Query 045673
Match_columns 132
No_of_seqs 108 out of 2079
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 04:21:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045673.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045673hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.7 7.6E-17 1.6E-21 126.6 10.3 128 2-130 44-194 (968)
2 PLN03150 hypothetical protein; 99.6 9.7E-16 2.1E-20 115.6 8.7 106 18-123 403-513 (623)
3 PLN00113 leucine-rich repeat r 99.4 1.1E-12 2.4E-17 103.4 7.0 104 28-131 475-578 (968)
4 KOG0617 Ras suppressor protein 99.3 2.5E-13 5.3E-18 86.7 -2.0 101 27-130 32-133 (264)
5 KOG4194 Membrane glycoprotein 99.1 5.2E-11 1.1E-15 88.0 1.9 109 23-131 240-348 (873)
6 PF13855 LRR_8: Leucine rich r 99.0 3E-10 6.5E-15 61.0 3.8 59 29-87 2-60 (61)
7 PF13855 LRR_8: Leucine rich r 99.0 4.5E-10 9.7E-15 60.3 4.1 61 52-112 1-61 (61)
8 KOG0617 Ras suppressor protein 99.0 1.7E-11 3.6E-16 78.4 -2.1 101 28-131 56-180 (264)
9 KOG4194 Membrane glycoprotein 98.9 1.4E-10 3E-15 85.8 -0.3 86 28-113 269-354 (873)
10 PLN03150 hypothetical protein; 98.9 2.1E-09 4.5E-14 81.7 4.9 79 53-131 419-497 (623)
11 PF14580 LRR_9: Leucine-rich r 98.8 1.5E-08 3.2E-13 65.4 4.6 97 28-129 42-145 (175)
12 KOG4237 Extracellular matrix p 98.8 1.2E-09 2.6E-14 77.5 -0.4 102 29-131 68-171 (498)
13 PF14580 LRR_9: Leucine-rich r 98.7 6.8E-09 1.5E-13 67.0 2.9 98 28-131 19-120 (175)
14 KOG0472 Leucine-rich repeat pr 98.7 2.1E-09 4.5E-14 76.7 -0.7 41 72-113 501-541 (565)
15 KOG0444 Cytoskeletal regulator 98.6 2.9E-09 6.3E-14 79.9 -2.4 82 44-128 214-295 (1255)
16 KOG4237 Extracellular matrix p 98.5 4.4E-08 9.6E-13 69.7 1.6 98 27-124 273-371 (498)
17 KOG0444 Cytoskeletal regulator 98.5 2.7E-08 5.7E-13 74.9 0.4 98 29-129 79-178 (1255)
18 KOG0618 Serine/threonine phosp 98.5 1.3E-08 2.8E-13 78.6 -1.5 84 27-113 382-465 (1081)
19 KOG0472 Leucine-rich repeat pr 98.4 4.1E-08 8.9E-13 70.2 -0.2 101 28-131 435-535 (565)
20 KOG0618 Serine/threonine phosp 98.3 1.4E-08 3E-13 78.5 -4.3 100 28-130 359-458 (1081)
21 PLN03210 Resistant to P. syrin 98.3 1.7E-06 3.6E-11 70.2 7.0 97 28-129 778-874 (1153)
22 PF12799 LRR_4: Leucine Rich r 98.3 4.7E-07 1E-11 45.2 2.5 36 77-113 2-37 (44)
23 KOG4658 Apoptotic ATPase [Sign 98.3 2.7E-07 5.8E-12 72.6 1.9 103 28-131 545-649 (889)
24 PRK15387 E3 ubiquitin-protein 98.3 1.1E-06 2.5E-11 68.2 4.8 45 77-122 423-467 (788)
25 KOG0532 Leucine-rich repeat (L 98.3 1.2E-07 2.5E-12 70.4 -0.8 94 31-129 146-239 (722)
26 cd00116 LRR_RI Leucine-rich re 98.2 4.1E-07 8.9E-12 63.5 1.3 38 28-65 81-121 (319)
27 PLN03210 Resistant to P. syrin 98.2 6.8E-06 1.5E-10 66.8 8.0 95 30-128 591-685 (1153)
28 KOG4579 Leucine-rich repeat (L 98.2 1.2E-07 2.5E-12 58.8 -1.7 87 27-117 52-139 (177)
29 KOG1259 Nischarin, modulator o 98.2 1.6E-07 3.6E-12 65.1 -1.3 81 28-113 307-387 (490)
30 cd00116 LRR_RI Leucine-rich re 98.2 7.2E-07 1.6E-11 62.2 1.6 87 28-114 137-235 (319)
31 KOG1259 Nischarin, modulator o 98.2 5.8E-07 1.3E-11 62.5 0.8 81 29-113 285-365 (490)
32 PRK15370 E3 ubiquitin-protein 98.1 2.4E-06 5.1E-11 66.4 3.8 83 29-121 326-408 (754)
33 COG4886 Leucine-rich repeat (L 98.1 1.8E-06 3.8E-11 62.3 2.7 97 28-128 116-213 (394)
34 KOG4579 Leucine-rich repeat (L 98.1 5.8E-08 1.3E-12 60.1 -4.3 103 24-129 23-128 (177)
35 PRK15387 E3 ubiquitin-protein 98.1 7.1E-06 1.5E-10 63.9 5.6 50 77-131 403-452 (788)
36 PRK15370 E3 ubiquitin-protein 98.1 1E-05 2.3E-10 62.9 6.0 38 77-118 263-300 (754)
37 PF12799 LRR_4: Leucine Rich r 98.0 5.5E-06 1.2E-10 41.3 2.2 35 54-89 3-37 (44)
38 KOG0532 Leucine-rich repeat (L 97.9 1.5E-06 3.3E-11 64.7 -1.6 89 28-121 166-254 (722)
39 KOG4658 Apoptotic ATPase [Sign 97.9 1.8E-05 3.9E-10 62.6 4.1 101 28-131 523-625 (889)
40 COG4886 Leucine-rich repeat (L 97.7 1.1E-05 2.4E-10 58.2 0.4 95 29-127 141-235 (394)
41 PF08263 LRRNT_2: Leucine rich 97.6 5.7E-05 1.2E-09 37.4 2.0 24 2-25 19-43 (43)
42 KOG3207 Beta-tubulin folding c 97.5 1.4E-05 3E-10 57.9 -1.0 85 28-113 222-314 (505)
43 KOG0531 Protein phosphatase 1, 97.4 9E-05 1.9E-09 54.1 1.9 82 27-113 94-175 (414)
44 KOG3207 Beta-tubulin folding c 97.3 6.2E-05 1.3E-09 54.6 0.3 96 17-113 186-284 (505)
45 KOG1859 Leucine-rich repeat pr 97.3 1.3E-05 2.9E-10 61.5 -3.3 81 29-114 188-268 (1096)
46 KOG1644 U2-associated snRNP A' 97.3 0.00042 9.2E-09 45.7 4.0 82 29-113 43-126 (233)
47 KOG1644 U2-associated snRNP A' 97.3 0.00059 1.3E-08 45.1 4.3 82 28-110 64-150 (233)
48 KOG2739 Leucine-rich acidic nu 97.2 0.00023 5.1E-09 48.3 2.3 85 28-114 43-130 (260)
49 KOG1859 Leucine-rich repeat pr 97.0 3.7E-05 8.1E-10 59.2 -3.4 94 29-129 165-259 (1096)
50 KOG2739 Leucine-rich acidic nu 96.7 0.00089 1.9E-08 45.6 1.9 79 44-126 35-115 (260)
51 KOG0531 Protein phosphatase 1, 96.7 0.00037 8E-09 50.9 -0.5 80 30-113 74-153 (414)
52 KOG3665 ZYG-1-like serine/thre 96.5 0.0012 2.7E-08 51.3 1.5 89 23-114 168-264 (699)
53 KOG2982 Uncharacterized conser 96.3 0.00083 1.8E-08 47.1 -0.6 85 29-113 72-159 (418)
54 PF00560 LRR_1: Leucine Rich R 96.2 0.00097 2.1E-08 27.9 -0.3 17 102-119 2-18 (22)
55 KOG0473 Leucine-rich repeat pr 95.9 0.00015 3.4E-09 48.9 -5.2 85 26-113 40-124 (326)
56 KOG3665 ZYG-1-like serine/thre 95.9 0.002 4.4E-08 50.1 -0.1 84 27-113 147-233 (699)
57 smart00370 LRR Leucine-rich re 95.9 0.0094 2E-07 25.8 2.1 22 99-121 1-22 (26)
58 smart00369 LRR_TYP Leucine-ric 95.9 0.0094 2E-07 25.8 2.1 22 99-121 1-22 (26)
59 KOG2123 Uncharacterized conser 95.7 0.0003 6.5E-09 48.8 -4.5 81 29-114 20-102 (388)
60 PF13504 LRR_7: Leucine rich r 95.6 0.0079 1.7E-07 23.5 1.1 13 101-113 2-14 (17)
61 KOG1909 Ran GTPase-activating 95.2 0.014 3E-07 41.7 2.0 38 28-65 92-133 (382)
62 PRK15386 type III secretion pr 94.6 0.1 2.3E-06 38.4 5.3 13 29-41 53-65 (426)
63 KOG2123 Uncharacterized conser 94.3 0.0017 3.6E-08 45.2 -4.1 75 51-131 18-92 (388)
64 PF13306 LRR_5: Leucine rich r 94.3 0.14 3E-06 30.8 4.7 53 30-84 37-89 (129)
65 PRK15386 type III secretion pr 94.3 0.17 3.6E-06 37.4 5.7 51 28-87 72-123 (426)
66 COG5238 RNA1 Ran GTPase-activa 94.0 0.11 2.3E-06 36.5 4.1 62 28-89 92-170 (388)
67 KOG1909 Ran GTPase-activating 93.2 0.071 1.5E-06 38.2 2.1 41 48-88 209-253 (382)
68 KOG0473 Leucine-rich repeat pr 93.1 0.00062 1.3E-08 46.1 -7.6 81 46-129 36-116 (326)
69 PF13516 LRR_6: Leucine Rich r 92.6 0.052 1.1E-06 22.9 0.5 15 100-114 2-16 (24)
70 PF13306 LRR_5: Leucine rich r 90.8 0.95 2.1E-05 27.0 5.1 79 29-110 13-91 (129)
71 smart00364 LRR_BAC Leucine-ric 90.3 0.19 4.1E-06 21.9 1.1 18 100-118 2-19 (26)
72 COG5238 RNA1 Ran GTPase-activa 88.6 0.79 1.7E-05 32.3 3.7 66 48-113 88-170 (388)
73 KOG3864 Uncharacterized conser 88.1 0.042 9.1E-07 36.5 -2.6 84 28-111 101-187 (221)
74 KOG2982 Uncharacterized conser 87.6 0.18 3.8E-06 35.9 0.1 77 10-86 77-156 (418)
75 smart00365 LRR_SD22 Leucine-ri 85.9 0.74 1.6E-05 20.0 1.6 15 99-113 1-15 (26)
76 KOG2120 SCF ubiquitin ligase, 84.9 0.0096 2.1E-07 42.0 -7.1 86 28-113 185-273 (419)
77 smart00368 LRR_RI Leucine rich 80.2 1.5 3.3E-05 19.1 1.5 14 100-113 2-15 (28)
78 KOG3864 Uncharacterized conser 75.3 0.39 8.5E-06 32.0 -1.7 78 52-129 101-181 (221)
79 KOG2120 SCF ubiquitin ligase, 70.0 1.9 4.2E-05 30.8 0.6 58 50-109 311-372 (419)
80 TIGR00864 PCC polycystin catio 40.7 17 0.00038 33.5 1.6 33 58-90 1-33 (2740)
81 KOG3763 mRNA export factor TAP 37.3 21 0.00045 27.7 1.4 63 26-90 216-284 (585)
82 smart00367 LRR_CC Leucine-rich 32.6 34 0.00073 14.2 1.2 15 99-113 1-16 (26)
83 TIGR00864 PCC polycystin catio 30.2 40 0.00087 31.4 2.1 33 34-66 1-33 (2740)
84 KOG1947 Leucine rich repeat pr 28.0 12 0.00026 27.5 -1.1 61 51-111 242-306 (482)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.71 E-value=7.6e-17 Score=126.62 Aligned_cols=128 Identities=33% Similarity=0.603 Sum_probs=94.1
Q ss_pred CCCCCCCCCCCCCCCCCceeeeeCCCCCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCcccc-CCcCCcE
Q 045673 2 PNNVLQSWDPTLVNPCTWFHVTCNSENSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIG-NLKKLIS 80 (132)
Q Consensus 2 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~-~l~~L~~ 80 (132)
|...+..|+.. +++|.|.|++|...++++.|++++|.+.+..+..+..++.|+.|++++|.+.+..|..+. .+.+|++
T Consensus 44 ~~~~~~~w~~~-~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~ 122 (968)
T PLN00113 44 PLKYLSNWNSS-ADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRY 122 (968)
T ss_pred CcccCCCCCCC-CCCCcCcceecCCCCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCE
Confidence 45567889743 589999999998778999999999999988888888999999999999988776665543 5666666
Q ss_pred EEcccccccc----------------------cCCcccCCCCCCCEEEccCccccccCchHHHHhccCCcee
Q 045673 81 LGLFNNQLSG----------------------AIPASIGNLRSLKFMRLNNNNLTGRIPREVIQLIINGSLR 130 (132)
Q Consensus 81 l~ls~n~~~~----------------------~~p~~l~~l~~L~~l~l~~n~~~~~~p~~~~~l~~~~~L~ 130 (132)
+++++|.+.+ ..|..++.+++|++|++++|.+.+.+|..+..+..++.|.
