
Q ss_pred HHhHHhcCCCCChHHHHHHHHHHHhc--------------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc------
Q 045672 396 KSMKKFYGIDPGREHYSCMIDLLGRA--------------GKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVH------ 453 (643)
Q Consensus 396 ~~~~~~~~~~p~~~~~~~li~~~~~~--------------g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~------ 453 (643)
..+.+. .+-|...|+....++.+. +.++++++.+++. ...| |...|+-+-..+...
T Consensus 169 ~~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHH--CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHH--CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcccc
Confidence 999884 344666776666665554 4588899888877 2334 677887655554444
Q ss_pred -----CCHHHHHHHHHHHHhcCCCCcchHHHHHHHH---HccCChhHHHHHHHHHHh
Q 045672 454 -----RNTDLAICAAKKILNLDPQDPGTYILLSNIY---ANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 454 -----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~---~~~g~~~~a~~~~~~m~~ 502 (643)
+.++++++.++++++++|++...+..++... ...|..+++...+.++++
T Consensus 247 ~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 4578999999999999999865554444322 246778888888888875
No 174
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.01 E-value=5.8e-05 Score=62.64 Aligned_cols=105 Identities=10% Similarity=0.019 Sum_probs=54.2
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC----C-CCCC----HHHHHHHHH
Q 045672 378 VLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM----P-YEPD----AVTWRALLG 448 (643)
Q Consensus 378 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~-~~p~----~~~~~~ll~ 448 (643)
+...+...|++++|...|+...+. .+.+...+..+...|.+.|++++|...++++ + ..++ ..+|..+..
T Consensus 10 l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 87 (131)
T 1elr_A 10 LGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHH
Confidence 333334444444444444444331 1223334444444444445555544444443 1 0112 445666667
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 045672 449 ACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYA 485 (643)
Q Consensus 449 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 485 (643)
.+...|++++|...++++++..| ++.....+..+..
T Consensus 88 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 88 SYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 77777888888888888887777 4555555554443
No 175
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.01 E-value=5.5e-05 Score=75.20 Aligned_cols=139 Identities=9% Similarity=-0.008 Sum_probs=88.7
Q ss_pred CChhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCC--C-C---------------hhhHHHHHHH
Q 045672 286 LALLELGTQVHVHVLK-YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ--K-D---------------VISWSTMISG 346 (643)
Q Consensus 286 ~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~--~-~---------------~~~~~~li~~ 346 (643)
+++++.|...+....+ .+.+...+..+...|.+.|++++|...|++... | + ...|..+..+
T Consensus 126 L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 4455566655555555 334567888999999999999999999998732 2 2 3566667777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHH
Q 045672 347 LAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQE 426 (643)
Q Consensus 347 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 426 (643)
|.+.|++++|+..|++.++.. +.+...+..+..++...|++++|...|+.+.+. .+.+...+..+..++.+.|+.++
T Consensus 206 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~ 282 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQRIRRQLA 282 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777766642 223555666666666666666666666666552 12234445555555555555555
Q ss_pred H
Q 045672 427 A 427 (643)
Q Consensus 427 A 427 (643)
|
T Consensus 283 a 283 (336)
T 1p5q_A 283 R 283 (336)
T ss_dssp H
T ss_pred H
Confidence 4
No 176
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.00 E-value=3.1e-05 Score=62.33 Aligned_cols=98 Identities=12% Similarity=-0.028 Sum_probs=59.6
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHH
Q 045672 375 IVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP---DAVTWRALLGAC 450 (643)
Q Consensus 375 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~~~~~~ll~~~ 450 (643)
+..+...+...|++++|...|+...+. .+.+...+..+...+.+.|++++|.+.+++. ...| +...|..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADAL 86 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence 334444455555555555555555542 1223445556666666666666666666555 2223 356677777777
Q ss_pred HHc-CCHHHHHHHHHHHHhcCCCCc
Q 045672 451 KVH-RNTDLAICAAKKILNLDPQDP 474 (643)
Q Consensus 451 ~~~-g~~~~a~~~~~~~~~~~p~~~ 474 (643)
... |++++|++.++++++..|+++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHhCCHHHHHHHHHHHhhcccCCC
Confidence 777 888888888888887777653
No 177
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.00 E-value=2.2e-05 Score=68.74 Aligned_cols=64 Identities=11% Similarity=0.021 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhC
Q 045672 440 AVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 440 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 503 (643)
...|..+..++...|++++|+..++++++++|+++.+|..++.+|...|++++|...+++..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 3567788888999999999999999999999999999999999999999999999999988764
No 178
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.98 E-value=5e-05 Score=65.71 Aligned_cols=61 Identities=15% Similarity=0.104 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC------CCcchHHHHHHHHHccCChhHHHHHHHHHHh
Q 045672 442 TWRALLGACKVHRNTDLAICAAKKILNLDP------QDPGTYILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 442 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
.+..+...+...|++++|...++++++..+ ....++..++.+|...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 455556667777777777777777765421 1234677888888888899888888887654
No 179
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.96 E-value=0.0001 Score=61.25 Aligned_cols=99 Identities=14% Similarity=0.070 Sum_probs=59.0
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCCCh---HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHH
Q 045672 380 FACSHAGFVEDGWNHFKSMKKFYGIDPGR---EHYSCMIDLLGRAGKLQEAVKLIHEM-PYEPD----AVTWRALLGACK 451 (643)
Q Consensus 380 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~ 451 (643)
..+...|++++|...|+.+.+.. +.+. ..+..+...|.+.|++++|.+.+++. ...|+ ...+..+..++.
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 10 FDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 34445555566655555555421 1112 34555556666666666666666554 11222 345666667777
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 045672 452 VHRNTDLAICAAKKILNLDPQDPGTYILL 480 (643)
Q Consensus 452 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 480 (643)
..|++++|...++++++..|+++......
T Consensus 88 ~~g~~~~A~~~~~~~~~~~p~~~~~~~a~ 116 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQYPGSDAARVAQ 116 (129)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTSHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHCCCChHHHHHH
Confidence 88888888888888888888776544433
No 180
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.95 E-value=1.7e-05 Score=72.18 Aligned_cols=141 Identities=8% Similarity=-0.009 Sum_probs=87.9
Q ss_pred cCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCC---CCh----------------hhHHHHH
Q 045672 285 GLALLELGTQVHVHVLK-YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ---KDV----------------ISWSTMI 344 (643)
Q Consensus 285 ~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~---~~~----------------~~~~~li 344 (643)
..|.++.+.+.+..... .......+..+...|.+.|++++|...|++... .+. ..|..+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 95 (198)
T 2fbn_A 16 NLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLA 95 (198)
T ss_dssp ------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHH
Confidence 34444544444443333 222344556677778888888888888887632 122 5677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCH
Q 045672 345 SGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKL 424 (643)
Q Consensus 345 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 424 (643)
.+|.+.|++++|+..+++..... +.+...+..+..++...|++++|...|+...+. .+.+...+..+..++...++.
T Consensus 96 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~ 172 (198)
T 2fbn_A 96 TCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSYELCVNKLKEA 172 (198)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHHHH
Confidence 78888888888888888877642 334566777777778888888888888877663 223455666666666666665
Q ss_pred HHHH
Q 045672 425 QEAV 428 (643)
Q Consensus 425 ~~A~ 428 (643)
+++.
T Consensus 173 ~~~~ 176 (198)
T 2fbn_A 173 RKKD 176 (198)
T ss_dssp HC--
T ss_pred HHHH
Confidence 5554
No 181
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.90 E-value=0.00021 Score=73.58 Aligned_cols=192 Identities=11% Similarity=-0.002 Sum_probs=108.9
Q ss_pred HHHHHHcCCHHHHHHHHhhCCCC-----Cc---------------chHHHHHHHHHhCCChhHHHHHHHHHHHcC-CCCC
Q 045672 214 IDIYAKLGELRNAECVFNEMPTR-----DL---------------VVWNSIIGGFAQNSDVDEALNLYKRMKRAG-FAAD 272 (643)
Q Consensus 214 i~~y~~~g~~~~A~~~f~~~~~~-----~~---------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~ 272 (643)
...+.+.|++++|.+.|.++.+. +. .++..+...|...|++++|.+++.++...- ..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 34556677777777777665321 10 125566667777777777777766654421 0111
Q ss_pred HHHHHHHHHHHhcCChhHhHHHHHHHHhhcCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCC--------C-ChhhHHHH
Q 045672 273 QSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ--------K-DVISWSTM 343 (643)
Q Consensus 273 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~--------~-~~~~~~~l 343 (643)
..+.. .+.+.+...+...|+.+.|..++..... . -..++..+
T Consensus 91 ~~~~~-----------------------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l 141 (434)
T 4b4t_Q 91 SKTVK-----------------------------VLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKL 141 (434)
T ss_dssp HHHHH-----------------------------HHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHH
T ss_pred hHHHH-----------------------------HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 11110 1112233333345555555555554411 1 12356667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC--C--CCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcC-C--CCC--hHHHHH
Q 045672 344 ISGLAQNGYSQEALKLFESMKVS--R--IKPN-YITIVGVLFACSHAGFVEDGWNHFKSMKKFYG-I--DPG--REHYSC 413 (643)
Q Consensus 344 i~~~~~~g~~~~A~~l~~~m~~~--g--~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-~--~p~--~~~~~~ 413 (643)
...|...|++++|+.++++.... + -+|. ..++..++..|...|++++|..+++....... + +|. ...+..
T Consensus 142 a~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 221 (434)
T 4b4t_Q 142 ATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLM 221 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred HHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHH
Confidence 77778888888888887776432 1 1222 34666777788888888888888877654211 1 111 235666
Q ss_pred HHHHHHhcCCHHHHHHHHHhC
Q 045672 414 MIDLLGRAGKLQEAVKLIHEM 434 (643)
Q Consensus 414 li~~~~~~g~~~~A~~~~~~m 434 (643)
+...+...|++++|...|.+.
T Consensus 222 ~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 222 SGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHH
Confidence 677777888888887766544
No 182
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.90 E-value=0.00017 Score=60.06 Aligned_cols=104 Identities=10% Similarity=-0.020 Sum_probs=58.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHH
Q 045672 338 ISWSTMISGLAQNGYSQEALKLFESMKVSRIKPN-YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPG-REHYSCMI 415 (643)
Q Consensus 338 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li 415 (643)
..+..+...+.+.|++++|++.|++.++. .|+ ...|..+..+|.+.|++++|++.++...+. .|+ ...+..+
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~- 82 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEV---GRETRADYKLI- 82 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HHHTTCCHHHH-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHh---CcccchhhHHH-
Confidence 34556666666666666666666666653 333 455555666666666666666666655441 111 0001000
Q ss_pred HHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 045672 416 DLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDP 471 (643)
Q Consensus 416 ~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 471 (643)
..+|..+..++...|++++|+..+++.++..|
T Consensus 83 ------------------------a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~ 114 (127)
T 4gcn_A 83 ------------------------AKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFR 114 (127)
T ss_dssp ------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred ------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 12344455566677777777777777777666
No 183
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.88 E-value=0.00014 Score=75.55 Aligned_cols=124 Identities=10% Similarity=-0.019 Sum_probs=91.5
Q ss_pred HhccCCHHHHHHHHHHhHHhcC--CCC----ChHHHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCCHH-HHHH
Q 045672 382 CSHAGFVEDGWNHFKSMKKFYG--IDP----GREHYSCMIDLLGRAGKLQEAVKLIHEM---------PYEPDAV-TWRA 445 (643)
Q Consensus 382 ~~~~g~~~~a~~~~~~~~~~~~--~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~~~-~~~~ 445 (643)
+...|++++|..++++..+... +.| ...+++.|..+|...|++++|..++++. +..|++. +++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4466777777777766654211 112 2346778888888888888888877665 2345543 6888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHh-----cCCCCcch---HHHHHHHHHccCChhHHHHHHHHHHhCCC
Q 045672 446 LLGACKVHRNTDLAICAAKKILN-----LDPQDPGT---YILLSNIYANSQKWDEVAEVRKTMRARGI 505 (643)
Q Consensus 446 ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 505 (643)
|...|...|++++|+.+++++++ ++|++|.+ ...|..++...|++++|..++.+++++..
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~ 466 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAAL 466 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88889999999999999999886 46776654 45778888899999999999999987543
No 184
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.87 E-value=7.7e-05 Score=61.52 Aligned_cols=94 Identities=14% Similarity=0.070 Sum_probs=53.7
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC
Q 045672 378 VLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRN 455 (643)
Q Consensus 378 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~ 455 (643)
+...+.+.|++++|...|+...+. -+.+...+..+..++.+.|++++|+..+++. ...| +...|..+...+...|+
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 334455556666666666665552 1224555556666666666666666666555 2233 44566666667777777
Q ss_pred HHHHHHHHHHHHhcCCCC
Q 045672 456 TDLAICAAKKILNLDPQD 473 (643)
Q Consensus 456 ~~~a~~~~~~~~~~~p~~ 473 (643)
+++|+..++++++.+|++
T Consensus 101 ~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 101 ANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHhCcCC
Confidence 777777777777777754
No 185
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.85 E-value=8.9e-05 Score=74.64 Aligned_cols=137 Identities=12% Similarity=0.039 Sum_probs=102.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHH
Q 045672 337 VISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDP-GREHYSCMI 415 (643)
Q Consensus 337 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li 415 (643)
...|..+...+.+.|++++|++.|++.++. .|+.. .....+ ...+ ..| +...|..+.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~~-------~~~~---~~~~~~~~~~nla 280 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAEDA-------DGAK---LQPVALSCVLNIG 280 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCHH-------HHGG---GHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccChH-------HHHH---HHHHHHHHHHHHH
Confidence 345777788888888888888888887652 11100 000111 1111 112 356788888
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHH
Q 045672 416 DLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEV 493 (643)
Q Consensus 416 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 493 (643)
.+|.+.|++++|.+.+++. ...| +...|..+..++...|++++|+..++++++++|++...+..+..++...++.+++
T Consensus 281 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 281 ACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999887 4555 5668888889999999999999999999999999999999999999988888777
Q ss_pred HH
Q 045672 494 AE 495 (643)
Q Consensus 494 ~~ 495 (643)
.+
T Consensus 361 ~k 362 (370)
T 1ihg_A 361 EK 362 (370)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 186
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.85 E-value=4.1e-05 Score=65.55 Aligned_cols=69 Identities=14% Similarity=0.099 Sum_probs=51.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCCHH-HH----HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcch
Q 045672 410 HYSCMIDLLGRAGKLQEAVKLIHEM--------PYEPDAV-TW----RALLGACKVHRNTDLAICAAKKILNLDPQDPGT 476 (643)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~~~-~~----~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 476 (643)
.|..+..++.+.|++++|+..+++. ++.|+.. .| .....++...|++++|+..|+++++++|++...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 5555556666666666666555544 3377654 78 888899999999999999999999999988755
Q ss_pred HH
Q 045672 477 YI 478 (643)
Q Consensus 477 ~~ 478 (643)
+.
T Consensus 139 ~~ 140 (159)
T 2hr2_A 139 TP 140 (159)
T ss_dssp CT
T ss_pred HH
Confidence 43
No 187
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.84 E-value=8.9e-05 Score=64.06 Aligned_cols=131 Identities=13% Similarity=0.005 Sum_probs=67.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----hHH
Q 045672 340 WSTMISGLAQNGYSQEALKLFESMKVSRI-KPN----YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPG----REH 410 (643)
Q Consensus 340 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~ 410 (643)
+..+...|...|++++|+..+++..+... .++ ..++..+...+...|++++|...++...+...-.++ ...
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 34444444455555555555544432110 011 123444445555555555555555554432111111 234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 045672 411 YSCMIDLLGRAGKLQEAVKLIHEM-------PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLD 470 (643)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m-------~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 470 (643)
+..+...+...|++++|.+.+++. +..+ ....+..+...+...|++++|...+++++++.
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 555566666666666666666544 1111 12345566677788888888888888877653
No 188
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.83 E-value=4.4e-05 Score=75.96 Aligned_cols=147 Identities=14% Similarity=-0.009 Sum_probs=79.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 045672 337 VISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMID 416 (643)
Q Consensus 337 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 416 (643)
...|..+...+.+.|++++|+..|++.... .|+... +...|+.+++...+ . ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~--------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K--------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H--------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H--------HHHHHHHHH
Confidence 345677777788888888999888887763 455432 22333444433222 1 136777888
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH-HccCChhHH
Q 045672 417 LLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIY-ANSQKWDEV 493 (643)
Q Consensus 417 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~a 493 (643)
+|.+.|++++|.+.+++. ...| +...|..+..++...|++++|+..++++++++|+++.++..|..+. ...+..+++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999998888876 3334 5678888888899999999999999999999998888888888774 455677788
Q ss_pred HHHHHHHHhC
Q 045672 494 AEVRKTMRAR 503 (643)
Q Consensus 494 ~~~~~~m~~~ 503 (643)
..+++.|...
T Consensus 319 ~~~~~~~l~~ 328 (338)
T 2if4_A 319 KEMYKGIFKG 328 (338)
T ss_dssp ----------
T ss_pred HHHHHHhhCC
Confidence 8888877654
No 189
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.79 E-value=7.7e-05 Score=65.15 Aligned_cols=128 Identities=15% Similarity=-0.004 Sum_probs=82.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 045672 337 VISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMID 416 (643)
Q Consensus 337 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 416 (643)
...|......+.+.|++++|+..|++.+.. +............. ...+ .+.+...|..+..
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~------------~~~~~~~~~~~~~~--~~~~-----~~~~~~~~~nla~ 71 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTR------------LDTLILREKPGEPE--WVEL-----DRKNIPLYANMSQ 71 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------HHHHHHTSCTTSHH--HHHH-----HHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------------HHHhcccCCCCHHH--HHHH-----HHHHHHHHHHHHH
Confidence 345666667777777777777777776542 00000000000000 0000 0123456778888
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc-chHHHHHHH
Q 045672 417 LLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDP-GTYILLSNI 483 (643)
Q Consensus 417 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~ 483 (643)
+|.+.|++++|...+++. ...| +...|..+..++...|++++|+..++++++++|+++ .....+..+
T Consensus 72 ~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 72 CYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 888999999999888776 3334 566888888999999999999999999999999887 444444433
No 190
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.77 E-value=2.9e-05 Score=63.63 Aligned_cols=92 Identities=11% Similarity=-0.000 Sum_probs=59.6
Q ss_pred cCCHHHHHHHHHHhHHhcC--CCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHH
Q 045672 385 AGFVEDGWNHFKSMKKFYG--IDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAI 460 (643)
Q Consensus 385 ~g~~~~a~~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~ 460 (643)
.|++++|+..|++..+. + -+.+...+..+...|.+.|++++|.+.|++. ...| +...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 45566666666666541 1 1223455666777777777777777777766 2233 4556777777788888888888
Q ss_pred HHHHHHHhcCCCCcchH
Q 045672 461 CAAKKILNLDPQDPGTY 477 (643)
Q Consensus 461 ~~~~~~~~~~p~~~~~~ 477 (643)
..++++++..|+++...
T Consensus 82 ~~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHhCCCcHHHH
Confidence 88888888888776543
No 191
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.76 E-value=0.0015 Score=69.58 Aligned_cols=171 Identities=10% Similarity=0.025 Sum_probs=133.2
Q ss_pred cCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 045672 319 CGSLEDAMSVFSRMIQ---KDVISWSTMISGLAQNGY----------SQEALKLFESMKVSRIKPNYITIVGVLFACSHA 385 (643)
Q Consensus 319 ~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 385 (643)
...-++|.+.++.+.. .+...|+.--..+...|+ ++++++.++++.+.. +-+..+|..-...+.+.
T Consensus 42 ~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 42 GELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 3345677888887743 345577776666666666 899999999998753 23467777777778888
Q ss_pred C--CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcC-CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc-------
Q 045672 386 G--FVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAG-KLQEAVKLIHEM-PYEP-DAVTWRALLGACKVH------- 453 (643)
Q Consensus 386 g--~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~------- 453 (643)
| +++++.+.++++.+. -+-+...|+.-.-.+.+.| .++++++.++++ ...| |...|+.....+...
