Query 045673
Match_columns 132
No_of_seqs 108 out of 2079
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 07:09:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045673.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045673hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 99.9 3.8E-21 1.3E-25 133.1 10.8 126 5-131 23-156 (313)
2 4eco_A Uncharacterized protein 99.8 3.6E-19 1.2E-23 133.3 9.1 124 6-131 57-280 (636)
3 3rgz_A Protein brassinosteroid 99.8 3.1E-18 1E-22 130.6 9.1 127 1-130 26-184 (768)
4 4ecn_A Leucine-rich repeat pro 99.7 6.7E-18 2.3E-22 130.2 9.3 124 8-131 285-522 (876)
5 3e6j_A Variable lymphocyte rec 99.7 5E-17 1.7E-21 107.9 9.8 118 13-131 15-142 (229)
6 1w8a_A SLIT protein; signaling 99.7 1E-16 3.4E-21 103.9 8.2 118 14-131 5-133 (192)
7 2o6r_A Variable lymphocyte rec 99.7 7.2E-16 2.5E-20 98.4 8.8 117 14-131 4-131 (177)
8 2v9t_B SLIT homolog 2 protein 99.6 6.1E-16 2.1E-20 102.2 8.6 116 14-130 8-134 (220)
9 2o6s_A Variable lymphocyte rec 99.6 7.2E-16 2.4E-20 100.7 8.8 118 14-131 4-131 (208)
10 4fcg_A Uncharacterized protein 99.6 6.6E-17 2.2E-21 112.6 2.7 113 6-121 47-171 (328)
11 2wfh_A SLIT homolog 2 protein 99.6 2.9E-15 1E-19 97.1 9.3 117 14-131 7-133 (193)
12 2v70_A SLIT-2, SLIT homolog 2 99.6 3.6E-15 1.2E-19 98.5 8.1 101 30-130 59-159 (220)
13 2v70_A SLIT-2, SLIT homolog 2 99.6 3.1E-15 1E-19 98.8 7.7 118 14-131 8-136 (220)
14 2v9t_B SLIT homolog 2 protein 99.6 1.2E-14 4E-19 96.0 8.2 105 27-131 55-159 (220)
15 1ogq_A PGIP-2, polygalacturona 99.6 6E-15 2E-19 102.0 6.9 104 28-131 76-181 (313)
16 3g39_A Variable lymphocyte rec 99.5 3.3E-14 1.1E-18 90.4 9.1 102 15-116 7-118 (170)
17 2o6q_A Variable lymphocyte rec 99.5 1.3E-14 4.5E-19 98.2 7.6 102 29-130 38-139 (270)
18 3m19_A Variable lymphocyte rec 99.5 4.1E-14 1.4E-18 94.9 8.7 102 29-130 60-161 (251)
19 4g8a_A TOLL-like receptor 4; l 99.5 1.8E-14 6E-19 106.8 7.2 103 29-131 53-155 (635)
20 2xot_A Amphoterin-induced prot 99.5 3.7E-14 1.3E-18 99.7 8.0 117 14-130 15-142 (361)
21 3rgz_A Protein brassinosteroid 99.5 1.9E-14 6.6E-19 109.7 7.0 91 28-118 632-722 (768)
22 3e6j_A Variable lymphocyte rec 99.5 5.4E-14 1.8E-18 93.3 8.2 104 27-131 63-166 (229)
23 4fcg_A Uncharacterized protein 99.5 6.1E-14 2.1E-18 97.6 8.5 102 28-130 206-307 (328)
24 3m19_A Variable lymphocyte rec 99.5 8E-14 2.7E-18 93.4 8.3 103 28-130 83-185 (251)
25 2z81_A CD282 antigen, TOLL-lik 99.5 2.3E-14 7.9E-19 105.1 6.1 104 28-131 26-130 (549)
26 2r9u_A Variable lymphocyte rec 99.5 2.4E-13 8.1E-18 86.8 9.7 103 15-118 10-122 (174)
27 2o6s_A Variable lymphocyte rec 99.5 1.4E-13 4.7E-18 89.8 8.4 105 27-131 51-155 (208)
28 1w8a_A SLIT protein; signaling 99.5 1.5E-13 5.2E-18 88.9 8.2 91 27-117 53-143 (192)
29 3rfs_A Internalin B, repeat mo 99.5 2.5E-13 8.5E-18 92.1 8.6 103 28-130 109-211 (272)
30 2ell_A Acidic leucine-rich nuc 99.5 1.1E-13 3.9E-18 87.4 6.2 100 28-130 49-153 (168)
31 3rfs_A Internalin B, repeat mo 99.5 2.9E-13 9.9E-18 91.7 8.3 105 27-131 84-188 (272)
32 3a79_B TLR6, VLRB.59, TOLL-lik 99.4 4.6E-13 1.6E-17 98.8 9.7 101 28-131 52-153 (562)
33 2id5_A Lingo-1, leucine rich r 99.4 2.3E-13 7.9E-18 98.5 7.9 103 29-131 33-135 (477)
34 1ozn_A Reticulon 4 receptor; N 99.4 3.7E-13 1.3E-17 91.6 8.3 101 29-129 33-134 (285)
35 2z80_A TOLL-like receptor 2, v 99.4 1.2E-13 4.2E-18 96.6 6.0 115 14-131 27-156 (353)
36 2je0_A Acidic leucine-rich nuc 99.4 7.6E-14 2.6E-18 86.6 4.4 103 27-131 41-147 (149)
37 1ozn_A Reticulon 4 receptor; N 99.4 5E-13 1.7E-17 90.9 8.8 103 28-130 129-231 (285)
38 2xot_A Amphoterin-induced prot 99.4 5.5E-13 1.9E-17 93.8 9.1 93 27-120 63-155 (361)
39 3zyi_A Leucine-rich repeat-con 99.4 3.3E-13 1.1E-17 97.3 8.1 104 28-131 75-178 (452)
40 3g39_A Variable lymphocyte rec 99.4 4.9E-13 1.7E-17 85.0 7.8 99 30-131 11-109 (170)
41 3vq2_A TLR4, TOLL-like recepto 99.4 2.9E-13 9.8E-18 100.4 7.6 102 29-130 57-159 (606)
42 1p9a_G Platelet glycoprotein I 99.4 5.1E-13 1.7E-17 91.5 8.3 99 29-129 101-200 (290)
43 4g8a_A TOLL-like receptor 4; l 99.4 4.6E-13 1.6E-17 99.2 8.6 104 28-131 76-180 (635)
44 3v47_A TOLL-like receptor 5B a 99.4 3.9E-13 1.3E-17 96.6 7.9 104 28-131 299-402 (455)
45 2je0_A Acidic leucine-rich nuc 99.4 1.6E-13 5.5E-18 85.1 5.0 102 28-131 17-120 (149)
46 2z7x_B TOLL-like receptor 1, v 99.4 4E-13 1.4E-17 98.1 7.9 101 28-131 21-122 (520)
47 2ft3_A Biglycan; proteoglycan, 99.4 6E-13 2E-17 92.4 8.3 114 15-131 31-154 (332)
48 3vq2_A TLR4, TOLL-like recepto 99.4 5.8E-13 2E-17 98.8 8.6 103 28-130 32-134 (606)
49 3v47_A TOLL-like receptor 5B a 99.4 3.6E-13 1.2E-17 96.8 7.1 104 28-131 275-378 (455)
50 2z62_A TOLL-like receptor 4, v 99.4 8.6E-13 3E-17 89.4 8.5 102 29-130 53-155 (276)
51 2o6q_A Variable lymphocyte rec 99.4 1.1E-12 3.6E-17 88.8 8.7 86 28-113 61-146 (270)
52 3zyj_A Leucine-rich repeat-con 99.4 8E-13 2.7E-17 95.0 8.4 113 19-131 45-167 (440)
53 3j0a_A TOLL-like receptor 5; m 99.4 4.3E-13 1.5E-17 103.3 7.2 114 16-130 13-154 (844)
54 1xku_A Decorin; proteoglycan, 99.4 1.4E-12 4.6E-17 90.5 9.0 113 15-130 29-151 (330)
55 2ell_A Acidic leucine-rich nuc 99.4 4.3E-13 1.5E-17 84.7 5.9 101 28-131 24-127 (168)
56 2r9u_A Variable lymphocyte rec 99.4 1.1E-12 3.9E-17 83.6 7.9 98 31-131 15-112 (174)
57 2z62_A TOLL-like receptor 4, v 99.4 7.9E-13 2.7E-17 89.5 7.2 104 28-131 28-131 (276)
58 4ezg_A Putative uncharacterize 99.4 6.8E-13 2.3E-17 86.0 6.4 99 28-130 88-187 (197)
59 3t6q_A CD180 antigen; protein- 99.4 6.6E-13 2.2E-17 98.5 7.2 104 28-131 33-136 (606)
60 2ifg_A High affinity nerve gro 99.4 2E-12 6.8E-17 90.2 9.0 97 16-114 7-117 (347)
61 2z66_A Variable lymphocyte rec 99.4 1.3E-12 4.6E-17 89.6 7.9 94 29-122 151-245 (306)
62 1p9a_G Platelet glycoprotein I 99.4 1.8E-12 6.3E-17 88.7 8.5 102 28-131 77-179 (290)
63 1a9n_A U2A', U2A'; complex (nu 99.4 5.6E-13 1.9E-17 84.9 5.5 99 28-130 42-146 (176)
64 3oja_A Leucine-rich immune mol 99.4 1.8E-12 6.1E-17 94.6 8.7 114 15-131 107-221 (487)
65 2xwt_C Thyrotropin receptor; s 99.4 9.3E-13 3.2E-17 87.5 6.6 98 28-127 31-130 (239)
66 2id5_A Lingo-1, leucine rich r 99.4 1.3E-12 4.5E-17 94.5 7.5 102 28-129 56-157 (477)
67 3oja_B Anopheles plasmodium-re 99.4 1.6E-12 5.5E-17 96.7 8.0 102 29-131 76-178 (597)
68 1ziw_A TOLL-like receptor 3; i 99.4 1.4E-12 4.7E-17 98.0 7.7 100 29-129 26-126 (680)
69 1dce_A Protein (RAB geranylger 99.4 1.5E-12 5.1E-17 96.6 7.8 99 28-129 463-565 (567)
70 3o6n_A APL1; leucine-rich repe 99.4 2.1E-12 7.1E-17 91.4 7.7 101 29-130 70-171 (390)
71 4b8c_D Glucose-repressible alc 99.4 6.8E-13 2.3E-17 100.9 5.4 99 28-130 224-322 (727)
72 2wfh_A SLIT homolog 2 protein 99.4 3.6E-12 1.2E-16 82.5 8.1 89 27-115 53-141 (193)
73 2z66_A Variable lymphocyte rec 99.3 2.1E-12 7.1E-17 88.6 7.2 101 29-129 127-228 (306)
74 4ezg_A Putative uncharacterize 99.3 3.7E-12 1.3E-16 82.5 8.0 99 28-130 66-165 (197)
75 2z63_A TOLL-like receptor 4, v 99.3 3.5E-12 1.2E-16 93.8 8.7 103 28-130 52-155 (570)
76 3oja_B Anopheles plasmodium-re 99.3 1.9E-12 6.4E-17 96.4 6.6 103 28-131 51-154 (597)
77 2o6r_A Variable lymphocyte rec 99.3 4.4E-12 1.5E-16 80.7 7.3 91 27-117 51-141 (177)
78 3o6n_A APL1; leucine-rich repe 99.3 1.2E-11 4E-16 87.5 10.1 101 27-131 225-325 (390)
79 2z63_A TOLL-like receptor 4, v 99.3 3.3E-12 1.1E-16 93.9 7.4 103 28-130 421-524 (570)
80 4eco_A Uncharacterized protein 99.3 8.7E-13 3E-17 98.9 4.3 114 17-131 193-337 (636)
81 1a9n_A U2A', U2A'; complex (nu 99.3 6.9E-12 2.4E-16 79.8 7.6 99 27-131 18-120 (176)
82 1ziw_A TOLL-like receptor 3; i 99.3 3.3E-12 1.1E-16 96.0 6.6 100 29-128 50-149 (680)
83 1dce_A Protein (RAB geranylger 99.3 6.1E-12 2.1E-16 93.4 7.9 98 29-131 442-540 (567)
84 1wwl_A Monocyte differentiatio 99.3 1.1E-12 3.8E-17 90.5 3.6 84 29-113 122-214 (312)
85 2ifg_A High affinity nerve gro 99.3 7.2E-12 2.5E-16 87.4 7.7 96 32-130 12-109 (347)
86 3o53_A Protein LRIM1, AGAP0063 99.3 1.2E-11 4.2E-16 85.4 8.8 110 17-129 109-219 (317)
87 4b8c_D Glucose-repressible alc 99.3 2E-12 6.8E-17 98.4 4.8 94 27-123 246-339 (727)
88 3t6q_A CD180 antigen; protein- 99.3 1.7E-11 5.8E-16 91.0 9.1 103 28-131 449-554 (606)
89 1xku_A Decorin; proteoglycan, 99.3 1.3E-11 4.5E-16 85.5 7.8 86 28-114 192-277 (330)
90 2xwt_C Thyrotropin receptor; s 99.3 9.1E-12 3.1E-16 82.7 6.5 101 28-130 55-162 (239)
91 3zyi_A Leucine-rich repeat-con 99.3 1.2E-11 4.2E-16 89.1 7.5 102 28-131 196-297 (452)
92 2z80_A TOLL-like receptor 2, v 99.3 5.7E-12 1.9E-16 88.1 5.3 102 28-130 76-180 (353)
93 2z81_A CD282 antigen, TOLL-lik 99.2 6.8E-12 2.3E-16 92.0 5.0 103 28-130 50-154 (549)
94 3zyj_A Leucine-rich repeat-con 99.2 2.8E-11 9.5E-16 87.0 7.9 102 28-129 88-190 (440)
95 4ecn_A Leucine-rich repeat pro 99.2 3.3E-12 1.1E-16 98.8 3.2 114 17-131 435-580 (876)
96 2ft3_A Biglycan; proteoglycan, 99.2 7.8E-12 2.7E-16 86.7 4.4 85 28-113 193-277 (332)
97 3o53_A Protein LRIM1, AGAP0063 99.2 1.6E-11 5.5E-16 84.8 5.7 99 28-130 144-243 (317)
98 4ay9_X Follicle-stimulating ho 99.2 2.7E-11 9.2E-16 84.8 6.8 102 14-115 6-119 (350)
99 3j0a_A TOLL-like receptor 5; m 99.2 3.6E-11 1.2E-15 92.7 7.9 104 28-131 266-369 (844)
100 3oja_A Leucine-rich immune mol 99.2 2.1E-11 7.2E-16 88.9 5.7 101 27-131 143-244 (487)
101 2z7x_B TOLL-like receptor 1, v 99.2 2.7E-11 9.1E-16 88.5 6.2 101 28-131 324-451 (520)
102 1wwl_A Monocyte differentiatio 99.2 1.7E-11 5.7E-16 84.5 4.2 87 27-114 94-187 (312)
103 3a79_B TLR6, VLRB.59, TOLL-lik 99.2 1E-10 3.5E-15 86.3 8.3 98 29-130 404-503 (562)
104 4glp_A Monocyte differentiatio 99.1 4.2E-11 1.4E-15 82.5 4.5 85 29-113 92-182 (310)
105 1h6t_A Internalin B; cell adhe 99.1 1.9E-10 6.6E-15 78.7 7.7 94 29-130 113-206 (291)
106 1xeu_A Internalin C; cellular 99.1 3.1E-10 1E-14 76.6 8.5 94 28-130 63-156 (263)
107 1h6u_A Internalin H; cell adhe 99.1 3.4E-10 1.2E-14 78.0 8.3 80 28-113 63-142 (308)
108 4fmz_A Internalin; leucine ric 99.1 1.4E-10 4.9E-15 80.6 5.9 96 28-129 221-316 (347)
109 1h6u_A Internalin H; cell adhe 99.1 3.9E-10 1.3E-14 77.7 7.8 18 96-113 169-186 (308)
110 4fmz_A Internalin; leucine ric 99.1 4E-10 1.4E-14 78.3 7.7 99 27-131 242-340 (347)
111 1h6t_A Internalin B; cell adhe 99.1 4.8E-10 1.7E-14 76.7 7.9 80 28-113 68-147 (291)
112 4glp_A Monocyte differentiatio 99.1 4E-11 1.4E-15 82.5 2.0 36 29-64 146-181 (310)
113 1m9s_A Internalin B; cell inva 99.0 7.7E-10 2.6E-14 82.7 8.3 95 28-130 109-203 (605)
114 1xeu_A Internalin C; cellular 99.0 1.2E-09 4E-14 73.8 7.7 96 27-131 40-135 (263)
115 1ds9_A Outer arm dynein; leuci 99.0 5E-12 1.7E-16 81.9 -3.9 81 28-113 48-128 (198)
116 1ds9_A Outer arm dynein; leuci 99.0 6.9E-12 2.4E-16 81.2 -3.4 98 29-131 19-122 (198)
117 2ast_B S-phase kinase-associat 99.0 7.1E-11 2.4E-15 81.7 1.0 102 28-130 70-174 (336)
118 1o6v_A Internalin A; bacterial 99.0 1.1E-09 3.8E-14 79.2 7.2 94 28-129 68-161 (466)
119 3cvr_A Invasion plasmid antige 99.0 9.5E-10 3.2E-14 81.7 6.8 89 28-125 160-255 (571)
120 1o6v_A Internalin A; bacterial 99.0 1.1E-09 3.7E-14 79.2 7.0 94 29-130 288-381 (466)
121 1m9s_A Internalin B; cell inva 99.0 1.6E-09 5.6E-14 81.0 8.0 80 28-113 65-144 (605)
122 2ast_B S-phase kinase-associat 99.0 4.3E-11 1.5E-15 82.8 -0.9 104 28-131 93-202 (336)
123 3cvr_A Invasion plasmid antige 99.0 2.2E-09 7.6E-14 79.8 8.0 91 28-131 140-237 (571)
124 3bz5_A Internalin-J, INLJ; leu 98.9 3.3E-09 1.1E-13 76.8 8.1 78 28-113 42-119 (457)
125 3goz_A Leucine-rich repeat-con 98.9 4.4E-10 1.5E-14 78.9 2.4 86 29-114 52-152 (362)
126 3g06_A SSPH2 (leucine-rich rep 98.9 5.1E-09 1.7E-13 78.6 7.0 87 29-124 222-308 (622)
127 2ca6_A RAN GTPase-activating p 98.9 4E-10 1.4E-14 79.6 1.0 103 28-130 187-309 (386)
128 3g06_A SSPH2 (leucine-rich rep 98.8 1.8E-08 6.1E-13 75.7 9.3 71 52-131 221-291 (622)
129 3goz_A Leucine-rich repeat-con 98.8 2.3E-09 7.9E-14 75.2 3.1 104 28-131 22-145 (362)
130 2ca6_A RAN GTPase-activating p 98.8 9.8E-10 3.3E-14 77.6 1.2 104 28-131 159-281 (386)
131 3bz5_A Internalin-J, INLJ; leu 98.8 3.4E-08 1.1E-12 71.6 8.9 77 29-114 171-247 (457)
132 1jl5_A Outer protein YOPM; leu 98.7 1.5E-08 5.2E-13 73.3 5.0 86 29-122 318-420 (454)
133 1jl5_A Outer protein YOPM; leu 98.7 6.4E-08 2.2E-12 70.0 7.9 78 28-113 131-208 (454)
134 4ay9_X Follicle-stimulating ho 98.7 4.2E-08 1.4E-12 68.6 6.3 98 31-131 12-111 (350)
135 3sb4_A Hypothetical leucine ri 98.6 6.7E-08 2.3E-12 66.9 6.3 101 28-130 226-327 (329)
136 1z7x_W Ribonuclease inhibitor; 98.6 2.2E-09 7.6E-14 77.1 -2.0 14 100-113 370-383 (461)
137 1z7x_W Ribonuclease inhibitor; 98.5 8.5E-09 2.9E-13 74.0 -0.7 87 28-114 313-412 (461)
138 3rw6_A Nuclear RNA export fact 98.4 3.3E-07 1.1E-11 62.1 4.6 78 50-129 168-256 (267)
139 3un9_A NLR family member X1; l 98.3 1E-07 3.6E-12 67.3 1.0 62 52-113 155-224 (372)
140 3rw6_A Nuclear RNA export fact 98.3 3E-07 1E-11 62.3 3.2 80 27-107 169-258 (267)
141 3un9_A NLR family member X1; l 98.3 4.6E-08 1.6E-12 69.2 -1.3 97 27-123 154-262 (372)
142 3e4g_A ATP synthase subunit S, 98.1 1.6E-06 5.5E-11 55.2 2.5 86 28-113 61-153 (176)
143 1io0_A Tropomodulin; LRR prote 98.1 7.2E-07 2.4E-11 57.1 0.6 88 27-114 35-137 (185)
144 3ogk_B Coronatine-insensitive 98.0 3.8E-07 1.3E-11 67.4 -1.5 55 75-130 191-249 (592)
145 2p1m_B Transport inhibitor res 97.9 4.7E-06 1.6E-10 61.5 2.9 84 28-111 105-195 (594)
146 3ogk_B Coronatine-insensitive 97.8 1.5E-05 5.2E-10 58.8 4.3 38 93-130 286-324 (592)
147 2p1m_B Transport inhibitor res 97.8 3.3E-06 1.1E-10 62.3 -0.2 84 29-113 433-519 (594)
148 1io0_A Tropomodulin; LRR prote 97.8 2.7E-06 9.2E-11 54.4 -0.7 87 27-113 64-164 (185)
149 3sb4_A Hypothetical leucine ri 97.7 8.9E-05 3E-09 51.2 6.6 78 28-107 250-328 (329)
150 3e4g_A ATP synthase subunit S, 97.5 3.5E-05 1.2E-09 49.0 1.7 81 51-131 60-146 (176)
151 2ra8_A Uncharacterized protein 97.3 5.5E-05 1.9E-09 53.3 1.3 11 28-38 172-182 (362)
152 4fdw_A Leucine rich hypothetic 97.2 0.00074 2.5E-08 48.1 6.1 65 46-113 294-358 (401)
153 4fdw_A Leucine rich hypothetic 97.1 0.0013 4.4E-08 46.9 6.0 64 45-109 264-332 (401)
154 2ra8_A Uncharacterized protein 97.0 0.00092 3.2E-08 47.1 5.1 40 75-114 251-293 (362)
155 3rfe_A Platelet glycoprotein I 96.8 0.0029 1E-07 38.0 5.2 56 32-89 12-68 (130)
156 3rfe_A Platelet glycoprotein I 96.8 0.0028 9.6E-08 38.1 5.0 37 29-65 32-68 (130)
157 1pgv_A TMD-1, tropomodulin TMD 96.1 0.0012 4.2E-08 42.6 0.7 85 26-110 39-136 (197)
158 4h09_A Hypothetical leucine ri 95.8 0.044 1.5E-06 38.2 7.5 36 48-83 282-317 (379)
159 4fs7_A Uncharacterized protein 95.5 0.034 1.2E-06 39.1 6.0 78 29-109 298-375 (394)
160 4h09_A Hypothetical leucine ri 95.3 0.043 1.5E-06 38.3 5.9 99 28-130 240-339 (379)
161 4gt6_A Cell surface protein; l 94.9 0.1 3.5E-06 36.7 6.9 61 48-110 307-367 (394)
162 4gt6_A Cell surface protein; l 94.9 0.19 6.6E-06 35.3 8.3 96 30-130 267-363 (394)
163 1pgv_A TMD-1, tropomodulin TMD 94.1 0.012 4E-07 38.0 0.6 88 26-113 68-170 (197)
164 4fs7_A Uncharacterized protein 93.7 0.15 5E-06 35.9 5.6 80 47-130 292-372 (394)
165 2lz0_A Uncharacterized protein 61.0 19 0.00066 20.0 6.3 49 37-86 5-53 (100)
166 3ox7_P MH027; urokinase-type p 39.2 12 0.0004 14.5 0.8 11 13-23 4-14 (23)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.86 E-value=3.8e-21 Score=133.13 Aligned_cols=126 Identities=30% Similarity=0.558 Sum_probs=110.7
Q ss_pred CCCCCCCCCCCCCC--ceeeeeCCC---CCeEEEEcCCCCccc--cCccccccCCCCcEEEeee-CcceecCCccccCCc
Q 045673 5 VLQSWDPTLVNPCT--WFHVTCNSE---NSVIRVDLGNAGLSG--PLVPQLGLLTNLQYLSVYK-NNISGSIPSEIGNLK 76 (132)
Q Consensus 5 ~~~~~~~~~~~~c~--~~~~~~~~~---~~l~~L~l~~n~l~~--~~~~~~~~l~~L~~l~l~~-~~~~~~~~~~~~~l~ 76 (132)
.+.+|+.. .++|. |.||+|... ++++.|++++|.+.+ .+|..+..++.|+.|++++ |.+.+..|..+..++
T Consensus 23 ~l~~W~~~-~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~ 101 (313)
T 1ogq_A 23 TLSSWLPT-TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT 101 (313)
T ss_dssp GGTTCCTT-SCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCT
T ss_pred cccCCCCC-CCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCC
Confidence 57889764 57888 999999754 799999999999998 7888999999999999995 888888888899999
Q ss_pred CCcEEEcccccccccCCcccCCCCCCCEEEccCccccccCchHHHHhccCCceee
Q 045673 77 KLISLGLFNNQLSGAIPASIGNLRSLKFMRLNNNNLTGRIPREVIQLIINGSLRI 131 (132)
Q Consensus 77 ~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~l~~n~~~~~~p~~~~~l~~~~~L~~ 131 (132)
+|+++++++|.+.+..|..+..+++|++|++++|.+++.+|..+..+..++.|.+
T Consensus 102 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 156 (313)
T 1ogq_A 102 QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF 156 (313)
T ss_dssp TCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEEC
T ss_pred CCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEEC
Confidence 9999999999998788888989999999999999999888888888888877764
No 2
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.79 E-value=3.6e-19 Score=133.31 Aligned_cols=124 Identities=21% Similarity=0.259 Sum_probs=107.3
Q ss_pred CCCCCCCCCCCCCc---eeeeeCCCCCeEEEEcCCCCccccCccccccCCCCcEEEeeeCc-------------------
Q 045673 6 LQSWDPTLVNPCTW---FHVTCNSENSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNN------------------- 63 (132)
Q Consensus 6 ~~~~~~~~~~~c~~---~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~------------------- 63 (132)
..+|+.. .++|.| .||+|...++|+.|+++++.+.|.+|+.+..++.|+.|++++|.
T Consensus 57 ~~~W~~~-~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~ 135 (636)
T 4eco_A 57 GANWNFN-KELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135 (636)
T ss_dssp -CCCCCS-SCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCH
T ss_pred CCCCCCC-CCcccccCCCCeEEcCCCCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchH
Confidence 4579765 699999 99999877999999999999999999999999999999998884
Q ss_pred -----------------------------------------------------------ceecCCccccCCcCCcEEEcc
Q 045673 64 -----------------------------------------------------------ISGSIPSEIGNLKKLISLGLF 84 (132)
Q Consensus 64 -----------------------------------------------------------~~~~~~~~~~~l~~L~~l~ls 84 (132)
+++ +|..+..+++|+.++++
T Consensus 136 ~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls 214 (636)
T 4eco_A 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMG 214 (636)
T ss_dssp HHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEE
T ss_pred HHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECc
Confidence 334 67778888999999999
Q ss_pred ccccccc-----------------CCcccC--CCCCCCEEEccCccccccCchHHHHhccCCceee
Q 045673 85 NNQLSGA-----------------IPASIG--NLRSLKFMRLNNNNLTGRIPREVIQLIINGSLRI 131 (132)
Q Consensus 85 ~n~~~~~-----------------~p~~l~--~l~~L~~l~l~~n~~~~~~p~~~~~l~~~~~L~~ 131 (132)
+|.+.+. +|..++ .+++|++|++++|.+.+.+|+.++.+..++.|.+
T Consensus 215 ~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 280 (636)
T 4eco_A 215 NSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINV 280 (636)
T ss_dssp SCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEEC
T ss_pred CCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEEC
Confidence 9999864 888888 8999999999999998889988888888887764
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.75 E-value=3.1e-18 Score=130.58 Aligned_cols=127 Identities=26% Similarity=0.341 Sum_probs=100.5
Q ss_pred CCCCCCCCCCCCCCCCCCceeeeeCCCCCeEEEEcCCCCcccc---Cc-----------------------cccccCCCC
Q 045673 1 DPNNVLQSWDPTLVNPCTWFHVTCNSENSVIRVDLGNAGLSGP---LV-----------------------PQLGLLTNL 54 (132)
Q Consensus 1 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~~l~~L~l~~n~l~~~---~~-----------------------~~~~~l~~L 54 (132)
||. ++.+|+ .+.++|.|.||+|. .++|+.|+++++.+.+. ++ ..+..+.+|
T Consensus 26 ~~~-~l~~W~-~~~~~C~w~gv~C~-~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L 102 (768)
T 3rgz_A 26 DKN-LLPDWS-SNKNPCTFDGVTCR-DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASL 102 (768)
T ss_dssp CTT-SSTTCC-TTSCGGGSTTEEEE-TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTC
T ss_pred Ccc-cccCCC-CCCCCcCCcceEEC-CCcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCCCchhhccCCCC
Confidence 455 789997 44689999999998 78999999999998765 33 467778889
Q ss_pred cEEEeeeCcceecCCc--cccCCcCCcEEEcccccccccCCccc-CCCCCCCEEEccCccccccCchH---HHHhccCCc
Q 045673 55 QYLSVYKNNISGSIPS--EIGNLKKLISLGLFNNQLSGAIPASI-GNLRSLKFMRLNNNNLTGRIPRE---VIQLIINGS 128 (132)
Q Consensus 55 ~~l~l~~~~~~~~~~~--~~~~l~~L~~l~ls~n~~~~~~p~~l-~~l~~L~~l~l~~n~~~~~~p~~---~~~l~~~~~ 128 (132)
+.|++++|.+.+..|. .+..+++|+++++++|.+.+..|..+ ..+++|++|++++|.+++..|.. +..+..++.