T Consensus 123 L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 194 (968)
T PLN00113 123 LNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLT 194 (968)
T ss_pred EECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeee
Confidence 6666665543 4444555666666666666666666666666666655554
No 2
>PLN03150 hypothetical protein; Provisional
Probab=99.64 E-value=9.7e-16 Score=115.63 Aligned_cols=106 Identities=33% Similarity=0.586 Sum_probs=98.2
Q ss_pred CceeeeeCCC-----CCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccC
Q 045673 18 TWFHVTCNSE-----NSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAI 92 (132)
Q Consensus 18 ~~~~~~~~~~-----~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~ 92 (132)
.|.|+.|... ..++.|++++|.+.+.+|..+..+.+|+.|++++|.+.+..|..+..+++|+.+++++|.+.+.+
T Consensus 403 ~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~i 482 (623)
T PLN03150 403 PWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482 (623)
T ss_pred ccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCC
Confidence 7999999521 24889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCCCCCCEEEccCccccccCchHHHHh
Q 045673 93 PASIGNLRSLKFMRLNNNNLTGRIPREVIQL 123 (132)
Q Consensus 93 p~~l~~l~~L~~l~l~~n~~~~~~p~~~~~l 123 (132)
|..++.+++|+.|++++|+++|.+|..++.+
T Consensus 483 P~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~ 513 (623)
T PLN03150 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGR 513 (623)
T ss_pred chHHhcCCCCCEEECcCCcccccCChHHhhc
Confidence 9999999999999999999999999988764
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.38 E-value=1.1e-12 Score=103.39 Aligned_cols=104 Identities=37% Similarity=0.563 Sum_probs=87.1
Q ss_pred CCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEEc
Q 045673 28 NSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRL 107 (132)
Q Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~l 107 (132)
.+++.|++++|.+.+..|..+..++.|+.|++++|.+.+..|..+..+++|+.+++++|.+.+..|..+..+++|+.|++
T Consensus 475 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 554 (968)
T PLN00113 475 KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDL 554 (968)
T ss_pred ccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEEC
Confidence 46788888888888878888888888888888888888888888888888888888888888888888888888888888
Q ss_pred cCccccccCchHHHHhccCCceee
Q 045673 108 NNNNLTGRIPREVIQLIINGSLRI 131 (132)
Q Consensus 108 ~~n~~~~~~p~~~~~l~~~~~L~~ 131 (132)
++|++++.+|..+..+..++.|.+
T Consensus 555 s~N~l~~~~p~~l~~l~~L~~l~l 578 (968)
T PLN00113 555 SQNQLSGEIPKNLGNVESLVQVNI 578 (968)
T ss_pred CCCcccccCChhHhcCcccCEEec
Confidence 888888888888888777766654
No 4
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.26 E-value=2.5e-13 Score=86.68 Aligned_cols=101 Identities=27% Similarity=0.460 Sum_probs=86.4
Q ss_pred CCCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEE
Q 045673 27 ENSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMR 106 (132)
Q Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~ 106 (132)
..+++.|.++.|.++ .+|+.+..+..|+.+.+.+|++. ..|..+..+++|+.+++..|++. .+|..|+.++.|+.|+
T Consensus 32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levld 108 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLD 108 (264)
T ss_pred hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhh
Confidence 357888999999998 57778889999999999999998 88999999999999999999988 7899999999999999
Q ss_pred ccCcccc-ccCchHHHHhccCCcee
Q 045673 107 LNNNNLT-GRIPREVIQLIINGSLR 130 (132)
Q Consensus 107 l~~n~~~-~~~p~~~~~l~~~~~L~ 130 (132)
+..|++. ..+|..|+.+..++.|.
T Consensus 109 ltynnl~e~~lpgnff~m~tlraly 133 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALY 133 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHH
Confidence 9888887 46788888877665543
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.07 E-value=5.2e-11 Score=88.01 Aligned_cols=109 Identities=18% Similarity=0.069 Sum_probs=82.5
Q ss_pred eeCCCCCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCC
Q 045673 23 TCNSENSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSL 102 (132)
Q Consensus 23 ~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L 102 (132)
+....+.++.|.+..|.+.....+.|..|.++++|++..|++...-.+.+.+++.|+.+++++|.|....+..+...++|
T Consensus 240 tFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL 319 (873)
T KOG4194|consen 240 TFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKL 319 (873)
T ss_pred hhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccc
Confidence 33344566777777777777777778888888888888888876667777888888888888888877777778888888
Q ss_pred CEEEccCccccccCchHHHHhccCCceee
Q 045673 103 KFMRLNNNNLTGRIPREVIQLIINGSLRI 131 (132)
Q Consensus 103 ~~l~l~~n~~~~~~p~~~~~l~~~~~L~~ 131 (132)
+.|+|+.|+++..-+..+..+..+..|++
T Consensus 320 ~~LdLs~N~i~~l~~~sf~~L~~Le~LnL 348 (873)
T KOG4194|consen 320 KELDLSSNRITRLDEGSFRVLSQLEELNL 348 (873)
T ss_pred eeEeccccccccCChhHHHHHHHhhhhcc
Confidence 88888888888545566777766666653
No 6
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.04 E-value=3e-10 Score=60.96 Aligned_cols=59 Identities=31% Similarity=0.372 Sum_probs=27.1
Q ss_pred CeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEccccc
Q 045673 29 SVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQ 87 (132)
Q Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~ 87 (132)
+++.|++++|.+....+..|..+++|+.+++++|.+....+..+..+++|+++++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34445555555543333444444444444444444443333444444444444444443
No 7
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.03 E-value=4.5e-10 Score=60.27 Aligned_cols=61 Identities=36% Similarity=0.577 Sum_probs=54.6
Q ss_pred CCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEEccCccc
Q 045673 52 TNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRLNNNNL 112 (132)
Q Consensus 52 ~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~l~~n~~ 112 (132)
++|+.+++++|.+....+..+..+++|+.+++++|.+....|..|..+++|+.+++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4689999999999977778889999999999999999866667899999999999999975
No 8
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.01 E-value=1.7e-11 Score=78.40 Aligned_cols=101 Identities=27% Similarity=0.458 Sum_probs=65.9
Q ss_pred CCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccc-----------------
Q 045673 28 NSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSG----------------- 90 (132)
Q Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~----------------- 90 (132)
.+++.|.+.+|++. ..|.+++.+++|+.+.+.-|.+. ..|..+..++.|+.+|+++|.+..
T Consensus 56 ~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlraly 133 (264)
T KOG0617|consen 56 KNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALY 133 (264)
T ss_pred hhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHH
Confidence 35677777777776 35566666666666666666665 556566666666666665554421
Q ss_pred -------cCCcccCCCCCCCEEEccCccccccCchHHHHhccCCceee
Q 045673 91 -------AIPASIGNLRSLKFMRLNNNNLTGRIPREVIQLIINGSLRI 131 (132)
Q Consensus 91 -------~~p~~l~~l~~L~~l~l~~n~~~~~~p~~~~~l~~~~~L~~ 131 (132)
.+|..++++++|+.|.+..|.+- ++|.+++.+..+++|++
T Consensus 134 l~dndfe~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhi 180 (264)
T KOG0617|consen 134 LGDNDFEILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHI 180 (264)
T ss_pred hcCCCcccCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhc
Confidence 45666677777777777777776 67777777777766654
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.93 E-value=1.4e-10 Score=85.81 Aligned_cols=86 Identities=22% Similarity=0.166 Sum_probs=50.6
Q ss_pred CCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEEc
Q 045673 28 NSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRL 107 (132)
Q Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~l 107 (132)
..++.|+++.|++.....+.+.++.+|+.|+++.|.|..+-+..+...++|+++++++|.++...++.|..+..|+.|+|
T Consensus 269 ~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnL 348 (873)
T KOG4194|consen 269 EKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNL 348 (873)
T ss_pred cccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcc
Confidence 34666667777666555556666666666666666666666666666666666666666666333334444444444444
Q ss_pred cCcccc
Q 045673 108 NNNNLT 113 (132)
Q Consensus 108 ~~n~~~ 113 (132)
++|.+.
T Consensus 349 s~Nsi~ 354 (873)
T KOG4194|consen 349 SHNSID 354 (873)
T ss_pred cccchH
Confidence 444444
No 10
>PLN03150 hypothetical protein; Provisional
Probab=98.89 E-value=2.1e-09 Score=81.71 Aligned_cols=79 Identities=32% Similarity=0.537 Sum_probs=73.4
Q ss_pred CCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEEccCccccccCchHHHHhccCCceee
Q 045673 53 NLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRLNNNNLTGRIPREVIQLIINGSLRI 131 (132)
Q Consensus 53 ~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~l~~n~~~~~~p~~~~~l~~~~~L~~ 131 (132)
.++.|++++|.+.+..|..+..+++|+.+++++|.+.+.+|..++.+++|+.|++++|+++|.+|+.++.+..++.|.+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 3678899999999999999999999999999999999899999999999999999999999999999999998888764
No 11
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.75 E-value=1.5e-08 Score=65.45 Aligned_cols=97 Identities=26% Similarity=0.303 Sum_probs=40.9
Q ss_pred CCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccc-cCCcCCcEEEcccccccccCC--cccCCCCCCCE
Q 045673 28 NSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEI-GNLKKLISLGLFNNQLSGAIP--ASIGNLRSLKF 104 (132)
Q Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~-~~l~~L~~l~ls~n~~~~~~p--~~l~~l~~L~~ 104 (132)
.+++.|++++|.+... +.+..+..|+.|++++|.++. ..+.+ ..+++|+.+++++|++.. +. ..++.+++|+.
