BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045674
         (650 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
           A. Thaliana With Mn
 pdb|4G26|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
           A. Thaliana With Ca
          Length = 501

 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/127 (23%), Positives = 55/127 (43%), Gaps = 11/127 (8%)

Query: 297 CYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCI----------EGHAIFE 346
           C  +GD    L LY E    G+++  + YN+++  +C + +             G  IF+
Sbjct: 36  CSKKGDVLEALRLYDEARRNGVQLSQYHYNVLL-YVCSLAEAATESSPNPGLSRGFDIFK 94

Query: 347 SMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNE 406
            MI     PN A +T              A ++ ++MK  G++P   +YG  + G C+  
Sbjct: 95  QMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKG 154

Query: 407 RLEEAMQ 413
             ++A +
Sbjct: 155 DADKAYE 161



 Score = 32.3 bits (72), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 50/133 (37%), Gaps = 15/133 (11%)

Query: 434 IDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVL--IDALAKCGK-------LDEALAL 484
           +D   K G V EA  L++E    G     Y YNVL  + +LA+          L     +
Sbjct: 33  LDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDI 92

Query: 485 FKRMEDEGCDQTVYTYTILING---MFKEHRNEEALKLWDMMIDKGITPTAASFRALSIG 541
           FK+M     D+ V       NG      +   E A  +   M   GI P   S+     G
Sbjct: 93  FKQM---IVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFG 149

Query: 542 LCLSGKVARACKI 554
            C  G   +A ++
Sbjct: 150 FCRKGDADKAYEV 162



 Score = 30.8 bits (68), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 31/129 (24%), Positives = 53/129 (41%), Gaps = 13/129 (10%)

Query: 196 GMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMFIESSEL-----------VFKVME 244
           G V E L ++   + NG++ S Y YN L+   V S+   ++E            +FK M 
Sbjct: 40  GDVLEALRLYDEARRNGVQLSQYHYNVLL--YVCSLAEAATESSPNPGLSRGFDIFKQMI 97

Query: 245 NGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFD 304
             KV P+  T+    +        + A +  + M+A  +QP   +Y   +     +GD D
Sbjct: 98  VDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDAD 157

Query: 305 SCLSLYHEM 313
               +   M
Sbjct: 158 KAYEVDAHM 166


>pdb|4G23|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
           A. Thaliana With Mn
 pdb|4G25|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
           A. Thaliana, Semet Substituted Form With Sr
          Length = 501

 Score = 39.7 bits (91), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 28/130 (21%), Positives = 53/130 (40%), Gaps = 11/130 (8%)

Query: 294 IQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCI----------EGHA 343
           +  C  +GD    L LY E    G+++  + YN+++  +C + +             G  
Sbjct: 33  LDXCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLL-YVCSLAEAATESSPNPGLSRGFD 91

Query: 344 IFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLC 403
           IF+  I     PN A +T              A +  ++ K  G++P   +YG  + G C
Sbjct: 92  IFKQXIVDKVVPNEATFTNGARLAVAKDDPEXAFDXVKQXKAFGIQPRLRSYGPALFGFC 151

Query: 404 KNERLEEAMQ 413
           +    ++A +
Sbjct: 152 RKGDADKAYE 161


>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
           Reveals Structural Similarities To Importin Alpha.
 pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
           Reveals Structural Similarities To Importin Alpha
          Length = 388

 Score = 35.8 bits (81), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 58/273 (21%), Positives = 115/273 (42%), Gaps = 50/273 (18%)

Query: 254 TYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKIT-YMTLIQACYLEGDFDSCLSLYHE 312
            Y+ +   Y + G+ Q+A+E +R   A  ++PD I  Y+ L  A    GD +  +  Y  
Sbjct: 69  AYSNLGNVYKERGQLQEAIEHYR--HALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVS 126

Query: 313 MDEKGIEIPSHAYNLVIGGLCK-VGKCIEGHAIFESMIRRGCQPNVA------------- 358
             +   ++  +     +G L K +G+  E  A +   I    QPN A             
Sbjct: 127 ALQYNPDL--YCVRSDLGNLLKALGRLEEAKACYLKAIE--TQPNFAVAWSNLGCVFNAQ 182