T Consensus 121 ~~~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 121 PEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 8 679999999999884 3446777777777788888 899999999888 4444 677888877776553
Q ss_pred -------CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhH
Q 045672 454 -------RNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDE 492 (643)
Q Consensus 454 -------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 492 (643)
+.++++++.+.+++..+|++..+|..+..++.+.++.++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 557999999999999999999999999999999988655
No 192
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.76 E-value=0.00012 Score=58.03 Aligned_cols=65 Identities=23% Similarity=0.293 Sum_probs=60.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhC
Q 045672 439 DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 439 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 503 (643)
+...|..+...+...|++++|+..++++++.+|+++.+|..++.+|...|++++|.+.+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 56788889999999999999999999999999999999999999999999999999999988753
No 193
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.75 E-value=6.4e-05 Score=60.52 Aligned_cols=92 Identities=14% Similarity=-0.012 Sum_probs=73.7
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------cchHH
Q 045672 407 GREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQD------PGTYI 478 (643)
Q Consensus 407 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 478 (643)
+...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 3456777788888888888888888776 2333 56788888888999999999999999999999988 67788
Q ss_pred HHHHHHHccCChhHHHHHHH
Q 045672 479 LLSNIYANSQKWDEVAEVRK 498 (643)
Q Consensus 479 ~l~~~~~~~g~~~~a~~~~~ 498 (643)
.++.++...|+.++|.+.++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHH
Confidence 88888888887777665443
No 194
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.75 E-value=6.9e-05 Score=74.53 Aligned_cols=152 Identities=12% Similarity=-0.014 Sum_probs=82.5
Q ss_pred hhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 045672 306 LILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHA 385 (643)
Q Consensus 306 ~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 385 (643)
...+..+...|.+.|++++|...|++....+.... .+...|+.+++...+. ...+..+..++.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 44567788889999999999999998743221111 1223344444443321 13677788888999
Q ss_pred CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHH-HHHcCCHHHHHHH
Q 045672 386 GFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEPDAV-TWRALLGA-CKVHRNTDLAICA 462 (643)
Q Consensus 386 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~~-~~~~g~~~~a~~~ 462 (643)
|++++|+..++...+. .+.+...|..+..+|...|++++|.+.|++. ...|+.. .+..+... ....+..+.+...
T Consensus 244 g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~ 321 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEM 321 (338)
T ss_dssp TCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998873 2346778889999999999999999999987 4556443 44444444 3455678888999
Q ss_pred HHHHHhcCCCCc
Q 045672 463 AKKILNLDPQDP 474 (643)
Q Consensus 463 ~~~~~~~~p~~~ 474 (643)
++++++..|.++
T Consensus 322 ~~~~l~~~p~~~ 333 (338)
T 2if4_A 322 YKGIFKGKDEGG 333 (338)
T ss_dssp ------------
T ss_pred HHHhhCCCCCCC
Confidence 999999888764
No 195
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.70 E-value=0.00018 Score=55.36 Aligned_cols=81 Identities=23% Similarity=0.292 Sum_probs=63.2
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 045672 408 REHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYA 485 (643)
Q Consensus 408 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 485 (643)
...+..+...+.+.|++++|.+.+++. ...| +...|..+...+...|++++|+..++++++.+|+++.++..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 445666777778888888888887766 2223 56677788888889999999999999999999998888888888876
Q ss_pred ccC
Q 045672 486 NSQ 488 (643)
Q Consensus 486 ~~g 488 (643)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
No 196
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.67 E-value=0.00016 Score=75.24 Aligned_cols=115 Identities=11% Similarity=-0.014 Sum_probs=88.4
Q ss_pred HHHhcCCHHHHHHHHHhC---------CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh-----cCCCCc---chHH
Q 045672 417 LLGRAGKLQEAVKLIHEM---------PYEPDA-VTWRALLGACKVHRNTDLAICAAKKILN-----LDPQDP---GTYI 478 (643)
Q Consensus 417 ~~~~~g~~~~A~~~~~~m---------~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~~~ 478 (643)
.+..+|++++|+.++++. +..|+. .+++.|..+|...|++++|+.+++++++ ++|++| .++.
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 456789999999988765 223443 3788999999999999999999999986 356654 4678
Q ss_pred HHHHHHHccCChhHHHHHHHHHHhCCCCcCCceeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHh
Q 045672 479 LLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVG 549 (643)
Q Consensus 479 ~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~~~~ 549 (643)
.|+.+|..+|++++|..++++..+.-.. .-+..||...++...+.+...+++.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~~ 450 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLV------------------THGPSHPITKDLEAMRMQTEMELRM 450 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHH------------------HhCCCChHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999988753111 1234699999888777766655543
No 197
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.59 E-value=0.00024 Score=57.68 Aligned_cols=77 Identities=13% Similarity=0.109 Sum_probs=63.4
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhC
Q 045672 427 AVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 427 A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 503 (643)
|.+.|++. ...| +...|..+...+...|++++|+..++++++.+|+++.++..++.+|...|++++|...+++..+.
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44445444 3334 56678888888999999999999999999999999999999999999999999999999988753
No 198
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.58 E-value=0.00044 Score=71.86 Aligned_cols=95 Identities=12% Similarity=0.015 Sum_probs=74.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 045672 410 HYSCMIDLLGRAGKLQEAVKLIHEM-PYEPD----------------AVTWRALLGACKVHRNTDLAICAAKKILNLDPQ 472 (643)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 472 (643)
.+..+...|.+.|++++|...|++. ...|+ ...|..+..++.+.|++++|+..++++++++|+
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 349 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA 349 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Confidence 3444455555555555555555544 11111 467888889999999999999999999999999
Q ss_pred CcchHHHHHHHHHccCChhHHHHHHHHHHhCC
Q 045672 473 DPGTYILLSNIYANSQKWDEVAEVRKTMRARG 504 (643)
Q Consensus 473 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 504 (643)
++.+|..++.+|...|++++|...+++..+..
T Consensus 350 ~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~ 381 (457)
T 1kt0_A 350 NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381 (457)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999998743
No 199
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.58 E-value=0.00026 Score=72.48 Aligned_cols=116 Identities=9% Similarity=0.066 Sum_probs=86.2
Q ss_pred HHHHHhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----cCCCCc---ch
Q 045672 415 IDLLGRAGKLQEAVKLIHEM---------PYEPD-AVTWRALLGACKVHRNTDLAICAAKKILN-----LDPQDP---GT 476 (643)
Q Consensus 415 i~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~ 476 (643)
+..+.+.|++++|++++++. +..|+ ..+++.+..+|...|++++|+.+++++++ ++|++| .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 34455677888888877655 11222 23678888889999999999999998886 345554 46
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHhCCCCcCCceeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHH
Q 045672 477 YILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLV 548 (643)
Q Consensus 477 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~~~ 548 (643)
+..|+.+|...|++++|..++++..+.-.. .-+..||...+++..|.+...+|+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRV------------------THGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHH------------------hcCCCChHHHHHHHHHHHHHHHHh
Confidence 888999999999999999999988752110 223469999999888888877765
No 200
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.45 E-value=0.00067 Score=52.58 Aligned_cols=69 Identities=16% Similarity=0.084 Sum_probs=60.2
Q ss_pred CCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCC
Q 045672 438 PDAVTWRALLGACKVHRN---TDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGIT 506 (643)
Q Consensus 438 p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 506 (643)
+|...+..+..++...++ .++|..+++++++.+|+++.+...++..+.+.|++++|...|+++.+....
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 466778888887655544 799999999999999999999999999999999999999999999986543
No 201
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.44 E-value=0.0001 Score=62.97 Aligned_cols=85 Identities=15% Similarity=0.129 Sum_probs=62.1
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhcCCCCcchHHHHHHHHHcc
Q 045672 420 RAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRN----------TDLAICAAKKILNLDPQDPGTYILLSNIYANS 487 (643)
Q Consensus 420 ~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 487 (643)
|.+++++|.+.+++. ...| +...|..+..++...++ +++|+..|+++++++|++..+|..++++|...
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 344555555555544 2223 44455555555544443 57999999999999999999999999999987
Q ss_pred C-----------ChhHHHHHHHHHHhCC
Q 045672 488 Q-----------KWDEVAEVRKTMRARG 504 (643)
Q Consensus 488 g-----------~~~~a~~~~~~m~~~g 504 (643)
| ++++|.+.|++..+..
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 5 8999999999998743
No 202
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.43 E-value=0.001 Score=66.80 Aligned_cols=117 Identities=8% Similarity=0.029 Sum_probs=73.6
Q ss_pred HhHHHHHHHhcCCHHHHHHHHhhcCC-------------------CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 045672 309 NNALLDMYCKCGSLEDAMSVFSRMIQ-------------------KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIK 369 (643)
Q Consensus 309 ~~~Li~~y~~~g~~~~A~~~~~~m~~-------------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 369 (643)
+..+...|.+.|++++|...|++..+ .+...|..+..+|.+.|++++|++.+++.++. .
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~--~ 303 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI--D 303 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--C
Confidence 34455566666666666666655432 13456677777777777777777777777763 3
Q ss_pred C-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHH
Q 045672 370 P-NYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVK 429 (643)
Q Consensus 370 p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 429 (643)
| +...+..+..++...|++++|...|+++.+. .+.+...+..+..++.+.++.+++.+
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 3556666777777777777777777777653 12245555566666666666655543
No 203
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.41 E-value=0.00025 Score=72.44 Aligned_cols=102 Identities=14% Similarity=0.131 Sum_probs=73.7
Q ss_pred cCCHHHHHHHHHhC---------CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh-----cCCCCc---chHHHHHH
Q 045672 421 AGKLQEAVKLIHEM---------PYEPDA-VTWRALLGACKVHRNTDLAICAAKKILN-----LDPQDP---GTYILLSN 482 (643)
Q Consensus 421 ~g~~~~A~~~~~~m---------~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~~~~l~~ 482 (643)
.|++++|..++++. +..|+. .+++.|..+|...|++++|+.+++++++ ++|++| .+|..|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 46677777766554 223443 3688888889999999999999999886 355554 46889999
Q ss_pred HHHccCChhHHHHHHHHHHhCCCCcCCceeEEEECCEEEEEEeCCCCCcchHHHHHHH
Q 045672 483 IYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHL 540 (643)
Q Consensus 483 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l 540 (643)
+|..+|++++|..++++..+.-.. .-+..||...++...|
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~l~~~l 430 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEV------------------AHGKDHPYISEIKQEI 430 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTCHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHH------------------HcCCCChHHHHHHHHH
Confidence 999999999999999988753211 1234688887776544
No 204
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.37 E-value=0.00051 Score=55.02 Aligned_cols=66 Identities=8% Similarity=0.001 Sum_probs=61.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCC
Q 045672 439 DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARG 504 (643)
Q Consensus 439 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 504 (643)
+...|..+...+...|++++|+..++++++..|+++.++..++.+|...|++++|.+.+++..+..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 456788888899999999999999999999999999999999999999999999999999998643
No 205
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.23 E-value=0.0034 Score=52.85 Aligned_cols=50 Identities=12% Similarity=0.053 Sum_probs=30.8
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHc----cCChhHHHHHHHHHHhCC
Q 045672 453 HRNTDLAICAAKKILNLDPQDPGTYILLSNIYAN----SQKWDEVAEVRKTMRARG 504 (643)
Q Consensus 453 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g 504 (643)
.+++++|...++++.+. .++.++..|+.+|.. .+++++|.+.+++..+.|
T Consensus 74 ~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 74 KKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp CCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred CccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 45566666666665554 344566666666666 666666766666666655
No 206
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.19 E-value=0.0012 Score=50.53 Aligned_cols=64 Identities=28% Similarity=0.333 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhC
Q 045672 440 AVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 440 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 503 (643)
...|..+...+...|++++|+..++++++..|+++.++..++.+|...|++++|.+.+++..+.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4567778888999999999999999999999999999999999999999999999999998864
No 207
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.10 E-value=0.0081 Score=63.91 Aligned_cols=150 Identities=9% Similarity=0.016 Sum_probs=119.1
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCC----------HHHHHHHHHHhHHhcCCCCChHHHHHHHHHH
Q 045672 350 NGYSQEALKLFESMKVSRIKPN-YITIVGVLFACSHAGF----------VEDGWNHFKSMKKFYGIDPGREHYSCMIDLL 418 (643)
Q Consensus 350 ~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~----------~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 418 (643)
....++|++.++++... .|+ ...|+.--.++.+.|+ ++++.+.++.+.+. .+-+...|..-.-++
T Consensus 42 ~~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l 117 (567)
T 1dce_A 42 GELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLL 117 (567)
T ss_dssp TCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 34557889999999884 566 4455555555555566 89999999999884 344667777777788
Q ss_pred HhcC--CHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHcc------
Q 045672 419 GRAG--KLQEAVKLIHEM-PYE-PDAVTWRALLGACKVHR-NTDLAICAAKKILNLDPQDPGTYILLSNIYANS------ 487 (643)
Q Consensus 419 ~~~g--~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~------ 487 (643)
.+.| +++++++.++++ ... .+...|+--.......| .++++++.++++++.+|.|..+|...+.++.+.
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred HHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence 8889 779999999998 333 47788998888888888 899999999999999999999999999988774
Q ss_pred --------CChhHHHHHHHHHHhC
Q 045672 488 --------QKWDEVAEVRKTMRAR 503 (643)
Q Consensus 488 --------g~~~~a~~~~~~m~~~ 503 (643)
++++++.+.+++....
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~ 221 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFT 221 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHHHHhh
Confidence 5678888888777653
No 208
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.08 E-value=0.0089 Score=50.21 Aligned_cols=112 Identities=9% Similarity=-0.048 Sum_probs=90.3
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHh----cCCHHH
Q 045672 351 GYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGR----AGKLQE 426 (643)
Q Consensus 351 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~ 426 (643)
+++++|++.|++..+.| .|+.. +...|...+.+++|.+.|++..+. -+...+..|..+|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46789999999998887 44444 666677778888999999998873 466778888888888 889999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCC
Q 045672 427 AVKLIHEMPYEPDAVTWRALLGACKV----HRNTDLAICAAKKILNLDP 471 (643)
Q Consensus 427 A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p 471 (643)
|.+.|++.-...+...+..|...|.. .++.++|...++++.+.+.
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999888434577788888888887 8899999999999988754
No 209
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.07 E-value=0.0024 Score=51.63 Aligned_cols=80 Identities=11% Similarity=0.025 Sum_probs=49.7
Q ss_pred HHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 045672 391 GWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILN 468 (643)
Q Consensus 391 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 468 (643)
+...|+...+. .+.+...+..+...|.+.|++++|.+.+++. ...| +...|..+...+...|++++|...++++++
T Consensus 4 a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44455555441 2234556666666666777777777666655 2223 455666777777777777777777777777
Q ss_pred cCCC
Q 045672 469 LDPQ 472 (643)
Q Consensus 469 ~~p~ 472 (643)
+.|.
T Consensus 82 ~~~~ 85 (115)
T 2kat_A 82 AAQS 85 (115)
T ss_dssp HHHH
T ss_pred hccc
Confidence 6654
No 210
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.05 E-value=0.00041 Score=59.22 Aligned_cols=50 Identities=22% Similarity=0.249 Sum_probs=32.5
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHhcCCCCc
Q 045672 425 QEAVKLIHEM-PYEP-DAVTWRALLGACKVH-----------RNTDLAICAAKKILNLDPQDP 474 (643)
Q Consensus 425 ~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~ 474 (643)
++|+..|++. .+.| +...|..+..+|... |++++|+..|+++++++|++.
T Consensus 63 ~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 63 QEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 3444444444 2333 233455555555444 589999999999999999875
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.00 E-value=0.015 Score=57.03 Aligned_cols=47 Identities=11% Similarity=0.044 Sum_probs=30.1
Q ss_pred CCChhhHHHHHHHHH--hcC---CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 045672 334 QKDVISWSTMISGLA--QNG---YSQEALKLFESMKVSRIKPN-YITIVGVLFAC 382 (643)
Q Consensus 334 ~~~~~~~~~li~~~~--~~g---~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~ 382 (643)
..+...|...+.+.. ..+ ...+|+.+|++.++. .|+ ...+..+..++
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~ 243 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVD 243 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 346778887776643 333 347899999999884 676 34555444444
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.89 E-value=0.0058 Score=62.36 Aligned_cols=94 Identities=12% Similarity=0.005 Sum_probs=64.6
Q ss_pred ccCCHHHHHHHHHHhHHhc--CCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCCHH-HHHHHH
Q 045672 384 HAGFVEDGWNHFKSMKKFY--GIDPG----REHYSCMIDLLGRAGKLQEAVKLIHEM---------PYEPDAV-TWRALL 447 (643)
Q Consensus 384 ~~g~~~~a~~~~~~~~~~~--~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~~~-~~~~ll 447 (643)
+.|++++|..++++..+.. -+.|+ ..+++.|..+|...|++++|+.++++. +..|++. +++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 3466777777666654421 11222 346777778888888888888777665 2345544 688888
Q ss_pred HHHHHcCCHHHHHHHHHHHHh-----cCCCCcchH
Q 045672 448 GACKVHRNTDLAICAAKKILN-----LDPQDPGTY 477 (643)
Q Consensus 448 ~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~ 477 (643)
..|...|++++|+.+++++++ ++|++|.+-
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 889999999999999999876 468777543
No 213
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.84 E-value=0.068 Score=43.23 Aligned_cols=141 Identities=10% Similarity=0.078 Sum_probs=100.2
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHH
Q 045672 347 LAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQE 426 (643)
Q Consensus 347 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 426 (643)
+.-.|..++..++..+...+ .+..-++.++.-....-+-+-..++++.+-+-+.+. .+|++..
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis--------------~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcH--------------hhhcHHH
Confidence 34467777888888877653 345556666655555556666666666665533332 3555555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCC
Q 045672 427 AVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGIT 506 (643)
Q Consensus 427 A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 506 (643)
...-+-.++ .+.......++.....|.-+.-.+++..++.-.|.++....-++++|.+.|+..+|.+++.+.-++|++
T Consensus 80 Vi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 80 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 555555553 244455666778888999999999999977777778899999999999999999999999999999975
No 214
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.77 E-value=0.011 Score=60.50 Aligned_cols=98 Identities=10% Similarity=-0.102 Sum_probs=60.8
Q ss_pred HhccCCHHHHHHHHHHhHHhc--CCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCCHH-HHHH
Q 045672 382 CSHAGFVEDGWNHFKSMKKFY--GIDPG----REHYSCMIDLLGRAGKLQEAVKLIHEM---------PYEPDAV-TWRA 445 (643)
Q Consensus 382 ~~~~g~~~~a~~~~~~~~~~~--~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~~~-~~~~ 445 (643)
+...|++++|..++++..+.. -+.|+ ..+++.|...|...|++++|+.+++++ +..|+.. +++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 344556666666665554321 11121 335666666677777777776666554 2334443 6777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHh-----cCCCCcchHHH
Q 045672 446 LLGACKVHRNTDLAICAAKKILN-----LDPQDPGTYIL 479 (643)
Q Consensus 446 ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~~~ 479 (643)
|...|...|++++|+.+++++++ ++|++|.+-..
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~ 415 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL 415 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 88888888888888888888875 47887755443
No 215
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.74 E-value=0.0034 Score=48.91 Aligned_cols=53 Identities=17% Similarity=0.317 Sum_probs=25.6
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCcc-hHHHHHHHHHccCChhHHHHHHHHHHh
Q 045672 450 CKVHRNTDLAICAAKKILNLDPQDPG-TYILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 450 ~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
+...|++++|+..++++++.+|+++. .+..++.+|...|++++|.+.+++..+
T Consensus 10 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 10 LINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 33444444444445444444444444 444444444444555555444444443
No 216
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.71 E-value=0.0074 Score=47.30 Aligned_cols=64 Identities=13% Similarity=0.073 Sum_probs=34.3
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 045672 336 DVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKK 400 (643)
Q Consensus 336 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 400 (643)
+...|..+...|.+.|++++|+..|++..+.. +.+...+..+..++...|++++|.+.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34455555555556666666666666555532 11234455555555566666666655555543
No 217
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.70 E-value=0.0084 Score=46.60 Aligned_cols=64 Identities=19% Similarity=0.292 Sum_probs=50.9
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchH
Q 045672 414 MIDLLGRAGKLQEAVKLIHEM-PYEP-DAV-TWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTY 477 (643)
Q Consensus 414 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 477 (643)
....+.+.|++++|.+.+++. ...| +.. .|..+...+...|++++|+..++++++++|+++.++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 355677888888888888776 2334 456 778888888999999999999999999999887766
No 218
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.55 E-value=0.014 Score=49.18 Aligned_cols=65 Identities=6% Similarity=-0.018 Sum_probs=50.5
Q ss_pred CCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcC-C-CCcchHHHHHHHHHccCChhHHHHHHHHHHh
Q 045672 438 PDAVTWRALLGACKVHR---NTDLAICAAKKILNLD-P-QDPGTYILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 438 p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
++..+.-.+..++.+.+ +.++|+.+++++++.+ | ++...+..|+-+|.+.|++++|+++++.+.+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 56666666777777766 5668888888888877 6 3566788888888888888888888888876
No 219
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.44 E-value=0.12 Score=57.81 Aligned_cols=100 Identities=14% Similarity=0.126 Sum_probs=69.1
Q ss_pred HHcCCChhHHHH-HHccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHHHHHHH
Q 045672 119 HVKFSLLEEAQV-LFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCG 197 (643)
Q Consensus 119 ~~~~g~~~~A~~-~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~ 197 (643)
....+++++|.+ ++..++. ......++..+.+.|.+++|+++.+.-..
