BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045673
(132 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 65/145 (44%), Gaps = 33/145 (22%)
Query: 5 VLQSWDPTLVNPC--TWFHVTCNSENSVIRV---DL------------------------ 35
L SW PT + C TW V C+++ RV DL
Sbjct: 23 TLSSWLPT-TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFL 81
Query: 36 ---GNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAI 92
G L GP+ P + LT L YL + N+SG+IP + +K L++L N LSG +
Sbjct: 82 YIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTL 141
Query: 93 PASIGNLRSLKFMRLNNNNLTGRIP 117
P SI +L +L + + N ++G IP
Sbjct: 142 PPSISSLPNLVGITFDGNRISGAIP 166
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 49/87 (56%), Gaps = 2/87 (2%)
Query: 29 SVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLI-SLGLFNNQ 87
+++ +D LSG L P + L NL ++ N ISG+IP G+ KL S+ + N+
Sbjct: 126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR 185
Query: 88 LSGAIPASIGNLRSLKFMRLNNNNLTG 114
L+G IP + NL +L F+ L+ N L G
Sbjct: 186 LTGKIPPTFANL-NLAFVDLSRNMLEG 211
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 33 VDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAI 92
VDL L G G N Q + + KN+++ + ++G K L L L NN++ G +
Sbjct: 202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTL 260
Query: 93 PASIGNLRSLKFMRLNNNNLTGRIPR 118
P + L+ L + ++ NNL G IP+
Sbjct: 261 PQGLTQLKFLHSLNVSFNNLCGEIPQ 286
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 58/97 (59%), Gaps = 2/97 (2%)
Query: 29 SVIRVDLGNAGLSGPLVPQLGL--LTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNN 86
S++ +DL + SGP++P L LQ L + N +G IP + N +L+SL L N
Sbjct: 369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN 428
Query: 87 QLSGAIPASIGNLRSLKFMRLNNNNLTGRIPREVIQL 123
LSG IP+S+G+L L+ ++L N L G IP+E++ +
Sbjct: 429 YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV 465
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 60/96 (62%)
Query: 23 TCNSENSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLG 82
T ++ S++ +D+ LSG + ++G + L L++ N+ISGSIP E+G+L+ L L
Sbjct: 627 TFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILD 686
Query: 83 LFNNQLSGAIPASIGNLRSLKFMRLNNNNLTGRIPR 118
L +N+L G IP ++ L L + L+NNNL+G IP
Sbjct: 687 LSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 47/73 (64%)
Query: 53 NLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRLNNNNL 112
++ +L + N +SG IP EIG++ L L L +N +SG+IP +G+LR L + L++N L
Sbjct: 633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 692
Query: 113 TGRIPREVIQLII 125
GRIP+ + L +
Sbjct: 693 DGRIPQAMSALTM 705
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 48/83 (57%)
Query: 40 LSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNL 99
L+G + L TNL ++S+ N ++G IP IG L+ L L L NN SG IPA +G+
Sbjct: 478 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC 537
Query: 100 RSLKFMRLNNNNLTGRIPREVIQ 122
RSL ++ LN N G IP + +
Sbjct: 538 RSLIWLDLNTNLFNGTIPAAMFK 560
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 56/93 (60%)
Query: 25 NSENSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLF 84
N +N++ + L N G +G + P L + L L + N +SG+IPS +G+L KL L L+
Sbjct: 391 NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLW 450
Query: 85 NNQLSGAIPASIGNLRSLKFMRLNNNNLTGRIP 117
N L G IP + +++L+ + L+ N+LTG IP
Sbjct: 451 LNMLEGEIPQELMYVKTLETLILDFNDLTGEIP 483
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 52/84 (61%)
Query: 40 LSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNL 99
LSG + LG L+ L+ L ++ N + G IP E+ +K L +L L N L+G IP+ + N
Sbjct: 430 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 489
Query: 100 RSLKFMRLNNNNLTGRIPREVIQL 123
+L ++ L+NN LTG IP+ + +L
Sbjct: 490 TNLNWISLSNNRLTGEIPKWIGRL 513
Score = 52.8 bits (125), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 49/81 (60%)
Query: 40 LSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNL 99
L G + +L + L+ L + N+++G IPS + N L + L NN+L+G IP IG L
Sbjct: 454 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 513
Query: 100 RSLKFMRLNNNNLTGRIPREV 120
+L ++L+NN+ +G IP E+
Sbjct: 514 ENLAILKLSNNSFSGNIPAEL 534
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 39/64 (60%)
Query: 33 VDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAI 92
+ L N L+G + +G L NL L + N+ SG+IP+E+G+ + LI L L N +G I
Sbjct: 495 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 554
Query: 93 PASI 96
PA++
Sbjct: 555 PAAM 558
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 45 VPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKF 104
+P LG + LQ+L + N +SG I +L L + +NQ G IP L+SL++
Sbjct: 216 IPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQY 273
Query: 105 MRLNNNNLTGRIP 117
+ L N TG IP
Sbjct: 274 LSLAENKFTGEIP 286
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 42 GPLVPQLGLLTNLQYLSVYKNNISGSIPSEI-GNLKKLISLGLFNNQLSGAIPASIGNLR 100
GP+ P L +LQYLS+ +N +G IP + G L L L N GA+P G+
Sbjct: 261 GPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 318
Query: 101 SLKFMRLNNNNLTGRIPREVI 121
L+ + L++NN +G +P + +
Sbjct: 319 LLESLALSSNNFSGELPMDTL 339
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 53 NLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRLNNNNL 112
NL++L V NN S IP +G+ L L + N+LSG +I LK + +++N
Sbjct: 201 NLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF 259
Query: 113 TGRIP 117
G IP
Sbjct: 260 VGPIP 264
Score = 34.3 bits (77), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
Query: 28 NSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSE-IGNLKKLISLGLFNN 86
+++ +DL G + P G + L+ L++ NN SG +P + + ++ L L L N
Sbjct: 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 353
Query: 87 QLSGAIPASIGNLR-SLKFMRLNNNNLTGRI 116
+ SG +P S+ NL SL + L++NN +G I
Sbjct: 354 EFSGELPESLTNLSASLLTLDLSSNNFSGPI 384