Query: 359 --IYTAL-------------IDSYAKLGSMNEAINIFER-----MKYEGVEPDE-VTYGV 397
             I+ A+             +D+Y  LG++ +   IF+R     ++   + P+  V +G 
Sbjct: 183 GEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGN 242

Query: 398 IISGLCKNERLEEAMQYFEFCRANGVAVNAMF---YSSLIDGLGKAGRVDEAEELFEEMV 454
           +     +   ++ A+  +       + +   F   Y +L + L + G V EAE+ +   +
Sbjct: 243 LACVYYEQGLIDLAIDTYR----RAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTAL 298

Query: 455 EKGCPRDSYCYNVLIDALAKCGKLDEALALFKR 487
            + CP  +   N L +   + G ++EA+ L+++
Sbjct: 299 -RLCPTHADSLNNLANIKREQGNIEEAVRLYRK 330


>pdb|4A1S|A Chain A, Crystallographic Structure Of The Pins:insc Complex
 pdb|4A1S|B Chain B, Crystallographic Structure Of The Pins:insc Complex
          Length = 411

 Score = 32.7 bits (73), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 332 LCKVGKCIEGHAIFESMIRRGCQ---PNVAIYTALIDSYAKLGSMNEAI 377
           LC  G C  G A F++ I+ G +      AIY+ L ++Y  LG  N+A+
Sbjct: 58  LCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAM 106


>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70
 pdb|2GW1|B Chain B, Crystal Structure Of The Yeast Tom70
          Length = 514

 Score = 31.6 bits (70), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 7/66 (10%)

Query: 256 NTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDE 315
           N +++ Y + GK     +K + ++  N+ P    Y+ L    Y E  FD C +L+ E   
Sbjct: 314 NFILQNYDQAGKD---FDKAKELDPENIFP----YIQLACLAYRENKFDDCETLFSEAKR 366

Query: 316 KGIEIP 321
           K  E P
Sbjct: 367 KFPEAP 372


>pdb|3SPA|A Chain A, Crystal Structure Of Human Mitochondrial Rna Polymerase
          Length = 1134

 Score = 30.0 bits (66), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 33/153 (21%), Positives = 63/153 (41%), Gaps = 28/153 (18%)

Query: 68  LVSCPQNLNPSPWVRQILNLLDGSSDMEANLDSFCRKFLIKLSPNFVSFVLRNHDVSKRP 127
           L  C +    SPW  Q+  LL  +                   P  +S      DV + P
Sbjct: 79  LEDCTRQAPESPWEEQLARLLQEA-------------------PGKLSL-----DVEQAP 114

Query: 128 NVGLRLFTWAARQKKYSHNLECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANS 187
           +        + +Q++     +C + L D L L      + +V +  ++K  L+T+   N+
Sbjct: 115 SGQHSQAQLSGQQQRLLAFFKCCL-LTDQLPL---AHHLLVVHHGQRQKRKLLTLDMYNA 170

Query: 188 LIKSFGGLGMVEELLWVWRSMKENGIEPSLYTY 220
           ++  +   G  +EL++V   +K+ G+ P L +Y
Sbjct: 171 VMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203


>pdb|3ESK|A Chain A, Structure Of Hop Tpr2a Domain In Complex With The
           Non-Cognate Hsc70 Peptide Ligand
          Length = 129

 Score = 30.0 bits (66), Expect = 4.3,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 5/43 (11%)

Query: 279 EARNVQPDKITYMTLIQACYLE-GDFDSCLSLYHEMDEKGIEI 320
           +A+ + P  +TY+T   A Y E GD++ C     E+ EK IE+
Sbjct: 29  KAKELDPTNMTYITNQAAVYFEKGDYNKC----RELCEKAIEV 67


>pdb|1ELR|A Chain A, Crystal Structure Of The Tpr2a Domain Of Hop In Complex
           With The Hsp90 Peptide Meevd
          Length = 131

 Score = 30.0 bits (66), Expect = 4.4,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 5/43 (11%)

Query: 279 EARNVQPDKITYMTLIQACYLE-GDFDSCLSLYHEMDEKGIEI 320
           +A+ + P  +TY+T   A Y E GD++ C     E+ EK IE+
Sbjct: 29  KAKELDPTNMTYITNQAAVYFEKGDYNKC----RELCEKAIEV 67