T Consensus 609 ~~~~~~~~~a~~~~l~~i~~--~~~~~~~~~~l~~~~~~~~a~~~~~~~~~----------------------------- 657 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPNVEG--KDSLTKIARFLEGQEYYEEALNISPDQDQ----------------------------- 657 (814)
T ss_dssp HHHTTCHHHHHHHTGGGCCC--HHHHHHHHHHHHHTTCHHHHHHHCCCHHH-----------------------------
T ss_pred HHHhCCHHHHHHHHHhcCCc--hHHHHHHHHHHHhCCChHHheecCCCcch-----------------------------
Confidence 345677888877 6655441 11236667777777888777765532110
Q ss_pred HHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHH
Q 045672 198 IIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKR 266 (643)
Q Consensus 198 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 266 (643)
-......+|++++|.++.+.+. +...|..+...+.+.|+++.|.+.|.++..
T Consensus 658 ---------------~f~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d 709 (814)
T 3mkq_A 658 ---------------KFELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD 709 (814)
T ss_dssp ---------------HHHHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred ---------------heehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC
Confidence 1233466899999999987774 467899999999999999999999987743
No 220
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.41 E-value=0.11 Score=58.02 Aligned_cols=101 Identities=17% Similarity=0.145 Sum_probs=63.1
Q ss_pred HHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 045672 316 YCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHF 395 (643)
Q Consensus 316 y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 395 (643)
...+|+++.|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.. |..+...+...|+.+...++-
T Consensus 662 ~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~ 730 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLA 730 (814)
T ss_dssp HHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHH
Confidence 456788888888876663 456788888888888888888888887653 233444444456666554444
Q ss_pred HHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 045672 396 KSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM 434 (643)
Q Consensus 396 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 434 (643)
+..... | .++.-..+|.+.|++++|.+++.++
T Consensus 731 ~~a~~~-~------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 731 KDAETT-G------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHc-C------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 433331 1 1333444566667777776666554
No 221
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.84 E-value=0.03 Score=52.56 Aligned_cols=86 Identities=14% Similarity=0.149 Sum_probs=67.2
Q ss_pred HHHHHHHHHhC-CCCCC---HHHHHHHHHHHHH-----cCCHHHHHHHHHHHHhcCCCC-cchHHHHHHHHHcc-CChhH
Q 045672 424 LQEAVKLIHEM-PYEPD---AVTWRALLGACKV-----HRNTDLAICAAKKILNLDPQD-PGTYILLSNIYANS-QKWDE 492 (643)
Q Consensus 424 ~~~A~~~~~~m-~~~p~---~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 492 (643)
..+|..++++. .+.|+ -..|..|...|.. -|+.++|++.|++++++.|+. ..+++..+..++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 34455555544 44565 4467777777777 499999999999999999974 99999999999885 99999
Q ss_pred HHHHHHHHHhCCCCcCC
Q 045672 493 VAEVRKTMRARGITKEP 509 (643)
Q Consensus 493 a~~~~~~m~~~g~~~~~ 509 (643)
+.+.+++.........|
T Consensus 259 a~~~L~kAL~a~p~~~P 275 (301)
T 3u64_A 259 FDEALDRALAIDPESVP 275 (301)
T ss_dssp HHHHHHHHHHCCGGGCS
T ss_pred HHHHHHHHHcCCCCCCC
Confidence 99999999986655435
No 222
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.74 E-value=0.069 Score=42.00 Aligned_cols=73 Identities=16% Similarity=0.061 Sum_probs=52.5
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhC-----C----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHH
Q 045672 408 REHYSCMIDLLGRAGKLQEAVKLIHEM-----P----YEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYI 478 (643)
Q Consensus 408 ~~~~~~li~~~~~~g~~~~A~~~~~~m-----~----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 478 (643)
..-+..|...+.+.|+++.|...|+.. + -.+....+..|..++.+.|+++.|...+++++++.|+++.+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 334445666666666666666666554 0 1234567888889999999999999999999999999876644
Q ss_pred HH
Q 045672 479 LL 480 (643)
Q Consensus 479 ~l 480 (643)
.+
T Consensus 85 n~ 86 (104)
T 2v5f_A 85 NL 86 (104)
T ss_dssp HH
T ss_pred hH
Confidence 44
No 223
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=95.51 E-value=0.35 Score=47.36 Aligned_cols=71 Identities=10% Similarity=0.105 Sum_probs=42.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHH
Q 045672 336 DVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY 411 (643)
Q Consensus 336 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 411 (643)
+...|.++...+...|++++|+..++++...+ |+...|..+...+.-.|+.++|.+.|++..+ +.|...+|
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr---L~P~~~t~ 346 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN---LRPGANTL 346 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSCSHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCcChH
Confidence 45556655555555667777777776666643 5655555555566666677777666666654 24554443
No 224
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=95.49 E-value=3.2 Score=44.08 Aligned_cols=246 Identities=8% Similarity=0.033 Sum_probs=119.3
Q ss_pred HHHHHHHHcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHh
Q 045672 212 ALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLEL 291 (643)
Q Consensus 212 ~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 291 (643)
.-+..+.+.+++......+.. +..+...--....+....|+..+|....+.+-..| ...+.....++..+...|.+..
T Consensus 77 ~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt~ 154 (618)
T 1qsa_A 77 RFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQDP 154 (618)
T ss_dssp HHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCCH
Confidence 345556666777776665555 32233333345555666677666666555554443 2233344455555544333222
Q ss_pred HHHHHHHH---------------hh-cCCch-hHHhHHHHHHHhcCCHHHHHHHHhhcCCCChh---hHHHHHHHHHhcC
Q 045672 292 GTQVHVHV---------------LK-YDHDL-ILNNALLDMYCKCGSLEDAMSVFSRMIQKDVI---SWSTMISGLAQNG 351 (643)
Q Consensus 292 a~~i~~~~---------------~~-~~~~~-~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~---~~~~li~~~~~~g 351 (643)
.. ++.++ .+ ++++. .....++..+.+-..+ ....... .++.. .+...+.-+++ .
T Consensus 155 ~~-~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~---~~~~~~~-~~~~~~~~~~~~~~~rlar-~ 228 (618)
T 1qsa_A 155 LA-YLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTV---LTFARTT-GATDFTRQMAAVAFASVAR-Q 228 (618)
T ss_dssp HH-HHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGH---HHHHHHS-CCCHHHHHHHHHHHHHHHH-H
T ss_pred HH-HHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhH---HHHHhcc-CCChhhHHHHHHHHHHHHh-c
Confidence 11 11111 11 11111 1122223222222222 1111111 11111 11112233333 3
Q ss_pred CHHHHHHHHHHHHHCC-CCCCHH--HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHH
Q 045672 352 YSQEALKLFESMKVSR-IKPNYI--TIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAV 428 (643)
Q Consensus 352 ~~~~A~~l~~~m~~~g-~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 428 (643)
+.+.|..+|....... +.+... ....+.......+...++...+...... .++.....-.+....+.|+++.|.
T Consensus 229 d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHHHH
Confidence 7889999998886543 322222 1222333334445345555666654432 233333444444555789999999
Q ss_pred HHHHhCCCCC-CHHHHH-HHHHHHHHcCCHHHHHHHHHHHHh
Q 045672 429 KLIHEMPYEP-DAVTWR-ALLGACKVHRNTDLAICAAKKILN 468 (643)
Q Consensus 429 ~~~~~m~~~p-~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~ 468 (643)
..|+.|+..+ +..-|. =+..+....|+.++|..+|+++.+
T Consensus 306 ~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 306 TWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 9999996432 222221 123456778999999999999875
No 225
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.45 E-value=0.38 Score=41.49 Aligned_cols=128 Identities=15% Similarity=0.153 Sum_probs=86.9
Q ss_pred HHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 045672 315 MYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNH 394 (643)
Q Consensus 315 ~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 394 (643)
....+|+++.|.++-+.+ .+...|..+......+|+++-|.+.|.+... |..+.--|.-.|+.+.-..+
T Consensus 14 LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHH
Confidence 345789999999887776 4567899999999999999999999988653 33444455667777665554
Q ss_pred HHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045672 395 FKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKI 466 (643)
Q Consensus 395 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 466 (643)
-+....+ | -++.-...+.-.|+++++.+++.+.+.-|... -....+|..+.|.++.+++
T Consensus 83 a~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~------~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 83 QNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAY------AVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHH------HHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHH------HHHHHcCcHHHHHHHHHHh
Confidence 4443332 1 24444555667899999999988876433221 1134477777777776655
No 226
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.06 E-value=0.16 Score=38.97 Aligned_cols=70 Identities=13% Similarity=0.059 Sum_probs=51.2
Q ss_pred CCChHHHHHHHHHHHhcCC---HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Q 045672 405 DPGREHYSCMIDLLGRAGK---LQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDP 474 (643)
Q Consensus 405 ~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 474 (643)
+++...+..+..++...++ .++|..++++. ...| ++..+..+...+...|++++|+..++++++.+|+++
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 3466677777777765544 67888888776 3445 455666667778889999999999999999888743
No 227
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.03 E-value=0.094 Score=44.10 Aligned_cols=35 Identities=14% Similarity=0.065 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcch
Q 045672 442 TWRALLGACKVHRNTDLAICAAKKILNLDPQDPGT 476 (643)
Q Consensus 442 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 476 (643)
.+-.|.-++.+.|++++|.+.++.+++.+|++..+
T Consensus 73 ~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 73 YVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQA 107 (152)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 34445566789999999999999999999988644
No 228
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=94.72 E-value=0.17 Score=50.96 Aligned_cols=211 Identities=9% Similarity=0.073 Sum_probs=110.8
Q ss_pred CchhHHHHHHHHHHHcCCHHHHHHHHhhCCC----C-------CcchHHHHHHHHHhCCChhHHHHHH------------
Q 045672 205 SDVFVRSALIDIYAKLGELRNAECVFNEMPT----R-------DLVVWNSIIGGFAQNSDVDEALNLY------------ 261 (643)
Q Consensus 205 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~----~-------~~~~~~~li~~~~~~g~~~~A~~~~------------ 261 (643)
....+++-|.-.|+|- +.++-.+.++..-. | ....|.-++-.|.+..+++.|....
T Consensus 261 AHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~ 339 (624)
T 3lvg_A 261 AHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQ 339 (624)
T ss_dssp CCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGG
T ss_pred hhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHH
Confidence 3456677777777664 23333333322211 1 3456777777777777777664321
Q ss_pred -HHHHHcCCCCCHHH---------------HHHHHHHHhcCChhHhHHHHHHHHhh------------cCCchhHHhHHH
Q 045672 262 -KRMKRAGFAADQST---------------LTSVLRACTGLALLELGTQVHVHVLK------------YDHDLILNNALL 313 (643)
Q Consensus 262 -~~m~~~g~~p~~~t---------------~~~ll~a~~~~~~~~~a~~i~~~~~~------------~~~~~~~~~~Li 313 (643)
.+.... ..|... .+-++.++...=+...+.+++...-. ...+..+-.++-
T Consensus 340 Fkdii~K--VaN~EiyYKAi~FYL~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln 417 (624)
T 3lvg_A 340 FKDIITK--VANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLN 417 (624)
T ss_dssp GTTTGGG--CSCSHHHHHHHHHHTTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHH
T ss_pred HHHHHHH--cchHHHHHHHHHHHHHhChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHH
Confidence 000000 111112 23344444444444444455444322 122334556777
Q ss_pred HHHHhcCCHHHHHHHHhhcCCC------------ChhhHHHH-HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 045672 314 DMYCKCGSLEDAMSVFSRMIQK------------DVISWSTM-ISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLF 380 (643)
Q Consensus 314 ~~y~~~g~~~~A~~~~~~m~~~------------~~~~~~~l-i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 380 (643)
+.|....+++.-+.-.+.-..- +..-+..+ ...|.+++++++++++.++ .++ |.-.+.
T Consensus 418 ~L~IEEEDy~~LR~SId~ydNFD~i~LA~rLEkHeL~eFRrIAA~LYkkn~rw~qsi~l~Kk---Dkl------ykDAie 488 (624)
T 3lvg_A 418 NLFITEEDYQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKK---DSL------YKDAMQ 488 (624)
T ss_dssp HHHHHTTCCHHHHHTTSSCCCSCTTHHHHHHHTCSSHHHHHHHHHHHHTTCHHHHHSSCSST---TCC------TTGGGT
T ss_pred HHHhhhhhHHHHHHHHHHhccccHHHHHHHHhhCchHHHHHHHHHHHHhcccHHHHHHHHHh---ccc------HHHHHH
Confidence 8888888877665544433222 22223222 3346677778777765432 112 223345
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 045672 381 ACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLI 431 (643)
Q Consensus 381 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 431 (643)
....+|+.+-+.++++-..+. -+.+.|.+.+-.+...=++|-++++-
T Consensus 489 tAa~S~~~elaeeLL~yFv~~----g~~EcF~a~LytCYdLlrpDvVlEla 535 (624)
T 3lvg_A 489 YASESKDTELAEELLQWFLQE----EKRECFGACLFTCYDLLRPDVVLETA 535 (624)
T ss_dssp TTTTCCCTTHHHHHHHHHHHH----CSTHHHHHHHHHTSSSSSCHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHc----CchHHHHHHHHHHhhccChHHHHHHH
Confidence 566788888888888887763 34456666655555666677777763
No 229
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=94.36 E-value=0.0036 Score=62.58 Aligned_cols=236 Identities=11% Similarity=0.078 Sum_probs=147.2
Q ss_pred chhHHHHHHHHHHcCCChhHHHHHHccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhc
Q 045672 108 ETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDS 187 (643)
Q Consensus 108 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 187 (643)
.+.+|+.|..++.+.|.+.+|.+-| ++..|+..|..+|.+..+.|.+++-+..+...++.. -++..=+.++-++++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHHHh
Confidence 3456777777777777777776655 333566667777777777777777777666555442 233334456666666
Q ss_pred hhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC------------------------CCcchHHH
Q 045672 188 LIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPT------------------------RDLVVWNS 243 (643)
Q Consensus 188 ~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~------------------------~~~~~~~~ 243 (643)
.+++..+-+ .=-.|+..-...+.+-+...|.++.|.-+|..+.. .++.+|-.
T Consensus 129 ~~rL~elEe----fl~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKe 204 (624)
T 3lvg_A 129 TNRLAELEE----FINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKE 204 (624)
T ss_dssp SCSSSTTTS----TTSCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHH
T ss_pred hCcHHHHHH----HHcCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHH
Confidence 555432111 11134444455566777778888888877776642 36778999
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCCH
Q 045672 244 IIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK-YDHDLILNNALLDMYCKCGSL 322 (643)
Q Consensus 244 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~~ 322 (643)
+-.+|...+++.-|.-.--.+.- .|| -...++.-|...|.+++-..+++.... -.....+++-|.-.|+|- ++
T Consensus 205 V~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY-~P 278 (624)
T 3lvg_A 205 VCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-KP 278 (624)
T ss_dssp HTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS-CT
T ss_pred HHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc-CH
Confidence 99999988888777554433332 222 122344556777777777777777776 455667778888888775 33
Q ss_pred HHHHHHHh----hcCCC-------ChhhHHHHHHHHHhcCCHHHHH
Q 045672 323 EDAMSVFS----RMIQK-------DVISWSTMISGLAQNGYSQEAL 357 (643)
Q Consensus 323 ~~A~~~~~----~m~~~-------~~~~~~~li~~~~~~g~~~~A~ 357 (643)
++-.+-++ ++.-| ....|.-++-.|.+..+++.|.
T Consensus 279 eKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 279 QKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp THHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 33333332 22212 3456888888888888888665
No 230
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.22 E-value=0.24 Score=39.96 Aligned_cols=44 Identities=7% Similarity=0.080 Sum_probs=19.9
Q ss_pred HHHHHHHHHhcC-C-CCcchHHHHHHHHHccCChhHHHHHHHHHHh
Q 045672 459 AICAAKKILNLD-P-QDPGTYILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 459 a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
++.+++.++..+ | ..-.....|+-+|.+.|++++|++.++.+.+
T Consensus 57 GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 57 GIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 444444444433 2 1223444444455555555555555554443
No 231
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.37 E-value=0.27 Score=53.21 Aligned_cols=54 Identities=9% Similarity=0.086 Sum_probs=50.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHH
Q 045672 448 GACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMR 501 (643)
Q Consensus 448 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 501 (643)
.-|...|+++.|+.+.+++...-|.+..+|..|+.+|...|+|+.|+-.++.+.
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 347788999999999999999999999999999999999999999999998873
No 232
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=93.30 E-value=2.8 Score=34.07 Aligned_cols=139 Identities=12% Similarity=0.024 Sum_probs=86.3
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCCHHHHHH
Q 045672 249 AQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK-YDHDLILNNALLDMYCKCGSLEDAMS 327 (643)
Q Consensus 249 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~~~~A~~ 327 (643)
.-.|..++..++..+..... +..-++-++.-....-+-+-..+.++.+-+ ++. ..||++.....
T Consensus 18 ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi------------s~C~NlKrVi~ 82 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL------------DKCQNLKSVVE 82 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG------------GGCSCTHHHHH
T ss_pred HHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCc------------HhhhcHHHHHH
Confidence 34566677777776665532 233333333333333333333333333333 221 25666666666
Q ss_pred HHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCC
Q 045672 328 VFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGID 405 (643)
Q Consensus 328 ~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 405 (643)
.+-.+.. +....+..++.+...|+-++-.+++..+.. +.+|++.....+..||.+.|+..++.+++.++.++ |++
T Consensus 83 C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k-G~k 157 (172)
T 1wy6_A 83 CGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKK-GEK 157 (172)
T ss_dssp HHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCH
T ss_pred HHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh-hhH
Confidence 6655433 334456667788889999988888888654 34788888889999999999999999999888874 653
No 233
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=93.17 E-value=3 Score=34.31 Aligned_cols=65 Identities=6% Similarity=-0.079 Sum_probs=42.8
Q ss_pred CCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCC-CcchHHHHHHHHHccCChhHHHHHHHHHHh
Q 045672 438 PDAVTWRALLGACKVHR---NTDLAICAAKKILNLDPQ-DPGTYILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 438 p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
|+..+--.+..++.+.. +..+++.+++.+....|. .-.....|+-+|.+.|++++|+++.+.+.+
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 45555444555555544 345677777777776664 334666777778888888888888877776
No 234
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=92.82 E-value=0.39 Score=37.49 Aligned_cols=65 Identities=11% Similarity=-0.096 Sum_probs=54.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------CCCcchHHHHHHHHHccCChhHHHHHHHHHHhC
Q 045672 439 DAVTWRALLGACKVHRNTDLAICAAKKILNLD-------PQDPGTYILLSNIYANSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 439 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 503 (643)
+..-+-.+...+...|+++.|..-++++++.. +..+.++..|+.+|.+.|++++|...+++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 34455677788999999999999999998742 334568999999999999999999999998763
No 235
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=91.84 E-value=1.4 Score=35.56 Aligned_cols=72 Identities=14% Similarity=0.063 Sum_probs=42.1
Q ss_pred CChHHHHHHHHHHHhcCCHHH---HHHHHHhC-CCC-C-CH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchH
Q 045672 406 PGREHYSCMIDLLGRAGKLQE---AVKLIHEM-PYE-P-DA-VTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTY 477 (643)
Q Consensus 406 p~~~~~~~li~~~~~~g~~~~---A~~~~~~m-~~~-p-~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 477 (643)
|+..+--.+.-++.+.....+ ++.++++. ... | +. ...-.|.-++.+.|+++.|.+.++.+++.+|+|..+.