Score = 32.0 bits (71), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 59/115 (51%), Gaps = 10/115 (8%)
Query: 4 NVLQSWDPTLVNPCTWFHVTCNSENSVIRVDLG----NAGLSGPLVPQLGLLTNLQYLSV 59
N+L W NPCT+ VTC ++ V +DL N G S + L LT L+ L +
Sbjct: 28 NLLPDWSSN-KNPCTFDGVTCR-DDKVTSIDLSSKPLNVGFSA-VSSSLLSLTGLESLFL 84
Query: 60 YKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIP--ASIGNLRSLKFMRLNNNNL 112
++I+GS+ S L SL L N LSG + S+G+ LKF+ +++N L
Sbjct: 85 SNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL 138
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 57/95 (60%), Gaps = 2/95 (2%)
Query: 29 SVIRVDLGNAGLSGPLVPQLGL--LTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNN 86
S++ +DL + SGP++P L LQ L + N +G IP + N +L+SL L N
Sbjct: 366 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN 425
Query: 87 QLSGAIPASIGNLRSLKFMRLNNNNLTGRIPREVI 121
LSG IP+S+G+L L+ ++L N L G IP+E++
Sbjct: 426 YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM 460
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 60/96 (62%)
Query: 23 TCNSENSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLG 82
T ++ S++ +D+ LSG + ++G + L L++ N+ISGSIP E+G+L+ L L
Sbjct: 624 TFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILD 683
Query: 83 LFNNQLSGAIPASIGNLRSLKFMRLNNNNLTGRIPR 118
L +N+L G IP ++ L L + L+NNNL+G IP
Sbjct: 684 LSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 719
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 47/73 (64%)
Query: 53 NLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRLNNNNL 112
++ +L + N +SG IP EIG++ L L L +N +SG+IP +G+LR L + L++N L
Sbjct: 630 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 689
Query: 113 TGRIPREVIQLII 125
GRIP+ + L +
Sbjct: 690 DGRIPQAMSALTM 702
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 48/83 (57%)
Query: 40 LSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNL 99
L+G + L TNL ++S+ N ++G IP IG L+ L L L NN SG IPA +G+
Sbjct: 475 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC 534
Query: 100 RSLKFMRLNNNNLTGRIPREVIQ 122
RSL ++ LN N G IP + +
Sbjct: 535 RSLIWLDLNTNLFNGTIPAAMFK 557
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 60/107 (56%), Gaps = 6/107 (5%)
Query: 11 PTLVNPCTWFHVTCNSENSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPS 70
P L N C N +N++ + L N G +G + P L + L L + N +SG+IPS
Sbjct: 380 PILPNLCQ------NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS 433
Query: 71 EIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRLNNNNLTGRIP 117
+G+L KL L L+ N L G IP + +++L+ + L+ N+LTG IP
Sbjct: 434 SLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIP 480
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 52/84 (61%)
Query: 40 LSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNL 99
LSG + LG L+ L+ L ++ N + G IP E+ +K L +L L N L+G IP+ + N
Sbjct: 427 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 486
Query: 100 RSLKFMRLNNNNLTGRIPREVIQL 123
+L ++ L+NN LTG IP+ + +L
Sbjct: 487 TNLNWISLSNNRLTGEIPKWIGRL 510
Score = 52.8 bits (125), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 49/81 (60%)
Query: 40 LSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNL 99
L G + +L + L+ L + N+++G IPS + N L + L NN+L+G IP IG L
Sbjct: 451 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 510
Query: 100 RSLKFMRLNNNNLTGRIPREV 120
+L ++L+NN+ +G IP E+
Sbjct: 511 ENLAILKLSNNSFSGNIPAEL 531
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 39/64 (60%)
Query: 33 VDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAI 92
+ L N L+G + +G L NL L + N+ SG+IP+E+G+ + LI L L N +G I
Sbjct: 492 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 551
Query: 93 PASI 96
PA++
Sbjct: 552 PAAM 555
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 45 VPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKF 104
+P LG + LQ+L + N +SG I +L L + +NQ G IP L+SL++
Sbjct: 213 IPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQY 270
Query: 105 MRLNNNNLTGRIP 117
+ L N TG IP
Sbjct: 271 LSLAENKFTGEIP 283
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 42 GPLVPQLGLLTNLQYLSVYKNNISGSIPSEI-GNLKKLISLGLFNNQLSGAIPASIGNLR 100
GP+ P L +LQYLS+ +N +G IP + G L L L N GA+P G+
Sbjct: 258 GPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 315
Query: 101 SLKFMRLNNNNLTGRIPREVI 121
L+ + L++NN +G +P + +
Sbjct: 316 LLESLALSSNNFSGELPMDTL 336
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 53 NLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRLNNNNL 112
NL++L V NN S IP +G+ L L + N+LSG +I LK + +++N
Sbjct: 198 NLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF 256
Query: 113 TGRIP 117
G IP
Sbjct: 257 VGPIP 261
Score = 33.9 bits (76), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
Query: 28 NSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSE-IGNLKKLISLGLFNN 86
+++ +DL G + P G + L+ L++ NN SG +P + + ++ L L L N
Sbjct: 291 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 350
Query: 87 QLSGAIPASIGNLR-SLKFMRLNNNNLTGRI 116
+ SG +P S+ NL SL + L++NN +G I
Sbjct: 351 EFSGELPESLTNLSASLLTLDLSSNNFSGPI 381
Score = 32.0 bits (71), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 59/115 (51%), Gaps = 10/115 (8%)
Query: 4 NVLQSWDPTLVNPCTWFHVTCNSENSVIRVDLG----NAGLSGPLVPQLGLLTNLQYLSV 59
N+L W NPCT+ VTC ++ V +DL N G S + L LT L+ L +
Sbjct: 25 NLLPDWSSN-KNPCTFDGVTCR-DDKVTSIDLSSKPLNVGFSA-VSSSLLSLTGLESLFL 81
Query: 60 YKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIP--ASIGNLRSLKFMRLNNNNL 112
++I+GS+ S L SL L N LSG + S+G+ LKF+ +++N L
Sbjct: 82 SNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL 135
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 37/60 (61%)
Query: 51 LTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRLNNN 110
L +L L +++N ++ P +L +L++L LF N LS ++ LR+L+++RLN+N
Sbjct: 176 LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 37/60 (61%)