T Consensus 103 ~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~ 182 (768)
T 3rgz_A 103 TSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKH 182 (768)
T ss_dssp CEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCE
T ss_pred CEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCE
Confidence 9999999988877777 78888899999999888876666654 77888888888888888766665 444555555
Q ss_pred ee
Q 045673 129 LR 130 (132)
Q Consensus 129 L~ 130 (132)
|.
T Consensus 183 L~ 184 (768)
T 3rgz_A 183 LA 184 (768)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.74 E-value=6.7e-18 Score=130.20 Aligned_cols=124 Identities=23% Similarity=0.276 Sum_probs=106.8
Q ss_pred CCCCCC----CCC--CCc------------eeeeeCCCCCeEEEEcCCCCccccCccccccCCCCcEEEe-eeCcceec-
Q 045673 8 SWDPTL----VNP--CTW------------FHVTCNSENSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSV-YKNNISGS- 67 (132)
Q Consensus 8 ~~~~~~----~~~--c~~------------~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l-~~~~~~~~- 67 (132)
+|+..+ .++ |.| .||+|...++|+.|+++++++.+.+|+.++.++.|+.|++ ++|.+.+.
T Consensus 285 ~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~ 364 (876)
T 4ecn_A 285 NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGR 364 (876)
T ss_dssp GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTT
T ss_pred CCCcCCCcccccCCccccccccccccccCcCceEecCCCCEEEEECccCCCCCcCchHHhccccceEeeecccccccccc
Confidence 586554 344 999 9999988899999999999999999999999999999999 66654332
Q ss_pred ---------------------------------------------------------------------------CCccc
Q 045673 68 ---------------------------------------------------------------------------IPSEI 72 (132)
Q Consensus 68 ---------------------------------------------------------------------------~~~~~ 72 (132)
+|..+
T Consensus 365 ~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l 444 (876)
T 4ecn_A 365 LFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAI 444 (876)
T ss_dssp CBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGG
T ss_pred cccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccccccccchhhceeccccCcccchhHHH
Confidence 56778
Q ss_pred cCCcCCcEEEcccccccc-----------------cCCcccC--CCCCCCEEEccCccccccCchHHHHhccCCceee
Q 045673 73 GNLKKLISLGLFNNQLSG-----------------AIPASIG--NLRSLKFMRLNNNNLTGRIPREVIQLIINGSLRI 131 (132)
Q Consensus 73 ~~l~~L~~l~ls~n~~~~-----------------~~p~~l~--~l~~L~~l~l~~n~~~~~~p~~~~~l~~~~~L~~ 131 (132)
..+++|+.+++++|.+.+ .+|..++ .+++|+.|++++|.+.+.+|..++.+..++.|.+
T Consensus 445 ~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~L 522 (876)
T 4ecn_A 445 QRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNI 522 (876)
T ss_dssp GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEEC
T ss_pred hcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEEC
Confidence 888999999999999996 3888887 9999999999999999899999999988888765
No 5
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.72 E-value=5e-17 Score=107.94 Aligned_cols=118 Identities=24% Similarity=0.226 Sum_probs=98.1
Q ss_pred CCCCCCceeeeeCCC----------CCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEE
Q 045673 13 LVNPCTWFHVTCNSE----------NSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLG 82 (132)
Q Consensus 13 ~~~~c~~~~~~~~~~----------~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ 82 (132)
+++.|.|.++.|... .+++.|++++|.+.+..+..|..++.|+.|++++|.+....+..+..+++|+.++
T Consensus 15 ~~~~Cs~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~ 94 (229)
T 3e6j_A 15 SQCSCSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLD 94 (229)
T ss_dssp TTCEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCEEeCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEE
Confidence 359999999999632 3689999999999988888888999999999999999855556678899999999
Q ss_pred cccccccccCCcccCCCCCCCEEEccCccccccCchHHHHhccCCceee
Q 045673 83 LFNNQLSGAIPASIGNLRSLKFMRLNNNNLTGRIPREVIQLIINGSLRI 131 (132)
Q Consensus 83 ls~n~~~~~~p~~l~~l~~L~~l~l~~n~~~~~~p~~~~~l~~~~~L~~ 131 (132)
+++|.++...+..+..+++|+.|++++|.++ .+|..+..+..++.|.+
T Consensus 95 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L 142 (229)
T 3e6j_A 95 LGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLAL 142 (229)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEEC
T ss_pred CCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEEC
Confidence 9999998544455788899999999999988 78888888777777654
No 6
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.69 E-value=1e-16 Score=103.89 Aligned_cols=118 Identities=20% Similarity=0.259 Sum_probs=98.2
Q ss_pred CCCCCceeeeeCCC----------CCeEEEEcCCCCccccCcc-ccccCCCCcEEEeeeCcceecCCccccCCcCCcEEE
Q 045673 14 VNPCTWFHVTCNSE----------NSVIRVDLGNAGLSGPLVP-QLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLG 82 (132)
Q Consensus 14 ~~~c~~~~~~~~~~----------~~l~~L~l~~n~l~~~~~~-~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ 82 (132)
.+.|.|..+.|..+ .+++.|++++|.+.+..+. .+..++.|+.|++++|.+++..+..+..+++|+.++
T Consensus 5 ~C~C~~~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 84 (192)
T 1w8a_A 5 MCHCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQ 84 (192)
T ss_dssp TSEEETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCEECCCEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEE
Confidence 36777887777532 3788999999999866554 478899999999999999978788899999999999
Q ss_pred cccccccccCCcccCCCCCCCEEEccCccccccCchHHHHhccCCceee
Q 045673 83 LFNNQLSGAIPASIGNLRSLKFMRLNNNNLTGRIPREVIQLIINGSLRI 131 (132)
Q Consensus 83 ls~n~~~~~~p~~l~~l~~L~~l~l~~n~~~~~~p~~~~~l~~~~~L~~ 131 (132)
+++|.+.+..+..+..+++|+.|++++|++++..|..+..+..++.|.+
T Consensus 85 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 133 (192)
T 1w8a_A 85 LGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNL 133 (192)
T ss_dssp CCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEEC
T ss_pred CCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEe
Confidence 9999998766667889999999999999999877888888877777754
No 7
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.65 E-value=7.2e-16 Score=98.42 Aligned_cols=117 Identities=26% Similarity=0.308 Sum_probs=94.4
Q ss_pred CCCCCceeeeeCCC----------CCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEc
Q 045673 14 VNPCTWFHVTCNSE----------NSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGL 83 (132)
Q Consensus 14 ~~~c~~~~~~~~~~----------~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l 83 (132)
.+.|.|.++.|... .+++.|++++|.+.+..+..+..++.|+.|++++|.+....+..+..+++|+.+++
T Consensus 4 ~C~C~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 83 (177)
T 2o6r_A 4 RCSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYL 83 (177)
T ss_dssp TCEEETTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCEeCCCEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEEC
Confidence 36788988888532 37899999999999766677888999999999999998666666788999999999
Q ss_pred ccccccccCCcccCCCCCCCEEEccCccccccCch-HHHHhccCCceee
Q 045673 84 FNNQLSGAIPASIGNLRSLKFMRLNNNNLTGRIPR-EVIQLIINGSLRI 131 (132)
Q Consensus 84 s~n~~~~~~p~~l~~l~~L~~l~l~~n~~~~~~p~-~~~~l~~~~~L~~ 131 (132)
++|.+++..+..+..+++|+.|++++|.++ .+|. .+..+..++.|.+
T Consensus 84 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l 131 (177)
T 2o6r_A 84 HENKLQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWL 131 (177)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEEC
T ss_pred CCCCccccCHHHhhCCcccCEEECcCCcce-EeCHHHhcCCcccCEEEe
Confidence 999998554456788999999999999999 4554 4566777776654
No 8
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.65 E-value=6.1e-16 Score=102.17 Aligned_cols=116 Identities=21% Similarity=0.285 Sum_probs=82.9
Q ss_pred CCCCCceeeeeCCC----------CCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEc
Q 045673 14 VNPCTWFHVTCNSE----------NSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGL 83 (132)
Q Consensus 14 ~~~c~~~~~~~~~~----------~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l 83 (132)
.+.|.+..+.|... .+++.|++++|.+.+..+..|..++.|+.|++++|.+....+..+..+++|+.+++
T Consensus 8 ~C~C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L 87 (220)
T 2v9t_B 8 ACTCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVL 87 (220)
T ss_dssp TSEEETTEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEEC
T ss_pred CCEECCCEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEEC
Confidence 36677877777532 26788888888888666667777888888888888887677777777888888888
Q ss_pred ccccccccCCc-ccCCCCCCCEEEccCccccccCchHHHHhccCCcee
Q 045673 84 FNNQLSGAIPA-SIGNLRSLKFMRLNNNNLTGRIPREVIQLIINGSLR 130 (132)
Q Consensus 84 s~n~~~~~~p~-~l~~l~~L~~l~l~~n~~~~~~p~~~~~l~~~~~L~ 130 (132)
++|.+. .+|. .+..+++|+.|++++|.+++..|..+..+..++.|.
T Consensus 88 s~N~l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 134 (220)
T 2v9t_B 88 YGNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLS 134 (220)
T ss_dssp CSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcCC-ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEE
Confidence 888877 3343 456677777777777777755556666666665554
No 9
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.65 E-value=7.2e-16 Score=100.70 Aligned_cols=118 Identities=25% Similarity=0.224 Sum_probs=84.3
Q ss_pred CCCCCceeeeeCCC----------CCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEc
Q 045673 14 VNPCTWFHVTCNSE----------NSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGL 83 (132)
Q Consensus 14 ~~~c~~~~~~~~~~----------~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l 83 (132)
.+.|.|.++.|... .+++.|++++|.+.+..+..+..++.|+.|++++|.+....+..+..+++|+++++
T Consensus 4 ~C~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 83 (208)
T 2o6s_A 4 RCSCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNL 83 (208)
T ss_dssp TCEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCEECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEEC
Confidence 36788888888533 25888999999888666666778888888888888887555555677788888888
Q ss_pred ccccccccCCcccCCCCCCCEEEccCccccccCchHHHHhccCCceee
Q 045673 84 FNNQLSGAIPASIGNLRSLKFMRLNNNNLTGRIPREVIQLIINGSLRI 131 (132)
Q Consensus 84 s~n~~~~~~p~~l~~l~~L~~l~l~~n~~~~~~p~~~~~l~~~~~L~~ 131 (132)
++|.+....+..+..+++|+.|++++|.+++..+..+..+..++.|.+
T Consensus 84 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 131 (208)
T 2o6s_A 84 STNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRL 131 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEEC
Confidence 888887443345677777888888777777443344556666665543
No 10
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.63 E-value=6.6e-17 Score=112.55 Aligned_cols=113 Identities=19% Similarity=0.274 Sum_probs=81.9
Q ss_pred CCCCC---CCCCCCCCceeeeeC---------CCCCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCcccc
Q 045673 6 LQSWD---PTLVNPCTWFHVTCN---------SENSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIG 73 (132)
Q Consensus 6 ~~~~~---~~~~~~c~~~~~~~~---------~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~ 73 (132)
++.|. ....+.|.|.|+.|. ..++++.|++++|.+. .+|..+..+.+|+.|++++|.+. .+|..+.
T Consensus 47 ~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~ 124 (328)
T 4fcg_A 47 HSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQ 124 (328)
T ss_dssp HHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGG
T ss_pred hhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHh
Confidence 45573 334689999999983 2367888888888887 56666777888888888888877 6677777
Q ss_pred CCcCCcEEEcccccccccCCcccCCCCCCCEEEccCccccccCchHHH
Q 045673 74 NLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRLNNNNLTGRIPREVI 121 (132)
Q Consensus 74 ~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~l~~n~~~~~~p~~~~ 121 (132)
.+++|+.+++++|.+. .+|..+..+++|++|++++|++.+.+|..+.
T Consensus 125 ~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~ 171 (328)
T 4fcg_A 125 QFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLA 171 (328)
T ss_dssp GGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSE
T ss_pred ccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHh
Confidence 7777888888777777 6677777777777777777666656665443
No 11
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.62 E-value=2.9e-15 Score=97.11 Aligned_cols=117 Identities=21% Similarity=0.288 Sum_probs=96.8
Q ss_pred CCCCCceeeeeCCC----------CCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEc
Q 045673 14 VNPCTWFHVTCNSE----------NSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGL 83 (132)
Q Consensus 14 ~~~c~~~~~~~~~~----------~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l 83 (132)
.+.|.+..+.|..+ .+++.|++++|.+. .+|..|..+..|+.|++++|.++...+..+..+++|+.+++
T Consensus 7 ~C~C~~~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~L 85 (193)
T 2wfh_A 7 ECTCLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLIL 85 (193)
T ss_dssp TCEEETTEEECTTSCCSSCCSCCCTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCEeCCCEEEcCCCCCCcCCCCCCCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEEC
Confidence 36677777777432 37899999999998 56788999999999999999999777788999999999999
Q ss_pred ccccccccCCcccCCCCCCCEEEccCccccccCchHHHHhccCCceee
Q 045673 84 FNNQLSGAIPASIGNLRSLKFMRLNNNNLTGRIPREVIQLIINGSLRI 131 (132)
Q Consensus 84 s~n~~~~~~p~~l~~l~~L~~l~l~~n~~~~~~p~~~~~l~~~~~L~~ 131 (132)
++|.+....|..|..+++|+.|++++|.++...+..+..+..++.|.+
T Consensus 86 s~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 133 (193)
T 2wfh_A 86 SYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAI 133 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEe
Confidence 999999666668999999999999999999433345667777776654
No 12
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.60 E-value=3.6e-15 Score=98.46 Aligned_cols=101 Identities=16% Similarity=0.171 Sum_probs=49.5
Q ss_pred eEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEEccC
Q 045673 30 VIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRLNN 109 (132)
Q Consensus 30 l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~l~~ 109 (132)
++.|++++|.+.+..+..|..+..|+.|++++|.+.+..+..+..+++|+.+++++|.+.+..|..+..+++|+.|++++
T Consensus 59 L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 138 (220)
T 2v70_A 59 LRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYD 138 (220)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTT
T ss_pred CCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCC
Confidence 44444444444433333444444555555555554433334444555555555555555544444555555555555555
Q ss_pred ccccccCchHHHHhccCCcee
Q 045673 110 NNLTGRIPREVIQLIINGSLR 130 (132)
Q Consensus 110 n~~~~~~p~~~~~l~~~~~L~ 130 (132)
|++++..|..+..+..++.|.
T Consensus 139 N~l~~~~~~~~~~l~~L~~L~ 159 (220)
T 2v70_A 139 NQITTVAPGAFDTLHSLSTLN 159 (220)
T ss_dssp SCCCCBCTTTTTTCTTCCEEE
T ss_pred CcCCEECHHHhcCCCCCCEEE
Confidence 555544455555555444443
No 13
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.59 E-value=3.1e-15 Score=98.79 Aligned_cols=118 Identities=19% Similarity=0.171 Sum_probs=100.5
Q ss_pred CCCCCceeeeeCCC----------CCeEEEEcCCCCccccCc-cccccCCCCcEEEeeeCcceecCCccccCCcCCcEEE
Q 045673 14 VNPCTWFHVTCNSE----------NSVIRVDLGNAGLSGPLV-PQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLG 82 (132)
Q Consensus 14 ~~~c~~~~~~~~~~----------~~l~~L~l~~n~l~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ 82 (132)
.+.|.|..+.|..+ ..++.|++++|.+.+..+ ..|..++.|+.|++++|.+++..+..+..+++|+.++
T Consensus 8 ~C~C~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~ 87 (220)
T 2v70_A 8 KCRCEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEIL 87 (220)
T ss_dssp TCEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCEECCCEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEE
Confidence 47788888888532 257899999999997654 4578999999999999999978777899999999999
Q ss_pred cccccccccCCcccCCCCCCCEEEccCccccccCchHHHHhccCCceee
Q 045673 83 LFNNQLSGAIPASIGNLRSLKFMRLNNNNLTGRIPREVIQLIINGSLRI 131 (132)
Q Consensus 83 ls~n~~~~~~p~~l~~l~~L~~l~l~~n~~~~~~p~~~~~l~~~~~L~~ 131 (132)
+++|.+.+..+..+..+++|+.|++++|.+++..|..+..+..++.|.+
T Consensus 88 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 136 (220)
T 2v70_A 88 LTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSL 136 (220)
T ss_dssp CCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEEC
T ss_pred CCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEEC
Confidence 9999999665567999999999999999999777888888888877764
No 14
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.56 E-value=1.2e-14 Score=96.01 Aligned_cols=105 Identities=22% Similarity=0.209 Sum_probs=90.5
Q ss_pred CCCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEE
Q 045673 27 ENSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMR 106 (132)
Q Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~ 106 (132)
..+++.|++++|.+.+..|..|..++.|+.|++++|.+....+..+..+++|+.+++++|.+.+..|..+..+++|+.|+
T Consensus 55 l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 134 (220)
T 2v9t_B 55 YKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLS 134 (220)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEE
Confidence 36899999999999988888999999999999999999966556678899999999999999977677899999999999
Q ss_pred ccCccccccCchHHHHhccCCceee
Q 045673 107 LNNNNLTGRIPREVIQLIINGSLRI 131 (132)
Q Consensus 107 l~~n~~~~~~p~~~~~l~~~~~L~~ 131 (132)
+++|.+++..+..+..+..++.|.+
T Consensus 135 L~~N~l~~~~~~~~~~l~~L~~L~L 159 (220)
T 2v9t_B 135 LYDNKLQTIAKGTFSPLRAIQTMHL 159 (220)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred CCCCcCCEECHHHHhCCCCCCEEEe
Confidence 9999999655566777777777654
No 15
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.56 E-value=6e-15 Score=101.98 Aligned_cols=104 Identities=32% Similarity=0.546 Sum_probs=93.0
Q ss_pred CCeEEEEcCC-CCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEE
Q 045673 28 NSVIRVDLGN-AGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMR 106 (132)
Q Consensus 28 ~~l~~L~l~~-n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~ 106 (132)
.+++.|++++ |.+.+.+|..+..+++|+.|++++|.+.+..|..+..+++|+++++++|.+.+..|..+..+++|++|+
T Consensus 76 ~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 155 (313)
T 1ogq_A 76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT 155 (313)
T ss_dssp TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEE
Confidence 5789999995 999988899999999999999999999988898899999999999999999888888899999999999
Q ss_pred ccCccccccCchHHHHhc-cCCceee
Q 045673 107 LNNNNLTGRIPREVIQLI-INGSLRI 131 (132)
Q Consensus 107 l~~n~~~~~~p~~~~~l~-~~~~L~~ 131 (132)
+++|.+++.+|..++.+. .++.|.+
T Consensus 156 L~~N~l~~~~p~~l~~l~~~L~~L~L 181 (313)
T 1ogq_A 156 FDGNRISGAIPDSYGSFSKLFTSMTI 181 (313)
T ss_dssp CCSSCCEEECCGGGGCCCTTCCEEEC
T ss_pred CcCCcccCcCCHHHhhhhhcCcEEEC
Confidence 999999988998888887 6666654
No 16
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.55 E-value=3.3e-14 Score=90.38 Aligned_cols=102 Identities=23% Similarity=0.249 Sum_probs=87.0
Q ss_pred CCCCceeeeeCCC----------CCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcc
Q 045673 15 NPCTWFHVTCNSE----------NSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLF 84 (132)
Q Consensus 15 ~~c~~~~~~~~~~----------~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls 84 (132)
+.|.|+.+.|..+ .+++.|++++|.+.+..+..|..+..|+.|++++|.+.+..+..+..+++|+.++++
T Consensus 7 C~C~~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 7 CSCSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp CEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcCCCEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 5677877777432 478999999999998888889999999999999999996666677899999999999
Q ss_pred cccccccCCcccCCCCCCCEEEccCccccccC
Q 045673 85 NNQLSGAIPASIGNLRSLKFMRLNNNNLTGRI 116 (132)
Q Consensus 85 ~n~~~~~~p~~l~~l~~L~~l~l~~n~~~~~~ 116 (132)
+|.++...+..+..+++|+.|++++|.+....
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 99999544456889999999999999998543
No 17
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.55 E-value=1.3e-14 Score=98.24 Aligned_cols=102 Identities=25% Similarity=0.229 Sum_probs=65.1
Q ss_pred CeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEEcc
Q 045673 29 SVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRLN 108 (132)
Q Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~l~ 108 (132)
.++.|++++|.+.+..+..|..+++|+.|++++|.+....+..+..+++|+.+++++|.+....+..+..+++|+.|+++
T Consensus 38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 117 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD 117 (270)
T ss_dssp TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECC
T ss_pred CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECC
Confidence 57788888888876655667777888888888877774444445667777777777777763333345566666666666
Q ss_pred CccccccCchHHHHhccCCcee
Q 045673 109 NNNLTGRIPREVIQLIINGSLR 130 (132)
Q Consensus 109 ~n~~~~~~p~~~~~l~~~~~L~ 130 (132)
+|.+++..+..+..+..++.|.
T Consensus 118 ~n~l~~~~~~~~~~l~~L~~L~ 139 (270)
T 2o6q_A 118 RNQLKSLPPRVFDSLTKLTYLS 139 (270)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCccCeeCHHHhCcCcCCCEEE
Confidence 6666643334444444444443
No 18
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.53 E-value=4.1e-14 Score=94.87 Aligned_cols=102 Identities=24% Similarity=0.179 Sum_probs=46.5
Q ss_pred CeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEEcc
Q 045673 29 SVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRLN 108 (132)
Q Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~l~ 108 (132)
+++.|++++|.+.+..+..|..++.|+.|++++|.+....+..+..+++|+.+++++|.+....+..+..+++|+.|+++
T Consensus 60 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls 139 (251)
T 3m19_A 60 KLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLN 139 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred cCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECc
Confidence 34444444444444333334444444444444444443333334444555555555555542222234455555555555
Q ss_pred CccccccCchHHHHhccCCcee
Q 045673 109 NNNLTGRIPREVIQLIINGSLR 130 (132)
Q Consensus 109 ~n~~~~~~p~~~~~l~~~~~L~ 130 (132)
+|.+++..+..+..+..++.|.
T Consensus 140 ~N~l~~~~~~~~~~l~~L~~L~ 161 (251)
T 3m19_A 140 TNQLQSIPAGAFDKLTNLQTLS 161 (251)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCcCCccCHHHcCcCcCCCEEE
Confidence 5555532223444444444443
No 19
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.52 E-value=1.8e-14 Score=106.79 Aligned_cols=103 Identities=19% Similarity=0.106 Sum_probs=83.8
Q ss_pred CeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEEcc
Q 045673 29 SVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRLN 108 (132)
Q Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~l~ 108 (132)
+++.|++++|.|++..+..|..+++|+.|++++|.+....+..+..+++|+++++++|+++...+..|..+++|++|+++
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls 132 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 132 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence 68999999999998777889999999999999999987777788889999999999999884434467888888888888
Q ss_pred CccccccCchHHHHhccCCceee
Q 045673 109 NNNLTGRIPREVIQLIINGSLRI 131 (132)
Q Consensus 109 ~n~~~~~~p~~~~~l~~~~~L~~ 131 (132)
+|++++..+..++.+..++.|.+
T Consensus 133 ~N~l~~l~~~~~~~L~~L~~L~L 155 (635)
T 4g8a_A 133 ETNLASLENFPIGHLKTLKELNV 155 (635)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEEC
T ss_pred CCcCCCCChhhhhcCcccCeecc
Confidence 88888443445677777766654
No 20
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.52 E-value=3.7e-14 Score=99.75 Aligned_cols=117 Identities=20% Similarity=0.149 Sum_probs=74.2
Q ss_pred CCCCCceeeeeCCC----------CCeEEEEcCCCCccccCccccc-cCCCCcEEEeeeCcceecCCccccCCcCCcEEE
Q 045673 14 VNPCTWFHVTCNSE----------NSVIRVDLGNAGLSGPLVPQLG-LLTNLQYLSVYKNNISGSIPSEIGNLKKLISLG 82 (132)
Q Consensus 14 ~~~c~~~~~~~~~~----------~~l~~L~l~~n~l~~~~~~~~~-~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ 82 (132)
.+.|.+..+.|... ..++.|++++|.+++..+..+. .+.+|+.|++++|.+....+..+..+++|+.++
T Consensus 15 ~C~C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~ 94 (361)
T 2xot_A 15 NCLCASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLD 94 (361)
T ss_dssp TCEEETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCEECCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEE
Confidence 35666666666422 2467778888877765555555 677777777777777755556666677777777
Q ss_pred cccccccccCCcccCCCCCCCEEEccCccccccCchHHHHhccCCcee
Q 045673 83 LFNNQLSGAIPASIGNLRSLKFMRLNNNNLTGRIPREVIQLIINGSLR 130 (132)
Q Consensus 83 ls~n~~~~~~p~~l~~l~~L~~l~l~~n~~~~~~p~~~~~l~~~~~L~ 130 (132)
+++|.+....+..|..+++|+.|++++|.+++..|..+..+..++.|.
T Consensus 95 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~ 142 (361)
T 2xot_A 95 LSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLY 142 (361)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEE
Confidence 777776644344566666666666666666644455555555555544
No 21
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.51 E-value=1.9e-14 Score=109.74 Aligned_cols=91 Identities=40% Similarity=0.614 Sum_probs=87.6
Q ss_pred CCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEEc
Q 045673 28 NSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRL 107 (132)
Q Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~l 107 (132)
..++.|++++|.+.+.+|..+..++.|+.|++++|.+++.+|..+..+++|+.+++++|.+++.+|..+..+++|+++++
T Consensus 632 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~l 711 (768)
T 3rgz_A 632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 711 (768)
T ss_dssp BCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEEC
T ss_pred ccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEEC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccccccCch
Q 045673 108 NNNNLTGRIPR 118 (132)
Q Consensus 108 ~~n~~~~~~p~ 118 (132)
++|+++|.+|.
T Consensus 712 s~N~l~g~iP~ 722 (768)
T 3rgz_A 712 SNNNLSGPIPE 722 (768)
T ss_dssp CSSEEEEECCS
T ss_pred cCCcccccCCC
Confidence 99999999985
No 22
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.51 E-value=5.4e-14 Score=93.28 Aligned_cols=104 Identities=21% Similarity=0.195 Sum_probs=86.9
Q ss_pred CCCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEE
Q 045673 27 ENSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMR 106 (132)
Q Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~ 106 (132)
..+|+.|++++|.+....+..|..++.|+.|++++|.+....+..+..+++|+.+++++|.+. .+|..+..+++|+.|+
T Consensus 63 l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~ 141 (229)
T 3e6j_A 63 LINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLA 141 (229)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEE
T ss_pred ccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEE
Confidence 467999999999998666667788999999999999999666666788999999999999998 7888889999999999
Q ss_pred ccCccccccCchHHHHhccCCceee
Q 045673 107 LNNNNLTGRIPREVIQLIINGSLRI 131 (132)
Q Consensus 107 l~~n~~~~~~p~~~~~l~~~~~L~~ 131 (132)
+++|++++..+..+..+..++.|.+
T Consensus 142 L~~N~l~~~~~~~~~~l~~L~~L~l 166 (229)
T 3e6j_A 142 LDQNQLKSIPHGAFDRLSSLTHAYL 166 (229)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCcCCccCHHHHhCCCCCCEEEe
Confidence 9999999544455677777776654
No 23
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.51 E-value=6.1e-14 Score=97.57 Aligned_cols=102 Identities=23% Similarity=0.227 Sum_probs=75.8
Q ss_pred CCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEEc
Q 045673 28 NSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRL 107 (132)
Q Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~l 107 (132)
.+++.|++++|.+.+ +|+.+..+++|+.|++++|.+.+..|..+..+++|+.+++++|.+.+.+|..+..+++|+.|++
T Consensus 206 ~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L 284 (328)
T 4fcg_A 206 QNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDL 284 (328)
T ss_dssp TTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEEC
T ss_pred CCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeC
Confidence 467777777777774 4455777777777777777777677777777777888888777776677777777788888888
Q ss_pred cCccccccCchHHHHhccCCcee
Q 045673 108 NNNNLTGRIPREVIQLIINGSLR 130 (132)
Q Consensus 108 ~~n~~~~~~p~~~~~l~~~~~L~ 130 (132)
++|++.+.+|+.++.+..++.+.