T Consensus 42 ~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L~L~~N~I~~-l~~l~~L~~l~~L~~ 117 (175)
T PF14580_consen 42 DKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQELYLSNNKISD-LNELEPLSSLPKLRV 117 (175)
T ss_dssp TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--EEE-TTS---S-CCCCGGGGG-TT--E
T ss_pred cCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc-cccchHHhCCcCCEEECcCCcCCC-hHHhHHHHcCCCcce
Confidence 5678888888888743 246678888888888888873 33333 357788888888888862 22 35667788888
Q ss_pred EEccCccccccCc----hHHHHhccCCce
Q 045673 105 MRLNNNNLTGRIP----REVIQLIINGSL 129 (132)
Q Consensus 105 l~l~~n~~~~~~p----~~~~~l~~~~~L 129 (132)
|++.+|++.. .+ -.+..+++++.|
T Consensus 118 L~L~~NPv~~-~~~YR~~vi~~lP~Lk~L 145 (175)
T PF14580_consen 118 LSLEGNPVCE-KKNYRLFVIYKLPSLKVL 145 (175)
T ss_dssp EE-TT-GGGG-STTHHHHHHHH-TT-SEE
T ss_pred eeccCCcccc-hhhHHHHHHHHcChhhee
Confidence 8888888873 33 234445554443
No 12
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.75 E-value=1.2e-09 Score=77.48 Aligned_cols=102 Identities=27% Similarity=0.361 Sum_probs=86.0
Q ss_pred CeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcc-cccccccCCc-ccCCCCCCCEEE
Q 045673 29 SVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLF-NNQLSGAIPA-SIGNLRSLKFMR 106 (132)
Q Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls-~n~~~~~~p~-~l~~l~~L~~l~ 106 (132)
..+.+++..|.|+...+..|..+.+|+.|+++.|.|+.+.|..|.++.++..+.+- +|+|+ .+|. .|+.+.+++-|.
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRLL 146 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHHh
Confidence 67899999999998888999999999999999999998999999999998887664 59999 5565 688888888888
Q ss_pred ccCccccccCchHHHHhccCCceee
Q 045673 107 LNNNNLTGRIPREVIQLIINGSLRI 131 (132)
Q Consensus 107 l~~n~~~~~~p~~~~~l~~~~~L~~ 131 (132)
+.-|.+.-...+.+..++.+..|.+
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLsl 171 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSL 171 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcc
Confidence 8888888666677888877655543
No 13
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.75 E-value=6.8e-09 Score=66.97 Aligned_cols=98 Identities=26% Similarity=0.375 Sum_probs=35.1
Q ss_pred CCeEEEEcCCCCccccCccccc-cCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCccc-CCCCCCCEE
Q 045673 28 NSVIRVDLGNAGLSGPLVPQLG-LLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASI-GNLRSLKFM 105 (132)
Q Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~-~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l-~~l~~L~~l 105 (132)
-+++.|++++|.|+.. ..+. .+.+|+.|++++|.+. .+. .+..++.|+.+++++|.++ .+...+ ..+++|+.|
T Consensus 19 ~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 19 VKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQEL 93 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EE
T ss_pred cccccccccccccccc--cchhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEE
Confidence 3578999999999843 2344 5789999999999998 333 5778999999999999998 555444 468999999
Q ss_pred EccCccccccCc--hHHHHhccCCceee
Q 045673 106 RLNNNNLTGRIP--REVIQLIINGSLRI 131 (132)
Q Consensus 106 ~l~~n~~~~~~p--~~~~~l~~~~~L~~ 131 (132)
++++|++.. +- ..+..++.++.|.+
T Consensus 94 ~L~~N~I~~-l~~l~~L~~l~~L~~L~L 120 (175)
T PF14580_consen 94 YLSNNKISD-LNELEPLSSLPKLRVLSL 120 (175)
T ss_dssp E-TTS---S-CCCCGGGGG-TT--EEE-
T ss_pred ECcCCcCCC-hHHhHHHHcCCCcceeec
Confidence 999999983 32 45555666655543
No 14
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.69 E-value=2.1e-09 Score=76.65 Aligned_cols=41 Identities=34% Similarity=0.672 Sum_probs=20.7
Q ss_pred ccCCcCCcEEEcccccccccCCcccCCCCCCCEEEccCcccc
Q 045673 72 IGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRLNNNNLT 113 (132)
Q Consensus 72 ~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~l~~n~~~ 113 (132)
+..+.+|..+|+.+|.+. .+|..+++|++|+.|++.+|+|.
T Consensus 501 l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 501 LKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 444444555555555554 44555555555555555555554
No 15
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.59 E-value=2.9e-09 Score=79.92 Aligned_cols=82 Identities=26% Similarity=0.390 Sum_probs=40.3
Q ss_pred CccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEEccCccccccCchHHHHh
Q 045673 44 LVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRLNNNNLTGRIPREVIQL 123 (132)
Q Consensus 44 ~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~l~~n~~~~~~p~~~~~l 123 (132)
+|+++..|..|..++++.|.+. +.|+.+..+++|+.+++|+|.++ .+......-.+++.|+++.|+++ .+|+.+-++
T Consensus 214 ~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL 290 (1255)
T KOG0444|consen 214 IPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKL 290 (1255)
T ss_pred CCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhh
Confidence 3444444555555555555555 45555555555555555555554 33333333344455555555555 455555554
Q ss_pred ccCCc
Q 045673 124 IINGS 128 (132)
Q Consensus 124 ~~~~~ 128 (132)
+.++.
T Consensus 291 ~kL~k 295 (1255)
T KOG0444|consen 291 TKLTK 295 (1255)
T ss_pred HHHHH
Confidence 44443
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.50 E-value=4.4e-08 Score=69.72 Aligned_cols=98 Identities=18% Similarity=0.185 Sum_probs=79.6
Q ss_pred CCCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEE
Q 045673 27 ENSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMR 106 (132)
Q Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~ 106 (132)
.++++.|++++|.+++..+..|.+..++++|.+..|++.......+.++..|+.+++.+|+++...|..|..+.+|..++
T Consensus 273 L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~ 352 (498)
T KOG4237|consen 273 LPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLN 352 (498)
T ss_pred cccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeee
Confidence 46889999999999988888899999999999999998866667788889999999999999878888888889999999
Q ss_pred ccCcccccc-CchHHHHhc
Q 045673 107 LNNNNLTGR-IPREVIQLI 124 (132)
Q Consensus 107 l~~n~~~~~-~p~~~~~l~ 124 (132)
+-.|.+.-- .-+.++...
T Consensus 353 l~~Np~~CnC~l~wl~~Wl 371 (498)
T KOG4237|consen 353 LLSNPFNCNCRLAWLGEWL 371 (498)
T ss_pred hccCcccCccchHHHHHHH
Confidence 988877621 224444443
No 17
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.49 E-value=2.7e-08 Score=74.94 Aligned_cols=98 Identities=27% Similarity=0.401 Sum_probs=58.2
Q ss_pred CeEEEEcCCCCcc-ccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcc-cCCCCCCCEEE
Q 045673 29 SVIRVDLGNAGLS-GPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPAS-IGNLRSLKFMR 106 (132)
Q Consensus 29 ~l~~L~l~~n~l~-~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~-l~~l~~L~~l~ 106 (132)
.++++.+..|++. .-+|+.+..|..|..++++.|++. ..|..+....++..+++|+|.|. .+|.. +-+++-|.+|+
T Consensus 79 ~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLD 156 (1255)
T KOG0444|consen 79 RLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLD 156 (1255)
T ss_pred hhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhc
Confidence 4555566666654 235556666666777777776666 66666666666666666666666 44543 33556666666
Q ss_pred ccCccccccCchHHHHhccCCce
Q 045673 107 LNNNNLTGRIPREVIQLIINGSL 129 (132)
Q Consensus 107 l~~n~~~~~~p~~~~~l~~~~~L 129 (132)
|++|.+. .+|..+..+..++.|
T Consensus 157 LS~NrLe-~LPPQ~RRL~~LqtL 178 (1255)
T KOG0444|consen 157 LSNNRLE-MLPPQIRRLSMLQTL 178 (1255)
T ss_pred cccchhh-hcCHHHHHHhhhhhh
Confidence 6666666 555555555444444
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.49 E-value=1.3e-08 Score=78.62 Aligned_cols=84 Identities=27% Similarity=0.412 Sum_probs=70.6
Q ss_pred CCCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEE
Q 045673 27 ENSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMR 106 (132)
Q Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~ 106 (132)
..+++.|++++|++.......+.+++.|+.|.+++|.+. .+|..+..+..|+.+....|.+. .+| .+..++.|+++|
T Consensus 382 ~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lD 458 (1081)
T KOG0618|consen 382 FKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLD 458 (1081)
T ss_pred ccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEe
Confidence 468999999999998766677888999999999999988 77777788888888888888887 677 677888888888
Q ss_pred ccCcccc
Q 045673 107 LNNNNLT 113 (132)
Q Consensus 107 l~~n~~~ 113 (132)
++.|+++
T Consensus 459 lS~N~L~ 465 (1081)
T KOG0618|consen 459 LSCNNLS 465 (1081)
T ss_pred cccchhh
Confidence 8888887
No 19
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.42 E-value=4.1e-08 Score=70.20 Aligned_cols=101 Identities=29% Similarity=0.381 Sum_probs=88.7
Q ss_pred CCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEEc
Q 045673 28 NSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRL 107 (132)
Q Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~l 107 (132)
.+++-|++++|.+. .+|.+++.+-.|+.++++.|++. ..|..+..+..++.+-.+.|.+....|+.+..|.+|..||+
T Consensus 435 ~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL 512 (565)
T KOG0472|consen 435 QKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDL 512 (565)
T ss_pred hcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceecc
Confidence 47888999999998 57888999999999999999988 78888877788888777889998555567999999999999
Q ss_pred cCccccccCchHHHHhccCCceee
Q 045673 108 NNNNLTGRIPREVIQLIINGSLRI 131 (132)
Q Consensus 108 ~~n~~~~~~p~~~~~l~~~~~L~~ 131 (132)
.+|.+. .+|..++++..+++|.+
T Consensus 513 ~nNdlq-~IPp~LgnmtnL~hLeL 535 (565)
T KOG0472|consen 513 QNNDLQ-QIPPILGNMTNLRHLEL 535 (565)
T ss_pred CCCchh-hCChhhccccceeEEEe
Confidence 999999 89999999999988865
No 20
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.34 E-value=1.4e-08 Score=78.47 Aligned_cols=100 Identities=27% Similarity=0.376 Sum_probs=84.9
Q ss_pred CCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEEc
Q 045673 28 NSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRL 107 (132)
Q Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~l 107 (132)
..++.|++.+|.++...-+.+..+.+|+.|++++|.+.......+.++..|+++++|+|+++ .+|..+..+..|++|..
T Consensus 359 ~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~a 437 (1081)
T KOG0618|consen 359 AALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRA 437 (1081)
T ss_pred HHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhh
Confidence 45788999999999877788889999999999999998455556778889999999999999 78888889999999999
Q ss_pred cCccccccCchHHHHhccCCcee
Q 045673 108 NNNNLTGRIPREVIQLIINGSLR 130 (132)
Q Consensus 108 ~~n~~~~~~p~~~~~l~~~~~L~ 130 (132)
..|++. ..| ++.+++.++.+.