Query: 51 LTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRLNNN 110
L +L L +++N ++ P +L +L++L LF N LS ++ LR+L+++RLN+N
Sbjct: 175 LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 234
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 43 PLVPQLGL--LTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASI-GNL 99
P VP+ L +L L +++N+++ P +L +L++L LF N LS +PA + L
Sbjct: 165 PSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLS-MLPAEVLVPL 223
Query: 100 RSLKFMRLNNN 110
RSL+++RLN+N
Sbjct: 224 RSLQYLRLNDN 234
Score = 25.8 bits (55), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 30/73 (41%)
Query: 51 LTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRLNNN 110
L LQYL + NN+ + +L L L L N++ + L SL + L+ N
Sbjct: 127 LAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQN 186
Query: 111 NLTGRIPREVIQL 123
++ P L
Sbjct: 187 HVARVHPHAFRDL 199
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 47/98 (47%), Gaps = 4/98 (4%)
Query: 22 VTCNSENSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISL 81
+ C S+ S + +G S VP G+ T Q L +Y N I+ P L +L L
Sbjct: 1 MACPSQCSCSGTTVDCSGKSLASVPT-GIPTTTQVLYLYDNRITKLEPGVFDRLTQLTRL 59
Query: 82 GLFNNQLSGAIPASI-GNLRSLKFMRLNNNNLTGRIPR 118
L NNQL+ +PA + L L + LN+N L IPR
Sbjct: 60 DLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQLKS-IPR 95
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 27/60 (45%)
Query: 51 LTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRLNNN 110
LT L L + N ++ L +L L L +NQL + NLRSL + L NN
Sbjct: 53 LTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLRSLTHIWLLNN 112
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 47/98 (47%), Gaps = 4/98 (4%)
Query: 22 VTCNSENSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISL 81
+ C S+ S + +G S VP G+ T Q L +Y N I+ P L +L L
Sbjct: 1 MACPSQCSCSGTTVDCSGKSLASVPT-GIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRL 59
Query: 82 GLFNNQLSGAIPASI-GNLRSLKFMRLNNNNLTGRIPR 118
L NNQL+ +PA + L L + LN+N L IPR
Sbjct: 60 DLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQLKS-IPR 95
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 24 CNSENSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGL 83
C S+ S + +G S VP G+ T Q L +Y N I+ P L +L L L
Sbjct: 11 CPSQCSCSGTTVDCSGKSLASVPT-GIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDL 69
Query: 84 FNNQLSGAIPASI-GNLRSLKFMRLNNNNLTGRIPR 118
NNQL+ +PA + L L + LN+N L IPR
Sbjct: 70 DNNQLT-VLPAGVFDKLTQLTQLSLNDNQLKS-IPR 103
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 51 LTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRLNNN 110
LT L YLS+ N + L L L L+NNQL + L LK ++L+NN
Sbjct: 132 LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNN 191
Query: 111 NLTGRIPR 118
L R+P
Sbjct: 192 QLK-RVPE 198
Score = 32.0 bits (71), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 51 LTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRLNNN 110
L NL L + +N + P +L KL L L N+L L SLK +RL NN
Sbjct: 108 LVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNN 167
Query: 111 NLTGRIPR 118
L R+P
Sbjct: 168 QLK-RVPE 174
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%)
Query: 51 LTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRLNNN 110
LT+L+ L +Y N + L +L +L L NNQL + +L LK ++L N
Sbjct: 156 LTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 35.0 bits (79), Expect = 0.012, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 38/62 (61%), Gaps = 2/62 (3%)
Query: 51 LTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRLNNN 110
L+NL+ L + N ++ S+P+E+G+ +L F+N ++ +P GNL +L+F+ + N
Sbjct: 269 LSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGN 326
Query: 111 NL 112
L
Sbjct: 327 PL 328
Score = 32.0 bits (71), Expect = 0.11, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 15/77 (19%)
Query: 51 LTNLQYLSVYKN--------------NISGSIPSEIGNLKKLISLGLFNNQLSGAIPASI 96
L+NLQ ++ N N +P+EI NL L L L +N+L+ ++PA +
Sbjct: 231 LSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLPAEL 289
Query: 97 GNLRSLKFMRLNNNNLT 113
G+ LK+ +N +T
Sbjct: 290 GSCFQLKYFYFFDNMVT 306
Score = 26.2 bits (56), Expect = 6.0, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 33 VDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQL 88
+DL + L+ L +LG L+Y + N ++ ++P E GNL L LG+ N L
Sbjct: 275 LDLSHNRLTS-LPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPL 328
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 4/67 (5%)
Query: 51 LTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRLNNN 110
L NL YL++Y NNIS P + +L KL L +NN++S +S+ NL ++ ++ +N
Sbjct: 304 LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHN 359
Query: 111 NLTGRIP 117
++ P
Sbjct: 360 QISDLTP 366
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
Query: 48 LGLLTNLQYLSVYKNNIS--GSIPSEIGNLKKLISLGLFNNQLSGAIPAS-IGNLRSLKF 104
LG+LTNL LS+ N + G++ S L L L L NNQ+S P S + L LK
Sbjct: 213 LGILTNLDELSLNGNQLKDIGTLAS----LTNLTDLDLANNQISNLAPLSGLTKLTELKL 268
Score = 25.8 bits (55), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 28 NSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQ 87
N++ +++ N L+ + L LT L + + N I+ P + NL L L LFNNQ
Sbjct: 63 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQ 118
Query: 88 LSGAIPASIGNLRSLKFMRLNNNNLT 113
++ P + NL +L + L++N ++
Sbjct: 119 ITDIDP--LKNLTNLNRLELSSNTIS 142
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 4/67 (5%)
Query: 51 LTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRLNNN 110
L NL YL++Y NNIS P + +L KL L +NN++S +S+ NL ++ ++ +N
Sbjct: 304 LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHN 359
Query: 111 NLTGRIP 117
++ P
Sbjct: 360 QISDLTP 366
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
Query: 48 LGLLTNLQYLSVYKNNIS--GSIPSEIGNLKKLISLGLFNNQLSGAIPAS-IGNLRSLKF 104