T Consensus 285 ~~n~~~~~iP~~l~~L~~L~~l~ 307 (328)
T 4fcg_A 285 RGCVNLSRLPSLIAQLPANCIIL 307 (328)
T ss_dssp TTCTTCCCCCGGGGGSCTTCEEE
T ss_pred CCCCchhhccHHHhhccCceEEe
Confidence 88777777888777777766654
No 24
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.50 E-value=8e-14 Score=93.44 Aligned_cols=103 Identities=21% Similarity=0.188 Sum_probs=55.9
Q ss_pred CCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEEc
Q 045673 28 NSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRL 107 (132)
Q Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~l 107 (132)
.+++.|++++|.+.+..+..|..++.|+.|++++|.+....+..+..+++|+.+++++|.+....+..+..+++|+.|++
T Consensus 83 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 162 (251)
T 3m19_A 83 TELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSL 162 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEEC
Confidence 45566666666665544455555666666666666655444444455566666666666655332334555566666666
Q ss_pred cCccccccCchHHHHhccCCcee
Q 045673 108 NNNNLTGRIPREVIQLIINGSLR 130 (132)
Q Consensus 108 ~~n~~~~~~p~~~~~l~~~~~L~ 130 (132)
++|.+++..+..+..+..++.|.
T Consensus 163 ~~N~l~~~~~~~~~~l~~L~~L~ 185 (251)
T 3m19_A 163 STNQLQSVPHGAFDRLGKLQTIT 185 (251)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEE
T ss_pred CCCcCCccCHHHHhCCCCCCEEE
Confidence 66666633333444444444443
No 25
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.50 E-value=2.3e-14 Score=105.13 Aligned_cols=104 Identities=25% Similarity=0.211 Sum_probs=83.6
Q ss_pred CCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEEc
Q 045673 28 NSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRL 107 (132)
Q Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~l 107 (132)
.+++.|++++|.+.+..+..|..+++|+.|++++|.+.+..+..+..+++|+.+++++|.+.+..|..++.+++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 47889999999998777788888999999999999988777788888889999999999888544445888888999999
Q ss_pred cCccccc-cCchHHHHhccCCceee
Q 045673 108 NNNNLTG-RIPREVIQLIINGSLRI 131 (132)
Q Consensus 108 ~~n~~~~-~~p~~~~~l~~~~~L~~ 131 (132)
++|.+++ ..|..+..+..++.|.+
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L 130 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRI 130 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEE
T ss_pred CCCcccccchhhhhhccCCccEEEC
Confidence 8888874 34566777766666653
No 26
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.49 E-value=2.4e-13 Score=86.77 Aligned_cols=103 Identities=25% Similarity=0.270 Sum_probs=83.0
Q ss_pred CCCCceeeeeCCC----------CCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcc
Q 045673 15 NPCTWFHVTCNSE----------NSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLF 84 (132)
Q Consensus 15 ~~c~~~~~~~~~~----------~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls 84 (132)
+.|....+.|..+ .+++.|++++|.+.+..|..|..+++|+.|++++|.+.+..+..+..+++|+.++++
T Consensus 10 C~C~~~~l~~~~n~l~~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 10 CSCDQTLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SEECSSEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEECCcEEEeCCCCCCccCCCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence 4555555555322 478999999999998888889999999999999999996655567889999999999
Q ss_pred cccccccCCcccCCCCCCCEEEccCccccccCch
Q 045673 85 NNQLSGAIPASIGNLRSLKFMRLNNNNLTGRIPR 118 (132)
Q Consensus 85 ~n~~~~~~p~~l~~l~~L~~l~l~~n~~~~~~p~ 118 (132)
+|.+....+..+..+++|+.|++++|.+.. .+.
T Consensus 90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c-~~~ 122 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWDC-ECR 122 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCBCT-TBG
T ss_pred CCccceeCHHHhccccCCCEEEeCCCCccc-ccc
Confidence 999994433358899999999999999984 443
No 27
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.49 E-value=1.4e-13 Score=89.80 Aligned_cols=105 Identities=24% Similarity=0.225 Sum_probs=80.2
Q ss_pred CCCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEE
Q 045673 27 ENSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMR 106 (132)
Q Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~ 106 (132)
..+++.|++++|.+.+..+..|..++.|+.|++++|.+....+..+..+++|+.+++++|.+....+..+..+++|+.|+
T Consensus 51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 130 (208)
T 2o6s_A 51 LTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLR 130 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEE
Confidence 35788899999988866666677888999999999988855555677888899999998888854444578888899999
Q ss_pred ccCccccccCchHHHHhccCCceee
Q 045673 107 LNNNNLTGRIPREVIQLIINGSLRI 131 (132)
Q Consensus 107 l~~n~~~~~~p~~~~~l~~~~~L~~ 131 (132)
+++|.+++..+..+..+..++.|.+
T Consensus 131 l~~N~l~~~~~~~~~~l~~L~~L~l 155 (208)
T 2o6s_A 131 LYQNQLKSVPDGVFDRLTSLQYIWL 155 (208)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred CCCCccceeCHHHhccCCCccEEEe
Confidence 9888888444444666767666653
No 28
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.48 E-value=1.5e-13 Score=88.85 Aligned_cols=91 Identities=23% Similarity=0.304 Sum_probs=84.4
Q ss_pred CCCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEE
Q 045673 27 ENSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMR 106 (132)
Q Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~ 106 (132)
..+++.|++++|.+++..|..|..++.|+.|++++|.+.+..+..+..+++|+.+++++|.+++..|..+..+++|+.++
T Consensus 53 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 132 (192)
T 1w8a_A 53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN 132 (192)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEE
T ss_pred CCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEE
Confidence 46899999999999988889999999999999999999988888899999999999999999988888999999999999
Q ss_pred ccCccccccCc
Q 045673 107 LNNNNLTGRIP 117 (132)
Q Consensus 107 l~~n~~~~~~p 117 (132)
+++|.+.+..+
T Consensus 133 L~~N~l~c~c~ 143 (192)
T 1w8a_A 133 LASNPFNCNCH 143 (192)
T ss_dssp CTTCCBCCSGG
T ss_pred eCCCCccCcCc
Confidence 99999997654
No 29
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.46 E-value=2.5e-13 Score=92.06 Aligned_cols=103 Identities=23% Similarity=0.191 Sum_probs=55.0
Q ss_pred CCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEEc
Q 045673 28 NSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRL 107 (132)
Q Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~l 107 (132)
.+++.|++++|.+.+..+..+..++.|+.|++++|.+.+..+..+..+++|+.+++++|.+++..+..+..+++|+.|++
T Consensus 109 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 188 (272)
T 3rfs_A 109 TNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRL 188 (272)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEEC
Confidence 34555555555555444444555555666666655555444444455556666666666555333334455566666666
Q ss_pred cCccccccCchHHHHhccCCcee
Q 045673 108 NNNNLTGRIPREVIQLIINGSLR 130 (132)
Q Consensus 108 ~~n~~~~~~p~~~~~l~~~~~L~ 130 (132)
++|.+++..|..+..+..++.|.
T Consensus 189 ~~N~l~~~~~~~~~~l~~L~~L~ 211 (272)
T 3rfs_A 189 YQNQLKSVPDGVFDRLTSLQYIW 211 (272)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEE
T ss_pred CCCcCCccCHHHHhCCcCCCEEE
Confidence 66666644444445555554443
No 30
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.46 E-value=1.1e-13 Score=87.38 Aligned_cols=100 Identities=26% Similarity=0.227 Sum_probs=68.8
Q ss_pred CCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCC--cccCCCCCCCEE
Q 045673 28 NSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIP--ASIGNLRSLKFM 105 (132)
Q Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p--~~l~~l~~L~~l 105 (132)
.+++.|++++|.+.+. ..+..++.|+.|++++|.+.+..+..+..+++|+.+++++|.+. .+| ..+..+++|+.|
T Consensus 49 ~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~l~~l~~L~~L 125 (168)
T 2ell_A 49 VNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK-DISTLEPLKKLECLKSL 125 (168)
T ss_dssp GGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCC-SSGGGGGGSSCSCCCEE
T ss_pred CCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccC-cchhHHHHhcCCCCCEE
Confidence 5677777777777654 56677777888888887777555555555777888888888776 333 567777888888
Q ss_pred EccCccccccCc---hHHHHhccCCcee
Q 045673 106 RLNNNNLTGRIP---REVIQLIINGSLR 130 (132)
Q Consensus 106 ~l~~n~~~~~~p---~~~~~l~~~~~L~ 130 (132)
++++|.+++..+ ..+..++.++.|.
T Consensus 126 ~l~~N~l~~~~~~~~~~~~~l~~L~~L~ 153 (168)
T 2ell_A 126 DLFNCEVTNLNDYRESVFKLLPQLTYLD 153 (168)
T ss_dssp ECCSSGGGTSTTHHHHHHTTCSSCCEET
T ss_pred EeeCCcCcchHHHHHHHHHhCccCcEec
Confidence 888888874332 2555666665554
No 31
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.45 E-value=2.9e-13 Score=91.74 Aligned_cols=105 Identities=22% Similarity=0.174 Sum_probs=80.5
Q ss_pred CCCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEE
Q 045673 27 ENSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMR 106 (132)
Q Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~ 106 (132)
..+++.|++++|.+.+..+..+..++.|+.|++++|.+.+..+..+..+++|+.+++++|.+.+..+..+..+++|+.|+
T Consensus 84 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 163 (272)
T 3rfs_A 84 LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELD 163 (272)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEE
Confidence 35788888888888876666677888888888888888866666677888888888888888854444567888888888
Q ss_pred ccCccccccCchHHHHhccCCceee
Q 045673 107 LNNNNLTGRIPREVIQLIINGSLRI 131 (132)
Q Consensus 107 l~~n~~~~~~p~~~~~l~~~~~L~~ 131 (132)
+++|++++..+..+..+..++.|.+
T Consensus 164 l~~n~l~~~~~~~~~~l~~L~~L~L 188 (272)
T 3rfs_A 164 LSYNQLQSLPEGVFDKLTQLKDLRL 188 (272)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCCcCccCHHHhcCCccCCEEEC
Confidence 8888888555555667777776654
No 32
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.45 E-value=4.6e-13 Score=98.83 Aligned_cols=101 Identities=20% Similarity=0.205 Sum_probs=90.0
Q ss_pred CCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEEc
Q 045673 28 NSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRL 107 (132)
Q Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~l 107 (132)
++++.|++++|.+.+..+..|..++.|+.|++++|.+.+..+..+..+++|+++++++|.+. .+|.. .+++|+.|++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEEC
Confidence 57999999999999887789999999999999999999888888999999999999999998 67766 7899999999
Q ss_pred cCccccc-cCchHHHHhccCCceee
Q 045673 108 NNNNLTG-RIPREVIQLIINGSLRI 131 (132)
Q Consensus 108 ~~n~~~~-~~p~~~~~l~~~~~L~~ 131 (132)
++|.+++ .+|..+..+..++.|.+
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L~L 153 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFLGL 153 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEEEE
T ss_pred CCCCccccCchHhhcccCcccEEec
Confidence 9999995 34688998888887764
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.45 E-value=2.3e-13 Score=98.49 Aligned_cols=103 Identities=21% Similarity=0.228 Sum_probs=76.3
Q ss_pred CeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEEcc
Q 045673 29 SVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRLN 108 (132)
Q Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~l~ 108 (132)
+++.|++++|.+.+..+..|..+++|+.|++++|.+.+..+..+..+++|+.+++++|.+....+..+..+++|+.|+++
T Consensus 33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 112 (477)
T 2id5_A 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDIS 112 (477)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECT
T ss_pred CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECC
Confidence 67788888888887767778888888888888888877777777778888888888888773333356777778888887
Q ss_pred CccccccCchHHHHhccCCceee
Q 045673 109 NNNLTGRIPREVIQLIINGSLRI 131 (132)
Q Consensus 109 ~n~~~~~~p~~~~~l~~~~~L~~ 131 (132)
+|.+.+..|..+..+..++.|.+
T Consensus 113 ~n~i~~~~~~~~~~l~~L~~L~l 135 (477)
T 2id5_A 113 ENKIVILLDYMFQDLYNLKSLEV 135 (477)
T ss_dssp TSCCCEECTTTTTTCTTCCEEEE
T ss_pred CCccccCChhHccccccCCEEEC
Confidence 77777655666666666666543
No 34
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.44 E-value=3.7e-13 Score=91.58 Aligned_cols=101 Identities=22% Similarity=0.156 Sum_probs=49.7
Q ss_pred CeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEccccc-ccccCCcccCCCCCCCEEEc
Q 045673 29 SVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQ-LSGAIPASIGNLRSLKFMRL 107 (132)
Q Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~-~~~~~p~~l~~l~~L~~l~l 107 (132)
+++.|++++|.+.+..+..|..++.|+.|++++|.+.+..+..+..+++|+.+++++|. +....|..+..+++|+.|++
T Consensus 33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l 112 (285)
T 1ozn_A 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL 112 (285)
T ss_dssp TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEEC
Confidence 45555555555554444445555555555555555554444455555555555555554 44222344444455555555
Q ss_pred cCccccccCchHHHHhccCCce
Q 045673 108 NNNNLTGRIPREVIQLIINGSL 129 (132)
Q Consensus 108 ~~n~~~~~~p~~~~~l~~~~~L 129 (132)
++|.+++..|..+..+..++.|
T Consensus 113 ~~n~l~~~~~~~~~~l~~L~~L 134 (285)
T 1ozn_A 113 DRCGLQELGPGLFRGLAALQYL 134 (285)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCcCCEECHhHhhCCcCCCEE
Confidence 5555443333334444444433
No 35
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.44 E-value=1.2e-13 Score=96.57 Aligned_cols=115 Identities=26% Similarity=0.282 Sum_probs=92.5
Q ss_pred CCCCCceeeeeCC------------CCCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEE
Q 045673 14 VNPCTWFHVTCNS------------ENSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISL 81 (132)
Q Consensus 14 ~~~c~~~~~~~~~------------~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l 81 (132)
...|.|.++ |+. ..+++.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.+
T Consensus 27 ~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 27 SLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCCCeE-eeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence 477888775 531 1378999999999987666688899999999999999987777888899999999
Q ss_pred EcccccccccCCcc-cCCCCCCCEEEccCccccccCch--HHHHhccCCceee
Q 045673 82 GLFNNQLSGAIPAS-IGNLRSLKFMRLNNNNLTGRIPR--EVIQLIINGSLRI 131 (132)
Q Consensus 82 ~ls~n~~~~~~p~~-l~~l~~L~~l~l~~n~~~~~~p~--~~~~l~~~~~L~~ 131 (132)
++++|.++ .+|.. +..+++|++|++++|.++ .+|. .+..+..++.|.+
T Consensus 106 ~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l 156 (353)
T 2z80_A 106 DLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRV 156 (353)
T ss_dssp ECCSSCCS-SCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEE
T ss_pred ECCCCcCC-cCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEEC
Confidence 99999998 45554 888999999999999998 5554 5667777776654
No 36
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.44 E-value=7.6e-14 Score=86.56 Aligned_cols=103 Identities=21% Similarity=0.162 Sum_probs=83.8
Q ss_pred CCCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEccccccccc-CCcccCCCCCCCEE
Q 045673 27 ENSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGA-IPASIGNLRSLKFM 105 (132)
Q Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~-~p~~l~~l~~L~~l 105 (132)
..+++.|++++|.+.+. ..+..++.|+.|++++|.+.+..|..+..+++|+.+++++|.+.+. .+..+..+++|+.+
T Consensus 41 l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L 118 (149)
T 2je0_A 41 FEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSL 118 (149)
T ss_dssp CTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEE
T ss_pred cCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEE
Confidence 46899999999999865 6788899999999999999866777766789999999999998842 23678899999999
Q ss_pred EccCccccccCc---hHHHHhccCCceee
Q 045673 106 RLNNNNLTGRIP---REVIQLIINGSLRI 131 (132)
Q Consensus 106 ~l~~n~~~~~~p---~~~~~l~~~~~L~~ 131 (132)
++++|.+++..+ ..+..++.++.|.+
T Consensus 119 ~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 119 DLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp ECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred eCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 999999995444 46777877777653
No 37
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.44 E-value=5e-13 Score=90.90 Aligned_cols=103 Identities=23% Similarity=0.177 Sum_probs=61.8
Q ss_pred CCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEEc
Q 045673 28 NSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRL 107 (132)
Q Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~l 107 (132)
.+++.|++++|.+.+..+..+..+++|+.|++++|.+....+..+..+++|+.+++++|.+.+..|..+..+++|+.|++
T Consensus 129 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 208 (285)
T 1ozn_A 129 AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208 (285)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeC
Confidence 35566666666665444444555666666666666666444444556666666666666666555666666667777777
Q ss_pred cCccccccCchHHHHhccCCcee
Q 045673 108 NNNNLTGRIPREVIQLIINGSLR 130 (132)
Q Consensus 108 ~~n~~~~~~p~~~~~l~~~~~L~ 130 (132)
++|.+++..+..+..+..++.|.
T Consensus 209 ~~n~l~~~~~~~~~~l~~L~~L~ 231 (285)
T 1ozn_A 209 FANNLSALPTEALAPLRALQYLR 231 (285)
T ss_dssp CSSCCSCCCHHHHTTCTTCCEEE
T ss_pred CCCcCCcCCHHHcccCcccCEEe
Confidence 77777643334455555555554
No 38
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.44 E-value=5.5e-13 Score=93.78 Aligned_cols=93 Identities=20% Similarity=0.244 Sum_probs=63.3
Q ss_pred CCCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEE
Q 045673 27 ENSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMR 106 (132)
Q Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~ 106 (132)
..+|+.|++++|.+.+..+..|..++.|+.|++++|.+....+..+..+++|+.+++++|.+....|..|..+++|+.|+
T Consensus 63 l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~ 142 (361)
T 2xot_A 63 LTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLY 142 (361)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred ccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEE
Confidence 35677777777777766556677777777777777777755555666777777777777777655556666777777777
Q ss_pred ccCccccccCchHH
Q 045673 107 LNNNNLTGRIPREV 120 (132)
Q Consensus 107 l~~n~~~~~~p~~~ 120 (132)
+++|.++ .+|..+
T Consensus 143 L~~N~l~-~l~~~~ 155 (361)
T 2xot_A 143 LSQNQIS-RFPVEL 155 (361)
T ss_dssp CCSSCCC-SCCGGG
T ss_pred CCCCcCC-eeCHHH
Confidence 7777776 455433
No 39
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.43 E-value=3.3e-13 Score=97.28 Aligned_cols=104 Identities=18% Similarity=0.161 Sum_probs=88.1
Q ss_pred CCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEEc
Q 045673 28 NSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRL 107 (132)
Q Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~l 107 (132)
.+++.|++++|.+.+..+..|..+++|+.|++++|.+.+..+..+..+++|+.+++++|.+....+..+..+++|+.|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 37899999999999888889999999999999999999888888999999999999999998554456888999999999
Q ss_pred cCccccccCchHHHHhccCCceee
Q 045673 108 NNNNLTGRIPREVIQLIINGSLRI 131 (132)
Q Consensus 108 ~~n~~~~~~p~~~~~l~~~~~L~~ 131 (132)
++|.++...+..+..+..++.|.+
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l 178 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDL 178 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCCcceeCHhHHhcCCcccEEeC
Confidence 999999544456666666666543
No 40
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.43 E-value=4.9e-13 Score=84.96 Aligned_cols=99 Identities=25% Similarity=0.255 Sum_probs=82.9
Q ss_pred eEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEEccC
Q 045673 30 VIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRLNN 109 (132)
Q Consensus 30 l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~l~~ 109 (132)
.+.+++++|.+.. +|..+ ...++.|++++|.+.+..+..+..+++|+.+++++|.+....+..+..+++|+.|++++
T Consensus 11 ~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 4689999999985 56554 48899999999999977788899999999999999999955445678999999999999
Q ss_pred ccccccCchHHHHhccCCceee
Q 045673 110 NNLTGRIPREVIQLIINGSLRI 131 (132)
Q Consensus 110 n~~~~~~p~~~~~l~~~~~L~~ 131 (132)
|++++..+..+..+..++.|.+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEEC
T ss_pred CccCEeCHHHhcCCCCCCEEEe
Confidence 9999544456778888877764
No 41
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.43 E-value=2.9e-13 Score=100.43 Aligned_cols=102 Identities=20% Similarity=0.193 Sum_probs=51.2
Q ss_pred CeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEEcc
Q 045673 29 SVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRLN 108 (132)
Q Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~l~ 108 (132)
+++.|++++|.+.+..|..|..+.+|+.|++++|.+.+..|..+..+++|+++++++|.+....+..++.+++|++|+++
T Consensus 57 ~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 136 (606)
T 3vq2_A 57 ELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVA 136 (606)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECC
T ss_pred cCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCC
Confidence 34444444444444334444444455555555554443444444455555555555555443222345555555566666
Q ss_pred Cccccc-cCchHHHHhccCCcee
Q 045673 109 NNNLTG-RIPREVIQLIINGSLR 130 (132)
Q Consensus 109 ~n~~~~-~~p~~~~~l~~~~~L~ 130 (132)
+|.+++ .+|..++.+..++.|.
T Consensus 137 ~n~l~~~~lp~~~~~l~~L~~L~ 159 (606)
T 3vq2_A 137 HNFIHSCKLPAYFSNLTNLVHVD 159 (606)
T ss_dssp SSCCCCCCCCGGGGTCTTCCEEE
T ss_pred CCcccceechHhHhhcCCCCEEE
Confidence 665553 3466666666665554
No 42
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.43 E-value=5.1e-13 Score=91.49 Aligned_cols=99 Identities=25% Similarity=0.276 Sum_probs=51.0
Q ss_pred CeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCc-ccCCCCCCCEEEc
Q 045673 29 SVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPA-SIGNLRSLKFMRL 107 (132)
Q Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~-~l~~l~~L~~l~l 107 (132)
+++.|++++|.+++..+..|..+++|+.|++++|.+....+..+..+++|+.+++++|.++ .+|. .+..+++|+.|++
T Consensus 101 ~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~L 179 (290)
T 1p9a_G 101 ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLL 179 (290)
T ss_dssp TCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS-CCCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC-ccCHHHhcCcCCCCEEEC
Confidence 4555555555555444444555555555555555555443344445555555555555555 2332 3445555556666
Q ss_pred cCccccccCchHHHHhccCCce
Q 045673 108 NNNNLTGRIPREVIQLIINGSL 129 (132)
Q Consensus 108 ~~n~~~~~~p~~~~~l~~~~~L 129 (132)
++|+++ .+|..++....++.|
T Consensus 180 ~~N~l~-~ip~~~~~~~~L~~l 200 (290)
T 1p9a_G 180 QENSLY-TIPKGFFGSHLLPFA 200 (290)
T ss_dssp CSSCCC-CCCTTTTTTCCCSEE
T ss_pred CCCcCC-ccChhhcccccCCeE
Confidence 555555 455555554444443
No 43
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.43 E-value=4.6e-13 Score=99.19 Aligned_cols=104 Identities=19% Similarity=0.208 Sum_probs=86.6
Q ss_pred CCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEEc
Q 045673 28 NSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRL 107 (132)
Q Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~l 107 (132)
.+++.|++++|.+++..+..|..+++|+.|++++|.+....+..+..+++|+++++++|.++...+..|+.+++|+.|++
T Consensus 76 ~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~L 155 (635)
T 4g8a_A 76 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 155 (635)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeecc
Confidence 47899999999998777778889999999999999998666677888999999999999998544456889999999999
Q ss_pred cCccccc-cCchHHHHhccCCceee
Q 045673 108 NNNNLTG-RIPREVIQLIINGSLRI 131 (132)
Q Consensus 108 ~~n~~~~-~~p~~~~~l~~~~~L~~ 131 (132)
++|.+++ ..|..+..+..++.|.+
T Consensus 156 s~N~l~~~~~~~~~~~l~~L~~L~L 180 (635)
T 4g8a_A 156 AHNLIQSFKLPEYFSNLTNLEHLDL 180 (635)
T ss_dssp CSSCCCCCCCCGGGGGCTTCCEEEC
T ss_pred ccCccccCCCchhhccchhhhhhcc
Confidence 9998874 45777777777777654
No 44
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.43 E-value=3.9e-13 Score=96.56 Aligned_cols=104 Identities=20% Similarity=0.119 Sum_probs=70.0
Q ss_pred CCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEEc
Q 045673 28 NSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRL 107 (132)
Q Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~l 107 (132)
.+++.|++++|.+.+..+..|..++.|+.|++++|.+.+..+..+..+++|+.+++++|.+.+..|..+..+++|+.|++
T Consensus 299 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 378 (455)
T 3v47_A 299 TDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELAL 378 (455)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEEC
Confidence 46777777777777666666777777777777777776566666667777777777777776555666777777777777
Q ss_pred cCccccccCchHHHHhccCCceee
Q 045673 108 NNNNLTGRIPREVIQLIINGSLRI 131 (132)
Q Consensus 108 ~~n~~~~~~p~~~~~l~~~~~L~~ 131 (132)
++|++++..+..+..+..++.|.+
T Consensus 379 ~~N~l~~~~~~~~~~l~~L~~L~l 402 (455)
T 3v47_A 379 DTNQLKSVPDGIFDRLTSLQKIWL 402 (455)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred CCCccccCCHhHhccCCcccEEEc
Confidence 777777433334455556655543
No 45
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.42 E-value=1.6e-13 Score=85.09 Aligned_cols=102 Identities=22% Similarity=0.278 Sum_probs=87.6
Q ss_pred CCeEEEEcCCCCcc-ccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEE
Q 045673 28 NSVIRVDLGNAGLS-GPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMR 106 (132)
Q Consensus 28 ~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~ 106 (132)
++++.|++++|.+. +.+|..+..++.|+.|++++|.+.+. ..+..+++|+.+++++|.+.+..|..+..+++|+.++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 57999999999998 67888889999999999999999855 7788899999999999999865777777899999999
Q ss_pred ccCcccccc-CchHHHHhccCCceee
Q 045673 107 LNNNNLTGR-IPREVIQLIINGSLRI 131 (132)
Q Consensus 107 l~~n~~~~~-~p~~~~~l~~~~~L~~ 131 (132)
+++|.+++. .+..+..++.++.|.+
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l 120 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDL 120 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEEC
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeC
Confidence 999999942 2377788887777754
No 46
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.42 E-value=4e-13 Score=98.08 Aligned_cols=101 Identities=20% Similarity=0.138 Sum_probs=82.9
Q ss_pred CCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEEc
Q 045673 28 NSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRL 107 (132)
Q Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~l 107 (132)
.+++.|++++|.+.+..+..|..+++|+.|++++|.+.+..|..+..+++|+++++++|.++ .+|.. .+++|++|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEec
Confidence 67888899999888777778888888999999998888777788888888999999888888 56655 7888888888
Q ss_pred cCccccc-cCchHHHHhccCCceee
Q 045673 108 NNNNLTG-RIPREVIQLIINGSLRI 131 (132)
Q Consensus 108 ~~n~~~~-~~p~~~~~l~~~~~L~~ 131 (132)
++|.+++ .+|..++.+..++.|.+
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L 122 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGL 122 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEE
T ss_pred cCCccccccchhhhccCCcceEEEe
Confidence 8888885 46788888887777754
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.42 E-value=6e-13 Score=92.38 Aligned_cols=114 Identities=23% Similarity=0.244 Sum_probs=91.9
Q ss_pred CCCCceeeeeCCC----------CCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcc
Q 045673 15 NPCTWFHVTCNSE----------NSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLF 84 (132)
Q Consensus 15 ~~c~~~~~~~~~~----------~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls 84 (132)
+.|.+..+.|... .+++.|++++|.+.+..+..|..++.|+.|++++|.+.+..+..+..+++|+.++++
T Consensus 31 c~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 31 CHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp CEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred CcccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 4577888888532 378999999999998777789999999999999999998888889999999999999
Q ss_pred cccccccCCcccCCCCCCCEEEccCccccccCchHHHHhccCCceee
Q 045673 85 NNQLSGAIPASIGNLRSLKFMRLNNNNLTGRIPREVIQLIINGSLRI 131 (132)
Q Consensus 85 ~n~~~~~~p~~l~~l~~L~~l~l~~n~~~~~~p~~~~~l~~~~~L~~ 131 (132)
+|.+. .+|..+. ++|+.|++++|.+++..+..+..+..++.|.+
T Consensus 111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l 154 (332)
T 2ft3_A 111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEM 154 (332)
T ss_dssp SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEEC
T ss_pred CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEEC
Confidence 99988 6676554 78888888888888444455666666666643
No 48
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.42 E-value=5.8e-13 Score=98.81 Aligned_cols=103 Identities=22% Similarity=0.178 Sum_probs=69.1
Q ss_pred CCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEEc
Q 045673 28 NSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRL 107 (132)
Q Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~l 107 (132)
.+++.|++++|.+.+..+..|..+++|+.|++++|.+.+..+..+..+++|+++++++|.+....|..++.+++|++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 35677777777776666666677777777777777776666666667777777777777776555666777777777777
Q ss_pred cCccccccCchHHHHhccCCcee
Q 045673 108 NNNNLTGRIPREVIQLIINGSLR 130 (132)
Q Consensus 108 ~~n~~~~~~p~~~~~l~~~~~L~ 130 (132)
++|.+++..+..+..+..++.|.