T Consensus 438 hsN~l~-~fP-e~~~l~qL~~lD 458 (1081)
T KOG0618|consen 438 HSNQLL-SFP-ELAQLPQLKVLD 458 (1081)
T ss_pred cCCcee-ech-hhhhcCcceEEe
Confidence 999999 788 677777666554
No 21
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.34 E-value=1.7e-06 Score=70.22 Aligned_cols=97 Identities=20% Similarity=0.182 Sum_probs=58.5
Q ss_pred CCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEEc
Q 045673 28 NSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRL 107 (132)
Q Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~l 107 (132)
..++.|++++|.....+|..+..+++|+.|++.+|..-...|..+ .+++|+.+++++|.....+|.. .++++.|++
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~L 853 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNL 853 (1153)
T ss_pred ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeEC
Confidence 468888888887766788888889999999998875333455443 4566666666654322233321 234555555
Q ss_pred cCccccccCchHHHHhccCCce
Q 045673 108 NNNNLTGRIPREVIQLIINGSL 129 (132)
Q Consensus 108 ~~n~~~~~~p~~~~~l~~~~~L 129 (132)
+.|.++ .+|..+..+..++.|
T Consensus 854 s~n~i~-~iP~si~~l~~L~~L 874 (1153)
T PLN03210 854 SRTGIE-EVPWWIEKFSNLSFL 874 (1153)
T ss_pred CCCCCc-cChHHHhcCCCCCEE
Confidence 555555 455544444444443
No 22
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.33 E-value=4.7e-07 Score=45.24 Aligned_cols=36 Identities=36% Similarity=0.610 Sum_probs=25.3
Q ss_pred CCcEEEcccccccccCCcccCCCCCCCEEEccCcccc
Q 045673 77 KLISLGLFNNQLSGAIPASIGNLRSLKFMRLNNNNLT 113 (132)
Q Consensus 77 ~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~l~~n~~~ 113 (132)
+|+++++++|.++ .+|..+++++.|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 5677777777777 55666777777777877777777
No 23
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.31 E-value=2.7e-07 Score=72.60 Aligned_cols=103 Identities=25% Similarity=0.321 Sum_probs=77.9
Q ss_pred CCeEEEEcCCCC--ccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEE
Q 045673 28 NSVIRVDLGNAG--LSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFM 105 (132)
Q Consensus 28 ~~l~~L~l~~n~--l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l 105 (132)
+.+++|-+.+|. +.......|..|+.|.+||+++|.-.+.+|..+..+-+|++++++...+. .+|..++++..|.+|
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL 623 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence 357788777775 44334445777888889998887766688888888888888888888888 788888888888888
Q ss_pred EccCccccccCchHHHHhccCCceee
Q 045673 106 RLNNNNLTGRIPREVIQLIINGSLRI 131 (132)
Q Consensus 106 ~l~~n~~~~~~p~~~~~l~~~~~L~~ 131 (132)
++..+.....+|..+..+..++.|.+
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l 649 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRL 649 (889)
T ss_pred ccccccccccccchhhhcccccEEEe
Confidence 88877665455666666777666654
No 24
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.28 E-value=1.1e-06 Score=68.16 Aligned_cols=45 Identities=31% Similarity=0.470 Sum_probs=29.3
Q ss_pred CCcEEEcccccccccCCcccCCCCCCCEEEccCccccccCchHHHH
Q 045673 77 KLISLGLFNNQLSGAIPASIGNLRSLKFMRLNNNNLTGRIPREVIQ 122 (132)
Q Consensus 77 ~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~l~~n~~~~~~p~~~~~ 122 (132)
+|+.+++++|.++ .+|..+..++.|+.+++++|++++..|..+..
T Consensus 423 ~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~ 467 (788)
T PRK15387 423 GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE 467 (788)
T ss_pred hhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence 4555566666665 56666667777777777777777666555533
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.27 E-value=1.2e-07 Score=70.37 Aligned_cols=94 Identities=28% Similarity=0.401 Sum_probs=39.6
Q ss_pred EEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEEccCc
Q 045673 31 IRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRLNNN 110 (132)
Q Consensus 31 ~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~l~~n 110 (132)
+.|.+++|++. .+|..++....|..++.+.|.+. ..|..+.++.+|+.+.+.+|.+. .+|..+. .-.|..||++.|
T Consensus 146 kvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~-~LpLi~lDfScN 221 (722)
T KOG0532|consen 146 KVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCN 221 (722)
T ss_pred eeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CCceeeeecccC
Confidence 33444444443 23333334444444444444443 33333333333333333333333 2333333 123445555555
Q ss_pred cccccCchHHHHhccCCce
Q 045673 111 NLTGRIPREVIQLIINGSL 129 (132)
Q Consensus 111 ~~~~~~p~~~~~l~~~~~L 129 (132)
++. .+|..|..|..++.|
T Consensus 222 kis-~iPv~fr~m~~Lq~l 239 (722)
T KOG0532|consen 222 KIS-YLPVDFRKMRHLQVL 239 (722)
T ss_pred cee-ecchhhhhhhhheee
Confidence 555 555555555554444
No 26
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.23 E-value=4.1e-07 Score=63.47 Aligned_cols=38 Identities=24% Similarity=0.244 Sum_probs=18.7
Q ss_pred CCeEEEEcCCCCccccCccccccCCC---CcEEEeeeCcce
Q 045673 28 NSVIRVDLGNAGLSGPLVPQLGLLTN---LQYLSVYKNNIS 65 (132)
Q Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~---L~~l~l~~~~~~ 65 (132)
.+++.|++++|.+....+..+..+.. |+.+++++|.++
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~ 121 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLG 121 (319)
T ss_pred CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccc
Confidence 35555566555554333333333333 555555555544
No 27
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.22 E-value=6.8e-06 Score=66.75 Aligned_cols=95 Identities=14% Similarity=0.139 Sum_probs=38.8
Q ss_pred eEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEEccC
Q 045673 30 VIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRLNN 109 (132)
Q Consensus 30 l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~l~~ 109 (132)
++.|++.++++. .+|..| .+.+|..|++.++.+. ..+..+..+++|+.++++++.....+|. ++.+++|+.|++++
T Consensus 591 Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~ 666 (1153)
T PLN03210 591 LRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSD 666 (1153)
T ss_pred cEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecC
Confidence 444444444443 223322 2344445555444444 3333334444444444444332213332 33444444444444
Q ss_pred ccccccCchHHHHhccCCc
Q 045673 110 NNLTGRIPREVIQLIINGS 128 (132)
Q Consensus 110 n~~~~~~p~~~~~l~~~~~ 128 (132)
|.....+|..+..+..++.
T Consensus 667 c~~L~~lp~si~~L~~L~~ 685 (1153)
T PLN03210 667 CSSLVELPSSIQYLNKLED 685 (1153)
T ss_pred CCCccccchhhhccCCCCE
Confidence 3322244444444443333
No 28
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.20 E-value=1.2e-07 Score=58.75 Aligned_cols=87 Identities=24% Similarity=0.355 Sum_probs=64.9
Q ss_pred CCCeEEEEcCCCCccccCccccc-cCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEE
Q 045673 27 ENSVIRVDLGNAGLSGPLVPQLG-LLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFM 105 (132)
Q Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~-~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l 105 (132)
..+++.+++++|.+.. +|+.|. .++.++.+.+.+|.++ ..|.++..++.|+.++++.|.+. ..|..+..+.++..|
T Consensus 52 ~~el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 52 GYELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDML 128 (177)
T ss_pred CceEEEEecccchhhh-CCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHh
Confidence 4567888888888874 344443 4567788888888888 77777888888888888888887 667777777778888
Q ss_pred EccCccccccCc
Q 045673 106 RLNNNNLTGRIP 117 (132)
Q Consensus 106 ~l~~n~~~~~~p 117 (132)
+...|.+. ++|
T Consensus 129 ds~~na~~-eid 139 (177)
T KOG4579|consen 129 DSPENARA-EID 139 (177)
T ss_pred cCCCCccc-cCc
Confidence 87777776 555
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.19 E-value=1.6e-07 Score=65.14 Aligned_cols=81 Identities=21% Similarity=0.243 Sum_probs=54.2
Q ss_pred CCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEEc
Q 045673 28 NSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRL 107 (132)
Q Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~l 107 (132)
+.++.|+++.|++.. + ..+..+++|+.||+++|.++ .+.+....+.+++.+.+++|.+. . -+.++++.+|..||+
T Consensus 307 Pkir~L~lS~N~i~~-v-~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE-~-LSGL~KLYSLvnLDl 381 (490)
T KOG1259|consen 307 PKLRRLILSQNRIRT-V-QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIE-T-LSGLRKLYSLVNLDL 381 (490)
T ss_pred cceeEEeccccceee-e-hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHh-h-hhhhHhhhhheeccc
Confidence 467777777777752 2 23666777777777777776 55555556666667777776665 2 245667777778888
Q ss_pred cCcccc
Q 045673 108 NNNNLT 113 (132)
Q Consensus 108 ~~n~~~ 113 (132)
..|+|.
T Consensus 382 ~~N~Ie 387 (490)
T KOG1259|consen 382 SSNQIE 387 (490)
T ss_pred cccchh
Confidence 777776
No 30
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.18 E-value=7.2e-07 Score=62.24 Aligned_cols=87 Identities=28% Similarity=0.411 Sum_probs=43.8
Q ss_pred CCeEEEEcCCCCcccc----CccccccCCCCcEEEeeeCcceec----CCccccCCcCCcEEEccccccccc----CCcc
Q 045673 28 NSVIRVDLGNAGLSGP----LVPQLGLLTNLQYLSVYKNNISGS----IPSEIGNLKKLISLGLFNNQLSGA----IPAS 95 (132)
Q Consensus 28 ~~l~~L~l~~n~l~~~----~~~~~~~l~~L~~l~l~~~~~~~~----~~~~~~~l~~L~~l~ls~n~~~~~----~p~~ 95 (132)
.+++.|++++|.+++. ....+..+..++.+++.+|.+.+. .+..+...++|+.+++++|.+.+. ++..
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 216 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET 216 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence 4556666666665521 122333445566666666655421 112223334666666666655421 2223
Q ss_pred cCCCCCCCEEEccCccccc
Q 045673 96 IGNLRSLKFMRLNNNNLTG 114 (132)
Q Consensus 96 l~~l~~L~~l~l~~n~~~~ 114 (132)
+..+++|+.|++++|.+++
T Consensus 217 ~~~~~~L~~L~ls~n~l~~ 235 (319)
T cd00116 217 LASLKSLEVLNLGDNNLTD 235 (319)
T ss_pred hcccCCCCEEecCCCcCch
Confidence 4455666666666666653
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.16 E-value=5.8e-07 Score=62.51 Aligned_cols=81 Identities=21% Similarity=0.300 Sum_probs=64.8
Q ss_pred CeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEEcc
Q 045673 29 SVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRLN 108 (132)
Q Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~l~ 108 (132)
-++.+++++|.|+ .+..++.-.+.++.|+++.|.+. ... .++.+++|..+|+++|.++ .+-.---++-++..|.++
T Consensus 285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhhccccccchh-hhhhhhhhccceeEEecccccee-eeh-hhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehh
Confidence 4788999999998 45667777899999999999987 332 3788999999999999987 433323366788999999
Q ss_pred Ccccc
Q 045673 109 NNNLT 113 (132)
Q Consensus 109 ~n~~~ 113 (132)
.|.++
T Consensus 361 ~N~iE 365 (490)
T KOG1259|consen 361 QNKIE 365 (490)
T ss_pred hhhHh
Confidence 99887
No 32
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.14 E-value=2.4e-06 Score=66.39 Aligned_cols=83 Identities=28% Similarity=0.502 Sum_probs=39.2
Q ss_pred CeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEEcc
Q 045673 29 SVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRLN 108 (132)
Q Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~l~ 108 (132)
+++.|++++|.++. +|..+ .+.|+.|++++|.+. .+|..+. ++|+.+++++|.+. .+|..+. ..|+.|+++
T Consensus 326 sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs 396 (754)
T PRK15370 326 GLKTLEAGENALTS-LPASL--PPELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQAS 396 (754)
T ss_pred cceeccccCCcccc-CChhh--cCcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhc
Confidence 44555555555543 23222 245555555555554 3333321 35555555555555 3444332 235555555
Q ss_pred CccccccCchHHH
Q 045673 109 NNNLTGRIPREVI 121 (132)
Q Consensus 109 ~n~~~~~~p~~~~ 121 (132)
+|++. .+|..+.
T Consensus 397 ~N~L~-~LP~sl~ 408 (754)
T PRK15370 397 RNNLV-RLPESLP 408 (754)
T ss_pred cCCcc-cCchhHH
Confidence 55555 4444433
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.12 E-value=1.8e-06 Score=62.34 Aligned_cols=97 Identities=33% Similarity=0.527 Sum_probs=75.1
Q ss_pred CCeEEEEcCCCCccccCccccccCC-CCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEE
Q 045673 28 NSVIRVDLGNAGLSGPLVPQLGLLT-NLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMR 106 (132)
Q Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~-~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~ 106 (132)
..++.|++.+|.+.. +++....+. .|+.++++.|.+. ..+..+..++.|+.++++.|.+. .+|......+.|+.++
T Consensus 116 ~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 116 TNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLD 192 (394)
T ss_pred cceeEEecCCccccc-Cccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhee
Confidence 468889999999884 455555564 8999999999988 66667788899999999999998 6676665788899999
Q ss_pred ccCccccccCchHHHHhccCCc
Q 045673 107 LNNNNLTGRIPREVIQLIINGS 128 (132)
Q Consensus 107 l~~n~~~~~~p~~~~~l~~~~~ 128 (132)
+++|++. .+|..+.....+..