LG+LTNL LS+ N + G++ S L L L L NNQ+S P S + L LK
Sbjct: 213 LGILTNLDELSLNGNQLKDIGTLAS----LTNLTDLDLANNQISNLAPLSGLTKLTELKL 268
Score = 25.8 bits (55), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 28 NSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQ 87
N++ +++ N L+ + L LT L + + N I+ P + NL L L LFNNQ
Sbjct: 63 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQ 118
Query: 88 LSGAIPASIGNLRSLKFMRLNNNNLT 113
++ P + NL +L + L++N ++
Sbjct: 119 ITDIDP--LKNLTNLNRLELSSNTIS 142
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 4/67 (5%)
Query: 51 LTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRLNNN 110
L NL YL++Y NNIS P + +L KL L +NN++S +S+ NL ++ ++ +N
Sbjct: 303 LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHN 358
Query: 111 NLTGRIP 117
++ P
Sbjct: 359 QISDLTP 365
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
Query: 48 LGLLTNLQYLSVYKNNIS--GSIPSEIGNLKKLISLGLFNNQLSGAIPAS-IGNLRSLKF 104
LG+LTNL LS+ N + G++ S L L L L NNQ+S P S + L LK
Sbjct: 212 LGILTNLDELSLNGNQLKDIGTLAS----LTNLTDLDLANNQISNLAPLSGLTKLTELKL 267
Score = 25.4 bits (54), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 28 NSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQ 87
N++ +++ N L+ + L LT L + + N I+ P + NL L L LFNNQ
Sbjct: 63 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQ 118
Query: 88 LSGAIPASIGNLRSLKFMRLNNNNLT 113
++ P + NL +L + L++N ++
Sbjct: 119 ITDIDP--LKNLTNLNRLELSSNTIS 142
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 4/67 (5%)
Query: 51 LTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRLNNN 110
L NL YL++Y NNIS P + +L KL L +NN++S +S+ NL ++ ++ +N
Sbjct: 308 LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHN 363
Query: 111 NLTGRIP 117
++ P
Sbjct: 364 QISDLTP 370
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 8/72 (11%)
Query: 48 LGLLTNLQYLSVYKNNIS--GSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFM 105
LG+LTNL LS+ N + G++ S L L L L NNQ+S P S L L +
Sbjct: 217 LGILTNLDELSLNGNQLKDIGTLAS----LTNLTDLDLANNQISNLAPLS--GLTKLTEL 270
Query: 106 RLNNNNLTGRIP 117
+L N ++ P
Sbjct: 271 KLGANQISNISP 282
Score = 25.4 bits (54), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 28 NSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQ 87
N++ +++ N L+ + L LT L + + N I+ P + NL L L LFNNQ
Sbjct: 68 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQ 123
Query: 88 LSGAIPASIGNLRSLKFMRLNNNNLT 113
++ P + NL +L + L++N ++
Sbjct: 124 ITDIDP--LKNLTNLNRLELSSNTIS 147
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 34.3 bits (77), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 27/62 (43%)
Query: 51 LTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRLNNN 110
LTNL YL +Y N + L L L L NNQL L LK + LN+N
Sbjct: 132 LTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDN 191
Query: 111 NL 112
L
Sbjct: 192 QL 193
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 9/86 (10%)
Query: 45 VPQLGLLTNLQYLSVYKNNISGSIP----SEIGNLKKLISLGLFNNQLSGAIPASIGNLR 100
+ L LTNL YL + N + S+P ++ NLK+L+ L NQL L
Sbjct: 78 ISALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELV---LVENQLQSLPDGVFDKLT 133
Query: 101 SLKFMRLNNNNLTGRIPREVIQLIIN 126
+L ++ L +N L +P+ V + N
Sbjct: 134 NLTYLYLYHNQLQS-LPKGVFDKLTN 158
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%)
Query: 51 LTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRLNNN 110
LTNL+ L + +N + L L L L++NQL L +L + L+NN
Sbjct: 108 LTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNN 167
Query: 111 NL 112
L
Sbjct: 168 QL 169
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 32.3 bits (72), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 51 LTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRLNNN 110
L NL YL++Y NNIS P + +L KL L NN++S +S+ NL ++ ++ +N
Sbjct: 307 LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDV--SSLANLTNINWLSAGHN 362
Query: 111 NLTGRIP 117
++ P
Sbjct: 363 QISDLTP 369
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 8/72 (11%)
Query: 48 LGLLTNLQYLSVYKNNIS--GSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFM 105
LG+LTNL LS+ N + G++ S L L L L NNQ+S P S L L +
Sbjct: 216 LGILTNLDELSLNGNQLKDIGTLAS----LTNLTDLDLANNQISNLAPLS--GLTKLTEL 269
Query: 106 RLNNNNLTGRIP 117
+L N ++ P
Sbjct: 270 KLGANQISNISP 281
Score = 25.4 bits (54), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 51 LTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRLNNN 110
LT L + + N I+ P + NL L L LFNNQ++ P + NL +L + L++N
Sbjct: 88 LTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSN 143
Query: 111 NLT 113
++
Sbjct: 144 TIS 146
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 32.3 bits (72), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 48 LGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRL 107
L LTNLQYLS+ +S P + NL KL +L +N++S P + +L +L + L
Sbjct: 147 LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHL 202
Query: 108 NNNNLTGRIP 117
NN ++ P
Sbjct: 203 KNNQISDVSP 212
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 32.3 bits (72), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 51 LTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRLNNN 110
L NL YL++Y NNIS P + +L KL L NN++S +S+ NL ++ ++ +N
Sbjct: 304 LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNKVSDV--SSLANLTNINWLSAGHN 359
Query: 111 NLTGRIP 117
++ P
Sbjct: 360 QISDLTP 366
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
Query: 48 LGLLTNLQYLSVYKNNIS--GSIPSEIGNLKKLISLGLFNNQLSGAIPAS-IGNLRSLKF 104
LG+LTNL LS+ N + G++ S L L L L NNQ+S P S + L LK
Sbjct: 213 LGILTNLDELSLNGNQLKDIGTLAS----LTNLTDLDLANNQISNLAPLSGLTKLTELKL 268
Score = 25.8 bits (55), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 28 NSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQ 87
N++ +++ N L+ + L LT L + + N I+ P + NL L L LFNNQ
