Query 045674
Match_columns 650
No_of_seqs 834 out of 3882
Neff 11.4
Searched_HMMs 46136
Date Fri Mar 29 04:22:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045674.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045674hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 4E-66 8.6E-71 552.6 69.5 536 98-639 357-918 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 1.7E-63 3.7E-68 532.4 66.5 492 145-640 368-886 (1060)
3 PLN03077 Protein ECB2; Provisi 100.0 1.5E-64 3.2E-69 553.1 59.1 541 82-640 55-629 (857)
4 PLN03077 Protein ECB2; Provisi 100.0 1.4E-62 3E-67 537.5 59.6 524 88-633 162-689 (857)
5 PLN03081 pentatricopeptide (PP 100.0 3.4E-61 7.3E-66 514.0 57.6 509 114-637 90-611 (697)
6 PLN03081 pentatricopeptide (PP 100.0 7.3E-61 1.6E-65 511.4 58.0 473 146-633 86-560 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 2.7E-34 5.9E-39 323.3 72.5 531 90-636 341-872 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 2E-34 4.3E-39 324.4 70.8 530 84-629 369-899 (899)
9 PRK11447 cellulose synthase su 100.0 1.2E-27 2.5E-32 268.7 69.3 539 80-633 30-703 (1157)
10 PRK11447 cellulose synthase su 100.0 1.2E-26 2.6E-31 260.6 66.9 529 87-629 121-739 (1157)
11 KOG4626 O-linked N-acetylgluco 100.0 1.8E-26 3.9E-31 218.4 42.2 448 150-613 51-502 (966)
12 KOG4626 O-linked N-acetylgluco 100.0 3E-27 6.5E-32 223.6 36.9 447 185-644 51-500 (966)
13 PRK09782 bacteriophage N4 rece 100.0 3.4E-23 7.4E-28 221.7 62.3 519 90-634 56-710 (987)
14 KOG2002 TPR-containing nuclear 100.0 1.3E-22 2.9E-27 202.6 52.2 510 123-640 176-755 (1018)
15 PRK09782 bacteriophage N4 rece 100.0 1.7E-21 3.7E-26 208.8 63.4 527 82-633 82-743 (987)
16 TIGR00990 3a0801s09 mitochondr 99.9 1.5E-22 3.3E-27 213.8 52.9 432 149-596 129-572 (615)
17 TIGR00990 3a0801s09 mitochondr 99.9 9E-22 1.9E-26 207.9 55.2 432 185-633 130-574 (615)
18 KOG2002 TPR-containing nuclear 99.9 1.5E-21 3.2E-26 195.3 49.6 528 93-633 214-801 (1018)
19 PRK15174 Vi polysaccharide exp 99.9 3.1E-21 6.7E-26 202.7 47.5 330 225-563 50-383 (656)
20 PRK15174 Vi polysaccharide exp 99.9 4.4E-21 9.5E-26 201.6 45.4 362 227-596 15-382 (656)
21 PRK10049 pgaA outer membrane p 99.9 3.3E-20 7.2E-25 199.4 52.0 416 179-634 12-460 (765)
22 PRK10049 pgaA outer membrane p 99.9 6.4E-20 1.4E-24 197.2 52.9 432 143-611 11-470 (765)
23 PRK11788 tetratricopeptide rep 99.9 3.9E-21 8.4E-26 193.2 37.8 299 331-635 44-352 (389)
24 PRK14574 hmsH outer membrane p 99.9 1.6E-18 3.5E-23 182.3 57.7 443 146-596 33-514 (822)
25 PRK11788 tetratricopeptide rep 99.9 8.9E-21 1.9E-25 190.6 36.5 300 297-602 45-354 (389)
26 PRK14574 hmsH outer membrane p 99.9 3E-18 6.4E-23 180.3 55.1 446 184-637 36-520 (822)
27 KOG0495 HAT repeat protein [RN 99.9 1.1E-16 2.3E-21 153.7 54.1 463 156-633 415-883 (913)
28 KOG0495 HAT repeat protein [RN 99.9 6E-17 1.3E-21 155.4 51.4 467 160-645 389-861 (913)
29 KOG1915 Cell cycle control pro 99.9 2E-16 4.3E-21 146.2 49.7 470 147-630 73-585 (677)
30 KOG2076 RNA polymerase III tra 99.9 1.1E-15 2.3E-20 152.9 52.5 537 90-632 151-851 (895)
31 KOG2076 RNA polymerase III tra 99.9 7.1E-16 1.5E-20 154.1 51.1 509 124-638 152-778 (895)
32 KOG2003 TPR repeat-containing 99.8 3.1E-17 6.7E-22 150.7 35.5 472 123-616 213-709 (840)
33 KOG2003 TPR repeat-containing 99.8 3.7E-16 8E-21 143.7 38.1 481 146-643 200-702 (840)
34 KOG4422 Uncharacterized conser 99.8 3E-15 6.6E-20 136.8 41.4 323 151-494 120-465 (625)
35 KOG1915 Cell cycle control pro 99.8 4E-14 8.7E-19 131.2 47.3 444 179-635 70-541 (677)
36 KOG4422 Uncharacterized conser 99.8 1.4E-14 3.1E-19 132.5 42.5 434 182-636 116-596 (625)
37 KOG0547 Translocase of outer m 99.8 2E-15 4.3E-20 140.5 36.1 225 367-596 336-567 (606)
38 KOG0547 Translocase of outer m 99.8 1E-15 2.3E-20 142.3 34.0 421 187-630 120-566 (606)
39 KOG1155 Anaphase-promoting com 99.8 2E-14 4.4E-19 133.0 41.3 296 328-630 233-536 (559)
40 KOG1126 DNA-binding cell divis 99.8 7.6E-17 1.6E-21 156.1 25.3 290 337-636 334-626 (638)
41 KOG1155 Anaphase-promoting com 99.8 4.6E-13 9.9E-18 124.2 46.2 365 213-594 160-535 (559)
42 PF13429 TPR_15: Tetratricopep 99.8 3.2E-18 6.9E-23 162.5 13.2 262 362-629 13-276 (280)
43 KOG1173 Anaphase-promoting com 99.8 2.1E-14 4.6E-19 136.3 38.3 471 116-604 21-525 (611)
44 TIGR00540 hemY_coli hemY prote 99.8 8.5E-15 1.8E-19 146.2 36.7 292 333-630 95-399 (409)
45 PRK10747 putative protoheme IX 99.8 1.7E-14 3.7E-19 143.2 38.0 285 335-631 97-391 (398)
46 KOG1173 Anaphase-promoting com 99.7 8.8E-14 1.9E-18 132.2 39.1 473 146-634 15-522 (611)
47 KOG1126 DNA-binding cell divis 99.7 1.3E-15 2.7E-20 147.7 24.6 285 302-596 334-621 (638)
48 PF13429 TPR_15: Tetratricopep 99.7 4.4E-17 9.5E-22 154.7 12.5 262 327-594 13-276 (280)
49 TIGR00540 hemY_coli hemY prote 99.7 9.5E-14 2.1E-18 138.8 36.9 292 299-595 96-399 (409)
50 PRK10747 putative protoheme IX 99.7 2.2E-13 4.8E-18 135.3 37.3 285 300-595 97-390 (398)
51 KOG2047 mRNA splicing factor [ 99.7 4.5E-11 9.8E-16 115.6 50.1 510 99-622 126-715 (835)
52 KOG1129 TPR repeat-containing 99.7 1.9E-14 4E-19 127.1 20.2 235 393-633 224-461 (478)
53 KOG2047 mRNA splicing factor [ 99.7 2.7E-10 5.8E-15 110.4 49.5 493 123-630 114-687 (835)
54 KOG3785 Uncharacterized conser 99.6 1.2E-11 2.7E-16 110.8 36.7 479 120-640 31-526 (557)
55 COG2956 Predicted N-acetylgluc 99.6 2.4E-12 5.2E-17 114.0 31.5 286 230-525 48-346 (389)
56 KOG1174 Anaphase-promoting com 99.6 2.8E-11 6.2E-16 110.8 39.3 323 319-649 191-519 (564)
57 COG3071 HemY Uncharacterized e 99.6 4.1E-12 8.8E-17 116.3 34.0 287 335-630 97-390 (400)
58 KOG4162 Predicted calmodulin-b 99.6 7.9E-11 1.7E-15 116.6 45.3 420 208-633 314-786 (799)
59 KOG1156 N-terminal acetyltrans 99.6 1.3E-10 2.8E-15 112.8 43.9 162 114-281 11-172 (700)
60 KOG1156 N-terminal acetyltrans 99.6 9.7E-11 2.1E-15 113.7 42.6 96 536-632 375-470 (700)
61 COG3071 HemY Uncharacterized e 99.6 1.1E-11 2.3E-16 113.6 33.9 291 300-599 97-394 (400)
62 COG2956 Predicted N-acetylgluc 99.6 5.8E-12 1.3E-16 111.6 30.2 226 266-526 49-278 (389)
63 KOG3785 Uncharacterized conser 99.6 6.8E-11 1.5E-15 106.1 36.8 495 91-628 35-550 (557)
64 PRK12370 invasion protein regu 99.6 1.1E-12 2.4E-17 136.2 29.3 256 371-635 275-540 (553)
65 TIGR02521 type_IV_pilW type IV 99.6 1.9E-12 4E-17 120.3 28.2 202 426-630 30-232 (234)
66 KOG1174 Anaphase-promoting com 99.6 5.7E-10 1.2E-14 102.4 41.6 279 318-605 228-509 (564)
67 KOG4162 Predicted calmodulin-b 99.6 1.3E-10 2.7E-15 115.2 40.0 411 177-596 318-784 (799)
68 KOG2376 Signal recognition par 99.6 3.7E-10 8E-15 108.6 41.9 455 149-626 14-516 (652)
69 KOG1129 TPR repeat-containing 99.6 8.1E-13 1.8E-17 116.9 22.2 234 358-596 224-459 (478)
70 PRK12370 invasion protein regu 99.6 2.5E-12 5.3E-17 133.7 27.8 218 406-630 275-502 (553)
71 KOG0548 Molecular co-chaperone 99.5 4E-11 8.7E-16 114.0 30.6 229 397-639 229-464 (539)
72 PF12569 NARP1: NMDA receptor- 99.5 7.1E-10 1.5E-14 111.1 41.1 297 149-455 6-333 (517)
73 TIGR02521 type_IV_pilW type IV 99.5 2.1E-11 4.5E-16 113.2 28.0 200 392-594 31-231 (234)
74 COG3063 PilF Tfp pilus assembl 99.5 4.1E-12 8.8E-17 107.5 19.7 203 428-633 36-239 (250)
75 KOG2376 Signal recognition par 99.5 1.3E-09 2.9E-14 104.8 38.6 439 187-645 17-502 (652)
76 PF12569 NARP1: NMDA receptor- 99.5 1.9E-10 4.1E-15 115.1 33.3 131 499-630 196-334 (517)
77 KOG1840 Kinesin light chain [C 99.5 6.1E-11 1.3E-15 117.0 29.1 237 393-629 200-478 (508)
78 COG3063 PilF Tfp pilus assembl 99.5 5.7E-11 1.2E-15 100.7 24.5 199 394-595 37-236 (250)
79 KOG4318 Bicoid mRNA stability 99.5 1.3E-09 2.8E-14 109.6 36.1 101 533-633 492-597 (1088)
80 PRK11189 lipoprotein NlpI; Pro 99.5 1E-10 2.2E-15 111.1 27.8 233 371-612 40-282 (296)
81 PRK11189 lipoprotein NlpI; Pro 99.4 6.3E-11 1.4E-15 112.5 25.5 221 405-633 39-268 (296)
82 KOG0624 dsRNA-activated protei 99.4 3.1E-09 6.7E-14 95.3 31.2 318 251-596 37-371 (504)
83 KOG0548 Molecular co-chaperone 99.4 4.8E-09 1E-13 100.2 33.3 238 360-612 227-471 (539)
84 KOG1127 TPR repeat-containing 99.4 1.3E-08 2.9E-13 103.8 38.0 454 93-559 473-994 (1238)
85 KOG1840 Kinesin light chain [C 99.4 5.9E-10 1.3E-14 110.1 27.1 235 360-594 202-478 (508)
86 KOG4318 Bicoid mRNA stability 99.4 6.2E-10 1.3E-14 111.9 27.0 90 204-305 12-101 (1088)
87 KOG1127 TPR repeat-containing 99.4 2.2E-08 4.8E-13 102.3 37.8 478 125-628 472-994 (1238)
88 PRK04841 transcriptional regul 99.4 2.4E-07 5.3E-12 104.2 51.2 373 257-631 346-761 (903)
89 KOG0624 dsRNA-activated protei 99.3 3.5E-08 7.6E-13 88.7 34.2 317 224-570 45-379 (504)
90 KOG1125 TPR repeat-containing 99.3 1.1E-10 2.4E-15 112.0 18.8 220 404-631 297-528 (579)
91 cd05804 StaR_like StaR_like; a 99.3 2.4E-08 5.1E-13 99.1 35.6 304 324-632 8-338 (355)
92 PLN02789 farnesyltranstransfer 99.3 4.8E-09 1E-13 99.3 28.0 228 402-636 47-306 (320)
93 KOG4340 Uncharacterized conser 99.3 9.3E-09 2E-13 90.5 27.2 421 184-635 12-448 (459)
94 KOG4340 Uncharacterized conser 99.3 9.9E-09 2.1E-13 90.3 27.2 416 150-595 13-443 (459)
95 KOG3617 WD40 and TPR repeat-co 99.3 7.9E-07 1.7E-11 89.3 43.3 471 123-633 740-1362(1416)
96 KOG0985 Vesicle coat protein c 99.3 1E-06 2.2E-11 90.4 44.2 478 91-626 792-1337(1666)
97 KOG1125 TPR repeat-containing 99.2 2.7E-09 5.9E-14 102.7 21.7 256 364-623 292-564 (579)
98 KOG3616 Selective LIM binding 99.2 3.8E-07 8.1E-12 90.3 36.6 215 367-623 716-930 (1636)
99 KOG3617 WD40 and TPR repeat-co 99.2 8.3E-08 1.8E-12 96.0 32.3 230 155-418 736-993 (1416)
100 cd05804 StaR_like StaR_like; a 99.2 1.7E-07 3.7E-12 93.0 35.3 197 397-595 119-336 (355)
101 PRK04841 transcriptional regul 99.2 2.9E-07 6.2E-12 103.6 39.6 336 261-596 383-761 (903)
102 PLN02789 farnesyltranstransfer 99.2 7.8E-08 1.7E-12 91.1 28.7 224 364-593 44-300 (320)
103 PRK10370 formate-dependent nit 99.2 7.3E-09 1.6E-13 91.4 20.0 120 475-596 52-174 (198)
104 PF04733 Coatomer_E: Coatomer 99.1 1.8E-09 3.9E-14 100.8 16.4 252 330-596 9-266 (290)
105 PF13041 PPR_2: PPR repeat fam 99.1 1.3E-10 2.9E-15 76.5 6.1 49 250-298 1-49 (50)
106 PRK15359 type III secretion sy 99.1 3.4E-09 7.3E-14 88.4 14.8 109 500-610 27-135 (144)
107 TIGR03302 OM_YfiO outer membra 99.1 2.2E-08 4.8E-13 92.6 21.9 188 426-632 32-234 (235)
108 PF04733 Coatomer_E: Coatomer 99.1 6.4E-09 1.4E-13 97.2 18.1 151 402-563 112-267 (290)
109 KOG3616 Selective LIM binding 99.1 1.3E-06 2.7E-11 86.8 34.1 83 151-244 593-675 (1636)
110 PRK15359 type III secretion sy 99.1 9.9E-09 2.1E-13 85.6 16.9 119 518-641 14-132 (144)
111 KOG1128 Uncharacterized conser 99.1 9.9E-09 2.2E-13 101.5 19.1 217 394-630 400-616 (777)
112 PF13041 PPR_2: PPR repeat fam 99.1 4.2E-10 9.1E-15 74.2 6.6 49 355-403 1-49 (50)
113 KOG0985 Vesicle coat protein c 99.1 1.3E-05 2.7E-10 82.8 40.9 202 253-489 1105-1306(1666)
114 PRK10370 formate-dependent nit 99.1 4.7E-08 1E-12 86.2 21.0 125 509-635 51-178 (198)
115 PRK15179 Vi polysaccharide bio 99.0 7.1E-08 1.5E-12 100.8 24.5 137 458-596 82-218 (694)
116 COG5010 TadD Flp pilus assembl 99.0 8.8E-08 1.9E-12 83.6 21.0 164 426-593 66-229 (257)
117 KOG1070 rRNA processing protei 99.0 8.1E-08 1.8E-12 101.6 24.3 235 392-629 1458-1699(1710)
118 TIGR02552 LcrH_SycD type III s 99.0 7.9E-09 1.7E-13 86.1 13.9 116 519-636 5-120 (135)
119 KOG3060 Uncharacterized conser 99.0 1.8E-07 3.8E-12 80.9 21.5 189 405-596 25-221 (289)
120 KOG1914 mRNA cleavage and poly 99.0 2.9E-05 6.3E-10 74.9 38.3 428 143-595 16-501 (656)
121 COG5010 TadD Flp pilus assembl 99.0 1.1E-07 2.5E-12 83.0 20.5 162 461-626 66-227 (257)
122 KOG1128 Uncharacterized conser 99.0 1.1E-07 2.4E-12 94.4 22.7 236 321-577 397-634 (777)
123 KOG1914 mRNA cleavage and poly 99.0 3.5E-05 7.6E-10 74.4 44.6 423 179-630 17-501 (656)
124 TIGR03302 OM_YfiO outer membra 99.0 1.6E-07 3.6E-12 86.8 21.6 185 391-595 32-232 (235)
125 PRK15179 Vi polysaccharide bio 99.0 4.4E-07 9.5E-12 95.0 26.9 145 424-571 83-227 (694)
126 KOG1070 rRNA processing protei 98.9 1E-06 2.2E-11 93.7 28.4 227 415-646 1447-1682(1710)
127 KOG2053 Mitochondrial inherita 98.9 0.0001 2.2E-09 75.7 49.6 226 123-354 21-258 (932)
128 PRK14720 transcript cleavage f 98.9 3.3E-07 7.1E-12 96.6 24.4 232 356-629 30-282 (906)
129 KOG3081 Vesicle coat complex C 98.9 3E-06 6.5E-11 74.1 24.6 250 329-594 15-270 (299)
130 COG4783 Putative Zn-dependent 98.9 2.2E-06 4.8E-11 81.7 25.9 149 462-630 306-454 (484)
131 KOG3081 Vesicle coat complex C 98.9 3.9E-06 8.5E-11 73.4 24.7 254 294-564 15-274 (299)
132 KOG3060 Uncharacterized conser 98.8 4.7E-06 1E-10 72.3 23.8 199 369-571 24-230 (289)
133 TIGR02552 LcrH_SycD type III s 98.8 4.1E-07 8.8E-12 75.7 15.5 111 484-596 5-115 (135)
134 PRK14720 transcript cleavage f 98.7 6.6E-06 1.4E-10 87.1 26.6 150 394-577 118-268 (906)
135 COG4783 Putative Zn-dependent 98.7 4.4E-06 9.5E-11 79.8 20.4 131 504-636 313-443 (484)
136 PRK15363 pathogenicity island 98.7 5.4E-07 1.2E-11 73.4 12.5 98 533-631 36-133 (157)
137 PF09976 TPR_21: Tetratricopep 98.6 4.6E-06 9.9E-11 70.0 16.1 117 509-627 23-144 (145)
138 KOG0553 TPR repeat-containing 98.6 1.1E-06 2.4E-11 78.5 12.2 108 506-615 90-197 (304)
139 KOG2053 Mitochondrial inherita 98.6 0.0017 3.7E-08 67.2 48.5 223 158-387 20-256 (932)
140 TIGR02795 tol_pal_ybgF tol-pal 98.5 2.9E-06 6.3E-11 68.8 13.9 102 534-636 4-111 (119)
141 PF09295 ChAPs: ChAPs (Chs5p-A 98.5 4.4E-06 9.6E-11 80.8 16.3 120 504-628 176-295 (395)
142 KOG0550 Molecular chaperone (D 98.5 2.4E-05 5.2E-10 72.9 19.9 341 261-628 58-421 (486)
143 PLN03088 SGT1, suppressor of 98.5 1.8E-06 3.9E-11 84.2 13.3 106 502-609 7-112 (356)
144 cd00189 TPR Tetratricopeptide 98.5 2.6E-06 5.7E-11 65.9 12.0 97 535-632 3-99 (100)
145 PF09976 TPR_21: Tetratricopep 98.5 1.4E-05 3.1E-10 67.0 16.8 119 474-593 23-145 (145)
146 KOG0553 TPR repeat-containing 98.5 2.5E-06 5.3E-11 76.3 12.2 131 468-600 87-220 (304)
147 PF12854 PPR_1: PPR repeat 98.5 2.2E-07 4.7E-12 54.7 3.8 32 247-278 2-33 (34)
148 PF09295 ChAPs: ChAPs (Chs5p-A 98.5 1.1E-05 2.5E-10 78.0 17.6 121 467-592 174-294 (395)
149 KOG0550 Molecular chaperone (D 98.4 2E-05 4.4E-10 73.4 17.6 159 435-596 177-351 (486)
150 PRK15363 pathogenicity island 98.4 8.7E-06 1.9E-10 66.5 13.2 97 498-595 36-132 (157)
151 COG4235 Cytochrome c biogenesi 98.4 1.5E-05 3.2E-10 72.0 15.8 100 496-596 155-257 (287)
152 PF12854 PPR_1: PPR repeat 98.4 5.8E-07 1.3E-11 52.9 4.2 32 492-523 2-33 (34)
153 PLN03088 SGT1, suppressor of 98.4 1.4E-05 3E-10 78.1 16.1 107 467-575 7-113 (356)
154 PF12895 Apc3: Anaphase-promot 98.4 9.4E-07 2E-11 66.0 6.0 81 545-627 2-84 (84)
155 COG4700 Uncharacterized protei 98.3 0.00025 5.5E-09 58.7 19.2 131 495-627 87-219 (251)
156 TIGR02795 tol_pal_ybgF tol-pal 98.3 3.1E-05 6.6E-10 62.7 14.3 98 499-596 4-106 (119)
157 PF12895 Apc3: Anaphase-promot 98.3 1.5E-06 3.2E-11 64.9 5.6 82 510-592 2-84 (84)
158 PRK02603 photosystem I assembl 98.3 5.4E-05 1.2E-09 65.7 15.8 83 499-581 37-121 (172)
159 KOG1130 Predicted G-alpha GTPa 98.3 2E-05 4.4E-10 73.2 13.3 286 329-630 24-344 (639)
160 PRK10153 DNA-binding transcrip 98.3 8.5E-05 1.9E-09 75.7 19.1 83 549-633 401-485 (517)
161 PF13414 TPR_11: TPR repeat; P 98.3 4.8E-06 1E-10 59.5 7.4 65 566-631 3-68 (69)
162 cd00189 TPR Tetratricopeptide 98.2 2.8E-05 6E-10 60.0 12.0 95 500-595 3-97 (100)
163 PF13432 TPR_16: Tetratricopep 98.2 9.6E-06 2.1E-10 57.1 7.7 57 539-595 4-60 (65)
164 CHL00033 ycf3 photosystem I as 98.2 4.1E-05 8.9E-10 66.2 12.8 81 497-577 35-117 (168)
165 PRK02603 photosystem I assembl 98.2 5.7E-05 1.2E-09 65.6 13.7 102 532-634 35-153 (172)
166 COG4235 Cytochrome c biogenesi 98.2 0.00015 3.2E-09 65.8 16.1 117 518-636 143-262 (287)
167 PF13432 TPR_16: Tetratricopep 98.1 1.1E-05 2.5E-10 56.7 7.2 62 571-633 2-63 (65)
168 CHL00033 ycf3 photosystem I as 98.1 5.8E-05 1.3E-09 65.3 13.0 113 513-626 15-138 (168)
169 PF13414 TPR_11: TPR repeat; P 98.1 1.3E-05 2.7E-10 57.3 7.3 66 531-596 2-68 (69)
170 PRK10803 tol-pal system protei 98.1 7.7E-05 1.7E-09 68.6 14.1 93 543-636 154-252 (263)
171 PF12688 TPR_5: Tetratrico pep 98.1 0.00011 2.4E-09 58.1 12.7 90 538-628 7-102 (120)
172 PRK15331 chaperone protein Sic 98.1 0.00014 2.9E-09 59.9 13.4 86 508-594 48-133 (165)
173 PF05843 Suf: Suppressor of fo 98.1 0.00017 3.6E-09 67.9 15.4 133 499-633 3-139 (280)
174 PF12688 TPR_5: Tetratrico pep 98.0 0.00027 5.9E-09 55.9 13.9 91 503-593 7-102 (120)
175 PRK10866 outer membrane biogen 98.0 0.0019 4.2E-08 59.1 21.6 177 433-628 38-239 (243)
176 PF14559 TPR_19: Tetratricopep 98.0 1.6E-05 3.4E-10 56.7 6.4 54 543-596 2-55 (68)
177 PF14938 SNAP: Soluble NSF att 98.0 0.0013 2.8E-08 62.2 20.8 94 500-593 158-264 (282)
178 COG5107 RNA14 Pre-mRNA 3'-end 98.0 0.018 3.8E-07 55.1 38.3 84 143-229 38-121 (660)
179 PRK10153 DNA-binding transcrip 98.0 0.00085 1.8E-08 68.6 19.8 138 424-564 334-485 (517)
180 KOG1130 Predicted G-alpha GTPa 98.0 0.00013 2.8E-09 68.1 12.3 132 394-525 197-343 (639)
181 PF14938 SNAP: Soluble NSF att 97.9 0.0012 2.6E-08 62.5 18.7 26 569-594 158-183 (282)
182 COG4700 Uncharacterized protei 97.9 0.0087 1.9E-07 49.9 20.5 134 459-593 86-220 (251)
183 PRK10866 outer membrane biogen 97.9 0.0038 8.2E-08 57.2 21.0 173 401-593 41-239 (243)
184 COG3898 Uncharacterized membra 97.9 0.023 5E-07 53.3 31.5 146 477-630 244-392 (531)
185 KOG2041 WD40 repeat protein [G 97.9 0.029 6.2E-07 56.7 27.1 204 214-452 689-903 (1189)
186 PRK10803 tol-pal system protei 97.9 0.00054 1.2E-08 63.2 14.4 98 499-596 145-247 (263)
187 PRK15331 chaperone protein Sic 97.8 0.0016 3.5E-08 53.7 15.4 91 538-629 43-133 (165)
188 PF13525 YfiO: Outer membrane 97.8 0.0031 6.7E-08 56.3 18.6 51 570-621 145-198 (203)
189 COG1729 Uncharacterized protei 97.8 0.00066 1.4E-08 60.8 13.9 100 542-642 151-256 (262)
190 TIGR00756 PPR pentatricopeptid 97.8 3.7E-05 8E-10 46.0 4.4 33 254-286 2-34 (35)
191 PF13371 TPR_9: Tetratricopept 97.8 0.00013 2.9E-09 52.7 7.8 55 541-595 4-58 (73)
192 KOG2041 WD40 repeat protein [G 97.8 0.058 1.2E-06 54.6 31.8 203 144-384 689-905 (1189)
193 COG0457 NrfG FOG: TPR repeat [ 97.8 0.033 7.1E-07 51.5 31.3 203 428-632 60-267 (291)
194 PF05843 Suf: Suppressor of fo 97.8 0.00077 1.7E-08 63.5 14.1 130 149-281 3-136 (280)
195 PF13525 YfiO: Outer membrane 97.7 0.0062 1.4E-07 54.3 19.1 167 401-587 14-199 (203)
196 PF14559 TPR_19: Tetratricopep 97.7 0.00013 2.8E-09 51.8 6.6 63 508-571 2-64 (68)
197 PF13371 TPR_9: Tetratricopept 97.7 0.0003 6.4E-09 50.8 8.4 64 573-637 2-65 (73)
198 TIGR00756 PPR pentatricopeptid 97.7 8E-05 1.7E-09 44.5 4.6 33 499-531 2-34 (35)
199 PF13812 PPR_3: Pentatricopept 97.7 6.8E-05 1.5E-09 44.5 4.1 32 254-285 3-34 (34)
200 PRK11906 transcriptional regul 97.7 0.004 8.7E-08 60.5 18.0 113 512-627 319-433 (458)
201 KOG2796 Uncharacterized conser 97.7 0.033 7.1E-07 49.4 22.3 133 464-596 179-316 (366)
202 PRK11906 transcriptional regul 97.7 0.0017 3.6E-08 63.1 15.1 121 513-634 274-405 (458)
203 PF13812 PPR_3: Pentatricopept 97.6 0.00011 2.4E-09 43.5 4.5 33 498-530 2-34 (34)
204 PF10037 MRP-S27: Mitochondria 97.6 0.0011 2.4E-08 64.8 13.4 120 286-405 65-186 (429)
205 KOG2796 Uncharacterized conser 97.6 0.026 5.7E-07 50.0 20.1 148 409-564 166-318 (366)
206 KOG0543 FKBP-type peptidyl-pro 97.6 0.0017 3.6E-08 61.4 13.5 145 466-632 212-357 (397)
207 PF10037 MRP-S27: Mitochondria 97.6 0.0016 3.4E-08 63.8 13.8 122 214-335 63-186 (429)
208 COG3898 Uncharacterized membra 97.6 0.069 1.5E-06 50.3 33.1 307 126-456 68-392 (531)
209 KOG1258 mRNA processing protei 97.5 0.12 2.7E-06 51.8 39.0 186 392-580 297-489 (577)
210 PF07079 DUF1347: Protein of u 97.5 0.12 2.6E-06 49.9 45.3 61 565-627 459-521 (549)
211 PF01535 PPR: PPR repeat; Int 97.4 0.00019 4E-09 41.4 3.3 29 254-282 2-30 (31)
212 KOG1538 Uncharacterized conser 97.4 0.016 3.5E-07 57.8 18.2 37 343-382 621-657 (1081)
213 KOG4555 TPR repeat-containing 97.4 0.0037 8.1E-08 48.6 10.9 90 542-631 53-145 (175)
214 COG1729 Uncharacterized protei 97.4 0.0039 8.4E-08 56.0 12.8 102 499-602 144-250 (262)
215 KOG1941 Acetylcholine receptor 97.4 0.011 2.3E-07 54.8 15.6 227 367-593 16-273 (518)
216 PF13424 TPR_12: Tetratricopep 97.4 0.00049 1.1E-08 50.4 6.1 63 567-629 6-74 (78)
217 KOG0543 FKBP-type peptidyl-pro 97.4 0.0012 2.5E-08 62.4 9.8 76 567-643 258-333 (397)
218 PF08579 RPM2: Mitochondrial r 97.4 0.0035 7.7E-08 47.6 10.3 78 152-229 30-116 (120)
219 PF13512 TPR_18: Tetratricopep 97.4 0.015 3.3E-07 46.9 14.6 100 534-634 12-132 (142)
220 PF08579 RPM2: Mitochondrial r 97.3 0.0038 8.1E-08 47.5 10.0 43 292-334 30-73 (120)
221 COG4105 ComL DNA uptake lipopr 97.3 0.11 2.3E-06 46.6 22.1 53 538-590 173-228 (254)
222 PLN03098 LPA1 LOW PSII ACCUMUL 97.3 0.0014 3.1E-08 63.4 9.7 99 531-633 74-177 (453)
223 PLN03098 LPA1 LOW PSII ACCUMUL 97.3 0.0031 6.7E-08 61.2 11.7 67 495-561 73-141 (453)
224 PF01535 PPR: PPR repeat; Int 97.2 0.0005 1.1E-08 39.6 3.6 29 499-527 2-30 (31)
225 PF13281 DUF4071: Domain of un 97.2 0.089 1.9E-06 50.7 20.4 30 567-596 306-335 (374)