T Consensus 193 ls~N~i~-~l~~~~~~~~~L~~ 213 (394)
T COG4886 193 LSGNKIS-DLPPEIELLSALEE 213 (394)
T ss_pred ccCCccc-cCchhhhhhhhhhh
Confidence 9999999 77776544433333
No 34
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.11 E-value=5.8e-08 Score=60.07 Aligned_cols=103 Identities=24% Similarity=0.346 Sum_probs=78.6
Q ss_pred eCCCCCeEEEEcCCCCccc--cCccccccCCCCcEEEeeeCcceecCCcccc-CCcCCcEEEcccccccccCCcccCCCC
Q 045673 24 CNSENSVIRVDLGNAGLSG--PLVPQLGLLTNLQYLSVYKNNISGSIPSEIG-NLKKLISLGLFNNQLSGAIPASIGNLR 100 (132)
Q Consensus 24 ~~~~~~l~~L~l~~n~l~~--~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~-~l~~L~~l~ls~n~~~~~~p~~l~~l~ 100 (132)
|.+...+-.++++++++-- ..+..+....+|..+++++|.+. .+|+.+. ..+....+++++|.+. .+|..+..++
T Consensus 23 cedakE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~ 100 (177)
T KOG4579|consen 23 CEDAKELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMP 100 (177)
T ss_pred hHHHHHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhH
Confidence 5444556678888887641 12334556677888899999998 6666654 4568899999999999 8899999999
Q ss_pred CCCEEEccCccccccCchHHHHhccCCce
Q 045673 101 SLKFMRLNNNNLTGRIPREVIQLIINGSL 129 (132)
Q Consensus 101 ~L~~l~l~~n~~~~~~p~~~~~l~~~~~L 129 (132)
.|+.+++..|.+. ..|..+..+.++..|
T Consensus 101 aLr~lNl~~N~l~-~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 101 ALRSLNLRFNPLN-AEPRVIAPLIKLDML 128 (177)
T ss_pred HhhhcccccCccc-cchHHHHHHHhHHHh
Confidence 9999999999999 778888886655433
No 35
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.09 E-value=7.1e-06 Score=63.88 Aligned_cols=50 Identities=26% Similarity=0.423 Sum_probs=30.4
Q ss_pred CCcEEEcccccccccCCcccCCCCCCCEEEccCccccccCchHHHHhccCCceee
Q 045673 77 KLISLGLFNNQLSGAIPASIGNLRSLKFMRLNNNNLTGRIPREVIQLIINGSLRI 131 (132)
Q Consensus 77 ~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~l~~n~~~~~~p~~~~~l~~~~~L~~ 131 (132)
+|+.+++++|.+. .+|.. ...|+.|++++|+++ .+|..+..+..+..|.+
T Consensus 403 ~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdL 452 (788)
T PRK15387 403 ELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL 452 (788)
T ss_pred CCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEEC
Confidence 4555555555554 34432 234666777777777 67877777776666543
No 36
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.06 E-value=1e-05 Score=62.91 Aligned_cols=38 Identities=29% Similarity=0.684 Sum_probs=21.5
Q ss_pred CCcEEEcccccccccCCcccCCCCCCCEEEccCccccccCch
Q 045673 77 KLISLGLFNNQLSGAIPASIGNLRSLKFMRLNNNNLTGRIPR 118 (132)
Q Consensus 77 ~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~l~~n~~~~~~p~ 118 (132)
+|+.+++++|.+. .+|..+. ++|+.|++++|+++ .+|.
T Consensus 263 ~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~ 300 (754)
T PRK15370 263 ALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPA 300 (754)
T ss_pred CCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcc
Confidence 4556666666655 4454332 35666777766666 4443
No 37
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.98 E-value=5.5e-06 Score=41.32 Aligned_cols=35 Identities=40% Similarity=0.620 Sum_probs=15.4
Q ss_pred CcEEEeeeCcceecCCccccCCcCCcEEEccccccc
Q 045673 54 LQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLS 89 (132)
Q Consensus 54 L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~ 89 (132)
|+.|++++|.++ .+++.+..+++|+.+++++|.++
T Consensus 3 L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 3 LEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp -SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred ceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 444444444444 33333444555555555555444
No 38
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.86 E-value=1.5e-06 Score=64.67 Aligned_cols=89 Identities=30% Similarity=0.551 Sum_probs=76.8
Q ss_pred CCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEEc
Q 045673 28 NSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRL 107 (132)
Q Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~l 107 (132)
.++..|+.+.|.+. .+|+.++.+..|+.+.+..|.+. .+|+++..+ .|..+|++.|++. .+|-.|.+|+.|++|.|
T Consensus 166 ~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~L 241 (722)
T KOG0532|consen 166 PTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQL 241 (722)
T ss_pred hhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeee
Confidence 36778899999997 57788999999999999999988 778887744 4889999999999 78999999999999999
Q ss_pred cCccccccCchHHH
Q 045673 108 NNNNLTGRIPREVI 121 (132)
Q Consensus 108 ~~n~~~~~~p~~~~ 121 (132)
.+|.+. ..|+.+-
T Consensus 242 enNPLq-SPPAqIC 254 (722)
T KOG0532|consen 242 ENNPLQ-SPPAQIC 254 (722)
T ss_pred ccCCCC-CChHHHH
Confidence 999998 6666443
No 39
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.86 E-value=1.8e-05 Score=62.62 Aligned_cols=101 Identities=24% Similarity=0.262 Sum_probs=80.4
Q ss_pred CCeEEEEcCCCCccccCccccccCCCCcEEEeeeCc--ceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEE
Q 045673 28 NSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNN--ISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFM 105 (132)
Q Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~--~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l 105 (132)
..++.+.+.+|.+... +... ..+.|..|.+..|. +.......|..++.|+.+|+++|.-.+.+|..++.+-+|++|
T Consensus 523 ~~~rr~s~~~~~~~~~-~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL 600 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHI-AGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL 600 (889)
T ss_pred hheeEEEEeccchhhc-cCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence 3577888888887633 2222 23478888888886 553445557889999999999887666999999999999999
Q ss_pred EccCccccccCchHHHHhccCCceee
Q 045673 106 RLNNNNLTGRIPREVIQLIINGSLRI 131 (132)
Q Consensus 106 ~l~~n~~~~~~p~~~~~l~~~~~L~~ 131 (132)
+++...++ .+|..+..+..+..|++
T Consensus 601 ~L~~t~I~-~LP~~l~~Lk~L~~Lnl 625 (889)
T KOG4658|consen 601 DLSDTGIS-HLPSGLGNLKKLIYLNL 625 (889)
T ss_pred cccCCCcc-ccchHHHHHHhhheecc
Confidence 99999999 89999999988877764
No 40
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.67 E-value=1.1e-05 Score=58.21 Aligned_cols=95 Identities=27% Similarity=0.401 Sum_probs=65.7
Q ss_pred CeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEEcc
Q 045673 29 SVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRLN 108 (132)
Q Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~l~ 108 (132)
+++.|++++|.+.. ++..+..++.|+.|+++.|.+. ..+......+.|+.+++++|.+. .+|........|+.+.++
T Consensus 141 nL~~L~l~~N~i~~-l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~ 217 (394)
T COG4886 141 NLKELDLSDNKIES-LPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLS 217 (394)
T ss_pred hcccccccccchhh-hhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhc
Confidence 68888888888873 4455677888888888888888 55554446677888888888887 667655555557777777
Q ss_pred CccccccCchHHHHhccCC
Q 045673 109 NNNLTGRIPREVIQLIING 127 (132)
Q Consensus 109 ~n~~~~~~p~~~~~l~~~~ 127 (132)
+|.+. ..+..+..+..+.
T Consensus 218 ~N~~~-~~~~~~~~~~~l~ 235 (394)
T COG4886 218 NNSII-ELLSSLSNLKNLS 235 (394)
T ss_pred CCcce-ecchhhhhccccc
Confidence 77544 3444455544433
No 41
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=97.57 E-value=5.7e-05 Score=37.38 Aligned_cols=24 Identities=50% Similarity=1.297 Sum_probs=15.8
Q ss_pred CCCCCCCCCCCC-CCCCCceeeeeC
Q 045673 2 PNNVLQSWDPTL-VNPCTWFHVTCN 25 (132)
Q Consensus 2 ~~~~~~~~~~~~-~~~c~~~~~~~~ 25 (132)
|..++.+|+... .++|.|.||+|.
T Consensus 19 ~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 19 PSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp C-CCCTT--TT--S-CCCSTTEEE-
T ss_pred cCcccccCCCcCCCCCeeeccEEeC
Confidence 456799998763 799999999994
No 42
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=1.4e-05 Score=57.90 Aligned_cols=85 Identities=21% Similarity=0.285 Sum_probs=44.9
Q ss_pred CCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCC--ccccCCcCCcEEEcccccccc-cCCcc-----cCCC
Q 045673 28 NSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIP--SEIGNLKKLISLGLFNNQLSG-AIPAS-----IGNL 99 (132)
Q Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~--~~~~~l~~L~~l~ls~n~~~~-~~p~~-----l~~l 99 (132)
+.+..|++.+|........+..-+..|+.|++++|.+- ..+ ..+..++.|..++++.+.+.. ..|.. ...+
T Consensus 222 Psl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f 300 (505)
T KOG3207|consen 222 PSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTF 300 (505)
T ss_pred CcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccchhhhccc
Confidence 44555555555311111122223556666666666654 222 233455666666666666542 12222 2456
Q ss_pred CCCCEEEccCcccc
Q 045673 100 RSLKFMRLNNNNLT 113 (132)
Q Consensus 100 ~~L~~l~l~~n~~~ 113 (132)
++|++|++..|++.
T Consensus 301 ~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 301 PKLEYLNISENNIR 314 (505)
T ss_pred ccceeeecccCccc
Confidence 78888888888886
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.38 E-value=9e-05 Score=54.11 Aligned_cols=82 Identities=29% Similarity=0.328 Sum_probs=60.7
Q ss_pred CCCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEE
Q 045673 27 ENSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMR 106 (132)
Q Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~ 106 (132)
..+++.|++.+|.+.... ..+..+..|+.+++++|.|+... .+..+..|+.+++++|.+. .+ ..+..++.|+.++
T Consensus 94 ~~~l~~l~l~~n~i~~i~-~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~-~~-~~~~~l~~L~~l~ 168 (414)
T KOG0531|consen 94 LKSLEALDLYDNKIEKIE-NLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLIS-DI-SGLESLKSLKLLD 168 (414)
T ss_pred ccceeeeeccccchhhcc-cchhhhhcchheecccccccccc--chhhccchhhheeccCcch-hc-cCCccchhhhccc
Confidence 357888888888887532 22567888899999999888332 3456667888888888887 32 3455678888888
Q ss_pred ccCcccc
Q 045673 107 LNNNNLT 113 (132)
Q Consensus 107 l~~n~~~ 113 (132)
++.|.+.
T Consensus 169 l~~n~i~ 175 (414)
T KOG0531|consen 169 LSYNRIV 175 (414)
T ss_pred CCcchhh
Confidence 8888887
No 44
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=6.2e-05 Score=54.63 Aligned_cols=96 Identities=22% Similarity=0.158 Sum_probs=59.8
Q ss_pred CCceeeeeCCCCCeEEEEcCCCCcccc-CccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCC--
Q 045673 17 CTWFHVTCNSENSVIRVDLGNAGLSGP-LVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIP-- 93 (132)
Q Consensus 17 c~~~~~~~~~~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p-- 93 (132)
|.|....-....+++.|.++.++++.. +......++.++.|++..|..-........-++.|+.|+|++|.+. ..+
T Consensus 186 ~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~ 264 (505)
T KOG3207|consen 186 NFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQG 264 (505)
T ss_pred CCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccc
Confidence 334443333446778888888887632 2333445777888888887422233333344567788888887776 344
Q ss_pred cccCCCCCCCEEEccCcccc
Q 045673 94 ASIGNLRSLKFMRLNNNNLT 113 (132)
Q Consensus 94 ~~l~~l~~L~~l~l~~n~~~ 113 (132)
...+.++.|+.|+++.+.+.