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~ 111 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAK 111 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHH
Confidence 444444444444555444433 44444443 111 2 11 1233345568899999999999999999999886443
No 236
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=91.34 E-value=1 Score=42.22 Aligned_cols=80 Identities=13% Similarity=0.055 Sum_probs=46.1
Q ss_pred HhHHHHHHHHhhcCCc---hhHHhHHHHHHHh-----cCCHHHHHHHHhhcC--CC--ChhhHHHHHHHHHhc-CCHHHH
Q 045672 290 ELGTQVHVHVLKYDHD---LILNNALLDMYCK-----CGSLEDAMSVFSRMI--QK--DVISWSTMISGLAQN-GYSQEA 356 (643)
Q Consensus 290 ~~a~~i~~~~~~~~~~---~~~~~~Li~~y~~-----~g~~~~A~~~~~~m~--~~--~~~~~~~li~~~~~~-g~~~~A 356 (643)
..++...++++++.|+ ...+..|...|.+ -|+.++|++.|++.. .| +..++......++.. |+.++|
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence 3344444444443443 3456666666666 367777777776652 23 355555666666663 667777
Q ss_pred HHHHHHHHHCCCC
Q 045672 357 LKLFESMKVSRIK 369 (643)
Q Consensus 357 ~~l~~~m~~~g~~ 369 (643)
.+.+++.+.....
T Consensus 260 ~~~L~kAL~a~p~ 272 (301)
T 3u64_A 260 DEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHCCGG
T ss_pred HHHHHHHHcCCCC
Confidence 7777777665444
No 237
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=90.67 E-value=0.52 Score=39.10 Aligned_cols=52 Identities=10% Similarity=-0.086 Sum_probs=34.4
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCC
Q 045672 453 HRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARG 504 (643)
Q Consensus 453 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 504 (643)
.+|.++|..+|+.++.....-+..+...+..-.++|+...|++++.+....+
T Consensus 73 i~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred hcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 3677777777777766533334455556666677777777777777777654
No 238
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=90.48 E-value=2 Score=35.63 Aligned_cols=54 Identities=7% Similarity=-0.085 Sum_probs=36.3
Q ss_pred CCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcc
Q 045672 422 GKLQEAVKLIHEM-P-YEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPG 475 (643)
Q Consensus 422 g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 475 (643)
++.++|.++|+.+ . .+.=...|-....--.++|+.+.|.+++.+++.+.|....
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 5555555555554 0 0111556766666677899999999999999998886543
No 239
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=89.71 E-value=9.1 Score=32.89 Aligned_cols=109 Identities=10% Similarity=0.011 Sum_probs=60.3
Q ss_pred hhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 045672 306 LILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHA 385 (643)
Q Consensus 306 ~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 385 (643)
...|..|.+...+.|+++-|++.|....+ +..+.-.|.-.|+.++-..+-+.....|- ++.....+...
T Consensus 34 ~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----~~~L~~Ly~~tg~~e~L~kla~iA~~~g~------~n~af~~~l~l 102 (177)
T 3mkq_B 34 SITWERLIQEALAQGNASLAEMIYQTQHS-----FDKLSFLYLVTGDVNKLSKMQNIAQTRED------FGSMLLNTFYN 102 (177)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHHHHHHHHTTC------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHhCC-----HHHHHHHHHHhCCHHHHHHHHHHHHHCcc------HHHHHHHHHHc
Confidence 44566677777777777777777776654 33334445556666665555544444431 33333445566
Q ss_pred CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 045672 386 GFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMP 435 (643)
Q Consensus 386 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 435 (643)
|+++++.++|.+..+ -|... -.....|..+.|.++.++++
T Consensus 103 Gdv~~~i~lL~~~~r----~~eA~------~~A~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 103 NSTKERSSIFAEGGS----LPLAY------AVAKANGDEAAASAFLEQAE 142 (177)
T ss_dssp TCHHHHHHHHHHTTC----HHHHH------HHHHHTTCHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHCCC----hHHHH------HHHHHcCcHHHHHHHHHHhC
Confidence 888888777755432 12111 11112455666777776664
No 240
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.26 E-value=20 Score=36.25 Aligned_cols=254 Identities=7% Similarity=0.052 Sum_probs=145.0
Q ss_pred CCcchHHHHHHHHHh-----CCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHH----HHHcCC
Q 045672 53 RDLPRAMKAMHAMQC-----HGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN----MHVKFS 123 (643)
Q Consensus 53 g~~~~A~~~~~~m~~-----~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~----~~~~~g 123 (643)
|++.+|++.+..+.+ .+..........++..|...++++...+.+..+.+..-.. ......+++ ......
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcCC
Confidence 678888887766543 2234456678889999999999998877776665532222 122233333 222222
Q ss_pred --ChhHHHHHHccCCC---C-------CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhH
Q 045672 124 --LLEEAQVLFDQMPE---R-------NVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL 191 (643)
Q Consensus 124 --~~~~A~~~f~~m~~---~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 191 (643)
+.+.-..+.+.... . .......|...|-..|++.+|.+++.++...-...+....
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~------------- 175 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSE------------- 175 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHH-------------
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHH-------------
Confidence 22233344443332 1 1123456788889999999999999998743211111111
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC------CC----cchHHHHHHHHHhCCChhHHHHHH
Q 045672 192 RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPT------RD----LVVWNSIIGGFAQNSDVDEALNLY 261 (643)
Q Consensus 192 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~------~~----~~~~~~li~~~~~~g~~~~A~~~~ 261 (643)
-+..+...+..|...+++..|..++.++.. ++ ...+..++..+...+++.+|...|
T Consensus 176 --------------kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y 241 (445)
T 4b4t_P 176 --------------KIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYL 241 (445)
T ss_dssp --------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred --------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 022334467788888999888887776531 11 134566777788889999998888
Q ss_pred HHHHHc-CCCCCHHHHHHH-----HHHHhcCChhHhHHHHHHHHhh--cCCchhHHhHHHHHHHhc--CCHHHHHHHHhh
Q 045672 262 KRMKRA-GFAADQSTLTSV-----LRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKC--GSLEDAMSVFSR 331 (643)
Q Consensus 262 ~~m~~~-g~~p~~~t~~~l-----l~a~~~~~~~~~a~~i~~~~~~--~~~~~~~~~~Li~~y~~~--g~~~~A~~~~~~ 331 (643)
.+.... ...-|...+..+ +.........+... +.....+ ..++...+..|+.+|... .+++.+.+.|..
T Consensus 242 ~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~-ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~ 320 (445)
T 4b4t_P 242 QEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQND-LIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEP 320 (445)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHH-HHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCS
T ss_pred HHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHH-HHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHH
Confidence 777542 112233222221 11111111222222 2222222 335667788888888764 467778788876
Q ss_pred cCCC
Q 045672 332 MIQK 335 (643)
Q Consensus 332 m~~~ 335 (643)
...+
T Consensus 321 ~L~~ 324 (445)
T 4b4t_P 321 VLNE 324 (445)
T ss_dssp STTT
T ss_pred Hhcc
Confidence 6444
No 241
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=88.57 E-value=1 Score=45.06 Aligned_cols=66 Identities=15% Similarity=0.138 Sum_probs=53.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHh-----CCCCcCC
Q 045672 444 RALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRA-----RGITKEP 509 (643)
Q Consensus 444 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~ 509 (643)
..++.++...|+++++...++.++..+|-+...|..++.+|.+.|+..+|.+.|+...+ -|+.|.|
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~ 245 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 245 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 34556677888888888888888888888888889999999999999999888877653 3777655
No 242
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=88.03 E-value=2.4 Score=34.39 Aligned_cols=46 Identities=9% Similarity=-0.013 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhcCCC-CcchHHHHHHHHHccCChhHHHHHHHHHHh
Q 045672 457 DLAICAAKKILNLDPQ-DPGTYILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 457 ~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
.+|+.+++.+...+|. .-..+..|+-++.+.|++++|+++.+.+.+
T Consensus 60 ~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 60 RLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 4566666666655553 234555666666666666666666666654
No 243
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=87.75 E-value=19 Score=34.20 Aligned_cols=168 Identities=10% Similarity=0.014 Sum_probs=104.8
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhCCChhHHHHH----HHHHHHcCCCCCHHHHHHHHHHH
Q 045672 208 FVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNL----YKRMKRAGFAADQSTLTSVLRAC 283 (643)
Q Consensus 208 ~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~a~ 283 (643)
..+.++..=|.+.+++++|.+++.. -...+.+.|+...|-++ .+-..+.+++++..+...++..+
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3455677888889999999887533 33445667777666654 44455568888888888888777
Q ss_pred hcCChhH-hHHHHHHHHhh----c----CCchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhc---C
Q 045672 284 TGLALLE-LGTQVHVHVLK----Y----DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQN---G 351 (643)
Q Consensus 284 ~~~~~~~-~a~~i~~~~~~----~----~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~---g 351 (643)
.....-+ .-..+...+++ . ..+......+...|.+.|++.+|+..|-.-...|...+..|+--+... |
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~ 182 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDI 182 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCC
Confidence 6543222 22344444544 2 236678889999999999999999987633323455555554444433 4
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 045672 352 YSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKF 401 (643)
Q Consensus 352 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 401 (643)
...++-- ..-..++ -|.-.|++..|..+|+...+.
T Consensus 183 ~~~e~dl--------------f~~RaVL-~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 183 EDSTVAE--------------FFSRLVF-NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp CHHHHHH--------------HHHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred CcchHHH--------------HHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 4433221 1112233 234568888888888877653
No 244
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=87.30 E-value=40 Score=37.40 Aligned_cols=246 Identities=11% Similarity=-0.042 Sum_probs=125.5
Q ss_pred HHHcCCHHHHHHHHhhCCCC----Cc--chHHHHHHHHHhCCChhHHHHHHHHHHHcCC--CC---CHHH----HHHHHH
Q 045672 217 YAKLGELRNAECVFNEMPTR----DL--VVWNSIIGGFAQNSDVDEALNLYKRMKRAGF--AA---DQST----LTSVLR 281 (643)
Q Consensus 217 y~~~g~~~~A~~~f~~~~~~----~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p---~~~t----~~~ll~ 281 (643)
....|+.+++..+++..... +. ..-..+.-+.+..|..+++++++.......- .- +... ...+.-
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 44567777888888776541 21 2223344556667776778887777655321 00 0111 111222
Q ss_pred HHhcCChhHhHHHHHHHHhh-cCCch--hHHhHHHHHHHhcCCHHHHHHHHhhcCC--CC-hhhHHHHHHHHHhcCCHHH
Q 045672 282 ACTGLALLELGTQVHVHVLK-YDHDL--ILNNALLDMYCKCGSLEDAMSVFSRMIQ--KD-VISWSTMISGLAQNGYSQE 355 (643)
Q Consensus 282 a~~~~~~~~~a~~i~~~~~~-~~~~~--~~~~~Li~~y~~~g~~~~A~~~~~~m~~--~~-~~~~~~li~~~~~~g~~~~ 355 (643)
++...++-+ +...+..+.. -.... ...-+|...|.-.|+-+....++..+.+ .+ +.-.-++.-|+...|+.+.
T Consensus 464 a~~GS~~ee-v~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~ 542 (963)
T 4ady_A 464 AAMGSANIE-VYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQEL 542 (963)
T ss_dssp HSTTCCCHH-HHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGG
T ss_pred HhcCCCCHH-HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHH
Confidence 223333332 2233333322 11111 2223445556677888777777766532 22 2223333445557888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHH---HHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHH
Q 045672 356 ALKLFESMKVSRIKPNYITIV---GVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIH 432 (643)
Q Consensus 356 A~~l~~~m~~~g~~p~~~t~~---~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 432 (643)
+..+.+.+.... .|. .-|. .+..+|+..|+.....+++..+..+ ...++.-...+.-++.-.|..+.+.++++
T Consensus 543 ~~~li~~L~~~~-dp~-vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rlv~ 618 (963)
T 4ady_A 543 ADDLITKMLASD-ESL-LRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRIVQ 618 (963)
T ss_dssp GHHHHHHHHHCS-CHH-HHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHHTT
T ss_pred HHHHHHHHHhCC-CHH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 888888887631 222 2222 3445778889988888888888763 22233322233333334566555666665
Q ss_pred hCCCCCCHHHHH--HHHHHHHHcCCH-HHHHHHHHHHH
Q 045672 433 EMPYEPDAVTWR--ALLGACKVHRNT-DLAICAAKKIL 467 (643)
Q Consensus 433 ~m~~~p~~~~~~--~ll~~~~~~g~~-~~a~~~~~~~~ 467 (643)
.+....|..+-. ++.-+....|+. ..+...+..+.
T Consensus 619 ~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 619 LLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp TGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 542222333322 222333333332 55666666664
No 245
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=87.27 E-value=21 Score=34.19 Aligned_cols=166 Identities=13% Similarity=0.086 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhCCChhHHHHHH----HHHHHcCCCCCHHHHHHHHHHHh
Q 045672 209 VRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLY----KRMKRAGFAADQSTLTSVLRACT 284 (643)
Q Consensus 209 ~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~a~~ 284 (643)
++.++..=|.+.+++++|.+++.. -...+.+.|+...|-++- +-..+.++++|..+...++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 455677788999999999987532 334456677776665554 44556788899888888888776
Q ss_pred cCChhH-hHHHHHHHHhh--------cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHH
Q 045672 285 GLALLE-LGTQVHVHVLK--------YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQE 355 (643)
Q Consensus 285 ~~~~~~-~a~~i~~~~~~--------~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~ 355 (643)
....-+ .-..+...+++ ...+..+...+...|.+.+++.+|+..|-.-.++.+..+..|+--+...+...
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~- 184 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESH- 184 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGG-
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCc-
Confidence 655321 12334444444 22456777888999999999999999885322223355544444333333211
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 045672 356 ALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKK 400 (643)
Q Consensus 356 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 400 (643)
.++...-..++. |...+++..|..+++...+
T Consensus 185 -------------e~dlfiaRaVL~-yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 185 -------------TAPLYCARAVLP-YLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp -------------GHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHH
T ss_pred -------------cHHHHHHHHHHH-HHHhCCHHHHHHHHHHHHH
Confidence 122222233333 4456788888887766654
No 246
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=86.64 E-value=23 Score=33.95 Aligned_cols=131 Identities=12% Similarity=0.014 Sum_probs=80.4
Q ss_pred HHHHHHHHHHcCCChhHHHHHHccCCCCCcchHHHHHHHHHhCCChhHHHHHH----HHHHHCCCCCChhhHHHHHHHHh
Q 045672 111 LVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELL----IFMLREGVRPNMFTYSAVLRACD 186 (643)
Q Consensus 111 ~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~a~~ 186 (643)
.|.++..-|.+.+++++|.+++-. -...+.+.|+...|-++- +-+.+.++++|..+...++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 445566778889999999987632 234556677776665554 44556788888887777777665
Q ss_pred chhhH---H-----HHHHHHHHhC--CCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhCC
Q 045672 187 SLIIL---R-----QLHCGIIKVG--FESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNS 252 (643)
Q Consensus 187 ~~~~~---~-----~~~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g 252 (643)
....- . +...+-.+.| -.-|+.....+...|.+.+++.+|+..|-.-.++.+..+..|+.-+...+
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~ 181 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQD 181 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTS
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhc
Confidence 44321 1 3333334444 34466777778888888888888888774222222245544444444433
No 247
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=86.32 E-value=4.8 Score=30.70 Aligned_cols=63 Identities=11% Similarity=0.129 Sum_probs=50.1
Q ss_pred CcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 045672 54 DLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117 (643)
Q Consensus 54 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 117 (643)
+..+..+-++.+...++-|++....+.|++|.+.+++..|.++++.+...- .+...+|..++.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 555777888888888899999999999999999999999999999887643 233456666654
No 248
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=85.79 E-value=4.4 Score=30.91 Aligned_cols=63 Identities=21% Similarity=0.209 Sum_probs=51.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 045672 352 YSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMID 416 (643)
Q Consensus 352 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 416 (643)
+.-+..+-++.+....+.|++....+.|.||.+.+++..|.++|+.++.+.+ +....|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CchhhHHHHHH
Confidence 4556777778888888999999999999999999999999999999987533 33456777664
No 249
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=85.27 E-value=16 Score=38.94 Aligned_cols=78 Identities=12% Similarity=0.023 Sum_probs=40.7
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhhcCCc--hhHHhHHHHHHHh---
Q 045672 244 IIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHD--LILNNALLDMYCK--- 318 (643)
Q Consensus 244 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~--~~~~~~Li~~y~~--- 318 (643)
....+.-.|+++.|++++.+. ...|.+.+...+.-+.-++- ... +....++ ..-+..||..|.+
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~---~~~----lls~~~~~~~lN~arLI~~Yt~~F~ 368 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI---DSS----TRLTKKPKRDIRFANILANYTKSFR 368 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC---CCc----ccccCCCcccccHHHHHHHHHHHhh
Confidence 455566789999999987644 24455666555554433332 111 1111111 2224567777765
Q ss_pred cCCHHHHHHHHhhc
Q 045672 319 CGSLEDAMSVFSRM 332 (643)
Q Consensus 319 ~g~~~~A~~~~~~m 332 (643)
..+..+|...|--+
T Consensus 369 ~td~~~Al~Y~~li 382 (661)
T 2qx5_A 369 YSDPRVAVEYLVLI 382 (661)
T ss_dssp TTCHHHHHHHHHGG
T ss_pred cCCHHHHHHHHHHH
Confidence 56777777776655
No 250
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=84.48 E-value=11 Score=28.48 Aligned_cols=90 Identities=14% Similarity=0.116 Sum_probs=66.9
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCChhHHHHHHccCCCCCcchHHHHHHHHHhCCChhHHHHHHHH
Q 045672 86 ARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIF 165 (643)
Q Consensus 86 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 165 (643)
.....++|.-|-+.+...+. ...+--.-+..+...|++++|..+.+.+.-||..+|-+|-. .+.|..+++..-+.+
T Consensus 18 G~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~ 93 (115)
T 2uwj_G 18 GQHCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAG 93 (115)
T ss_dssp TTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHH
Confidence 44568889888888877654 33333334455678999999999999999999999988765 567888888888878
Q ss_pred HHHCCCCCChhhHHH
Q 045672 166 MLREGVRPNMFTYSA 180 (643)
Q Consensus 166 m~~~g~~p~~~t~~~ 180 (643)
+..+| .|....|..
T Consensus 94 la~sg-~p~~q~Fa~ 107 (115)
T 2uwj_G 94 LGGSS-DPALADFAA 107 (115)
T ss_dssp HHTCS-SHHHHHHHH
T ss_pred HHhCC-CHHHHHHHH
Confidence 87666 455444543
No 251
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=84.10 E-value=12 Score=28.41 Aligned_cols=90 Identities=16% Similarity=0.136 Sum_probs=65.5
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCChhHHHHHHccCCCCCcchHHHHHHHHHhCCChhHHHHHHHH
Q 045672 86 ARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIF 165 (643)
Q Consensus 86 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 165 (643)
.....++|.-|-+.+...+. ...+--.-+..+...|++++|..+.+.+.-||..+|-+|-. .+.|..+++..-+.+
T Consensus 19 G~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~ 94 (116)
T 2p58_C 19 GNHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNR 94 (116)
T ss_dssp TTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHH
Confidence 44568889888888877654 33333334455678999999999999999999999998865 456777777777777
Q ss_pred HHHCCCCCChhhHHH
Q 045672 166 MLREGVRPNMFTYSA 180 (643)
Q Consensus 166 m~~~g~~p~~~t~~~ 180 (643)
+..+| .|....|..
T Consensus 95 la~sg-~p~~q~Fa~ 108 (116)
T 2p58_C 95 LARSQ-DPRIQTFVN 108 (116)
T ss_dssp HTTCC-CHHHHHHHH
T ss_pred HHhCC-CHHHHHHHH
Confidence 76665 444444443
No 252
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=83.67 E-value=28 Score=34.44 Aligned_cols=22 Identities=23% Similarity=0.161 Sum_probs=10.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 045672 343 MISGLAQNGYSQEALKLFESMK 364 (643)
Q Consensus 343 li~~~~~~g~~~~A~~l~~~m~ 364 (643)
++..|...|++.+|++++.++.