>pdb|2Q7F|A Chain A, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
           Peptide- Binding Site
 pdb|2Q7F|B Chain B, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
           Peptide- Binding Site
          Length = 243

 Score = 29.6 bits (65), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 3/59 (5%)

Query: 472 LAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITP 530
           LA  G LDEAL+ F  + ++        Y   +   +KE+R E+AL++ D  ID  I P
Sbjct: 169 LANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENR-EKALEMLDKAID--IQP 224


>pdb|1NF4|A Chain A, X-Ray Structure Of The Desulfovibrio Desulfuricans
           Bacterioferritin: The Diiron Site In Different States
           (Reduced Structure)
 pdb|1NF4|B Chain B, X-Ray Structure Of The Desulfovibrio Desulfuricans
           Bacterioferritin: The Diiron Site In Different States
           (Reduced Structure)
 pdb|1NF4|C Chain C, X-Ray Structure Of The Desulfovibrio Desulfuricans
           Bacterioferritin: The Diiron Site In Different States
           (Reduced Structure)
 pdb|1NF4|D Chain D, X-Ray Structure Of The Desulfovibrio Desulfuricans
           Bacterioferritin: The Diiron Site In Different States
           (Reduced Structure)
 pdb|1NF4|E Chain E, X-Ray Structure Of The Desulfovibrio Desulfuricans
           Bacterioferritin: The Diiron Site In Different States
           (Reduced Structure)
 pdb|1NF4|F Chain F, X-Ray Structure Of The Desulfovibrio Desulfuricans
           Bacterioferritin: The Diiron Site In Different States
           (Reduced Structure)
 pdb|1NF4|G Chain G, X-Ray Structure Of The Desulfovibrio Desulfuricans
           Bacterioferritin: The Diiron Site In Different States
           (Reduced Structure)
 pdb|1NF4|H Chain H, X-Ray Structure Of The Desulfovibrio Desulfuricans
           Bacterioferritin: The Diiron Site In Different States
           (Reduced Structure)
 pdb|1NF4|I Chain I, X-Ray Structure Of The Desulfovibrio Desulfuricans
           Bacterioferritin: The Diiron Site In Different States
           (Reduced Structure)
 pdb|1NF4|J Chain J, X-Ray Structure Of The Desulfovibrio Desulfuricans
           Bacterioferritin: The Diiron Site In Different States
           (Reduced Structure)
 pdb|1NF4|K Chain K, X-Ray Structure Of The Desulfovibrio Desulfuricans
           Bacterioferritin: The Diiron Site In Different States
           (Reduced Structure)
 pdb|1NF4|L Chain L, X-Ray Structure Of The Desulfovibrio Desulfuricans
           Bacterioferritin: The Diiron Site In Different States
           (Reduced Structure)
 pdb|1NF4|M Chain M, X-Ray Structure Of The Desulfovibrio Desulfuricans
           Bacterioferritin: The Diiron Site In Different States
           (Reduced Structure)
 pdb|1NF4|N Chain N, X-Ray Structure Of The Desulfovibrio Desulfuricans
           Bacterioferritin: The Diiron Site In Different States
           (Reduced Structure)
 pdb|1NF4|O Chain O, X-Ray Structure Of The Desulfovibrio Desulfuricans
           Bacterioferritin: The Diiron Site In Different States
           (Reduced Structure)
 pdb|1NF4|P Chain P, X-Ray Structure Of The Desulfovibrio Desulfuricans
           Bacterioferritin: The Diiron Site In Different States
           (Reduced Structure)
 pdb|1NF6|A Chain A, X-ray Structure Of The Desulfovibrio Desulfuricans
           Bacterioferritin: The Diiron Site In Different Catalytic
           States ("cycled" Structure: Reduced In Solution And
           Allowed To Reoxidise Before Crystallisation)
 pdb|1NF6|B Chain B, X-ray Structure Of The Desulfovibrio Desulfuricans
           Bacterioferritin: The Diiron Site In Different Catalytic
           States ("cycled" Structure: Reduced In Solution And
           Allowed To Reoxidise Before Crystallisation)