T Consensus 265 ~~~~~l~~L~~Lnls~tgi~ 284 (505)
T KOG3207|consen 265 YKVGTLPGLNQLNLSSTGIA 284 (505)
T ss_pred cccccccchhhhhccccCcc
Confidence 35667778888887777776
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.29 E-value=1.3e-05 Score=61.54 Aligned_cols=81 Identities=27% Similarity=0.247 Sum_probs=47.2
Q ss_pred CeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEEcc
Q 045673 29 SVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRLN 108 (132)
Q Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~l~ 108 (132)
.++.|+++.|.+... ..+..+++|++||++.|.+. ..|.--..--.|.-+.+.+|.++. -..+.++.+|+.||++
T Consensus 188 ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~t--L~gie~LksL~~LDls 262 (1096)
T KOG1859|consen 188 ALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALTT--LRGIENLKSLYGLDLS 262 (1096)
T ss_pred Hhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhhheeeeecccHHHh--hhhHHhhhhhhccchh
Confidence 456666666666532 14555666666666666665 333222211236666666666652 1345667777788888
Q ss_pred Cccccc
Q 045673 109 NNNLTG 114 (132)
Q Consensus 109 ~n~~~~ 114 (132)
.|-+++
T Consensus 263 yNll~~ 268 (1096)
T KOG1859|consen 263 YNLLSE 268 (1096)
T ss_pred Hhhhhc
Confidence 887774
No 46
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.29 E-value=0.00042 Score=45.74 Aligned_cols=82 Identities=23% Similarity=0.272 Sum_probs=63.6
Q ss_pred CeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCC--cccCCCCCCCEEE
Q 045673 29 SVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIP--ASIGNLRSLKFMR 106 (132)
Q Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p--~~l~~l~~L~~l~ 106 (132)
....+++++|.+-. .+.|..++.|+.|.+.+|.|+.+.|.--..++++..+.+.+|.+. .+. ..+..++.|++|.
T Consensus 43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCccceee
Confidence 45678899998863 245778999999999999999665555556788999999999886 322 2466788999999
Q ss_pred ccCcccc
Q 045673 107 LNNNNLT 113 (132)
Q Consensus 107 l~~n~~~ 113 (132)
+-.|+++
T Consensus 120 ll~Npv~ 126 (233)
T KOG1644|consen 120 LLGNPVE 126 (233)
T ss_pred ecCCchh
Confidence 9899887
No 47
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.25 E-value=0.00059 Score=45.07 Aligned_cols=82 Identities=20% Similarity=0.143 Sum_probs=55.5
Q ss_pred CCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceec-CCccccCCcCCcEEEcccccccccCCc----ccCCCCCC
Q 045673 28 NSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGS-IPSEIGNLKKLISLGLFNNQLSGAIPA----SIGNLRSL 102 (132)
Q Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~-~~~~~~~l~~L~~l~ls~n~~~~~~p~----~l~~l~~L 102 (132)
.++..|.+.+|.|+...|.--..++.+..|.+.+|.+... .-..+..++.|+++.+-+|.+. .... .+..+++|
T Consensus 64 ~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~-~k~~YR~yvl~klp~l 142 (233)
T KOG1644|consen 64 PRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVE-HKKNYRLYVLYKLPSL 142 (233)
T ss_pred cccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchh-cccCceeEEEEecCcc
Confidence 4677888888888854443333356688888888887622 1244567778888888888876 3232 46678888
Q ss_pred CEEEccCc
Q 045673 103 KFMRLNNN 110 (132)
Q Consensus 103 ~~l~l~~n 110 (132)
+.||+..-
T Consensus 143 ~~LDF~kV 150 (233)
T KOG1644|consen 143 RTLDFQKV 150 (233)
T ss_pred eEeehhhh
Confidence 88887553
No 48
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.22 E-value=0.00023 Score=48.34 Aligned_cols=85 Identities=22% Similarity=0.271 Sum_probs=61.1
Q ss_pred CCeEEEEcCCCCccccCccccccCCCCcEEEeeeC--cceecCCccccCCcCCcEEEcccccccc-cCCcccCCCCCCCE
Q 045673 28 NSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKN--NISGSIPSEIGNLKKLISLGLFNNQLSG-AIPASIGNLRSLKF 104 (132)
Q Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~--~~~~~~~~~~~~l~~L~~l~ls~n~~~~-~~p~~l~~l~~L~~ 104 (132)
..++.+++.+..++.. ..+..|++|+.|.++.| .+.+..+.-...+++|+++.++.|++.. ..-..+..+.+|..
T Consensus 43 ~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~ 120 (260)
T KOG2739|consen 43 VELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKS 120 (260)
T ss_pred cchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhh
Confidence 4566667777776532 35667899999999999 6665555555566999999999999872 11124566788888
Q ss_pred EEccCccccc
Q 045673 105 MRLNNNNLTG 114 (132)
Q Consensus 105 l~l~~n~~~~ 114 (132)
|++.++..++
T Consensus 121 Ldl~n~~~~~ 130 (260)
T KOG2739|consen 121 LDLFNCSVTN 130 (260)
T ss_pred hhcccCCccc
Confidence 9998887774
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.00 E-value=3.7e-05 Score=59.19 Aligned_cols=94 Identities=26% Similarity=0.334 Sum_probs=67.9
Q ss_pred CeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcc-cCCCCCCCEEEc
Q 045673 29 SVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPAS-IGNLRSLKFMRL 107 (132)
Q Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~-l~~l~~L~~l~l 107 (132)
.+...+++.|.+. .+..++.-++.++.|+++.|.+. ... .+..++.|+++||++|.+. .+|.- ...+. |..|.+
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~-~v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~l 239 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFT-KVD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNL 239 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhh-hhH-HHHhcccccccccccchhc-cccccchhhhh-heeeee
Confidence 4667788888876 56677777889999999999987 332 6788899999999999988 66652 22333 888899
Q ss_pred cCccccccCchHHHHhccCCce
Q 045673 108 NNNNLTGRIPREVIQLIINGSL 129 (132)
Q Consensus 108 ~~n~~~~~~p~~~~~l~~~~~L 129 (132)
.+|.++ ++ ..+-++..+..|
T Consensus 240 rnN~l~-tL-~gie~LksL~~L 259 (1096)
T KOG1859|consen 240 RNNALT-TL-RGIENLKSLYGL 259 (1096)
T ss_pred cccHHH-hh-hhHHhhhhhhcc
Confidence 988887 33 345555554444
No 50
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.75 E-value=0.00089 Score=45.59 Aligned_cols=79 Identities=23% Similarity=0.238 Sum_probs=52.6
Q ss_pred CccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccc--cccccCCcccCCCCCCCEEEccCccccccCchHHH
Q 045673 44 LVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNN--QLSGAIPASIGNLRSLKFMRLNNNNLTGRIPREVI 121 (132)
Q Consensus 44 ~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n--~~~~~~p~~l~~l~~L~~l~l~~n~~~~~~p~~~~ 121 (132)
+.+-.-.+..++.+.+.+..++ .-..++.+++|+.+.++.| .+.+.++--...+++|++++++.|+++ ++..+.
T Consensus 35 ~~gl~d~~~~le~ls~~n~glt--t~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~--~lstl~ 110 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLT--TLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK--DLSTLR 110 (260)
T ss_pred cccccccccchhhhhhhcccee--ecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc--cccccc
Confidence 3333445666777777776666 2235678899999999999 444444444456699999999999998 234444
Q ss_pred HhccC
Q 045673 122 QLIIN 126 (132)
Q Consensus 122 ~l~~~ 126 (132)
.+..+
T Consensus 111 pl~~l 115 (260)
T KOG2739|consen 111 PLKEL 115 (260)
T ss_pred hhhhh
Confidence 44333
No 51
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=96.66 E-value=0.00037 Score=50.94 Aligned_cols=80 Identities=24% Similarity=0.364 Sum_probs=60.3
Q ss_pred eEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEEccC
Q 045673 30 VIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRLNN 109 (132)
Q Consensus 30 l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~l~~ 109 (132)
+..+.+..|.+.. .-..+..+..++.+++..|.+. .....+..+.+|++++++.|.+... ..+..++.|+.|++.+
T Consensus 74 l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~ 149 (414)
T KOG0531|consen 74 LKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSG 149 (414)
T ss_pred HHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccccc--cchhhccchhhheecc
Confidence 3444566666653 2234677899999999999998 4444367789999999999999833 3466777899999999
Q ss_pred cccc
Q 045673 110 NNLT 113 (132)
Q Consensus 110 n~~~ 113 (132)
|.++
T Consensus 150 N~i~ 153 (414)
T KOG0531|consen 150 NLIS 153 (414)
T ss_pred Ccch
Confidence 9998
No 52
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.50 E-value=0.0012 Score=51.28 Aligned_cols=89 Identities=21% Similarity=0.247 Sum_probs=52.5
Q ss_pred eeCCCCCeEEEEcCCCCccccCccccccCCCCcEEEeeeCccee-cCCccccCCcCCcEEEcccccccccCC-------c
Q 045673 23 TCNSENSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISG-SIPSEIGNLKKLISLGLFNNQLSGAIP-------A 94 (132)
Q Consensus 23 ~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~-~~~~~~~~l~~L~~l~ls~n~~~~~~p-------~ 94 (132)
-|...++|..||+++.+++.. ..++.+.+|+.|.+.+=.+.. ..-..+..+.+|+.||+|+.... ..+ +
T Consensus 168 lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~-~~~~ii~qYle 244 (699)
T KOG3665|consen 168 LCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN-DDTKIIEQYLE 244 (699)
T ss_pred HhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccc-cchHHHHHHHH
Confidence 355566777777777776643 345566666666555544331 11234556778888888876544 222 2
Q ss_pred ccCCCCCCCEEEccCccccc
Q 045673 95 SIGNLRSLKFMRLNNNNLTG 114 (132)
Q Consensus 95 ~l~~l~~L~~l~l~~n~~~~ 114 (132)
.-..++.|+.||.+.+.+.+
T Consensus 245 c~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 245 CGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred hcccCccccEEecCCcchhH
Confidence 23357788888887766664
No 53
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.26 E-value=0.00083 Score=47.07 Aligned_cols=85 Identities=27% Similarity=0.232 Sum_probs=52.8
Q ss_pred CeEEEEcCCCCcccc--CccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCc-ccCCCCCCCEE
Q 045673 29 SVIRVDLGNAGLSGP--LVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPA-SIGNLRSLKFM 105 (132)
Q Consensus 29 ~l~~L~l~~n~l~~~--~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~-~l~~l~~L~~l 105 (132)
+++.+++.+|.|+.. +...+..|+.++.|.++.|++...+...-..+.+|+.+-+.+..+.|.... .+..++.++.+
T Consensus 72 ~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtel 151 (418)
T KOG2982|consen 72 DVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTEL 151 (418)
T ss_pred hhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhh
Confidence 577788888888743 334455788888888888887633322112456777777777776654332 34556666666
Q ss_pred EccCcccc
Q 045673 106 RLNNNNLT 113 (132)
Q Consensus 106 ~l~~n~~~ 113 (132)
.++.|++.
T Consensus 152 HmS~N~~r 159 (418)
T KOG2982|consen 152 HMSDNSLR 159 (418)
T ss_pred hhccchhh
Confidence 66666433
No 54
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.22 E-value=0.00097 Score=27.94 Aligned_cols=17 Identities=47% Similarity=0.854 Sum_probs=8.0
Q ss_pred CCEEEccCccccccCchH
Q 045673 102 LKFMRLNNNNLTGRIPRE 119 (132)
Q Consensus 102 L~~l~l~~n~~~~~~p~~ 119 (132)
|++|++++|+++ .+|..