226 PF13424 TPR_12: Tetratricopep 97.2 0.0022 4.7E-08 47.0 7.8 62 533-594 6-74 (78)
227 PF13281 DUF4071: Domain of un 97.2 0.084 1.8E-06 50.8 20.2 30 604-633 308-337 (374)
228 PF03704 BTAD: Bacterial trans 97.2 0.014 3.1E-07 48.9 13.9 71 569-640 65-140 (146)
229 KOG1538 Uncharacterized conser 97.2 0.055 1.2E-06 54.3 19.2 53 429-490 749-801 (1081)
230 PF03704 BTAD: Bacterial trans 97.2 0.011 2.4E-07 49.6 12.8 110 497-606 3-141 (146)
231 COG4105 ComL DNA uptake lipopr 97.1 0.18 3.9E-06 45.2 20.8 63 570-634 171-236 (254)
232 COG5107 RNA14 Pre-mRNA 3'-end 97.1 0.29 6.2E-06 47.3 39.6 132 461-595 396-531 (660)
233 KOG4234 TPR repeat-containing 97.1 0.0076 1.7E-07 50.9 10.6 93 504-596 102-198 (271)
234 PF09205 DUF1955: Domain of un 97.1 0.078 1.7E-06 41.6 14.8 61 572-633 92-152 (161)
235 PF07079 DUF1347: Protein of u 97.1 0.33 7.1E-06 47.0 47.5 452 123-606 18-530 (549)
236 KOG2280 Vacuolar assembly/sort 97.0 0.53 1.2E-05 48.6 28.1 362 193-590 400-794 (829)
237 KOG1941 Acetylcholine receptor 97.0 0.042 9E-07 51.1 15.1 229 332-560 16-274 (518)
238 COG0457 NrfG FOG: TPR repeat [ 97.0 0.29 6.3E-06 45.0 33.2 225 371-596 37-266 (291)
239 PF06239 ECSIT: Evolutionarily 97.0 0.026 5.7E-07 48.9 12.8 71 476-546 66-152 (228)
240 KOG1258 mRNA processing protei 97.0 0.52 1.1E-05 47.5 37.0 383 143-546 75-489 (577)
241 PF13428 TPR_14: Tetratricopep 96.9 0.0025 5.4E-08 40.2 5.1 39 568-607 3-41 (44)
242 COG3118 Thioredoxin domain-con 96.9 0.16 3.4E-06 46.4 18.0 52 437-489 144-195 (304)
243 PF06239 ECSIT: Evolutionarily 96.9 0.017 3.8E-07 50.0 11.4 104 390-512 45-153 (228)
244 PF10300 DUF3808: Protein of u 96.9 0.082 1.8E-06 53.9 18.4 160 468-630 194-376 (468)
245 KOG2610 Uncharacterized conser 96.9 0.17 3.6E-06 46.8 18.0 162 148-312 104-272 (491)
246 KOG2280 Vacuolar assembly/sort 96.9 0.67 1.5E-05 47.9 32.2 341 176-557 426-795 (829)
247 COG3118 Thioredoxin domain-con 96.9 0.15 3.2E-06 46.6 17.3 51 402-453 144-194 (304)
248 PF04184 ST7: ST7 protein; In 96.9 0.11 2.4E-06 50.9 17.4 102 532-633 259-378 (539)
249 COG2976 Uncharacterized protei 96.8 0.097 2.1E-06 44.5 14.8 118 515-634 70-192 (207)
250 KOG4648 Uncharacterized conser 96.8 0.0043 9.3E-08 56.8 7.5 90 505-595 105-194 (536)
251 PF13428 TPR_14: Tetratricopep 96.8 0.0032 6.9E-08 39.7 4.7 42 533-574 2-43 (44)
252 KOG2114 Vacuolar assembly/sort 96.8 0.87 1.9E-05 47.8 28.1 175 151-348 338-516 (933)
253 KOG4555 TPR repeat-containing 96.8 0.031 6.8E-07 43.6 10.7 90 506-596 52-145 (175)
254 KOG2610 Uncharacterized conser 96.8 0.12 2.6E-06 47.7 15.9 154 438-593 114-274 (491)
255 KOG1585 Protein required for f 96.7 0.37 8E-06 42.6 20.6 204 395-625 34-251 (308)
256 KOG2114 Vacuolar assembly/sort 96.7 1 2.2E-05 47.4 24.5 179 185-384 337-517 (933)
257 PF10345 Cohesin_load: Cohesin 96.7 1.1 2.5E-05 47.8 40.1 187 128-315 38-253 (608)
258 PF08631 SPO22: Meiosis protei 96.7 0.6 1.3E-05 44.1 26.3 103 428-532 85-192 (278)
259 COG4649 Uncharacterized protei 96.6 0.13 2.8E-06 42.6 13.8 122 473-594 69-195 (221)
260 PF10300 DUF3808: Protein of u 96.5 0.23 4.9E-06 50.7 18.4 26 395-420 191-216 (468)
261 PF09205 DUF1955: Domain of un 96.5 0.29 6.3E-06 38.6 16.5 136 438-597 13-151 (161)
262 PF13512 TPR_18: Tetratricopep 96.5 0.082 1.8E-06 42.8 11.7 84 146-229 9-94 (142)
263 PF02259 FAT: FAT domain; Int 96.4 1.1 2.4E-05 44.2 24.5 66 460-525 144-212 (352)
264 PF13431 TPR_17: Tetratricopep 96.3 0.0043 9.3E-08 36.4 2.7 30 556-585 3-32 (34)
265 PF02259 FAT: FAT domain; Int 96.3 1.3 2.8E-05 43.7 21.9 55 363-421 4-58 (352)
266 PF04184 ST7: ST7 protein; In 96.2 0.61 1.3E-05 46.0 17.9 57 433-489 265-322 (539)
267 COG4785 NlpI Lipoprotein NlpI, 96.2 0.72 1.6E-05 40.0 17.8 181 405-596 78-267 (297)
268 PF04840 Vps16_C: Vps16, C-ter 96.2 1.2 2.7E-05 42.6 28.7 105 362-486 182-286 (319)
269 KOG4234 TPR repeat-containing 96.2 0.25 5.5E-06 42.1 13.3 91 542-633 105-200 (271)
270 COG4785 NlpI Lipoprotein NlpI, 96.2 0.33 7.2E-06 42.0 14.1 182 437-631 75-267 (297)
271 PF13431 TPR_17: Tetratricopep 96.2 0.0064 1.4E-07 35.6 3.0 33 589-622 2-34 (34)
272 KOG1586 Protein required for f 96.2 0.81 1.8E-05 40.3 18.0 124 472-595 83-224 (288)
273 PF09613 HrpB1_HrpK: Bacterial 96.0 0.28 6.2E-06 40.6 12.7 119 498-621 8-129 (160)
274 PF08631 SPO22: Meiosis protei 96.0 1.5 3.2E-05 41.5 27.2 131 364-497 42-192 (278)
275 COG4649 Uncharacterized protei 95.9 0.81 1.7E-05 38.2 15.3 139 146-285 58-200 (221)
276 KOG1550 Extracellular protein 95.9 2.8 6.1E-05 44.1 28.2 46 548-595 455-504 (552)
277 PF04840 Vps16_C: Vps16, C-ter 95.9 1.8 3.9E-05 41.5 31.1 109 394-522 179-287 (319)
278 KOG1550 Extracellular protein 95.8 0.92 2E-05 47.6 18.9 143 408-562 228-394 (552)
279 KOG2471 TPR repeat-containing 95.8 0.89 1.9E-05 44.6 16.6 109 470-578 248-381 (696)
280 KOG1920 IkappaB kinase complex 95.8 3.9 8.4E-05 45.1 22.9 273 271-592 776-1052(1265)
281 PF04053 Coatomer_WDAD: Coatom 95.7 0.14 3E-06 51.4 11.7 155 123-312 273-427 (443)
282 PF04053 Coatomer_WDAD: Coatom 95.6 0.48 1E-05 47.7 15.3 27 357-383 347-373 (443)
283 KOG1920 IkappaB kinase complex 95.6 4.7 0.0001 44.5 25.6 138 467-625 913-1050(1265)
284 KOG0890 Protein kinase of the 95.6 7.4 0.00016 46.6 26.6 322 257-596 1388-1732(2382)
285 smart00299 CLH Clathrin heavy 95.4 1.3 2.9E-05 36.6 15.3 123 468-612 13-136 (140)
286 PF10345 Cohesin_load: Cohesin 95.4 4.9 0.00011 43.0 29.7 68 572-639 367-450 (608)
287 COG1747 Uncharacterized N-term 95.3 3.3 7.2E-05 41.1 26.4 179 391-576 65-249 (711)
288 PF06552 TOM20_plant: Plant sp 95.3 0.19 4E-06 42.4 9.2 77 548-632 51-138 (186)
289 PF08424 NRDE-2: NRDE-2, neces 95.1 2.8 6E-05 40.6 18.3 119 514-633 48-186 (321)
290 COG0790 FOG: TPR repeat, SEL1 95.1 3.3 7.1E-05 39.6 23.6 81 550-636 173-272 (292)
291 PF12921 ATP13: Mitochondrial 95.1 0.42 9.1E-06 38.4 10.5 48 528-575 48-97 (126)
292 PF06552 TOM20_plant: Plant sp 95.0 0.17 3.8E-06 42.5 8.3 86 548-634 7-113 (186)
293 PF07719 TPR_2: Tetratricopept 95.0 0.071 1.5E-06 31.1 4.7 28 568-595 3-30 (34)
294 PF07719 TPR_2: Tetratricopept 95.0 0.066 1.4E-06 31.2 4.5 32 602-633 2-33 (34)
295 PRK15180 Vi polysaccharide bio 95.0 0.65 1.4E-05 45.3 13.1 87 473-561 334-420 (831)
296 PF13176 TPR_7: Tetratricopept 95.0 0.06 1.3E-06 32.0 4.2 28 603-630 1-28 (36)
297 PF00515 TPR_1: Tetratricopept 94.9 0.075 1.6E-06 31.0 4.5 28 568-595 3-30 (34)
298 PF12921 ATP13: Mitochondrial 94.8 0.77 1.7E-05 36.9 11.4 78 359-436 4-97 (126)
299 KOG4648 Uncharacterized conser 94.7 0.2 4.3E-06 46.4 8.4 101 466-568 101-201 (536)
300 COG3629 DnrI DNA-binding trans 94.7 0.43 9.4E-06 44.0 10.7 78 533-610 154-236 (280)
301 COG2909 MalT ATP-dependent tra 94.6 7.6 0.00017 41.7 30.9 259 332-593 425-724 (894)
302 PF13176 TPR_7: Tetratricopept 94.6 0.082 1.8E-06 31.4 4.2 27 568-594 1-27 (36)
303 KOG1585 Protein required for f 94.6 3.1 6.7E-05 37.1 18.8 208 146-380 30-250 (308)
304 TIGR02561 HrpB1_HrpK type III 94.6 0.92 2E-05 37.0 11.0 83 499-582 9-94 (153)
305 smart00299 CLH Clathrin heavy 94.4 2.5 5.4E-05 35.0 15.7 40 329-369 14-53 (140)
306 COG3629 DnrI DNA-binding trans 94.3 0.6 1.3E-05 43.1 10.8 78 148-226 154-236 (280)
307 PF04097 Nic96: Nup93/Nic96; 94.2 6.8 0.00015 41.8 19.9 43 257-300 116-158 (613)
308 PF00515 TPR_1: Tetratricopept 94.2 0.11 2.4E-06 30.3 4.0 31 602-632 2-32 (34)
309 PF09613 HrpB1_HrpK: Bacterial 94.0 3.1 6.7E-05 34.7 15.6 53 473-526 21-73 (160)
310 PF13170 DUF4003: Protein of u 93.9 6 0.00013 37.5 19.1 130 374-505 79-225 (297)
311 PRK15180 Vi polysaccharide bio 93.9 7.2 0.00016 38.4 29.6 88 192-281 333-420 (831)
312 KOG2396 HAT (Half-A-TPR) repea 93.5 8.8 0.00019 38.3 41.3 99 530-629 457-558 (568)
313 COG0790 FOG: TPR repeat, SEL1 93.5 7.3 0.00016 37.2 25.4 145 443-596 93-267 (292)
314 KOG1308 Hsp70-interacting prot 93.2 0.058 1.3E-06 50.0 2.4 124 507-633 124-247 (377)
315 KOG0545 Aryl-hydrocarbon recep 93.2 1.4 2.9E-05 39.2 10.3 65 568-633 232-296 (329)
316 PF10602 RPN7: 26S proteasome 93.1 2 4.2E-05 37.2 11.4 95 534-628 38-140 (177)
317 PF13170 DUF4003: Protein of u 92.8 9 0.0002 36.4 20.3 120 443-564 78-214 (297)
318 KOG3364 Membrane protein invol 92.8 2 4.4E-05 34.2 9.7 68 529-596 29-101 (149)
319 COG2976 Uncharacterized protei 92.7 6 0.00013 34.1 15.5 92 504-596 96-189 (207)
320 PF10602 RPN7: 26S proteasome 92.7 1.7 3.7E-05 37.6 10.5 63 148-210 37-101 (177)
321 COG2909 MalT ATP-dependent tra 92.6 17 0.00037 39.2 29.2 222 193-417 426-684 (894)
322 PF13174 TPR_6: Tetratricopept 92.5 0.25 5.5E-06 28.4 3.8 25 606-630 5-29 (33)
323 KOG4507 Uncharacterized conser 92.5 0.44 9.6E-06 47.6 7.3 98 509-607 619-716 (886)
324 COG1747 Uncharacterized N-term 92.5 13 0.00027 37.3 26.3 179 355-541 64-248 (711)
325 COG4455 ImpE Protein of avirul 92.4 1.3 2.8E-05 38.6 9.0 130 501-637 5-141 (273)
326 KOG2471 TPR repeat-containing 92.2 6.8 0.00015 38.8 14.5 307 295-614 25-382 (696)
327 COG3947 Response regulator con 92.2 9.4 0.0002 35.2 16.9 74 568-642 281-359 (361)
328 KOG4642 Chaperone-dependent E3 92.2 0.54 1.2E-05 41.5 6.6 118 506-625 19-141 (284)
329 KOG3941 Intermediate in Toll s 92.2 1.7 3.7E-05 39.5 9.8 84 426-509 66-170 (406)
330 TIGR02561 HrpB1_HrpK type III 92.1 5.8 0.00013 32.5 13.5 52 474-527 22-74 (153)
331 PRK11619 lytic murein transgly 91.8 21 0.00045 38.3 40.8 208 370-592 254-465 (644)
332 PF07035 Mic1: Colon cancer-as 91.8 7.3 0.00016 33.0 15.7 134 273-420 15-148 (167)
333 KOG2066 Vacuolar assembly/sort 91.8 20 0.00043 38.0 30.9 102 189-299 363-467 (846)
334 KOG3941 Intermediate in Toll s 91.6 1.9 4E-05 39.2 9.4 33 340-372 141-173 (406)
335 PF08424 NRDE-2: NRDE-2, neces 91.4 14 0.00031 35.7 17.3 115 481-597 50-185 (321)
336 PF13181 TPR_8: Tetratricopept 91.4 0.41 8.9E-06 27.8 3.8 26 604-629 4-29 (34)
337 KOG3364 Membrane protein invol 91.2 4.8 0.0001 32.2 10.2 73 494-566 29-105 (149)
338 KOG0530 Protein farnesyltransf 91.0 12 0.00026 34.0 14.0 131 513-645 94-231 (318)
339 KOG4507 Uncharacterized conser 90.8 1.4 3E-05 44.3 8.7 139 495-635 569-710 (886)
340 KOG4642 Chaperone-dependent E3 90.7 4.8 0.0001 35.8 10.8 118 471-592 19-143 (284)
341 KOG0276 Vesicle coat complex C 90.6 3.4 7.5E-05 41.9 11.1 150 369-558 598-747 (794)
342 PF07035 Mic1: Colon cancer-as 90.5 10 0.00022 32.2 15.5 135 483-630 15-149 (167)
343 PF13181 TPR_8: Tetratricopept 90.4 0.81 1.7E-05 26.5 4.4 30 567-596 2-31 (34)
344 PF13174 TPR_6: Tetratricopept 90.4 0.61 1.3E-05 26.7 3.9 28 568-595 2-29 (33)
345 KOG1924 RhoA GTPase effector D 90.4 0.71 1.5E-05 47.8 6.5 18 321-338 837-854 (1102)
346 PF11207 DUF2989: Protein of u 90.4 10 0.00023 33.0 12.5 76 544-621 119-198 (203)
347 PF13374 TPR_10: Tetratricopep 90.4 0.76 1.6E-05 28.1 4.5 28 602-629 3-30 (42)
348 PRK09687 putative lyase; Provi 90.0 17 0.00037 34.3 29.4 136 461-611 141-277 (280)
349 PF04910 Tcf25: Transcriptiona 90.0 21 0.00045 35.2 19.8 92 468-561 109-222 (360)
350 KOG0376 Serine-threonine phosp 89.9 0.39 8.4E-06 47.1 4.1 102 504-609 11-113 (476)
351 PF09986 DUF2225: Uncharacteri 89.8 4.7 0.0001 36.1 10.6 41 507-547 87-133 (214)
352 PF13374 TPR_10: Tetratricopep 89.7 0.88 1.9E-05 27.8 4.5 29 567-595 3-31 (42)
353 TIGR03504 FimV_Cterm FimV C-te 89.7 0.67 1.4E-05 28.9 3.6 27 606-632 4-30 (44)
354 PF09986 DUF2225: Uncharacteri 89.6 9.2 0.0002 34.3 12.3 30 603-632 167-196 (214)
355 COG5159 RPN6 26S proteasome re 88.8 9.1 0.0002 35.0 11.3 34 467-500 8-41 (421)
356 PRK12798 chemotaxis protein; R 88.7 26 0.00056 34.5 18.5 192 439-633 124-327 (421)
357 KOG0403 Neoplastic transformat 88.6 26 0.00057 34.5 29.1 48 83-130 55-102 (645)
358 COG5159 RPN6 26S proteasome re 88.6 20 0.00043 33.0 22.2 32 258-289 9-40 (421)
359 KOG1464 COP9 signalosome, subu 88.5 19 0.00041 32.8 16.6 156 405-560 40-219 (440)
360 KOG1308 Hsp70-interacting prot 88.1 0.69 1.5E-05 43.2 4.2 91 472-564 124-214 (377)
361 PF14561 TPR_20: Tetratricopep 88.0 7.4 0.00016 29.1 9.0 62 555-616 11-73 (90)
362 KOG2062 26S proteasome regulat 87.8 40 0.00088 35.7 32.3 55 571-628 506-564 (929)
363 KOG0376 Serine-threonine phosp 87.0 1.5 3.4E-05 43.1 6.0 103 468-573 10-113 (476)
364 KOG0890 Protein kinase of the 87.0 84 0.0018 38.5 36.1 318 292-633 1388-1734(2382)
365 PF11207 DUF2989: Protein of u 86.9 10 0.00022 33.1 10.2 71 514-585 123-197 (203)
366 PRK10941 hypothetical protein; 86.9 5 0.00011 37.3 9.1 59 537-595 186-244 (269)
367 smart00028 TPR Tetratricopepti 86.7 1.4 3E-05 24.5 3.8 26 604-629 4-29 (34)
368 PRK11619 lytic murein transgly 86.7 50 0.0011 35.6 39.5 206 405-626 254-464 (644)
369 PF07721 TPR_4: Tetratricopept 86.5 1.1 2.5E-05 24.1 2.9 15 573-587 8-22 (26)
370 KOG0991 Replication factor C, 86.3 24 0.00051 31.6 12.1 80 519-601 181-273 (333)
371 PF14561 TPR_20: Tetratricopep 86.3 9.4 0.0002 28.5 8.7 62 521-583 12-75 (90)
372 PF14853 Fis1_TPR_C: Fis1 C-te 86.2 2.2 4.7E-05 28.0 4.6 28 569-596 4-31 (53)
373 PF07721 TPR_4: Tetratricopept 85.9 1.3 2.9E-05 23.8 3.0 24 603-626 3-26 (26)
374 KOG2063 Vacuolar assembly/sort 85.8 61 0.0013 35.8 19.7 40 295-334 599-638 (877)
375 COG3947 Response regulator con 85.5 31 0.00067 32.0 15.0 61 534-594 281-341 (361)
376 cd00923 Cyt_c_Oxidase_Va Cytoc 85.3 7.1 0.00015 29.2 7.2 46 515-560 25-70 (103)
377 KOG4570 Uncharacterized conser 84.8 15 0.00033 34.3 10.7 98 426-525 63-163 (418)
378 KOG0551 Hsp90 co-chaperone CNS 84.4 8.5 0.00018 36.2 9.0 99 497-595 81-182 (390)
379 PRK09687 putative lyase; Provi 84.4 37 0.00081 32.0 27.4 23 432-455 240-262 (280)
380 COG4455 ImpE Protein of avirul 84.2 8.3 0.00018 33.9 8.3 75 536-610 5-81 (273)
381 KOG0276 Vesicle coat complex C 84.1 21 0.00045 36.7 12.1 150 334-523 598-747 (794)
382 smart00028 TPR Tetratricopepti 83.7 2.4 5.2E-05 23.4 3.9 28 568-595 3-30 (34)
383 cd00923 Cyt_c_Oxidase_Va Cytoc 83.0 12 0.00025 28.1 7.5 60 165-225 25-84 (103)
384 KOG0687 26S proteasome regulat 82.8 44 0.00094 31.6 13.2 133 493-629 66-209 (393)
385 KOG0551 Hsp90 co-chaperone CNS 82.7 12 0.00026 35.2 9.3 98 463-561 82-182 (390)
386 PF02284 COX5A: Cytochrome c o 82.7 19 0.00041 27.4 9.3 76 149-225 10-87 (108)
387 KOG1586 Protein required for f 82.6 36 0.00078 30.5 21.0 57 508-564 165-227 (288)
388 PF07163 Pex26: Pex26 protein; 82.3 21 0.00046 32.8 10.5 87 399-485 90-181 (309)
389 COG5191 Uncharacterized conser 82.2 2.6 5.6E-05 38.9 4.9 78 531-609 106-184 (435)
390 KOG0292 Vesicle coat complex C 82.2 81 0.0018 34.3 22.5 97 543-639 1002-1122(1202)
391 PRK10941 hypothetical protein; 82.1 13 0.00027 34.7 9.5 61 572-633 187-247 (269)
392 TIGR02508 type_III_yscG type I 81.6 20 0.00044 27.0 8.5 80 124-212 18-98 (115)
393 PF07163 Pex26: Pex26 protein; 80.9 25 0.00054 32.4 10.4 87 503-589 89-181 (309)
394 PF10579 Rapsyn_N: Rapsyn N-te 80.4 11 0.00024 27.0 6.4 48 578-625 18-67 (80)
395 PF14853 Fis1_TPR_C: Fis1 C-te 80.4 5.9 0.00013 26.0 4.8 32 536-567 5-36 (53)
396 PF04910 Tcf25: Transcriptiona 79.7 66 0.0014 31.7 17.6 159 459-630 37-222 (360)
397 PF10579 Rapsyn_N: Rapsyn N-te 79.7 9.6 0.00021 27.3 5.9 46 544-589 18-66 (80)
398 KOG4570 Uncharacterized conser 79.3 28 0.00061 32.6 10.3 50 407-456 115-164 (418)
399 TIGR03504 FimV_Cterm FimV C-te 78.9 4.9 0.00011 25.1 3.9 26 152-177 4-29 (44)
400 KOG3824 Huntingtin interacting 78.8 6.8 0.00015 36.2 6.3 62 542-604 126-187 (472)
401 KOG1464 COP9 signalosome, subu 78.2 55 0.0012 30.0 18.6 190 334-523 39-257 (440)
402 PF04097 Nic96: Nup93/Nic96; 77.3 1.1E+02 0.0024 32.9 22.2 60 152-212 116-182 (613)
403 PF12862 Apc5: Anaphase-promot 77.2 11 0.00024 28.5 6.3 26 605-630 45-70 (94)
404 PF13929 mRNA_stabil: mRNA sta 76.4 20 0.00044 33.3 8.7 121 107-227 160-288 (292)
405 COG4976 Predicted methyltransf 76.3 5.2 0.00011 35.4 4.7 56 508-564 6-61 (287)
406 PF12862 Apc5: Anaphase-promot 75.8 15 0.00032 27.8 6.7 26 570-595 45-70 (94)
407 KOG0530 Protein farnesyltransf 75.3 67 0.0014 29.5 19.8 203 404-611 55-269 (318)
408 PF02284 COX5A: Cytochrome c o 75.1 34 0.00074 26.0 9.3 47 515-561 28-74 (108)
409 PF08311 Mad3_BUB1_I: Mad3/BUB 74.8 31 0.00068 27.8 8.7 43 550-592 81-125 (126)
410 KOG2391 Vacuolar sorting prote 74.8 79 0.0017 30.0 13.2 29 184-212 301-329 (365)
411 PF11846 DUF3366: Domain of un 74.5 16 0.00036 32.1 7.8 52 124-175 121-172 (193)
412 COG5187 RPN7 26S proteasome re 74.5 52 0.0011 30.5 10.5 114 531-645 114-237 (412)
413 TIGR02508 type_III_yscG type I 74.2 36 0.00078 25.8 8.6 52 190-247 47-98 (115)
414 COG4976 Predicted methyltransf 73.2 6.7 0.00015 34.7 4.6 60 541-601 4-63 (287)
415 PRK13184 pknD serine/threonine 72.8 1.7E+02 0.0037 33.1 26.4 326 258-594 481-868 (932)
416 PF10255 Paf67: RNA polymerase 72.8 26 0.00057 34.7 9.1 59 501-559 126-191 (404)
417 cd08819 CARD_MDA5_2 Caspase ac 72.4 30 0.00064 25.5 6.9 66 551-621 21-86 (88)
418 PF04190 DUF410: Protein of un 72.0 86 0.0019 29.2 17.5 21 610-630 150-170 (260)
419 KOG3824 Huntingtin interacting 72.0 14 0.00031 34.2 6.5 63 507-570 126-188 (472)
420 PF13934 ELYS: Nuclear pore co 71.3 20 0.00043 32.5 7.5 119 96-228 64-183 (226)
421 KOG4814 Uncharacterized conser 71.2 62 0.0013 33.8 11.2 60 569-629 397-456 (872)
422 PF00637 Clathrin: Region in C 70.7 1.6 3.5E-05 36.3 0.4 46 124-170 20-65 (143)
423 PF09670 Cas_Cas02710: CRISPR- 70.7 1.2E+02 0.0026 30.3 13.4 57 469-526 138-198 (379)
424 PF13929 mRNA_stabil: mRNA sta 70.6 94 0.002 29.1 13.6 59 460-518 200-259 (292)
425 PF00637 Clathrin: Region in C 70.1 1.6 3.5E-05 36.2 0.3 52 330-381 15-66 (143)
426 KOG2396 HAT (Half-A-TPR) repea 69.5 1.3E+02 0.0029 30.5 38.3 429 127-595 87-559 (568)
427 KOG0128 RNA-binding protein SA 69.1 1.8E+02 0.0038 31.7 35.3 227 393-627 313-560 (881)
428 smart00386 HAT HAT (Half-A-TPR 69.0 12 0.00026 20.8 3.9 26 581-607 2-27 (33)
429 KOG2062 26S proteasome regulat 68.8 1.7E+02 0.0037 31.4 35.7 121 506-629 510-634 (929)
430 KOG2908 26S proteasome regulat 68.1 67 0.0015 30.6 10.0 22 189-210 122-143 (380)
431 KOG4077 Cytochrome c oxidase, 67.2 50 0.0011 26.3 7.6 46 516-561 68-113 (149)
432 PF04190 DUF410: Protein of un 66.9 1.1E+02 0.0024 28.5 19.2 19 542-560 151-169 (260)
433 KOG0128 RNA-binding protein SA 64.8 2.2E+02 0.0047 31.1 39.4 406 146-587 112-555 (881)
434 KOG2422 Uncharacterized conser 64.1 1.9E+02 0.004 30.1 16.8 50 473-522 353-403 (665)
435 KOG2581 26S proteasome regulat 63.8 1.6E+02 0.0034 29.1 15.7 35 608-642 344-378 (493)
436 PF07575 Nucleopor_Nup85: Nup8 62.8 2.2E+02 0.0047 30.4 19.0 26 147-173 149-174 (566)
437 PF08311 Mad3_BUB1_I: Mad3/BUB 62.5 81 0.0018 25.4 9.3 43 165-207 81-124 (126)
438 COG5191 Uncharacterized conser 62.5 24 0.00051 33.0 6.0 80 494-574 104-184 (435)
439 PF07720 TPR_3: Tetratricopept 62.3 30 0.00066 20.5 4.5 20 604-623 4-23 (36)
440 PF04781 DUF627: Protein of un 62.1 74 0.0016 24.8 9.2 39 555-593 67-105 (111)
441 PF10255 Paf67: RNA polymerase 62.0 1.1E+02 0.0024 30.5 11.0 94 501-594 79-192 (404)
442 PF09670 Cas_Cas02710: CRISPR- 62.0 1.8E+02 0.0038 29.1 13.2 57 434-491 138-198 (379)
443 KOG4279 Serine/threonine prote 60.2 2.5E+02 0.0054 30.3 16.3 44 541-596 353-396 (1226)
444 PF15297 CKAP2_C: Cytoskeleton 60.1 1.1E+02 0.0023 29.6 9.9 64 549-612 120-186 (353)
445 KOG3807 Predicted membrane pro 59.1 1.7E+02 0.0036 27.9 14.7 52 506-557 284-336 (556)
446 KOG1923 Rac1 GTPase effector F 58.8 37 0.00081 36.0 7.4 11 162-172 402-412 (830)
447 PRK14956 DNA polymerase III su 58.7 2E+02 0.0043 29.6 12.3 32 565-596 247-278 (484)
448 PF07575 Nucleopor_Nup85: Nup8 58.4 2.6E+02 0.0056 29.9 17.2 23 182-205 149-171 (566)
449 PF14689 SPOB_a: Sensor_kinase 57.6 34 0.00074 23.3 4.9 22 503-524 29-50 (62)
450 PRK09857 putative transposase; 57.5 1.3E+02 0.0028 28.7 10.4 31 604-634 243-273 (292)
451 PF10516 SHNi-TPR: SHNi-TPR; 57.3 26 0.00056 21.1 3.7 27 568-594 3-29 (38)
452 PF13934 ELYS: Nuclear pore co 56.6 1.6E+02 0.0034 26.8 14.1 121 500-633 79-201 (226)
453 KOG0991 Replication factor C, 56.6 1.5E+02 0.0033 26.7 16.3 70 508-578 203-284 (333)
454 COG5187 RPN7 26S proteasome re 56.5 1.7E+02 0.0037 27.3 13.8 97 322-420 115-220 (412)
455 KOG4077 Cytochrome c oxidase, 56.3 96 0.0021 24.8 7.4 59 165-224 67-125 (149)
456 PF09477 Type_III_YscG: Bacter 56.2 92 0.002 24.1 9.9 79 124-211 19-98 (116)
457 cd08819 CARD_MDA5_2 Caspase ac 56.1 80 0.0017 23.3 7.2 66 516-586 21-86 (88)
458 PF11846 DUF3366: Domain of un 56.0 40 0.00087 29.7 6.5 35 598-632 141-175 (193)
459 smart00777 Mad3_BUB1_I Mad3/BU 56.0 1.1E+02 0.0023 24.7 9.7 41 550-590 81-123 (125)
460 KOG4279 Serine/threonine prote 55.8 3E+02 0.0064 29.8 15.5 176 428-632 202-397 (1226)
461 PF00244 14-3-3: 14-3-3 protei 55.3 1.7E+02 0.0037 26.8 11.3 40 363-402 7-46 (236)
462 KOG2066 Vacuolar assembly/sort 55.2 3.1E+02 0.0067 29.8 33.4 102 154-264 363-467 (846)
463 PF12968 DUF3856: Domain of Un 54.3 1.1E+02 0.0023 24.3 9.3 97 532-629 7-128 (144)
464 KOG1839 Uncharacterized protei 53.7 2.6E+02 0.0057 32.3 13.1 157 435-591 940-1124(1236)