 pdb|1NF6|C Chain C, X-ray Structure Of The Desulfovibrio Desulfuricans
           Bacterioferritin: The Diiron Site In Different Catalytic
           States ("cycled" Structure: Reduced In Solution And
           Allowed To Reoxidise Before Crystallisation)
 pdb|1NF6|D Chain D, X-ray Structure Of The Desulfovibrio Desulfuricans
           Bacterioferritin: The Diiron Site In Different Catalytic
           States ("cycled" Structure: Reduced In Solution And
           Allowed To Reoxidise Before Crystallisation)
 pdb|1NF6|E Chain E, X-ray Structure Of The Desulfovibrio Desulfuricans
           Bacterioferritin: The Diiron Site In Different Catalytic
           States ("cycled" Structure: Reduced In Solution And
           Allowed To Reoxidise Before Crystallisation)
 pdb|1NF6|F Chain F, X-ray Structure Of The Desulfovibrio Desulfuricans
           Bacterioferritin: The Diiron Site In Different Catalytic
           States ("cycled" Structure: Reduced In Solution And
           Allowed To Reoxidise Before Crystallisation)
 pdb|1NF6|G Chain G, X-ray Structure Of The Desulfovibrio Desulfuricans
           Bacterioferritin: The Diiron Site In Different Catalytic
           States ("cycled" Structure: Reduced In Solution And
           Allowed To Reoxidise Before Crystallisation)
 pdb|1NF6|H Chain H, X-ray Structure Of The Desulfovibrio Desulfuricans
           Bacterioferritin: The Diiron Site In Different Catalytic
           States ("cycled" Structure: Reduced In Solution And
           Allowed To Reoxidise Before Crystallisation)
 pdb|1NF6|I Chain I, X-ray Structure Of The Desulfovibrio Desulfuricans
           Bacterioferritin: The Diiron Site In Different Catalytic
           States ("cycled" Structure: Reduced In Solution And
           Allowed To Reoxidise Before Crystallisation)
 pdb|1NF6|J Chain J, X-ray Structure Of The Desulfovibrio Desulfuricans
           Bacterioferritin: The Diiron Site In Different Catalytic
           States ("cycled" Structure: Reduced In Solution And
           Allowed To Reoxidise Before Crystallisation)
 pdb|1NF6|K Chain K, X-ray Structure Of The Desulfovibrio Desulfuricans
           Bacterioferritin: The Diiron Site In Different Catalytic
           States ("cycled" Structure: Reduced In Solution And
           Allowed To Reoxidise Before Crystallisation)
 pdb|1NF6|L Chain L, X-ray Structure Of The Desulfovibrio Desulfuricans
           Bacterioferritin: The Diiron Site In Different Catalytic
           States ("cycled" Structure: Reduced In Solution And
           Allowed To Reoxidise Before Crystallisation)
 pdb|1NF6|M Chain M, X-ray Structure Of The Desulfovibrio Desulfuricans
           Bacterioferritin: The Diiron Site In Different Catalytic
           States ("cycled" Structure: Reduced In Solution And
           Allowed To Reoxidise Before Crystallisation)
 pdb|1NF6|N Chain N, X-ray Structure Of The Desulfovibrio Desulfuricans
           Bacterioferritin: The Diiron Site In Different Catalytic
           States ("cycled" Structure: Reduced In Solution And
           Allowed To Reoxidise Before Crystallisation)
 pdb|1NF6|O Chain O, X-ray Structure Of The Desulfovibrio Desulfuricans
           Bacterioferritin: The Diiron Site In Different Catalytic
           States ("cycled" Structure: Reduced In Solution And
           Allowed To Reoxidise Before Crystallisation)
 pdb|1NF6|P Chain P, X-ray Structure Of The Desulfovibrio Desulfuricans
           Bacterioferritin: The Diiron Site In Different Catalytic
           States ("cycled" Structure: Reduced In Solution And
           Allowed To Reoxidise Before Crystallisation)
 pdb|1NFV|A Chain A, X-Ray Structure Of Desulfovibrio Desulfuricans
           Bacterioferritin: The Diiron Centre In Different