Sbjct: 63 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQ 118
Query: 88 LSGAIPASIGNLRSLKFMRLNNNNLT 113
++ P + NL +L + L++N ++
Sbjct: 119 ITDIDP--LKNLTNLNRLELSSNTIS 142
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 32.3 bits (72), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 51 LTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRLNNN 110
L NL YL++Y NNIS P + +L KL L NN++S +S+ NL ++ ++ +N
Sbjct: 303 LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNKVSDV--SSLANLTNINWLSAGHN 358
Query: 111 NLTGRIP 117
++ P
Sbjct: 359 QISDLTP 365
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
Query: 48 LGLLTNLQYLSVYKNNIS--GSIPSEIGNLKKLISLGLFNNQLSGAIPAS-IGNLRSLKF 104
LG+LTNL LS+ N + G++ S L L L L NNQ+S P S + L LK
Sbjct: 212 LGILTNLDELSLNGNQLKDIGTLAS----LTNLTDLDLANNQISNLAPLSGLTKLTELKL 267
Score = 25.4 bits (54), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 28 NSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQ 87
N++ +++ N L+ + L LT L + + N I+ P + NL L L LFNNQ
Sbjct: 63 NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQ 118
Query: 88 LSGAIPASIGNLRSLKFMRLNNNNLT 113
++ P + NL +L + L++N ++
Sbjct: 119 ITDIDP--LKNLTNLNRLELSSNTIS 142
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 51 LTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRLNNN 110
LTNLQYLS+ N ++ P + NL KL +L +N++S P + +L +L + L +N
Sbjct: 156 LTNLQYLSIGNNQVNDLTP--LANLSKLTTLRADDNKISDISP--LASLPNLIEVHLKDN 211
Query: 111 NLTGRIP 117
++ P
Sbjct: 212 QISDVSP 218
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 23 TCNSENSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLG 82
TC S++ ++L + L+G + L ++ L ++ N I SIP ++ +L+ L L
Sbjct: 423 TCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRI-MSIPKDVTHLQALQELN 479
Query: 83 LFNNQLSGAIPASIGNLRSLKFMRLNNN 110
+ +NQL L SL+++ L++N
Sbjct: 480 VASNQLKSVPDGVFDRLTSLQYIWLHDN 507
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 30.8 bits (68), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 13/125 (10%)
Query: 6 LQSWDPTLVNPCTWFHVTCNSENSVIRV-DLGNAGLSGPLVPQLGLLTNLQYLSVYKNNI 64
L S PT C + C+ V++ DLG + + P LL +LQ N+I
Sbjct: 16 LDSLPPTYSAMCPF---GCHCHLRVVQCSDLGLKAVPKEISPDTTLL-DLQ-----NNDI 66
Query: 65 SGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRLNNNNLTG---RIPREVI 121
S + L+ L +L L NN++S + LR L+ + ++ N+L +P ++
Sbjct: 67 SELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLV 126
Query: 122 QLIIN 126
+L I+
Sbjct: 127 ELRIH 131
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 35 LGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPA 94
+ A L+G +P+ L L L + N I ++ KL LGL +NQ+
Sbjct: 179 ISEAKLTG--IPK-DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENG 235
Query: 95 SIGNLRSLKFMRLNNNNLTGRIP 117
S+ L +L+ + L+NN L+ R+P
Sbjct: 236 SLSFLPTLRELHLDNNKLS-RVP 257
Score = 25.4 bits (54), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 75 LKKLISLGLFNNQLSGAIPASIGNLRSLKFMRLNNNNLT 113
L L L L NN+LS +PA + +L+ L+ + L+ NN+T
Sbjct: 240 LPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT 277
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 30.8 bits (68), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 6/101 (5%)
Query: 22 VTCNSENSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISL 81
C N++ VD GL+ +P L + + + +N I P KKL +
Sbjct: 7 AACTCSNNI--VDCRGKGLTE--IPT-NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRI 61
Query: 82 GLFNNQLSGAIPASIGNLRSLKFMRLNNNNLTGRIPREVIQ 122
L NNQ+S P + LRSL + L N +T +P+ + +
Sbjct: 62 DLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFE 101
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 30.8 bits (68), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 6/101 (5%)
Query: 22 VTCNSENSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISL 81
C N++ VD GL+ +P L + + + +N I P KKL +
Sbjct: 7 AACTCSNNI--VDCRGKGLTE--IPT-NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRI 61
Query: 82 GLFNNQLSGAIPASIGNLRSLKFMRLNNNNLTGRIPREVIQ 122
L NNQ+S P + LRSL + L N +T +P+ + +
Sbjct: 62 DLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFE 101
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 48 LGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRL 107
L LT+L Y + Y N I+ P + N +L SL + NN+++ P + NL L ++ +
Sbjct: 195 LASLTSLHYFTAYVNQITDITP--VANXTRLNSLKIGNNKITDLSP--LANLSQLTWLEI 250
Query: 108 NNNNLT 113
N ++
Sbjct: 251 GTNQIS 256
Score = 29.3 bits (64), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 45/80 (56%), Gaps = 4/80 (5%)
Query: 38 AGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIG 97
AG + + LTNL+YL++ N I+ P + NL KL +L + N+++ +++
Sbjct: 52 AGEKVASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQ 107
Query: 98 NLRSLKFMRLNNNNLTGRIP 117
NL +L+ + LN +N++ P
Sbjct: 108 NLTNLRELYLNEDNISDISP 127
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 30.0 bits (66), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
Query: 24 CNSENSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGL 83
C+ N +V GLS VPQ G+ +N +YL++ +NNI +L L L L
Sbjct: 50 CSCSNQFSKVVCTRRGLSE--VPQ-GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQL 106
Query: 84 FNNQLSGAIPASIGNLRSLKFMRLNNNNLT 113
N + + L SL + L +N LT
Sbjct: 107 GRNSIRQIEVGAFNGLASLNTLELFDNWLT 136
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 29.6 bits (65), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 53/118 (44%), Gaps = 18/118 (15%)
Query: 16 PCTWFHVTCNSENSVIRV----DLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSE 71
P F C+ +RV DLG + L P LL +LQ N I+ +
Sbjct: 23 PVCPFRCQCH-----LRVVQCSDLGLEKVPKDLPPDTALL-DLQ-----NNKITEIKDGD 71
Query: 72 IGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRLNNNNLT---GRIPREVIQLIIN 126
NLK L +L L NN++S P + L L+ + L+ N L ++P+ + +L ++