465 COG4941 Predicted RNA polymera 53.6 2.1E+02 0.0046 27.5 12.6 117 476-595 270-394 (415)
466 KOG2422 Uncharacterized conser 53.3 2.9E+02 0.0062 28.9 16.2 90 505-594 350-447 (665)
467 PF14689 SPOB_a: Sensor_kinase 53.0 50 0.0011 22.5 5.1 23 362-384 28-50 (62)
468 PF04781 DUF627: Protein of un 52.6 1.1E+02 0.0024 23.9 8.6 20 506-525 5-24 (111)
469 TIGR02710 CRISPR-associated pr 52.3 2.5E+02 0.0054 27.9 11.6 53 435-487 138-196 (380)
470 PF11817 Foie-gras_1: Foie gra 51.8 83 0.0018 29.1 8.1 23 537-559 183-205 (247)
471 KOG1839 Uncharacterized protei 51.0 3E+02 0.0065 31.9 13.0 158 469-626 939-1124(1236)
472 cd02680 MIT_calpain7_2 MIT: do 50.8 32 0.00069 24.6 3.9 33 548-595 3-35 (75)
473 PF00244 14-3-3: 14-3-3 protei 50.8 2E+02 0.0043 26.3 14.8 19 612-630 180-198 (236)
474 PF14669 Asp_Glu_race_2: Putat 49.1 1.8E+02 0.0039 25.4 14.0 25 502-526 137-161 (233)
475 PF10516 SHNi-TPR: SHNi-TPR; 48.4 46 0.001 20.0 3.8 29 602-630 2-30 (38)
476 KOG2300 Uncharacterized conser 47.4 3.3E+02 0.0071 27.8 42.1 157 439-595 335-514 (629)
477 PF11817 Foie-gras_1: Foie gra 47.4 1.5E+02 0.0033 27.3 9.1 63 566-628 178-245 (247)
478 PRK09857 putative transposase; 47.2 2.2E+02 0.0048 27.1 10.2 65 535-599 209-273 (292)
479 COG2912 Uncharacterized conser 47.0 95 0.0021 28.8 7.3 55 541-595 190-244 (269)
480 KOG0545 Aryl-hydrocarbon recep 46.1 2.4E+02 0.0051 25.8 15.5 63 534-596 232-294 (329)
481 PRK08691 DNA polymerase III su 45.5 2.7E+02 0.0059 30.2 11.3 95 547-644 179-288 (709)
482 cd00280 TRFH Telomeric Repeat 45.3 1.5E+02 0.0033 25.6 7.6 67 268-337 85-158 (200)
483 KOG0687 26S proteasome regulat 45.0 2.9E+02 0.0063 26.5 15.7 39 185-223 107-149 (393)
484 COG0735 Fur Fe2+/Zn2+ uptake r 44.8 1.2E+02 0.0027 25.1 7.3 63 273-336 7-69 (145)
485 PF09477 Type_III_YscG: Bacter 44.0 1.5E+02 0.0033 23.0 10.6 82 509-596 18-99 (116)
486 KOG2391 Vacuolar sorting prote 43.7 3E+02 0.0066 26.4 12.0 46 148-194 300-345 (365)
487 PHA02537 M terminase endonucle 43.3 1.9E+02 0.0042 26.2 8.6 26 433-458 89-114 (230)
488 KOG0686 COP9 signalosome, subu 42.9 3.5E+02 0.0076 26.9 15.8 180 287-470 150-352 (466)
489 PRK12798 chemotaxis protein; R 42.3 3.7E+02 0.0079 26.9 23.9 50 335-384 125-175 (421)
490 PRK14951 DNA polymerase III su 41.5 4.2E+02 0.0091 28.5 12.1 109 512-644 184-293 (618)
491 cd02683 MIT_1 MIT: domain cont 40.7 67 0.0015 23.1 4.4 19 576-594 16-34 (77)
492 KOG2659 LisH motif-containing 40.6 2.8E+02 0.006 25.1 12.1 101 459-559 23-130 (228)
493 COG5108 RPO41 Mitochondrial DN 40.5 1.9E+02 0.0042 30.5 8.9 76 186-264 32-115 (1117)
494 cd02680 MIT_calpain7_2 MIT: do 40.3 69 0.0015 22.9 4.3 20 542-561 16-35 (75)
495 PRK10564 maltose regulon perip 39.9 62 0.0013 30.4 5.1 28 467-494 262-289 (303)
496 PRK14958 DNA polymerase III su 39.3 4.8E+02 0.01 27.4 12.3 109 512-644 179-288 (509)
497 KOG2908 26S proteasome regulat 38.9 3.7E+02 0.008 26.0 10.3 53 508-560 86-143 (380)
498 KOG2168 Cullins [Cell cycle co 38.3 5.9E+02 0.013 28.2 21.4 470 152-648 330-834 (835)
499 KOG0686 COP9 signalosome, subu 38.1 4.2E+02 0.0091 26.4 15.6 183 392-578 150-350 (466)
500 PF12926 MOZART2: Mitotic-spin 38.0 1.6E+02 0.0036 21.7 6.0 42 167-208 28-69 (88)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=4e-66 Score=552.57 Aligned_cols=536 Identities=19% Similarity=0.261 Sum_probs=496.5
Q ss_pred HHHHHHhhcCCCChHHHHHHHHhccCCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 045674 98 LDSFCRKFLIKLSPNFVSFVLRNHDVSKRPNVGLRLFTWAARQKKYSHNLECYISLIDCLALCGDVDRVRLVFNELKEKG 177 (650)
Q Consensus 98 l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 177 (650)
+..+........+......+...+...|+++.|+++|+++.+.+-.+++...+..++..|.+.|.+++|..+|+.|..
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-- 434 (1060)
T PLN03218 357 LAAYNGGVSGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-- 434 (1060)
T ss_pred HHHhccccCCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC--
Confidence 333333333333444555566666678999999999999988766677888888999999999999999999998874
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhhHHH
Q 045674 178 FLMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMFIESSELVFKVMENGKVGPDVVTYNT 257 (650)
Q Consensus 178 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 257 (650)
|+..+|+.++.+|++.|+++.|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.
T Consensus 435 --pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTyna 512 (1060)
T PLN03218 435 --PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGA 512 (1060)
T ss_pred --CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHhc
Q 045674 258 MIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDE--KGIEIPSHAYNLVIGGLCKV 335 (650)
Q Consensus 258 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~ 335 (650)
+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.. .++.||..+|+.++.+|++.
T Consensus 513 LI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~ 592 (1060)
T PLN03218 513 LIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANA 592 (1060)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999999999999999999999999999999986 67899999999999999999
Q ss_pred CChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHH
Q 045674 336 GKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYF 415 (650)
Q Consensus 336 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 415 (650)
|++++|.++|+.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++
T Consensus 593 G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~ 672 (1060)
T PLN03218 593 GQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEIL 672 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 045674 416 EFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQ 495 (650)
Q Consensus 416 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 495 (650)
+.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.|
T Consensus 673 ~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~P 752 (1060)
T PLN03218 673 QDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCP 752 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----c-------------------CCHHHHH
Q 045674 496 TVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCL----S-------------------GKVARAC 552 (650)
Q Consensus 496 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~-------------------g~~~~A~ 552 (650)
|..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|+.++..|.+ . +..++|.
T Consensus 753 d~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al 832 (1060)
T PLN03218 753 NTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWAL 832 (1060)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHH
Confidence 9999999999999999999999999999999999999999998865431 1 2246799
Q ss_pred HHHHHHhhCCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 045674 553 KILDELAPKGII-PETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVG 631 (650)
Q Consensus 553 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 631 (650)
.+|++|.+.|.. +..+|..++.++++.+....+..+++.+...+..++..+|+.+++++.+. .++|..++++|.+.|
T Consensus 833 ~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~G 910 (1060)
T PLN03218 833 MVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLG 910 (1060)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcC
Confidence 999999999987 88999999999999999999999999998777788999999999987432 468999999999999
Q ss_pred CCChhhhh
Q 045674 632 YDRMGSIK 639 (650)
Q Consensus 632 ~~~~~~~~ 639 (650)
+.|+...+
T Consensus 911 i~p~~~~~ 918 (1060)
T PLN03218 911 VVPSVSFK 918 (1060)
T ss_pred CCCCcccc
Confidence 99987643
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.7e-63 Score=532.39 Aligned_cols=492 Identities=18% Similarity=0.268 Sum_probs=465.9
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 045674 145 HNLECYISLIDCLALCGDVDRVRLVFNELKEKGF-LMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFL 223 (650)
Q Consensus 145 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 223 (650)
++...|..+...+++.|++++|+++|++|.+.|+ +++...++.++..|.+.|..++|+.+|+.|.. ||..+|+.+
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~L 443 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNML 443 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHH
Confidence 4567788899999999999999999999999885 56777888999999999999999999999864 899999999
Q ss_pred HHHHHhcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 045674 224 MNGLVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDF 303 (650)
Q Consensus 224 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 303 (650)
+.+|++.|+++.|.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++
T Consensus 444 L~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ 523 (1060)
T PLN03218 444 MSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV 523 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH--cCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 045674 304 DSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIR--RGCQPNVAIYTALIDSYAKLGSMNEAINIFE 381 (650)
Q Consensus 304 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 381 (650)
++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|+
T Consensus 524 eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~ 603 (1060)
T PLN03218 524 AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ 603 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999987 5789999999999999999999999999999
Q ss_pred HHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 045674 382 RMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRD 461 (650)
Q Consensus 382 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 461 (650)
+|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 604 ~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd 683 (1060)
T PLN03218 604 MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLG 683 (1060)
T ss_pred HHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 045674 462 SYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIG 541 (650)
Q Consensus 462 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 541 (650)
..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.+.|+.||..+|..++.+
T Consensus 684 ~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a 763 (1060)
T PLN03218 684 TVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVA 763 (1060)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCC-cHHHHHHHHHHHHH----c-------------------CCHHHHHHHHHHHHHcCC
Q 045674 542 LCLSGKVARACKILDELAPKGII-PETAFEDMITCLCK----T-------------------GRIKEACKLADGIVDRER 597 (650)
Q Consensus 542 ~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~~~~~~~ 597 (650)
|++.|++++|.+++++|.+.|.. +..+|+.++..+.+ . +..++|..+|++|.+.|+
T Consensus 764 ~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi 843 (1060)
T PLN03218 764 SERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGT 843 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCC
Confidence 99999999999999999999988 78888888755331 1 234789999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCChhhhhh
Q 045674 598 EIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYDRMGSIKR 640 (650)
Q Consensus 598 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 640 (650)
.||..+|..++.++.+.+..+.+..+++.+...+..|+...++
T Consensus 844 ~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~ 886 (1060)
T PLN03218 844 LPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLS 886 (1060)
T ss_pred CCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhH
Confidence 9999999999988889999999999998888777777666554
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.5e-64 Score=553.07 Aligned_cols=541 Identities=19% Similarity=0.227 Sum_probs=367.8
Q ss_pred HHHHHHhcCCCchhhhHHHHHHhhcCC--CChHHHHHHHHhccCCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh
Q 045674 82 RQILNLLDGSSDMEANLDSFCRKFLIK--LSPNFVSFVLRNHDVSKRPNVGLRLFTWAARQKKYSHNLECYISLIDCLAL 159 (650)
Q Consensus 82 ~~~~~~l~~~~~~~~al~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 159 (650)
..+...+...+.+..++..+.++...+ .+...+..+++.+...+....|.+++..+.+.. ..++...++.++..|++
T Consensus 55 n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~n~li~~~~~ 133 (857)
T PLN03077 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSH-PSLGVRLGNAMLSMFVR 133 (857)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcC-CCCCchHHHHHHHHHHh
Confidence 445555556677777776666554433 233334445555555555566666665554432 33444455555555555
Q ss_pred cCChhHHHHHHHHH-------------------------------HHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 045674 160 CGDVDRVRLVFNEL-------------------------------KEKGFLMTVSAANSLIKSFGGLGMVEELLWVWRSM 208 (650)
Q Consensus 160 ~g~~~~A~~~~~~~-------------------------------~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 208 (650)
.|+++.|+.+|++| ...|+.||..+|+.++.++...++++.+.+++..+
T Consensus 134 ~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~ 213 (857)
T PLN03077 134 FGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHV 213 (857)
T ss_pred CCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHH
Confidence 55555555555555 44444444444444444444444444444444444
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHH
Q 045674 209 KENGIEPSLYTYNFLMNGLVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKI 288 (650)
Q Consensus 209 ~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 288 (650)
.+.|+.||..+++.|+.+|++.|+++.|..+|++|. .+|..+||++|.+|++.|+.++|+++|++|.+.|+.||..
T Consensus 214 ~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ 289 (857)
T PLN03077 214 VRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLM 289 (857)
T ss_pred HHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChh
Confidence 444444455555666666666666667777776665 4566677777777777777777777777777777777777
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 045674 289 TYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYA 368 (650)
Q Consensus 289 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 368 (650)
||+.++.+|++.|+.+.+.+++..|.+.|..||..+|+.++.+|++.|++++|.++|++|.. ||..+|+.++.+|+
T Consensus 290 ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~ 365 (857)
T PLN03077 290 TITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYE 365 (857)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777776643 46666777777777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 045674 369 KLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEE 448 (650)
Q Consensus 369 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 448 (650)
+.|++++|+++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.+.+.|+.++..+|+.|+.+|++.|++++|.+
T Consensus 366 ~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~ 445 (857)
T PLN03077 366 KNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALE 445 (857)
T ss_pred hCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 045674 449 LFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGI 528 (650)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 528 (650)
+|++|.+ +|..+|+.++.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|+.+.+.+++..+.+.|+
T Consensus 446 vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~ 520 (857)
T PLN03077 446 VFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGI 520 (857)
T ss_pred HHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCC
Confidence 7776643 4566677777777777777777777777764 4667777777777777777777777777777777777
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 045674 529 TPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALI 608 (650)
Q Consensus 529 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 608 (650)
.++..+++.++.+|.+.|++++|.++|+.+ ..+..+|+.++.+|++.|+.++|.++|++|.+.|+.||..+|..++
T Consensus 521 ~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll 596 (857)
T PLN03077 521 GFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLL 596 (857)
T ss_pred CccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHH
Confidence 777777777777888888888888888776 3477888999999999999999999999998888889999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHH-HCCCCChhhhhh
Q 045674 609 NALRKAGNADLAIKLMHSKI-GVGYDRMGSIKR 640 (650)
Q Consensus 609 ~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~ 640 (650)
.+|.+.|++++|.++|++|. +.|..|+...|.
T Consensus 597 ~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~ 629 (857)
T PLN03077 597 CACSRSGMVTQGLEYFHSMEEKYSITPNLKHYA 629 (857)
T ss_pred HHHhhcChHHHHHHHHHHHHHHhCCCCchHHHH
Confidence 99999999999999999998 578888755443
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.4e-62 Score=537.52 Aligned_cols=524 Identities=20% Similarity=0.308 Sum_probs=409.3
Q ss_pred hcCCCchhhhHHHHHHhhcCCCChH--HHHHHHHhccCCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhH
Q 045674 88 LDGSSDMEANLDSFCRKFLIKLSPN--FVSFVLRNHDVSKRPNVGLRLFTWAARQKKYSHNLECYISLIDCLALCGDVDR 165 (650)
Q Consensus 88 l~~~~~~~~al~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 165 (650)
+...+..+.+++.|.++...+..|+ .+..+++.+...+++..+.+++..+.+. ++.++..+++.++.+|++.|++++
T Consensus 162 ~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~n~Li~~y~k~g~~~~ 240 (857)
T PLN03077 162 YAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRF-GFELDVDVVNALITMYVKCGDVVS 240 (857)
T ss_pred HHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHc-CCCcccchHhHHHHHHhcCCCHHH
Confidence 3345555666665555543333333 3334555555555566666666555543 356677778888889999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 045674 166 VRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMFIESSELVFKVMEN 245 (650)
Q Consensus 166 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~ 245 (650)
|..+|++|.+ +|..+|+.++.+|++.|++++|+++|++|...|+.||..+|+.++.++.+.|+.+.|.+++..+.+
T Consensus 241 A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~ 316 (857)
T PLN03077 241 ARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVK 316 (857)
T ss_pred HHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 9999998864 477889999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 045674 246 GKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAY 325 (650)
Q Consensus 246 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 325 (650)
.|+.||..+|+.|+.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|+++|++|.+.|+.||..+|
T Consensus 317 ~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~ 392 (857)
T PLN03077 317 TGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITI 392 (857)
T ss_pred hCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeH
Confidence 8889999999999999999999999999999885 467888999999999999999999999999988888999999
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc
Q 045674 326 NLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKN 405 (650)
Q Consensus 326 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 405 (650)
+.++.+|++.|++++|.++++.+.+.|+.|+..+|+.|+.+|++.|++++|.++|++|.+ +|..+|+.++.+|++.
T Consensus 393 ~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~ 468 (857)
T PLN03077 393 ASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLN 468 (857)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHC
Confidence 999999999999999999999999999989999999999999999999999999988874 5777888888888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 045674 406 ERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALF 485 (650)
Q Consensus 406 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 485 (650)
|+.++|+.+|++|.. +..||..+|+.++.+|++.|+++.+.+++..+.+.|+.+|..+++.|+.+|++.|++++|.++|
T Consensus 469 g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f 547 (857)
T PLN03077 469 NRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQF 547 (857)
T ss_pred CCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHH
Confidence 888888888888875 4778888888888888888888888888888887777777777777777777777777777777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh-hCCCC
Q 045674 486 KRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELA-PKGII 564 (650)
Q Consensus 486 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~ 564 (650)
+.+ .+|..+||.++.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|. +.+..
T Consensus 548 ~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~ 622 (857)
T PLN03077 548 NSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSIT 622 (857)
T ss_pred Hhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCC
Confidence 665 357777777777777777777777777777777777777777777777777777777777777776 44444
Q ss_pred -cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 045674 565 -PETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYD 633 (650)
Q Consensus 565 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 633 (650)
+..+|..++.+|++.|++++|.+++++|. +.||..+|..|+.+|..+|+.+.|....+++++..+.