T Consensus 2 L~~Ldls~n~l~-~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSS 18 (22)
T ss_dssp ESEEEETSSEES-EEGTT
T ss_pred ccEEECCCCcCE-eCChh
Confidence 344555555554 44443
No 55
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.93 E-value=0.00015 Score=48.95 Aligned_cols=85 Identities=22% Similarity=0.231 Sum_probs=72.2
Q ss_pred CCCCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEE
Q 045673 26 SENSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFM 105 (132)
Q Consensus 26 ~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l 105 (132)
+..+++.||++.|++-. ....|..++.+..|+++.|++. ..|..+..+..+..+++-.|+++ ..|..++..+.++++
T Consensus 40 ~~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKN 116 (326)
T ss_pred ccceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchh
Confidence 45688999999999763 3456777889999999999998 88888888888888888888887 889999999999999
Q ss_pred EccCcccc
Q 045673 106 RLNNNNLT 113 (132)
Q Consensus 106 ~l~~n~~~ 113 (132)
++..|.+.
T Consensus 117 e~k~~~~~ 124 (326)
T KOG0473|consen 117 EQKKTEFF 124 (326)
T ss_pred hhccCcch
Confidence 99988876
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=95.89 E-value=0.002 Score=50.15 Aligned_cols=84 Identities=20% Similarity=0.262 Sum_probs=36.0
Q ss_pred CCCeEEEEcCCCCcccc-CccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCC--cccCCCCCCC
Q 045673 27 ENSVIRVDLGNAGLSGP-LVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIP--ASIGNLRSLK 103 (132)
Q Consensus 27 ~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p--~~l~~l~~L~ 103 (132)
.+.|++|.+.+-.+... .-.-...++.|..||+++..++.. ..+..+.+|+.|.+.+=.+. ... ..+..++.|+
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e-~~~~l~~LF~L~~L~ 223 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFE-SYQDLIDLFNLKKLR 223 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCC-chhhHHHHhcccCCC
Confidence 34455555555444321 111222355555555555555422 23334444444332222222 111 1345566666
Q ss_pred EEEccCcccc
Q 045673 104 FMRLNNNNLT 113 (132)
Q Consensus 104 ~l~l~~n~~~ 113 (132)
+||++.....
T Consensus 224 vLDIS~~~~~ 233 (699)
T KOG3665|consen 224 VLDISRDKNN 233 (699)
T ss_pred eeeccccccc
Confidence 6666655444
No 57
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=95.86 E-value=0.0094 Score=25.79 Aligned_cols=22 Identities=32% Similarity=0.570 Sum_probs=15.9
Q ss_pred CCCCCEEEccCccccccCchHHH
Q 045673 99 LRSLKFMRLNNNNLTGRIPREVI 121 (132)
Q Consensus 99 l~~L~~l~l~~n~~~~~~p~~~~ 121 (132)
+++|+.|++++|+++ .+|...+
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHc
Confidence 456788888888888 6776544
No 58
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=95.86 E-value=0.0094 Score=25.79 Aligned_cols=22 Identities=32% Similarity=0.570 Sum_probs=15.9
Q ss_pred CCCCCEEEccCccccccCchHHH
Q 045673 99 LRSLKFMRLNNNNLTGRIPREVI 121 (132)
Q Consensus 99 l~~L~~l~l~~n~~~~~~p~~~~ 121 (132)
+++|+.|++++|+++ .+|...+
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHc
Confidence 456788888888888 6776544
No 59
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.75 E-value=0.0003 Score=48.77 Aligned_cols=81 Identities=25% Similarity=0.280 Sum_probs=35.8
Q ss_pred CeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCc--ccCCCCCCCEEE
Q 045673 29 SVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPA--SIGNLRSLKFMR 106 (132)
Q Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~--~l~~l~~L~~l~ 106 (132)
.+++|.+-|+.++.. ....+|+.|++|.++-|.|+... .+..+++|++++|..|.|. .+.+ .+.++++|+.|-
T Consensus 20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHh
Confidence 344444445544421 12224555555555555554221 2334445555555555544 2221 244455555555
Q ss_pred ccCccccc
Q 045673 107 LNNNNLTG 114 (132)
Q Consensus 107 l~~n~~~~ 114 (132)
|..|...|
T Consensus 95 L~ENPCc~ 102 (388)
T KOG2123|consen 95 LDENPCCG 102 (388)
T ss_pred hccCCccc
Confidence 55554443
No 60
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.55 E-value=0.0079 Score=23.48 Aligned_cols=13 Identities=46% Similarity=0.697 Sum_probs=5.9
Q ss_pred CCCEEEccCcccc
Q 045673 101 SLKFMRLNNNNLT 113 (132)
Q Consensus 101 ~L~~l~l~~n~~~ 113 (132)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4556666666655
No 61
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=95.18 E-value=0.014 Score=41.70 Aligned_cols=38 Identities=16% Similarity=0.227 Sum_probs=24.2
Q ss_pred CCeEEEEcCCCCccccCccc----cccCCCCcEEEeeeCcce
Q 045673 28 NSVIRVDLGNAGLSGPLVPQ----LGLLTNLQYLSVYKNNIS 65 (132)
Q Consensus 28 ~~l~~L~l~~n~l~~~~~~~----~~~l~~L~~l~l~~~~~~ 65 (132)
++++.|+|+.|-+....+.. +.+...|++|++.+|.+.
T Consensus 92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg 133 (382)
T KOG1909|consen 92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLG 133 (382)
T ss_pred CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCC
Confidence 47888888888876333222 334566777777776655
No 62
>PRK15386 type III secretion protein GogB; Provisional
Probab=94.63 E-value=0.1 Score=38.41 Aligned_cols=13 Identities=8% Similarity=0.176 Sum_probs=6.4
Q ss_pred CeEEEEcCCCCcc
Q 045673 29 SVIRVDLGNAGLS 41 (132)
Q Consensus 29 ~l~~L~l~~n~l~ 41 (132)
.++.|+++++.+.
T Consensus 53 ~l~~L~Is~c~L~ 65 (426)
T PRK15386 53 ASGRLYIKDCDIE 65 (426)
T ss_pred CCCEEEeCCCCCc
Confidence 3445555555444
No 63
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.34 E-value=0.0017 Score=45.20 Aligned_cols=75 Identities=25% Similarity=0.241 Sum_probs=54.6
Q ss_pred CCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEEccCccccccCchHHHHhccCCcee
Q 045673 51 LTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRLNNNNLTGRIPREVIQLIINGSLR 130 (132)
Q Consensus 51 l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~l~~n~~~~~~p~~~~~l~~~~~L~ 130 (132)
+....+|..=+|.++.+ .....++.|+.+.|+-|+|+.. ..+..++.|+.|+|..|.|. .+ +++..+..+..|+
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~-sl-dEL~YLknlpsLr 91 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIE-SL-DELEYLKNLPSLR 91 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccc-cH-HHHHHHhcCchhh
Confidence 45556666666666622 2345789999999999999832 44778999999999999998 44 6677766666655
Q ss_pred e
Q 045673 131 I 131 (132)
Q Consensus 131 ~ 131 (132)
.
T Consensus 92 ~ 92 (388)
T KOG2123|consen 92 T 92 (388)
T ss_pred h
Confidence 3
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.29 E-value=0.14 Score=30.77 Aligned_cols=53 Identities=11% Similarity=0.120 Sum_probs=18.7
Q ss_pred eEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcc
Q 045673 30 VIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLF 84 (132)
Q Consensus 30 l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls 84 (132)
++.+.+..+ +.......|..+..++.+.+.. .+.......+..+..++.+.+.
T Consensus 37 l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 37 LKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIP 89 (129)
T ss_dssp -SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEET
T ss_pred ccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccC
Confidence 444444442 3322223344444455555433 2221223333444455555543
No 65
>PRK15386 type III secretion protein GogB; Provisional
Probab=94.26 E-value=0.17 Score=37.36 Aligned_cols=51 Identities=22% Similarity=0.304 Sum_probs=28.9
Q ss_pred CCeEEEEcCCCCccccCccccccCCCCcEEEeeeC-cceecCCccccCCcCCcEEEccccc
Q 045673 28 NSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKN-NISGSIPSEIGNLKKLISLGLFNNQ 87 (132)
Q Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~-~~~~~~~~~~~~l~~L~~l~ls~n~ 87 (132)
.+|+.|.+.++.--..+|..+ ...|+.|.+.+| .+. .+| .+|+.+++..+.
T Consensus 72 ~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP------~sLe~L~L~~n~ 123 (426)
T PRK15386 72 NELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLP------ESVRSLEIKGSA 123 (426)
T ss_pred CCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-ccc------cccceEEeCCCC
Confidence 457888887743222344433 356788888777 343 333 345666665544
No 66
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.03 E-value=0.11 Score=36.47 Aligned_cols=62 Identities=18% Similarity=0.190 Sum_probs=34.1
Q ss_pred CCeEEEEcCCCCccccCccc----cccCCCCcEEEeeeCcceecCCcc-------------ccCCcCCcEEEccccccc
Q 045673 28 NSVIRVDLGNAGLSGPLVPQ----LGLLTNLQYLSVYKNNISGSIPSE-------------IGNLKKLISLGLFNNQLS 89 (132)
Q Consensus 28 ~~l~~L~l~~n~l~~~~~~~----~~~l~~L~~l~l~~~~~~~~~~~~-------------~~~l~~L~~l~ls~n~~~ 89 (132)
++++.++++.|-+....|+. +++-..+.+|.+++|.+..+.-.. ...-+.|+.+...+|++.
T Consensus 92 p~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle 170 (388)
T COG5238 92 PRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE 170 (388)
T ss_pred CcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc
Confidence 35667777777766544433 334466667777776655332211 223355666666666654
No 67
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=93.15 E-value=0.071 Score=38.22 Aligned_cols=41 Identities=20% Similarity=0.227 Sum_probs=17.7
Q ss_pred cccCCCCcEEEeeeCcceec----CCccccCCcCCcEEEcccccc
Q 045673 48 LGLLTNLQYLSVYKNNISGS----IPSEIGNLKKLISLGLFNNQL 88 (132)
Q Consensus 48 ~~~l~~L~~l~l~~~~~~~~----~~~~~~~l~~L~~l~ls~n~~ 88 (132)
+..+++|++|++..|.++.. ....++.+++|+.++++++.+
T Consensus 209 l~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll 253 (382)
T KOG1909|consen 209 LEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLL 253 (382)
T ss_pred HHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccc
Confidence 33445555555555544321 112233344444554444444
No 68
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.08 E-value=0.00062 Score=46.12 Aligned_cols=81 Identities=16% Similarity=0.215 Sum_probs=66.1
Q ss_pred cccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEEccCccccccCchHHHHhcc
Q 045673 46 PQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRLNNNNLTGRIPREVIQLII 125 (132)
Q Consensus 46 ~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~l~~n~~~~~~p~~~~~l~~ 125 (132)
-++..+...+.||++.|++. ..-..+.-++.+..++++.|.+. ..|..++....+..+++.+|+.+ ..|.++++.++
T Consensus 36 ~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~ 112 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPH 112 (326)
T ss_pred hhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCC
Confidence 34567788889999999876 45555667788899999999998 78999998888899999999998 78888888776
Q ss_pred CCce
Q 045673 126 NGSL 129 (132)
Q Consensus 126 ~~~L 129 (132)
.+.+
T Consensus 113 ~k~~ 116 (326)
T KOG0473|consen 113 PKKN 116 (326)
T ss_pred cchh
Confidence 6543
No 69
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=92.55 E-value=0.052 Score=22.90 Aligned_cols=15 Identities=33% Similarity=0.536 Sum_probs=8.7
Q ss_pred CCCCEEEccCccccc
Q 045673 100 RSLKFMRLNNNNLTG 114 (132)
Q Consensus 100 ~~L~~l~l~~n~~~~ 114 (132)
++|+.|++++|++++
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 566777777777663
No 70
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=90.85 E-value=0.95 Score=27.05 Aligned_cols=79 Identities=18% Similarity=0.163 Sum_probs=47.9
Q ss_pred CeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEEcc
Q 045673 29 SVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRLN 108 (132)
Q Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~l~ 108 (132)
+++.+.+.. .+.......|..+..++.+.+..+ +.......+..+.+++.+.+.. .+...-...+..++.++.+.+.