T Consensus 112 ~~n~l~~~~~~~~~~l~~L~~L~ 134 (606)
T 3vq2_A 112 VETKLASLESFPIGQLITLKKLN 134 (606)
T ss_dssp TTSCCCCSSSSCCTTCTTCCEEE
T ss_pred cCCccccccccccCCCCCCCEEe
Confidence 77777644445566666665554
No 49
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.42 E-value=3.6e-13 Score=96.75 Aligned_cols=104 Identities=21% Similarity=0.233 Sum_probs=94.3
Q ss_pred CCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEEc
Q 045673 28 NSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRL 107 (132)
Q Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~l 107 (132)
.+++.|++++|.+.+..+..+..++.|+.|++++|.+.+..+..+..+++|+.+++++|.+.+..|..+..+++|+.|++
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 354 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL 354 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence 47899999999999888888999999999999999999888888999999999999999998666778999999999999
Q ss_pred cCccccccCchHHHHhccCCceee
Q 045673 108 NNNNLTGRIPREVIQLIINGSLRI 131 (132)
Q Consensus 108 ~~n~~~~~~p~~~~~l~~~~~L~~ 131 (132)
++|.+++..|..+..+..++.|.+
T Consensus 355 s~N~l~~~~~~~~~~l~~L~~L~L 378 (455)
T 3v47_A 355 SYNHIRALGDQSFLGLPNLKELAL 378 (455)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCcccccChhhccccccccEEEC
Confidence 999999777888888888888764
No 50
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.41 E-value=8.6e-13 Score=89.36 Aligned_cols=102 Identities=20% Similarity=0.205 Sum_probs=48.0
Q ss_pred CeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEEcc
Q 045673 29 SVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRLN 108 (132)
Q Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~l~ 108 (132)
+++.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.+++++|.+....+..+..+++|+.|+++
T Consensus 53 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 132 (276)
T 2z62_A 53 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA 132 (276)
T ss_dssp TCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECC
T ss_pred CCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECc
Confidence 44445555554444333344444555555555555444444444444444454444444442222234455555555555
Q ss_pred Cccccc-cCchHHHHhccCCcee
Q 045673 109 NNNLTG-RIPREVIQLIINGSLR 130 (132)
Q Consensus 109 ~n~~~~-~~p~~~~~l~~~~~L~ 130 (132)
+|.+++ .+|..+..+..++.|.
T Consensus 133 ~n~l~~~~l~~~~~~l~~L~~L~ 155 (276)
T 2z62_A 133 HNLIQSFKLPEYFSNLTNLEHLD 155 (276)
T ss_dssp SSCCCCCCCCGGGGGCTTCCEEE
T ss_pred CCccceecCchhhccCCCCCEEE
Confidence 555553 1345555554444443
No 51
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.41 E-value=1.1e-12 Score=88.83 Aligned_cols=86 Identities=24% Similarity=0.244 Sum_probs=39.7
Q ss_pred CCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEEc
Q 045673 28 NSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRL 107 (132)
Q Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~l 107 (132)
.+++.|++++|.+....+..|..++.|+.|++++|.+....+..+..+++|+.+++++|.+....+..+..+++|+.|++
T Consensus 61 ~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 140 (270)
T 2o6q_A 61 TKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSL 140 (270)
T ss_dssp TTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEEC
Confidence 34555555555555433333444555555555555554333333344444455544444444332233344444444444
Q ss_pred cCcccc
Q 045673 108 NNNNLT 113 (132)
Q Consensus 108 ~~n~~~ 113 (132)
++|.++
T Consensus 141 s~n~l~ 146 (270)
T 2o6q_A 141 GYNELQ 146 (270)
T ss_dssp CSSCCC
T ss_pred CCCcCC
Confidence 444444
No 52
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.41 E-value=8e-13 Score=95.00 Aligned_cols=113 Identities=20% Similarity=0.223 Sum_probs=90.5
Q ss_pred ceeeeeCCC----------CCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccc
Q 045673 19 WFHVTCNSE----------NSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQL 88 (132)
Q Consensus 19 ~~~~~~~~~----------~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~ 88 (132)
+..+.|... .+++.|++++|.+....+..|..+++|+.|++++|.+....+..+..+++|+.+++++|.+
T Consensus 45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l 124 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124 (440)
T ss_dssp SCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCC
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcC
Confidence 456777432 3688999999999987778899999999999999999877778888999999999999999
Q ss_pred cccCCcccCCCCCCCEEEccCccccccCchHHHHhccCCceee
Q 045673 89 SGAIPASIGNLRSLKFMRLNNNNLTGRIPREVIQLIINGSLRI 131 (132)
Q Consensus 89 ~~~~p~~l~~l~~L~~l~l~~n~~~~~~p~~~~~l~~~~~L~~ 131 (132)
+...+..+..+++|+.|++++|.++...+..+..+..++.|.+
T Consensus 125 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l 167 (440)
T 3zyj_A 125 TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDL 167 (440)
T ss_dssp SSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred CeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCC
Confidence 8444446888999999999999988544456666666666643
No 53
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.40 E-value=4.3e-13 Score=103.30 Aligned_cols=114 Identities=22% Similarity=0.192 Sum_probs=58.2
Q ss_pred CCCceeeeeCCCCCeEEEEcCCCCccccCccccccCCCCcEEEeeeC-------------------------cceecCCc
Q 045673 16 PCTWFHVTCNSENSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKN-------------------------NISGSIPS 70 (132)
Q Consensus 16 ~c~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~-------------------------~~~~~~~~ 70 (132)
.|.+..|++ ...+++.|++++|.+.+..+..|..+.+|+.|++++| .+.+..|.
T Consensus 13 ~~~L~~vP~-lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~ 91 (844)
T 3j0a_A 13 FCNLTQVPQ-VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD 91 (844)
T ss_dssp CCCSSCCCS-SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred CCCCCCCCC-CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh
Confidence 344555555 3456677777777766555445555555555555554 44444444
Q ss_pred cccCCcCCcEEEcccccccccCCcc--cCCCCCCCEEEccCccccccCc-hHHHHhccCCcee
Q 045673 71 EIGNLKKLISLGLFNNQLSGAIPAS--IGNLRSLKFMRLNNNNLTGRIP-REVIQLIINGSLR 130 (132)
Q Consensus 71 ~~~~l~~L~~l~ls~n~~~~~~p~~--l~~l~~L~~l~l~~n~~~~~~p-~~~~~l~~~~~L~ 130 (132)
.+..+++|+.+++++|.+.+..|.. +..+++|+.|++++|.+++..+ ..+..+..++.|.
T Consensus 92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~ 154 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSID 154 (844)
T ss_dssp SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEE
T ss_pred HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEE
Confidence 4444555555555555544333332 4455555555555555553322 3455555555443
No 54
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.40 E-value=1.4e-12 Score=90.46 Aligned_cols=113 Identities=25% Similarity=0.262 Sum_probs=85.9
Q ss_pred CCCCceeeeeCCC----------CCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcc
Q 045673 15 NPCTWFHVTCNSE----------NSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLF 84 (132)
Q Consensus 15 ~~c~~~~~~~~~~----------~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls 84 (132)
+.|.+..+.|... ..++.|++++|.+.+..+..|..++.|+.|++++|.+.+..|..+..+++|+.++++
T Consensus 29 c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 29 CQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp CEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 5677888887522 478999999999998777789999999999999999997778889999999999999
Q ss_pred cccccccCCcccCCCCCCCEEEccCccccccCchHHHHhccCCcee
Q 045673 85 NNQLSGAIPASIGNLRSLKFMRLNNNNLTGRIPREVIQLIINGSLR 130 (132)
Q Consensus 85 ~n~~~~~~p~~l~~l~~L~~l~l~~n~~~~~~p~~~~~l~~~~~L~ 130 (132)
+|.++ .+|..+. ++|+.|++++|.+++..+..+..+..++.|.
T Consensus 109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 151 (330)
T 1xku_A 109 KNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVE 151 (330)
T ss_dssp SSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEE
T ss_pred CCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEE
Confidence 99988 5665443 5666666666666644444455555444443
No 55
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.40 E-value=4.3e-13 Score=84.72 Aligned_cols=101 Identities=25% Similarity=0.317 Sum_probs=83.9
Q ss_pred CCeEEEEcCCCCcc-ccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEE
Q 045673 28 NSVIRVDLGNAGLS-GPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMR 106 (132)
Q Consensus 28 ~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~ 106 (132)
.+++.|++++|.+. +.+|..+..++.|+.|++++|.+... ..+..+++|+.+++++|.+.+..|..+..+++|+.|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 67999999999997 66777788899999999999998855 6778899999999999999865777777789999999
Q ss_pred ccCccccccCc--hHHHHhccCCceee
Q 045673 107 LNNNNLTGRIP--REVIQLIINGSLRI 131 (132)
Q Consensus 107 l~~n~~~~~~p--~~~~~l~~~~~L~~ 131 (132)
+++|.++ .+| ..+..+..++.|.+
T Consensus 102 Ls~N~l~-~~~~~~~l~~l~~L~~L~l 127 (168)
T 2ell_A 102 LSGNKLK-DISTLEPLKKLECLKSLDL 127 (168)
T ss_dssp CBSSSCC-SSGGGGGGSSCSCCCEEEC
T ss_pred ccCCccC-cchhHHHHhcCCCCCEEEe
Confidence 9999998 444 66777777776654
No 56
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.40 E-value=1.1e-12 Score=83.59 Aligned_cols=98 Identities=21% Similarity=0.197 Sum_probs=81.0
Q ss_pred EEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEEccCc
Q 045673 31 IRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRLNNN 110 (132)
Q Consensus 31 ~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~l~~n 110 (132)
+.+++++|.+. .+|..+ ...++.|++++|.+.+..+..+..+++|+.+++++|.+++..+..+..+++|+.|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 67899999997 456655 389999999999999787888999999999999999999543345789999999999999
Q ss_pred cccccCchHHHHhccCCceee
Q 045673 111 NLTGRIPREVIQLIINGSLRI 131 (132)
Q Consensus 111 ~~~~~~p~~~~~l~~~~~L~~ 131 (132)
++++..+..+..+..++.|.+
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEEC
T ss_pred ccceeCHHHhccccCCCEEEe
Confidence 999443345777878777754
No 57
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.39 E-value=7.9e-13 Score=89.54 Aligned_cols=104 Identities=19% Similarity=0.095 Sum_probs=90.5
Q ss_pred CCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEEc
Q 045673 28 NSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRL 107 (132)
Q Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~l 107 (132)
.+++.|++++|.+.+..+..+..++.|+.|++++|.+....+..+..+++|+.+++++|.+....+..+..+++|+.|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 46999999999999777778999999999999999999777778899999999999999998666678999999999999
Q ss_pred cCccccccCchHHHHhccCCceee
Q 045673 108 NNNNLTGRIPREVIQLIINGSLRI 131 (132)
Q Consensus 108 ~~n~~~~~~p~~~~~l~~~~~L~~ 131 (132)
++|.+.+..+..+..+..++.|.+
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l 131 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNV 131 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEEC
T ss_pred CCCCccccCchhcccCCCCCEEEC
Confidence 999999554446777777777754
No 58
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.39 E-value=6.8e-13 Score=85.95 Aligned_cols=99 Identities=20% Similarity=0.269 Sum_probs=57.7
Q ss_pred CCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEccccc-ccccCCcccCCCCCCCEEE
Q 045673 28 NSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQ-LSGAIPASIGNLRSLKFMR 106 (132)
Q Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~-~~~~~p~~l~~l~~L~~l~ 106 (132)
.+++.|++++|.+.+..+..+..++.|+.|++++|.+.+..+..+..+++|+.+++++|. +. .+| .+..+++|+.|+
T Consensus 88 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~ 165 (197)
T 4ezg_A 88 SNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLN 165 (197)
T ss_dssp TTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEE
T ss_pred CCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEE
Confidence 456666666666655455556666666666666666654455555566666666666665 44 333 455666666666
Q ss_pred ccCccccccCchHHHHhccCCcee
Q 045673 107 LNNNNLTGRIPREVIQLIINGSLR 130 (132)
Q Consensus 107 l~~n~~~~~~p~~~~~l~~~~~L~ 130 (132)
+++|.++ .++ .+..++.++.|.
T Consensus 166 l~~n~i~-~~~-~l~~l~~L~~L~ 187 (197)
T 4ezg_A 166 IQFDGVH-DYR-GIEDFPKLNQLY 187 (197)
T ss_dssp CTTBCCC-CCT-TGGGCSSCCEEE
T ss_pred CCCCCCc-ChH-HhccCCCCCEEE
Confidence 6666666 333 455555555554
No 59
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.39 E-value=6.6e-13 Score=98.51 Aligned_cols=104 Identities=16% Similarity=0.084 Sum_probs=83.5
Q ss_pred CCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEEc
Q 045673 28 NSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRL 107 (132)
Q Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~l 107 (132)
.+++.|++++|.+++..+..|..+++|+.|++++|.+....|..+..+++|+.+++++|.+.+..|..++.+++|++|++
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 36888999999998777788888999999999999888777888888888999999888887666777888888888888
Q ss_pred cCccccccCchHHHHhccCCceee
Q 045673 108 NNNNLTGRIPREVIQLIINGSLRI 131 (132)
Q Consensus 108 ~~n~~~~~~p~~~~~l~~~~~L~~ 131 (132)
++|.+++..|..+..+..++.|.+
T Consensus 113 ~~n~i~~l~~~~~~~l~~L~~L~L 136 (606)
T 3t6q_A 113 IQTGISSIDFIPLHNQKTLESLYL 136 (606)
T ss_dssp TTSCCSCGGGSCCTTCTTCCEEEC
T ss_pred cccCcccCCcchhccCCcccEEEC
Confidence 888888543556666666666543
No 60
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.38 E-value=2e-12 Score=90.20 Aligned_cols=97 Identities=21% Similarity=0.251 Sum_probs=79.8
Q ss_pred CCCceeeeeCCC------------CCeEEEEcCC-CCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEE
Q 045673 16 PCTWFHVTCNSE------------NSVIRVDLGN-AGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLG 82 (132)
Q Consensus 16 ~c~~~~~~~~~~------------~~l~~L~l~~-n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ 82 (132)
.|.+..+.|... .+|+.|+|++ |.+.+..+..|..+.+|+.|++++|.+.+..+..+..+++|+.|+
T Consensus 7 ~C~~~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 86 (347)
T 2ifg_A 7 PHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN 86 (347)
T ss_dssp CSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred cccCCEEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEe
Confidence 688888888643 3488999996 999887778889999999999999999988888888999999999
Q ss_pred cccccccccCCc-ccCCCCCCCEEEccCccccc
Q 045673 83 LFNNQLSGAIPA-SIGNLRSLKFMRLNNNNLTG 114 (132)
Q Consensus 83 ls~n~~~~~~p~-~l~~l~~L~~l~l~~n~~~~ 114 (132)
|++|.+. .+|. .+..+. |+.|++.+|.+..
T Consensus 87 l~~N~l~-~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 87 LSFNALE-SLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp CCSSCCS-CCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCCCccc-eeCHHHcccCC-ceEEEeeCCCccC
Confidence 9999998 4555 444444 9999999999884
No 61
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.38 E-value=1.3e-12 Score=89.56 Aligned_cols=94 Identities=17% Similarity=0.208 Sum_probs=39.9
Q ss_pred CeEEEEcCCCCccc-cCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEEc
Q 045673 29 SVIRVDLGNAGLSG-PLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRL 107 (132)
Q Consensus 29 ~l~~L~l~~n~l~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~l 107 (132)
+++.|++++|.+.+ ..|..+..++.|+.|++++|.+.+..+..+..+++|+.+++++|.+.+..+..+..+++|+.|++
T Consensus 151 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 230 (306)
T 2z66_A 151 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY 230 (306)
T ss_dssp TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEEC
T ss_pred CCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeEC
Confidence 34444444444432 23333444444444444444444333444444444444444444444222223444444444444
Q ss_pred cCccccccCchHHHH
Q 045673 108 NNNNLTGRIPREVIQ 122 (132)
Q Consensus 108 ~~n~~~~~~p~~~~~ 122 (132)
++|.+++..|..+..
T Consensus 231 ~~N~l~~~~~~~~~~ 245 (306)
T 2z66_A 231 SLNHIMTSKKQELQH 245 (306)
T ss_dssp TTSCCCBCSSSSCCC
T ss_pred CCCCCcccCHHHHHh
Confidence 444444433333333
No 62
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.38 E-value=1.8e-12 Score=88.71 Aligned_cols=102 Identities=25% Similarity=0.218 Sum_probs=75.9
Q ss_pred CCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEEc
Q 045673 28 NSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRL 107 (132)
Q Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~l 107 (132)
.+++.|++++|.+. .+|..+..++.|+.|++++|.++...+..+..+++|+.+++++|.+....+..+..+++|+.|++
T Consensus 77 ~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 155 (290)
T 1p9a_G 77 PVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155 (290)
T ss_dssp TTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEEC
Confidence 56777777777776 45666777888888888888888666677788888888888888888444445678888888888
Q ss_pred cCccccccCch-HHHHhccCCceee
Q 045673 108 NNNNLTGRIPR-EVIQLIINGSLRI 131 (132)
Q Consensus 108 ~~n~~~~~~p~-~~~~l~~~~~L~~ 131 (132)
++|+++ .+|. .+..+..++.|.+
T Consensus 156 ~~N~l~-~l~~~~~~~l~~L~~L~L 179 (290)
T 1p9a_G 156 ANNNLT-ELPAGLLNGLENLDTLLL 179 (290)
T ss_dssp TTSCCS-CCCTTTTTTCTTCCEEEC
T ss_pred CCCcCC-ccCHHHhcCcCCCCEEEC
Confidence 888888 4554 4455666666653
No 63
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.38 E-value=5.6e-13 Score=84.92 Aligned_cols=99 Identities=21% Similarity=0.217 Sum_probs=75.4
Q ss_pred CCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCc--ccCCCCCCCEE
Q 045673 28 NSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPA--SIGNLRSLKFM 105 (132)
Q Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~--~l~~l~~L~~l 105 (132)
++++.|++++|.+.+. +.+..++.|+.|++++|.+....+..+..+++|+.+++++|.+. .+|. .+..+++|+.+
T Consensus 42 ~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L 118 (176)
T 1a9n_A 42 DQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYL 118 (176)
T ss_dssp TCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEE
T ss_pred CCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEE
Confidence 3788888888888764 56778888888888888888554444477888888888888886 5565 67788888888
Q ss_pred EccCccccccCchH----HHHhccCCcee
Q 045673 106 RLNNNNLTGRIPRE----VIQLIINGSLR 130 (132)
Q Consensus 106 ~l~~n~~~~~~p~~----~~~l~~~~~L~ 130 (132)
++++|.+. .+|.. +..++.++.|.
T Consensus 119 ~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld 146 (176)
T 1a9n_A 119 CILRNPVT-NKKHYRLYVIYKVPQVRVLD 146 (176)
T ss_dssp ECCSSGGG-GSTTHHHHHHHHCTTCSEET
T ss_pred EecCCCCC-CcHhHHHHHHHHCCccceeC
Confidence 88888888 56664 66776666553
No 64
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.38 E-value=1.8e-12 Score=94.55 Aligned_cols=114 Identities=18% Similarity=0.131 Sum_probs=80.5
Q ss_pred CCCCceeeeeCCCCCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCcccc-CCcCCcEEEcccccccccCC
Q 045673 15 NPCTWFHVTCNSENSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIG-NLKKLISLGLFNNQLSGAIP 93 (132)
Q Consensus 15 ~~c~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~-~l~~L~~l~ls~n~~~~~~p 93 (132)
..|.+.++.+...++++.|++++|.+.+..|..+..++.|+.|++++|.+++..+..+. .+++|+.+++++|.+++. |
T Consensus 107 ~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~ 185 (487)
T 3oja_A 107 ANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K 185 (487)
T ss_dssp CSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E
T ss_pred cCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-c
Confidence 45666677776667788888888888877777777888888888888888876666664 577777777777777643 2
Q ss_pred cccCCCCCCCEEEccCccccccCchHHHHhccCCceee
Q 045673 94 ASIGNLRSLKFMRLNNNNLTGRIPREVIQLIINGSLRI 131 (132)
Q Consensus 94 ~~l~~l~~L~~l~l~~n~~~~~~p~~~~~l~~~~~L~~ 131 (132)
. +..+++|+.|++++|.+++ +|..+..+..++.|.+
T Consensus 186 ~-~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~L 221 (487)
T 3oja_A 186 G-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISL 221 (487)
T ss_dssp C-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEEC
T ss_pred c-cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEe
Confidence 2 3356777777777777774 4444666666665543
No 65
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.38 E-value=9.3e-13 Score=87.54 Aligned_cols=98 Identities=19% Similarity=0.210 Sum_probs=76.7
Q ss_pred CCeEEEEcCCCCccccCccccccCCCCcEEEeeeCc-ceecCCccccCCcCCcEEEccc-ccccccCCcccCCCCCCCEE
Q 045673 28 NSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNN-ISGSIPSEIGNLKKLISLGLFN-NQLSGAIPASIGNLRSLKFM 105 (132)
Q Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~-~~~~~~~~~~~l~~L~~l~ls~-n~~~~~~p~~l~~l~~L~~l 105 (132)
.+++.|++++|.+.+..+..|..+++|+.+++++|. +....+..+..+++|+.+++++ |.++...+..+..+++|+.|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 478889999999887666678888999999999986 7766666778888899999987 88885544577788888888
Q ss_pred EccCccccccCchHHHHhccCC
Q 045673 106 RLNNNNLTGRIPREVIQLIING 127 (132)
Q Consensus 106 ~l~~n~~~~~~p~~~~~l~~~~ 127 (132)
++++|.++ .+|. +..+..++
T Consensus 111 ~l~~n~l~-~lp~-~~~l~~L~ 130 (239)
T 2xwt_C 111 GIFNTGLK-MFPD-LTKVYSTD 130 (239)
T ss_dssp EEEEECCC-SCCC-CTTCCBCC
T ss_pred eCCCCCCc-cccc-cccccccc
Confidence 88888888 4665 55555554
No 66
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.37 E-value=1.3e-12 Score=94.51 Aligned_cols=102 Identities=19% Similarity=0.135 Sum_probs=55.5
Q ss_pred CCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEEc
Q 045673 28 NSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRL 107 (132)
Q Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~l 107 (132)
.+++.|++++|.+.+..|..|..+++|+.|++++|.+....+..+..+++|+.+++++|.+....+..+..+++|+.|++
T Consensus 56 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 135 (477)
T 2id5_A 56 PHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEV 135 (477)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEE
T ss_pred CCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEEC
Confidence 45666666666666555556666666666666666665333344455566666666666555444444555555555555
Q ss_pred cCccccccCchHHHHhccCCce
Q 045673 108 NNNNLTGRIPREVIQLIINGSL 129 (132)
Q Consensus 108 ~~n~~~~~~p~~~~~l~~~~~L 129 (132)
++|.+.+..+..+..+..++.|
T Consensus 136 ~~n~l~~~~~~~~~~l~~L~~L 157 (477)
T 2id5_A 136 GDNDLVYISHRAFSGLNSLEQL 157 (477)
T ss_dssp CCTTCCEECTTSSTTCTTCCEE
T ss_pred CCCccceeChhhccCCCCCCEE
Confidence 5555543333444444444433
No 67
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.37 E-value=1.6e-12 Score=96.74 Aligned_cols=102 Identities=22% Similarity=0.160 Sum_probs=73.6
Q ss_pred CeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCc-ccCCCCCCCEEEc
Q 045673 29 SVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPA-SIGNLRSLKFMRL 107 (132)
Q Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~-~l~~l~~L~~l~l 107 (132)
+|+.|++++|.+.+..+..|..++.|+.|++++|.+.+..+..+..+++|+.+++++|.+. .+|. .++.+++|++|++
T Consensus 76 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L 154 (597)
T 3oja_B 76 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSM 154 (597)
T ss_dssp CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred CCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC-CCCHHHhccCCCCCEEEe
Confidence 4667777777777666667777778888888888777666666677778888888888777 4444 3577788888888
Q ss_pred cCccccccCchHHHHhccCCceee
Q 045673 108 NNNNLTGRIPREVIQLIINGSLRI 131 (132)
Q Consensus 108 ~~n~~~~~~p~~~~~l~~~~~L~~ 131 (132)
++|.+++..|..+..+..++.|.+
T Consensus 155 s~N~l~~~~~~~~~~l~~L~~L~L 178 (597)
T 3oja_B 155 SNNNLERIEDDTFQATTSLQNLQL 178 (597)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred eCCcCCCCChhhhhcCCcCcEEEC
Confidence 888887666666777776666653
No 68
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.37 E-value=1.4e-12 Score=98.03 Aligned_cols=100 Identities=20% Similarity=0.156 Sum_probs=52.6
Q ss_pred CeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCc-ccCCCCCCCEEEc
Q 045673 29 SVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPA-SIGNLRSLKFMRL 107 (132)
Q Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~-~l~~l~~L~~l~l 107 (132)
+++.|++++|.+.+..+..|..++.|+.|++++|.+.+..+..+..+++|+.+++++|.+. .+|. .+..+++|++|++
T Consensus 26 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 26 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEEC
T ss_pred CCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC-ccChhhhccCCCCCEEEC
Confidence 5666666666666554455555666666666655555444444555555555555555555 2332 3555555555555
Q ss_pred cCccccccCchHHHHhccCCce
Q 045673 108 NNNNLTGRIPREVIQLIINGSL 129 (132)
Q Consensus 108 ~~n~~~~~~p~~~~~l~~~~~L 129 (132)
++|.+++..|..+..+..++.|
T Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L 126 (680)
T 1ziw_A 105 MSNSIQKIKNNPFVKQKNLITL 126 (680)
T ss_dssp CSSCCCCCCSCTTTTCTTCCEE
T ss_pred CCCccCccChhHccccCCCCEE
Confidence 5555553333444444444444
No 69
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.37 E-value=1.5e-12 Score=96.63 Aligned_cols=99 Identities=25% Similarity=0.273 Sum_probs=75.4
Q ss_pred CCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccC-CcccCCCCCCCEEE
Q 045673 28 NSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAI-PASIGNLRSLKFMR 106 (132)
Q Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~-p~~l~~l~~L~~l~ 106 (132)
.+++.|++++|.+. .+|..+..++.|+.|++++|.+++ +| .+..+++|+.+++++|.+++.. |..++.+++|+.|+
T Consensus 463 ~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~ 539 (567)
T 1dce_A 463 LLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLN 539 (567)
T ss_dssp TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEE
T ss_pred ccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEE
Confidence 57888888888888 567788888888888888888884 45 7788888888888888888554 78888888888888
Q ss_pred ccCccccccCch---HHHHhccCCce
Q 045673 107 LNNNNLTGRIPR---EVIQLIINGSL 129 (132)
Q Consensus 107 l~~n~~~~~~p~---~~~~l~~~~~L 129 (132)
+++|++++..|. .+..++.++.|
T Consensus 540 L~~N~l~~~~~~~~~l~~~lp~L~~L 565 (567)
T 1dce_A 540 LQGNSLCQEEGIQERLAEMLPSVSSI 565 (567)
T ss_dssp CTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred ecCCcCCCCccHHHHHHHHCcccCcc
Confidence 888888854331 22234455544
No 70
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.36 E-value=2.1e-12 Score=91.39 Aligned_cols=101 Identities=22% Similarity=0.159 Sum_probs=55.1
Q ss_pred CeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcc-cCCCCCCCEEEc
Q 045673 29 SVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPAS-IGNLRSLKFMRL 107 (132)
Q Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~-l~~l~~L~~l~l 107 (132)
+++.|++++|.+.+..+..|..++.|+.|++++|.+.+..+..+..+++|+.+++++|.+. .+|.. +..+++|+.|++
T Consensus 70 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L 148 (390)
T 3o6n_A 70 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSM 148 (390)
T ss_dssp CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred cCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEEC
Confidence 3455555555555444445555566666666666655444445555566666666666655 33433 355566666666
Q ss_pred cCccccccCchHHHHhccCCcee
Q 045673 108 NNNNLTGRIPREVIQLIINGSLR 130 (132)
Q Consensus 108 ~~n~~~~~~p~~~~~l~~~~~L~ 130 (132)
++|.+++..|..+..+..++.|.
T Consensus 149 ~~n~l~~~~~~~~~~l~~L~~L~ 171 (390)
T 3o6n_A 149 SNNNLERIEDDTFQATTSLQNLQ 171 (390)
T ss_dssp CSSCCCBCCTTTTSSCTTCCEEE
T ss_pred CCCccCccChhhccCCCCCCEEE
Confidence 66666544444455555555443
No 71
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.35 E-value=6.8e-13 Score=100.91 Aligned_cols=99 Identities=27% Similarity=0.342 Sum_probs=61.6
Q ss_pred CCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEEc
Q 045673 28 NSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRL 107 (132)
Q Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~l 107 (132)
..++.|++++|.+. .+|..+..+..|+.|++++|.++ .+|..+..+++|+.|++++|.++ .+|..++.+++|++|+|
T Consensus 224 ~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L 300 (727)
T 4b8c_D 224 QLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYF 300 (727)
T ss_dssp CCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEEC
T ss_pred CCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEEC
Confidence 45666666666665 34444556666666666666666 55555666666666666666666 55666666666666666
Q ss_pred cCccccccCchHHHHhccCCcee
Q 045673 108 NNNNLTGRIPREVIQLIINGSLR 130 (132)
Q Consensus 108 ~~n~~~~~~p~~~~~l~~~~~L~ 130 (132)
++|.++ .+|..++.+..++.|.