T Consensus 623 P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~ 689 (857)
T PLN03077 623 PNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPN 689 (857)
T ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Confidence 55677777777777777777777777663 4566666666666666666666666666666655444
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.4e-61 Score=514.04 Aligned_cols=509 Identities=17% Similarity=0.234 Sum_probs=457.9
Q ss_pred HHHHHHhccCCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 045674 114 VSFVLRNHDVSKRPNVGLRLFTWAARQKKYSHNLECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFG 193 (650)
Q Consensus 114 ~~~~l~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 193 (650)
+..++..+...|++++|+++|.|+....++.++..+|+.++.++++.++++.|..++..+.+.|+.++..+++.|+..|+
T Consensus 90 ~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~ 169 (697)
T PLN03081 90 LCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHV 169 (697)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHh
Confidence 44456666678899999999999988766788999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCChhHHHH
Q 045674 194 GLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAME 273 (650)
Q Consensus 194 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 273 (650)
+.|++++|.++|++|. .||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.++++.|..+.+.+
T Consensus 170 k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~ 245 (697)
T PLN03081 170 KCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQ 245 (697)
T ss_pred cCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHH
Confidence 9999999999999995 478999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 045674 274 KFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGC 353 (650)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 353 (650)
++..+.+.|+.+|..+++.|+.+|++.|++++|.++|++|.. +|..+|+.++.+|++.|+.++|.++|++|.+.|+
T Consensus 246 l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~ 321 (697)
T PLN03081 246 LHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGV 321 (697)
T ss_pred HHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999999864 4888999999999999999999999999999999
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 045674 354 QPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSL 433 (650)
Q Consensus 354 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 433 (650)
.||..+|+.++.+|++.|++++|.+++..|.+.|+.||..+++.++.+|++.|++++|.++|++|.+ +|..+|+.+
T Consensus 322 ~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~l 397 (697)
T PLN03081 322 SIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNAL 397 (697)
T ss_pred CCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999864 588899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCC
Q 045674 434 IDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMED-EGCDQTVYTYTILINGMFKEHR 512 (650)
Q Consensus 434 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~ 512 (650)
|.+|++.|+.++|.++|++|.+.|+.||..+|+.++.+|.+.|.+++|.++|+.|.+ .|+.|+..+|+.++.+|++.|+
T Consensus 398 I~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~ 477 (697)
T PLN03081 398 IAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGL 477 (697)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999999999999999976 5899999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045674 513 NEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGI 592 (650)
Q Consensus 513 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 592 (650)
+++|.+++++| +..|+..+|+.++.+|...|+++.|..+++++.+.+|.+...|..++.+|++.|++++|.++++.|
T Consensus 478 ~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m 554 (697)
T PLN03081 478 LDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETL 554 (697)
T ss_pred HHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHH
Confidence 99999998765 578999999999999999999999999999999888888889999999999999999999999999
Q ss_pred HHcCCCCCH-HHHHHHH-------HHHH----hcCCHHHHHHHHHHHHHCCCCChhh
Q 045674 593 VDREREIPG-KIRTALI-------NALR----KAGNADLAIKLMHSKIGVGYDRMGS 637 (650)
Q Consensus 593 ~~~~~~~~~-~~~~~l~-------~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~ 637 (650)
.+.|+...+ ..|..+. ..-. ...-++...++..++.+.|+.|+..
T Consensus 555 ~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~ 611 (697)
T PLN03081 555 KRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEEN 611 (697)
T ss_pred HHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 998865432 2221110 0000 0112455667888888899988743
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=7.3e-61 Score=511.44 Aligned_cols=473 Identities=19% Similarity=0.273 Sum_probs=451.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 045674 146 NLECYISLIDCLALCGDVDRVRLVFNELKEKG-FLMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLM 224 (650)
Q Consensus 146 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll 224 (650)
+...|+.++..|.+.|++++|..+|+.|...+ +.++..+|+.++.++.+.++.+.+.+++..|.+.|+.||..+|+.++
T Consensus 86 ~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li 165 (697)
T PLN03081 86 SGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVL 165 (697)
T ss_pred CceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 34568889999999999999999999998764 67899999999999999999999999999999999999999999999
Q ss_pred HHHHhcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 045674 225 NGLVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFD 304 (650)
Q Consensus 225 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 304 (650)
..|++.|+++.|.++|++|. .||..+|+.++.+|++.|++++|+++|++|.+.|+.|+..+|..++.+|...|+.+
T Consensus 166 ~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~ 241 (697)
T PLN03081 166 LMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSAR 241 (697)
T ss_pred HHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHH
Confidence 99999999999999999997 58999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045674 305 SCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMK 384 (650)
Q Consensus 305 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 384 (650)
.+.+++..+.+.|..++..+++.|+.+|++.|++++|.++|++|.. +|..+|+.|+.+|++.|++++|+++|++|.
T Consensus 242 ~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~ 317 (697)
T PLN03081 242 AGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMR 317 (697)
T ss_pred HHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999965 499999999999999999999999999999
Q ss_pred HCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 045674 385 YEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYC 464 (650)
Q Consensus 385 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 464 (650)
+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.++..+|+.++.+|++.|++++|.++|++|.+ +|..+
T Consensus 318 ~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t 393 (697)
T PLN03081 318 DSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLIS 393 (697)
T ss_pred HcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999864 68899
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHH
Q 045674 465 YNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMID-KGITPTAASFRALSIGLC 543 (650)
Q Consensus 465 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~~ 543 (650)
|+.++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|+.++|.++|+.|.+ .|+.|+..+|+.++.+|+
T Consensus 394 ~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~ 473 (697)
T PLN03081 394 WNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLG 473 (697)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999985 699999999999999999
Q ss_pred hcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 045674 544 LSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKL 623 (650)
Q Consensus 544 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 623 (650)
+.|++++|.++++++.. ..+..+|+.++.++...|+++.|..+++++.+.+ +.+..+|..+++.|.+.|++++|.++
T Consensus 474 r~G~~~eA~~~~~~~~~--~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~-p~~~~~y~~L~~~y~~~G~~~~A~~v 550 (697)
T PLN03081 474 REGLLDEAYAMIRRAPF--KPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG-PEKLNNYVVLLNLYNSSGRQAEAAKV 550 (697)
T ss_pred hcCCHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC-CCCCcchHHHHHHHHhCCCHHHHHHH
Confidence 99999999999987631 2377889999999999999999999999998765 55678999999999999999999999
Q ss_pred HHHHHHCCCC
Q 045674 624 MHSKIGVGYD 633 (650)
Q Consensus 624 ~~~~~~~~~~ 633 (650)
+++|.++|..
T Consensus 551 ~~~m~~~g~~ 560 (697)
T PLN03081 551 VETLKRKGLS 560 (697)
T ss_pred HHHHHHcCCc
Confidence 9999999986
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.7e-34 Score=323.30 Aligned_cols=531 Identities=11% Similarity=0.055 Sum_probs=355.1
Q ss_pred CCCchhhhHHHHHHhhcCC-CChHHHHHHHHhccCCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 045674 90 GSSDMEANLDSFCRKFLIK-LSPNFVSFVLRNHDVSKRPNVGLRLFTWAARQKKYSHNLECYISLIDCLALCGDVDRVRL 168 (650)
Q Consensus 90 ~~~~~~~al~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 168 (650)
..++.+.++..+....... .++.....+...+...|++++|.++|..+... .+.+...+..++..+...|++++|..
T Consensus 341 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~ 418 (899)
T TIGR02917 341 RLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATEL--DPENAAARTQLGISKLSQGDPSEAIA 418 (899)
T ss_pred HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhCCChHHHHH
Confidence 3444555554444332222 12233333333444456666666666655543 23345555566666666666666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCC
Q 045674 169 VFNELKEKGFLMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMFIESSELVFKVMENGKV 248 (650)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~ 248 (650)
.++++.+.. +........++..+.+.|++++|..+++++... .+.+..++..+...+...|++++|...|+++.+..
T Consensus 419 ~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~- 495 (899)
T TIGR02917 419 DLETAAQLD-PELGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE- 495 (899)
T ss_pred HHHHHHhhC-CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-
Confidence 666665543 223344445555666666666666666666554 23355666667777777777777777777766543
Q ss_pred CCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 045674 249 GPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLV 328 (650)
Q Consensus 249 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 328 (650)
+.+...+..++..+...|++++|.+.++++...+ +.+..++..+...+...|++++|...++++...+. .+...+..+
T Consensus 496 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l 573 (899)
T TIGR02917 496 PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNP-QEIEPALAL 573 (899)
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchhHHHHH
Confidence 3345566666677777777777777777776654 33556666677777777777777777777766542 345566667
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCH
Q 045674 329 IGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERL 408 (650)
Q Consensus 329 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 408 (650)
+..+...|++++|..+++.+.+.. +.+...|..++.+|...|++++|+..|+++.+.. ..+...+..+...+...|++
T Consensus 574 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 651 (899)
T TIGR02917 574 AQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNY 651 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCH
Confidence 777777777777777777776642 3356677777777777777777777777776543 22455666777777777777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045674 409 EEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRM 488 (650)
Q Consensus 409 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 488 (650)
++|...++++.+..+. +...+..++..+...|++++|..+++.+.+.+ +.+...+..++..+...|++++|.+.|+++
T Consensus 652 ~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 729 (899)
T TIGR02917 652 AKAITSLKRALELKPD-NTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKA 729 (899)
T ss_pred HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 7777777777766544 56667777777777777777777777777764 566677777777777788888888888777
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHH
Q 045674 489 EDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETA 568 (650)
Q Consensus 489 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 568 (650)
...++ +..++..++.++...|++++|.+.++++.+..+. +...+..++..|...|++++|..+|+++.+.+|.+..+
T Consensus 730 ~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 806 (899)
T TIGR02917 730 LKRAP--SSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPN-DAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVV 806 (899)
T ss_pred HhhCC--CchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHH
Confidence 77643 3355666777777788888888888777766443 66777777777888888888888888888777777777
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCChh
Q 045674 569 FEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYDRMG 636 (650)
Q Consensus 569 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 636 (650)
+..++.++...|+ .+|+.+++++++.. +.++.++..++.++...|++++|.+.++++++.++....
T Consensus 807 ~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 872 (899)
T TIGR02917 807 LNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAA 872 (899)
T ss_pred HHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH
Confidence 8888888888888 77888888887764 556677777888888888888888888888887776333
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2e-34 Score=324.45 Aligned_cols=530 Identities=14% Similarity=0.064 Sum_probs=460.8
Q ss_pred HHHHhcCCCchhhhHHHHHHhhcCCCC-hHHHHHHHHhccCCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCC
Q 045674 84 ILNLLDGSSDMEANLDSFCRKFLIKLS-PNFVSFVLRNHDVSKRPNVGLRLFTWAARQKKYSHNLECYISLIDCLALCGD 162 (650)
Q Consensus 84 ~~~~l~~~~~~~~al~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 162 (650)
+...+...++++.++..+.+....... +.........+...|+++.|+..|..+.... +........++..+.+.|+
T Consensus 369 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~ 446 (899)
T TIGR02917 369 LGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLD--PELGRADLLLILSYLRSGQ 446 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC--CcchhhHHHHHHHHHhcCC
Confidence 333444678888888888776544332 3333344455567899999999999887653 3345667778899999999
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 045674 163 VDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMFIESSELVFKV 242 (650)
Q Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~ 242 (650)
+++|..+++.+.... +.+...+..++..|...|++++|.+.|+++.+.. +.+...+..+...+...|++++|...++.
T Consensus 447 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 524 (899)
T TIGR02917 447 FDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEK 524 (899)
T ss_pred HHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999998764 6678899999999999999999999999998864 34667788888999999999999999999
Q ss_pred HhcCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 045674 243 MENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPS 322 (650)
Q Consensus 243 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 322 (650)
+.... +.+..++..+...+.+.|+.++|..+++++...+ +.+...+..++..+...|++++|..+++.+.... +.+.
T Consensus 525 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 601 (899)
T TIGR02917 525 VLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSP 601 (899)
T ss_pred HHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCH
Confidence 98765 4578899999999999999999999999998775 4467788889999999999999999999998764 4477
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 045674 323 HAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGL 402 (650)
Q Consensus 323 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 402 (650)
..+..++.++...|++++|...|+.+.+.. +.+...+..++.++...|++++|..+|+++.+.. ..+..++..++..+
T Consensus 602 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 679 (899)
T TIGR02917 602 EAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLL 679 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 899999999999999999999999998864 3367788889999999999999999999998763 23577899999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 045674 403 CKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEAL 482 (650)
Q Consensus 403 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 482 (650)
...|++++|.++++.+.+.++. +...+..++..+...|++++|.+.|+.+...+ |+..++..++.++.+.|++++|.
T Consensus 680 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~ 756 (899)
T TIGR02917 680 LAAKRTESAKKIAKSLQKQHPK-AALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAV 756 (899)
T ss_pred HHcCCHHHHHHHHHHHHhhCcC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHH
Confidence 9999999999999999988755 77788889999999999999999999999975 55578888999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 045674 483 ALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKG 562 (650)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 562 (650)
+.++++.+..+. +...+..++..|...|++++|..+|+++.+..+. +...+..+++.+...|+ .+|+.+++++.+..
T Consensus 757 ~~~~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~ 833 (899)
T TIGR02917 757 KTLEAWLKTHPN-DAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPD-NAVVLNNLAWLYLELKD-PRALEYAEKALKLA 833 (899)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC
Confidence 999999987554 8889999999999999999999999999987654 78889999999999999 88999999999998
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045674 563 IIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIG 629 (650)
Q Consensus 563 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 629 (650)
+.++..+..++.++...|++++|.++++++++.+ +.+..++..++.++.+.|++++|+++++++++
T Consensus 834 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 834 PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA-PEAAAIRYHLALALLATGRKAEARKELDKLLN 899 (899)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Confidence 8899999999999999999999999999999987 66899999999999999999999999999874
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=1.2e-27 Score=268.68 Aligned_cols=539 Identities=12% Similarity=0.032 Sum_probs=356.0
Q ss_pred hHHHHHHHhcCCCchhhhHHHHHHhhcCC-CChHHHHHHHHhccCCCChhHHHHHHHHHHHcCCCCCCHHH---------
Q 045674 80 WVRQILNLLDGSSDMEANLDSFCRKFLIK-LSPNFVSFVLRNHDVSKRPNVGLRLFTWAARQKKYSHNLEC--------- 149 (650)
Q Consensus 80 ~~~~~~~~l~~~~~~~~al~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~--------- 149 (650)
|+-.-..+-...++.+.+.+.+.+...+. -+|+.+....+.+...|+.++|.+.++.+.+.. |.+...
T Consensus 30 ~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~ 107 (1157)
T PRK11447 30 QLLEQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLL 107 (1157)
T ss_pred HHHHHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHh
Confidence 33333444445677777777777665444 357778778888888999999999999776653 233332
Q ss_pred -------HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 045674 150 -------YISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSA-ANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYN 221 (650)
Q Consensus 150 -------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 221 (650)
....+..+.+.|++++|.+.|+.+.+.+ +++... ...+.......|+.++|++.++++.+.. +.+...+.
T Consensus 108 ~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~ 185 (1157)
T PRK11447 108 STPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRN 185 (1157)
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 2345667889999999999999998764 444332 1112222234689999999999999874 33677788
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhcCCC------------------C--------------CChhhH--------------
Q 045674 222 FLMNGLVNSMFIESSELVFKVMENGKV------------------G--------------PDVVTY-------------- 255 (650)
Q Consensus 222 ~ll~~~~~~~~~~~A~~~~~~~~~~~~------------------~--------------~~~~~~-------------- 255 (650)
.+...+...|+.++|+..++++..... . |+....
T Consensus 186 ~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~ 265 (1157)
T PRK11447 186 TLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQL 265 (1157)
T ss_pred HHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhc
Confidence 888889999999999999988754310 0 000000
Q ss_pred -------HHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHH--
Q 045674 256 -------NTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPS-HAY-- 325 (650)
Q Consensus 256 -------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~-- 325 (650)
......+...|++++|+..|++..+.. +.+..++..+..++.+.|++++|+..|++..+....... ..+
T Consensus 266 ~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ 344 (1157)
T PRK11447 266 ADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWES 344 (1157)
T ss_pred cCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHH
Confidence 012345667799999999999998864 336788888999999999999999999998876433211 111
Q ss_pred ----------HHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhH
Q 045674 326 ----------NLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTY 395 (650)
Q Consensus 326 ----------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~ 395 (650)
......+.+.|++++|+..|+++++.. +.+...+..+..++...|++++|++.|+++.+.... +...+
T Consensus 345 ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~ 422 (1157)
T PRK11447 345 LLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAV 422 (1157)
T ss_pred HHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHH
Confidence 223456778899999999999999873 235667777889999999999999999998865211 23334
Q ss_pred HHHHHHH------------------------------------------HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 045674 396 GVIISGL------------------------------------------CKNERLEEAMQYFEFCRANGVAVNAMFYSSL 433 (650)
Q Consensus 396 ~~l~~~~------------------------------------------~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 433 (650)
..+...+ ...|++++|++.|+++.+..+. +...+..+
T Consensus 423 ~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~L 501 (1157)
T PRK11447 423 RGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRL 501 (1157)
T ss_pred HHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 3333333 3344555555555555444333 33444444
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH---------HHHHHH
Q 045674 434 IDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVY---------TYTILI 504 (650)
Q Consensus 434 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---------~~~~l~ 504 (650)
...|.+.|++++|...++++++.. +.+...+..+...+...++.++|+..++.+......++.. .+..+.
T Consensus 502 A~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a 580 (1157)
T PRK11447 502 AQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETA 580 (1157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHH
Confidence 555555555555555555554432 3334444444434444444444444444432211111110 111233
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHH
Q 045674 505 NGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKE 584 (650)
Q Consensus 505 ~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 584 (650)
..+...|++++|..+++. ...+...+..++..+.+.|++++|++.|+++++..|.+..++..++.++...|++++
T Consensus 581 ~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~e 655 (1157)
T PRK11447 581 NRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAA 655 (1157)
T ss_pred HHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 445556666666666551 123555667788888888999999999999988888888888888999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 045674 585 ACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYD 633 (650)
Q Consensus 585 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 633 (650)
|++.++++++.. +.+..++..++.++...|++++|+++++++++..+.
T Consensus 656 A~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~ 703 (1157)
T PRK11447 656 ARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKS 703 (1157)
T ss_pred HHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCcc
Confidence 999998888764 556677778888888889999999999988887654
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=1.2e-26 Score=260.60 Aligned_cols=529 Identities=10% Similarity=-0.013 Sum_probs=377.8
Q ss_pred HhcCCCchhhhHHHHHHhhcCCCCh-HHHHHH-HHhccCCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChh
Q 045674 87 LLDGSSDMEANLDSFCRKFLIKLSP-NFVSFV-LRNHDVSKRPNVGLRLFTWAARQKKYSHNLECYISLIDCLALCGDVD 164 (650)
Q Consensus 87 ~l~~~~~~~~al~~~~~~~~~~~~~-~~~~~~-l~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 164 (650)
++...++++.|+..|...+...... ...... .......+++++|++.++.+... .|.+...+..++.++...|+++
T Consensus 121 ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~--~P~~~~~~~~LA~ll~~~g~~~ 198 (1157)
T PRK11447 121 LLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNAD--YPGNTGLRNTLALLLFSSGRRD 198 (1157)
T ss_pred HHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHccCCHH
Confidence 4556889999999888776543332 222222 22234568999999999988776 4567888999999999999999
Q ss_pred HHHHHHHHHHHCCCC----------------CC---HHHHH----------------------------------HHHHH
Q 045674 165 RVRLVFNELKEKGFL----------------MT---VSAAN----------------------------------SLIKS 191 (650)
Q Consensus 165 ~A~~~~~~~~~~~~~----------------~~---~~~~~----------------------------------~l~~~ 191 (650)
+|+..++++.+.... .+ ...+. .+...
T Consensus 199 eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~ 278 (1157)
T PRK11447 199 EGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLA 278 (1157)
T ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHH
Confidence 999999988653210 00 00000 11334
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCC-ChhhH------------HHH
Q 045674 192 FGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMFIESSELVFKVMENGKVGP-DVVTY------------NTM 258 (650)
Q Consensus 192 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~------------~~l 258 (650)
+...|++++|+..|++..+.. +.+...+..+...+.+.|++++|+..|++..+..... ....| ...
T Consensus 279 ~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~ 357 (1157)
T PRK11447 279 AVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQ 357 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHH
Confidence 456677777777777777653 2256666777777777777777777777776542111 11111 112
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 045674 259 IKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKC 338 (650)
Q Consensus 259 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 338 (650)
...+.+.|++++|+..|+++.+.. +.+...+..+..++...|++++|++.|++..+... .+...+..+...+. .++.
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~~l~~-~~~~ 434 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVRGLANLYR-QQSP 434 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH-hcCH
Confidence 345566777777777777777653 23455666667777777777777777777776532 24445555555553 3456
Q ss_pred HHHHHHHHHHHHcCCC--------cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHH
Q 045674 339 IEGHAIFESMIRRGCQ--------PNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEE 410 (650)
Q Consensus 339 ~~a~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 410 (650)
++|..+++.+...... .....+..++..+...|++++|+..|++..+.... +...+..+...|.+.|++++
T Consensus 435 ~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~ 513 (1157)
T PRK11447 435 EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQ 513 (1157)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHH
Confidence 7777666554322100 01123445667788899999999999999886322 45677788889999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH---------HHHHHHHHHHHHcCCHHHH
Q 045674 411 AMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDS---------YCYNVLIDALAKCGKLDEA 481 (650)
Q Consensus 411 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~~~l~~~~~~~g~~~~A 481 (650)
|...++++.+..+. +...+..+...+...++.++|+..++.+......++. ..+..++..+...|++++|
T Consensus 514 A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA 592 (1157)
T PRK11447 514 ADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEA 592 (1157)
T ss_pred HHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHH
Confidence 99999999887655 5555555666678899999999999876543222222 1233567778899999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 045674 482 LALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPK 561 (650)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 561 (650)
+++++. .+.+...+..+...+...|++++|+..|+++++..+. +...+..++..+...|++++|++.++.+.+.
T Consensus 593 ~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~ 666 (1157)
T PRK11447 593 EALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQLAKLPAT 666 (1157)
T ss_pred HHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 999872 2346667788899999999999999999999987655 7888999999999999999999999999998
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045674 562 GIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREI-----PGKIRTALINALRKAGNADLAIKLMHSKIG 629 (650)
Q Consensus 562 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 629 (650)
.+.+...+..++.++...|++++|.+++++++...... +..++..++..+...|++++|+..|++++.
T Consensus 667 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 667 ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 88888889999999999999999999999998764111 224666778999999999999999999985
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.97 E-value=1.8e-26 Score=218.41 Aligned_cols=448 Identities=15% Similarity=0.115 Sum_probs=358.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 045674 150 YISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVN 229 (650)
Q Consensus 150 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 229 (650)
...++.-+.+.|++.+|++....+-..+ +.+......+-..+.+..+.+.....-....+. .+.-..+|..+.+.+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHH
Confidence 4456666778888888888877665543 444555555556666666777665554444443 23356788888888888
Q ss_pred cCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHHHH
Q 045674 230 SMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITY-MTLIQACYLEGDFDSCLS 308 (650)
Q Consensus 230 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~ 308 (650)
.|+++.|...++.+++.. +..+..|..+..++...|+.+.|.+.|...++. .|+.... ..+...+-..|+.++|..
T Consensus 129 rg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred hchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHH
Confidence 899999999998888764 345788888888999999999999888888775 4554433 345555566888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 045674 309 LYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPN-VAIYTALIDSYAKLGSMNEAINIFERMKYEG 387 (650)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 387 (650)
.|.+.++... --...|..|...+...|+...|+..|++.+.. .|+ ...|..|...|...+.+++|+..|.+....
T Consensus 206 cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l- 281 (966)
T KOG4626|consen 206 CYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL- 281 (966)
T ss_pred HHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc-
Confidence 8888877632 24567888888888999999999999998876 444 457888999999999999999999988765
Q ss_pred CCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 045674 388 VEPD-EVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYN 466 (650)
Q Consensus 388 ~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 466 (650)
.|+ ...+..+...|..+|.++-|++.|++.++..+. -...|+.|..++-..|++.+|...+.+.+... +......+
T Consensus 282 -rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~ 358 (966)
T KOG4626|consen 282 -RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMN 358 (966)
T ss_pred -CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHH
Confidence 444 567888888899999999999999999988665 56789999999999999999999999999874 66788899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhc
Q 045674 467 VLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPT-AASFRALSIGLCLS 545 (650)
Q Consensus 467 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 545 (650)
.|+..|...|.+++|..+|....+-.+. -...++.|...|-..|++++|+..++++++ +.|+ ...++.++..|-..
T Consensus 359 NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~ 435 (966)
T KOG4626|consen 359 NLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEM 435 (966)
T ss_pred HHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHh
Confidence 9999999999999999999999886433 456788899999999999999999999987 4555 45889999999999
Q ss_pred CCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 045674 546 GKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRK 613 (650)
Q Consensus 546 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 613 (650)
|+.+.|...+.+++..+|.-.+++..|+.++...|+..+|+.-|+.+++.. |..+.++..++.++--
T Consensus 436 g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk-PDfpdA~cNllh~lq~ 502 (966)
T KOG4626|consen 436 GDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK-PDFPDAYCNLLHCLQI 502 (966)
T ss_pred hhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC-CCCchhhhHHHHHHHH
Confidence 999999999999999988888999999999999999999999999999886 5556777777666433
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.97 E-value=3e-27 Score=223.64 Aligned_cols=447 Identities=15% Similarity=0.084 Sum_probs=375.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHH
Q 045674 185 ANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCK 264 (650)
Q Consensus 185 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 264 (650)
...|.....+.|++.+|.+.-...-..+ +.+......+-..+.+..+++.....-...++.. +--..+|..+...+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 5567777788999999998777665543 2344444445566677777776555444444332 3457899999999999
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 045674 265 VGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAI 344 (650)
Q Consensus 265 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 344 (650)
.|++++|+.+++.+.+.. +-....|..+..++...|+.+.|.+.|.+.++.++. .......+...+-..|++.+|...
T Consensus 129 rg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~-l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPD-LYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred hchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcc-hhhhhcchhHHHHhhcccchhHHH
Confidence 999999999999999874 226789999999999999999999999998886422 233444566667778999999999
Q ss_pred HHHHHHcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 045674 345 FESMIRRGCQPN-VAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPD-EVTYGVIISGLCKNERLEEAMQYFEFCRANG 422 (650)
Q Consensus 345 ~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 422 (650)
+.+.++. .|. ...|..|...+...|+.-.|+..|++..+. .|+ ...|..+...|...+.++.|+..|.+.....
T Consensus 207 YlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr 282 (966)
T KOG4626|consen 207 YLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR 282 (966)
T ss_pred HHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 9999886 333 457889999999999999999999999875 454 5688899999999999999999999988876
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 045674 423 VAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTI 502 (650)
Q Consensus 423 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 502 (650)
+. ....+..+...|...|.+|-|+..+++.++.. |.-...|+.|..++...|+..+|++.+.+.+...+. .....+.
T Consensus 283 pn-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~N 359 (966)
T KOG4626|consen 283 PN-HAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNN 359 (966)
T ss_pred Cc-chhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHH
Confidence 55 67778889999999999999999999999985 566789999999999999999999999999987443 6778899
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCH
Q 045674 503 LINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRI 582 (650)
Q Consensus 503 l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 582 (650)
|+..+...|.+++|..+|.+..+-.+. -...++.|+..|-.+|++++|+..|++++...|.-.+.+..++..|-..|+.
T Consensus 360 Lgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v 438 (966)
T KOG4626|consen 360 LGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDV 438 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhH
Confidence 999999999999999999999985433 4567889999999999999999999999999888899999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-Chhhhhhhhcc
Q 045674 583 KEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYD-RMGSIKRRVKF 644 (650)
Q Consensus 583 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~ 644 (650)
+.|+..|.+++..+ |.-.++...|+..|...|+..+|++.|+++++..|+ |+.-++.+...