Sbjct: 72 FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVH 129
Score = 29.3 bits (64), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 45 VPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKF 104
+PQ GL +L L + N I+ + + L L LGL N +S S+ N L+
Sbjct: 186 IPQ-GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRE 244
Query: 105 MRLNNNNLTGRIP 117
+ LNNN L ++P
Sbjct: 245 LHLNNNKLV-KVP 256
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 11/87 (12%)
Query: 28 NSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQ 87
N + +VD A L G L NL L + N+IS + N L L L NN+
Sbjct: 202 NKITKVDA--ASLKG--------LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK 251
Query: 88 LSGAIPASIGNLRSLKFMRLNNNNLTG 114
L +P + + + ++ + L+NNN++
Sbjct: 252 LV-KVPGGLADHKYIQVVYLHNNNISA 277
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 29.6 bits (65), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 53/118 (44%), Gaps = 18/118 (15%)
Query: 16 PCTWFHVTCNSENSVIRV----DLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSE 71
P F C+ +RV DLG + L P LL +LQ N I+ +
Sbjct: 23 PVCPFRCQCH-----LRVVQCSDLGLEKVPKDLPPDTALL-DLQ-----NNKITEIKDGD 71
Query: 72 IGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRLNNNNLT---GRIPREVIQLIIN 126
NLK L +L L NN++S P + L L+ + L+ N L ++P+ + +L ++
Sbjct: 72 FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVH 129
Score = 29.3 bits (64), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 45 VPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKF 104
+PQ GL +L L + N I+ + + L L LGL N +S S+ N L+
Sbjct: 186 IPQ-GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRE 244
Query: 105 MRLNNNNLTGRIP 117
+ LNNN L ++P
Sbjct: 245 LHLNNNKLV-KVP 256
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 11/87 (12%)
Query: 28 NSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQ 87
N + +VD A L G L NL L + N+IS + N L L L NN+
Sbjct: 202 NKITKVDA--ASLKG--------LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK 251
Query: 88 LSGAIPASIGNLRSLKFMRLNNNNLTG 114
L +P + + + ++ + L+NNN++
Sbjct: 252 LV-KVPGGLADHKYIQVVYLHNNNISA 277
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 29.3 bits (64), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%)
Query: 30 VIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLS 89
+++++L L+G +++Q L + +N I L +L +L L++NQ+S
Sbjct: 56 LVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQIS 115
Query: 90 GAIPASIGNLRSLKFMRLNNN 110
+P S +L SL + L +N
Sbjct: 116 CVMPGSFEHLNSLTSLNLASN 136
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 29.3 bits (64), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 27/60 (45%)
Query: 51 LTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRLNNN 110
LT L YL++ N ++ L KL L L NQL NL+SL + L NN
Sbjct: 63 LTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKSIPMGVFDNLKSLTHIYLFNN 122
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 25/62 (40%)
Query: 51 LTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRLNNN 110
LTNL YL++ N + L L L L NQL L LK +RL N
Sbjct: 132 LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN 191
Query: 111 NL 112
L
Sbjct: 192 QL 193
Score = 27.3 bits (59), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 27/60 (45%)
Query: 51 LTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRLNNN 110
LTNL L + N + L +L L L+ NQL L SL+++ L++N
Sbjct: 156 LTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 9/86 (10%)
Query: 45 VPQLGLLTNLQYLSVYKNNISGSIP----SEIGNLKKLISLGLFNNQLSGAIPASIGNLR 100
+ L LTNL YL + N + S+P ++ NLK+L+ L NQL L
Sbjct: 78 ISALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELV---LVENQLQSLPDGVFDKLT 133
Query: 101 SLKFMRLNNNNLTGRIPREVIQLIIN 126
+L ++ L +N L +P+ V + N
Sbjct: 134 NLTYLNLAHNQLQS-LPKGVFDKLTN 158
>pdb|3A5V|A Chain A, Crystal Structure Of Alpha-Galactosidase I From
Mortierella Vinacea
Length = 397
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 63 NISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFM 105
N+ S E+ +L K SLG F+N ++ +PA +R LKFM
Sbjct: 351 NVDSSRSIEVRDLWKQKSLGNFSNHITLDVPAH--GVRLLKFM 391
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 32/69 (46%)
Query: 45 VPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKF 104
+P L L L L + N++S P L L L + +Q+ + NL+SL
Sbjct: 200 IPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVE 259
Query: 105 MRLNNNNLT 113
+ L +NNLT
Sbjct: 260 INLAHNNLT 268
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 27.7 bits (60), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 9/109 (8%)
Query: 24 CNSENSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGL 83
C ++V+R N GL ++P+ G+ ++ L + N + +P E+ N K L + L
Sbjct: 8 CTCLDTVVRC--SNKGLK--VLPK-GIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDL 61
Query: 84 FNNQLSGAIPASIGNLRSLKFMRLNNNNLTGRIPREVIQLIINGSLRIL 132
NN++S S N+ L + L+ N L PR L SLR+L
Sbjct: 62 SNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGL---KSLRLL 107
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 51 LTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRLN 108
L NLQ L + I S+P+ I NL+ L SL + N+ LS PA I +L L+ + L
Sbjct: 182 LVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPA-IHHLPKLEELDLR 237
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 37/81 (45%)
Query: 32 RVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGA 91
++DL + GL+ LT L +L++ N + +L +L +LGL NNQL+
Sbjct: 39 KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL 98
Query: 92 IPASIGNLRSLKFMRLNNNNL 112
+L L + L N L
Sbjct: 99 PLGVFDHLTQLDKLYLGGNQL 119
Score = 25.4 bits (54), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 51 LTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLS 89
LTNLQ LS+ N + L KL ++ LF NQ
Sbjct: 154 LTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 26.9 bits (58), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 35/89 (39%)