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~ 126 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLL 126 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHH
Confidence 3444444455555444444443
No 253
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=83.66 E-value=7.7 Score=38.56 Aligned_cols=70 Identities=14% Similarity=0.157 Sum_probs=50.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH----hcCCCCChHHH
Q 045672 341 STMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKK----FYGIDPGREHY 411 (643)
Q Consensus 341 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~~ 411 (643)
..++..+...|++++|+..++.+.... +-++..+..++.++...|+..+|.+.|+.+.+ ++|+.|+..+-
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 445667777888888888887776642 44677888888888888888888888877644 35777776543
No 254
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=83.62 E-value=6.2 Score=33.39 Aligned_cols=23 Identities=9% Similarity=0.249 Sum_probs=13.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCC
Q 045672 413 CMIDLLGRAGKLQEAVKLIHEMP 435 (643)
Q Consensus 413 ~li~~~~~~g~~~~A~~~~~~m~ 435 (643)
-+..+|.+.|++++|+.+++.+|
T Consensus 127 kia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 127 KLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHCCHHHHHHHHhcCC
Confidence 34555556666666666666554
No 255
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=81.87 E-value=9.8 Score=32.17 Aligned_cols=69 Identities=4% Similarity=-0.091 Sum_probs=47.5
Q ss_pred CCCCCcchHHHHHHHHHhCCCcchHHHHHHHHHhCC-CCCCH-------hhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 045672 34 TITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHG-VRADS-------VTYAELIKCCLARHAVEEAKLVHNHVLS 102 (643)
Q Consensus 34 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 102 (643)
.|....-.+-.-+..+...|.++.|+-+...+.... ..|+. .++..+.+++...+++..|...|++.++
T Consensus 15 ~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 15 VPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 344444556666888899999999998888765421 23332 2567778888899999999999998754
No 256
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=81.59 E-value=17 Score=39.38 Aligned_cols=52 Identities=13% Similarity=0.020 Sum_probs=38.0
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 045672 382 CSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMP 435 (643)
Q Consensus 382 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 435 (643)
|...|+++.|+.+-++... -.+.+..+|..|+..|...|+++.|+-.++.+|
T Consensus 347 Ll~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 4556788888877777765 233356778888888888888888888877775
No 257
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=80.47 E-value=40 Score=31.99 Aligned_cols=168 Identities=11% Similarity=0.029 Sum_probs=102.9
Q ss_pred HhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHH----HHHHHHCCCCCCHHHHHHHHHHHhc
Q 045672 309 NNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKL----FESMKVSRIKPNYITIVGVLFACSH 384 (643)
Q Consensus 309 ~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l----~~~m~~~g~~p~~~t~~~ll~a~~~ 384 (643)
+.++..=|.+.+++++|.+++.. -...+.++|+...|-++ .+-..+.+++++......++..+..
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 45677788889999999887543 23456677887766665 4455667888998888777776654
Q ss_pred cCCHH-HHHHHHHHhHH---hcCC--CCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc---CC
Q 045672 385 AGFVE-DGWNHFKSMKK---FYGI--DPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH---RN 455 (643)
Q Consensus 385 ~g~~~-~a~~~~~~~~~---~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~---g~ 455 (643)
-..-+ .=.++.+.+.+ +.|- .-++.....+...|.+.|++.+|..-|-.- ..-|...+..++.-+... |.
T Consensus 105 ~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~-~~~s~~~~a~~l~~w~~~~~~~~ 183 (312)
T 2wpv_A 105 LDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLG-THDSMIKYVDLLWDWLCQVDDIE 183 (312)
T ss_dssp CCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTS-CHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCccHHHHHHHHHHHHHhcCCCC
Confidence 32111 11233333332 1122 236778888999999999999999877522 111355566665554444 44
Q ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHh
Q 045672 456 TDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 456 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
..++-...- ..+--|.-.|+...|..+++...+
T Consensus 184 ~~e~dlf~~--------------RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 184 DSTVAEFFS--------------RLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHHHHHHH--------------HHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred cchHHHHHH--------------HHHHHHHHhcCHHHHHHHHHHHHH
Confidence 333222111 122235567888899888887653
No 258
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=79.63 E-value=11 Score=30.54 Aligned_cols=63 Identities=11% Similarity=0.129 Sum_probs=48.1
Q ss_pred CcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 045672 54 DLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117 (643)
Q Consensus 54 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 117 (643)
|..+..+-++.+...++-|++......|++|.+.+|+..|.++++-+...- .+...+|..++.
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 455677777777778888999999999999999999999999998877642 334555666554
No 259
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=79.36 E-value=9.2 Score=30.91 Aligned_cols=63 Identities=19% Similarity=0.182 Sum_probs=50.8
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 045672 352 YSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMID 416 (643)
Q Consensus 352 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 416 (643)
+.-+..+-++.+....+.|++......|.+|-+.+++..|.++|+.++.+ ..+....|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHH
Confidence 34466667777777889999999999999999999999999999999875 3444556777664
No 260
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=73.34 E-value=28 Score=26.43 Aligned_cols=61 Identities=10% Similarity=0.117 Sum_probs=46.7
Q ss_pred HHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 045672 315 MYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGV 378 (643)
Q Consensus 315 ~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 378 (643)
.+...|++++|..+.+.+.-||...|-++-. .+.|..+++..-+.++..+| .|....|..-
T Consensus 48 SLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~Fa~g 108 (115)
T 2uwj_G 48 SLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS-DPALADFAAG 108 (115)
T ss_dssp HHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS-SHHHHHHHHH
T ss_pred HHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHHHHH
Confidence 3557899999999999999999999977654 46788888888777887776 5666666543
No 261
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=73.31 E-value=24 Score=28.52 Aligned_cols=30 Identities=10% Similarity=0.092 Sum_probs=21.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Q 045672 445 ALLGACKVHRNTDLAICAAKKILNLDPQDP 474 (643)
Q Consensus 445 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 474 (643)
-|.-|+.+.|+++.|.+..+.+++.+|+|.
T Consensus 83 yLAvg~yklgdY~~Ar~y~d~lL~~eP~N~ 112 (134)
T 3o48_A 83 YLTIGCYKLGEYSMAKRYVDTLFEHERNNK 112 (134)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence 344556677777777777777777777775
No 262
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=73.07 E-value=1.2e+02 Score=33.69 Aligned_cols=232 Identities=13% Similarity=0.027 Sum_probs=121.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhCCC-CC----------cchHHHHHHHHHhCCC-hhHHHHHHHHHHHcCCCCCH--HH
Q 045672 210 RSALIDIYAKLGELRNAECVFNEMPT-RD----------LVVWNSIIGGFAQNSD-VDEALNLYKRMKRAGFAADQ--ST 275 (643)
Q Consensus 210 ~~~li~~y~~~g~~~~A~~~f~~~~~-~~----------~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~--~t 275 (643)
...+.-+...+|.-+++..++..... .+ +..-.++.-|++-.|. -+++.+.+..+....- +.. ..
T Consensus 414 GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd~-~~~~~~A 492 (963)
T 4ady_A 414 GSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDS-ATSGEAA 492 (963)
T ss_dssp HHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTCC-HHHHHHH
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCC-HHHHHHH
Confidence 33444455566666667766654332 22 1112334344444443 3466777776665321 111 11
Q ss_pred HHHHHHHHhcCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCC-CCh-hhHH---HHHHHHHh
Q 045672 276 LTSVLRACTGLALLELGTQVHVHVLK-YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ-KDV-ISWS---TMISGLAQ 349 (643)
Q Consensus 276 ~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~-~~~-~~~~---~li~~~~~ 349 (643)
-.++...+...|+-+....++..+.. ...++.-.-++.-++.-.|+.+.+..+.+.+.. .|. +-|. ++.-+|+.
T Consensus 493 alALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaG 572 (963)
T 4ady_A 493 ALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAG 572 (963)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTT
T ss_pred HHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcC
Confidence 11223334567777777777777766 333333333344444466777777777766632 333 3343 23456778
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCH-HHHH
Q 045672 350 NGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKL-QEAV 428 (643)
Q Consensus 350 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~ 428 (643)
.|+.....+++..+.... ..+......+.-+....|+.+.+.+++..+.+ ...|.+..-.++.-+....|.. .+|.
T Consensus 573 TGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~--~~d~~VR~gAalALGli~aGn~~~~ai 649 (963)
T 4ady_A 573 TGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSK--SHNAHVRCGTAFALGIACAGKGLQSAI 649 (963)
T ss_dssp SCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGG--CSCHHHHHHHHHHHHHHTSSSCCHHHH
T ss_pred CCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHhccCCCcHHHH
Confidence 888866666888887632 22222222222344445666666677765655 2345555444555555545543 5677
Q ss_pred HHHHhCCCCCCHHHHHH
Q 045672 429 KLIHEMPYEPDAVTWRA 445 (643)
Q Consensus 429 ~~~~~m~~~p~~~~~~~ 445 (643)
+.+..+...+|..+-..
T Consensus 650 d~L~~L~~D~d~~Vrq~ 666 (963)
T 4ady_A 650 DVLDPLTKDPVDFVRQA 666 (963)
T ss_dssp HHHHHHHTCSSHHHHHH
T ss_pred HHHHHHccCCCHHHHHH
Confidence 77777754556554433
No 263
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=73.02 E-value=99 Score=32.65 Aligned_cols=437 Identities=11% Similarity=0.014 Sum_probs=215.9
Q ss_pred HHHHHHHHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC-chhHHHHHHHHHH
Q 045672 42 LLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEP-ETFLVNILLNMHV 120 (643)
Q Consensus 42 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~~~ 120 (643)
|.....+ .+.|++..+..+...+....+.| -..|..+..... ..... ++-..+.+..-.| ....-+.-+..+.
T Consensus 10 ~~~a~~a-~~~~~~~~~~~l~~~l~~~pL~~-yl~y~~l~~~l~-~~~~~---ev~~Fl~~~~~~p~~~~Lr~~~l~~l~ 83 (618)
T 1qsa_A 10 YAQIKQA-WDNRQMDVVEQMMPGLKDYPLYP-YLEYRQITDDLM-NQPAV---TVTNFVRANPTLPPARTLQSRFVNELA 83 (618)
T ss_dssp HHHHHHH-HHTTCHHHHHHHSGGGTTSTTHH-HHHHHHHHHTGG-GCCHH---HHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHCCCHHHHHHHHHhhcCCCcHH-HHHHHHHHhCcc-cCCHH---HHHHHHHHCCCChhHHHHHHHHHHHHH
Confidence 3333443 45688888777766654322211 123444333221 12334 3333333332112 2234455667778
Q ss_pred cCCChhHHHHHHccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHH--HHHHHH
Q 045672 121 KFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR--QLHCGI 198 (643)
Q Consensus 121 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~--~~~~~~ 198 (643)
+.+++......+.. +..+...--....+....|+..+|......+-..| .........++..+.+.|.+. .+...+
T Consensus 84 ~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt~~~~~~R~ 161 (618)
T 1qsa_A 84 RREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQDPLAYLERI 161 (618)
T ss_dssp HTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred hCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 88999999997776 43344444456677788899888888888877665 334455666666665433222 111111
Q ss_pred H---Hh-----------CCCCch-hHHHHHHHHHHHcCCHHHHHHHHhhCCCCCcc---hHHHHHHHHHhCCChhHHHHH
Q 045672 199 I---KV-----------GFESDV-FVRSALIDIYAKLGELRNAECVFNEMPTRDLV---VWNSIIGGFAQNSDVDEALNL 260 (643)
Q Consensus 199 ~---~~-----------g~~~~~-~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~ 260 (643)
. .. .+.++. .....++..+.+- ..+........ ++.. .+..-+.-+.+ .+.+.|..+
T Consensus 162 ~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p---~~~~~~~~~~~-~~~~~~~~~~~~~~rlar-~d~~~A~~~ 236 (618)
T 1qsa_A 162 RLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNP---NTVLTFARTTG-ATDFTRQMAAVAFASVAR-QDAENARLM 236 (618)
T ss_dssp HHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCG---GGHHHHHHHSC-CCHHHHHHHHHHHHHHHH-HCHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhCh---HhHHHHHhccC-CChhhHHHHHHHHHHHHh-cCHHHHHHH
Confidence 1 11 111111 1112222222111 11122221111 1111 11112222333 377888888
Q ss_pred HHHHHHcCCCCCHHHHHHH----HHHHhcCChhHhHHHHHHHHhhcCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCC
Q 045672 261 YKRMKRAGFAADQSTLTSV----LRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKD 336 (643)
Q Consensus 261 ~~~m~~~g~~p~~~t~~~l----l~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~ 336 (643)
|....+.+ ..+......+ .......+....+...+........+.....-.+....+.|+++.|...|+.|....
T Consensus 237 ~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~ 315 (618)
T 1qsa_A 237 IPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMALGTGDRRGLNTWLARLPMEA 315 (618)
T ss_dssp HHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTG
T ss_pred HHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHHHHHHHHHHCCCHHHHHHHHHHccccc
Confidence 88876543 2233322222 222333442334444444444422333233344445557799999999999996532
Q ss_pred --hhhH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-h---H
Q 045672 337 --VISW-STMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPG-R---E 409 (643)
Q Consensus 337 --~~~~-~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~---~ 409 (643)
..-| -=+..++...|+.++|..+|+++... . +|-.++.+ .+.|..-. ... ....+. . .
T Consensus 316 ~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~---~---~fYg~lAa-~~Lg~~~~-------~~~-~~~~~~~~~~~~ 380 (618)
T 1qsa_A 316 KEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---R---GFYPMVAA-QRIGEEYE-------LKI-DKAPQNVDSALT 380 (618)
T ss_dssp GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---C---SHHHHHHH-HHTTCCCC-------CCC-CCCCSCCCCHHH
T ss_pred cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC---C---ChHHHHHH-HHcCCCCC-------CCC-CCCChhHHhhhc
Confidence 1111 12345677889999999999988642 2 34444422 22221100 000 000110 0 0
Q ss_pred --HHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---CCcchHHHHHHHH
Q 045672 410 --HYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDP---QDPGTYILLSNIY 484 (643)
Q Consensus 410 --~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p---~~~~~~~~l~~~~ 484 (643)
.-..-+..+...|...+|...+.......+......+.......|..+.++....+....+. .-|..|..++.-+
T Consensus 381 ~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~~~~v~~~~~~~~~~~~~~~~P~~y~~~i~~~ 460 (618)
T 1qsa_A 381 QGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAGKLWDHLEERFPLAYNDLFKRY 460 (618)
T ss_dssp HSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCTTCHHHHSCCTTHHHHHHH
T ss_pred cChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhcchhhhCCcchHHHHHHH
Confidence 11223456778899999988776652233444444455556678888888776654432220 0133566666667
Q ss_pred HccCChhHHHHHHHHHHhCCCCc
Q 045672 485 ANSQKWDEVAEVRKTMRARGITK 507 (643)
Q Consensus 485 ~~~g~~~~a~~~~~~m~~~g~~~ 507 (643)
++.-.++...-.---..|.+..+
T Consensus 461 a~~~gv~~~ll~Ai~~~ES~f~p 483 (618)
T 1qsa_A 461 TSGKEIPQSYAMAIARQESAWNP 483 (618)
T ss_dssp HTTSSSCHHHHHHHHHHHHTTCT
T ss_pred HHHcCCCHHHHHHHHHHhCCCCC
Confidence 76666665544322334555544
No 264
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=72.95 E-value=45 Score=31.62 Aligned_cols=60 Identities=12% Similarity=0.147 Sum_probs=44.7
Q ss_pred HHHhCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhC
Q 045672 430 LIHEMPYEPDA--VTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 430 ~~~~m~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 503 (643)
+|...+++|.. .++.+-++.+.+++|+..|..+.++++++.|+.. ..++|+++...-...
T Consensus 195 YFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~a~qArkil~~ce~~ 256 (325)
T 3mv2_A 195 YFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP--------------RAEQARKIKNKADSM 256 (325)
T ss_dssp HGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH--------------HHHHHHHHHHHHHTS
T ss_pred HhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcC
Confidence 34555666643 3677788889999999999999999999998532 345677877766544
No 265
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=72.34 E-value=30 Score=26.32 Aligned_cols=61 Identities=15% Similarity=0.213 Sum_probs=45.8
Q ss_pred HHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 045672 315 MYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGV 378 (643)
Q Consensus 315 ~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 378 (643)
.+...|++++|..+.+.+.-||...|-++-. .+.|..+++..-+.++..+| .|....|..-
T Consensus 49 SLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~Fa~g 109 (116)
T 2p58_C 49 SLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ-DPRIQTFVNG 109 (116)
T ss_dssp HHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC-CHHHHHHHHH
T ss_pred HHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHHHHH
Confidence 3457899999999999999999999977654 46677777777777777776 5665555443
No 266
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=71.83 E-value=28 Score=40.23 Aligned_cols=123 Identities=6% Similarity=-0.152 Sum_probs=79.1
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCC--CC-----------------
Q 045672 377 GVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMP--YE----------------- 437 (643)
Q Consensus 377 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~----------------- 437 (643)
.++..+...+..+.+.++..-. +.+....-.+..+|...|++++|.+.|.+.. +.
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~------~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL------NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS------CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhc------cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccc
Confidence 3445555566665555543222 2233333345566777788888888777661 10
Q ss_pred ------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcc-----hHHHHHHHHHccCChhHHHHHHHHHHhCCC
Q 045672 438 ------PDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPG-----TYILLSNIYANSQKWDEVAEVRKTMRARGI 505 (643)
Q Consensus 438 ------p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-----~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 505 (643)
.-..-|.-++..+.+++.++.+.+..+.+++..+.+.. .|..+-+.+...|++++|...+-.+.+...
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~ 969 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL 969 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH
Confidence 01123556677788899999999999988876543222 567778888999999999998887776544
No 267
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=71.47 E-value=89 Score=31.44 Aligned_cols=95 Identities=12% Similarity=0.062 Sum_probs=67.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHHhccCCHHHHHHHHHHhHHh-cCCCCC----hH
Q 045672 340 WSTMISGLAQNGYSQEALKLFESMKVS--RIKPN---YITIVGVLFACSHAGFVEDGWNHFKSMKKF-YGIDPG----RE 409 (643)
Q Consensus 340 ~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~-~~~~p~----~~ 409 (643)
...+...|...|++.+|.+++.++... |..+. ...+...+..|...+++.+|..++.++... +...+. ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 345677888899999999999887542 22222 234556677888999999999998887532 122222 24
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC
Q 045672 410 HYSCMIDLLGRAGKLQEAVKLIHEM 434 (643)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m 434 (643)
.|.+++..+...+++.+|.+.|.+.
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 5778888889999999998877665
No 268
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=71.36 E-value=61 Score=37.37 Aligned_cols=120 Identities=13% Similarity=0.077 Sum_probs=63.8
Q ss_pred CchhHHhHHHHHHHhcCCHHHHHHHHhhcCCC----C----------------------hhhHHHHHHHHHhcCCHHHHH
Q 045672 304 HDLILNNALLDMYCKCGSLEDAMSVFSRMIQK----D----------------------VISWSTMISGLAQNGYSQEAL 357 (643)
Q Consensus 304 ~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~----~----------------------~~~~~~li~~~~~~g~~~~A~ 357 (643)
.+....-.+..+|..+|++++|...|.+.... + ..-|.-++..|-++|.++.++
T Consensus 840 ~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi 919 (1139)
T 4fhn_B 840 SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDAL 919 (1139)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHH
T ss_pred CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHH
Confidence 33333345566677788888888887665110 0 012445566666666666666
Q ss_pred HHHHHHHHCCCCCCH--H--HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHH
Q 045672 358 KLFESMKVSRIKPNY--I--TIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQE 426 (643)
Q Consensus 358 ~l~~~m~~~g~~p~~--~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 426 (643)
++-+..++..-.-+. . .|..+..++...|++++|...+-.+... .--......||..++..|..++
T Consensus 920 ~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~---~~r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 920 EFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT---PLKKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS---SSCHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH---HHHHHHHHHHHHHHHhCCChhh
Confidence 666555443211111 1 3455666666667777666665554331 1223455555655555555443
No 269
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=71.03 E-value=42 Score=27.52 Aligned_cols=70 Identities=9% Similarity=-0.004 Sum_probs=41.5
Q ss_pred CChHHHHHHHHHHHhcCCHH---HHHHHHHhC-CCCC-CHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcc
Q 045672 406 PGREHYSCMIDLLGRAGKLQ---EAVKLIHEM-PYEP-DAV-TWRALLGACKVHRNTDLAICAAKKILNLDPQDPG 475 (643)
Q Consensus 406 p~~~~~~~li~~~~~~g~~~---~A~~~~~~m-~~~p-~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 475 (643)
|+..+--.+.-++.++...+ +++.++++. ...| +.. ..--|.-++.+.|++++|.+..+.+++.+|+|..