T Consensus 301 ~~N~l~-~lp~~~~~l~~L~~L~ 322 (727)
T 4b8c_D 301 FDNMVT-TLPWEFGNLCNLQFLG 322 (727)
T ss_dssp CSSCCC-CCCSSTTSCTTCCCEE
T ss_pred CCCCCC-ccChhhhcCCCccEEe
Confidence 666665 5665566655555554
No 72
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.35 E-value=3.6e-12 Score=82.51 Aligned_cols=89 Identities=22% Similarity=0.244 Sum_probs=79.5
Q ss_pred CCCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEE
Q 045673 27 ENSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMR 106 (132)
Q Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~ 106 (132)
..+++.|++++|.+++..+..|..++.|+.|++++|.+....+..+..+++|+.+++++|.+....+..+..+++|+.++
T Consensus 53 l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 132 (193)
T 2wfh_A 53 YKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLA 132 (193)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred ccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEE
Confidence 36899999999999988788899999999999999999978788899999999999999999944444688999999999
Q ss_pred ccCcccccc
Q 045673 107 LNNNNLTGR 115 (132)
Q Consensus 107 l~~n~~~~~ 115 (132)
+++|.+...
T Consensus 133 L~~N~~~C~ 141 (193)
T 2wfh_A 133 IGANPLYCD 141 (193)
T ss_dssp CCSSCEECS
T ss_pred eCCCCeecC
Confidence 999999743
No 73
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.35 E-value=2.1e-12 Score=88.60 Aligned_cols=101 Identities=21% Similarity=0.223 Sum_probs=45.2
Q ss_pred CeEEEEcCCCCccccCccccccCCCCcEEEeeeCccee-cCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEEc
Q 045673 29 SVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISG-SIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRL 107 (132)
Q Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~-~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~l 107 (132)
+++.|++++|.+.+..+..+..++.|+.|++++|.+.+ ..+..+..+++|+.+++++|.+.+..|..+..+++|+.|++
T Consensus 127 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 206 (306)
T 2z66_A 127 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 206 (306)
T ss_dssp TCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEEC
Confidence 34444444444443333344444444444444444432 23344444445555555555544333444444555555555
Q ss_pred cCccccccCchHHHHhccCCce
Q 045673 108 NNNNLTGRIPREVIQLIINGSL 129 (132)
Q Consensus 108 ~~n~~~~~~p~~~~~l~~~~~L 129 (132)
++|.+++..+..+..+..++.|
T Consensus 207 ~~N~l~~~~~~~~~~l~~L~~L 228 (306)
T 2z66_A 207 SHNNFFSLDTFPYKCLNSLQVL 228 (306)
T ss_dssp TTSCCSBCCSGGGTTCTTCCEE
T ss_pred CCCccCccChhhccCcccCCEe
Confidence 5555553333334444444443
No 74
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.35 E-value=3.7e-12 Score=82.46 Aligned_cols=99 Identities=18% Similarity=0.246 Sum_probs=62.1
Q ss_pred CCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEEc
Q 045673 28 NSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRL 107 (132)
Q Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~l 107 (132)
.+++.|++++|.+.. ++.+..++.|+.|++++|.+.+..+..+..+++|+.+++++|.+.+..|..+..+++|+.|++
T Consensus 66 ~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L 143 (197)
T 4ezg_A 66 HNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDL 143 (197)
T ss_dssp TTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEEC
T ss_pred CCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEc
Confidence 456666666665542 235566677777777777766555666666677777777777766545566666777777777
Q ss_pred cCcc-ccccCchHHHHhccCCcee
Q 045673 108 NNNN-LTGRIPREVIQLIINGSLR 130 (132)
Q Consensus 108 ~~n~-~~~~~p~~~~~l~~~~~L~ 130 (132)
++|. +. .+| .+..++.++.|.
T Consensus 144 ~~n~~i~-~~~-~l~~l~~L~~L~ 165 (197)
T 4ezg_A 144 SYNGAIT-DIM-PLKTLPELKSLN 165 (197)
T ss_dssp CSCTBCC-CCG-GGGGCSSCCEEE
T ss_pred cCCCCcc-ccH-hhcCCCCCCEEE
Confidence 7776 44 454 455555555554
No 75
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.35 E-value=3.5e-12 Score=93.83 Aligned_cols=103 Identities=19% Similarity=0.201 Sum_probs=60.5
Q ss_pred CCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEEc
Q 045673 28 NSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRL 107 (132)
Q Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~l 107 (132)
.+++.|++++|.+.+..+..|..+++|+.|++++|.+....+..+..+++|+.+++++|.+....+..++.+++|++|++
T Consensus 52 ~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 131 (570)
T 2z63_A 52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 131 (570)
T ss_dssp SSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEEC
T ss_pred CCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEec
Confidence 45566666666665544455556666666666666665444555555666666666666655222224666666677777
Q ss_pred cCccccc-cCchHHHHhccCCcee
Q 045673 108 NNNNLTG-RIPREVIQLIINGSLR 130 (132)
Q Consensus 108 ~~n~~~~-~~p~~~~~l~~~~~L~ 130 (132)
++|.+++ .+|..+.++..++.|.
T Consensus 132 ~~n~l~~~~lp~~~~~l~~L~~L~ 155 (570)
T 2z63_A 132 AHNLIQSFKLPEYFSNLTNLEHLD 155 (570)
T ss_dssp CSSCCCCCCCCGGGGGCTTCCEEE
T ss_pred CCCccceecChhhhcccCCCCEEe
Confidence 6666664 3566666666666554
No 76
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.33 E-value=1.9e-12 Score=96.38 Aligned_cols=103 Identities=17% Similarity=0.144 Sum_probs=88.7
Q ss_pred CCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEEc
Q 045673 28 NSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRL 107 (132)
Q Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~l 107 (132)
.+++.+++.++.+....+..+..++.|+.|++++|.+.+..+..+..+++|+.+++++|.+.+..|..++.+++|++|++
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence 35788999999998766666788999999999999999888889999999999999999999766667899999999999
Q ss_pred cCccccccCchH-HHHhccCCceee
Q 045673 108 NNNNLTGRIPRE-VIQLIINGSLRI 131 (132)
Q Consensus 108 ~~n~~~~~~p~~-~~~l~~~~~L~~ 131 (132)
++|.++ .+|.. +..+..++.|.+
T Consensus 131 ~~n~l~-~l~~~~~~~l~~L~~L~L 154 (597)
T 3oja_B 131 ERNDLS-SLPRGIFHNTPKLTTLSM 154 (597)
T ss_dssp CSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred eCCCCC-CCCHHHhccCCCCCEEEe
Confidence 999999 55544 577878877764
No 77
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.33 E-value=4.4e-12 Score=80.73 Aligned_cols=91 Identities=21% Similarity=0.216 Sum_probs=78.3
Q ss_pred CCCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEE
Q 045673 27 ENSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMR 106 (132)
Q Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~ 106 (132)
..+++.|++++|.+.+..+..+..++.|+.|++++|.+++..+..+..+++|+.+++++|.++...+..+..+++|+.++
T Consensus 51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 130 (177)
T 2o6r_A 51 LTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIW 130 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred cccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEE
Confidence 36899999999999977667788999999999999999966666678899999999999999844334568899999999
Q ss_pred ccCccccccCc
Q 045673 107 LNNNNLTGRIP 117 (132)
Q Consensus 107 l~~n~~~~~~p 117 (132)
+++|.+.+..|
T Consensus 131 l~~N~~~~~~~ 141 (177)
T 2o6r_A 131 LHTNPWDCSCP 141 (177)
T ss_dssp CCSSCBCCCHH
T ss_pred ecCCCeeccCc
Confidence 99999996554
No 78
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.32 E-value=1.2e-11 Score=87.52 Aligned_cols=101 Identities=19% Similarity=0.180 Sum_probs=84.1
Q ss_pred CCCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEE
Q 045673 27 ENSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMR 106 (132)
Q Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~ 106 (132)
..+++.|++++|.+.+. +.+..++.|+.|++++|.+.+..+..+..+++|+.+++++|.+. .+|..+..+++|+.|+
T Consensus 225 ~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~ 301 (390)
T 3o6n_A 225 NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLD 301 (390)
T ss_dssp CSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC-EEECSSSCCTTCCEEE
T ss_pred cccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCc-ccCcccCCCCCCCEEE
Confidence 35788888888888753 56778899999999999998777888888999999999999988 4566677889999999
Q ss_pred ccCccccccCchHHHHhccCCceee
Q 045673 107 LNNNNLTGRIPREVIQLIINGSLRI 131 (132)
Q Consensus 107 l~~n~~~~~~p~~~~~l~~~~~L~~ 131 (132)
+++|+++ .+|..+..+..++.|.+
T Consensus 302 L~~n~l~-~~~~~~~~l~~L~~L~L 325 (390)
T 3o6n_A 302 LSHNHLL-HVERNQPQFDRLENLYL 325 (390)
T ss_dssp CCSSCCC-CCGGGHHHHTTCSEEEC
T ss_pred CCCCcce-ecCccccccCcCCEEEC
Confidence 9999998 77888888888877764
No 79
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.32 E-value=3.3e-12 Score=93.92 Aligned_cols=103 Identities=19% Similarity=0.237 Sum_probs=56.3
Q ss_pred CCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcce-ecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEE
Q 045673 28 NSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNIS-GSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMR 106 (132)
Q Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~-~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~ 106 (132)
.+++.|++++|.+.+..+..+..++.|+.|++++|.+. +..|..+..+++|+.+++++|.+.+..|..+..+++|+.|+
T Consensus 421 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 500 (570)
T 2z63_A 421 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 500 (570)
T ss_dssp TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEe
Confidence 34555555555555444555555555555555555554 23455555555666666666665544455555566666666
Q ss_pred ccCccccccCchHHHHhccCCcee
Q 045673 107 LNNNNLTGRIPREVIQLIINGSLR 130 (132)
Q Consensus 107 l~~n~~~~~~p~~~~~l~~~~~L~ 130 (132)
+++|++++..|..+..++.++.|.
T Consensus 501 l~~n~l~~~~~~~~~~l~~L~~L~ 524 (570)
T 2z63_A 501 MASNQLKSVPDGIFDRLTSLQKIW 524 (570)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred CCCCcCCCCCHHHhhcccCCcEEE
Confidence 666666644444455555554443
No 80
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.32 E-value=8.7e-13 Score=98.92 Aligned_cols=114 Identities=18% Similarity=0.244 Sum_probs=94.7
Q ss_pred CCceeeeeC--CCCCeEEEEcCCCCcccc-----------------Cccccc--cCCCCcEEEeeeCcceecCCccccCC
Q 045673 17 CTWFHVTCN--SENSVIRVDLGNAGLSGP-----------------LVPQLG--LLTNLQYLSVYKNNISGSIPSEIGNL 75 (132)
Q Consensus 17 c~~~~~~~~--~~~~l~~L~l~~n~l~~~-----------------~~~~~~--~l~~L~~l~l~~~~~~~~~~~~~~~l 75 (132)
+...++.-. ...+++.|++++|.+.+. +|..+. .+++|+.|++++|.+.+..|..+..+
T Consensus 193 n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 272 (636)
T 4eco_A 193 NNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKAL 272 (636)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTC
T ss_pred CCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcC
Confidence 345554431 346899999999999985 888888 99999999999999988999999999
Q ss_pred cCCcEEEccccc-ccc-cCCcccCCC------CCCCEEEccCccccccCch--HHHHhccCCceee
Q 045673 76 KKLISLGLFNNQ-LSG-AIPASIGNL------RSLKFMRLNNNNLTGRIPR--EVIQLIINGSLRI 131 (132)
Q Consensus 76 ~~L~~l~ls~n~-~~~-~~p~~l~~l------~~L~~l~l~~n~~~~~~p~--~~~~l~~~~~L~~ 131 (132)
++|+.+++++|. +++ .+|..++.+ ++|+.|++++|+++ .+|. .+..+..++.|.+
T Consensus 273 ~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L 337 (636)
T 4eco_A 273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLEC 337 (636)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeC
Confidence 999999999998 887 678777665 88899999999888 7887 8888887777754
No 81
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.31 E-value=6.9e-12 Score=79.81 Aligned_cols=99 Identities=21% Similarity=0.165 Sum_probs=81.5
Q ss_pred CCCeEEEEcCCCCccccCccccccCC-CCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcc-cCCCCCCCE
Q 045673 27 ENSVIRVDLGNAGLSGPLVPQLGLLT-NLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPAS-IGNLRSLKF 104 (132)
Q Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~-~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~-l~~l~~L~~ 104 (132)
..+++.|++++|.+... +. +..+. .|+.|++++|.+.+. ..+..+++|+.+++++|.+.. +|.. +..+++|+.
T Consensus 18 ~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICR-IGEGLDQALPDLTE 92 (176)
T ss_dssp TTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCE-ECSCHHHHCTTCCE
T ss_pred cCCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccc-cCcchhhcCCCCCE
Confidence 45799999999999853 43 55555 999999999999865 678899999999999999994 4544 488999999
Q ss_pred EEccCccccccCch--HHHHhccCCceee
Q 045673 105 MRLNNNNLTGRIPR--EVIQLIINGSLRI 131 (132)
Q Consensus 105 l~l~~n~~~~~~p~--~~~~l~~~~~L~~ 131 (132)
|++++|.+. .+|. .+..++.++.|.+
T Consensus 93 L~L~~N~i~-~~~~~~~l~~l~~L~~L~l 120 (176)
T 1a9n_A 93 LILTNNSLV-ELGDLDPLASLKSLTYLCI 120 (176)
T ss_dssp EECCSCCCC-CGGGGGGGGGCTTCCEEEC
T ss_pred EECCCCcCC-cchhhHhhhcCCCCCEEEe
Confidence 999999997 6776 7777777777654
No 82
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.30 E-value=3.3e-12 Score=95.95 Aligned_cols=100 Identities=18% Similarity=0.145 Sum_probs=47.0
Q ss_pred CeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEEcc
Q 045673 29 SVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRLN 108 (132)
Q Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~l~ 108 (132)
+++.|++++|.+.+..|..+..++.|+.|++++|.+....+..+..+++|+++++++|.+.+..|..++.+++|++|+++
T Consensus 50 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 129 (680)
T 1ziw_A 50 QLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLS 129 (680)
T ss_dssp TCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECC
T ss_pred cCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECC
Confidence 45555555555554444445555555555555555543322334445555555555555443222344444455555555
Q ss_pred CccccccCchHHHHhccCCc
Q 045673 109 NNNLTGRIPREVIQLIINGS 128 (132)
Q Consensus 109 ~n~~~~~~p~~~~~l~~~~~ 128 (132)
+|.+++..|..+..+..++.
T Consensus 130 ~n~l~~~~~~~~~~l~~L~~ 149 (680)
T 1ziw_A 130 HNGLSSTKLGTQVQLENLQE 149 (680)
T ss_dssp SSCCSCCCCCSSSCCTTCCE
T ss_pred CCcccccCchhhcccccCCE
Confidence 44444333333333333333
No 83
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.30 E-value=6.1e-12 Score=93.37 Aligned_cols=98 Identities=22% Similarity=0.261 Sum_probs=88.6
Q ss_pred CeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEEcc
Q 045673 29 SVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRLN 108 (132)
Q Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~l~ 108 (132)
.++.|++++|.+++ +|. +..++.|+.|++++|.+. .+|..+..+++|+.+++++|.+++ +| .++.+++|+.|+++
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence 58899999999996 555 899999999999999999 788899999999999999999994 67 79999999999999
Q ss_pred CccccccC-chHHHHhccCCceee
Q 045673 109 NNNLTGRI-PREVIQLIINGSLRI 131 (132)
Q Consensus 109 ~n~~~~~~-p~~~~~l~~~~~L~~ 131 (132)
+|++++.. |..+..+..++.|.+
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L 540 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNL 540 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEEC
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEe
Confidence 99999655 899999998888765
No 84
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.30 E-value=1.1e-12 Score=90.46 Aligned_cols=84 Identities=18% Similarity=0.211 Sum_probs=40.3
Q ss_pred CeEEEEcCCCCccccCccccccC-----CCCcEEEeeeCcceecCCccccCCcCCcEEEccccccccc--CCccc--CCC
Q 045673 29 SVIRVDLGNAGLSGPLVPQLGLL-----TNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGA--IPASI--GNL 99 (132)
Q Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l-----~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~--~p~~l--~~l 99 (132)
+++.|++++|.+.+. |..+..+ +.|+.|++++|.+.+..+..+..+++|+.+++++|.+.+. .+..+ ..+
T Consensus 122 ~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l 200 (312)
T 1wwl_A 122 DLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKF 200 (312)
T ss_dssp CCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSC
T ss_pred CccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccC
Confidence 444555555555443 3333333 4555555555555444444455555555555555554322 12222 445
Q ss_pred CCCCEEEccCcccc
Q 045673 100 RSLKFMRLNNNNLT 113 (132)
Q Consensus 100 ~~L~~l~l~~n~~~ 113 (132)
++|+.|++++|.++
T Consensus 201 ~~L~~L~L~~N~l~ 214 (312)
T 1wwl_A 201 PTLQVLALRNAGME 214 (312)
T ss_dssp TTCCEEECTTSCCC
T ss_pred CCCCEEECCCCcCc
Confidence 55555555555555
No 85
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.30 E-value=7.2e-12 Score=87.36 Aligned_cols=96 Identities=18% Similarity=0.142 Sum_probs=80.7
Q ss_pred EEEcCCC-CccccCccccccCCCCcEEEeee-CcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEEccC
Q 045673 32 RVDLGNA-GLSGPLVPQLGLLTNLQYLSVYK-NNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRLNN 109 (132)
Q Consensus 32 ~L~l~~n-~l~~~~~~~~~~l~~L~~l~l~~-~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~l~~ 109 (132)
.++.+++ ++.. +|. +..+..|+.|++++ |.+.+..+..+..+++|+.|++++|.+.+..|..|..+++|+.|+|++
T Consensus 12 ~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4688888 8885 677 89999999999996 999978778899999999999999999977777899999999999999
Q ss_pred ccccccCchHHHHhccCCcee
Q 045673 110 NNLTGRIPREVIQLIINGSLR 130 (132)
Q Consensus 110 n~~~~~~p~~~~~l~~~~~L~ 130 (132)
|+++ .+|..++....++.|.
T Consensus 90 N~l~-~~~~~~~~~~~L~~l~ 109 (347)
T 2ifg_A 90 NALE-SLSWKTVQGLSLQELV 109 (347)
T ss_dssp SCCS-CCCSTTTCSCCCCEEE
T ss_pred Cccc-eeCHHHcccCCceEEE
Confidence 9999 5665554443455554
No 86
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.30 E-value=1.2e-11 Score=85.38 Aligned_cols=110 Identities=19% Similarity=0.138 Sum_probs=54.1
Q ss_pred CCceeeeeCCCCCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccc-cCCcCCcEEEcccccccccCCcc
Q 045673 17 CTWFHVTCNSENSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEI-GNLKKLISLGLFNNQLSGAIPAS 95 (132)
Q Consensus 17 c~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~-~~l~~L~~l~ls~n~~~~~~p~~ 95 (132)
|...++......+++.|++++|.+.+..+..+..++.|+.|++++|.+.+..+..+ ..+++|+.+++++|.++.. +.
T Consensus 109 n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~- 186 (317)
T 3o53_A 109 NNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG- 186 (317)
T ss_dssp SCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-
T ss_pred CccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-
Confidence 33444444444556666666666665444455556666666666666554444333 2345555555555555422 21
Q ss_pred cCCCCCCCEEEccCccccccCchHHHHhccCCce
Q 045673 96 IGNLRSLKFMRLNNNNLTGRIPREVIQLIINGSL 129 (132)
Q Consensus 96 l~~l~~L~~l~l~~n~~~~~~p~~~~~l~~~~~L 129 (132)
...+++|+.|++++|.++ .+|..+..+..++.|
T Consensus 187 ~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L 219 (317)
T 3o53_A 187 QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWI 219 (317)
T ss_dssp CCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEE
T ss_pred ccccccCCEEECCCCcCC-cchhhhcccCcccEE
Confidence 223445555555555554 233334444444443
No 87
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.29 E-value=2e-12 Score=98.38 Aligned_cols=94 Identities=26% Similarity=0.451 Sum_probs=86.0
Q ss_pred CCCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEE
Q 045673 27 ENSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMR 106 (132)
Q Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~ 106 (132)
..+|+.|+|++|.+. .+|..|..+..|+.|++++|.++ .+|..+..+++|+.|++++|.++ .+|..|+.+++|+.|+
T Consensus 246 l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~ 322 (727)
T 4b8c_D 246 YDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLG 322 (727)
T ss_dssp CCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEE
T ss_pred CCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEe
Confidence 367999999999999 77888999999999999999999 77999999999999999999998 7899999999999999
Q ss_pred ccCccccccCchHHHHh
Q 045673 107 LNNNNLTGRIPREVIQL 123 (132)
Q Consensus 107 l~~n~~~~~~p~~~~~l 123 (132)
|++|.+++.+|..+..+
T Consensus 323 L~~N~l~~~~p~~~~~~ 339 (727)
T 4b8c_D 323 VEGNPLEKQFLKILTEK 339 (727)
T ss_dssp CTTSCCCSHHHHHHHHH
T ss_pred CCCCccCCCChHHHhhc
Confidence 99999998888777553
No 88
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.28 E-value=1.7e-11 Score=90.95 Aligned_cols=103 Identities=16% Similarity=0.241 Sum_probs=61.5
Q ss_pred CCeEEEEcCCCCcccc---CccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCE
Q 045673 28 NSVIRVDLGNAGLSGP---LVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKF 104 (132)
Q Consensus 28 ~~l~~L~l~~n~l~~~---~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~ 104 (132)
++++.|++++|.+.+. .+..+..++.|+.|++++|.+.+..+..+..+++|+.+++++|.+.+..|..+..++.| .
T Consensus 449 ~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~ 527 (606)
T 3t6q_A 449 PALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-Y 527 (606)
T ss_dssp TTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-E
T ss_pred CCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-E
Confidence 3455555555555431 12335556666666666666665555666666666666666666665555666666666 6
Q ss_pred EEccCccccccCchHHHHhccCCceee
Q 045673 105 MRLNNNNLTGRIPREVIQLIINGSLRI 131 (132)
Q Consensus 105 l~l~~n~~~~~~p~~~~~l~~~~~L~~ 131 (132)
+++++|++++..|..+..+..++.|.+
T Consensus 528 L~L~~N~l~~~~~~~~~~l~~L~~L~l 554 (606)
T 3t6q_A 528 LNLASNHISIILPSLLPILSQQRTINL 554 (606)
T ss_dssp EECCSSCCCCCCGGGHHHHHTSSEEEC
T ss_pred EECcCCcccccCHhhcccCCCCCEEeC
Confidence 666666666555555666666665543
No 89
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.27 E-value=1.3e-11 Score=85.47 Aligned_cols=86 Identities=26% Similarity=0.336 Sum_probs=69.2
Q ss_pred CCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEEc
Q 045673 28 NSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRL 107 (132)
Q Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~l 107 (132)
.+++.|++++|.+.+..+..+..++.|+.|++++|.+.+..+..+..+++|+.+++++|.+. .+|..+..+++|+.+++
T Consensus 192 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l 270 (330)
T 1xku_A 192 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYL 270 (330)
T ss_dssp TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEEC
T ss_pred ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEEC
Confidence 56778888888887766777888888888888888887666667777888888888888887 67777888888888888
Q ss_pred cCccccc
Q 045673 108 NNNNLTG 114 (132)
Q Consensus 108 ~~n~~~~ 114 (132)
++|++++
T Consensus 271 ~~N~i~~ 277 (330)
T 1xku_A 271 HNNNISA 277 (330)
T ss_dssp CSSCCCC
T ss_pred CCCcCCc
Confidence 8888883
No 90
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.27 E-value=9.1e-12 Score=82.71 Aligned_cols=101 Identities=18% Similarity=0.233 Sum_probs=72.1
Q ss_pred CCeEEEEcCCCC-ccccCccccccCCCCcEEEeee-CcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCC--
Q 045673 28 NSVIRVDLGNAG-LSGPLVPQLGLLTNLQYLSVYK-NNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLK-- 103 (132)
Q Consensus 28 ~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~l~l~~-~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~-- 103 (132)
.+++.|++++|. +....+..|..++.|+.|++++ |.+....+..+..+++|+.+++++|.+. .+|. +..+++|+
T Consensus 55 ~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L 132 (239)
T 2xwt_C 55 PNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPD-LTKVYSTDIF 132 (239)
T ss_dssp TTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCC-SCCC-CTTCCBCCSE
T ss_pred CCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCc-cccc-cccccccccc
Confidence 578888888886 7766566777888888888887 8887666667777888888888888877 4565 66666666
Q ss_pred -EEEccCc-cccccCchHHHHhccCC-cee
Q 045673 104 -FMRLNNN-NLTGRIPREVIQLIING-SLR 130 (132)
Q Consensus 104 -~l~l~~n-~~~~~~p~~~~~l~~~~-~L~ 130 (132)
.+++++| .+++..+..+..+..++ .|.
T Consensus 133 ~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~ 162 (239)
T 2xwt_C 133 FILEITDNPYMTSIPVNAFQGLCNETLTLK 162 (239)
T ss_dssp EEEEEESCTTCCEECTTTTTTTBSSEEEEE
T ss_pred cEEECCCCcchhhcCcccccchhcceeEEE
Confidence 7777777 77643334455555555 443
No 91
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.26 E-value=1.2e-11 Score=89.11 Aligned_cols=102 Identities=24% Similarity=0.233 Sum_probs=74.2
Q ss_pred CCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEEc
Q 045673 28 NSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRL 107 (132)
Q Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~l 107 (132)
.+++.|++++|.+.+. +.+..+..|+.|++++|.+.+..+..+..+++|+.+++++|.+....+..+..+++|+.|++
T Consensus 196 ~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 273 (452)
T 3zyi_A 196 FNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNL 273 (452)
T ss_dssp TTCCEEECTTSCCSSC--CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCccccc--ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEEC
Confidence 4677777777777643 24667778888888888887777777778888888888888887666677778888888888
Q ss_pred cCccccccCchHHHHhccCCceee
Q 045673 108 NNNNLTGRIPREVIQLIINGSLRI 131 (132)
Q Consensus 108 ~~n~~~~~~p~~~~~l~~~~~L~~ 131 (132)
++|++++..+..+..+..++.|.+
T Consensus 274 ~~N~l~~~~~~~~~~l~~L~~L~L 297 (452)
T 3zyi_A 274 AHNNLSSLPHDLFTPLRYLVELHL 297 (452)
T ss_dssp CSSCCSCCCTTSSTTCTTCCEEEC
T ss_pred CCCcCCccChHHhccccCCCEEEc
Confidence 888888444445555666666543
No 92
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.26 E-value=5.7e-12 Score=88.13 Aligned_cols=102 Identities=20% Similarity=0.210 Sum_probs=66.0
Q ss_pred CCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCc--ccCCCCCCCEE
Q 045673 28 NSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPA--SIGNLRSLKFM 105 (132)
Q Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~--~l~~l~~L~~l 105 (132)
.+++.|++++|.+.+..+..|..+++|+.|++++|.+....+..+..+++|+++++++|.+. .+|. .+..+++|+.|
T Consensus 76 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L 154 (353)
T 2z80_A 76 VNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQIL 154 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEE
Confidence 56777777777777666666777777777777777777443344666777777777777776 4444 56667777777
Q ss_pred EccCc-cccccCchHHHHhccCCcee
Q 045673 106 RLNNN-NLTGRIPREVIQLIINGSLR 130 (132)
Q Consensus 106 ~l~~n-~~~~~~p~~~~~l~~~~~L~ 130 (132)
++++| .+....+..+..+..++.|.
T Consensus 155 ~l~~n~~~~~~~~~~~~~l~~L~~L~ 180 (353)
T 2z80_A 155 RVGNMDTFTKIQRKDFAGLTFLEELE 180 (353)
T ss_dssp EEEESSSCCEECTTTTTTCCEEEEEE
T ss_pred ECCCCccccccCHHHccCCCCCCEEE
Confidence 77766 34433344555555554443
No 93
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.23 E-value=6.8e-12 Score=92.02 Aligned_cols=103 Identities=20% Similarity=0.196 Sum_probs=71.8
Q ss_pred CCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccc-cCCcccCCCCCCCEEE
Q 045673 28 NSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSG-AIPASIGNLRSLKFMR 106 (132)
Q Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~-~~p~~l~~l~~L~~l~ 106 (132)
.+++.|++++|.+.+..+..|..+++|+.|++++|.+.+..+..+..+++|+++++++|.+.. ..|..++.+++|+.|+
T Consensus 50 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~ 129 (549)
T 2z81_A 50 ANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLR 129 (549)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEE
T ss_pred CcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEE
Confidence 577888888888877666777788888888888888775555557777888888888887764 2355677777777777
Q ss_pred ccCccccccCc-hHHHHhccCCcee
Q 045673 107 LNNNNLTGRIP-REVIQLIINGSLR 130 (132)
Q Consensus 107 l~~n~~~~~~p-~~~~~l~~~~~L~ 130 (132)
+++|.+.+.+| ..+..+..++.|.