Query: 30 VIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLS 89
V DL + + L T+L+ L++ +N I+ + L L L L NQL
Sbjct: 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLKELALDTNQLK 336
Query: 90 GAIPASIGNLRSLKFMRLNNNNLTGRIPR 118
L SL+ + L+ N PR
Sbjct: 337 SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 365
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 26.9 bits (58), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 37/81 (45%)
Query: 32 RVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGA 91
++DL + GL+ LT L +L++ N + +L +L +LGL NNQL+
Sbjct: 39 KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL 98
Query: 92 IPASIGNLRSLKFMRLNNNNL 112
+L L + L N L
Sbjct: 99 PLGVFDHLTQLDKLYLGGNQL 119
Score = 25.4 bits (54), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 51 LTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLS 89
LTNLQ LS+ N + L KL ++ LF NQ
Sbjct: 154 LTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 51 LTNLQYLSVYKNNISGSIPSEI-GNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRLNN 109
LT+L YL++ N + S+P+ + L +L L L NQL L LK +RL
Sbjct: 75 LTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQ 133
Query: 110 NNL 112
N L
Sbjct: 134 NQL 136
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 54 LQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRLNNNNLT 113
++ L ++ N I SIP ++ L+ L L + +NQL L SL+ + L+ N
Sbjct: 423 IKVLDLHSNKI-KSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 481
Query: 114 GRIPR 118
PR
Sbjct: 482 CSCPR 486
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 26.6 bits (57), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 53 NLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRLNNNNL 112
NL+YL + N++ +L+ L L L+NN + + ++ L+ + L+ N +
Sbjct: 89 NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI 148
Query: 113 TGRIPREVIQ 122
+ R P E+I+
Sbjct: 149 S-RFPVELIK 157
>pdb|1XNS|A Chain A, Peptide Trapped Holliday Junction Intermediate In Cre-Loxp
Recombination
pdb|1XNS|B Chain B, Peptide Trapped Holliday Junction Intermediate In Cre-Loxp
Recombination
Length = 324
Score = 25.8 bits (55), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 34 DLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLG 82
D+ AG+S P + Q G TN+ + Y N+ SE G + +L+ G
Sbjct: 279 DMARAGVSIPEIMQAGGWTNVNIVMNYIRNLD----SETGAMVRLLEDG 323
>pdb|2HOF|A Chain A, Crystal Structure Of The Pre-Cleavage Synaptic Complex In
The Cre-Loxp Site-Specific Recombination
pdb|2HOF|B Chain B, Crystal Structure Of The Pre-Cleavage Synaptic Complex In
The Cre-Loxp Site-Specific Recombination
pdb|2HOI|A Chain A, Crystal Structure Of The Tetrameric Pre-Cleavage Synaptic
Complex In The Cre-Loxp Site-Specific Recombination
pdb|2HOI|B Chain B, Crystal Structure Of The Tetrameric Pre-Cleavage Synaptic
Complex In The Cre-Loxp Site-Specific Recombination
pdb|2HOI|G Chain G, Crystal Structure Of The Tetrameric Pre-Cleavage Synaptic
Complex In The Cre-Loxp Site-Specific Recombination
pdb|2HOI|H Chain H, Crystal Structure Of The Tetrameric Pre-Cleavage Synaptic
Complex In The Cre-Loxp Site-Specific Recombination
Length = 343
Score = 25.8 bits (55), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 34 DLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLG 82
D+ AG+S P + Q G TN+ + Y N+ SE G + +L+ G
Sbjct: 298 DMARAGVSIPEIMQAGGWTNVNIVMNYIRNLD----SETGAMVRLLEDG 342
>pdb|1Q3U|A Chain A, Crystal Structure Of A Wild-Type Cre Recombinase-Loxp
Synapse: Pre-Cleavage Complex
pdb|1Q3U|B Chain B, Crystal Structure Of A Wild-Type Cre Recombinase-Loxp
Synapse: Pre-Cleavage Complex
pdb|1Q3U|E Chain E, Crystal Structure Of A Wild-Type Cre Recombinase-Loxp
Synapse: Pre-Cleavage Complex
pdb|1Q3U|F Chain F, Crystal Structure Of A Wild-Type Cre Recombinase-Loxp
Synapse: Pre-Cleavage Complex
pdb|1Q3V|A Chain A, Crystal Structure Of A Wild-Type Cre Recombinase-Loxp
Synapse: Phosphotyrosine Covalent Intermediate
pdb|1Q3V|B Chain B, Crystal Structure Of A Wild-Type Cre Recombinase-Loxp
Synapse: Phosphotyrosine Covalent Intermediate
pdb|1Q3V|E Chain E, Crystal Structure Of A Wild-Type Cre Recombinase-Loxp
Synapse: Phosphotyrosine Covalent Intermediate
pdb|1Q3V|F Chain F, Crystal Structure Of A Wild-Type Cre Recombinase-Loxp
Synapse: Phosphotyrosine Covalent Intermediate
Length = 347
Score = 25.4 bits (54), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 34 DLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLG 82
D+ AG+S P + Q G TN+ + Y N+ SE G + +L+ G
Sbjct: 302 DMARAGVSIPEIMQAGGWTNVNIVMNYIRNLD----SETGAMVRLLEDG 346
>pdb|1F2V|A Chain A, Crystal Structure Analysis Of Precorrin-8x Methylmutase Of
Aerobic Vitamin B12 Synthesis
pdb|1I1H|A Chain A, Crystal Structure Analysis Of Precorrin-8x Methylmutase
Complex With Hydrogenobyrinic Acid
Length = 219
Score = 25.4 bits (54), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 67 SIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRLN 108
++ +EIGN + +L L++ +L+G++ A IGN + F L
Sbjct: 116 ALAAEIGNTRSAAALKLWSERLAGSVVA-IGNAPTALFFLLE 156
>pdb|1XO0|A Chain A, High Resolution Structure Of The Holliday Junction
Intermediate In Cre-Loxp Site-Specific Recombination
pdb|1XO0|B Chain B, High Resolution Structure Of The Holliday Junction
Intermediate In Cre-Loxp Site-Specific Recombination
Length = 324
Score = 25.4 bits (54), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 34 DLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLG 82
D+ AG+S P + Q G TN+ + Y N+ SE G + +L+ G
Sbjct: 279 DMARAGVSIPEIMQAGGWTNVNIVMNYIRNLD----SETGAMVRLLEDG 323
>pdb|1KBU|A Chain A, Cre Recombinase Bound To A Loxp Holliday Junction
pdb|1KBU|B Chain B, Cre Recombinase Bound To A Loxp Holliday Junction