T Consensus 439 ~~A~q~y~rAI~~n-Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~l 500 (966)
T KOG4626|consen 439 SAAIQCYTRAIQIN-PTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCL 500 (966)
T ss_pred HHHHHHHHHHHhcC-cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHH
Confidence 99999999999876 666889999999999999999999999999999998 77777766543
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.96 E-value=3.4e-23 Score=221.75 Aligned_cols=519 Identities=9% Similarity=-0.018 Sum_probs=361.0
Q ss_pred CCCchhhhHHHHHHhhcCCCC-hHHHHHHHHhccCCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 045674 90 GSSDMEANLDSFCRKFLIKLS-PNFVSFVLRNHDVSKRPNVGLRLFTWAARQKKYSHNLECYISLIDCLALCGDVDRVRL 168 (650)
Q Consensus 90 ~~~~~~~al~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 168 (650)
..|+++.+++.|.+.....++ +.....+.+.+...|++++|+..++.+.+.. +.+...+..++.+ +++++|..
T Consensus 56 ~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La~i----~~~~kA~~ 129 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLAAI----PVEVKSVT 129 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHHHh----ccChhHHH
Confidence 468889999999887755554 3444445577788999999999999888753 3455555544333 89999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHH--------HHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCChhHHHHH
Q 045674 169 VFNELKEKGFLMTVSAANSLIKS--------FGGLGMVEELLWVWRSMKENGIEPSLYTYNFL-MNGLVNSMFIESSELV 239 (650)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~l~~~--------~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-l~~~~~~~~~~~A~~~ 239 (650)
+++++.+.. |-+..++..+... |.+.++..+++ + .......|+..+.... ...|...+++++|+.+
T Consensus 130 ~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL---~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~l 204 (987)
T PRK09782 130 TVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQL---N-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTL 204 (987)
T ss_pred HHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHH---H-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHH
Confidence 999999875 5567777666666 66654444444 4 3333334445544444 8889999999999999
Q ss_pred HHHHhcCCCCCChhhHHHHHHHHHH-cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 045674 240 FKVMENGKVGPDVVTYNTMIKGYCK-VGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGI 318 (650)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 318 (650)
+.++.+.+ +.+......|...|.. .++ +++..+++.. ++-+...+..++..+.+.|+.++|.++++++.....
T Consensus 205 L~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~ 278 (987)
T PRK09782 205 YNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQSRITYATALAYRGEKARLQHYLIENKPLFT 278 (987)
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHHHHHHHHHHHHCCCHHHHHHHHHhCccccc
Confidence 99999876 4456667777778887 366 7777775532 235778888888999999999999888887654311
Q ss_pred C-CCHHH------------------------------HHHHHHHHHhcCChH----------------------------
Q 045674 319 E-IPSHA------------------------------YNLVIGGLCKVGKCI---------------------------- 339 (650)
Q Consensus 319 ~-~~~~~------------------------------~~~l~~~~~~~g~~~---------------------------- 339 (650)
. |.... ...++..+.+.++++
T Consensus 279 ~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 358 (987)
T PRK09782 279 TDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNK 358 (987)
T ss_pred CCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCch
Confidence 1 11000 011133333333333
Q ss_pred -----------------------------------HHHHHHHHHHHc-C-CCcCHHHHHHHHHHHHhcCC---HHHHHHH
Q 045674 340 -----------------------------------EGHAIFESMIRR-G-CQPNVAIYTALIDSYAKLGS---MNEAINI 379 (650)
Q Consensus 340 -----------------------------------~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~---~~~A~~~ 379 (650)
+|.++|+..... + ...+.....-++..|.+.+. ..++..+
T Consensus 359 ~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l 438 (987)
T PRK09782 359 AEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAIL 438 (987)
T ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHh
Confidence 333333333331 0 01112222233444444333 2222111
Q ss_pred ----------------------HHHHHHC-CC-CC--CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 045674 380 ----------------------FERMKYE-GV-EP--DEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSL 433 (650)
Q Consensus 380 ----------------------~~~~~~~-~~-~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 433 (650)
+...... +. .+ +...|..+..++.. ++.++|+..+.+.....+ +......+
T Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~P--d~~~~L~l 515 (987)
T PRK09782 439 SKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQP--DAWQHRAV 515 (987)
T ss_pred ccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCC--chHHHHHH
Confidence 1111100 11 11 34455555555554 777788887777766543 43344445
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 045674 434 IDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRN 513 (650)
Q Consensus 434 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 513 (650)
+..+...|++++|...|+++... +++...+..++..+.+.|++++|...+++.++..+. +...+..+...+...|++
T Consensus 516 A~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~ 592 (987)
T PRK09782 516 AYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQP 592 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCH
Confidence 55667899999999999998665 455566778888899999999999999999887533 333344444445566999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 045674 514 EEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIV 593 (650)
Q Consensus 514 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 593 (650)
++|...++++++. .|+...+..++.++.+.|++++|...+++++...|.+..++..++.++...|++++|++.+++++
T Consensus 593 ~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL 670 (987)
T PRK09782 593 ELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAH 670 (987)
T ss_pred HHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999999986 45688899999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 045674 594 DREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYDR 634 (650)
Q Consensus 594 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 634 (650)
+.. |.+..++..++.++...|++++|+..++++++..+..
T Consensus 671 ~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~ 710 (987)
T PRK09782 671 KGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQ 710 (987)
T ss_pred HhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 986 7789999999999999999999999999999988753
No 14
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.95 E-value=1.3e-22 Score=202.63 Aligned_cols=510 Identities=14% Similarity=0.102 Sum_probs=300.5
Q ss_pred CCCChhHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC---CCH
Q 045674 123 VSKRPNVGLRLFTWAARQ-KKYSHNLECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGL---GMV 198 (650)
Q Consensus 123 ~~~~~~~al~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~ 198 (650)
..+++..|+.+|..+... +...++ ....++.++++.|+.+.|+..|+++++.+ |.++.++..|...-... ..+
T Consensus 176 nkkdY~~al~yyk~al~inp~~~aD--~rIgig~Cf~kl~~~~~a~~a~~ralqLd-p~~v~alv~L~~~~l~~~d~~s~ 252 (1018)
T KOG2002|consen 176 NKKDYRGALKYYKKALRINPACKAD--VRIGIGHCFWKLGMSEKALLAFERALQLD-PTCVSALVALGEVDLNFNDSDSY 252 (1018)
T ss_pred ccccHHHHHHHHHHHHhcCcccCCC--ccchhhhHHHhccchhhHHHHHHHHHhcC-hhhHHHHHHHHHHHHHccchHHH
Confidence 346777788887765543 222333 33445666777777777777777776654 22233222222221111 223
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCC--CChhhHHHHHHHHHHcCChhHHHHHHH
Q 045674 199 EELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMFIESSELVFKVMENGKVG--PDVVTYNTMIKGYCKVGKTQKAMEKFR 276 (650)
Q Consensus 199 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~ 276 (650)
..++.++.+.-... .-|+...+.|.+.+.-.|++..+..+...+...... .-...|--+.++|-..|++++|..+|.
T Consensus 253 ~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~ 331 (1018)
T KOG2002|consen 253 KKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYM 331 (1018)
T ss_pred HHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 34444444443332 224444444455555555555555544444432111 012234444555555555555555554
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-------------------------------------C
Q 045674 277 AMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGI-------------------------------------E 319 (650)
Q Consensus 277 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------------------------------------~ 319 (650)
...+.+..--...+..+...+...|+++.+...|+.+.+... +
T Consensus 332 ~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~ 411 (1018)
T KOG2002|consen 332 ESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTP 411 (1018)
T ss_pred HHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhccc
Confidence 444332111122233344444555555555544444444321 2
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHH----HcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCH
Q 045674 320 IPSHAYNLVIGGLCKVGKCIEGHAIFESMI----RRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYE---GVEPDE 392 (650)
Q Consensus 320 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~p~~ 392 (650)
.|...|..+..++....-+. ++.+|..+. ..+-.+.+...|.++..+...|++++|...|.+.... ...+|.
T Consensus 412 ~d~~a~l~laql~e~~d~~~-sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de 490 (1018)
T KOG2002|consen 412 VDSEAWLELAQLLEQTDPWA-SLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDE 490 (1018)
T ss_pred ccHHHHHHHHHHHHhcChHH-HHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccc
Confidence 23444444444433322222 244444333 1233344455555666666666666666666655433 112222
Q ss_pred ------HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 045674 393 ------VTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYN 466 (650)
Q Consensus 393 ------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 466 (650)
.+-..+...+-..++.+.|.+.|..+.+..+. -...|..++.+....+...+|...++..+..+ ..++..+.
T Consensus 491 ~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~-YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~ars 568 (1018)
T KOG2002|consen 491 GKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG-YIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARS 568 (1018)
T ss_pred cccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch-hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHH
Confidence 11222333444455666666666666655432 22333333333334456667777777777653 55666777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHHCCCCCCHH
Q 045674 467 VLIDALAKCGKLDEALALFKRMEDEG-CDQTVYTYTILINGMFK------------EHRNEEALKLWDMMIDKGITPTAA 533 (650)
Q Consensus 467 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~------------~~~~~~A~~~~~~~~~~~~~p~~~ 533 (650)
.++..+.+...+..|.+-|+.+.+.- ..+|..+...|+..|.. .+..++|+++|.++++..+. |..
T Consensus 569 l~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~y 647 (1018)
T KOG2002|consen 569 LLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMY 647 (1018)
T ss_pred HHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhh
Confidence 77777777777777877776665532 22567777777775542 34578999999999987665 788
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHH
Q 045674 534 SFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDRER-EIPGKIRTALINALR 612 (650)
Q Consensus 534 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~ 612 (650)
.-+.++-++...|++.+|..+|.++.+...+...+|.+++++|...|+|..|+++|+..++.-. ..+..+...|+.++.
T Consensus 648 AANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y 727 (1018)
T KOG2002|consen 648 AANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWY 727 (1018)
T ss_pred hccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHH
Confidence 8888999999999999999999999988777889999999999999999999999999988743 346788999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCChhhhhh
Q 045674 613 KAGNADLAIKLMHSKIGVGYDRMGSIKR 640 (650)
Q Consensus 613 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 640 (650)
..|.+.+|.+.+..++...|....+..+
T Consensus 728 ~~~~~~eak~~ll~a~~~~p~~~~v~FN 755 (1018)
T KOG2002|consen 728 EAGKLQEAKEALLKARHLAPSNTSVKFN 755 (1018)
T ss_pred HhhhHHHHHHHHHHHHHhCCccchHHhH
Confidence 9999999999999999998886555444
No 15
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.95 E-value=1.7e-21 Score=208.78 Aligned_cols=527 Identities=10% Similarity=-0.003 Sum_probs=359.0
Q ss_pred HHHHHHhcCCCchhhhHHHHHHhhcCCCChHHHHHHHHhccCCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHH-----
Q 045674 82 RQILNLLDGSSDMEANLDSFCRKFLIKLSPNFVSFVLRNHDVSKRPNVGLRLFTWAARQKKYSHNLECYISLIDC----- 156 (650)
Q Consensus 82 ~~~~~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~----- 156 (650)
..+..++...++.+.++..+.+......+.......+... +++.+|...++.+.+. .+.+..++..++..
T Consensus 82 ~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ye~l~~~--~P~n~~~~~~la~~~~~~~ 156 (987)
T PRK09782 82 LYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTVEELLAQ--QKACDAVPTLRCRSEVGQN 156 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHHHHHHHh--CCCChhHHHHHHHHhhccc
Confidence 3444555567788888887777655544433333333222 6777888888865554 34456666666665
Q ss_pred ---HHhcCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cC
Q 045674 157 ---LALCGDVDRVRLVFNELKEKGFLMTVSA-ANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVN-SM 231 (650)
Q Consensus 157 ---~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~ 231 (650)
|.+. ++|.+.++ .......++..+ ...+...|.+.|++++|+.++.++.+.+.. +......|...|.. .+
T Consensus 157 ~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~ 231 (987)
T PRK09782 157 ALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQL 231 (987)
T ss_pred hhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhC
Confidence 5554 44444443 222221223333 333377777777777788777777776432 44445555555555 24
Q ss_pred ChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CCHHHH--------------------
Q 045674 232 FIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQ-PDKITY-------------------- 290 (650)
Q Consensus 232 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~-------------------- 290 (650)
+ +.+..+++.. +..+...+..++..|.+.|+.++|.++++++...... |...+|
T Consensus 232 ~-~~a~al~~~~----lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~ 306 (987)
T PRK09782 232 D-DRLLALQSQG----IFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTV 306 (987)
T ss_pred H-HHHHHHhchh----cccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhh
Confidence 4 5555554421 1345666667777777777777777666665432111 111111
Q ss_pred -------------------------------------------------------------------------HHHHHHH
Q 045674 291 -------------------------------------------------------------------------MTLIQAC 297 (650)
Q Consensus 291 -------------------------------------------------------------------------~~l~~~~ 297 (650)
..+....
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~ 386 (987)
T PRK09782 307 QFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQL 386 (987)
T ss_pred hhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 1111122
Q ss_pred HhcCCHHHHHHHHHHHHHC-C-CCCCHHHHHHHHHHHHhcCCh---HHHHHH----------------------HHHHHH
Q 045674 298 YLEGDFDSCLSLYHEMDEK-G-IEIPSHAYNLVIGGLCKVGKC---IEGHAI----------------------FESMIR 350 (650)
Q Consensus 298 ~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~---~~a~~~----------------------~~~~~~ 350 (650)
.+.|+.++|.++++..... + ...+......++..|.+.+.. .++..+ ++....
T Consensus 387 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (987)
T PRK09782 387 MQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVR 466 (987)
T ss_pred HHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHH
Confidence 3345556666666655541 1 112334455677777766552 222222 222211
Q ss_pred c-CC-Cc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 045674 351 R-GC-QP--NVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVN 426 (650)
Q Consensus 351 ~-~~-~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 426 (650)
. +. ++ +...|..+..++.. ++.++|+..+.+.... .|+......+...+...|++++|...|+++....+ +
T Consensus 467 al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p--~ 541 (987)
T PRK09782 467 LLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLHDM--S 541 (987)
T ss_pred hcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC--C
Confidence 1 11 23 56677888888876 8899999988888765 46655444455556789999999999999866533 3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 045674 427 AMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILING 506 (650)
Q Consensus 427 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 506 (650)
...+..++.++.+.|++++|...+++.++.+ +.+...+..+.....+.|++++|+..+++.++.. |+...+..+..+
T Consensus 542 ~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~ 618 (987)
T PRK09782 542 NEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATI 618 (987)
T ss_pred cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHH
Confidence 3445677888999999999999999999875 4555555555555566799999999999999874 568889999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHH
Q 045674 507 MFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEAC 586 (650)
Q Consensus 507 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 586 (650)
+.+.|++++|+..++++++..+. +...+..++.++...|++++|+..++++++..|.+..++..++.++...|++++|+
T Consensus 619 l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~ 697 (987)
T PRK09782 619 YRQRHNVPAAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQ 697 (987)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999999998655 77888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 045674 587 KLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYD 633 (650)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 633 (650)
..++++++.. +.+..+....++...+..+++.|.+.+++....++.
T Consensus 698 ~~l~~Al~l~-P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~ 743 (987)
T PRK09782 698 HYARLVIDDI-DNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFD 743 (987)
T ss_pred HHHHHHHhcC-CCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 9999999886 666677788888889999999999999998886654
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.95 E-value=1.5e-22 Score=213.76 Aligned_cols=432 Identities=12% Similarity=-0.016 Sum_probs=257.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 045674 149 CYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLV 228 (650)
Q Consensus 149 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 228 (650)
.+...+..+.+.|++++|+..|+++++. .|+...|..+..+|.+.|++++|++.+++..+.. +.+...+..+..++.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 4556777788888888888888887765 3466677777778888888888888888877753 235567777777778
Q ss_pred hcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 045674 229 NSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLS 308 (650)
Q Consensus 229 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 308 (650)
..|++++|...|..+.... ..+......++..+.. ..+........+.. +.+...+..+.. +...........
T Consensus 206 ~lg~~~eA~~~~~~~~~~~-~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~ 278 (615)
T TIGR00990 206 GLGKYADALLDLTASCIID-GFRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPA 278 (615)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchh
Confidence 8888888877776554332 1111111122211111 12222233332221 112222222222 111111111111
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHH---HhcCChHHHHHHHHHHHHcC-CCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 045674 309 LYHEMDEKGIEIPSHAYNLVIGGL---CKVGKCIEGHAIFESMIRRG-CQP-NVAIYTALIDSYAKLGSMNEAINIFERM 383 (650)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~a~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 383 (650)
-+....+.... ....+..+...+ ...+++++|.+.|+..++.+ ..| ....++.+...+...|++++|+..|++.
T Consensus 279 ~~~~~~~~~~~-~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~ka 357 (615)
T TIGR00990 279 GLEDSNELDEE-TGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKS 357 (615)
T ss_pred hhhcccccccc-cccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 11111111000 011111111111 22356777777777777653 122 3445666677777777777777777777
Q ss_pred HHCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 045674 384 KYEGVEPD-EVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDS 462 (650)
Q Consensus 384 ~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 462 (650)
.+. .|+ ...|..+...+...|++++|+..|+.+.+..+. +..++..++..+...|++++|+..|++.++.. |.+.
T Consensus 358 l~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~ 433 (615)
T TIGR00990 358 IEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFI 433 (615)
T ss_pred HHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCH
Confidence 765 333 446666677777777777777777777766544 56667777777777777777777777777764 5566
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH------HHH
Q 045674 463 YCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAA------SFR 536 (650)
Q Consensus 463 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~------~~~ 536 (650)
..+..++.++.+.|++++|+..|++.++..+. +...++.++.++...|++++|+..|+++++.....+.. .+.
T Consensus 434 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~ 512 (615)
T TIGR00990 434 FSHIQLGVTQYKEGSIASSMATFRRCKKNFPE-APDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLIN 512 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHH
Confidence 66777777777777777777777777765332 56667777777777777777777777777653321111 111
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 045674 537 ALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDRE 596 (650)
Q Consensus 537 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 596 (650)
..+..+...|++++|.+++++++..++.+..++..++.++...|++++|+++|+++.+..
T Consensus 513 ~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 513 KALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 111222335777777777777777766666677777777777777777777777777654
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.94 E-value=9e-22 Score=207.90 Aligned_cols=432 Identities=13% Similarity=-0.016 Sum_probs=239.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHH
Q 045674 185 ANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCK 264 (650)
Q Consensus 185 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 264 (650)
+......+.+.|++++|+..|++.+.. .|+...|..+..++.+.|++++|...++..++.. +.+..+|..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 344555666677777777777776653 4455666666677777777777777777766553 3345666667777777
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 045674 265 VGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAI 344 (650)
Q Consensus 265 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 344 (650)
.|++++|+..|......+.. +......++..+.. ..+........+... .+...+..+.. +...........-
T Consensus 207 lg~~~eA~~~~~~~~~~~~~-~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~ 279 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGF-RNEQSAQAVERLLK----KFAESKAKEILETKP-ENLPSVTFVGN-YLQSFRPKPRPAG 279 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCC-ccHHHHHHHHHHHH----HHHHHHHHHHHhcCC-CCCCCHHHHHH-HHHHccCCcchhh
Confidence 77777777666655443211 11111111111111 112222222222211 11111222222 1111111111111
Q ss_pred HHHHHHcCCCcC-HHHHHHHHHHH---HhcCCHHHHHHHHHHHHHCC-CCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 045674 345 FESMIRRGCQPN-VAIYTALIDSY---AKLGSMNEAINIFERMKYEG-VEP-DEVTYGVIISGLCKNERLEEAMQYFEFC 418 (650)
Q Consensus 345 ~~~~~~~~~~~~-~~~~~~l~~~~---~~~~~~~~A~~~~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 418 (650)
+....+. .+. ...+..+...+ ...+++++|+..|++..+.+ ..| ....+..+...+...|++++|+..+++.
T Consensus 280 ~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~ka 357 (615)
T TIGR00990 280 LEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKS 357 (615)
T ss_pred hhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2211111 111 00111111111 22356777777777766543 122 2345666666666677777777777777
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 045674 419 RANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVY 498 (650)
Q Consensus 419 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 498 (650)
.+..+. ....|..++.++...|++++|...|+++++.. +.+..++..++.++...|++++|+..|++.++..+. +..
T Consensus 358 l~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~ 434 (615)
T TIGR00990 358 IELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIF 434 (615)
T ss_pred HHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHH
Confidence 665443 45566666666777777777777777776653 555667777777777777777777777777665433 555
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHH-------HHHH
Q 045674 499 TYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPET-------AFED 571 (650)
Q Consensus 499 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~ 571 (650)
.+..++.++...|++++|+..++++++..+. +...+..++.++...|++++|++.|++++...+.... .+..
T Consensus 435 ~~~~la~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~ 513 (615)
T TIGR00990 435 SHIQLGVTQYKEGSIASSMATFRRCKKNFPE-APDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINK 513 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHH
Confidence 6666666677777777777777777664332 4566666777777777777777777777766544111 1111
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 045674 572 MITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYD 633 (650)
Q Consensus 572 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 633 (650)
.+..+...|++++|.++++++++.+ +.+..++..++.++...|++++|+++|+++++....
T Consensus 514 a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 514 ALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence 2222333567777777777776664 445556666777777777777777777777666443
No 18
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.94 E-value=1.5e-21 Score=195.29 Aligned_cols=528 Identities=16% Similarity=0.129 Sum_probs=400.3
Q ss_pred chhhhHHHHHHhhcCCCChHHHHHHHHh------ccCCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHH
Q 045674 93 DMEANLDSFCRKFLIKLSPNFVSFVLRN------HDVSKRPNVGLRLFTWAARQKKYSHNLECYISLIDCLALCGDVDRV 166 (650)
Q Consensus 93 ~~~~al~~~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 166 (650)
..+.|+..|.++. .++|..+...+.. .........++..+..+-.. .+.++.+.+.+++-|...|++..+
T Consensus 214 ~~~~a~~a~~ral--qLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~--n~~nP~~l~~LAn~fyfK~dy~~v 289 (1018)
T KOG2002|consen 214 MSEKALLAFERAL--QLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKE--NNENPVALNHLANHFYFKKDYERV 289 (1018)
T ss_pred chhhHHHHHHHHH--hcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhh--cCCCcHHHHHHHHHHhhcccHHHH
Confidence 3445555555543 3444444443211 22334566777888777665 356788999999999999999999
Q ss_pred HHHHHHHHHCCCC--CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 045674 167 RLVFNELKEKGFL--MTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMFIESSELVFKVME 244 (650)
Q Consensus 167 ~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~ 244 (650)
+.+.+.+...... .-...|-.+.++|...|++++|..+|.+..+......+..+..|...+...|+++.+...|+.+.
T Consensus 290 ~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~ 369 (1018)
T KOG2002|consen 290 WHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVL 369 (1018)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHH
Confidence 9999998875311 22345888999999999999999999998876433224556667888999999999999999998
Q ss_pred cCCCCCChhhHHHHHHHHHHcC----ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HC
Q 045674 245 NGKVGPDVVTYNTMIKGYCKVG----KTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMD----EK 316 (650)
Q Consensus 245 ~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~ 316 (650)
+.. +-+..+..+|...|...+ ..++|..++.+..+.. +.|...|..+...+....-+.. +..|.... ..
T Consensus 370 k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~ 446 (1018)
T KOG2002|consen 370 KQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESK 446 (1018)
T ss_pred HhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHc
Confidence 764 446778888888888775 5678888888888764 4477888888877765544433 66665443 45
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCc------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 045674 317 GIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRR---GCQP------NVAIYTALIDSYAKLGSMNEAINIFERMKYEG 387 (650)
Q Consensus 317 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 387 (650)
+..+.....|.+...+...|++.+|...|...... ...+ ++.+-..+...+...++.+.|.+.|..+.+.
T Consensus 447 ~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke- 525 (1018)
T KOG2002|consen 447 GKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE- 525 (1018)
T ss_pred CCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH-
Confidence 55678899999999999999999999999998765 1222 2323444888888889999999999999986
Q ss_pred CCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHH
Q 045674 388 VEPDEV-TYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKG-CPRDSYCY 465 (650)
Q Consensus 388 ~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 465 (650)
.|+-+ .|..++......+...+|..+++.....+-. +...+..++..+.+...+..|.+-|+...+.- ..+|+...
T Consensus 526 -hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~-np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Ysl 603 (1018)
T KOG2002|consen 526 -HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSS-NPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSL 603 (1018)
T ss_pred -CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccC-CcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHH
Confidence 55543 4555554455568899999999998876543 67778888889999999999999777776642 23677777
Q ss_pred HHHHHHHHH------------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 045674 466 NVLIDALAK------------CGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAA 533 (650)
Q Consensus 466 ~~l~~~~~~------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~ 533 (650)
..|++.|.+ .+..++|+++|.++++..+. |...-|.++.+++..|++.+|..+|.++.+.... ...
T Consensus 604 iaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~-~~d 681 (1018)
T KOG2002|consen 604 IALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREATSD-FED 681 (1018)
T ss_pred HHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHHhh-CCc
Confidence 888886653 34578899999999998665 8888899999999999999999999999986443 567
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 045674 534 SFRALSIGLCLSGKVARACKILDELAPKGII--PETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINAL 611 (650)
Q Consensus 534 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 611 (650)
+|..++.+|..+|++..|+++|+...+.... +..+...|+.++.+.|.+.+|.+.+..+.... +.+..+...++-..
T Consensus 682 v~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~-p~~~~v~FN~a~v~ 760 (1018)
T KOG2002|consen 682 VWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLA-PSNTSVKFNLALVL 760 (1018)
T ss_pred eeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-CccchHHhHHHHHH
Confidence 8899999999999999999999999876443 88999999999999999999999999998875 44443333332222
Q ss_pred H-------------------hcCCHHHHHHHHHHHHHCCCC
Q 045674 612 R-------------------KAGNADLAIKLMHSKIGVGYD 633 (650)
Q Consensus 612 ~-------------------~~g~~~~A~~~~~~~~~~~~~ 633 (650)
. ..+..+.|.++|.++.+.+..
T Consensus 761 kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 761 KKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 1 234567788888888887665
No 19
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.93 E-value=3.1e-21 Score=202.74 Aligned_cols=330 Identities=12% Similarity=0.072 Sum_probs=140.8
Q ss_pred HHHHhcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 045674 225 NGLVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFD 304 (650)
Q Consensus 225 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 304 (650)
..+.+.|++++|..+++.+.... +.+...+..++......|++++|.+.++++.+.. +.+...+..+...+...|+++
T Consensus 50 ~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~ 127 (656)
T PRK15174 50 IACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYA 127 (656)
T ss_pred HHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHH
Confidence 33444455555555554444332 1223333333444444455555555555554432 113334444444444555555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045674 305 SCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMK 384 (650)
Q Consensus 305 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 384 (650)
+|...+++..+.. +.+...+..++..+...|+.++|...++.+...... +...+..+ ..+...|++++|+..++++.
T Consensus 128 ~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l 204 (656)
T PRK15174 128 TVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALL 204 (656)
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHH
Confidence 5555555544432 113334444444444555555555544444433211 11122111 12444445555555444444
Q ss_pred HCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHcCCCC
Q 045674 385 YEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDE----AEELFEEMVEKGCPR 460 (650)
Q Consensus 385 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----A~~~~~~~~~~~~~~ 460 (650)
.....++...+..+...+...|++++|+..++.+....+. +...+..+..++...|++++ |...++++++.. |.