T Consensus 130 L~~n~~~~~~~~~~~~~l~~L~~L~ 154 (549)
T 2z81_A 130 IGNVETFSEIRRIDFAGLTSLNELE 154 (549)
T ss_dssp EEESSSCCEECTTTTTTCCEEEEEE
T ss_pred CCCCccccccCHhhhhcccccCeee
Confidence 77776433444 4555555555443
No 94
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.23 E-value=2.8e-11 Score=86.98 Aligned_cols=102 Identities=19% Similarity=0.145 Sum_probs=67.6
Q ss_pred CCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEEc
Q 045673 28 NSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRL 107 (132)
Q Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~l 107 (132)
.+++.|++++|.+....+..|..+++|+.|++++|.+....+..+..+++|+.+++++|.+....+..+..+++|+.|++
T Consensus 88 ~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l 167 (440)
T 3zyj_A 88 RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDL 167 (440)
T ss_dssp SSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCC
Confidence 57888888888888766677888888888888888887555556777888888888888777443445556666666666
Q ss_pred cCccccccCc-hHHHHhccCCce
Q 045673 108 NNNNLTGRIP-REVIQLIINGSL 129 (132)
Q Consensus 108 ~~n~~~~~~p-~~~~~l~~~~~L 129 (132)
++|+..+.++ ..+..+..++.|
T Consensus 168 ~~~~~l~~i~~~~~~~l~~L~~L 190 (440)
T 3zyj_A 168 GELKRLSYISEGAFEGLSNLRYL 190 (440)
T ss_dssp CCCTTCCEECTTTTTTCSSCCEE
T ss_pred CCCCCcceeCcchhhcccccCee
Confidence 6533222333 234444444444
No 95
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.23 E-value=3.3e-12 Score=98.80 Aligned_cols=114 Identities=18% Similarity=0.222 Sum_probs=91.6
Q ss_pred CCceeeeeC--CCCCeEEEEcCCCCccc-----------------cCccccc--cCCCCcEEEeeeCcceecCCccccCC
Q 045673 17 CTWFHVTCN--SENSVIRVDLGNAGLSG-----------------PLVPQLG--LLTNLQYLSVYKNNISGSIPSEIGNL 75 (132)
Q Consensus 17 c~~~~~~~~--~~~~l~~L~l~~n~l~~-----------------~~~~~~~--~l~~L~~l~l~~~~~~~~~~~~~~~l 75 (132)
+...+++.. ...+++.|++++|.+.+ .+|..+. .++.|+.|++++|.+.+..|..+..+
T Consensus 435 N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L 514 (876)
T 4ecn_A 435 NRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL 514 (876)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGC
T ss_pred CcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCC
Confidence 344554431 34689999999999998 3788877 89999999999999888899999999
Q ss_pred cCCcEEEccccc-ccc-cCCcccCCC-------CCCCEEEccCccccccCch--HHHHhccCCceee
Q 045673 76 KKLISLGLFNNQ-LSG-AIPASIGNL-------RSLKFMRLNNNNLTGRIPR--EVIQLIINGSLRI 131 (132)
Q Consensus 76 ~~L~~l~ls~n~-~~~-~~p~~l~~l-------~~L~~l~l~~n~~~~~~p~--~~~~l~~~~~L~~ 131 (132)
++|+.+++++|. +++ .+|..++.+ ++|+.|++++|.++ .+|. .+..+..++.|.+
T Consensus 515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~L 580 (876)
T 4ecn_A 515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDC 580 (876)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEEC
Confidence 999999999998 876 677655444 48999999999998 7887 8888887777754
No 96
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.22 E-value=7.8e-12 Score=86.73 Aligned_cols=85 Identities=26% Similarity=0.311 Sum_probs=53.3
Q ss_pred CCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEEc
Q 045673 28 NSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRL 107 (132)
Q Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~l 107 (132)
.+++.|++++|.+.+..+..+..++.|+.|++++|.+.+..+..+..+++|+.+++++|.+. .+|..+..+++|+.+++
T Consensus 193 ~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l 271 (332)
T 2ft3_A 193 ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYL 271 (332)
T ss_dssp SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEEC
T ss_pred CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEEC
Confidence 35666666666666555555666666666666666666554455566666666666666666 55665666666666666
Q ss_pred cCcccc
Q 045673 108 NNNNLT 113 (132)
Q Consensus 108 ~~n~~~ 113 (132)
++|+++
T Consensus 272 ~~N~l~ 277 (332)
T 2ft3_A 272 HTNNIT 277 (332)
T ss_dssp CSSCCC
T ss_pred CCCCCC
Confidence 666666
No 97
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.21 E-value=1.6e-11 Score=84.79 Aligned_cols=99 Identities=19% Similarity=0.154 Sum_probs=62.1
Q ss_pred CCeEEEEcCCCCccccCccccc-cCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEE
Q 045673 28 NSVIRVDLGNAGLSGPLVPQLG-LLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMR 106 (132)
Q Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~-~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~ 106 (132)
.+++.|++++|.+.+..+..+. .++.|+.|++++|.+... + ....+++|+.+++++|.+. .+|..+..+++|+.|+
T Consensus 144 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~ 220 (317)
T 3o53_A 144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWIS 220 (317)
T ss_dssp SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEE
T ss_pred CCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCC-cchhhhcccCcccEEE
Confidence 5677777777777765555543 567777777777776633 2 2234666777777777766 3455566666677777
Q ss_pred ccCccccccCchHHHHhccCCcee
Q 045673 107 LNNNNLTGRIPREVIQLIINGSLR 130 (132)
Q Consensus 107 l~~n~~~~~~p~~~~~l~~~~~L~ 130 (132)
+++|.++ .+|..+..+..++.|.
T Consensus 221 L~~N~l~-~l~~~~~~l~~L~~L~ 243 (317)
T 3o53_A 221 LRNNKLV-LIEKALRFSQNLEHFD 243 (317)
T ss_dssp CTTSCCC-EECTTCCCCTTCCEEE
T ss_pred CcCCccc-chhhHhhcCCCCCEEE
Confidence 7777666 4565555555555544
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.21 E-value=2.7e-11 Score=84.79 Aligned_cols=102 Identities=18% Similarity=0.226 Sum_probs=82.6
Q ss_pred CCCCCceeeeeCCC----------CCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCC-ccccCCcCCcEE-
Q 045673 14 VNPCTWFHVTCNSE----------NSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIP-SEIGNLKKLISL- 81 (132)
Q Consensus 14 ~~~c~~~~~~~~~~----------~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~-~~~~~l~~L~~l- 81 (132)
.+.|.+..|.|..+ .+++.|++++|.|+...+..|..+++|+.|++++|.+....+ ..+..++++..+
T Consensus 6 ~C~C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l 85 (350)
T 4ay9_X 6 ICHCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR 85 (350)
T ss_dssp SSEEETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEE
T ss_pred ccEeeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhh
Confidence 46788888999532 368999999999997666789999999999999999854444 556788887764
Q ss_pred EcccccccccCCcccCCCCCCCEEEccCcccccc
Q 045673 82 GLFNNQLSGAIPASIGNLRSLKFMRLNNNNLTGR 115 (132)
Q Consensus 82 ~ls~n~~~~~~p~~l~~l~~L~~l~l~~n~~~~~ 115 (132)
.+..|.+....|..+..+++|+++++++|.+...
T Consensus 86 ~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~ 119 (350)
T 4ay9_X 86 IEKANNLLYINPEAFQNLPNLQYLLISNTGIKHL 119 (350)
T ss_dssp EEEETTCCEECTTSBCCCTTCCEEEEEEECCSSC
T ss_pred cccCCcccccCchhhhhccccccccccccccccC
Confidence 5567888866677899999999999999999843
No 99
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.20 E-value=3.6e-11 Score=92.67 Aligned_cols=104 Identities=19% Similarity=0.159 Sum_probs=79.3
Q ss_pred CCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEEc
Q 045673 28 NSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRL 107 (132)
Q Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~l 107 (132)
.+++.|++++|.+.+..+..+..++.|+.|++++|.+.+..+..+..+++|+.+++++|.+....|..+..+++|+.|++
T Consensus 266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 345 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDL 345 (844)
T ss_dssp SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEEC
T ss_pred CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEEC
Confidence 46788888888887777777778888888888888888777777778888888888888887566677888888888888
Q ss_pred cCccccccCchHHHHhccCCceee
Q 045673 108 NNNNLTGRIPREVIQLIINGSLRI 131 (132)
Q Consensus 108 ~~n~~~~~~p~~~~~l~~~~~L~~ 131 (132)
++|.+.+..+..+..+..++.|.+
T Consensus 346 ~~N~i~~~~~~~~~~l~~L~~L~L 369 (844)
T 3j0a_A 346 QKNHIAIIQDQTFKFLEKLQTLDL 369 (844)
T ss_dssp CSCCCCCCCSSCSCSCCCCCEEEE
T ss_pred CCCCCCccChhhhcCCCCCCEEEC
Confidence 888887544455666666666643
No 100
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.19 E-value=2.1e-11 Score=88.91 Aligned_cols=101 Identities=19% Similarity=0.152 Sum_probs=78.7
Q ss_pred CCCeEEEEcCCCCccccCccccc-cCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEE
Q 045673 27 ENSVIRVDLGNAGLSGPLVPQLG-LLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFM 105 (132)
Q Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~-~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l 105 (132)
..+++.|++++|.+.+..|..+. .++.|+.|++++|.+++. + ....+++|+.+++++|.+++ +|..+..+++|+.|
T Consensus 143 l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L 219 (487)
T 3oja_A 143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWI 219 (487)
T ss_dssp GSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEE
T ss_pred CCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-c-ccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEE
Confidence 36799999999999887777775 688999999999998855 2 23468889999999998884 56668888889999
Q ss_pred EccCccccccCchHHHHhccCCceee
Q 045673 106 RLNNNNLTGRIPREVIQLIINGSLRI 131 (132)
Q Consensus 106 ~l~~n~~~~~~p~~~~~l~~~~~L~~ 131 (132)
++++|.++ .+|..+..+..+..|.+
T Consensus 220 ~Ls~N~l~-~lp~~l~~l~~L~~L~l 244 (487)
T 3oja_A 220 SLRNNKLV-LIEKALRFSQNLEHFDL 244 (487)
T ss_dssp ECTTSCCC-EECTTCCCCTTCCEEEC
T ss_pred EecCCcCc-ccchhhccCCCCCEEEc
Confidence 99988888 46776666666666543
No 101
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.19 E-value=2.7e-11 Score=88.48 Aligned_cols=101 Identities=24% Similarity=0.384 Sum_probs=55.4
Q ss_pred CCeEEEEcCCCCccccCccccccCCCCcEEEeeeCccee--cCCccccCCcCCcEEEccccccc----------------
Q 045673 28 NSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISG--SIPSEIGNLKKLISLGLFNNQLS---------------- 89 (132)
Q Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~--~~~~~~~~l~~L~~l~ls~n~~~---------------- 89 (132)
.+++.|++++|.+.+..|..+..++.|+.|++++|.+.+ ..|..+..+++|+.+++++|.+.
T Consensus 324 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~ 403 (520)
T 2z7x_B 324 SPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLS 403 (520)
T ss_dssp CCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCE
T ss_pred CcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCE
Confidence 445555555555555445555555555555555555543 22233444444555555444444
Q ss_pred ---------ccCCcccCCCCCCCEEEccCccccccCchHHHHhccCCceee
Q 045673 90 ---------GAIPASIGNLRSLKFMRLNNNNLTGRIPREVIQLIINGSLRI 131 (132)
Q Consensus 90 ---------~~~p~~l~~l~~L~~l~l~~n~~~~~~p~~~~~l~~~~~L~~ 131 (132)
+..|..+. ++|+.|++++|+++ .+|..++.+..++.|.+
T Consensus 404 L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L 451 (520)
T 2z7x_B 404 LNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNV 451 (520)
T ss_dssp EECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEEC
T ss_pred EECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEEC
Confidence 33333322 56777777777777 67777777777776654
No 102
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.17 E-value=1.7e-11 Score=84.55 Aligned_cols=87 Identities=16% Similarity=0.177 Sum_probs=55.7
Q ss_pred CCCeEEEEcCCCCccccCcccc--ccCCCCcEEEeeeCcceecCCccccCC-----cCCcEEEcccccccccCCcccCCC
Q 045673 27 ENSVIRVDLGNAGLSGPLVPQL--GLLTNLQYLSVYKNNISGSIPSEIGNL-----KKLISLGLFNNQLSGAIPASIGNL 99 (132)
Q Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~--~~l~~L~~l~l~~~~~~~~~~~~~~~l-----~~L~~l~ls~n~~~~~~p~~l~~l 99 (132)
..+++.|++++|.+.+..|..+ ..++.|+.|++++|.+.+. |..+..+ ++|+++++++|.+.+..|..++.+
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 3466677777777766566554 5667777777777776644 5444444 667777777777664444566667
Q ss_pred CCCCEEEccCccccc
Q 045673 100 RSLKFMRLNNNNLTG 114 (132)
Q Consensus 100 ~~L~~l~l~~n~~~~ 114 (132)
++|+.|++++|++.+
T Consensus 173 ~~L~~L~Ls~N~l~~ 187 (312)
T 1wwl_A 173 PALSTLDLSDNPELG 187 (312)
T ss_dssp SSCCEEECCSCTTCH
T ss_pred CCCCEEECCCCCcCc
Confidence 777777777776654
No 103
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.16 E-value=1e-10 Score=86.34 Aligned_cols=98 Identities=20% Similarity=0.291 Sum_probs=53.4
Q ss_pred CeEEEEcCCCCccccCc-cccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEEc
Q 045673 29 SVIRVDLGNAGLSGPLV-PQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRL 107 (132)
Q Consensus 29 ~l~~L~l~~n~l~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~l 107 (132)
+++.|++++|.+.+.+| ..+..++.|+.+++++|.+++..+..+. ++|+.+++++|.++ .+|..+..+++|+.|++
T Consensus 404 ~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L 480 (562)
T 3a79_B 404 SLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNV 480 (562)
T ss_dssp TCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEEC
T ss_pred CCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEEC
Confidence 34444444444443222 2233444444444444444333332222 46666677766666 56666667777777777
Q ss_pred cCccccccCchH-HHHhccCCcee
Q 045673 108 NNNNLTGRIPRE-VIQLIINGSLR 130 (132)
Q Consensus 108 ~~n~~~~~~p~~-~~~l~~~~~L~ 130 (132)
++|+++ .+|.. +..+..++.|.
T Consensus 481 ~~N~l~-~l~~~~~~~l~~L~~L~ 503 (562)
T 3a79_B 481 ASNQLK-SVPDGVFDRLTSLQYIW 503 (562)
T ss_dssp CSSCCC-CCCTTSTTTCTTCCCEE
T ss_pred CCCCCC-CCCHHHHhcCCCCCEEE
Confidence 777777 56655 56666666554
No 104
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.13 E-value=4.2e-11 Score=82.45 Aligned_cols=85 Identities=12% Similarity=0.058 Sum_probs=51.8
Q ss_pred CeEEEEcCCCCccccCcccc--ccCCCCcEEEeeeCcceecCC----ccccCCcCCcEEEcccccccccCCcccCCCCCC
Q 045673 29 SVIRVDLGNAGLSGPLVPQL--GLLTNLQYLSVYKNNISGSIP----SEIGNLKKLISLGLFNNQLSGAIPASIGNLRSL 102 (132)
Q Consensus 29 ~l~~L~l~~n~l~~~~~~~~--~~l~~L~~l~l~~~~~~~~~~----~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L 102 (132)
+++.|++++|.+.+..|..+ ..+..|+.|++++|.+.+..+ ..+..+++|+.+++++|.+....+..++.+++|
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 171 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL 171 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence 47778888888777666665 566666666666666654322 122345566666666666654444455566666
Q ss_pred CEEEccCcccc
Q 045673 103 KFMRLNNNNLT 113 (132)
Q Consensus 103 ~~l~l~~n~~~ 113 (132)
++|++++|++.
T Consensus 172 ~~L~Ls~N~l~ 182 (310)
T 4glp_A 172 TSLDLSDNPGL 182 (310)
T ss_dssp CEEECCSCTTC
T ss_pred CEEECCCCCCc
Confidence 66666666554
No 105
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.12 E-value=1.9e-10 Score=78.66 Aligned_cols=94 Identities=26% Similarity=0.318 Sum_probs=47.9
Q ss_pred CeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEEcc
Q 045673 29 SVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRLN 108 (132)
Q Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~l~ 108 (132)
+++.|++++|.+.+. +.+..++.|+.|++++|.+.+. ..+..+++|+.+++++|.+.+ .+. +..+++|+.|+++
T Consensus 113 ~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~-~~~-l~~l~~L~~L~L~ 186 (291)
T 1h6t_A 113 KLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD-IVP-LAGLTKLQNLYLS 186 (291)
T ss_dssp TCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC-CGG-GTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCcccc-chh-hcCCCccCEEECC
Confidence 444555555554432 2344555555555555555532 344555556666666665552 222 5556666666666
Q ss_pred CccccccCchHHHHhccCCcee
Q 045673 109 NNNLTGRIPREVIQLIINGSLR 130 (132)
Q Consensus 109 ~n~~~~~~p~~~~~l~~~~~L~ 130 (132)
+|.++ .++. +..+..++.|.
T Consensus 187 ~N~i~-~l~~-l~~l~~L~~L~ 206 (291)
T 1h6t_A 187 KNHIS-DLRA-LAGLKNLDVLE 206 (291)
T ss_dssp SSCCC-BCGG-GTTCTTCSEEE
T ss_pred CCcCC-CChh-hccCCCCCEEE
Confidence 66665 3432 44444444443
No 106
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.12 E-value=3.1e-10 Score=76.65 Aligned_cols=94 Identities=28% Similarity=0.273 Sum_probs=58.0
Q ss_pred CCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEEc
Q 045673 28 NSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRL 107 (132)
Q Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~l 107 (132)
.+++.|++++|.+.+..+ +..++.|+.|++++|.+.+ .+. +.. ++|+.+++++|.+++ .+ .+..+++|+.|++
T Consensus 63 ~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~L 135 (263)
T 1xeu_A 63 TNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKN-LNG-IPS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSI 135 (263)
T ss_dssp TTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSC-CTT-CCC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEEC
T ss_pred CCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCC-cCc-ccc-CcccEEEccCCccCC-Ch-hhcCcccccEEEC
Confidence 567777777777775433 6677777777777777763 222 222 666666666666652 22 4666677777777
Q ss_pred cCccccccCchHHHHhccCCcee
Q 045673 108 NNNNLTGRIPREVIQLIINGSLR 130 (132)
Q Consensus 108 ~~n~~~~~~p~~~~~l~~~~~L~ 130 (132)
++|+++ .++ .+..+..++.|.
T Consensus 136 s~N~i~-~~~-~l~~l~~L~~L~ 156 (263)
T 1xeu_A 136 RNNKLK-SIV-MLGFLSKLEVLD 156 (263)
T ss_dssp TTSCCC-BCG-GGGGCTTCCEEE
T ss_pred CCCcCC-CCh-HHccCCCCCEEE
Confidence 777766 343 455555555544
No 107
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.10 E-value=3.4e-10 Score=77.98 Aligned_cols=80 Identities=24% Similarity=0.390 Sum_probs=40.6
Q ss_pred CCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEEc
Q 045673 28 NSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRL 107 (132)
Q Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~l 107 (132)
.+++.|++++|.+.+..+ +..+++|+.|++++|.+.+. +.+..+++|+.+++++|.+.. .+. +..+++|+.|++
T Consensus 63 ~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l 136 (308)
T 1h6u_A 63 NNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYL 136 (308)
T ss_dssp TTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEEC
T ss_pred CCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEEC
Confidence 455566666665553322 55555555555555555522 234455555555555555542 222 445555555555
Q ss_pred cCcccc
Q 045673 108 NNNNLT 113 (132)
Q Consensus 108 ~~n~~~ 113 (132)
++|.++
T Consensus 137 ~~n~l~ 142 (308)
T 1h6u_A 137 DLNQIT 142 (308)
T ss_dssp CSSCCC
T ss_pred CCCccC
Confidence 555554
No 108
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.09 E-value=1.4e-10 Score=80.57 Aligned_cols=96 Identities=28% Similarity=0.329 Sum_probs=48.0
Q ss_pred CCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEEc
Q 045673 28 NSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRL 107 (132)
Q Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~l 107 (132)
.+++.|++++|.+.+..+ +..++.|+.+++++|.+... +.+..+++|+.+++++|.+.. . ..+..+++|+.|++
T Consensus 221 ~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L 294 (347)
T 4fmz_A 221 TRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFL 294 (347)
T ss_dssp TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEEC
T ss_pred CcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEEC
Confidence 455666666666553322 45555555555555555522 234455555555555555542 2 23444555555555
Q ss_pred cCccccccCchHHHHhccCCce
Q 045673 108 NNNNLTGRIPREVIQLIINGSL 129 (132)
Q Consensus 108 ~~n~~~~~~p~~~~~l~~~~~L 129 (132)
++|.+.+..|..+..++.++.|
T Consensus 295 ~~n~l~~~~~~~l~~l~~L~~L 316 (347)
T 4fmz_A 295 NNNQLGNEDMEVIGGLTNLTTL 316 (347)
T ss_dssp CSSCCCGGGHHHHHTCTTCSEE
T ss_pred cCCcCCCcChhHhhccccCCEE
Confidence 5555554444444444444444
No 109
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.08 E-value=3.9e-10 Score=77.67 Aligned_cols=18 Identities=22% Similarity=0.565 Sum_probs=7.3
Q ss_pred cCCCCCCCEEEccCcccc
Q 045673 96 IGNLRSLKFMRLNNNNLT 113 (132)
Q Consensus 96 l~~l~~L~~l~l~~n~~~ 113 (132)
+..+++|+.|++++|.++
T Consensus 169 l~~l~~L~~L~l~~n~l~ 186 (308)
T 1h6u_A 169 LANLSKLTTLKADDNKIS 186 (308)
T ss_dssp GTTCTTCCEEECCSSCCC
T ss_pred hcCCCCCCEEECCCCccC
Confidence 333344444444444443
No 110
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.08 E-value=4e-10 Score=78.31 Aligned_cols=99 Identities=31% Similarity=0.324 Sum_probs=75.7
Q ss_pred CCCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEE
Q 045673 27 ENSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMR 106 (132)
Q Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~ 106 (132)
..+++.|++++|.+.+. +.+..++.|+.+++++|.+... +.+..+++|+.+++++|.+....+..+..+++|+.++
T Consensus 242 l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 317 (347)
T 4fmz_A 242 LSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLF 317 (347)
T ss_dssp CTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEE
T ss_pred CCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEE
Confidence 46788888888888753 4577888888888888888743 4567788888888888888766667788888888888
Q ss_pred ccCccccccCchHHHHhccCCceee
Q 045673 107 LNNNNLTGRIPREVIQLIINGSLRI 131 (132)
Q Consensus 107 l~~n~~~~~~p~~~~~l~~~~~L~~ 131 (132)
+++|++++..| +..+..++.|.+
T Consensus 318 L~~n~l~~~~~--~~~l~~L~~L~l 340 (347)
T 4fmz_A 318 LSQNHITDIRP--LASLSKMDSADF 340 (347)
T ss_dssp CCSSSCCCCGG--GGGCTTCSEESS
T ss_pred ccCCccccccC--hhhhhccceeeh
Confidence 88888884433 666666666653
No 111
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.07 E-value=4.8e-10 Score=76.67 Aligned_cols=80 Identities=33% Similarity=0.409 Sum_probs=36.3
Q ss_pred CCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEEc
Q 045673 28 NSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRL 107 (132)
Q Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~l 107 (132)
.+++.|++++|.+.+..+ +..+++|+.|++++|.+.. . +.+..+++|+.+++++|.+.. + ..+..+++|+.|++
T Consensus 68 ~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l 141 (291)
T 1h6t_A 68 PNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-L-SSLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYL 141 (291)
T ss_dssp TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEEC
T ss_pred CCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-C-hhhccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEc
Confidence 345555555555553322 4455555555555555442 1 124444445555554444442 1 22334444444444
Q ss_pred cCcccc
Q 045673 108 NNNNLT 113 (132)
Q Consensus 108 ~~n~~~ 113 (132)
++|.++
T Consensus 142 ~~n~l~ 147 (291)
T 1h6t_A 142 GNNKIT 147 (291)
T ss_dssp CSSCCC
T ss_pred cCCcCC
Confidence 444444
No 112
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.06 E-value=4e-11 Score=82.54 Aligned_cols=36 Identities=14% Similarity=0.070 Sum_probs=19.0
Q ss_pred CeEEEEcCCCCccccCccccccCCCCcEEEeeeCcc
Q 045673 29 SVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNI 64 (132)
Q Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~ 64 (132)
+++.|++++|.+.+..+..+..++.|+.|++++|.+
T Consensus 146 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 181 (310)
T 4glp_A 146 GLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPG 181 (310)
T ss_dssp CCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTT
T ss_pred CCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCC
Confidence 455555555555544444555555555555555543
No 113
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.04 E-value=7.7e-10 Score=82.73 Aligned_cols=95 Identities=25% Similarity=0.347 Sum_probs=57.2
Q ss_pred CCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEEc
Q 045673 28 NSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRL 107 (132)
Q Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~l 107 (132)
.+|+.|++++|.+.+. +.+..++.|+.|++++|.+.+. ..+..+++|+.|++++|.+.+..| +..+++|+.|+|
T Consensus 109 ~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~L 182 (605)
T 1m9s_A 109 KKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYL 182 (605)
T ss_dssp TTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred CCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEEC
Confidence 4566666666666542 3455666666666666666633 455666667777777776663322 666677777777
Q ss_pred cCccccccCchHHHHhccCCcee
Q 045673 108 NNNNLTGRIPREVIQLIINGSLR 130 (132)
Q Consensus 108 ~~n~~~~~~p~~~~~l~~~~~L~ 130 (132)
++|.+++ +| .+..+..++.|.
T Consensus 183 s~N~i~~-l~-~l~~l~~L~~L~ 203 (605)
T 1m9s_A 183 SKNHISD-LR-ALAGLKNLDVLE 203 (605)
T ss_dssp CSSCCCB-CG-GGTTCTTCSEEE
T ss_pred cCCCCCC-Ch-HHccCCCCCEEE
Confidence 7777763 33 355555555554
No 114
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.01 E-value=1.2e-09 Score=73.76 Aligned_cols=96 Identities=26% Similarity=0.312 Sum_probs=78.5
Q ss_pred CCCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEE
Q 045673 27 ENSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMR 106 (132)
Q Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~ 106 (132)
..+++.|++++|.+.. ++ .+..++.|+.|++++|.+.+. +. +..+++|+.+++++|.+. .+|.. .. ++|+.|+
T Consensus 40 l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L~~N~l~-~l~~~-~~-~~L~~L~ 112 (263)
T 1xeu_A 40 LSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDL-SP-LKDLTKLEELSVNRNRLK-NLNGI-PS-ACLSRLF 112 (263)
T ss_dssp HTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEECCSSCCS-CCTTC-CC-SSCCEEE
T ss_pred cCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCC-hh-hccCCCCCEEECCCCccC-CcCcc-cc-CcccEEE
Confidence 3679999999999985 34 688899999999999999854 44 889999999999999998 45543 33 8999999
Q ss_pred ccCccccccCchHHHHhccCCceee
Q 045673 107 LNNNNLTGRIPREVIQLIINGSLRI 131 (132)
Q Consensus 107 l~~n~~~~~~p~~~~~l~~~~~L~~ 131 (132)
+++|.++ .++ .+..+..++.|.+
T Consensus 113 L~~N~l~-~~~-~l~~l~~L~~L~L 135 (263)
T 1xeu_A 113 LDNNELR-DTD-SLIHLKNLEILSI 135 (263)
T ss_dssp CCSSCCS-BSG-GGTTCTTCCEEEC
T ss_pred ccCCccC-CCh-hhcCcccccEEEC
Confidence 9999999 454 4777777777654
No 115
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.01 E-value=5e-12 Score=81.91 Aligned_cols=81 Identities=23% Similarity=0.314 Sum_probs=50.6
Q ss_pred CCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEEc
Q 045673 28 NSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRL 107 (132)
Q Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~l 107 (132)
.+++.|++++|.+.+ +| .+..++.|+.|++++|.+. .+|..+..+++|+.+++++|.+.+ +| .+..+++|+.|++
T Consensus 48 ~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l 122 (198)
T 1ds9_A 48 KACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYM 122 (198)
T ss_dssp TTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEE
T ss_pred CCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEEC
Confidence 467777777777765 44 6666777777777777776 445544455666666666666653 33 3445555555666
Q ss_pred cCcccc
Q 045673 108 NNNNLT 113 (132)
Q Consensus 108 ~~n~~~ 113 (132)
++|.++
T Consensus 123 ~~N~i~ 128 (198)
T 1ds9_A 123 SNNKIT 128 (198)
T ss_dssp SEEECC
T ss_pred CCCcCC
Confidence 555555
No 116
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.00 E-value=6.9e-12 Score=81.23 Aligned_cols=98 Identities=21% Similarity=0.285 Sum_probs=79.4
Q ss_pred CeEEEEcCCCCccccCcc------ccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCC
Q 045673 29 SVIRVDLGNAGLSGPLVP------QLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSL 102 (132)
Q Consensus 29 ~l~~L~l~~n~l~~~~~~------~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L 102 (132)
.++.++++.+.+.+..|. .+..++.|+.|++++|.+.+ .+ .+..+++|+.+++++|.+. .+|..+..+++|
T Consensus 19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L 95 (198)
T 1ds9_A 19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTL 95 (198)
T ss_dssp CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHC
T ss_pred cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcC
Confidence 455555555555555444 88899999999999999985 55 7788899999999999998 778877778999
Q ss_pred CEEEccCccccccCchHHHHhccCCceee
Q 045673 103 KFMRLNNNNLTGRIPREVIQLIINGSLRI 131 (132)
Q Consensus 103 ~~l~l~~n~~~~~~p~~~~~l~~~~~L~~ 131 (132)
+.|++++|.++ .+| .+..+..++.|.+
T Consensus 96 ~~L~L~~N~l~-~l~-~~~~l~~L~~L~l 122 (198)
T 1ds9_A 96 EELWISYNQIA-SLS-GIEKLVNLRVLYM 122 (198)
T ss_dssp SEEEEEEEECC-CHH-HHHHHHHSSEEEE
T ss_pred CEEECcCCcCC-cCC-ccccCCCCCEEEC
Confidence 99999999999 455 6888888887764
No 117
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.99 E-value=7.1e-11 Score=81.74 Aligned_cols=102 Identities=17% Similarity=0.120 Sum_probs=55.2
Q ss_pred CCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceec-CCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEE
Q 045673 28 NSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGS-IPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMR 106 (132)
Q Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~-~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~ 106 (132)
.+++.|++++|.+.+..+. +..+++|+.|++++|.+... .+..+..+++|+.+++++|.+.+..+..+..+++|+.|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 3455566666665544333 34556666666666665433 444455556666666666665544455555566666666
Q ss_pred ccCc-cccc-cCchHHHHhccCCcee
Q 045673 107 LNNN-NLTG-RIPREVIQLIINGSLR 130 (132)
Q Consensus 107 l~~n-~~~~-~~p~~~~~l~~~~~L~ 130 (132)
+++| .+++ .++..+..++.++.|.