pdb|1MA7|A Chain A, Crystal Structure Of Cre Site-Specific Recombinase
Complexed With A Mutant Dna Substrate, Loxp-A8T27
pdb|1MA7|B Chain B, Crystal Structure Of Cre Site-Specific Recombinase
Complexed With A Mutant Dna Substrate, Loxp-A8T27
Length = 349
Score = 25.4 bits (54), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 34 DLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLG 82
D+ AG+S P + Q G TN+ + Y N+ SE G + +L+ G
Sbjct: 304 DMARAGVSIPEIMQAGGWTNVNIVMNYIRNLD----SETGAMVRLLEDG 348
>pdb|2CRX|A Chain A, Structure Of The Holliday Junction Intermediate In
Cre-Loxp Site-Specific Recombination
pdb|2CRX|B Chain B, Structure Of The Holliday Junction Intermediate In
Cre-Loxp Site-Specific Recombination
pdb|1NZB|A Chain A, Crystal Structure Of Wild Type Cre Recombinase-Loxp
Synapse
pdb|1NZB|B Chain B, Crystal Structure Of Wild Type Cre Recombinase-Loxp
Synapse
pdb|1NZB|E Chain E, Crystal Structure Of Wild Type Cre Recombinase-Loxp
Synapse
pdb|1NZB|F Chain F, Crystal Structure Of Wild Type Cre Recombinase-Loxp
Synapse
pdb|1OUQ|A Chain A, Crystal Structure Of Wild-Type Cre Recombinase-Loxp
Synapse
pdb|1OUQ|B Chain B, Crystal Structure Of Wild-Type Cre Recombinase-Loxp
Synapse
pdb|1OUQ|E Chain E, Crystal Structure Of Wild-Type Cre Recombinase-Loxp
Synapse
pdb|1OUQ|F Chain F, Crystal Structure Of Wild-Type Cre Recombinase-Loxp
Synapse
pdb|3MGV|A Chain A, Cre Recombinase-Dna Transition State
pdb|3MGV|B Chain B, Cre Recombinase-Dna Transition State
pdb|3MGV|C Chain C, Cre Recombinase-Dna Transition State
pdb|3MGV|D Chain D, Cre Recombinase-Dna Transition State
Length = 343
Score = 25.4 bits (54), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 34 DLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLG 82
D+ AG+S P + Q G TN+ + Y N+ SE G + +L+ G
Sbjct: 298 DMARAGVSIPEIMQAGGWTNVNIVMNYIRNLD----SETGAMVRLLEDG 342
>pdb|3CRX|A Chain A, Cre RecombinaseDNA COMPLEX INTERMEDIATE I
pdb|3CRX|B Chain B, Cre RecombinaseDNA COMPLEX INTERMEDIATE I
Length = 343
Score = 25.4 bits (54), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 34 DLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLG 82
D+ AG+S P + Q G TN+ + Y N+ SE G + +L+ G
Sbjct: 298 DMARAGVSIPEIMQAGGWTNVNIVMNYIRNLD----SETGAMVRLLEDG 342
>pdb|1PVP|A Chain A, Basis For A Switch In Substrate Specificity: Crystal
Structure Of Selected Variant Of Cre Site-Specific
Recombinase, Alshg Bound To The Engineered Recognition
Site Loxm7
pdb|1PVP|B Chain B, Basis For A Switch In Substrate Specificity: Crystal
Structure Of Selected Variant Of Cre Site-Specific
Recombinase, Alshg Bound To The Engineered Recognition
Site Loxm7
Length = 349
Score = 25.4 bits (54), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 34 DLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLG 82
D+ AG+S P + Q G TN+ + Y N+ SE G + +L+ G
Sbjct: 304 DMARAGVSIPEIMQAGGWTNVNIVMNYIRNLD----SETGAMVRLLEDG 348
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 25.4 bits (54), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 40/94 (42%), Gaps = 5/94 (5%)
Query: 35 LGNAGLSGPLVPQLGLL---TNLQYLSVYKNNISGSIPSEIGNLK--KLISLGLFNNQLS 89
L NA L+ L +L T++Q LS+ N + + S LK L L L N L
Sbjct: 202 LNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLH 261
Query: 90 GAIPASIGNLRSLKFMRLNNNNLTGRIPREVIQL 123
S L SL+++ L NN+ PR L
Sbjct: 262 DVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGL 295
>pdb|4FDV|A Chain A, Cobh From Rhodobacter Capsulatus (Sb1003) In Complex With
Hba
Length = 209
Score = 25.4 bits (54), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 67 SIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRLN 108
++ E+GN + +L L+ +L GA+ +IGN + F LN
Sbjct: 106 ALAQEMGNTRSAAALELWRPKLEGAV-VAIGNAPTALFHLLN 146
>pdb|1PVQ|A Chain A, Basis For A Switch In Substrate Specificity: Crystal
Structure Of Selected Variant Of Cre Site-Specific
Recombinase, Lnsgg Bound To The Engineered Recognition
Site Loxm7
pdb|1PVQ|B Chain B, Basis For A Switch In Substrate Specificity: Crystal
Structure Of Selected Variant Of Cre Site-Specific
Recombinase, Lnsgg Bound To The Engineered Recognition
Site Loxm7
pdb|1PVR|A Chain A, Basis For A Switch In Substrate Specificity: Crystal
Structure Of Selected Variant Of Cre Site-Specific
Recombinase, Lnsgg Bound To The Loxp (Wildtype)
Recognition Site
pdb|1PVR|B Chain B, Basis For A Switch In Substrate Specificity: Crystal
Structure Of Selected Variant Of Cre Site-Specific
Recombinase, Lnsgg Bound To The Loxp (Wildtype)
Recognition Site
Length = 349
Score = 25.4 bits (54), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 34 DLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLG 82
D+ AG+S P + Q G TN+ + Y N+ SE G + +L+ G
Sbjct: 304 DMARAGVSIPEIMQAGGWTNVNIVMNYIRNLD----SETGAMVRLLEDG 348
>pdb|4AU1|A Chain A, Crystal Structure Of Cobh (Precorrin-8x Methyl Mutase)
Complexed With C5 Desmethyl-Hba
Length = 229
Score = 25.4 bits (54), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 67 SIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRLN 108
++ E+GN + +L L+ +L GA+ +IGN + F LN
Sbjct: 126 ALAQEMGNTRSAAALELWRPKLEGAV-VAIGNAPTALFHLLN 166
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.138 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,845,908
Number of Sequences: 62578
Number of extensions: 144963
Number of successful extensions: 501
Number of sequences better than 100.0: 83
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 309
Number of HSP's gapped (non-prelim): 193
length of query: 132
length of database: 14,973,337
effective HSP length: 88
effective length of query: 44
effective length of database: 9,466,473
effective search space: 416524812
effective search space used: 416524812
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)