T Consensus 205 ~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~ 282 (656)
T PRK15174 205 PFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SD 282 (656)
T ss_pred hcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CC
Confidence 3321112222233333444444555555444444444332 33444444444444444443 444444444432 33
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 045674 461 DSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSI 540 (650)
Q Consensus 461 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 540 (650)
+...+..++..+.+.|++++|+..++++.+..+. +...+..+..++...|++++|+..++++.+.++. +...+..++.
T Consensus 283 ~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~-~~~~~~~~a~ 360 (656)
T PRK15174 283 NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREKGV-TSKWNRYAAA 360 (656)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-chHHHHHHHH
Confidence 4444444444444444555554444444443322 3333444444444444455544444444443221 1122222334
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCC
Q 045674 541 GLCLSGKVARACKILDELAPKGI 563 (650)
Q Consensus 541 ~~~~~g~~~~A~~~~~~~~~~~~ 563 (650)
++...|+.++|...|+++.+..|
T Consensus 361 al~~~G~~deA~~~l~~al~~~P 383 (656)
T PRK15174 361 ALLQAGKTSEAESVFEHYIQARA 383 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCh
Confidence 44444444455444444444433
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.92 E-value=4.4e-21 Score=201.58 Aligned_cols=362 Identities=13% Similarity=0.052 Sum_probs=293.3
Q ss_pred HHhcCChhHHHHHHHHHhcCC--CCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 045674 227 LVNSMFIESSELVFKVMENGK--VGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFD 304 (650)
Q Consensus 227 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 304 (650)
+.+..+++.---.|....+.. -..+..-...++..+.+.|++++|..+++........ +...+..++.+....|+++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~ 93 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPD 93 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHH
Confidence 566777776665665544321 0123334555677788899999999999999887533 4556667778888899999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045674 305 SCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMK 384 (650)
Q Consensus 305 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 384 (650)
+|...++++....+ .+...+..+...+...|++++|...++++++.. +.+...+..++..+...|++++|...++++.
T Consensus 94 ~A~~~l~~~l~~~P-~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~ 171 (656)
T PRK15174 94 AVLQVVNKLLAVNV-CQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQA 171 (656)
T ss_pred HHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 99999999998753 367788889999999999999999999999862 3356778889999999999999999999887
Q ss_pred HCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 045674 385 YEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYC 464 (650)
Q Consensus 385 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 464 (650)
..... +...+..+ ..+...|++++|...++.+.+..+..+...+..++.++...|++++|+..++++.+.. +.+...
T Consensus 172 ~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~ 248 (656)
T PRK15174 172 QEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAAL 248 (656)
T ss_pred HhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHH
Confidence 65322 22333333 3478899999999999998877554455555666788899999999999999999875 678888
Q ss_pred HHHHHHHHHHcCCHHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 045674 465 YNVLIDALAKCGKLDE----ALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSI 540 (650)
Q Consensus 465 ~~~l~~~~~~~g~~~~----A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 540 (650)
+..++..|...|++++ |+..|+++.+..+. +...+..++..+...|++++|...++++.+..+. +...+..++.
T Consensus 249 ~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~ 326 (656)
T PRK15174 249 RRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYAR 326 (656)
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 9999999999999986 89999999987654 7788999999999999999999999999987554 5667888899
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 045674 541 GLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDRE 596 (650)
Q Consensus 541 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 596 (650)
++...|++++|...++++...+|.+...+..++.++...|++++|+..|+++++..
T Consensus 327 ~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 327 ALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999888876667777889999999999999999999874
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.92 E-value=3.3e-20 Score=199.37 Aligned_cols=416 Identities=11% Similarity=0.001 Sum_probs=231.9
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhhHHHH
Q 045674 179 LMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMFIESSELVFKVMENGKVGPDVVTYNTM 258 (650)
Q Consensus 179 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 258 (650)
+.+.....-.+......|+.++|+++|.+..... +.+...+..+...+...|++++|..++++.++.. +.+...+..+
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 89 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGL 89 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 4555556666666677777777777777776532 3345556777777777777777777777766542 3345566666
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 045674 259 IKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKC 338 (650)
Q Consensus 259 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 338 (650)
+..+...|++++|+..++++.+.. +.+.. +..+..++...|+.++|+..++++.+..+. +...+..++..+...|..
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~ 166 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLS 166 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCh
Confidence 677777777777777777776653 22444 666666777777777777777777765433 444555566666666666
Q ss_pred HHHHHHHHHHHHcCCCcCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCH---H
Q 045674 339 IEGHAIFESMIRRGCQPNV------AIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERL---E 409 (650)
Q Consensus 339 ~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~---~ 409 (650)
++|...++.+.. .|+. .....++..+...+ ....+++ +
T Consensus 167 e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~------------------------------~~~~~r~~~ad 213 (765)
T PRK10049 167 APALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPT------------------------------RSEKERYAIAD 213 (765)
T ss_pred HHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccc------------------------------cChhHHHHHHH
Confidence 666666655443 1210 00111111111000 0111112 4
Q ss_pred HHHHHHHHHHHC-CCCCCHH-HH----HHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCCHHHHH
Q 045674 410 EAMQYFEFCRAN-GVAVNAM-FY----SSLIDGLGKAGRVDEAEELFEEMVEKGCP-RDSYCYNVLIDALAKCGKLDEAL 482 (650)
Q Consensus 410 ~a~~~~~~~~~~-~~~~~~~-~~----~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~ 482 (650)
+|+..++.+.+. ...|+.. .+ ...+.++...|++++|+..|+.+.+.+.+ |+. ....+...|...|++++|+
T Consensus 214 ~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~ 292 (765)
T PRK10049 214 RALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQ 292 (765)
T ss_pred HHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHH
Confidence 455555544432 1111110 00 00012233445566666666665554311 111 1112344555566666666
Q ss_pred HHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------CCC---HHHHHHHHHHHHhc
Q 045674 483 ALFKRMEDEGCDQ---TVYTYTILINGMFKEHRNEEALKLWDMMIDKGI-----------TPT---AASFRALSIGLCLS 545 (650)
Q Consensus 483 ~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----------~p~---~~~~~~l~~~~~~~ 545 (650)
..|+++.+..... .......+..++...|++++|..+++++.+..+ .|+ ...+..++..+...
T Consensus 293 ~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~ 372 (765)
T PRK10049 293 SILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYS 372 (765)
T ss_pred HHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHc
Confidence 6666555432211 122334444455556666666666665554321 122 12334555666667
Q ss_pred CCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 045674 546 GKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMH 625 (650)
Q Consensus 546 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 625 (650)
|+.++|++.++++....|.+..++..++.++...|++++|++.++++++.. |.+...+...+..+...|++++|..+++
T Consensus 373 g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~ 451 (765)
T PRK10049 373 NDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTD 451 (765)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 777777777777777666666777777777777777777777777777665 5556666666666777777777777777
Q ss_pred HHHHCCCCC
Q 045674 626 SKIGVGYDR 634 (650)
Q Consensus 626 ~~~~~~~~~ 634 (650)
++++..++.
T Consensus 452 ~ll~~~Pd~ 460 (765)
T PRK10049 452 DVVAREPQD 460 (765)
T ss_pred HHHHhCCCC
Confidence 777766653
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.92 E-value=6.4e-20 Score=197.17 Aligned_cols=432 Identities=10% Similarity=0.021 Sum_probs=308.0
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 045674 143 YSHNLECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNF 222 (650)
Q Consensus 143 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 222 (650)
.+.+.....-.+.+....|+.++|+.++.++.... +.+...+..+...+...|++++|+++|++..+.. +.+...+..
T Consensus 11 ~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~ 88 (765)
T PRK10049 11 SALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRG 88 (765)
T ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 34566667778889999999999999999998733 5667779999999999999999999999998863 345677788
Q ss_pred HHHHHHhcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 045674 223 LMNGLVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGD 302 (650)
Q Consensus 223 ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 302 (650)
+...+...|++++|...++++.+.. +.+.. +..+...+...|+.++|+..++++.+... .+...+..+..++...+.
T Consensus 89 la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~~ 165 (765)
T PRK10049 89 LILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNNRL 165 (765)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCC
Confidence 8889999999999999999998763 44566 88899999999999999999999998743 356666778888889999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCH---HHHHHH
Q 045674 303 FDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSM---NEAINI 379 (650)
Q Consensus 303 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~A~~~ 379 (650)
.++|++.++.... .|+.. .. + +...+...... .+.......+++ ++|+..
T Consensus 166 ~e~Al~~l~~~~~---~p~~~--~~-l-------~~~~~~~~~r~--------------~~~~~~~~~~r~~~ad~Al~~ 218 (765)
T PRK10049 166 SAPALGAIDDANL---TPAEK--RD-L-------EADAAAELVRL--------------SFMPTRSEKERYAIADRALAQ 218 (765)
T ss_pred hHHHHHHHHhCCC---CHHHH--HH-H-------HHHHHHHHHHh--------------hcccccChhHHHHHHHHHHHH
Confidence 9999998876654 12200 00 0 00011111100 011111222222 566666
Q ss_pred HHHHHHC-CCCCCHH-hH----HHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 045674 380 FERMKYE-GVEPDEV-TY----GVIISGLCKNERLEEAMQYFEFCRANGVA-VNAMFYSSLIDGLGKAGRVDEAEELFEE 452 (650)
Q Consensus 380 ~~~~~~~-~~~p~~~-~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 452 (650)
++.+.+. ...|+.. .+ ...+..+...|++++|+..|+.+.+.+.. |+. ....+..+|...|++++|+.+|++
T Consensus 219 ~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~ 297 (765)
T PRK10049 219 YDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTE 297 (765)
T ss_pred HHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHH
Confidence 6666543 1122211 11 11123445667778888888777766532 222 222246677778888888888887
Q ss_pred HHHcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----------CCC---HHHHHHHHHHHHhcCCHH
Q 045674 453 MVEKGCPRD----SYCYNVLIDALAKCGKLDEALALFKRMEDEGC-----------DQT---VYTYTILINGMFKEHRNE 514 (650)
Q Consensus 453 ~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~~~~~ 514 (650)
+.+.. +.+ ......+..++...|++++|...++.+....+ .|+ ...+..++..+...|+++
T Consensus 298 ~l~~~-p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~ 376 (765)
T PRK10049 298 LFYHP-ETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLP 376 (765)
T ss_pred HhhcC-CCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHH
Confidence 76643 111 23455566667778888888888887776532 123 234556777888999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 045674 515 EALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVD 594 (650)
Q Consensus 515 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 594 (650)
+|+++++++....+. +...+..++..+...|++++|++.++++....|.+...+...+..+...|++++|..+++++++
T Consensus 377 eA~~~l~~al~~~P~-n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 377 QAEMRARELAYNAPG-NQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 999999999987555 6788889999999999999999999999999999888999999999999999999999999998
Q ss_pred cCCCCCHHHHHHHHHHH
Q 045674 595 REREIPGKIRTALINAL 611 (650)
Q Consensus 595 ~~~~~~~~~~~~l~~~~ 611 (650)
.. |+......+...+
T Consensus 456 ~~--Pd~~~~~~~~~~~ 470 (765)
T PRK10049 456 RE--PQDPGVQRLARAR 470 (765)
T ss_pred hC--CCCHHHHHHHHHH
Confidence 74 4444334444443
No 23
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.91 E-value=3.9e-21 Score=193.19 Aligned_cols=299 Identities=15% Similarity=0.088 Sum_probs=191.0
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHhHHHHHHHHHhcCC
Q 045674 331 GLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPD---EVTYGVIISGLCKNER 407 (650)
Q Consensus 331 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~ 407 (650)
.+...|++++|...|+++.+.+ +.+..++..++..+...|++++|..+++.+...+..++ ...+..+...|...|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 3445566666666666666542 12344556666666666666666666666655321111 1345556666666677
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCCHHHHHH
Q 045674 408 LEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRD----SYCYNVLIDALAKCGKLDEALA 483 (650)
Q Consensus 408 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~ 483 (650)
+++|..+|+++.+..+. +..++..++.++.+.|++++|.+.++.+.+.+..+. ...+..++..+.+.|++++|..
T Consensus 123 ~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 123 LDRAEELFLQLVDEGDF-AEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHHHHcCCcc-hHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 77777777666654332 555666667777777777777777777666531111 1234456666777777777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 045674 484 LFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGI 563 (650)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 563 (650)
.|+++.+..+. +...+..++..+...|++++|.++++++.+.++.....++..++.+|...|++++|...++++.+..|
T Consensus 202 ~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p 280 (389)
T PRK11788 202 LLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYP 280 (389)
T ss_pred HHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 77777765432 45566677777777777888887777777654332345566777777788888888888888777766
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCh
Q 045674 564 IPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRK---AGNADLAIKLMHSKIGVGYDRM 635 (650)
Q Consensus 564 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~ 635 (650)
... .+..++..+.+.|++++|.++++++++. .|+...+..+...+.. .|+.++|+.++++++++++.|+
T Consensus 281 ~~~-~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 352 (389)
T PRK11788 281 GAD-LLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRK 352 (389)
T ss_pred Cch-HHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCC
Confidence 543 3477778888888888888888887765 3566566655555543 4577788888888887665543
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.91 E-value=1.6e-18 Score=182.30 Aligned_cols=443 Identities=11% Similarity=0.043 Sum_probs=258.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 045674 146 NLECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMN 225 (650)
Q Consensus 146 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 225 (650)
.+.+...-+....+.|+++.|+..|+++++.. +.+......++..+...|+.++|+..+++.... ..........+..
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~-P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ 110 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAG-PLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAAR 110 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-ccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHH
Confidence 34444555556667777777777777777653 222222226666666777777777777777621 1122333333344
Q ss_pred HHHhcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 045674 226 GLVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDS 305 (650)
Q Consensus 226 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 305 (650)
.+...|++++|.++++++.+.. +.+...+..++..|...++.++|++.++++... .|+...+..++..+...++..+
T Consensus 111 ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~ 187 (822)
T PRK14574 111 AYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYD 187 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHH
Confidence 6666677777777777777653 334555556667777777777777777777664 3444444444444444555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHH------HHHHHHH---H--hcC---
Q 045674 306 CLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIY------TALIDSY---A--KLG--- 371 (650)
Q Consensus 306 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~------~~l~~~~---~--~~~--- 371 (650)
|++.++++.+.. +.+...+..+...+.+.|-...|.++..+-... +.+....+ ..+++.- . ...
T Consensus 188 AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~ 265 (822)
T PRK14574 188 ALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFD 265 (822)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHH
Confidence 777777777764 335666666666777777766666555432211 11111000 0001000 0 011
Q ss_pred CHHHHHHHHHHHHHC-CCCCCH-----HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 045674 372 SMNEAINIFERMKYE-GVEPDE-----VTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDE 445 (650)
Q Consensus 372 ~~~~A~~~~~~~~~~-~~~p~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 445 (650)
-.+.|+.-++.+... +..|.. ....-.+.++...|++.++++.|+.+...+.+....+-..++.+|...++.++
T Consensus 266 ~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~k 345 (822)
T PRK14574 266 IADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEK 345 (822)
T ss_pred HHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHH
Confidence 134445555554431 112321 12223444566777777777777777777655455566677777777777778
Q ss_pred HHHHHHHHHHcC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-------------CCCHH-HHHHHHHH
Q 045674 446 AEELFEEMVEKG-----CPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGC-------------DQTVY-TYTILING 506 (650)
Q Consensus 446 A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------------~~~~~-~~~~l~~~ 506 (650)
|+.+++.+.... .+++......|..+|...+++++|..+++++.+..+ .||-. .+..++..
T Consensus 346 A~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~ 425 (822)
T PRK14574 346 AAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQS 425 (822)
T ss_pred HHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHH
Confidence 887777776542 122333345667777777777777777777766321 12222 22334455
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHH
Q 045674 507 MFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEAC 586 (650)
Q Consensus 507 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 586 (650)
+...|+..+|.+.++++....+. |......++..+...|.+.+|...++.+....|.+..+....+.++...|++++|.
T Consensus 426 ~~~~gdl~~Ae~~le~l~~~aP~-n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~ 504 (822)
T PRK14574 426 LVALNDLPTAQKKLEDLSSTAPA-NQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQME 504 (822)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHH
Confidence 56667777777777777665444 66666667777777777777777776666666666666666777777777777777
Q ss_pred HHHHHHHHcC
Q 045674 587 KLADGIVDRE 596 (650)
Q Consensus 587 ~~~~~~~~~~ 596 (650)
.+.+++++..
T Consensus 505 ~~~~~l~~~~ 514 (822)
T PRK14574 505 LLTDDVISRS 514 (822)
T ss_pred HHHHHHHhhC
Confidence 7777666653
No 25
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.91 E-value=8.9e-21 Score=190.59 Aligned_cols=300 Identities=18% Similarity=0.165 Sum_probs=202.0
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcC---HHHHHHHHHHHHhcCCH
Q 045674 297 CYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPN---VAIYTALIDSYAKLGSM 373 (650)
Q Consensus 297 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~ 373 (650)
+...|++++|...|+++.+.+. .+..++..++..+...|++++|..+++.+...+..++ ...+..++..|.+.|++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 3444555555555555554422 2334455555555555555555555555554321111 23455666677777777
Q ss_pred HHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHH
Q 045674 374 NEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVN----AMFYSSLIDGLGKAGRVDEAEEL 449 (650)
Q Consensus 374 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~ 449 (650)
++|..+|+++.+.. ..+..++..++..+.+.|++++|.+.++.+.+.++.+. ...+..++..+...|++++|...
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 77777777776542 23455666777777777777777777777766544322 12345567777888888888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 045674 450 FEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGIT 529 (650)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 529 (650)
++++.+.. +.+...+..++..|.+.|++++|.+.++++.+.++.....+++.++.+|...|++++|...++++.+..
T Consensus 203 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~-- 279 (389)
T PRK11788 203 LKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY-- 279 (389)
T ss_pred HHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Confidence 88888764 556677788888888889999999988888876443334567788888888999999999999888763
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHcCCCCCHH
Q 045674 530 PTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCK---TGRIKEACKLADGIVDREREIPGK 602 (650)
Q Consensus 530 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~ 602 (650)
|+...+..++..+.+.|++++|..+++++++..|.+. .+..+...++. .|+.++|+.+++++++.++.+++.
T Consensus 280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 280 PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 4555667888888899999999999998888766544 45555555543 558888999898888766566554
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.90 E-value=3e-18 Score=180.30 Aligned_cols=446 Identities=9% Similarity=-0.003 Sum_probs=332.9
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHH
Q 045674 184 AANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYC 263 (650)
Q Consensus 184 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 263 (650)
+.-.-+....+.|+++.|+..|++..+....-....+ .++..+...|+.++|+..+++..... .........++..|.
T Consensus 36 ~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~ 113 (822)
T PRK14574 36 TQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYR 113 (822)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHH
Confidence 3334444567899999999999999986322112344 77788888899999999999998311 222333344467888
Q ss_pred HcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 045674 264 KVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHA 343 (650)
Q Consensus 264 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 343 (650)
..|++++|+++|+++.+.... +...+..++..+...++.++|++.++.+.... |+...+..++..+...++..+|++
T Consensus 114 ~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL~ 190 (822)
T PRK14574 114 NEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDALQ 190 (822)
T ss_pred HcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHHHH
Confidence 999999999999999987533 56777788899999999999999999998874 344445555555555677767999
Q ss_pred HHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhH------HHHHHHH-----HhcCC---HH
Q 045674 344 IFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTY------GVIISGL-----CKNER---LE 409 (650)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~------~~l~~~~-----~~~g~---~~ 409 (650)
.++++++.. +.+...+..+..++.+.|-...|.++..+-... +.+....+ ...++.- ...++ .+
T Consensus 191 ~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d 268 (822)
T PRK14574 191 ASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIAD 268 (822)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHH
Confidence 999999984 336777788889999999999999877754321 11111111 1111100 01122 34
Q ss_pred HHHHHHHHHHHC-CCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 045674 410 EAMQYFEFCRAN-GVAVNA-----MFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALA 483 (650)
Q Consensus 410 ~a~~~~~~~~~~-~~~~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 483 (650)
.|+.-++.+... +..|.. ....-.+-++...+++.++++.++.+...+.+.-..+...++.+|...+++++|+.
T Consensus 269 ~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~ 348 (822)
T PRK14574 269 KALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAP 348 (822)
T ss_pred HHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHH
Confidence 455555555542 111221 12223456678899999999999999988765556688899999999999999999
Q ss_pred HHHHHHHcCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-------------CCCHH-HHHHHHHHHHh
Q 045674 484 LFKRMEDEGC-----DQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGI-------------TPTAA-SFRALSIGLCL 544 (650)
Q Consensus 484 ~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-------------~p~~~-~~~~l~~~~~~ 544 (650)
+|+.+..... .++......|..++...+++++|..+++++.+..+ .||-. ....++..+..
T Consensus 349 l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~ 428 (822)
T PRK14574 349 ILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVA 428 (822)
T ss_pred HHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHH
Confidence 9999976531 23444457889999999999999999999987322 22322 33456777889
Q ss_pred cCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 045674 545 SGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLM 624 (650)
Q Consensus 545 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 624 (650)
.|+..+|++.++++....|.+..+...++.++...|++.+|.+.++.+.... |.+..+....+.++...|++.+|..+.
T Consensus 429 ~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~A~~~~ 507 (822)
T PRK14574 429 LNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMALQEWHQMELLT 507 (822)
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998888775 677888889999999999999999999
Q ss_pred HHHHHCCCCChhh
Q 045674 625 HSKIGVGYDRMGS 637 (650)
Q Consensus 625 ~~~~~~~~~~~~~ 637 (650)
..+++..|+...+
T Consensus 508 ~~l~~~~Pe~~~~ 520 (822)
T PRK14574 508 DDVISRSPEDIPS 520 (822)
T ss_pred HHHHhhCCCchhH
Confidence 9999998885443
No 27
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.89 E-value=1.1e-16 Score=153.72 Aligned_cols=463 Identities=11% Similarity=0.040 Sum_probs=319.2
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH----HHCCCCCCHHHHHHHHHHHHhcC
Q 045674 156 CLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELLWVWRSM----KENGIEPSLYTYNFLMNGLVNSM 231 (650)
Q Consensus 156 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~~~~~ll~~~~~~~ 231 (650)
+|++..-++.|..++....+. ++.+..+|.+-...--.+|+.+...++..+- ...|+..+...|..=...+-..|
T Consensus 415 AlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ag 493 (913)
T KOG0495|consen 415 ALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAG 493 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcC
Confidence 344455566777777776664 4666677766666666677766666665543 34466666666666666666666
Q ss_pred ChhHHHHHHHHHhcCCCCC--ChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 045674 232 FIESSELVFKVMENGKVGP--DVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSL 309 (650)
Q Consensus 232 ~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 309 (650)
..-.+..+....+..|+.- -..+|+.-...|.+.+.++-|..+|...++.. +-+...|...+..--..|..++...+
T Consensus 494 sv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl~Al 572 (913)
T KOG0495|consen 494 SVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESLEAL 572 (913)
T ss_pred ChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHHHH
Confidence 6666666666666555432 24567777777777777777777777776652 33456666666666667777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 045674 310 YHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVE 389 (650)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 389 (650)
+++....- +-....+...+..+-..|+...|+.++..+.+.... +...|.+-+.......+++.|..+|.+.... .
T Consensus 573 lqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--s 648 (913)
T KOG0495|consen 573 LQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--S 648 (913)
T ss_pred HHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--C
Confidence 77777663 334555666666667778888888888777776333 5667777777777777788888888777654 5
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 045674 390 PDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLI 469 (650)
Q Consensus 390 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 469 (650)
|+...|.--+....-.+..++|++++++.++.-+. -...|..+.+.+.+.++++.|.+.|..-.+. +|..+..|..|.
T Consensus 649 gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~-f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLa 726 (913)
T KOG0495|consen 649 GTERVWMKSANLERYLDNVEEALRLLEEALKSFPD-FHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLA 726 (913)
T ss_pred CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCc-hHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHH
Confidence 56666666555566677778888888777776433 4566777777777788888887777776665 466677777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 045674 470 DALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVA 549 (650)
Q Consensus 470 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 549 (650)
..-.+.|++-.|..++++..-.++. +...|...+..-.+.|..+.|..+..++++.- +.+...|..-++..-+.++-.
T Consensus 727 kleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQec-p~sg~LWaEaI~le~~~~rkT 804 (913)
T KOG0495|consen 727 KLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQEC-PSSGLLWAEAIWLEPRPQRKT 804 (913)
T ss_pred HHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccchhHHHHHHhccCcccch
Confidence 7777777788888888877776655 67777777777778888888887777777652 325556666666666655544
Q ss_pred HHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045674 550 RACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIG 629 (650)
Q Consensus 550 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 629 (650)
.+.+.+.+. -.|+.++..++..++...++++|.+.|+++++.+ +.+..+|..+...+..+|.-+.-.+++++...
T Consensus 805 ks~DALkkc----e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 805 KSIDALKKC----EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHGTEEDQKEVLKKCET 879 (913)
T ss_pred HHHHHHHhc----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 444333332 3377788888888888888888999888888886 67778888888888888888888888888776
Q ss_pred CCCC
Q 045674 630 VGYD 633 (650)
Q Consensus 630 ~~~~ 633 (650)
-.|.
T Consensus 880 ~EP~ 883 (913)
T KOG0495|consen 880 AEPT 883 (913)
T ss_pred cCCC
Confidence 5544
No 28
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.89 E-value=6e-17 Score=155.43 Aligned_cols=467 Identities=12% Similarity=0.047 Sum_probs=324.9
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 045674 160 CGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMFIESSELV 239 (650)
Q Consensus 160 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~ 239 (650)
..+.+.|+.++.++.+. ++.+...|.+ |.+..-++.|..++++..+. ++.+...|.+-...--..|+.+...++
T Consensus 389 lE~~~darilL~rAvec-cp~s~dLwlA----larLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~ki 462 (913)
T KOG0495|consen 389 LEEPEDARILLERAVEC-CPQSMDLWLA----LARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKI 462 (913)
T ss_pred ccChHHHHHHHHHHHHh-ccchHHHHHH----HHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHH
Confidence 34455566666666654 3444444443 34455667777777777765 555666666666556667777777776
Q ss_pred HHHHh----cCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 045674 240 FKVME----NGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQP--DKITYMTLIQACYLEGDFDSCLSLYHEM 313 (650)
Q Consensus 240 ~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 313 (650)
+++.+ ..|+.-+...|..-...+-..|..-.+..+....+..|+.- -..||..-...|.+.+.++-|..+|...
T Consensus 463 i~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~a 542 (913)
T KOG0495|consen 463 IDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHA 542 (913)
T ss_pred HHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHH
Confidence 65543 34566666677777777777777777777777777666542 2356777777777777777777777777
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 045674 314 DEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEV 393 (650)
Q Consensus 314 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~ 393 (650)
++.. +-+...|...+..--..|..++-..+|++++.. ++-....|...+..+-..|+...|..++.++.+.... +..
T Consensus 543 lqvf-p~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-see 619 (913)
T KOG0495|consen 543 LQVF-PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEE 619 (913)
T ss_pred Hhhc-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHH
Confidence 7652 335556666666656667777777777777776 2334455555566666778888888888877765322 456
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 045674 394 TYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALA 473 (650)
Q Consensus 394 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 473 (650)
.|...+........++.|..+|.+.... .++..+|.--+....-.++.++|++++++.++. ++.-...|..+++.+.