T Consensus 13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIP 89 (129)
T ss_dssp T--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEET
T ss_pred CCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccC
Confidence 678888875 455455567888889999999875 6545666777887899999865 4332323467778899999886
Q ss_pred Cc
Q 045673 109 NN 110 (132)
Q Consensus 109 ~n 110 (132)
.+
T Consensus 90 ~~ 91 (129)
T PF13306_consen 90 SN 91 (129)
T ss_dssp TT
T ss_pred cc
Confidence 65
No 71
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=90.27 E-value=0.19 Score=21.92 Aligned_cols=18 Identities=44% Similarity=0.663 Sum_probs=13.6
Q ss_pred CCCCEEEccCccccccCch
Q 045673 100 RSLKFMRLNNNNLTGRIPR 118 (132)
Q Consensus 100 ~~L~~l~l~~n~~~~~~p~ 118 (132)
.+|+.|++++|+++ .+|+
T Consensus 2 ~~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPE 19 (26)
T ss_pred cccceeecCCCccc-cCcc
Confidence 35778888888888 6775
No 72
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=88.57 E-value=0.79 Score=32.31 Aligned_cols=66 Identities=23% Similarity=0.266 Sum_probs=42.7
Q ss_pred cccCCCCcEEEeeeCcceecCCccc----cCCcCCcEEEcccccccccCCc-------------ccCCCCCCCEEEccCc
Q 045673 48 LGLLTNLQYLSVYKNNISGSIPSEI----GNLKKLISLGLFNNQLSGAIPA-------------SIGNLRSLKFMRLNNN 110 (132)
Q Consensus 48 ~~~l~~L~~l~l~~~~~~~~~~~~~----~~l~~L~~l~ls~n~~~~~~p~-------------~l~~l~~L~~l~l~~n 110 (132)
+.++++|+.++++.|.+....|+.+ ..-+.|.++.+++|.+...--. ....-+.|+.....+|
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN 167 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence 4566888888888888876666543 4456788888888876521111 1223467777777777
Q ss_pred ccc
Q 045673 111 NLT 113 (132)
Q Consensus 111 ~~~ 113 (132)
.+.
T Consensus 168 Rle 170 (388)
T COG5238 168 RLE 170 (388)
T ss_pred hhc
Confidence 776
No 73
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.06 E-value=0.042 Score=36.50 Aligned_cols=84 Identities=17% Similarity=0.142 Sum_probs=54.3
Q ss_pred CCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcc-eecCCcccc-CCcCCcEEEccccc-ccccCCcccCCCCCCCE
Q 045673 28 NSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNI-SGSIPSEIG-NLKKLISLGLFNNQ-LSGAIPASIGNLRSLKF 104 (132)
Q Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~-~~~~~~~~~-~l~~L~~l~ls~n~-~~~~~p~~l~~l~~L~~ 104 (132)
-.++.++-++..|...--..+..+..++.+.+.+|.- ....-+.+. -.++|+.|++++|. |+..--..+.++++|+.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 3577888888887654445677788888888888763 322223332 34789999998654 55322235667777777
Q ss_pred EEccCcc
Q 045673 105 MRLNNNN 111 (132)
Q Consensus 105 l~l~~n~ 111 (132)
|.+..-.
T Consensus 181 L~l~~l~ 187 (221)
T KOG3864|consen 181 LHLYDLP 187 (221)
T ss_pred HHhcCch
Confidence 7776543
No 74
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.58 E-value=0.18 Score=35.85 Aligned_cols=77 Identities=21% Similarity=0.205 Sum_probs=45.4
Q ss_pred CCCCCCCCCceeeeeC--CCCCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCC-ccccCCcCCcEEEcccc
Q 045673 10 DPTLVNPCTWFHVTCN--SENSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIP-SEIGNLKKLISLGLFNN 86 (132)
Q Consensus 10 ~~~~~~~c~~~~~~~~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~-~~~~~l~~L~~l~ls~n 86 (132)
+.+++..-.|..+.|. ..++++.|.++.|++...+...-..+..++.+-+.+..++.... ..+..++.++.+.++.|
T Consensus 77 DL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 77 DLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred hcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 3345566678887774 56899999999999875433221345667777666665542222 22334444444444444
No 75
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=85.85 E-value=0.74 Score=19.99 Aligned_cols=15 Identities=27% Similarity=0.481 Sum_probs=12.5
Q ss_pred CCCCCEEEccCcccc
Q 045673 99 LRSLKFMRLNNNNLT 113 (132)
Q Consensus 99 l~~L~~l~l~~n~~~ 113 (132)
+++|+.|+++.|.|+
T Consensus 1 L~~L~~L~L~~NkI~ 15 (26)
T smart00365 1 LTNLEELDLSQNKIK 15 (26)
T ss_pred CCccCEEECCCCccc
Confidence 467889999999887
No 76
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=84.91 E-value=0.0096 Score=41.96 Aligned_cols=86 Identities=19% Similarity=0.179 Sum_probs=55.9
Q ss_pred CCeEEEEcCCCCccc-cCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccc-ccccc-CCcccCCCCCCCE
Q 045673 28 NSVIRVDLGNAGLSG-PLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNN-QLSGA-IPASIGNLRSLKF 104 (132)
Q Consensus 28 ~~l~~L~l~~n~l~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n-~~~~~-~p~~l~~l~~L~~ 104 (132)
.+++.||+++..++. .....+..+.+|+.+.+.+++++..+-..++.-..|+.++++++ .++.- ...-+..++.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 457778888888762 23344556788888888888877666566666777888888764 34411 1113556777777
Q ss_pred EEccCcccc
Q 045673 105 MRLNNNNLT 113 (132)
Q Consensus 105 l~l~~n~~~ 113 (132)
|+++.+...
T Consensus 265 LNlsWc~l~ 273 (419)
T KOG2120|consen 265 LNLSWCFLF 273 (419)
T ss_pred cCchHhhcc
Confidence 777666554
No 77
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=80.21 E-value=1.5 Score=19.12 Aligned_cols=14 Identities=43% Similarity=0.543 Sum_probs=12.0
Q ss_pred CCCCEEEccCcccc
Q 045673 100 RSLKFMRLNNNNLT 113 (132)
Q Consensus 100 ~~L~~l~l~~n~~~ 113 (132)
++|+.|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 57889999999887
No 78
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.29 E-value=0.39 Score=32.05 Aligned_cols=78 Identities=17% Similarity=0.122 Sum_probs=48.6
Q ss_pred CCCcEEEeeeCcceecCCccccCCcCCcEEEccccccccc-CCcccC-CCCCCCEEEccCc-cccccCchHHHHhccCCc
Q 045673 52 TNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGA-IPASIG-NLRSLKFMRLNNN-NLTGRIPREVIQLIINGS 128 (132)
Q Consensus 52 ~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~-~p~~l~-~l~~L~~l~l~~n-~~~~~~p~~~~~l~~~~~ 128 (132)
..++.++.+++.|...--+.+..+++++.+.+.++...+. --+.++ ..++|+.|+++.| +|+..--..+..+..++.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 3467888999888767667778888888887776653211 001122 3488999999976 666222234444444443
Q ss_pred e
Q 045673 129 L 129 (132)
Q Consensus 129 L 129 (132)
|
T Consensus 181 L 181 (221)
T KOG3864|consen 181 L 181 (221)
T ss_pred H
Confidence 3
No 79
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=70.01 E-value=1.9 Score=30.84 Aligned_cols=58 Identities=19% Similarity=0.161 Sum_probs=35.1
Q ss_pred cCCCCcEEEeeeCc-ceecCCccccCCcCCcEEEcccccccccCCc---ccCCCCCCCEEEccC
Q 045673 50 LLTNLQYLSVYKNN-ISGSIPSEIGNLKKLISLGLFNNQLSGAIPA---SIGNLRSLKFMRLNN 109 (132)
Q Consensus 50 ~l~~L~~l~l~~~~-~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~---~l~~l~~L~~l~l~~ 109 (132)
..+.+..||+++|- ++...-..+.+++.|+++.++++.- ..|. .+...++|.+|++.+
T Consensus 311 rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g 372 (419)
T KOG2120|consen 311 RCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFG 372 (419)
T ss_pred hCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEecc
Confidence 45777777777764 3333334455667777777776653 2343 355667777777654
No 80
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=40.73 E-value=17 Score=33.51 Aligned_cols=33 Identities=24% Similarity=0.212 Sum_probs=25.6
Q ss_pred EeeeCcceecCCccccCCcCCcEEEcccccccc
Q 045673 58 SVYKNNISGSIPSEIGNLKKLISLGLFNNQLSG 90 (132)
Q Consensus 58 ~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~ 90 (132)
+|++|.|....+..+..+.+|+.++|++|.|..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 467888886666677788899999999888753
No 81
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=37.34 E-value=21 Score=27.72 Aligned_cols=63 Identities=25% Similarity=0.211 Sum_probs=39.1
Q ss_pred CCCCeEEEEcCCCCcccc--CccccccCCCCcEEEeeeC--cceecCCcccc--CCcCCcEEEcccccccc
Q 045673 26 SENSVIRVDLGNAGLSGP--LVPQLGLLTNLQYLSVYKN--NISGSIPSEIG--NLKKLISLGLFNNQLSG 90 (132)
Q Consensus 26 ~~~~l~~L~l~~n~l~~~--~~~~~~~l~~L~~l~l~~~--~~~~~~~~~~~--~l~~L~~l~ls~n~~~~ 90 (132)
+.+.+..+.+++|++... +..--...+++..|++++| .+. ...++. +...|+++.+.+|.+..
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~--~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKIS--SESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhc--chhhhhhhcCCCHHHeeecCCcccc
Confidence 346788899999998632 1122234688888899888 333 122222 23457788888888753
No 82
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=32.64 E-value=34 Score=14.20 Aligned_cols=15 Identities=20% Similarity=0.293 Sum_probs=10.6
Q ss_pred CCCCCEEEccCcc-cc
Q 045673 99 LRSLKFMRLNNNN-LT 113 (132)
Q Consensus 99 l~~L~~l~l~~n~-~~ 113 (132)
++.|+.|+++++. ++
T Consensus 1 c~~L~~L~l~~C~~it 16 (26)
T smart00367 1 CPNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCCEeCCCCCCCcC
Confidence 3678888888863 54
No 83
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=30.24 E-value=40 Score=31.44 Aligned_cols=33 Identities=21% Similarity=0.127 Sum_probs=26.6
Q ss_pred EcCCCCccccCccccccCCCCcEEEeeeCccee
Q 045673 34 DLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISG 66 (132)
Q Consensus 34 ~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~ 66 (132)
+|++|.|....+..|..+..|+.|+|.+|.+..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 478888887666778888889999999888763
No 84
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=28.03 E-value=12 Score=27.51 Aligned_cols=61 Identities=18% Similarity=0.167 Sum_probs=25.8
Q ss_pred CCCCcEEEeeeCc-ceecCCcccc-CCcCCcEEEccccc-cccc-CCcccCCCCCCCEEEccCcc
Q 045673 51 LTNLQYLSVYKNN-ISGSIPSEIG-NLKKLISLGLFNNQ-LSGA-IPASIGNLRSLKFMRLNNNN 111 (132)
Q Consensus 51 l~~L~~l~l~~~~-~~~~~~~~~~-~l~~L~~l~ls~n~-~~~~-~p~~l~~l~~L~~l~l~~n~ 111 (132)
+..++.++++.+. ++...-..+. .+++|+.+.+.++. ++.. +-.....++.|+.|+++.+.
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 3555555555555 3322222222 24556665543333 2210 00112234556666666543
Done!