           Catalytic States (As-Isolated Structure)
 pdb|1NFV|B Chain B, X-Ray Structure Of Desulfovibrio Desulfuricans
           Bacterioferritin: The Diiron Centre In Different
           Catalytic States (As-Isolated Structure)
 pdb|1NFV|C Chain C, X-Ray Structure Of Desulfovibrio Desulfuricans
           Bacterioferritin: The Diiron Centre In Different
           Catalytic States (As-Isolated Structure)
 pdb|1NFV|D Chain D, X-Ray Structure Of Desulfovibrio Desulfuricans
           Bacterioferritin: The Diiron Centre In Different
           Catalytic States (As-Isolated Structure)
 pdb|1NFV|E Chain E, X-Ray Structure Of Desulfovibrio Desulfuricans
           Bacterioferritin: The Diiron Centre In Different
           Catalytic States (As-Isolated Structure)
 pdb|1NFV|F Chain F, X-Ray Structure Of Desulfovibrio Desulfuricans
           Bacterioferritin: The Diiron Centre In Different
           Catalytic States (As-Isolated Structure)
 pdb|1NFV|G Chain G, X-Ray Structure Of Desulfovibrio Desulfuricans
           Bacterioferritin: The Diiron Centre In Different
           Catalytic States (As-Isolated Structure)
 pdb|1NFV|H Chain H, X-Ray Structure Of Desulfovibrio Desulfuricans
           Bacterioferritin: The Diiron Centre In Different
           Catalytic States (As-Isolated Structure)
 pdb|1NFV|I Chain I, X-Ray Structure Of Desulfovibrio Desulfuricans
           Bacterioferritin: The Diiron Centre In Different
           Catalytic States (As-Isolated Structure)
 pdb|1NFV|J Chain J, X-Ray Structure Of Desulfovibrio Desulfuricans
           Bacterioferritin: The Diiron Centre In Different
           Catalytic States (As-Isolated Structure)
 pdb|1NFV|K Chain K, X-Ray Structure Of Desulfovibrio Desulfuricans
           Bacterioferritin: The Diiron Centre In Different
           Catalytic States (As-Isolated Structure)
 pdb|1NFV|L Chain L, X-Ray Structure Of Desulfovibrio Desulfuricans
           Bacterioferritin: The Diiron Centre In Different
           Catalytic States (As-Isolated Structure)
 pdb|1NFV|M Chain M, X-Ray Structure Of Desulfovibrio Desulfuricans
           Bacterioferritin: The Diiron Centre In Different
           Catalytic States (As-Isolated Structure)
 pdb|1NFV|N Chain N, X-Ray Structure Of Desulfovibrio Desulfuricans
           Bacterioferritin: The Diiron Centre In Different
           Catalytic States (As-Isolated Structure)
 pdb|1NFV|O Chain O, X-Ray Structure Of Desulfovibrio Desulfuricans
           Bacterioferritin: The Diiron Centre In Different
           Catalytic States (As-Isolated Structure)
 pdb|1NFV|P Chain P, X-Ray Structure Of Desulfovibrio Desulfuricans
           Bacterioferritin: The Diiron Centre In Different
           Catalytic States (As-Isolated Structure)
          Length = 179

 Score = 28.9 bits (63), Expect = 8.6,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 11/77 (14%)

Query: 370 LGSMNEAINIFERMKYEGVEPDEVTYGVIISGLC-----------KNERLEEAMQYFEFC 418
           +  M  A N  ER+K  G EP     G +++G             ++  +E   Q+ + C
Sbjct: 54  IDEMRHAENFAERIKELGGEPTTQKEGKVVTGQAVPVIYESDADQEDATIEAYSQFLKVC 113

Query: 419 RANGVAVNAMFYSSLID 435
           +  G  V A  +  +I+
Sbjct: 114 KEQGDIVTARLFERIIE 130


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.138    0.413 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,668,957
Number of Sequences: 62578
Number of extensions: 774527
Number of successful extensions: 1717
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1694
Number of HSP's gapped (non-prelim): 25
length of query: 650
length of database: 14,973,337
effective HSP length: 105
effective length of query: 545
effective length of database: 8,402,647
effective search space: 4579442615
effective search space used: 4579442615
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)