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 44444444444555544433 333444333 1112 222 2333455788999999999999999999998863
No 270
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=69.68 E-value=64 Score=34.34 Aligned_cols=44 Identities=5% Similarity=0.044 Sum_probs=28.2
Q ss_pred hHHHHHHHHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHc
Q 045672 41 SLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLA 86 (643)
Q Consensus 41 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 86 (643)
.| ++|--+.|.|++++|.++.++.... +.--...|...+..++.
T Consensus 155 ~W-a~IyY~LR~G~~~~A~e~~~~~~~~-~~~~d~~F~~~l~~~~~ 198 (661)
T 2qx5_A 155 IW-ALIFYLLRAGLIKEALQVLVENKAN-IKKVEQSFLTYFKAYAS 198 (661)
T ss_dssp HH-HHHHHHHTTTCHHHHHHHHHHTGGG-C-----CHHHHHHHC--
T ss_pred cH-HHHHHHHhcCCHHHHHHHHHHhhhh-HhhhhHHHHHHHHHHHh
Confidence 56 5788899999999999998776531 11112456667777763
No 271
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=69.38 E-value=9 Score=35.36 Aligned_cols=58 Identities=21% Similarity=0.196 Sum_probs=38.9
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 045672 416 DLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQD 473 (643)
Q Consensus 416 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 473 (643)
..+.+.|.+++|++....- ..+| |...-..|+..++..|++++|..-++...+++|..
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 3456777777777665443 3334 55555666777778888888888888777777753
No 272
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=66.97 E-value=79 Score=29.12 Aligned_cols=53 Identities=15% Similarity=0.024 Sum_probs=28.4
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 045672 347 LAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKK 400 (643)
Q Consensus 347 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 400 (643)
..+.|..++|++....-++.. +-|...-..++.-+|-.|+++.|..-++...+
T Consensus 7 ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 345566666666665555542 22333444455555666666666655555544
No 273
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=64.14 E-value=64 Score=28.24 Aligned_cols=105 Identities=14% Similarity=0.181 Sum_probs=70.6
Q ss_pred HHHHHHHHhC-CCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCcchHHHHHHHHHccCChhHHHHHHH
Q 045672 425 QEAVKLIHEM-PYEPDAVT---WRALLGACKVHRNTDLAICAAKKILN--LDPQDPGTYILLSNIYANSQKWDEVAEVRK 498 (643)
Q Consensus 425 ~~A~~~~~~m-~~~p~~~~---~~~ll~~~~~~g~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 498 (643)
+++...|... ..+.|..- |-..+..| ..++...+..+|..+.. ++-.-+..|...+..+...|++.+|.++++
T Consensus 61 Erc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~ 139 (202)
T 3esl_A 61 ERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLE 139 (202)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3444455444 23456543 44444433 24457788889988876 556677789999999999999999999999
Q ss_pred HHHhCCCCcCCceeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHhCCcccC
Q 045672 499 TMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPD 555 (643)
Q Consensus 499 ~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~~~~~g~~~d 555 (643)
.=.+++-.|. ..+.....+....|.+.+++.|
T Consensus 140 ~GI~~~A~P~-------------------------~rL~~~~~~F~~R~~~~~~~~~ 171 (202)
T 3esl_A 140 LGAENNCRPY-------------------------NRLLRSLSNYEDRLREMNIVEN 171 (202)
T ss_dssp HHHHTTCBSH-------------------------HHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHcCCccH-------------------------HHHHHHHHHHHHHHHhcCCCCC
Confidence 8888775532 3344445677778888877433
No 274
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=63.21 E-value=37 Score=27.34 Aligned_cols=64 Identities=11% Similarity=0.092 Sum_probs=33.2
Q ss_pred HHHHHHHHcCCChhHHHHHHccCCCCC---cchHHHHHHHHHhCCC--hhHHHHHHHHHHHCCCCCChh
Q 045672 113 NILLNMHVKFSLLEEAQVLFDQMPERN---VVSWTTMISAYCDAKM--NDKALELLIFMLREGVRPNMF 176 (643)
Q Consensus 113 ~~li~~~~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~ 176 (643)
+.++.-|...|+.++|.+.++++..|. .+....+..++-+.+. .+.+..++..+...|+-+...
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q 79 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 79 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 445566666666666666666665441 1233334444444332 245556666666555444433
No 275
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=61.52 E-value=81 Score=27.38 Aligned_cols=154 Identities=12% Similarity=0.061 Sum_probs=70.6
Q ss_pred CCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCChhHHHHHHccCCCCCcchHHHHHHHHH
Q 045672 72 ADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYC 151 (643)
Q Consensus 72 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~ 151 (643)
+|...-...+.++...+..+. ...+..+++ .++..+-...+..+.+.|+.+....+.+.+..+|...-...+.++.
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~~-~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~ 106 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDERA-VEPLIKALK---DEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALG 106 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCccH-HHHHHHHHc---CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 455554555555555554322 222222222 3455555555555555555444444444444455544444455555
Q ss_pred hCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHh
Q 045672 152 DAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFN 231 (643)
Q Consensus 152 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~ 231 (643)
+.|..+ +...+.++. -.++..+-...+.++.+.|.-+....+.+
T Consensus 107 ~~~~~~-~~~~L~~~l-----------------------------------~d~~~~vr~~a~~aL~~~~~~~~~~~L~~ 150 (211)
T 3ltm_A 107 QIGDER-AVEPLIKAL-----------------------------------KDEDWFVRIAAAFALGEIGDERAVEPLIK 150 (211)
T ss_dssp HHCCGG-GHHHHHHHT-----------------------------------TCSSHHHHHHHHHHHHHHCCGGGHHHHHH
T ss_pred HhCcHH-HHHHHHHHH-----------------------------------hCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 444432 222222222 12344444445555555555443333444
Q ss_pred hCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHH
Q 045672 232 EMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKR 266 (643)
Q Consensus 232 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 266 (643)
.+.+++...-...+.++.+.+. .++...+..+.+
T Consensus 151 ~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 151 ALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp HTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 4444555444445555555544 445555555554
No 276
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=60.76 E-value=1.1e+02 Score=28.80 Aligned_cols=23 Identities=9% Similarity=0.138 Sum_probs=13.6
Q ss_pred HHHHHHHHccCCHHHHHHHHHHH
Q 045672 78 AELIKCCLARHAVEEAKLVHNHV 100 (643)
Q Consensus 78 ~~ll~~~~~~~~~~~a~~~~~~~ 100 (643)
..++.-|...|+.++|...++++
T Consensus 7 ~~ii~EYf~~~d~~Ea~~~l~el 29 (307)
T 2zu6_B 7 TPIIQEYFEHGDTNEVAEMLRDL 29 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh
Confidence 44555566666666666666554
No 277
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=58.17 E-value=90 Score=26.81 Aligned_cols=61 Identities=18% Similarity=0.232 Sum_probs=28.0
Q ss_pred CchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHH
Q 045672 205 SDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKR 266 (643)
Q Consensus 205 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 266 (643)
++..+-...+.++++.+.-+....+...+.+++...-...+.++.+.|. .++...+..+..
T Consensus 119 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-~~~~~~L~~~l~ 179 (201)
T 3ltj_A 119 EDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLAE 179 (201)
T ss_dssp SSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 3444444455555555554333333344444444444444444444443 344445544443
No 278
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=57.29 E-value=1.1e+02 Score=27.66 Aligned_cols=58 Identities=17% Similarity=0.163 Sum_probs=29.2
Q ss_pred HHHHHHcCCHHHHHHHHhhCC-C---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC
Q 045672 214 IDIYAKLGELRNAECVFNEMP-T---RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAAD 272 (643)
Q Consensus 214 i~~y~~~g~~~~A~~~f~~~~-~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 272 (643)
+...+..|+.+-+..+++... . .|..-++.+..+ +..+......++++.+.+.|..++
T Consensus 152 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a-~~~~~~~~~~~i~~~Ll~~g~~~~ 213 (285)
T 1wdy_A 152 LMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHA-LLSSDDSDVEAITHLLLDHGADVN 213 (285)
T ss_dssp HHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHH-HHCSCTTTHHHHHHHHHHTTCCSS
T ss_pred HHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHH-HHccccchHHHHHHHHHHcCCCCC
Confidence 334455677776666665522 1 222223333332 344555445566666666666554
No 279
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=56.97 E-value=1.5e+02 Score=29.10 Aligned_cols=280 Identities=10% Similarity=0.029 Sum_probs=147.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhCCC--------CCcchHHHHHHHHHhC-CChhHHHHHHHHHHHcCCCCCHHHH----
Q 045672 210 RSALIDIYAKLGELRNAECVFNEMPT--------RDLVVWNSIIGGFAQN-SDVDEALNLYKRMKRAGFAADQSTL---- 276 (643)
Q Consensus 210 ~~~li~~y~~~g~~~~A~~~f~~~~~--------~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~t~---- 276 (643)
...|...|.+.|+.++..+++..... +....-..++..+... +..+.-.++..+..+.. +-+..+|
T Consensus 22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~flr~~ 100 (394)
T 3txn_A 22 ILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFLRQS 100 (394)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 34577888888888888888877654 1223455666666654 33344444444444321 1111222
Q ss_pred --HHHHHHHhcCChhHhHHHHHHHHhh-c-C--Cc---hhHHhHHHHHHHhcCCHHHHHHHHhhcCC------CChhhH-
Q 045672 277 --TSVLRACTGLALLELGTQVHVHVLK-Y-D--HD---LILNNALLDMYCKCGSLEDAMSVFSRMIQ------KDVISW- 340 (643)
Q Consensus 277 --~~ll~a~~~~~~~~~a~~i~~~~~~-~-~--~~---~~~~~~Li~~y~~~g~~~~A~~~~~~m~~------~~~~~~- 340 (643)
.-+...+...|++..|..++..+.+ . . .. ..++-.-+.+|...|++.++...+..... +++..-
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a 180 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQG 180 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHH
Confidence 1456667778888888777777766 1 1 11 23445556778888888888777765411 122111
Q ss_pred ---HHHHHHHH-hcCCHHHHHHHHHHHHHC-C--CCCC---HHHHHHHHHHHhccCCHHHHHHHHH-HhHHhcCCCCChH
Q 045672 341 ---STMISGLA-QNGYSQEALKLFESMKVS-R--IKPN---YITIVGVLFACSHAGFVEDGWNHFK-SMKKFYGIDPGRE 409 (643)
Q Consensus 341 ---~~li~~~~-~~g~~~~A~~l~~~m~~~-g--~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~-~~~~~~~~~p~~~ 409 (643)
-.-...+. ..+++.+|...|-+.... . ..|. ...| .++.+... ++..+-..++. .....+ ..|+..
T Consensus 181 ~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkY-lvL~aLl~-~~r~el~~~l~~~~~~~~-~~pei~ 257 (394)
T 3txn_A 181 ALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKY-MLLCKIML-GQSDDVNQLVSGKLAITY-SGRDID 257 (394)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHH-HHHHHHHT-TCGGGHHHHHHSHHHHTT-CSHHHH
T ss_pred HHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHH-HHHHHHHc-CCHHHHHHHhcccccccc-CCccHH
Confidence 11122345 678888888877665321 0 0121 1122 22222222 22222222221 211212 345565
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 045672 410 HYSCMIDLLGRAGKLQEAVKLIHEMP--YEPDAVTW---RALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIY 484 (643)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~---~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 484 (643)
.+..++.+| +.+++.+..++++... +..|.... ..+....+ ...+.++ ..|-....+..++..+
T Consensus 258 ~l~~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir--------~~~L~~i--~~pYsrIsl~~iA~~l 326 (394)
T 3txn_A 258 AMKSVAEAS-HKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTML--------EQNLCRI--IEPYSRVQVAHVAESI 326 (394)
T ss_dssp HHHHHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHH--------HHHHHHH--HTTCSEEEHHHHHHHH
T ss_pred HHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH--------HHHHHHH--hHhhceeeHHHHHHHH
Confidence 666666665 5567777777776652 34455431 11111111 1112222 2455556777777776
Q ss_pred HccCChhHHHHHHHHHHhCCCC
Q 045672 485 ANSQKWDEVAEVRKTMRARGIT 506 (643)
Q Consensus 485 ~~~g~~~~a~~~~~~m~~~g~~ 506 (643)
.- ..+++....-+|...|.-
T Consensus 327 ~l--s~~evE~~L~~lI~dg~I 346 (394)
T 3txn_A 327 QL--PMPQVEKKLSQMILDKKF 346 (394)
T ss_dssp TC--CHHHHHHHHHHHHHTTSS
T ss_pred Cc--CHHHHHHHHHHHHHCCCe
Confidence 54 678999999999988753
No 280
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=56.26 E-value=50 Score=33.07 Aligned_cols=96 Identities=8% Similarity=-0.052 Sum_probs=62.2
Q ss_pred HHhHHHHHHHhcCCHHHHHHHHhhcCCC------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCCHHHHH--
Q 045672 308 LNNALLDMYCKCGSLEDAMSVFSRMIQK------DVISWSTMISGLAQNGYSQEALKLFESMKV---SRIKPNYITIV-- 376 (643)
Q Consensus 308 ~~~~Li~~y~~~g~~~~A~~~~~~m~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~---~g~~p~~~t~~-- 376 (643)
+...+.+.|.++|+++.|.+.|.++... -+..+-..|..+...+++..+...+.+... .+-.|+...-.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 4456788888888888888888887432 234566677888888888888888877643 23233322111
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcC
Q 045672 377 GVLFACSHAGFVEDGWNHFKSMKKFYG 403 (643)
Q Consensus 377 ~ll~a~~~~g~~~~a~~~~~~~~~~~~ 403 (643)
.-...+...+++..|-..|-+....+.
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhChHHHHHHHHHHHhccCC
Confidence 112224566888888888877766433
No 281
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=55.91 E-value=25 Score=35.38 Aligned_cols=57 Identities=5% Similarity=-0.055 Sum_probs=25.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 045672 411 YSCMIDLLGRAGKLQEAVKLIHEM-----PYEPDAVTWRALLGACKVHRNTDLAICAAKKIL 467 (643)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m-----~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 467 (643)
...+.+.|.+.|++++|.+.+.++ ....-...+...+..+...+++..+...+.++.
T Consensus 134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 134 WINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 334444444444444444444444 111122234444444445555555555555443
No 282
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=55.74 E-value=1e+02 Score=26.70 Aligned_cols=47 Identities=21% Similarity=0.280 Sum_probs=20.1
Q ss_pred chhHHHHHHHHHHHcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhCC
Q 045672 206 DVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNS 252 (643)
Q Consensus 206 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g 252 (643)
+..+-...+..+.+.|..+....+.+.+.++|...-...+.++.+.+
T Consensus 32 ~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~ 78 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIG 78 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhC
Confidence 33444444444455554333333444444444443333444444444
No 283
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=53.99 E-value=37 Score=28.26 Aligned_cols=62 Identities=11% Similarity=0.125 Sum_probs=30.4
Q ss_pred HHHHHHHHcCCChhHHHHHHccCCCCC---cchHHHHHHHHHhCCC--hhHHHHHHHHHHHCCCCCC
Q 045672 113 NILLNMHVKFSLLEEAQVLFDQMPERN---VVSWTTMISAYCDAKM--NDKALELLIFMLREGVRPN 174 (643)
Q Consensus 113 ~~li~~~~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~ 174 (643)
+.++.-|...|+.++|.+.++++..|. .+....+..++-+.++ .+.+..++..+...|+-+.
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 445555555666666666666655431 1223333334443222 2345556666655554433
No 284
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=49.50 E-value=46 Score=32.19 Aligned_cols=18 Identities=0% Similarity=-0.034 Sum_probs=10.6
Q ss_pred HHHHHcCCHHHHHHHHhh
Q 045672 215 DIYAKLGELRNAECVFNE 232 (643)
Q Consensus 215 ~~y~~~g~~~~A~~~f~~ 232 (643)
...+..|+.+-+..+++.
T Consensus 178 ~~A~~~g~~~~v~~Ll~~ 195 (364)
T 3ljn_A 178 MRAMEFRNREALDLMMDT 195 (364)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHhc
Confidence 334456666666666654
No 285
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=49.20 E-value=45 Score=29.57 Aligned_cols=113 Identities=9% Similarity=0.051 Sum_probs=51.5
Q ss_pred HHhCCCcchHHHHHHHHHhCCCCCCHh--hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhH---HHHHHHHHHcCC
Q 045672 49 FCYQRDLPRAMKAMHAMQCHGVRADSV--TYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFL---VNILLNMHVKFS 123 (643)
Q Consensus 49 ~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~---~~~li~~~~~~g 123 (643)
.++.|+.+... .+.+.|..++.. .-.+.+...+..|+.+-.+ .+++.|..++... ....+...+..|
T Consensus 16 A~~~g~~~~~~----~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~----~Ll~~~~~~~~~~~~~~~t~L~~A~~~~ 87 (240)
T 3eu9_A 16 ATQYGIYERCR----ELVEAGYDVRQPDKENVTLLHWAAINNRIDLVK----YYISKGAIVDQLGGDLNSTPLHWATRQG 87 (240)
T ss_dssp HHHTTCHHHHH----HHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHH----HHHHTTCCTTCCBTTTTBCHHHHHHHHT
T ss_pred HHHcCChHHHH----HHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHH----HHHHcCCcchhhcCCcCCChhHHHHHcC
Confidence 45566655444 344455444321 1123445555667765444 4444544332111 122344445567
Q ss_pred ChhHHHHHHccCCCC---CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC
Q 045672 124 LLEEAQVLFDQMPER---NVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPN 174 (643)
Q Consensus 124 ~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 174 (643)
+.+-+..+++.-..+ +...++.+. ..+..|+.+ +++.+.+.|..++
T Consensus 88 ~~~~v~~Ll~~g~~~~~~~~~g~t~l~-~A~~~~~~~----~~~~Ll~~~~~~~ 136 (240)
T 3eu9_A 88 HLSMVVQLMKYGADPSLIDGEGCSCIH-LAAQFGHTS----IVAYLIAKGQDVD 136 (240)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHHH-HHHHTTCHH----HHHHHHHTTCCTT
T ss_pred CHHHHHHHHHcCCCCcccCCCCCCHHH-HHHHcCHHH----HHHHHHhcCCCcc
Confidence 777666666543332 222233333 334445543 4444555555443
No 286
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=48.35 E-value=70 Score=25.66 Aligned_cols=62 Identities=18% Similarity=0.241 Sum_probs=43.1
Q ss_pred hHHHHHHHhcCCHHHHHHHHhhcCCCC---hhhHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCC
Q 045672 310 NALLDMYCKCGSLEDAMSVFSRMIQKD---VISWSTMISGLAQNGY--SQEALKLFESMKVSRIKPN 371 (643)
Q Consensus 310 ~~Li~~y~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~ 371 (643)
+.++.-|...|+.++|.+.++++..|. .+...++..++-+.++ .+.+..++..+...|+-+.
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 568888989999999999999987652 2344555555555542 3567778888877775443
No 287
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=47.41 E-value=1.3e+02 Score=25.63 Aligned_cols=50 Identities=22% Similarity=0.316 Sum_probs=24.8
Q ss_pred CCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhCCC
Q 045672 204 ESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSD 253 (643)
Q Consensus 204 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~ 253 (643)
.+|..+....+..+.+.|.-+....+.+.+.+++...-...+.++...|.