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~ 174 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELN 174 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEE
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEc
Confidence 6665 4443 2344455555555544
No 118
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.98 E-value=1.1e-09 Score=79.18 Aligned_cols=94 Identities=30% Similarity=0.436 Sum_probs=67.3
Q ss_pred CCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEEc
Q 045673 28 NSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRL 107 (132)
Q Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~l 107 (132)
.+++.|++++|.+.+..+ +..+.+|+.|++++|.+.+..+ +..+++|+.+++++|.+.. .+. +..+++|+.|++
T Consensus 68 ~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~-~~~-~~~l~~L~~L~l 141 (466)
T 1o6v_A 68 NNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITD-IDP-LKNLTNLNRLEL 141 (466)
T ss_dssp TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CGG-GTTCTTCSEEEE
T ss_pred cCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCC-ChH-HcCCCCCCEEEC
Confidence 578888888888875433 7788888888888888774433 7778888888888888773 343 778888888888
Q ss_pred cCccccccCchHHHHhccCCce
Q 045673 108 NNNNLTGRIPREVIQLIINGSL 129 (132)
Q Consensus 108 ~~n~~~~~~p~~~~~l~~~~~L 129 (132)
++|.+. .++. +..+..++.|
T Consensus 142 ~~n~l~-~~~~-~~~l~~L~~L 161 (466)
T 1o6v_A 142 SSNTIS-DISA-LSGLTSLQQL 161 (466)
T ss_dssp EEEEEC-CCGG-GTTCTTCSEE
T ss_pred CCCccC-CChh-hccCCcccEe
Confidence 888887 3442 5555444444
No 119
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.98 E-value=9.5e-10 Score=81.75 Aligned_cols=89 Identities=26% Similarity=0.297 Sum_probs=55.1
Q ss_pred CCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCC-------cEEEcccccccccCCcccCCCC
Q 045673 28 NSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKL-------ISLGLFNNQLSGAIPASIGNLR 100 (132)
Q Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L-------~~l~ls~n~~~~~~p~~l~~l~ 100 (132)
.+++.|++++|.+++ +|. +. ++|+.|++++|.++ .+|. +.. +| +.+++++|.++ .+|..+..++
T Consensus 160 ~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~ 230 (571)
T 3cvr_A 160 TSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLD 230 (571)
T ss_dssp TTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSC
T ss_pred CCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCC
Confidence 456666666666654 333 33 66666677666666 4444 332 55 77777777776 5666666677
Q ss_pred CCCEEEccCccccccCchHHHHhcc
Q 045673 101 SLKFMRLNNNNLTGRIPREVIQLII 125 (132)
Q Consensus 101 ~L~~l~l~~n~~~~~~p~~~~~l~~ 125 (132)
+|+.|++++|++++.+|..+..+..
T Consensus 231 ~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 231 PTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp TTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred CCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 7777777777777666766666543
No 120
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.98 E-value=1.1e-09 Score=79.22 Aligned_cols=94 Identities=29% Similarity=0.470 Sum_probs=50.5
Q ss_pred CeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEEcc
Q 045673 29 SVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRLN 108 (132)
Q Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~l~ 108 (132)
+++.|++++|.+.+..+ +..++.|+.|++++|.+.+..+ +..+++|+.+++++|.+.+. ..+..+++|+.++++
T Consensus 288 ~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~ 361 (466)
T 1o6v_A 288 ALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAG 361 (466)
T ss_dssp TCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECC
T ss_pred ccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCC
Confidence 44555555555543222 4455555555555555553322 44555666666666665532 345666666777776
Q ss_pred CccccccCchHHHHhccCCcee
Q 045673 109 NNNLTGRIPREVIQLIINGSLR 130 (132)
Q Consensus 109 ~n~~~~~~p~~~~~l~~~~~L~ 130 (132)
+|++++..| +..+..++.|.
T Consensus 362 ~n~l~~~~~--~~~l~~L~~L~ 381 (466)
T 1o6v_A 362 HNQISDLTP--LANLTRITQLG 381 (466)
T ss_dssp SSCCCBCGG--GTTCTTCCEEE
T ss_pred CCccCccch--hhcCCCCCEEe
Confidence 666664443 55555555443
No 121
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.97 E-value=1.6e-09 Score=80.96 Aligned_cols=80 Identities=34% Similarity=0.406 Sum_probs=38.6
Q ss_pred CCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEEc
Q 045673 28 NSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRL 107 (132)
Q Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~l 107 (132)
.+|+.|++++|.+.+..+ +..++.|+.|++++|.+.. . +.+..+++|+.|++++|.+.. + ..+..+++|+.|+|
T Consensus 65 ~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~L 138 (605)
T 1m9s_A 65 PNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-L-SSLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYL 138 (605)
T ss_dssp TTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-TTSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEEC
T ss_pred CCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-C-hhhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEEC
Confidence 456666666666654332 4555555555555555542 1 234444555555555555442 1 22334444444444
Q ss_pred cCcccc
Q 045673 108 NNNNLT 113 (132)
Q Consensus 108 ~~n~~~ 113 (132)
++|.++
T Consensus 139 s~N~l~ 144 (605)
T 1m9s_A 139 GNNKIT 144 (605)
T ss_dssp CSSCCC
T ss_pred CCCccC
Confidence 444444
No 122
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.96 E-value=4.3e-11 Score=82.82 Aligned_cols=104 Identities=21% Similarity=0.223 Sum_probs=68.1
Q ss_pred CCeEEEEcCCCCcccc-CccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccc-cccc-cCCcccCCCCCCCE
Q 045673 28 NSVIRVDLGNAGLSGP-LVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNN-QLSG-AIPASIGNLRSLKF 104 (132)
Q Consensus 28 ~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n-~~~~-~~p~~l~~l~~L~~ 104 (132)
.+++.|++++|.+.+. ++..+..+++|+.|++++|.+++..+..+..+++|+.+++++| .+++ .++..+..+++|+.
T Consensus 93 ~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~ 172 (336)
T 2ast_B 93 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE 172 (336)
T ss_dssp BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCE
Confidence 5677778887777644 5556667777777777777776556666666777777777777 4553 23444566677777
Q ss_pred EEccCc-ccccc-CchHHHHhc-cCCceee
Q 045673 105 MRLNNN-NLTGR-IPREVIQLI-INGSLRI 131 (132)
Q Consensus 105 l~l~~n-~~~~~-~p~~~~~l~-~~~~L~~ 131 (132)
|++++| .+++. ++..+..++ .++.|.+
T Consensus 173 L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l 202 (336)
T 2ast_B 173 LNLSWCFDFTEKHVQVAVAHVSETITQLNL 202 (336)
T ss_dssp EECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred EcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence 777777 66632 455566666 5555543
No 123
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.96 E-value=2.2e-09 Score=79.76 Aligned_cols=91 Identities=26% Similarity=0.380 Sum_probs=57.3
Q ss_pred CCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCC-----
Q 045673 28 NSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSL----- 102 (132)
Q Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L----- 102 (132)
.+++.|++++|.+++ +|. .++.|+.|++++|.+++ +|. +. ++|+.+++++|.++ .+|. +.. +|
T Consensus 140 ~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~ 207 (571)
T 3cvr_A 140 ALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEE 207 (571)
T ss_dssp TTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------
T ss_pred ccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccc
Confidence 345556666666554 332 35566666777766663 444 43 67777777777777 5566 443 56
Q ss_pred --CEEEccCccccccCchHHHHhccCCceee
Q 045673 103 --KFMRLNNNNLTGRIPREVIQLIINGSLRI 131 (132)
Q Consensus 103 --~~l~l~~n~~~~~~p~~~~~l~~~~~L~~ 131 (132)
+.|++++|.++ .+|..++.+..++.|.+
T Consensus 208 ~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L 237 (571)
T 3cvr_A 208 TEIFFRCRENRIT-HIPENILSLDPTCTIIL 237 (571)
T ss_dssp CCEEEECCSSCCC-CCCGGGGGSCTTEEEEC
T ss_pred cceEEecCCCcce-ecCHHHhcCCCCCEEEe
Confidence 88888888888 67887777776666653
No 124
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.93 E-value=3.3e-09 Score=76.82 Aligned_cols=78 Identities=23% Similarity=0.326 Sum_probs=37.8
Q ss_pred CCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEEc
Q 045673 28 NSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRL 107 (132)
Q Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~l 107 (132)
.+++.|++++|.+.+. | .+..++.|+.|++++|.+++. + +..+++|+.+++++|.+.+ .+ ++.+++|++|++
T Consensus 42 ~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~L 113 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNC 113 (457)
T ss_dssp TTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCce-ee--cCCCCcCCEEEC
Confidence 3455555555555532 2 344555555555555555432 1 4444555555555555442 22 444445555555
Q ss_pred cCcccc
Q 045673 108 NNNNLT 113 (132)
Q Consensus 108 ~~n~~~ 113 (132)
++|.++
T Consensus 114 ~~N~l~ 119 (457)
T 3bz5_A 114 DTNKLT 119 (457)
T ss_dssp CSSCCS
T ss_pred CCCcCC
Confidence 555444
No 125
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.90 E-value=4.4e-10 Score=78.89 Aligned_cols=86 Identities=22% Similarity=0.205 Sum_probs=41.7
Q ss_pred CeEEEEcCCCCccccCccccccC-----CCCcEEEeeeCcceecCCcc----ccCC-cCCcEEEcccccccccCCcc---
Q 045673 29 SVIRVDLGNAGLSGPLVPQLGLL-----TNLQYLSVYKNNISGSIPSE----IGNL-KKLISLGLFNNQLSGAIPAS--- 95 (132)
Q Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l-----~~L~~l~l~~~~~~~~~~~~----~~~l-~~L~~l~ls~n~~~~~~p~~--- 95 (132)
+++.|++++|.+.+..+..+..+ +.|+.|++++|.++...+.. +... ++|+.+++++|.++...+..
T Consensus 52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 131 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ 131 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH
Confidence 45555555555554444444443 55555555555555333322 2222 45555555555555322222
Q ss_pred -cCC-CCCCCEEEccCccccc
Q 045673 96 -IGN-LRSLKFMRLNNNNLTG 114 (132)
Q Consensus 96 -l~~-l~~L~~l~l~~n~~~~ 114 (132)
+.. .++|+.|++++|.+.+
T Consensus 132 ~l~~~~~~L~~L~Ls~N~l~~ 152 (362)
T 3goz_A 132 AFSNLPASITSLNLRGNDLGI 152 (362)
T ss_dssp HHTTSCTTCCEEECTTSCGGG
T ss_pred HHHhCCCceeEEEccCCcCCH
Confidence 222 2456666666665553
No 126
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.86 E-value=5.1e-09 Score=78.57 Aligned_cols=87 Identities=26% Similarity=0.363 Sum_probs=47.3
Q ss_pred CeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEEcc
Q 045673 29 SVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRLN 108 (132)
Q Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~l~ 108 (132)
+++.|++++|.+++ +| ..+++|+.|++++|.++ .+|. .+++|+.+++++|.+. .+|..+..+++|+.|+++
T Consensus 222 ~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~ 292 (622)
T 3g06_A 222 GLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE 292 (622)
T ss_dssp TCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECC
T ss_pred CCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEec
Confidence 34445555555443 22 23455555555555555 2332 3455666666666666 556666666666666666
Q ss_pred CccccccCchHHHHhc
Q 045673 109 NNNLTGRIPREVIQLI 124 (132)
Q Consensus 109 ~n~~~~~~p~~~~~l~ 124 (132)
+|++++..|..+..+.
T Consensus 293 ~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 293 GNPLSERTLQALREIT 308 (622)
T ss_dssp SCCCCHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHhcc
Confidence 6666655555555444
No 127
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.86 E-value=4e-10 Score=79.58 Aligned_cols=103 Identities=17% Similarity=0.191 Sum_probs=58.2
Q ss_pred CCeEEEEcCCCCccc-----cCccccccCCCCcEEEeeeCcce----ecCCccccCCcCCcEEEccccccccc----CCc
Q 045673 28 NSVIRVDLGNAGLSG-----PLVPQLGLLTNLQYLSVYKNNIS----GSIPSEIGNLKKLISLGLFNNQLSGA----IPA 94 (132)
Q Consensus 28 ~~l~~L~l~~n~l~~-----~~~~~~~~l~~L~~l~l~~~~~~----~~~~~~~~~l~~L~~l~ls~n~~~~~----~p~ 94 (132)
.+++.|++++|.+.. ..+..+..++.|+.|++++|.++ ..++..+..+++|+.+++++|.+... ++.
T Consensus 187 ~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~ 266 (386)
T 2ca6_A 187 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVD 266 (386)
T ss_dssp TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHH
T ss_pred CCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHH
Confidence 356666666666651 12224556666666666666663 23455555666666666666666532 334
Q ss_pred cc--CCCCCCCEEEccCccccc----cCchHH-HHhccCCcee
Q 045673 95 SI--GNLRSLKFMRLNNNNLTG----RIPREV-IQLIINGSLR 130 (132)
Q Consensus 95 ~l--~~l~~L~~l~l~~n~~~~----~~p~~~-~~l~~~~~L~ 130 (132)
.+ +.+++|+.|++++|.+++ .+|..+ ..++.++.|.
T Consensus 267 ~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~ 309 (386)
T 2ca6_A 267 AFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLE 309 (386)
T ss_dssp HHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEE
T ss_pred HHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEE
Confidence 44 236667777777776664 255555 3345555554
No 128
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.84 E-value=1.8e-08 Score=75.66 Aligned_cols=71 Identities=25% Similarity=0.379 Sum_probs=55.3
Q ss_pred CCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEEccCccccccCchHHHHhccCCceee
Q 045673 52 TNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRLNNNNLTGRIPREVIQLIINGSLRI 131 (132)
Q Consensus 52 ~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~l~~n~~~~~~p~~~~~l~~~~~L~~ 131 (132)
+.|+.|++++|.+++ +| ..+++|+.+++++|.++ .+|. .+++|+.|++++|+++ .+|..+..+..++.|.+
T Consensus 221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L 291 (622)
T 3g06_A 221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL 291 (622)
T ss_dssp TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEEC
T ss_pred CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEe
Confidence 567777777777763 34 34577888888888887 5665 5688999999999999 88988988888887764
No 129
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.79 E-value=2.3e-09 Score=75.22 Aligned_cols=104 Identities=18% Similarity=0.189 Sum_probs=80.8
Q ss_pred CCeEEEEcCCCCccccCc----cccccCC-CCcEEEeeeCcceecCCccccCC-----cCCcEEEcccccccccCCcc--
Q 045673 28 NSVIRVDLGNAGLSGPLV----PQLGLLT-NLQYLSVYKNNISGSIPSEIGNL-----KKLISLGLFNNQLSGAIPAS-- 95 (132)
Q Consensus 28 ~~l~~L~l~~n~l~~~~~----~~~~~l~-~L~~l~l~~~~~~~~~~~~~~~l-----~~L~~l~ls~n~~~~~~p~~-- 95 (132)
.+++.|++++|.+++..+ ..+..++ .|+.|++++|.++...+..+..+ ++|+.+++++|.+++..+..
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 101 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV 101 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence 459999999999997666 6677788 89999999999987666666554 89999999999998554443
Q ss_pred --cCCC-CCCCEEEccCccccccCchHHHHh-----ccCCceee
Q 045673 96 --IGNL-RSLKFMRLNNNNLTGRIPREVIQL-----IINGSLRI 131 (132)
Q Consensus 96 --l~~l-~~L~~l~l~~n~~~~~~p~~~~~l-----~~~~~L~~ 131 (132)
+..+ ++|+.|++++|.+++..+..+... ..++.|.+
T Consensus 102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~L 145 (362)
T 3goz_A 102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNL 145 (362)
T ss_dssp HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEEC
T ss_pred HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEc
Confidence 4445 899999999999996655666554 35555543
No 130
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.79 E-value=9.8e-10 Score=77.61 Aligned_cols=104 Identities=18% Similarity=0.235 Sum_probs=68.8
Q ss_pred CCeEEEEcCCCCcc-ccCc---cccccCCCCcEEEeeeCccee-----cCCccccCCcCCcEEEccccccc----ccCCc
Q 045673 28 NSVIRVDLGNAGLS-GPLV---PQLGLLTNLQYLSVYKNNISG-----SIPSEIGNLKKLISLGLFNNQLS----GAIPA 94 (132)
Q Consensus 28 ~~l~~L~l~~n~l~-~~~~---~~~~~l~~L~~l~l~~~~~~~-----~~~~~~~~l~~L~~l~ls~n~~~----~~~p~ 94 (132)
++++.|++++|.+. ...+ ..+..++.|+.|++++|.+.. ..+..+..+++|+.+++++|.++ ..+|.
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~ 238 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence 46777777777775 2222 345567788888888887762 23335667788888888888874 35666
Q ss_pred ccCCCCCCCEEEccCcccccc----CchHHHH--hccCCceee
Q 045673 95 SIGNLRSLKFMRLNNNNLTGR----IPREVIQ--LIINGSLRI 131 (132)
Q Consensus 95 ~l~~l~~L~~l~l~~n~~~~~----~p~~~~~--l~~~~~L~~ 131 (132)
.+..+++|+.|++++|.+++. ++..+.. ++.++.|.+
T Consensus 239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L 281 (386)
T 2ca6_A 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRL 281 (386)
T ss_dssp HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEEC
T ss_pred HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEEC
Confidence 777888888888888888743 3344422 455555543
No 131
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.78 E-value=3.4e-08 Score=71.56 Aligned_cols=77 Identities=21% Similarity=0.214 Sum_probs=43.6
Q ss_pred CeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEEcc
Q 045673 29 SVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRLN 108 (132)
Q Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~l~ 108 (132)
+++.|++++|.+++. | +..++.|+.+++++|.+++. .+..+++|+.+++++|.+++ +| +..+++|+.++++
T Consensus 171 ~L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~ 241 (457)
T 3bz5_A 171 QLTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCS 241 (457)
T ss_dssp TCCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECC
T ss_pred cCCEEECCCCcccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEee
Confidence 455555555555432 2 44555555555555555532 24555666666666666663 44 5566666666666
Q ss_pred Cccccc
Q 045673 109 NNNLTG 114 (132)
Q Consensus 109 ~n~~~~ 114 (132)
+|++++
T Consensus 242 ~N~l~~ 247 (457)
T 3bz5_A 242 VNPLTE 247 (457)
T ss_dssp SSCCSC
T ss_pred CCcCCC
Confidence 666664
No 132
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.70 E-value=1.5e-08 Score=73.30 Aligned_cols=86 Identities=27% Similarity=0.356 Sum_probs=32.3
Q ss_pred CeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccc--cCCcccCCC-------
Q 045673 29 SVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSG--AIPASIGNL------- 99 (132)
Q Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~--~~p~~l~~l------- 99 (132)
+++.|++++|.+.+ +|.. ++.|+.+++++|.++ ..|. .+++|+.+++++|.+.+ .+|..+..+
T Consensus 318 ~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~ 389 (454)
T 1jl5_A 318 SLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLA 389 (454)
T ss_dssp TCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC---
T ss_pred cCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhccccc
Confidence 44555555555543 2221 355566666666555 2333 34566666666666654 445555444
Q ss_pred ------CCCCEEEccCccccc--cCchHHHH
Q 045673 100 ------RSLKFMRLNNNNLTG--RIPREVIQ 122 (132)
Q Consensus 100 ------~~L~~l~l~~n~~~~--~~p~~~~~ 122 (132)
++|+.|++++|++++ .+|..+..
T Consensus 390 ~i~~~~~~L~~L~ls~N~l~~~~~iP~sl~~ 420 (454)
T 1jl5_A 390 EVPELPQNLKQLHVETNPLREFPDIPESVED 420 (454)
T ss_dssp -------------------------------
T ss_pred ccccccCcCCEEECCCCcCCccccchhhHhh
Confidence 556666666666664 45544443
No 133
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.69 E-value=6.4e-08 Score=70.05 Aligned_cols=78 Identities=26% Similarity=0.289 Sum_probs=47.2
Q ss_pred CCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEEc
Q 045673 28 NSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRL 107 (132)
Q Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~l 107 (132)
.+++.|++++|.+.+ +| .+..++.|+.+++++|.+.+ .|.. ..+|+.+++++|.+.+ +| .+..+++|+.+++
T Consensus 131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l 202 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYA 202 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEEC
Confidence 456677777777664 44 46677777777777777663 3332 2356666666666653 44 3555666666666
Q ss_pred cCcccc
Q 045673 108 NNNNLT 113 (132)
Q Consensus 108 ~~n~~~ 113 (132)
++|.++
T Consensus 203 ~~N~l~ 208 (454)
T 1jl5_A 203 DNNSLK 208 (454)
T ss_dssp CSSCCS
T ss_pred CCCcCC
Confidence 555555
No 134
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.67 E-value=4.2e-08 Score=68.57 Aligned_cols=98 Identities=17% Similarity=0.061 Sum_probs=76.7
Q ss_pred EEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCc-ccCCCCCCCE-EEcc
Q 045673 31 IRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPA-SIGNLRSLKF-MRLN 108 (132)
Q Consensus 31 ~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~-~l~~l~~L~~-l~l~ 108 (132)
+.++.++++++ .+|..+ ...++.|++++|.++...+..+..+++|+.+++++|.+...+|. .|..++++.. +.+.
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 35788899988 466654 46899999999999966667789999999999999998655554 6788888775 5666
Q ss_pred CccccccCchHHHHhccCCceee
Q 045673 109 NNNLTGRIPREVIQLIINGSLRI 131 (132)
Q Consensus 109 ~n~~~~~~p~~~~~l~~~~~L~~ 131 (132)
.|+++...|+.+..+..++.|.+
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l 111 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLI 111 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEE
T ss_pred CCcccccCchhhhhccccccccc
Confidence 78999655677777887777754
No 135
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.63 E-value=6.7e-08 Score=66.95 Aligned_cols=101 Identities=9% Similarity=0.031 Sum_probs=84.4
Q ss_pred CCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCc-EEEcccccccccCCcccCCCCCCCEEE
Q 045673 28 NSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLI-SLGLFNNQLSGAIPASIGNLRSLKFMR 106 (132)
Q Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~-~l~ls~n~~~~~~p~~l~~l~~L~~l~ 106 (132)
.+++.+++.+|.+.......|..+..|+.+++..| +.......+..+.+|+ .+++.. .+...-+..|..+++|+.++
T Consensus 226 ~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~ 303 (329)
T 3sb4_A 226 PNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVL 303 (329)
T ss_dssp TTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEE
T ss_pred CCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEE
Confidence 57999999999998777788999999999999998 7767788899999999 999988 66645567899999999999
Q ss_pred ccCccccccCchHHHHhccCCcee
Q 045673 107 LNNNNLTGRIPREVIQLIINGSLR 130 (132)
Q Consensus 107 l~~n~~~~~~p~~~~~l~~~~~L~ 130 (132)
+..|+++..-+..|.+...++.+.
T Consensus 304 l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 304 ATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp ECSSCCCEECTTTTCTTCCCCEEE
T ss_pred eCCCccCccchhhhcCCcchhhhc
Confidence 999999943345677777777664
No 136
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.59 E-value=2.2e-09 Score=77.06 Aligned_cols=14 Identities=14% Similarity=0.392 Sum_probs=6.2
Q ss_pred CCCCEEEccCcccc
Q 045673 100 RSLKFMRLNNNNLT 113 (132)
Q Consensus 100 ~~L~~l~l~~n~~~ 113 (132)
+.|+.|++++|.++
T Consensus 370 ~~L~~L~L~~n~i~ 383 (461)
T 1z7x_W 370 SVLRVLWLADCDVS 383 (461)
T ss_dssp CCCCEEECTTSCCC
T ss_pred CceEEEECCCCCCC
Confidence 34444444444444
No 137
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.52 E-value=8.5e-09 Score=74.04 Aligned_cols=87 Identities=18% Similarity=0.143 Sum_probs=65.2
Q ss_pred CCeEEEEcCCCCcccc----CccccccCCCCcEEEeeeCcceecCCccccC-----CcCCcEEEcccccccc----cCCc
Q 045673 28 NSVIRVDLGNAGLSGP----LVPQLGLLTNLQYLSVYKNNISGSIPSEIGN-----LKKLISLGLFNNQLSG----AIPA 94 (132)
Q Consensus 28 ~~l~~L~l~~n~l~~~----~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~-----l~~L~~l~ls~n~~~~----~~p~ 94 (132)
.+++.|++++|.+++. ++..+..++.|+.|++++|.++...+..+.. .++|+.+++++|.++. .+|.