T Consensus 620 iwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e 696 (913)
T KOG0495|consen 620 IWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEE 696 (913)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHH
Confidence 6777777777778888888888777664 345566666666666677788888888887776 4556677778888888
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 045674 474 KCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACK 553 (650)
Q Consensus 474 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 553 (650)
+.++++.|.+.|..-.+. ++.....|..|...--+.|..-.|..++++..-.++. +...|...++.-.+.|+.++|..
T Consensus 697 ~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~ 774 (913)
T KOG0495|consen 697 QMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAEL 774 (913)
T ss_pred HHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHH
Confidence 888888888777766554 3334455555555555677888888888888776665 67777777888888888888888
Q ss_pred HHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 045674 554 ILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYD 633 (650)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 633 (650)
++.++++..|.+...|..-+...-+.++-......+++. ..|+.+...++..+....++++|++.|+++.+.+++
T Consensus 775 lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d 849 (913)
T KOG0495|consen 775 LMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPD 849 (913)
T ss_pred HHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence 888888777777777777777766666655555555443 567888888999999999999999999999999999
Q ss_pred Chhhhhhhhccc
Q 045674 634 RMGSIKRRVKFR 645 (650)
Q Consensus 634 ~~~~~~~~~~~~ 645 (650)
.....-.+-+|+
T Consensus 850 ~GD~wa~fykfe 861 (913)
T KOG0495|consen 850 NGDAWAWFYKFE 861 (913)
T ss_pred cchHHHHHHHHH
Confidence 776666665554
No 29
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=2e-16 Score=146.25 Aligned_cols=470 Identities=12% Similarity=0.088 Sum_probs=360.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 045674 147 LECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNG 226 (650)
Q Consensus 147 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 226 (650)
...|...+.-=..++++..|+.+|++++..+ .-+...|...+..-.++..+..|..+|++.... ++--...|.-.+..
T Consensus 73 ~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~-lPRVdqlWyKY~ym 150 (677)
T KOG1915|consen 73 MQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI-LPRVDQLWYKYIYM 150 (677)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh-cchHHHHHHHHHHH
Confidence 3345555555567788899999999999876 557888999999999999999999999999885 23233345555555
Q ss_pred HHhcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 045674 227 LVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSC 306 (650)
Q Consensus 227 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 306 (650)
--..|++..|.++|++-.+. .|+..+|++.|+.-.+.+.++.|..++++..- +.|++.+|.-...--.+.|+...+
T Consensus 151 EE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~a 226 (677)
T KOG1915|consen 151 EEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALA 226 (677)
T ss_pred HHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHH
Confidence 56789999999999998866 89999999999999999999999999999986 468999999999988999999999
Q ss_pred HHHHHHHHHC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcC--HHHHHHHHHHHHhcCCHHHHHHH---
Q 045674 307 LSLYHEMDEK-G-IEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPN--VAIYTALIDSYAKLGSMNEAINI--- 379 (650)
Q Consensus 307 ~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~--- 379 (650)
..+|+...+. | -..+...+.+.+..-.++..++.|.-+|.-.++. ++.+ ...|..+...--+-|+.....+.
T Consensus 227 R~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~ 305 (677)
T KOG1915|consen 227 RSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVG 305 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhh
Confidence 9999988764 1 1123445666666667788899999999998886 2222 33444444433344654433322
Q ss_pred -----HHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHH-----HH---HHHcCCHHH
Q 045674 380 -----FERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAM-FYSSLI-----DG---LGKAGRVDE 445 (650)
Q Consensus 380 -----~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~-----~~---~~~~~~~~~ 445 (650)
|+.+...+ .-|-.+|-..++.-...|+.+...++|++++..-++.+.. .|...| .+ -....+++.
T Consensus 306 KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~er 384 (677)
T KOG1915|consen 306 KRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVER 384 (677)
T ss_pred hhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 33444432 3367788888888888999999999999998874443321 122111 11 234688999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHH----HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 045674 446 AEELFEEMVEKGCPRDSYCYNV----LIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWD 521 (650)
Q Consensus 446 A~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 521 (650)
+.++++..++. +|....++.- .+....++.++..|.+++...+.. .|...+|...|..=.+.+.++....+++
T Consensus 385 tr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~--cPK~KlFk~YIelElqL~efDRcRkLYE 461 (677)
T KOG1915|consen 385 TRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGK--CPKDKLFKGYIELELQLREFDRCRKLYE 461 (677)
T ss_pred HHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhcc--CCchhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999985 4555555544 444455788999999999988754 6788889888888889999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 045674 522 MMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGII--PETAFEDMITCLCKTGRIKEACKLADGIVDREREI 599 (650)
Q Consensus 522 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 599 (650)
+.++.++. +..+|...+..-...|+.+.|..+|+-++++... +...|...+..-...|.++.|..+|+++++.. +
T Consensus 462 kfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt--~ 538 (677)
T KOG1915|consen 462 KFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT--Q 538 (677)
T ss_pred HHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc--c
Confidence 99998777 8888988888888899999999999999987543 56778889999999999999999999999874 6
Q ss_pred CHHHHHHHHHHHH-----hcC-----------CHHHHHHHHHHHHHC
Q 045674 600 PGKIRTALINALR-----KAG-----------NADLAIKLMHSKIGV 630 (650)
Q Consensus 600 ~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~~~~~ 630 (650)
...+|..++.--. +.| +...|+.+|+++...
T Consensus 539 h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~ 585 (677)
T KOG1915|consen 539 HVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTY 585 (677)
T ss_pred cchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHH
Confidence 6668887776544 344 667888888887653
No 30
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.86 E-value=1.1e-15 Score=152.90 Aligned_cols=537 Identities=13% Similarity=0.080 Sum_probs=359.2
Q ss_pred CCCchhhhHHHHHHhhcCC-CChHHHHHHHHhccCCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 045674 90 GSSDMEANLDSFCRKFLIK-LSPNFVSFVLRNHDVSKRPNVGLRLFTWAARQKKYSHNLECYISLIDCLALCGDVDRVRL 168 (650)
Q Consensus 90 ~~~~~~~al~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 168 (650)
.+|+.+.|...+.+..... ..+.....+-..+...|+.+.++.++-.+... .+.+.+.|..+.....+.|.+++|.-
T Consensus 151 arg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL--~p~d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL--NPKDYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred HhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHhcccHHHHHH
Confidence 5699999999888876433 44455556667788899999999988877665 45677899999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHH----HHHHHHhcCChhHHHHHHHHHh
Q 045674 169 VFNELKEKGFLMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNF----LMNGLVNSMFIESSELVFKVME 244 (650)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~----ll~~~~~~~~~~~A~~~~~~~~ 244 (650)
.|.++++.. |++....-.-+..|-+.|+...|...|.++.....+.|..-+.. .+..+...++-+.|.+.++...
T Consensus 229 cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~ 307 (895)
T KOG2076|consen 229 CYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGAL 307 (895)
T ss_pred HHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999986 66777777778889999999999999999998743223222222 3455666777788888888776
Q ss_pred cC-CCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCC---------------------------CCCHHHHHHHHHH
Q 045674 245 NG-KVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNV---------------------------QPDKITYMTLIQA 296 (650)
Q Consensus 245 ~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---------------------------~~~~~~~~~l~~~ 296 (650)
.. +-..+...+++++..|.+...++.|......+..... .++... .-+.-+
T Consensus 308 s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~ic 386 (895)
T KOG2076|consen 308 SKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMIC 386 (895)
T ss_pred hhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhh
Confidence 52 2234566788999999999999999888877765111 112222 112223
Q ss_pred HHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHH
Q 045674 297 CYLEGDFDSCLSLYHEMDEKG--IEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMN 374 (650)
Q Consensus 297 ~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 374 (650)
+......+....+...+.+.+ +.-+...|.-+..++...|++.+|..+|..+......-+...|..++.+|...|.++
T Consensus 387 L~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e 466 (895)
T KOG2076|consen 387 LVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYE 466 (895)
T ss_pred hhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHH
Confidence 333444444444444444444 344566788888888888888888888888887755556778888888888888888
Q ss_pred HHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHH--------CCCCCCHHHHHHHHHHHHHcCCHHH
Q 045674 375 EAINIFERMKYEGVEPD-EVTYGVIISGLCKNERLEEAMQYFEFCRA--------NGVAVNAMFYSSLIDGLGKAGRVDE 445 (650)
Q Consensus 375 ~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~~~~~~ 445 (650)
.|++.|+++... .|+ ...-..|...+.+.|+.++|.+.+..+.. ....++..........+.+.|+.++
T Consensus 467 ~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~ 544 (895)
T KOG2076|consen 467 EAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREE 544 (895)
T ss_pred HHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHH
Confidence 888888888765 343 34555666677888888888888877542 2233344444444555566666555
Q ss_pred HHHHHHHHHHcC-----C--------------------------------------------C-C-----------CH--
Q 045674 446 AEELFEEMVEKG-----C--------------------------------------------P-R-----------DS-- 462 (650)
Q Consensus 446 A~~~~~~~~~~~-----~--------------------------------------------~-~-----------~~-- 462 (650)
-+.+...|+... + . + +.
T Consensus 545 fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsidd 624 (895)
T KOG2076|consen 545 FINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDD 624 (895)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHH
Confidence 443333332100 0 0 0 00
Q ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHH---H-HHHHHHHHHhcCCHHHHHHHHHHHHHC-CC--CCC-
Q 045674 463 --YCYNVLIDALAKCGKLDEALALFKRMEDEGCD-QTVY---T-YTILINGMFKEHRNEEALKLWDMMIDK-GI--TPT- 531 (650)
Q Consensus 463 --~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~---~-~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~--~p~- 531 (650)
..+..++.++++.+++++|+.+...+...... .+.. . -...+.+.+..+++..|...++.|+.. +. .|.
T Consensus 625 wfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q 704 (895)
T KOG2076|consen 625 WFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQ 704 (895)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHH
Confidence 12245677888889999998888877654221 1222 2 233445556788888888888777743 11 111
Q ss_pred HHHHH-----------------------------------HHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Q 045674 532 AASFR-----------------------------------ALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCL 576 (650)
Q Consensus 532 ~~~~~-----------------------------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 576 (650)
...|+ ..+..+...+.+.-|+..+-++....|+++-+-.+++.++
T Consensus 705 ~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglaf 784 (895)
T KOG2076|consen 705 LNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAF 784 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 11111 1112233457788899999998888888666555555554
Q ss_pred HH----------cCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 045674 577 CK----------TGRIKEACKLADGIVDRERE-IPGKIRTALINALRKAGNADLAIKLMHSKIGVGY 632 (650)
Q Consensus 577 ~~----------~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 632 (650)
.. +-..-++..++.+..+.... ...+++..++.+|...|-..-|..+|+++++..+
T Consensus 785 ih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p 851 (895)
T KOG2076|consen 785 IHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSP 851 (895)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCc
Confidence 32 12345566677666655311 2567888999999999999999999999999854
No 31
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.86 E-value=7.1e-16 Score=154.14 Aligned_cols=509 Identities=11% Similarity=0.061 Sum_probs=350.5
Q ss_pred CCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 045674 124 SKRPNVGLRLFTWAARQKKYSHNLECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELLW 203 (650)
Q Consensus 124 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 203 (650)
.|+.++|..++.-++++ .+....+|..|+.+|-..|+.+++...+-.+.... +.|...|..+.....+.|.+++|.-
T Consensus 152 rg~~eeA~~i~~EvIkq--dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQ--DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred hCCHHHHHHHHHHHHHh--CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHH
Confidence 49999999999999998 46788899999999999999999999888777765 6788999999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhh----HHHHHHHHHHcCChhHHHHHHHHHH
Q 045674 204 VWRSMKENGIEPSLYTYNFLMNGLVNSMFIESSELVFKVMENGKVGPDVVT----YNTMIKGYCKVGKTQKAMEKFRAME 279 (650)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~g~~~~A~~~~~~~~ 279 (650)
+|.+.++.. +++...+---...|-+.|+...|...|.++.....+.|..- .-.+++.+...++-+.|.+.++...
T Consensus 229 cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~ 307 (895)
T KOG2076|consen 229 CYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGAL 307 (895)
T ss_pred HHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999974 34555555566778899999999999999987643223332 2334566777788899999998877
Q ss_pred hCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---------------------------CCCHHHHHHHHHH
Q 045674 280 ARN-VQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGI---------------------------EIPSHAYNLVIGG 331 (650)
Q Consensus 280 ~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------------------------~~~~~~~~~l~~~ 331 (650)
..+ -..+...++.++..+.+...++.+......+..... .++..+ ..+.-+
T Consensus 308 s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~ic 386 (895)
T KOG2076|consen 308 SKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMIC 386 (895)
T ss_pred hhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhh
Confidence 632 233567788899999999999999998887776211 112222 123334
Q ss_pred HHhcCChHHHHHHHHHHHHcCC--CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHH
Q 045674 332 LCKVGKCIEGHAIFESMIRRGC--QPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLE 409 (650)
Q Consensus 332 ~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 409 (650)
+......+....+.....+... .-+...|.-+..+|...|++.+|+.+|..+......-+...|-.+..+|...|.++
T Consensus 387 L~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e 466 (895)
T KOG2076|consen 387 LVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYE 466 (895)
T ss_pred hhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHH
Confidence 4444444444455555555543 33466788899999999999999999999998755556779999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------cCCCCCHHHHHHHHHHHHHcCCHHHH
Q 045674 410 EAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVE--------KGCPRDSYCYNVLIDALAKCGKLDEA 481 (650)
Q Consensus 410 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~g~~~~A 481 (650)
+|.+.|+.++...+. +...-..|...+.+.|+.++|.+++..+.. .+..|+..........+.+.|+.++=
T Consensus 467 ~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~f 545 (895)
T KOG2076|consen 467 EAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEF 545 (895)
T ss_pred HHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHH
Confidence 999999999988665 666677788999999999999999998542 23455566666677778888887765
Q ss_pred HHHHHHHHHcC-----CCC--------------------------------------------------------CH---
Q 045674 482 LALFKRMEDEG-----CDQ--------------------------------------------------------TV--- 497 (650)
Q Consensus 482 ~~~~~~~~~~~-----~~~--------------------------------------------------------~~--- 497 (650)
+.+...|.... +-| +.
T Consensus 546 i~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddw 625 (895)
T KOG2076|consen 546 INTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDW 625 (895)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHH
Confidence 44443332210 000 00
Q ss_pred -HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHH---HH-HHHHHHHHhcCCHHHHHHHHHHHhhC-----CCCcH
Q 045674 498 -YTYTILINGMFKEHRNEEALKLWDMMIDKGIT-PTAA---SF-RALSIGLCLSGKVARACKILDELAPK-----GIIPE 566 (650)
Q Consensus 498 -~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-p~~~---~~-~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~ 566 (650)
..+..++.++++.+++++|+.+...+.....- -+.. .+ ...+.+.+..+++..|..+++.++.. .+--.
T Consensus 626 fel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~ 705 (895)
T KOG2076|consen 626 FELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQL 705 (895)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 11233445556667777777766666643211 1111 12 22233445667777777777776655 22233
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-Chhhh
Q 045674 567 TAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYD-RMGSI 638 (650)
Q Consensus 567 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~ 638 (650)
..|+.......+.|+-.-=.+++..+.......++......+.-....+.+.-|+..+-++....++ |...+
T Consensus 706 ~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl 778 (895)
T KOG2076|consen 706 NLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINL 778 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHH
Confidence 4444444444455544333444444443331122333344455566778888888888888888777 54443
No 32
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.85 E-value=3.1e-17 Score=150.66 Aligned_cols=472 Identities=12% Similarity=0.040 Sum_probs=260.3
Q ss_pred CCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHcCCCH
Q 045674 123 VSKRPNVGLRLFTWAARQKKYSHNLECYISLIDCLALCGDVDRVRLVFNELKEKGFLM----TVSAANSLIKSFGGLGMV 198 (650)
Q Consensus 123 ~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~ 198 (650)
......+|+..++-..+..-|+.....-..+++++.+.++|..|++++.-.+..-... -..+.+.+...+.+.|++
T Consensus 213 ~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy 292 (840)
T KOG2003|consen 213 ANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQY 292 (840)
T ss_pred hhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccc
Confidence 3344555555555554444444444344445666666666666666666555431111 122344444556666666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCC------------ChhhHHHHH-----HH
Q 045674 199 EELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMFIESSELVFKVMENGKVGP------------DVVTYNTMI-----KG 261 (650)
Q Consensus 199 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~------------~~~~~~~l~-----~~ 261 (650)
+.|+..|+.+.+. .|+..+-..|+-++..-|+.++..+.|.+|+.....+ +....+.-+ +-
T Consensus 293 ~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~ 370 (840)
T KOG2003|consen 293 DDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKN 370 (840)
T ss_pred hhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHH
Confidence 6666666666553 4555555555555556666666666666665432111 111111111 11
Q ss_pred HHHcCC--hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 045674 262 YCKVGK--TQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCI 339 (650)
Q Consensus 262 ~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 339 (650)
+-+.+. -++++-.-.++..--+.|+-. .| .+=+++.++.-... +.-...-..-..-+.+.|+++
T Consensus 371 ~ek~~ka~aek~i~ta~kiiapvi~~~fa-----------~g-~dwcle~lk~s~~~--~la~dlei~ka~~~lk~~d~~ 436 (840)
T KOG2003|consen 371 MEKENKADAEKAIITAAKIIAPVIAPDFA-----------AG-CDWCLESLKASQHA--ELAIDLEINKAGELLKNGDIE 436 (840)
T ss_pred HHHhhhhhHHHHHHHHHHHhccccccchh-----------cc-cHHHHHHHHHhhhh--hhhhhhhhhHHHHHHhccCHH
Confidence 111110 111111111111100111100 00 01111111111100 000011111233466788888
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 045674 340 EGHAIFESMIRRGCQPNVAIYTALIDSYAK--LGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEF 417 (650)
Q Consensus 340 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 417 (650)
.|++++.-+.+...+.....-+.|...+.- ..++..|..+-+...... .-+......-.......|++++|.+.|++
T Consensus 437 ~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~yke 515 (840)
T KOG2003|consen 437 GAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKE 515 (840)
T ss_pred HHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHH
Confidence 888887777665332222223333322222 335667766666555321 11222222223334456788888888888
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 045674 418 CRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTV 497 (650)
Q Consensus 418 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 497 (650)
.+..+-. .......+.-.+...|++++|++.|-.+... ...+..++..+...|....+..+|++++.+.... ++.|+
T Consensus 516 al~ndas-c~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp 592 (840)
T KOG2003|consen 516 ALNNDAS-CTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDP 592 (840)
T ss_pred HHcCchH-HHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCH
Confidence 7766433 2233333445567778888888888776554 2456777778888888888888888888777665 44577
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Q 045674 498 YTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLC 577 (650)
Q Consensus 498 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 577 (650)
..+..|...|-+.|+-..|.+++-.--+. +..+..+...|+..|....-+++|+.+|+++.-..|.-...-..++.|+.
T Consensus 593 ~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~r 671 (840)
T KOG2003|consen 593 AILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFR 671 (840)
T ss_pred HHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 77888888888888888888776655544 34477777778777777778888888888877655544444445667777
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 045674 578 KTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGN 616 (650)
Q Consensus 578 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 616 (650)
+.|++++|.++|+...++ +|.|...+..|+..+...|-
T Consensus 672 rsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 672 RSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred hcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 888888888888887765 47777777777777766663
No 33
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.83 E-value=3.7e-16 Score=143.67 Aligned_cols=481 Identities=12% Similarity=0.058 Sum_probs=305.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHH----HH
Q 045674 146 NLECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSA-ANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLY----TY 220 (650)
Q Consensus 146 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~ 220 (650)
+..+...++.-|.......+|+..++-+.+...-|+... -..+...+.+...+.+|+++|+.....-...+-. ..
T Consensus 200 tfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil 279 (840)
T KOG2003|consen 200 TFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKIL 279 (840)
T ss_pred hHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHH
Confidence 344555667777777778888888888776644444332 2335566777888888888888777652222222 33
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHH--------HH
Q 045674 221 NFLMNGLVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITY--------MT 292 (650)
Q Consensus 221 ~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--------~~ 292 (650)
+.+...+++.|+++.|+..|+...+. .|+..+-..|+-++..-|+.++..+.|.+|...-..+|..-| ..
T Consensus 280 ~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ 357 (840)
T KOG2003|consen 280 NNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDN 357 (840)
T ss_pred hhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchH
Confidence 34444567888888888888887765 567666555555666678888888888888754222222111 12
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CcCHHHHHHHHHH
Q 045674 293 LIQACYLEGDFDSCLSLYHEMDEKGIEIPSH----AYNLVIGGLCKVGKCIEGHAIFESMIRRGC--QPNVAIYTALIDS 366 (650)
Q Consensus 293 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~ 366 (650)
|+.-..+.. .++.|.+.+-. +.. +-..++. -+-.-++....++.-+.++... +.-...-..-...
T Consensus 358 ll~eai~nd-------~lk~~ek~~ka-~aek~i~ta~kiia-pvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~ 428 (840)
T KOG2003|consen 358 LLNEAIKND-------HLKNMEKENKA-DAEKAIITAAKIIA-PVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGE 428 (840)
T ss_pred HHHHHHhhH-------HHHHHHHhhhh-hHHHHHHHHHHHhc-cccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHH
Confidence 222111111 11111111000 000 0000000 0000111111111111111100 0000000112345
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHH-HHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 045674 367 YAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISG-LCK-NERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVD 444 (650)
Q Consensus 367 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 444 (650)
|.+.|+++.|+++++-+.+..-+.....-+.+-.. |.+ ..++..|.+.-+.....+ ..+......-.+.....|+++
T Consensus 429 ~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~d 507 (840)
T KOG2003|consen 429 LLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLD 507 (840)
T ss_pred HHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHH
Confidence 78999999999999988765322222222222222 222 345677777666655442 124444444445556689999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045674 445 EAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMI 524 (650)
Q Consensus 445 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 524 (650)
+|.+.+++.+..+ ..-...+..+...+...|++++|++.|-++... ...+...+..+...|-...+...|++++.++.
T Consensus 508 ka~~~ykeal~nd-asc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~ 585 (840)
T KOG2003|consen 508 KAAEFYKEALNND-ASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQAN 585 (840)
T ss_pred HHHHHHHHHHcCc-hHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc
Confidence 9999999998864 223344555666788999999999999887653 22378888888999999999999999998887
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 045674 525 DKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIR 604 (650)
Q Consensus 525 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 604 (650)
.. +..|+.++..|+..|-+.|+-.+|.+.+-.-....|.+.++..-|+.-|....-+++|+.+|+++.- +.|+..-|
T Consensus 586 sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kw 662 (840)
T KOG2003|consen 586 SL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKW 662 (840)
T ss_pred cc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHH
Confidence 76 4558889999999999999999999998888888777999999999999999999999999999875 47888888
Q ss_pred HHHHH-HHHhcCCHHHHHHHHHHHHHCCCCChhhhhhhhc
Q 045674 605 TALIN-ALRKAGNADLAIKLMHSKIGVGYDRMGSIKRRVK 643 (650)
Q Consensus 605 ~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 643 (650)
..++. ++++.|+|.+|..+|+....+=++.-.-++-+||
T Consensus 663 qlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvr 702 (840)
T KOG2003|consen 663 QLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVR 702 (840)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 76555 4578999999999999999887776555555554
No 34
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.82 E-value=3e-15 Score=136.81 Aligned_cols=323 Identities=17% Similarity=0.251 Sum_probs=239.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC--CCHHHH-HHHHHHHHHCCCCCCHHHHHHHHHHH
Q 045674 151 ISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGL--GMVEEL-LWVWRSMKENGIEPSLYTYNFLMNGL 227 (650)
Q Consensus 151 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a-~~~~~~~~~~~~~~~~~~~~~ll~~~ 227 (650)
+.++. +...|++.++.-+|++|...|++.+...-..|.+..+-. .++--| .+.|-.|...|-. +..+|
T Consensus 120 ~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sW------- 190 (625)
T KOG4422|consen 120 NNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSW------- 190 (625)
T ss_pred hHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-ccccc-------
Confidence 33443 356789999999999999999888888877776654333 332211 2333344444322 22222
Q ss_pred HhcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 045674 228 VNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCL 307 (650)
Q Consensus 228 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 307 (650)
+.|.+ |.-+|+.. +....++.+||.++|+--..+.|.+++++..+...+.+..+||.+|.+-.-. ...
T Consensus 191 -K~G~v--AdL~~E~~-----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K 258 (625)
T KOG4422|consen 191 -KSGAV--ADLLFETL-----PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGK 258 (625)
T ss_pred -ccccH--HHHHHhhc-----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccH
Confidence 34443 33444433 4567899999999999999999999999998877788999999998765432 237
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH----HHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHH-HHHHHHH
Q 045674 308 SLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEG----HAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNE-AINIFER 382 (650)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-A~~~~~~ 382 (650)
+++.+|....+.||..|+|.++.+..+.|+++.| .+++.+|.+.|+.|...+|..+|..+++.++..+ +..++.+
T Consensus 259 ~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~d 338 (625)
T KOG4422|consen 259 KLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWIND 338 (625)
T ss_pred HHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHH
Confidence 8999999999999999999999999999988765 5678888899999999999999999999888754 4555555
Q ss_pred HHH----CCCCC----CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCC---CHHHHHHHHHHHHHcCCHHHHH
Q 045674 383 MKY----EGVEP----DEVTYGVIISGLCKNERLEEAMQYFEFCRANG----VAV---NAMFYSSLIDGLGKAGRVDEAE 447 (650)
Q Consensus 383 ~~~----~~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~---~~~~~~~l~~~~~~~~~~~~A~ 447 (650)
+.. +.++| |...|...+..|.+..+.+-|.++..-+.... +.+ ....|..+..+.|+....+.-.
T Consensus 339 I~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~ 418 (625)
T KOG4422|consen 339 IQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTL 418 (625)
T ss_pred HHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 432 23333 45567788888889999988888877654331 111 2234566778888889999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 045674 448 ELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCD 494 (650)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 494 (650)
..|+.|+-.-+.|+..+...++++..-.|.++-.-+++..+...|..
T Consensus 419 ~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght 465 (625)
T KOG4422|consen 419 KWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHT 465 (625)
T ss_pred HHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhh
Confidence 99999998877788888888999888899999888888888876644
No 35
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=4e-14 Score=131.24 Aligned_cols=444 Identities=11% Similarity=0.045 Sum_probs=344.4
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhhHHHH
Q 045674 179 LMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMFIESSELVFKVMENGKVGPDVVTYNTM 258 (650)
Q Consensus 179 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 258 (650)
..+...|...+..-..++++..|..+|++.+..+ ..+...|.-.+..-.+...+..|..++++....- +.-...|--.
T Consensus 70 R~~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l-PRVdqlWyKY 147 (677)
T KOG1915|consen 70 RLNMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL-PRVDQLWYKY 147 (677)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc-chHHHHHHHH
Confidence 3466677777777778899999999999999875 3477778888888889999999999999998642 2223456666
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 045674 259 IKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKC 338 (650)
Q Consensus 259 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 338 (650)
+..--..|+...|.++|++-.+. .|+...|++.+..-.+-+..+.|..+|+..+-. .|++..|...+..-.+.|..