T Consensus 25 ~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~ 74 (201)
T 3ltj_A 25 DDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGD 74 (201)
T ss_dssp CSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC
Confidence 34455555555555666654444445555555554444444444444443
No 288
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=47.32 E-value=58 Score=29.72 Aligned_cols=21 Identities=5% Similarity=-0.037 Sum_probs=12.0
Q ss_pred HHHHHHHcCCHHHHHHHHhhC
Q 045672 213 LIDIYAKLGELRNAECVFNEM 233 (643)
Q Consensus 213 li~~y~~~g~~~~A~~~f~~~ 233 (643)
.+...++.|+++....+++.-
T Consensus 8 ~L~~A~~~g~~~~v~~Ll~~g 28 (285)
T 1wdy_A 8 LLIKAVQNEDVDLVQQLLEGG 28 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHcC
Confidence 444455566666666666543
No 289
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=45.91 E-value=1.3e+02 Score=24.96 Aligned_cols=80 Identities=10% Similarity=0.014 Sum_probs=51.6
Q ss_pred HHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCcchHHHHHHHHHccCChhHHHHHHHHHH
Q 045672 425 QEAVKLIHEM-PYEPDAVTWRALLGACKVHRNTDLAICAAKKILN--LDPQDPGTYILLSNIYANSQKWDEVAEVRKTMR 501 (643)
Q Consensus 425 ~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 501 (643)
+.+.+.|... ..+.|..-...-+.--... +.+..+|..+.. ++-.-+..|...+..+...|++++|.++++.-.
T Consensus 52 Erc~~~f~~~~~YknD~RyLklWl~ya~~~---~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi 128 (152)
T 4a1g_A 52 EHLMKEFLDKKKYHNDPRFISYCLKFAEYN---SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGI 128 (152)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHHHTTB---SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHhc---CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445556544 2345655333333221122 237778888875 445567788899999999999999999998888
Q ss_pred hCCCCc
Q 045672 502 ARGITK 507 (643)
Q Consensus 502 ~~g~~~ 507 (643)
+++-.|
T Consensus 129 ~~~A~P 134 (152)
T 4a1g_A 129 QNQAEP 134 (152)
T ss_dssp HTTCBS
T ss_pred HcCCcc
Confidence 776553
No 290
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=43.99 E-value=7.5 Score=23.58 Aligned_cols=17 Identities=35% Similarity=0.755 Sum_probs=11.9
Q ss_pred CCccccc-CCcccCCCCC
Q 045672 626 PIRYHHF-QDGNCSCGDY 642 (643)
Q Consensus 626 ~~~~h~~-~~g~~s~~~~ 642 (643)
|-.-|.. .+|.|||+-|
T Consensus 12 CPkPHRL~~~~~C~CG~y 29 (42)
T 2l0z_A 12 CPLPHRLNSLGGCRCGKY 29 (42)
T ss_dssp CCTTSCCCTTSSBTTTTB
T ss_pred CCCCceecCCceeccccc
Confidence 4444555 6899999976
No 291
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=43.65 E-value=1.8e+02 Score=28.64 Aligned_cols=83 Identities=10% Similarity=0.081 Sum_probs=39.3
Q ss_pred HHHHHhCCCcchHHHHHHHHHhCCCCCCHhh--HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchh--HHHHHHHHHHc
Q 045672 46 FTRFCYQRDLPRAMKAMHAMQCHGVRADSVT--YAELIKCCLARHAVEEAKLVHNHVLSGGFEPETF--LVNILLNMHVK 121 (643)
Q Consensus 46 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~ 121 (643)
+..-+..|+.+-+ +.+.+.|..|+... ..+.+...+..|+.+-++.++ +.|..++.. ...+.+...++
T Consensus 18 L~~Aa~~g~~~~v----~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~g~t~L~~A~~ 89 (437)
T 1n11_A 18 LHVASFMGHLPIV----KNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLL----QNKAKVNAKAKDDQTPLHCAAR 89 (437)
T ss_dssp HHHHHHHTCHHHH----HHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHH----HHTCCSSCCCTTSCCHHHHHHH
T ss_pred HHHHHHCCCHHHH----HHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH----hCCCCCCCCCCCCCCHHHHHHH
Confidence 3334455665543 34444565554321 223444555667766554444 344433221 11223344455
Q ss_pred CCChhHHHHHHccCC
Q 045672 122 FSLLEEAQVLFDQMP 136 (643)
Q Consensus 122 ~g~~~~A~~~f~~m~ 136 (643)
.|..+-+.-+++.-.
T Consensus 90 ~g~~~~v~~Ll~~ga 104 (437)
T 1n11_A 90 IGHTNMVKLLLENNA 104 (437)
T ss_dssp HTCHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHhCCC
Confidence 677766666666543
No 292
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=41.28 E-value=2.5e+02 Score=27.07 Aligned_cols=73 Identities=10% Similarity=0.102 Sum_probs=41.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCC--hhHHHHHHccCCCCCcchHHHHHHHHHh
Q 045672 77 YAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL--LEEAQVLFDQMPERNVVSWTTMISAYCD 152 (643)
Q Consensus 77 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~--~~~A~~~f~~m~~~~~~~~~~li~~~~~ 152 (643)
...++.-|...++.+++.+.++.+..... .......+|..-...++ -+.+-.++..+. .++.+-..+..+|..
T Consensus 57 ~~~ii~EYf~~~d~~Ea~~~l~eL~~p~~--~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~-~~~ls~~~i~~gf~~ 131 (358)
T 3eiq_C 57 LTPIIQEYFEHGDTNEVAEMLRDLNLGEM--KSGVPVLAVSLALEGKASHREMTSKLLSDLC-GTVMSTNDVEKSFDK 131 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTTCCGG--GGGHHHHHHHHHTTSCHHHHHHHHHHHHTTT-TTSCCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhCCchh--HHHHHHHHHHHHhcCChHHHHHHHHHHHHHH-hCCCCHHHHHHHHHH
Confidence 45666777778888888887777632111 22333444444333332 344556666666 366666666666643
No 293
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=40.85 E-value=1.6e+02 Score=24.70 Aligned_cols=80 Identities=11% Similarity=0.114 Sum_probs=51.1
Q ss_pred HHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCcchHHHHHHHHHccCChhHHHHHHHHHH
Q 045672 425 QEAVKLIHEM-PYEPDAVTWRALLGACKVHRNTDLAICAAKKILN--LDPQDPGTYILLSNIYANSQKWDEVAEVRKTMR 501 (643)
Q Consensus 425 ~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 501 (643)
+.+.+.|..- ..+.|......-+.--...++ +..+|..+.. ++-.-+..|...+..+...|++.+|.++++.-.
T Consensus 47 Erc~~~f~~~~~YknD~RyLklWl~ya~~~~~---p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi 123 (164)
T 2wvi_A 47 ERAVEALQGEKRYYSDPRFLNLWLKLGRLCNE---PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGI 123 (164)
T ss_dssp HHHHHHTTTCGGGTTCHHHHHHHHHHHHHCSC---HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhccCHHHHHHHHHHHHhcCC---HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444443 234565543333322222233 5567777765 456667788899999999999999999999888
Q ss_pred hCCCCc
Q 045672 502 ARGITK 507 (643)
Q Consensus 502 ~~g~~~ 507 (643)
+++..|
T Consensus 124 ~~~A~P 129 (164)
T 2wvi_A 124 QQKAEP 129 (164)
T ss_dssp HTTCBS
T ss_pred HcCCCc
Confidence 877554
No 294
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=40.11 E-value=85 Score=28.30 Aligned_cols=23 Identities=4% Similarity=0.070 Sum_probs=18.2
Q ss_pred HHHHHHhCCCcchHHHHHHHHHh
Q 045672 45 DFTRFCYQRDLPRAMKAMHAMQC 67 (643)
Q Consensus 45 li~~~~~~g~~~~A~~~~~~m~~ 67 (643)
-|..+....++++|++++++..+
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 46677888899999998887653
No 295
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=38.81 E-value=59 Score=27.01 Aligned_cols=65 Identities=17% Similarity=0.279 Sum_probs=44.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhCCCCC---cchHHHHHHHHHhCCC--hhHHHHHHHHHHHcCCCCCHH
Q 045672 210 RSALIDIYAKLGELRNAECVFNEMPTRD---LVVWNSIIGGFAQNSD--VDEALNLYKRMKRAGFAADQS 274 (643)
Q Consensus 210 ~~~li~~y~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~ 274 (643)
.+.++.-|...|+.++|.+.++++..|. .+....+..++-+.++ .+.+..++..+...|+-+...
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q 81 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 81 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 3568888999999999999999997652 2344455555555332 456777888887777555433
No 296
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=38.46 E-value=1.3e+02 Score=26.52 Aligned_cols=17 Identities=0% Similarity=-0.042 Sum_probs=9.1
Q ss_pred HHHcCCHHHHHHHHhhC
Q 045672 217 YAKLGELRNAECVFNEM 233 (643)
Q Consensus 217 y~~~g~~~~A~~~f~~~ 233 (643)
.+..|+.+-+..+++..
T Consensus 86 A~~~~~~~~~~~Ll~~~ 102 (241)
T 1k1a_A 86 ACEHRSPTCLRALLDSA 102 (241)
T ss_dssp HHHTTCHHHHHHHHHHS
T ss_pred HHHcCCHHHHHHHHHcC
Confidence 34455655555555543
No 297
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=38.05 E-value=1.5e+02 Score=25.12 Aligned_cols=57 Identities=11% Similarity=0.144 Sum_probs=26.3
Q ss_pred HHHHcCCHHHHHHHHhhC-CC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC
Q 045672 216 IYAKLGELRNAECVFNEM-PT---RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAAD 272 (643)
Q Consensus 216 ~y~~~g~~~~A~~~f~~~-~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 272 (643)
..+..|+.+-+..+++.- .. +|..-++.+..+.........-.++.+.+.+.|..++
T Consensus 112 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 112 PAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQS 172 (201)
T ss_dssp HHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCC
Confidence 344556666666666554 21 2333333443333322223333455555666665554
No 298
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=37.29 E-value=1.1e+02 Score=29.05 Aligned_cols=61 Identities=15% Similarity=0.179 Sum_probs=44.6
Q ss_pred HHHhCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCC
Q 045672 430 LIHEMPYEPDA--VTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARG 504 (643)
Q Consensus 430 ~~~~m~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 504 (643)
+|...+++|.. .++.+-++.+.+++|+..|..+.++++++.|+.. ..++|+++...-...+
T Consensus 186 YFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~~~qArkil~~ce~~~ 248 (320)
T 3mkr_B 186 YFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKPE--------------VAQQTRKILSACEKNP 248 (320)
T ss_dssp HHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCHH--------------HHHHHHHHHHHHHHSC
T ss_pred HhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcCC
Confidence 45555666643 3677778889999999999999999999988521 3456777777666543
No 299
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=37.02 E-value=2.1e+02 Score=24.94 Aligned_cols=49 Identities=18% Similarity=0.224 Sum_probs=23.1
Q ss_pred HHHHHHHHhhcCCC-----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 045672 322 LEDAMSVFSRMIQK-----DVISWSTMISGLAQNGYSQEALKLFESMKVSRIKP 370 (643)
Q Consensus 322 ~~~A~~~~~~m~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 370 (643)
..++..+|..|... -..-|......+...|++.+|.++|+.-++.+-.|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 44555555544222 12234444444455555555555555555544444
No 300
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=34.87 E-value=1.2e+02 Score=27.40 Aligned_cols=88 Identities=8% Similarity=-0.020 Sum_probs=44.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH--CCCCC----CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 045672 343 MISGLAQNGYSQEALKLFESMKV--SRIKP----NYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMID 416 (643)
Q Consensus 343 li~~~~~~g~~~~A~~l~~~m~~--~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 416 (643)
-++.+..+.++++|.+++++... .++++ +.......+..-.....-.-+..+.+.+.. .++.......+.
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~----~~~~~~~r~~v~ 99 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS----SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT----CSSHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCHHHHHHHHH
Confidence 35566667777777777765532 11221 111122222222222222223333333321 445556666778
Q ss_pred HHHhcCCHHHHHHHHHhC
Q 045672 417 LLGRAGKLQEAVKLIHEM 434 (643)
Q Consensus 417 ~~~~~g~~~~A~~~~~~m 434 (643)
.+.|.|+.++|.++|-+.
T Consensus 100 ~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHH
Confidence 888888888888877543
No 301
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=33.78 E-value=1.2e+02 Score=25.85 Aligned_cols=52 Identities=12% Similarity=0.127 Sum_probs=25.8
Q ss_pred HHHHcCCHHHHHHHHhhCC-C---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC
Q 045672 216 IYAKLGELRNAECVFNEMP-T---RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAAD 272 (643)
Q Consensus 216 ~y~~~g~~~~A~~~f~~~~-~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 272 (643)
..+..|+.+....++..-. . .|..-++.+..+ ++.|+. ++++.+.+.|..++
T Consensus 11 ~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A-~~~~~~----~~v~~Ll~~g~~~~ 66 (201)
T 3hra_A 11 EAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIA-VHNNDI----EIAKALIDRGADIN 66 (201)
T ss_dssp HHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHH-HHHTCH----HHHHHHHHTTCCTT
T ss_pred HHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHH-HHcCCH----HHHHHHHHcCCCCC
Confidence 3455677777777776544 2 222233333333 344553 34444455555544
No 302
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=31.68 E-value=2.2e+02 Score=23.59 Aligned_cols=45 Identities=9% Similarity=-0.063 Sum_probs=22.3
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 045672 356 ALKLFESMKVSRIKPN-YITIVGVLFACSHAGFVEDGWNHFKSMKK 400 (643)
Q Consensus 356 A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 400 (643)
+.++|..|...|+--. ..-|......+...|++.+|.++|+.-.+
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~ 129 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQ 129 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4555555555554333 23334444444555555555555555544
No 303
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=31.65 E-value=2e+02 Score=25.08 Aligned_cols=113 Identities=17% Similarity=0.171 Sum_probs=53.9
Q ss_pred HHHhCCCcchHHHHHHHHHhCCCCCCH---hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchh--HHHHHHHHHHcC
Q 045672 48 RFCYQRDLPRAMKAMHAMQCHGVRADS---VTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETF--LVNILLNMHVKF 122 (643)
Q Consensus 48 ~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~ 122 (643)
..+..|+.+ +++.+.+.|..++. .-.+ .+...+..|+.+.+ +.+++.|..++.. .....+...+..
T Consensus 17 ~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 87 (237)
T 3b7b_A 17 AAAEAGHVD----ICHMLVQAGANIDTCSEDQRT-PLMEAAENNHLEAV----KYLIKAGALVDPKDAEGSTCLHLAAKK 87 (237)
T ss_dssp HHHHHTCHH----HHHHHHHTTCCTTCCCTTCCC-HHHHHHHTTCHHHH----HHHHTTTCCCCCCCTTSCCHHHHHHHT
T ss_pred HHHHcCcHH----HHHHHHHcCCCcCccCCCCCC-HHHHHHHhCCHHHH----HHHHhCCCCCCCCCCCCCcHHHHHHHc
Confidence 344556654 44444555654433 2222 33444455776544 4444555443321 112234445567
Q ss_pred CChhHHHHHHccCC-C---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC
Q 045672 123 SLLEEAQVLFDQMP-E---RNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPN 174 (643)
Q Consensus 123 g~~~~A~~~f~~m~-~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 174 (643)
|+.+-+..+++.-. . ++...++.+. ..+..|+. ++++.+.+.|..++
T Consensus 88 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~-~A~~~~~~----~~~~~Ll~~g~~~~ 138 (237)
T 3b7b_A 88 GHYEVVQYLLSNGQMDVNCQDDGGWTPMI-WATEYKHV----DLVKLLLSKGSDIN 138 (237)
T ss_dssp TCHHHHHHHHTTTCCCTTCCCTTSCCHHH-HHHHTTCH----HHHHHHHHTTCCTT
T ss_pred CCHHHHHHHHhCCCCCcccCCCCCCCHHH-HHHHcCCH----HHHHHHHHCCCCCC
Confidence 77777777776542 1 2222333333 33344544 34455555665554
No 304
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=31.15 E-value=3.4e+02 Score=27.22 Aligned_cols=25 Identities=20% Similarity=0.171 Sum_probs=11.2
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHH
Q 045672 73 DSVTYAELIKCCLARHAVEEAKLVH 97 (643)
Q Consensus 73 ~~~~~~~ll~~~~~~~~~~~a~~~~ 97 (643)
-...|..-.+.+...|++++|..+-
T Consensus 360 Ad~L~~~~F~~l~~~g~y~~AA~~a 384 (494)
T 1bpo_A 360 AEELFARKFNALFAQGNYSEAAKVA 384 (494)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3333444444444445554444433
No 305
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=29.90 E-value=4.7e+02 Score=29.19 Aligned_cols=85 Identities=5% Similarity=-0.187 Sum_probs=50.4
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCC-C---------------
Q 045672 378 VLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMP--YEP-D--------------- 439 (643)
Q Consensus 378 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p-~--------------- 439 (643)
++..|...|..+-+.++.. -.+.++..--.+..+|...|++++|.+.|+++. +.. +
T Consensus 816 l~~~L~~~~~~~~a~eL~~------~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIG------WLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGG------GCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHh------hcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCc
Confidence 5566667777766554332 122233333345667778888888888888762 111 0
Q ss_pred -------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 045672 440 -------AVTWRALLGACKVHRNTDLAICAAKKILN 468 (643)
Q Consensus 440 -------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 468 (643)
..-|.-++..+-+++-++.+.++.+.+++
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~ 925 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADA 925 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 11345555666677777777777777775
No 306
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=28.05 E-value=2.4e+02 Score=28.78 Aligned_cols=118 Identities=10% Similarity=0.040 Sum_probs=66.9
Q ss_pred chHHHHHHHHHhCCCcchHHHHHHHHHhCCC-CCCH--hhH-HHHHHHHHccCCHHHHHHHHHHHHHcCCCCchh-----
Q 045672 40 SSLLDDFTRFCYQRDLPRAMKAMHAMQCHGV-RADS--VTY-AELIKCCLARHAVEEAKLVHNHVLSGGFEPETF----- 110 (643)
Q Consensus 40 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~--~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~----- 110 (643)
..+|.+++.|...+.++.|..+..+..-.-. .+|. .+| -.+.+...-.+++.+|.+.+....+.-+.....
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a~gfr~ 311 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKSLGFLQ 311 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSCSHHHH
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhhhhHHH
Confidence 4689999999999999999999998751100 1111 122 223455667789999998888887653322211
Q ss_pred -H--HHHHHHHHHcCCChhHHHHHHccCC-CCCcchHHHHHHHHHhCCChhHHHH
Q 045672 111 -L--VNILLNMHVKFSLLEEAQVLFDQMP-ERNVVSWTTMISAYCDAKMNDKALE 161 (643)
Q Consensus 111 -~--~~~li~~~~~~g~~~~A~~~f~~m~-~~~~~~~~~li~~~~~~g~~~~A~~ 161 (643)
+ |..++.++ .|++.+ ..+|..-. ++....|..|..++ +.|+..+-..
T Consensus 312 ~a~K~lI~V~LL--lG~iP~-r~lf~q~~l~~~L~pY~~Lv~Av-r~GdL~~F~~ 362 (523)
T 4b4t_S 312 QSNKLHCCIQLL--MGDIPE-LSFFHQSNMQKSLLPYYHLTKAV-KLGDLKKFTS 362 (523)
T ss_dssp HHHHHHHHHHHH--HTCCCC-HHHHTTTSCHHHHHHHHHHHHHH-HHTCHHHHHH
T ss_pred HHHHHHHhHHhh--cCCCCC-hHHhhchhHHHHHHHHHHHHHHH-HcCCHHHHHH
Confidence 1 22233333 366554 33343211 11234577666665 5566554333
No 307
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=27.67 E-value=3e+02 Score=23.86 Aligned_cols=86 Identities=13% Similarity=0.121 Sum_probs=39.6
Q ss_pred HHHHHhCCCcchHHHHHHHHHhCCCCCCHhh--HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhH--HHHHHHHHHc
Q 045672 46 FTRFCYQRDLPRAMKAMHAMQCHGVRADSVT--YAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFL--VNILLNMHVK 121 (643)
Q Consensus 46 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~ 121 (643)
+...++.|+.+.+..+++.+.+.|..++... -.+.+...+..|+.+ +.+.+++.|..++... ....+...+.
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~ 88 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLACE 88 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHHHH
Confidence 3344556777666666666555554443221 112333344455554 3334444554433211 1122333344
Q ss_pred CCChhHHHHHHccC
Q 045672 122 FSLLEEAQVLFDQM 135 (643)
Q Consensus 122 ~g~~~~A~~~f~~m 135 (643)
.|+.+-+..+++..