T Consensus 313 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~ 392 (461)
T 1z7x_W 313 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA 392 (461)
T ss_dssp CCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred ccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHH
Confidence 3677777777777643 3444556789999999999887544433322 5689999999999875 5677
Q ss_pred ccCCCCCCCEEEccCccccc
Q 045673 95 SIGNLRSLKFMRLNNNNLTG 114 (132)
Q Consensus 95 ~l~~l~~L~~l~l~~n~~~~ 114 (132)
.+..+++|+.+++++|++++
T Consensus 393 ~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 393 TLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp HHHHCCCCCEEECCSSSCCH
T ss_pred HHHhCCCccEEECCCCCCCH
Confidence 78889999999999999984
No 138
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.39 E-value=3.3e-07 Score=62.09 Aligned_cols=78 Identities=18% Similarity=0.185 Sum_probs=58.4
Q ss_pred cCCCCcEEEeeeCcceec--CCccccCCcCCcEEEcccccccccCCcccCCCC--CCCEEEccCccccccCch-------
Q 045673 50 LLTNLQYLSVYKNNISGS--IPSEIGNLKKLISLGLFNNQLSGAIPASIGNLR--SLKFMRLNNNNLTGRIPR------- 118 (132)
Q Consensus 50 ~l~~L~~l~l~~~~~~~~--~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~--~L~~l~l~~n~~~~~~p~------- 118 (132)
.++.|+.|++++|.+.+. ++..+..+++|+.|++++|.+.+. ..+..+. .|+.|++.+|.+.+.+|+
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 478999999999999863 345556789999999999999843 2333333 899999999999976662
Q ss_pred HHHHhccCCce
Q 045673 119 EVIQLIINGSL 129 (132)
Q Consensus 119 ~~~~l~~~~~L 129 (132)
.+..++.++.|
T Consensus 246 il~~~P~L~~L 256 (267)
T 3rw6_A 246 IRERFPKLLRL 256 (267)
T ss_dssp HHHHCTTCCEE
T ss_pred HHHHCcccCeE
Confidence 34556665554
No 139
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.32 E-value=1e-07 Score=67.35 Aligned_cols=62 Identities=15% Similarity=0.266 Sum_probs=30.6
Q ss_pred CCCcEEEeeeCcceec----CCccccCCcCCcEEEccccccccc----CCcccCCCCCCCEEEccCcccc
Q 045673 52 TNLQYLSVYKNNISGS----IPSEIGNLKKLISLGLFNNQLSGA----IPASIGNLRSLKFMRLNNNNLT 113 (132)
Q Consensus 52 ~~L~~l~l~~~~~~~~----~~~~~~~l~~L~~l~ls~n~~~~~----~p~~l~~l~~L~~l~l~~n~~~ 113 (132)
+.|+.|++++|.++.. +...+...++|+++++++|.++.. ++..+...++|+.|++++|.++
T Consensus 155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~ 224 (372)
T 3un9_A 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG 224 (372)
T ss_dssp CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence 4555555555555421 122223445566666666655421 1233444455666666666555
No 140
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.32 E-value=3e-07 Score=62.32 Aligned_cols=80 Identities=20% Similarity=0.167 Sum_probs=62.2
Q ss_pred CCCeEEEEcCCCCcccc--CccccccCCCCcEEEeeeCcceec-CCccccCCcCCcEEEcccccccccCCc-------cc
Q 045673 27 ENSVIRVDLGNAGLSGP--LVPQLGLLTNLQYLSVYKNNISGS-IPSEIGNLKKLISLGLFNNQLSGAIPA-------SI 96 (132)
Q Consensus 27 ~~~l~~L~l~~n~l~~~--~~~~~~~l~~L~~l~l~~~~~~~~-~~~~~~~l~~L~~l~ls~n~~~~~~p~-------~l 96 (132)
.++|+.|++++|.+.+. ++..+..+++|+.|++++|.+.+. ....+..+ +|+.+++++|.+.+.+|. .+
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~il 247 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAIR 247 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHHH
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHHHH
Confidence 46899999999999873 345667899999999999999854 12233344 899999999999866652 36
Q ss_pred CCCCCCCEEEc
Q 045673 97 GNLRSLKFMRL 107 (132)
Q Consensus 97 ~~l~~L~~l~l 107 (132)
..+++|+.||-
T Consensus 248 ~~~P~L~~LDg 258 (267)
T 3rw6_A 248 ERFPKLLRLDG 258 (267)
T ss_dssp HHCTTCCEESS
T ss_pred HHCcccCeECC
Confidence 67899988873
No 141
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.30 E-value=4.6e-08 Score=69.19 Aligned_cols=97 Identities=18% Similarity=0.228 Sum_probs=71.2
Q ss_pred CCCeEEEEcCCCCcccc----CccccccCCCCcEEEeeeCcceecC----CccccCCcCCcEEEccccccccc----CCc
Q 045673 27 ENSVIRVDLGNAGLSGP----LVPQLGLLTNLQYLSVYKNNISGSI----PSEIGNLKKLISLGLFNNQLSGA----IPA 94 (132)
Q Consensus 27 ~~~l~~L~l~~n~l~~~----~~~~~~~l~~L~~l~l~~~~~~~~~----~~~~~~l~~L~~l~ls~n~~~~~----~p~ 94 (132)
..+++.|++++|.++.. ++..+...+.|+.|++++|.++... ...+...++|+.+++++|.++.. ++.
T Consensus 154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~ 233 (372)
T 3un9_A 154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALAR 233 (372)
T ss_dssp TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHH
T ss_pred CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHH
Confidence 45789999999998642 3334467889999999999987432 44556678999999999999742 334
Q ss_pred ccCCCCCCCEEEccCccccccCchHHHHh
Q 045673 95 SIGNLRSLKFMRLNNNNLTGRIPREVIQL 123 (132)
Q Consensus 95 ~l~~l~~L~~l~l~~n~~~~~~p~~~~~l 123 (132)
.+...++|+.|++++|.+...-...+..+
T Consensus 234 ~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~ 262 (372)
T 3un9_A 234 AAREHPSLELLHLYFNELSSEGRQVLRDL 262 (372)
T ss_dssp HHHHCSSCCEEECTTSSCCHHHHHHHHHC
T ss_pred HHHhCCCCCEEeccCCCCCHHHHHHHHHH
Confidence 45567899999999999984333444443
No 142
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.07 E-value=1.6e-06 Score=55.19 Aligned_cols=86 Identities=12% Similarity=0.218 Sum_probs=66.1
Q ss_pred CCeEEEEcCCCCccccCccccccCCCCcEEEeeeCc-ceecCCccccCC----cCCcEEEccccc-ccccCCcccCCCCC
Q 045673 28 NSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNN-ISGSIPSEIGNL----KKLISLGLFNNQ-LSGAIPASIGNLRS 101 (132)
Q Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~-~~~~~~~~~~~l----~~L~~l~ls~n~-~~~~~p~~l~~l~~ 101 (132)
-.++.|+++++.++..--..+..+++|+.|++++|. ++...-..+..+ ++|++++++++. ++..--..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 469999999999986555667889999999999996 664444555554 479999999975 76432235678899
Q ss_pred CCEEEccCcc-cc
Q 045673 102 LKFMRLNNNN-LT 113 (132)
Q Consensus 102 L~~l~l~~n~-~~ 113 (132)
|+.|+++++. ++
T Consensus 141 L~~L~L~~c~~It 153 (176)
T 3e4g_A 141 LKYLFLSDLPGVK 153 (176)
T ss_dssp CCEEEEESCTTCC
T ss_pred CCEEECCCCCCCC
Confidence 9999999874 54
No 143
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.06 E-value=7.2e-07 Score=57.10 Aligned_cols=88 Identities=19% Similarity=0.244 Sum_probs=57.6
Q ss_pred CCCeEEEEcCCC-Ccccc----CccccccCCCCcEEEeeeCcceecC----CccccCCcCCcEEEccccccccc----CC
Q 045673 27 ENSVIRVDLGNA-GLSGP----LVPQLGLLTNLQYLSVYKNNISGSI----PSEIGNLKKLISLGLFNNQLSGA----IP 93 (132)
Q Consensus 27 ~~~l~~L~l~~n-~l~~~----~~~~~~~l~~L~~l~l~~~~~~~~~----~~~~~~l~~L~~l~ls~n~~~~~----~p 93 (132)
..+++.|++++| .+... +...+...+.|+.|++++|.+.... ...+...++|+.+++++|.+... +.
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~ 114 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV 114 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence 457888888888 77532 2334455677888888888876322 23334446788888888887632 33
Q ss_pred cccCCCCCCCEEEc--cCccccc
Q 045673 94 ASIGNLRSLKFMRL--NNNNLTG 114 (132)
Q Consensus 94 ~~l~~l~~L~~l~l--~~n~~~~ 114 (132)
..+...+.|+.|++ +.|.+..
T Consensus 115 ~~L~~n~~L~~L~L~~~~N~i~~ 137 (185)
T 1io0_A 115 EALQSNTSLIELRIDNQSQPLGN 137 (185)
T ss_dssp HGGGGCSSCCEEECCCCSSCCCH
T ss_pred HHHHhCCCceEEEecCCCCCCCH
Confidence 45666677888888 6777773
No 144
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.01 E-value=3.8e-07 Score=67.38 Aligned_cols=55 Identities=11% Similarity=0.077 Sum_probs=28.5
Q ss_pred CcCCcEEEccccccc----ccCCcccCCCCCCCEEEccCccccccCchHHHHhccCCcee
Q 045673 75 LKKLISLGLFNNQLS----GAIPASIGNLRSLKFMRLNNNNLTGRIPREVIQLIINGSLR 130 (132)
Q Consensus 75 l~~L~~l~ls~n~~~----~~~p~~l~~l~~L~~l~l~~n~~~~~~p~~~~~l~~~~~L~ 130 (132)
+++|+.+++++|.+. ..++..+..+++|+.|++++|.+. .+|..+..++.++.|.
T Consensus 191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~-~l~~~~~~~~~L~~L~ 249 (592)
T 3ogk_B 191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL-ELVGFFKAAANLEEFC 249 (592)
T ss_dssp CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG-GGHHHHHHCTTCCEEE
T ss_pred CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH-HHHHHHhhhhHHHhhc
Confidence 344555555544443 112222344566666666666666 3555566555555554
No 145
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.92 E-value=4.7e-06 Score=61.51 Aligned_cols=84 Identities=11% Similarity=0.095 Sum_probs=55.5
Q ss_pred CCeEEEEcCCCCccccCccccc-cCCCCcEEEeeeC-cceec-CCccccCCcCCcEEEcccccccccCCc----ccCCCC
Q 045673 28 NSVIRVDLGNAGLSGPLVPQLG-LLTNLQYLSVYKN-NISGS-IPSEIGNLKKLISLGLFNNQLSGAIPA----SIGNLR 100 (132)
Q Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~-~l~~L~~l~l~~~-~~~~~-~~~~~~~l~~L~~l~ls~n~~~~~~p~----~l~~l~ 100 (132)
++++.|+++++.+++..+..+. .+++|+.|++.+| .++.. .+.....+++|+.+++++|.+.+..+. ....++
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~ 184 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT 184 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence 5788888888887765555554 5788888888887 44422 223334677888888888876543222 223566
Q ss_pred CCCEEEccCcc
Q 045673 101 SLKFMRLNNNN 111 (132)
Q Consensus 101 ~L~~l~l~~n~ 111 (132)
+|+.|+++.|.
T Consensus 185 ~L~~L~l~~~~ 195 (594)
T 2p1m_B 185 SLVSLNISCLA 195 (594)
T ss_dssp CCCEEECTTCC
T ss_pred cCcEEEecccC
Confidence 78888887775
No 146
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.83 E-value=1.5e-05 Score=58.79 Aligned_cols=38 Identities=11% Similarity=-0.075 Sum_probs=19.7
Q ss_pred CcccCCCCCCCEEEccCccccccCc-hHHHHhccCCcee
Q 045673 93 PASIGNLRSLKFMRLNNNNLTGRIP-REVIQLIINGSLR 130 (132)
Q Consensus 93 p~~l~~l~~L~~l~l~~n~~~~~~p-~~~~~l~~~~~L~ 130 (132)
|..+..+++|+.|+++.|.+++... ..+..++.++.|.
T Consensus 286 ~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~ 324 (592)
T 3ogk_B 286 PILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLE 324 (592)
T ss_dssp GGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEE
T ss_pred HHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEe
Confidence 3344455667777777766553221 2234455555554
No 147
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.76 E-value=3.3e-06 Score=62.31 Aligned_cols=84 Identities=13% Similarity=0.167 Sum_probs=41.3
Q ss_pred CeEEEEcCCCCccccCcccccc-CCCCcEEEeeeCcceecCCccc-cCCcCCcEEEcccccccccCCc-ccCCCCCCCEE
Q 045673 29 SVIRVDLGNAGLSGPLVPQLGL-LTNLQYLSVYKNNISGSIPSEI-GNLKKLISLGLFNNQLSGAIPA-SIGNLRSLKFM 105 (132)
Q Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~-l~~L~~l~l~~~~~~~~~~~~~-~~l~~L~~l~ls~n~~~~~~p~-~l~~l~~L~~l 105 (132)
+++.|++++ .+++.....+.. ++.|+.|++++|.+++.....+ ..+++|+.+++++|.++..... ....+++|+.|
T Consensus 433 ~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L 511 (594)
T 2p1m_B 433 DLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSL 511 (594)
T ss_dssp TCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEE
T ss_pred CccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEE
Confidence 455555544 333222222332 5556666666666543333222 3456666666666665422111 23345666666
Q ss_pred EccCcccc
Q 045673 106 RLNNNNLT 113 (132)
Q Consensus 106 ~l~~n~~~ 113 (132)
++++|+++
T Consensus 512 ~l~~~~~~ 519 (594)
T 2p1m_B 512 WMSSCSVS 519 (594)
T ss_dssp EEESSCCB
T ss_pred eeeCCCCC
Confidence 66666654
No 148
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.76 E-value=2.7e-06 Score=54.39 Aligned_cols=87 Identities=21% Similarity=0.225 Sum_probs=67.0
Q ss_pred CCCeEEEEcCCCCcccc----CccccccCCCCcEEEeeeCcceec----CCccccCCcCCcEEEc--cccccccc----C
Q 045673 27 ENSVIRVDLGNAGLSGP----LVPQLGLLTNLQYLSVYKNNISGS----IPSEIGNLKKLISLGL--FNNQLSGA----I 92 (132)
Q Consensus 27 ~~~l~~L~l~~n~l~~~----~~~~~~~l~~L~~l~l~~~~~~~~----~~~~~~~l~~L~~l~l--s~n~~~~~----~ 92 (132)
..+++.|++++|.+... +...+...+.|+.|++++|.++.. +...+...++|+.+++ ++|.+... +
T Consensus 64 ~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l 143 (185)
T 1io0_A 64 NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEI 143 (185)
T ss_dssp CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHH
T ss_pred CCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHH
Confidence 46899999999999742 233445568899999999998753 3455666788999999 88998743 2
Q ss_pred CcccCCCCCCCEEEccCcccc
Q 045673 93 PASIGNLRSLKFMRLNNNNLT 113 (132)
Q Consensus 93 p~~l~~l~~L~~l~l~~n~~~ 113 (132)
...+...+.|+.|+++.|.+.
T Consensus 144 ~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 144 ANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHhCCCcCEEeccCCCCC
Confidence 344566789999999999887
No 149
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.72 E-value=8.9e-05 Score=51.16 Aligned_cols=78 Identities=10% Similarity=0.011 Sum_probs=66.7
Q ss_pred CCeEEEEcCCCCccccCccccccCCCCc-EEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEE
Q 045673 28 NSVIRVDLGNAGLSGPLVPQLGLLTNLQ-YLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMR 106 (132)
Q Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~-~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~ 106 (132)
.+++.+++..| +....+..|..+..|+ .+.+.+ .+....+..+..+.+|+.+++..|.+...-+..|..+++|+.++
T Consensus 250 ~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 250 KYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred CCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 47999999998 7766678899999999 999988 67767788999999999999999999855556899999999886
Q ss_pred c
Q 045673 107 L 107 (132)
Q Consensus 107 l 107 (132)
.
T Consensus 328 ~ 328 (329)
T 3sb4_A 328 K 328 (329)
T ss_dssp C
T ss_pred c
Confidence 4
No 150
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.49 E-value=3.5e-05 Score=49.04 Aligned_cols=81 Identities=12% Similarity=0.064 Sum_probs=57.1
Q ss_pred CCCCcEEEeeeCcceecCCccccCCcCCcEEEccccc-ccccCCcccCCC----CCCCEEEccCc-cccccCchHHHHhc
Q 045673 51 LTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQ-LSGAIPASIGNL----RSLKFMRLNNN-NLTGRIPREVIQLI 124 (132)
Q Consensus 51 l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~-~~~~~p~~l~~l----~~L~~l~l~~n-~~~~~~p~~~~~l~ 124 (132)
-..|+.++++++.++..--..+..+++|+.++++++. ++..--..+..+ ++|+.|+++++ +++..--..+..++
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 3569999999999886666677899999999999986 653322345554 47999999997 47732223455555
Q ss_pred cCCceee
Q 045673 125 INGSLRI 131 (132)
Q Consensus 125 ~~~~L~~ 131 (132)
.++.|.+
T Consensus 140 ~L~~L~L 146 (176)
T 3e4g_A 140 NLKYLFL 146 (176)
T ss_dssp TCCEEEE
T ss_pred CCCEEEC
Confidence 6666654
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.33 E-value=5.5e-05 Score=53.33 Aligned_cols=11 Identities=0% Similarity=0.042 Sum_probs=6.6
Q ss_pred CCeEEEEcCCC
Q 045673 28 NSVIRVDLGNA 38 (132)
Q Consensus 28 ~~l~~L~l~~n 38 (132)
++|+.|.+.++
T Consensus 172 P~L~~L~L~g~ 182 (362)
T 2ra8_A 172 PLLNNLKIKGT 182 (362)
T ss_dssp TTCCEEEEECC
T ss_pred CCCcEEEEeCC
Confidence 45666666555
No 152
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.22 E-value=0.00074 Score=48.13 Aligned_cols=65 Identities=14% Similarity=0.096 Sum_probs=34.9
Q ss_pred cccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEEccCcccc
Q 045673 46 PQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRLNNNNLT 113 (132)
Q Consensus 46 ~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~l~~n~~~ 113 (132)
..|..+..|+.+.+.. .+.......+..+.+|+.+.+..+ +...-...|..+ +|+.+++..|.+.
T Consensus 294 ~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 294 YCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP 358 (401)
T ss_dssp TTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred HHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence 3444555555555552 244344455555666666666433 332333456666 6777777666555
No 153
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.05 E-value=0.0013 Score=46.91 Aligned_cols=64 Identities=11% Similarity=0.099 Sum_probs=33.4
Q ss_pred ccccccCCCCcEEEeeeCcce-----ecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEEccC
Q 045673 45 VPQLGLLTNLQYLSVYKNNIS-----GSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRLNN 109 (132)
Q Consensus 45 ~~~~~~l~~L~~l~l~~~~~~-----~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~l~~ 109 (132)
...|..+..|+.+.+.++.+. ......+..+.+|+.+.+.. .+...-...|..+++|+.+.+..
T Consensus 264 ~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~ 332 (401)
T 4fdw_A 264 SRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPA 332 (401)
T ss_dssp TTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECT
T ss_pred hhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECc
Confidence 344555556666666555433 23344555556666666552 24422233555666666666643
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.04 E-value=0.00092 Score=47.08 Aligned_cols=40 Identities=20% Similarity=0.272 Sum_probs=20.9
Q ss_pred CcCCcEEEcccccccccCCccc---CCCCCCCEEEccCccccc
Q 045673 75 LKKLISLGLFNNQLSGAIPASI---GNLRSLKFMRLNNNNLTG 114 (132)
Q Consensus 75 l~~L~~l~ls~n~~~~~~p~~l---~~l~~L~~l~l~~n~~~~ 114 (132)
+++|+.+++.+|.+....+..+ ..++.|+.|+|+.|.+.+
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d 293 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD 293 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence 4566666666655542211111 235566666666666653
No 155
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.80 E-value=0.0029 Score=37.99 Aligned_cols=56 Identities=25% Similarity=0.274 Sum_probs=40.9
Q ss_pred EEEcCCCCcc-ccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEccccccc
Q 045673 32 RVDLGNAGLS-GPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLS 89 (132)
Q Consensus 32 ~L~l~~n~l~-~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~ 89 (132)
.++.++++++ ..+|..+ ...++.|++++|.++...+..+..+++|+.++|.+|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 6778888876 2345432 346888899999988666666777888888888888764
No 156
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.76 E-value=0.0028 Score=38.06 Aligned_cols=37 Identities=16% Similarity=0.058 Sum_probs=31.3
Q ss_pred CeEEEEcCCCCccccCccccccCCCCcEEEeeeCcce
Q 045673 29 SVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNIS 65 (132)
Q Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~ 65 (132)
+++.|+|++|.|+...+..|..++.|+.|++.+|.+.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 6888999999998766777888889999999988775
No 157
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.14 E-value=0.0012 Score=42.60 Aligned_cols=85 Identities=19% Similarity=0.173 Sum_probs=59.2
Q ss_pred CCCCeEEEEcCCC-Ccccc----CccccccCCCCcEEEeeeCcceecCCcc----ccCCcCCcEEEccccccccc----C
Q 045673 26 SENSVIRVDLGNA-GLSGP----LVPQLGLLTNLQYLSVYKNNISGSIPSE----IGNLKKLISLGLFNNQLSGA----I 92 (132)
Q Consensus 26 ~~~~l~~L~l~~n-~l~~~----~~~~~~~l~~L~~l~l~~~~~~~~~~~~----~~~l~~L~~l~ls~n~~~~~----~ 92 (132)
....++.|+++++ .+... +...+..-..|+.|++++|.+....-.. +..-..|+.++++.|.++.. +
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 3467999999985 77532 2344556688999999999987443222 33346799999999998742 2
Q ss_pred CcccCCCCCCCEEEccCc
Q 045673 93 PASIGNLRSLKFMRLNNN 110 (132)
Q Consensus 93 p~~l~~l~~L~~l~l~~n 110 (132)
.+.+..-+.|+.|+|++|
T Consensus 119 a~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHTTTTCCCSEEECCCC
T ss_pred HHHHhhCCceeEEECCCC
Confidence 345666678999999865
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.81 E-value=0.044 Score=38.24 Aligned_cols=36 Identities=22% Similarity=0.130 Sum_probs=15.7
Q ss_pred cccCCCCcEEEeeeCcceecCCccccCCcCCcEEEc
Q 045673 48 LGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGL 83 (132)
Q Consensus 48 ~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l 83 (132)
|..+..|+.+.+.++.+.......+..+.+|+.+.+
T Consensus 282 F~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~l 317 (379)
T 4h09_A 282 CSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTL 317 (379)
T ss_dssp TTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEEC
T ss_pred cccccccccccccccccceehhhhhcCCCCCCEEEc
Confidence 333444444444444443333344444444444444
No 159
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=95.49 E-value=0.034 Score=39.12 Aligned_cols=78 Identities=13% Similarity=-0.002 Sum_probs=42.5
Q ss_pred CeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEEcc
Q 045673 29 SVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRLN 108 (132)
Q Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~l~ 108 (132)
.++.+.+..+ +.......|..+..|+.+.+..+ +.......+..+.+|+.+.+..+ +...-...|..+++|+.+++.
T Consensus 298 ~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 298 SLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp TCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEE
T ss_pred cccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEEC
Confidence 3444444432 33233345556666666666543 44344556666667777666554 442333456667777777665
Q ss_pred C
Q 045673 109 N 109 (132)
Q Consensus 109 ~ 109 (132)
.
T Consensus 375 ~ 375 (394)
T 4fs7_A 375 K 375 (394)
T ss_dssp G
T ss_pred C
Confidence 4
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.30 E-value=0.043 Score=38.29 Aligned_cols=99 Identities=12% Similarity=0.053 Sum_probs=68.4
Q ss_pred CCeEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEEc
Q 045673 28 NSVIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRL 107 (132)
Q Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~l 107 (132)
..++.+.+..+ +.......|..+..++.+.+..+ +.......+..+.+|+.+.+..+.+...-...|..+.+|+.+.+
T Consensus 240 ~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~l 317 (379)
T 4h09_A 240 KALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTL 317 (379)
T ss_dssp SSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEEC
T ss_pred ccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEc
Confidence 35777777665 44344566777889999988765 44355667888999999999888777444557889999999999
Q ss_pred cCccccccCc-hHHHHhccCCcee
Q 045673 108 NNNNLTGRIP-REVIQLIINGSLR 130 (132)
Q Consensus 108 ~~n~~~~~~p-~~~~~l~~~~~L~ 130 (132)
..+ ++ .+. .+|.+...|+.+.
T Consensus 318 p~~-l~-~I~~~aF~~C~~L~~i~ 339 (379)
T 4h09_A 318 PTA-LK-TIQVYAFKNCKALSTIS 339 (379)
T ss_dssp CTT-CC-EECTTTTTTCTTCCCCC
T ss_pred Ccc-cc-EEHHHHhhCCCCCCEEE
Confidence 654 55 444 3455555555543
No 161
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=94.89 E-value=0.1 Score=36.70 Aligned_cols=61 Identities=8% Similarity=0.171 Sum_probs=25.3
Q ss_pred cccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEEccCc
Q 045673 48 LGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRLNNN 110 (132)
Q Consensus 48 ~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~l~~n 110 (132)
|..+..|+.+.+..+ +.......+..+.+|+.+.+..+ ++..-...|..+++|+.+++..+
T Consensus 307 F~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 307 FAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred ecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence 344444444444432 22233344444445555444322 22111224445555555554443
No 162
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=94.88 E-value=0.19 Score=35.27 Aligned_cols=96 Identities=13% Similarity=0.127 Sum_probs=60.2
Q ss_pred eEEEEcCCCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEEccC
Q 045673 30 VIRVDLGNAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRLNN 109 (132)
Q Consensus 30 l~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~l~~ 109 (132)
++.+.+..+-.. .....|..+..|+.+.+.. .+.......+..+.+|+.+.+..+ ++..-...|..+.+|+.+.+..
T Consensus 267 L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~ 343 (394)
T 4gt6_A 267 LASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPS 343 (394)
T ss_dssp CCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECT
T ss_pred ccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECc
Confidence 444554433322 2234566677788887753 344355667788889999988754 4423345788899999999965
Q ss_pred ccccccCc-hHHHHhccCCcee
Q 045673 110 NNLTGRIP-REVIQLIINGSLR 130 (132)
Q Consensus 110 n~~~~~~p-~~~~~l~~~~~L~ 130 (132)
+ ++ .+. .+|.+...|+.+.
T Consensus 344 s-v~-~I~~~aF~~C~~L~~i~ 363 (394)
T 4gt6_A 344 S-VT-KIPESAFSNCTALNNIE 363 (394)
T ss_dssp T-CC-BCCGGGGTTCTTCCEEE
T ss_pred c-cC-EEhHhHhhCCCCCCEEE
Confidence 4 55 454 4555566666554
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.15 E-value=0.012 Score=38.00 Aligned_cols=88 Identities=15% Similarity=0.185 Sum_probs=61.9
Q ss_pred CCCCeEEEEcCCCCcccc----CccccccCCCCcEEEeeeCcceec----CCccccCCcCCcEEEcccc---cccc----
Q 045673 26 SENSVIRVDLGNAGLSGP----LVPQLGLLTNLQYLSVYKNNISGS----IPSEIGNLKKLISLGLFNN---QLSG---- 90 (132)
Q Consensus 26 ~~~~l~~L~l~~n~l~~~----~~~~~~~l~~L~~l~l~~~~~~~~----~~~~~~~l~~L~~l~ls~n---~~~~---- 90 (132)
.+.+|+.|+|++|.+... +...+..-..|+.|+++.|.|+.. +-+.+..-..|+.++++++ .+..
T Consensus 68 ~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~ 147 (197)
T 1pgv_A 68 NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEM 147 (197)
T ss_dssp TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHH
T ss_pred hCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHH
Confidence 356899999999999743 223344568899999999999743 2234555567999999865 3332
Q ss_pred cCCcccCCCCCCCEEEccCcccc
Q 045673 91 AIPASIGNLRSLKFMRLNNNNLT 113 (132)
Q Consensus 91 ~~p~~l~~l~~L~~l~l~~n~~~ 113 (132)
.+...+..-+.|+.++++.|.+.
T Consensus 148 ~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 148 DMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHHHhCCCcCeEeccCCCcc
Confidence 12334556688999999877654
No 164
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=93.69 E-value=0.15 Score=35.89 Aligned_cols=80 Identities=13% Similarity=0.023 Sum_probs=53.1
Q ss_pred ccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccccccccCCcccCCCCCCCEEEccCccccccCc-hHHHHhcc
Q 045673 47 QLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNNQLSGAIPASIGNLRSLKFMRLNNNNLTGRIP-REVIQLII 125 (132)
Q Consensus 47 ~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n~~~~~~p~~l~~l~~L~~l~l~~n~~~~~~p-~~~~~l~~ 125 (132)
.|..+..|+.+.+..+ +.......+..+.+|+.+++..+ +...-...|..+++|+.+++..+ ++ .++ .+|.+...
T Consensus 292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~ 367 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LR-KIGANAFQGCIN 367 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTBTTCTT
T ss_pred cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-cc-EehHHHhhCCCC
Confidence 3555677777777654 44355667778888998888644 54333457888899999998765 55 343 45555556
Q ss_pred CCcee
Q 045673 126 NGSLR 130 (132)
Q Consensus 126 ~~~L~ 130 (132)
|+.+.
T Consensus 368 L~~i~ 372 (394)
T 4fs7_A 368 LKKVE 372 (394)
T ss_dssp CCEEE
T ss_pred CCEEE
Confidence 66554
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=61.03 E-value=19 Score=20.04 Aligned_cols=49 Identities=14% Similarity=-0.030 Sum_probs=34.1
Q ss_pred CCCccccCccccccCCCCcEEEeeeCcceecCCccccCCcCCcEEEcccc
Q 045673 37 NAGLSGPLVPQLGLLTNLQYLSVYKNNISGSIPSEIGNLKKLISLGLFNN 86 (132)
Q Consensus 37 ~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~ls~n 86 (132)
+..++..-...|..+..|+.+.+..+- ..+-...|..+.+|+.+.+...
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~~v-~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQPNI-GLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECTTS-SCCCTTSSTTCTTCCCEEECCS
T ss_pred CCccCEecHHHhcCCCCCcEEEcCCch-heEcHHHHhccCCccEEEEcCC
Confidence 444554455677788888888887753 3366677888888888887653
No 166
>3ox7_P MH027; urokinase-type plasminogen activator, peptidyl inhibitor, pharmacophore, hydrolase, hydrolase-hydrolase inhibitor COM; HET: PG4; 1.58A {Homo sapiens} PDB: 3oy5_P 3oy6_P
Probab=39.19 E-value=12 Score=14.54 Aligned_cols=11 Identities=18% Similarity=0.634 Sum_probs=7.6
Q ss_pred CCCCCCceeee
Q 045673 13 LVNPCTWFHVT 23 (132)
Q Consensus 13 ~~~~c~~~~~~ 23 (132)
++-.|.|.|..
T Consensus 4 adgacswrgle 14 (23)
T 3ox7_P 4 ADGACSWRGLE 14 (26)
T ss_pred cCcccccccch
Confidence 34678888765
Done!