T Consensus 89 ~~~~~~~~~Ll~~~ 102 (241)
T 1k1a_A 89 HRSPTCLRALLDSA 102 (241)
T ss_dssp TTCHHHHHHHHHHS
T ss_pred cCCHHHHHHHHHcC
Confidence 55555555555543
No 308
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=27.51 E-value=1.8e+02 Score=28.08 Aligned_cols=25 Identities=8% Similarity=0.146 Sum_probs=18.8
Q ss_pred HHHHHHHHHhCCCcchHHHHHHHHH
Q 045672 42 LLDDFTRFCYQRDLPRAMKAMHAMQ 66 (643)
Q Consensus 42 ~~~li~~~~~~g~~~~A~~~~~~m~ 66 (643)
..++|.-|...++.++|...++++.
T Consensus 57 ~~~ii~EYf~~~d~~Ea~~~l~eL~ 81 (358)
T 3eiq_C 57 LTPIIQEYFEHGDTNEVAEMLRDLN 81 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhC
Confidence 5667778888888888888777654
No 309
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=27.14 E-value=2.6e+02 Score=24.27 Aligned_cols=49 Identities=16% Similarity=0.164 Sum_probs=33.9
Q ss_pred hHHHHHHHHHh---CCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhH
Q 045672 142 SWTTMISAYCD---AKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL 191 (643)
Q Consensus 142 ~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 191 (643)
..--+|+++.+ ..+++.|+-.+-+|++.| .|.-..-..++-+....|..
T Consensus 13 ~HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlA 64 (204)
T 2r9g_A 13 AHYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLG 64 (204)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGG
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCC
Confidence 33446666654 589999999999999999 76655555555555444443
No 310
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=26.35 E-value=85 Score=23.62 Aligned_cols=38 Identities=16% Similarity=0.141 Sum_probs=30.3
Q ss_pred CCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHH
Q 045672 320 GSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEAL 357 (643)
Q Consensus 320 g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~ 357 (643)
...+.|.++++.++.++...|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 46788888888888888888888888887777765544
No 311
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=24.85 E-value=74 Score=28.73 Aligned_cols=92 Identities=10% Similarity=0.065 Sum_probs=49.1
Q ss_pred HHHHHhCCCcchHHHHHHHHHhCCCCCCHhh-------HHHHHHHHH--ccCCHHHHHHHHHHHHHcC---------CCC
Q 045672 46 FTRFCYQRDLPRAMKAMHAMQCHGVRADSVT-------YAELIKCCL--ARHAVEEAKLVHNHVLSGG---------FEP 107 (643)
Q Consensus 46 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-------~~~ll~~~~--~~~~~~~a~~~~~~~~~~g---------~~~ 107 (643)
+...++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-++.+++.-...+ +..
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~ 88 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRD 88 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccc
Confidence 3445667888888888887776665555332 233433332 5677777766666543311 000
Q ss_pred chhHHHHHHHHHHcCCChhHHHHHHccCCC
Q 045672 108 ETFLVNILLNMHVKFSLLEEAQVLFDQMPE 137 (643)
Q Consensus 108 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~ 137 (643)
......+.+...+..|+.+-+..+++.-..
T Consensus 89 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~ 118 (260)
T 3jxi_A 89 VYYRGQTALHIAIERRCKHYVELLVEKGAD 118 (260)
T ss_dssp SSEESBCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred cccCCCCHHHHHHHcCCHHHHHHHHhCCCC
Confidence 000111233344556777777767665433
No 312
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=24.51 E-value=1.8e+02 Score=29.68 Aligned_cols=63 Identities=11% Similarity=-0.000 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh--HHH-HHHHHHHHhcCCHHHHHHHHHhC
Q 045672 372 YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGR--EHY-SCMIDLLGRAGKLQEAVKLIHEM 434 (643)
Q Consensus 372 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~-~~li~~~~~~g~~~~A~~~~~~m 434 (643)
...++.++..|.+.+.+++|..+..+..--....++. ..| -.+...+.-.+++.+|.+.+...
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 5567778888888888888888887663100001111 122 23345566778888888777664
No 313
>2hgo_A CASSIICOLIN; toxin, disulfide bridge, glycoprotein; HET: PCA 3HD; NMR {Corynespora cassiicola}
Probab=23.92 E-value=17 Score=19.00 Aligned_cols=13 Identities=46% Similarity=1.482 Sum_probs=8.9
Q ss_pred ccCCccc--CCCCCC
Q 045672 631 HFQDGNC--SCGDYW 643 (643)
Q Consensus 631 ~~~~g~~--s~~~~w 643 (643)
.|.+|.| .|++-|
T Consensus 8 ~fgngfcgdncgnsw 22 (27)
T 2hgo_A 8 NFGNGFCGDNCGNSW 22 (27)
T ss_dssp EETTTEEECSSSCEE
T ss_pred eecCccccCCcCCcc
Confidence 5777777 566655
No 314
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=23.78 E-value=4.6e+02 Score=24.59 Aligned_cols=69 Identities=12% Similarity=0.093 Sum_probs=38.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC--HHHHHHHHHHhHHhcCCCCChHH
Q 045672 340 WSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGF--VEDGWNHFKSMKKFYGIDPGREH 410 (643)
Q Consensus 340 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~--~~~a~~~~~~~~~~~~~~p~~~~ 410 (643)
.+.++.-|...|+.++|...++++....+.+ ......+..+.-+.++ .+....++..+.+. ++-+....
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~-e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~-~~ls~~q~ 239 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIIMVLESTGESTFKMILDLLKSLWKS-STITVDQM 239 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGHH-HHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHH-CSSCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcchH-HHHHHHHHHHHccCChHHHHHHHHHHHHHHHC-CCCCHHHH
Confidence 4567777777888888888888775211111 2334445555554432 34556677777654 54444333
No 315
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=23.29 E-value=89 Score=23.51 Aligned_cols=38 Identities=13% Similarity=0.039 Sum_probs=31.7
Q ss_pred CCHHHHHHHHhhCCCCCcchHHHHHHHHHhCCChhHHH
Q 045672 221 GELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEAL 258 (643)
Q Consensus 221 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~ 258 (643)
.+.+.|.++++.++.++..+|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 46889999999999999999999999998777766553
No 316
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=22.76 E-value=1.3e+02 Score=28.98 Aligned_cols=26 Identities=8% Similarity=0.184 Sum_probs=16.7
Q ss_pred HHHHHHHHcCCChhHHHHHHccCCCC
Q 045672 113 NILLNMHVKFSLLEEAQVLFDQMPER 138 (643)
Q Consensus 113 ~~li~~~~~~g~~~~A~~~f~~m~~~ 138 (643)
..++.-|...|+.++|...++++..|
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p 40 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASP 40 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCG
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCc
Confidence 44566666666777777777766654
No 317
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=22.50 E-value=1.6e+02 Score=26.43 Aligned_cols=53 Identities=9% Similarity=-0.030 Sum_probs=31.9
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCchhH-------HHHHHHHHH--cCCChhHHHHHHcc
Q 045672 82 KCCLARHAVEEAKLVHNHVLSGGFEPETFL-------VNILLNMHV--KFSLLEEAQVLFDQ 134 (643)
Q Consensus 82 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-------~~~li~~~~--~~g~~~~A~~~f~~ 134 (643)
...++.|+.+..+.+++.+.+.|...+... .+.|..+.. +.|..+-+..+++.
T Consensus 10 ~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~ 71 (260)
T 3jxi_A 10 FDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDI 71 (260)
T ss_dssp HHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHh
Confidence 344466888888888888887776555332 223333221 56777766666654
No 318
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=22.49 E-value=2.7e+02 Score=23.21 Aligned_cols=60 Identities=5% Similarity=0.085 Sum_probs=43.7
Q ss_pred HHHHHHHHHhCCCcchHHHHHHHHHhCCCCC--CHhhHHHHHH-HH-----HccCCHHHHHHHHHHHHH
Q 045672 42 LLDDFTRFCYQRDLPRAMKAMHAMQCHGVRA--DSVTYAELIK-CC-----LARHAVEEAKLVHNHVLS 102 (643)
Q Consensus 42 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~ll~-~~-----~~~~~~~~a~~~~~~~~~ 102 (643)
|..-+..|- .|+|-+|-++|+..-...-.+ ....|..||+ .. .+.|+...|..++...+.
T Consensus 36 ~~~~i~lFn-~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 36 VVHGVRLYN-SGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-CCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 544554444 499999999999998765455 5566777777 32 357889999988888766
No 319
>2k0q_A Putative uncharacterized protein COPK; copper, heavy metal resistance, open barrel, plasmid- encoded, metal binding protein; NMR {Cupriavidus metallidurans} PDB: 2km0_A 2lel_A 3dso_A 3dsp_A 3n7d_A 3n7e_A
Probab=22.41 E-value=32 Score=23.87 Aligned_cols=21 Identities=29% Similarity=0.490 Sum_probs=17.4
Q ss_pred eeEEEeCCCcccccCCcccCC
Q 045672 619 QTIVIRDPIRYHHFQDGNCSC 639 (643)
Q Consensus 619 ~~~~~~~~~~~h~~~~g~~s~ 639 (643)
..|-+.|.+..|+|+||+-+-
T Consensus 8 k~v~LkDGstvyiFKDGKMam 28 (74)
T 2k0q_A 8 KTYDLQDGSKVHVFKDGKMGM 28 (74)
T ss_dssp EEEEBTTSCEEEEETTSCEEE
T ss_pred eeEecCCCcEEEEEcCCceeh
Confidence 456788999999999998654
No 320
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=21.71 E-value=2.8e+02 Score=26.79 Aligned_cols=26 Identities=12% Similarity=-0.010 Sum_probs=15.2
Q ss_pred HHHHHHHHcCCChhHHHHHHccCCCC
Q 045672 113 NILLNMHVKFSLLEEAQVLFDQMPER 138 (643)
Q Consensus 113 ~~li~~~~~~g~~~~A~~~f~~m~~~ 138 (643)
..++.=|...|++++|...++++..|
T Consensus 16 ~~ii~EY~~~~D~~Ea~~~l~eL~~p 41 (364)
T 3l6a_A 16 ETVVTEYLNSGNANEAVNGVREMRAP 41 (364)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCc
Confidence 44555555566666666666665554
No 321
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=21.61 E-value=2.3e+02 Score=24.50 Aligned_cols=84 Identities=13% Similarity=0.088 Sum_probs=37.7
Q ss_pred HHHHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchh--HHHHHHHHHHcCC
Q 045672 46 FTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETF--LVNILLNMHVKFS 123 (643)
Q Consensus 46 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g 123 (643)
+...++.|+.+....++..-...-..+|..-.+. +...+..|+.+-.+ .+++.|..++.. ...+.+...+..|
T Consensus 10 l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~-L~~A~~~g~~~~v~----~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 84 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILADKSLATRTDQDSRTA-LHWACSAGHTEIVE----FLLQLGVPVNDKDDAGWSPLHIAASAG 84 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCH-HHHHHHHTCHHHHH----HHHHTTCCSCCCCTTSCCHHHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCH-HHHHHHcCcHHHHH----HHHHhCCCCCCcCCCCCCHHHHHHHcC
Confidence 4455667777777776665322111222222222 33334456654443 444445443321 1112223334455
Q ss_pred ChhHHHHHHcc
Q 045672 124 LLEEAQVLFDQ 134 (643)
Q Consensus 124 ~~~~A~~~f~~ 134 (643)
+.+-+..+++.
T Consensus 85 ~~~~v~~Ll~~ 95 (231)
T 3aji_A 85 XDEIVKALLVK 95 (231)
T ss_dssp CHHHHHHHHHT
T ss_pred HHHHHHHHHHc
Confidence 66555555554
No 322
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=21.53 E-value=23 Score=21.73 Aligned_cols=10 Identities=30% Similarity=0.996 Sum_probs=8.6
Q ss_pred ccccccchhh
Q 045672 599 NLRICGDCHT 608 (643)
Q Consensus 599 ~l~~c~~~~~ 608 (643)
+.|+|.+|+.
T Consensus 16 ~YRvC~~Cgk 25 (44)
T 2lo3_A 16 QYRVCEKCGK 25 (44)
T ss_dssp CEEECTTTCC
T ss_pred cchhhcccCC
Confidence 6899999985
No 323
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=21.23 E-value=5e+02 Score=24.45 Aligned_cols=124 Identities=13% Similarity=0.143 Sum_probs=70.1
Q ss_pred CcchHHHHHHHHHhC-C----CCCCHhhHHH---HHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCCh
Q 045672 54 DLPRAMKAMHAMQCH-G----VRADSVTYAE---LIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLL 125 (643)
Q Consensus 54 ~~~~A~~~~~~m~~~-g----~~p~~~~~~~---ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 125 (643)
+-++|.-+|..+... + ..|+...... .+..+.+..+ -+++..+.+.|+.|..++..=++..+++.=.+
T Consensus 164 ~E~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~----p~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~ 239 (331)
T 3qye_A 164 SEEEAFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYH----RDLYNHLEEHEIGPSLYAAPWFLTMFASQFPL 239 (331)
T ss_dssp CHHHHHHHHHHHHTTTCGGGGGSTTCHHHHHHHHHHHHHHHHHC----HHHHHHHHHTTCCGGGTSHHHHHSTTTTTSCH
T ss_pred hHHHHHHHHHHHHHhcCchhcCCCChHHHHHHHHHHHHHHHHHH----HHHHHHHHHcCCChHHHHHHHHHHHhhhhCCH
Confidence 456788888877643 2 2333222211 2222222222 35777888889988888888888888888788
Q ss_pred hHHHHHHccCCC--CCcchHHH--HHH----HHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 045672 126 EEAQVLFDQMPE--RNVVSWTT--MIS----AYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184 (643)
Q Consensus 126 ~~A~~~f~~m~~--~~~~~~~~--li~----~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 184 (643)
+.+.+++|.+.. +....+-+ ++. ...+..+.++.+..++.... ..+......+++-
T Consensus 240 ~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~~~p---~~~~~di~~li~~ 303 (331)
T 3qye_A 240 GFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKSTLP---NLGLVQMEKTINQ 303 (331)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHHTTT---CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCC---CCCHHHHHHHHHH
Confidence 899999887653 22222221 111 12233467777777766321 1233444555543
No 324
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=21.03 E-value=1.9e+02 Score=26.15 Aligned_cols=100 Identities=10% Similarity=0.010 Sum_probs=54.4
Q ss_pred CCCcchHHHHHHHHHhCCCcchHHHHHHHHHhCCCCC-------CHhhHHHHHHHHH--ccCCHHHHHHHHHHHHHcC--
Q 045672 36 TRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRA-------DSVTYAELIKCCL--ARHAVEEAKLVHNHVLSGG-- 104 (643)
Q Consensus 36 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-------~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~g-- 104 (643)
.+|..-++.+.. .++.|+.+.+..+++.....+... |..-.+.|..++. +.|+.+-++.+++.-...+
T Consensus 8 ~~d~~g~t~L~~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~ 86 (273)
T 2pnn_A 8 PPRLYDRRSIFD-AVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSL 86 (273)
T ss_dssp ---CCCHHHHHH-HHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCH
T ss_pred CCCcccchHHHH-HHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccch
Confidence 344444555554 467799998888888776655332 3333445555553 3577777777776543211
Q ss_pred -------CC-CchhHHHHHHHHHHcCCChhHHHHHHccCCC
Q 045672 105 -------FE-PETFLVNILLNMHVKFSLLEEAQVLFDQMPE 137 (643)
Q Consensus 105 -------~~-~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~ 137 (643)
.. .|..-. +.+...+..|+.+-+..+++.-..
T Consensus 87 ~~~i~~~~~~~d~~g~-tpL~~A~~~g~~~~v~~Ll~~ga~ 126 (273)
T 2pnn_A 87 KQFVNASYTDSYYKGQ-TALHIAIERRNMTLVTLLVENGAD 126 (273)
T ss_dssp HHHHTCCCCSTTTTTC-CHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred hHHhhcccccccCCCC-CHHHHHHHcCCHHHHHHHHHCCCC
Confidence 11 111122 223334566777777777765443
No 325
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=20.79 E-value=42 Score=24.81 Aligned_cols=29 Identities=17% Similarity=0.281 Sum_probs=24.2
Q ss_pred cchHHHHHHHHHHHHHHHhCCcccCCccc
Q 045672 531 PQIDKINKHLKHLIQKLVGVGYAPDTNYV 559 (643)
Q Consensus 531 ~~~~~~~~~l~~l~~~~~~~g~~~d~~~~ 559 (643)
++..++...+++...+++..|+.||...+
T Consensus 13 gdlirIl~~ieekinELk~dG~ePDIiL~ 41 (103)
T 2pk8_A 13 GDLIRILGEIEEKMNELKMDGFNPDIILF 41 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCEEEE
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCCCeEEE
Confidence 45677888888889999999999998754
No 326
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=20.66 E-value=2e+02 Score=21.12 Aligned_cols=66 Identities=18% Similarity=0.215 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHcCCChhHHHHHHccCCCCCcchHHHHHHHHHhCCChhHHHHH
Q 045672 93 AKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALEL 162 (643)
Q Consensus 93 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~ 162 (643)
...++..+...|+ .+..-+..+-.. ....+.|.++++.++.++..+|..++.++.+.+...-|..+
T Consensus 24 v~~lld~L~~~~v-lt~~~~e~I~~~---~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~La~~L 89 (94)
T 2p1h_A 24 TSYIMDHMISDGF-LTISEEEKVRNE---PTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLAALL 89 (94)
T ss_dssp HHHHHHHHHHHTS-SCHHHHHHHHTS---SSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCCC-CCHHHHHHHHcC---CChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHHHHHH
No 327
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=20.59 E-value=2.5e+02 Score=23.59 Aligned_cols=59 Identities=8% Similarity=-0.023 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHcCCCCch-hHHHHHHHHHHcCCChhHHHHHHccCCCCCcchHHHHHHHH
Q 045672 92 EAKLVHNHVLSGGFEPET-FLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAY 150 (643)
Q Consensus 92 ~a~~~~~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~ 150 (643)
.+..+|..|...|+.... ..|-.-...+-..|++.+|.++|+.-.+.++.....|-..+
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L~~~~ 137 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLERLQSQH 137 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 366778888887765443 45666667777788888888888766665555555555443
No 328
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=20.36 E-value=1.7e+02 Score=23.81 Aligned_cols=69 Identities=10% Similarity=0.082 Sum_probs=0.0
Q ss_pred hcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 045672 318 KCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAG 386 (643)
Q Consensus 318 ~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 386 (643)
+...++.+.+.+.+..-+-...-..++..+...+..-.|.++++.+.+.+...+..|....|..+...|
T Consensus 2 ~~~~~~~~~~~l~~~g~r~T~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 2 AAHELKEALETLKETGVRITPQRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp --CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred chhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
No 329
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=20.25 E-value=3.6e+02 Score=23.87 Aligned_cols=93 Identities=15% Similarity=0.223 Sum_probs=0.0
Q ss_pred HHHHHHHHhhCCC-CCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhh
Q 045672 223 LRNAECVFNEMPT-RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK 301 (643)
Q Consensus 223 ~~~A~~~f~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~ 301 (643)
++.+.+.|..... +|-.-|-.+=--|+. ..+++.++|..|...|+--....|
T Consensus 100 LErc~~~F~~~~rYknD~RyLklWl~Ya~--~~~~p~~if~~L~~~~IG~~~Alf------------------------- 152 (223)
T 4aez_C 100 LERCTREFVRNPLYKDDVRYLRIWMQYVN--YIDEPVELFSFLAHHHIGQESSIF------------------------- 152 (223)
T ss_dssp HHHHHHHTTTCGGGTTCHHHHHHHHHHHT--TCSCHHHHHHHHHHTTCSTTBHHH-------------------------
T ss_pred HHHHHHHhcccccccCCHHHHHHHHHHHH--ccCCHHHHHHHHHHCCcchhHHHH-------------------------
Q ss_pred cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHh
Q 045672 302 YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQ 349 (643)
Q Consensus 302 ~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~ 349 (643)
|......+...|++.+|.++|+.-.+........|...|..
T Consensus 153 -------Ye~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~~~~~~ 193 (223)
T 4aez_C 153 -------YEEYANYFESRGLFQKADEVYQKGKRMKAKPFLRFQQKYQQ 193 (223)
T ss_dssp -------HHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHHHHHHHHHH
T ss_pred -------HHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHHHH
Done!