T Consensus 148 ~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~ 223 (677)
T KOG1915|consen 148 IYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNV 223 (677)
T ss_pred HHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcH
Confidence 66666779999999999998874 899999999999999999999999999999875 47899999999999999999
Q ss_pred HHHHHHHHHHHHc-CC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHhHHHHHHHHHhcCCHHHHHH
Q 045674 339 IEGHAIFESMIRR-GC-QPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPD---EVTYGVIISGLCKNERLEEAMQ 413 (650)
Q Consensus 339 ~~a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~a~~ 413 (650)
..+..+|+.+++. |- .-+...+.+++.--.++..++.|.-+|+-..+. -|. ...|......--+-|+.....+
T Consensus 224 ~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~--~pk~raeeL~k~~~~fEKqfGd~~gIEd 301 (677)
T KOG1915|consen 224 ALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH--IPKGRAEELYKKYTAFEKQFGDKEGIED 301 (677)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHHhcchhhhHH
Confidence 9999999999875 21 112334555555556778899999999888765 332 3345555544445566544444
Q ss_pred H--------HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHH--------HHHHHc
Q 045674 414 Y--------FEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSY--CYNVLI--------DALAKC 475 (650)
Q Consensus 414 ~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~l~--------~~~~~~ 475 (650)
. ++.+.+.++- |-.+|.-.+..-...|+.+...++|+.++.. +||-.. .|...+ -.-...
T Consensus 302 ~Iv~KRk~qYE~~v~~np~-nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ 379 (677)
T KOG1915|consen 302 AIVGKRKFQYEKEVSKNPY-NYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEA 379 (677)
T ss_pred HHhhhhhhHHHHHHHhCCC-CchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3 3445555443 7788888899888999999999999999987 455321 121111 111246
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHH----HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 045674 476 GKLDEALALFKRMEDEGCDQTVYTYTILI----NGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARA 551 (650)
Q Consensus 476 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 551 (650)
.+.+.+.++++..++. ++....||..+- .--.++.+...|.+++..++. .-|-..++...+..-.+.++++..
T Consensus 380 ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRc 456 (677)
T KOG1915|consen 380 EDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRC 456 (677)
T ss_pred hhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHH
Confidence 7899999999999885 333445554433 333478899999999998874 567888999999999999999999
Q ss_pred HHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045674 552 CKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDRERE-IPGKIRTALINALRKAGNADLAIKLMHSKIGV 630 (650)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 630 (650)
.++|++.++.+|.+..+|...+..-...|+.+.|..+|+-++....- .....|...++.-...|.+++|+.+|+++++.
T Consensus 457 RkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 457 RKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999875321 23457788888888999999999999999997
Q ss_pred CCCCh
Q 045674 631 GYDRM 635 (650)
Q Consensus 631 ~~~~~ 635 (650)
...-.
T Consensus 537 t~h~k 541 (677)
T KOG1915|consen 537 TQHVK 541 (677)
T ss_pred cccch
Confidence 65533
No 36
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.80 E-value=1.4e-14 Score=132.52 Aligned_cols=434 Identities=17% Similarity=0.205 Sum_probs=313.3
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCChhH-HHHHHHHHhcCCCCCChhhHHHH
Q 045674 182 VSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNG--LVNSMFIES-SELVFKVMENGKVGPDVVTYNTM 258 (650)
Q Consensus 182 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~~~~~~-A~~~~~~~~~~~~~~~~~~~~~l 258 (650)
+.+=+.|+.. ...|.+.++.-+|++|.+.|.+.+...-..|+.. |....+.-- -++.|-.|.+.| ..+..+|
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--- 190 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc---
Confidence 3334444443 4578999999999999999988887777766654 334443332 234455555544 3344454
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 045674 259 IKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKC 338 (650)
Q Consensus 259 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 338 (650)
+.|...+ ++-+.. +-+..++..+|.++|+--..+.|.++|++........+..+||.+|.+-.-.
T Consensus 191 -----K~G~vAd---L~~E~~----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~--- 255 (625)
T KOG4422|consen 191 -----KSGAVAD---LLFETL----PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS--- 255 (625)
T ss_pred -----ccccHHH---HHHhhc----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh---
Confidence 3343332 333332 3366899999999999999999999999999888888999999998765433
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHH-HHH
Q 045674 339 IEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNE----AINIFERMKYEGVEPDEVTYGVIISGLCKNERLEE-AMQ 413 (650)
Q Consensus 339 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-a~~ 413 (650)
...+++.+|......||..++|+++.+..+.|+++. |.+++.+|++.|+.|...+|..++..+++.++..+ +..
T Consensus 256 -~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~ 334 (625)
T KOG4422|consen 256 -VGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASS 334 (625)
T ss_pred -ccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHH
Confidence 238899999999999999999999999999998765 56778889999999999999999999999887754 445
Q ss_pred HHHHHHH----CCCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCCC---HHHHHHHHHHHHHcCCH
Q 045674 414 YFEFCRA----NGVA----VNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKG----CPRD---SYCYNVLIDALAKCGKL 478 (650)
Q Consensus 414 ~~~~~~~----~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~g~~ 478 (650)
++.++.. ...+ .+...|...+..|.+..+.+-|.++..-+.... ++++ ..-|..+....|+....
T Consensus 335 ~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~ 414 (625)
T KOG4422|consen 335 WINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESI 414 (625)
T ss_pred HHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 5554433 2222 255677778888889999999998876655421 2233 23356677788888999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-C--------HH
Q 045674 479 DEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSG-K--------VA 549 (650)
Q Consensus 479 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~--------~~ 549 (650)
+.-...|+.|.-.-.-|+..+...++.+..-.|+++-..++|..++..|..........+...+++.. . +.
T Consensus 415 ~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~ 494 (625)
T KOG4422|consen 415 DVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQ 494 (625)
T ss_pred HHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHH
Confidence 99999999998877778888889999999899999999999999998775555555555555555443 1 11
Q ss_pred H-----HHHHHHHHhh-----CCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHhc
Q 045674 550 R-----ACKILDELAP-----KGII-PETAFEDMITCLCKTGRIKEACKLADGIVDRER----EIPGKIRTALINALRKA 614 (650)
Q Consensus 550 ~-----A~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~ 614 (650)
. |..+++.... ...+ ++...+.++..+.+.|++++|.+++.-..+.+- .|...+..-+.+.-...
T Consensus 495 ~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~ 574 (625)
T KOG4422|consen 495 VAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVS 574 (625)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhc
Confidence 1 1122221111 1122 678889999999999999999999998876542 23344455677777888
Q ss_pred CCHHHHHHHHHHHHHCCCCChh
Q 045674 615 GNADLAIKLMHSKIGVGYDRMG 636 (650)
Q Consensus 615 g~~~~A~~~~~~~~~~~~~~~~ 636 (650)
+....|+..++-+...+...-.
T Consensus 575 ~spsqA~~~lQ~a~~~n~~~~E 596 (625)
T KOG4422|consen 575 NSPSQAIEVLQLASAFNLPICE 596 (625)
T ss_pred CCHHHHHHHHHHHHHcCchhhh
Confidence 9999999999999887665433
No 37
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=2e-15 Score=140.45 Aligned_cols=225 Identities=18% Similarity=0.167 Sum_probs=185.0
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 045674 367 YAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEA 446 (650)
Q Consensus 367 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 446 (650)
+.-.|+...|...|+..+.....++. .|..+..+|...++.++.+..|......++. +..+|..-.+++.-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHH
Confidence 44578888999999998876444332 2666777799999999999999999998877 777888888888889999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045674 447 EELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDK 526 (650)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 526 (650)
..-|++.+... |.+...|..+..+..+.+++++++..|++.++. ++..+..|+.....+...+++++|.+.|+.+++.
T Consensus 414 ~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 414 IADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 99999999875 667778888888888999999999999999987 3447788999999999999999999999999875
Q ss_pred CCC-----CCHHHH--HHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 045674 527 GIT-----PTAASF--RALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDRE 596 (650)
Q Consensus 527 ~~~-----p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 596 (650)
... .+...+ ..++. +.-.+++.+|.++++++.+.+|....++..|+....+.|+.++|+++|++.....
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred ccccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 322 122222 12221 2234899999999999999999999999999999999999999999999988664
No 38
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=1e-15 Score=142.26 Aligned_cols=421 Identities=12% Similarity=0.030 Sum_probs=273.0
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCC-hhhHHHHHHHHHH
Q 045674 187 SLIKSFGGLGMVEELLWVWRSMKENGIEPS-LYTYNFLMNGLVNSMFIESSELVFKVMENGKVGPD-VVTYNTMIKGYCK 264 (650)
Q Consensus 187 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~ 264 (650)
....-|.++|.+++|+++|.+.+.. .|+ ...|.....+|...|+++++.+-..+.++. .|+ +.++..-..++-.
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQ 195 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHh
Confidence 3445567888888888888888875 455 677788888888888888888888777765 343 5667777777777
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CC--CCCCHHHHHHHHHHHHhcCChHHH
Q 045674 265 VGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDE-KG--IEIPSHAYNLVIGGLCKVGKCIEG 341 (650)
Q Consensus 265 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~--~~~~~~~~~~l~~~~~~~g~~~~a 341 (650)
.|++++|+.=+.-..-.+--.|..+--.+=+.+-+ .|..-.++-.+ .+ .-|......+....+...- .
T Consensus 196 lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk-----~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~--~-- 266 (606)
T KOG0547|consen 196 LGKFDEALFDVTVLCILEGFQNASIEPMAERVLKK-----QAMKKAKEKLKENRPPVLPSATFIASYFGSFHADP--K-- 266 (606)
T ss_pred hccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHH-----HHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccc--c--
Confidence 88887776433322211111121111111111111 12222222222 11 1122222222222111000 0
Q ss_pred HHHHHHHHHcCCCcCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHC---CCC---CC------HHhHHHHHHHHHhcCCH
Q 045674 342 HAIFESMIRRGCQPNVAIYTALIDSYAKL-GSMNEAINIFERMKYE---GVE---PD------EVTYGVIISGLCKNERL 408 (650)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~---~~~---p~------~~~~~~l~~~~~~~g~~ 408 (650)
..+...+...|...-..+-..+... ..+.+|...+.+-... ... .| ..+.......+.-.|+.
T Consensus 267 ----~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~ 342 (606)
T KOG0547|consen 267 ----PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDS 342 (606)
T ss_pred ----ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCc
Confidence 0000000000111111111111110 1233333333322110 000 01 11222223335557899
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045674 409 EEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRM 488 (650)
Q Consensus 409 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 488 (650)
-.|..-|+..+...+.++ ..|-.+..+|....+.++....|+.....+ +.++.+|...++++.-.+++++|..-|++.
T Consensus 343 ~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Ka 420 (606)
T KOG0547|consen 343 LGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKA 420 (606)
T ss_pred hhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999877644 337778888999999999999999999986 788999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC----
Q 045674 489 EDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGII---- 564 (650)
Q Consensus 489 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---- 564 (650)
+...+. +...|..+..+..+.++++++...|++.++.- +..++.|+..+..+..++++++|.+.|+.+++..+.
T Consensus 421 i~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF-P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~ 498 (606)
T KOG0547|consen 421 ISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKKF-PNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLI 498 (606)
T ss_pred hhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccc
Confidence 998655 77788888888889999999999999999874 337789999999999999999999999999987665
Q ss_pred --cHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045674 565 --PETAF--EDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGV 630 (650)
Q Consensus 565 --~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 630 (650)
+...+ ..++..-+ .+++.+|+++++++++.+ |....++..++....+.|+.++|+++|++....
T Consensus 499 ~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 499 IVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred cccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 22222 22333333 489999999999999987 667788999999999999999999999987654
No 39
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=2e-14 Score=132.96 Aligned_cols=296 Identities=13% Similarity=0.076 Sum_probs=180.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHhHHHHHHHHHhc
Q 045674 328 VIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVE--PDEVTYGVIISGLCKN 405 (650)
Q Consensus 328 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~ 405 (650)
+..++-...+.+++..-.+.....|+..+...-+..+.+.....|+++|+.+|+++.+...- -|..+|+.++ |.+.
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~ 310 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKN 310 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHh
Confidence 33444555566666666666666666655555555555566667777777777777665110 1445666655 3333
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 045674 406 ERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALF 485 (650)
Q Consensus 406 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 485 (650)
.+-. +..+.+-...--+.-..|+..+++-|+-.++.++|...|++.++.+ |.....|..+++-|....+...|++.+
T Consensus 311 ~~sk--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sY 387 (559)
T KOG1155|consen 311 DKSK--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESY 387 (559)
T ss_pred hhHH--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHH
Confidence 3221 1111111100011133455566666666777777777777777765 445566677777777777777777777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc
Q 045674 486 KRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIP 565 (650)
Q Consensus 486 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 565 (650)
+.+++..+. |-..|-.|+++|.-.+.+.-|+-+|+++....+. |...|..|+.+|.+.++.++|++.|..++..+-.+
T Consensus 388 RrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte 465 (559)
T KOG1155|consen 388 RRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTE 465 (559)
T ss_pred HHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhccccc
Confidence 777776443 6677777777777777777777777777765443 66677777777777777777777777777665556
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----C-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045674 566 ETAFEDMITCLCKTGRIKEACKLADGIVDR----E-REI-PGKIRTALINALRKAGNADLAIKLMHSKIGV 630 (650)
Q Consensus 566 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 630 (650)
..++..|+..+-+.++.++|..+|++.++. | ..+ ...+...|+.-+.+.+++++|..+..+++.-
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 677777777777777777777777766652 1 111 1223333555566777777777666666554
No 40
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.78 E-value=7.6e-17 Score=156.06 Aligned_cols=290 Identities=15% Similarity=0.127 Sum_probs=221.0
Q ss_pred ChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHhHHHHHHHHHhcCCHHHHHHH
Q 045674 337 KCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGV--EPDEVTYGVIISGLCKNERLEEAMQY 414 (650)
Q Consensus 337 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~a~~~ 414 (650)
+..+|...|..+... +.-...+...++.+|...+++++|.++|+.+.+... .-+...|...+-.+-+ +-++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 456677777774433 222345566677888888888888888888776410 1145566666533221 223333
Q ss_pred H-HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 045674 415 F-EFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGC 493 (650)
Q Consensus 415 ~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 493 (650)
+ +.+.+.... .+.+|..++++|.-+++.+.|++.|++.+..+ +....+|+.++.-+.....+|.|...|+..+...+
T Consensus 409 Laq~Li~~~~~-sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~ 486 (638)
T KOG1126|consen 409 LAQDLIDTDPN-SPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDP 486 (638)
T ss_pred HHHHHHhhCCC-CcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence 3 344444333 77889999999999999999999999988875 45778888888888888899999999998887644
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHH
Q 045674 494 DQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMI 573 (650)
Q Consensus 494 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 573 (650)
. +..+|..|+..|.+.++++.|.-.|+++.+.++. +......++..+-+.|+.++|+.+++++...++.++-.-...+
T Consensus 487 r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 487 R-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred h-hhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence 3 5556667788888999999999999999887655 6677778888888999999999999999998888888888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCChh
Q 045674 574 TCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYDRMG 636 (650)
Q Consensus 574 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 636 (650)
..+...+++++|...++++.+.- |.+..++..++..|.+.|+.+.|+.-|--+.+..+....
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~v-P~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKELV-PQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 89999999999999999988874 667788888999999999999999998888888777554
No 41
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=4.6e-13 Score=124.19 Aligned_cols=365 Identities=13% Similarity=0.036 Sum_probs=267.7
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHH--H
Q 045674 213 IEPSLYTYNFLMNGLVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKIT--Y 290 (650)
Q Consensus 213 ~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~ 290 (650)
...|...+-.....+.+.|..+.|+..|......- +..-.+|..|.... .+.+ ........ ...|... -
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~li---t~~e----~~~~l~~~-l~~~~h~M~~ 230 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELI---TDIE----ILSILVVG-LPSDMHWMKK 230 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhh---chHH----HHHHHHhc-CcccchHHHH
Confidence 34455555555556677888999999998887532 33445555554433 2222 22222222 1212111 1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CcCHHHHHHHHHHHH
Q 045674 291 MTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGC--QPNVAIYTALIDSYA 368 (650)
Q Consensus 291 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~ 368 (650)
-.+..++-.....+++..-.+.....|++.....-+..+.+.....++++|+.+|+++.+... --|..+|...+.+
T Consensus 231 ~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv-- 308 (559)
T KOG1155|consen 231 FFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV-- 308 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--
Confidence 234456666678888888888888888887777777778888889999999999999998721 1245566655533
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 045674 369 KLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEE 448 (650)
Q Consensus 369 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 448 (650)
+..+ ..+.++.+-...--+--..|...+..-|.-.++.++|...|++..+.++. ....|+.+++-|....+...|++
T Consensus 309 ~~~~--skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~ 385 (559)
T KOG1155|consen 309 KNDK--SKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIE 385 (559)
T ss_pred Hhhh--HHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHH
Confidence 3222 12222222111101223457778888888899999999999999998876 77889999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 045674 449 LFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGI 528 (650)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 528 (650)
.++.+++.+ |.|-..|..|+++|.-.+...-|+-.|++.....+. |...|.+|+.+|.+.++.++|++.|.++...|-
T Consensus 386 sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d 463 (559)
T KOG1155|consen 386 SYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLGD 463 (559)
T ss_pred HHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhccc
Confidence 999999985 889999999999999999999999999999987554 889999999999999999999999999998764
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 045674 529 TPTAASFRALSIGLCLSGKVARACKILDELAPK----GIIP---ETAFEDMITCLCKTGRIKEACKLADGIVD 594 (650)
Q Consensus 529 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 594 (650)
. +...+..++..|-+.++.++|..+|++.++. |..+ ..+..-|+.-+.+.+++++|..+......
T Consensus 464 t-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 464 T-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred c-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 4 6688999999999999999999999988762 2222 33344477788889999999887776653
No 42
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.77 E-value=3.2e-18 Score=162.46 Aligned_cols=262 Identities=18% Similarity=0.175 Sum_probs=110.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 045674 362 ALIDSYAKLGSMNEAINIFERMKYEG-VEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKA 440 (650)
Q Consensus 362 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 440 (650)
.+...+.+.|++++|++++.+..... ...+...|..+...+...++++.|++.++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 45777888888888888886544332 1224455566666677788888888888888877654 55666667766 688
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 045674 441 GRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEG-CDQTVYTYTILINGMFKEHRNEEALKL 519 (650)
Q Consensus 441 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~ 519 (650)
+++++|.++++...+. .++...+..++..+.+.++++++..+++.+.... ...+...|..++..+.+.|+.++|+++
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8888888888877665 3566777778888888899999988888876532 245777788888888889999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 045674 520 WDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREI 599 (650)
Q Consensus 520 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 599 (650)
++++++..+. |......+++.+...|+.+++.++++...+..+.++..+..++.++...|+.++|+.+++++.+.+ +.
T Consensus 169 ~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~ 246 (280)
T PF13429_consen 169 YRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PD 246 (280)
T ss_dssp HHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT
T ss_pred HHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-cc
Confidence 9999886544 677788888888888999988888888877766677888889999999999999999999988876 77
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045674 600 PGKIRTALINALRKAGNADLAIKLMHSKIG 629 (650)
Q Consensus 600 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 629 (650)
|+.+...++.++...|+.++|.++.+++.+
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp -HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 888888999999999999999998888765
No 43
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=2.1e-14 Score=136.34 Aligned_cols=471 Identities=12% Similarity=0.007 Sum_probs=278.9
Q ss_pred HHHHhccCCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC
Q 045674 116 FVLRNHDVSKRPNVGLRLFTWAARQKKYSHNLECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGL 195 (650)
Q Consensus 116 ~~l~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 195 (650)
++++-+..+.++..|+-+.+.+.. ...++..-..++.++.-.|+++.|..+...-.-. ..+..........+.+.
T Consensus 21 ~~~r~~l~q~~y~~a~f~adkV~~---l~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~~l~~l 95 (611)
T KOG1173|consen 21 RLVRDALMQHRYKTALFWADKVAG---LTNDPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAKCLVKL 95 (611)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHh---ccCChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHHHHHHH
Confidence 333433444556666655554443 3345555667788888888888887776554322 34677777777788888
Q ss_pred CCHHHHHHHHHHHHHC--CCCCCHHH----------------------HHHHHHHHHhcCChhHHHHHHHHHhcCCCCCC
Q 045674 196 GMVEELLWVWRSMKEN--GIEPSLYT----------------------YNFLMNGLVNSMFIESSELVFKVMENGKVGPD 251 (650)
Q Consensus 196 g~~~~a~~~~~~~~~~--~~~~~~~~----------------------~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~ 251 (650)
.++++|..++.+.... .+.-+..+ +..-...|....+.++|...+.+.+. .|
T Consensus 96 k~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~----~D 171 (611)
T KOG1173|consen 96 KEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALL----AD 171 (611)
T ss_pred HHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHh----cc
Confidence 8888888877732100 00000000 00111223344455666666666553 23
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 045674 252 VVTYNTMIKGYCKVGKTQKAMEKFRAMEARN----VQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNL 327 (650)
Q Consensus 252 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 327 (650)
...+..+...-... .-.+.+.++.+...+ ..-+......+.........-+.....-.+..-.+...+......
T Consensus 172 ~~c~Ea~~~lvs~~--mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~ 249 (611)
T KOG1173|consen 172 AKCFEAFEKLVSAH--MLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAE 249 (611)
T ss_pred hhhHHHHHHHHHHH--hcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHH
Confidence 43333332221111 111111122221110 011122222222111000000000000000111122335556666
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCC
Q 045674 328 VIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNER 407 (650)
Q Consensus 328 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 407 (650)
...-+...+++.+..++++.+.+. .++....+..-|.++...|+..+-..+=.++.+.- +-...+|-++..-|...|+
T Consensus 250 ~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k 327 (611)
T KOG1173|consen 250 KADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGK 327 (611)
T ss_pred HHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcC
Confidence 677777788888888888888776 23344445555567777787777777767777652 2246678888887888888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 045674 408 LEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKR 487 (650)
Q Consensus 408 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 487 (650)
..+|.+.|.+....+.. -...|-.++..|.-.+..|+|+..+..+.+. ++-...-+..++.-|.+.++++.|.+.|.+
T Consensus 328 ~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~ 405 (611)
T KOG1173|consen 328 YSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQ 405 (611)
T ss_pred cHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHH
Confidence 88888888877665544 3345777788888888888888888777664 222222334455567778888888888888
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 045674 488 MEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDK----GIT--PTAASFRALSIGLCLSGKVARACKILDELAPK 561 (650)
Q Consensus 488 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 561 (650)
.....+ .|+..++-++......+.+.+|..+|+..+.. +.+ --..+++.|+.++.+.+++++|+..+++++..
T Consensus 406 A~ai~P-~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l 484 (611)
T KOG1173|consen 406 ALAIAP-SDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL 484 (611)
T ss_pred HHhcCC-CcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 877643 37777777777777788888888888877621 111 13446788888888888888888888888888
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 045674 562 GIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIR 604 (650)
Q Consensus 562 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 604 (650)
.+.+..++..++.++...|+++.|++.|.+++-.. |+..+.
T Consensus 485 ~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~--p~n~~~ 525 (611)
T KOG1173|consen 485 SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALK--PDNIFI 525 (611)
T ss_pred CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcC--CccHHH
Confidence 88888888888888888888888888888888654 544333
No 44
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.76 E-value=8.5e-15 Score=146.24 Aligned_cols=292 Identities=12% Similarity=0.053 Sum_probs=191.6
Q ss_pred HhcCChHHHHHHHHHHHHcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HhHHHHHHHHHhcCCHH
Q 045674 333 CKVGKCIEGHAIFESMIRRGCQPN-VAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDE--VTYGVIISGLCKNERLE 409 (650)
Q Consensus 333 ~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~ 409 (650)
...|+++.|.+.+....+.. |+ ...+-....++.+.|+++.|..++.+..+. .|+. .........+...|+++
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~ 170 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELH 170 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHH
Confidence 35677777777776666542 33 233334456666777888888887777654 2333 22333456677778888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHH---HHHHcCCHHHHHHHH
Q 045674 410 EAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNV-LID---ALAKCGKLDEALALF 485 (650)
Q Consensus 410 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~---~~~~~g~~~~A~~~~ 485 (650)
.|...++.+.+..+. +..++..+...+...|++++|.+.+..+.+.+.. +...+.. ... .+...+..+++.+.+
T Consensus 171 ~Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L 248 (409)
T TIGR00540 171 AARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGL 248 (409)
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 888888887777655 6667777777788888888888888887776532 3332211 111 112223333333445
Q ss_pred HHHHHcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHhhC
Q 045674 486 KRMEDEGCD---QTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASF-RALSIGLCLSGKVARACKILDELAPK 561 (650)
Q Consensus 486 ~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~ 561 (650)
..+.+..+. .+...+..++..+...|++++|.+++++..+..+......+ ..........++.+.+.+.+++..+.
T Consensus 249 ~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 249 LNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 544443221 26777777888888888888888888888876443221111 11112223457788888888888888
Q ss_pred CCCcH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045674 562 GIIPE--TAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGV 630 (650)
Q Consensus 562 ~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 630 (650)
.|.++ .....+++.+.+.|++++|.+.|+++......|+...+..++..+.+.|+.++|.+++++.++.
T Consensus 329 ~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 329 VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88888 7888889999999999999999985333233577777888888899999999999998887653
No 45
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.76 E-value=1.7e-14 Score=143.18 Aligned_cols=285 Identities=9% Similarity=0.003 Sum_probs=214.4
Q ss_pred cCChHHHHHHHHHHHHcCCCcCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHH--HHHHHHHhcCCHHHH
Q 045674 335 VGKCIEGHAIFESMIRRGCQPNVAIYTAL-IDSYAKLGSMNEAINIFERMKYEGVEPDEVTYG--VIISGLCKNERLEEA 411 (650)
Q Consensus 335 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~--~l~~~~~~~g~~~~a 411 (650)
.|+++.|++.+....+.. ++...+..+ .....+.|+++.|..++.++.+. .|+..... .....+...|++++|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 688888887777655542 123333333 44447888899999999888765 44543222 335677888999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHHcCCHHHHHHH
Q 045674 412 MQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDS-------YCYNVLIDALAKCGKLDEALAL 484 (650)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~ 484 (650)
...++.+.+..+. +...+..+...|.+.|++++|.+++..+.+.+..++. ..|..++.......+.+...++
T Consensus 173 l~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 9999888888766 7778888888899999999999999888887533222 1222333333344455666666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 045674 485 FKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGII 564 (650)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 564 (650)
++.+.+. .+.+......+...+...|+.++|.+++++..+. .++..... +.+....++.+++++.+++..+..|.
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~~--l~~~l~~~~~~~al~~~e~~lk~~P~ 326 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLVL--LIPRLKTNNPEQLEKVLRQQIKQHGD 326 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHH--HHhhccCCChHHHHHHHHHHHhhCCC
Confidence 6666443 2347788888999999999999999999999884 44554332 23344569999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 045674 565 PETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVG 631 (650)
Q Consensus 565 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 631 (650)
++..+..++..+.+.|++++|.+.|+++++. .|+...+..++.++.+.|+.++|.+.+++.+..-
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999986 5888888899999999999999999999988753
No 46
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=8.8e-14 Score=132.23 Aligned_cols=473 Identities=12% Similarity=0.025 Sum_probs=322.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 045674 146 NLECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMN 225 (650)
Q Consensus 146 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 225 (650)
+..-+..+.+-+..+.++..|.-+-+++...+ .++...-.++..+.-.|++++|..+...-.-. ..|..+......
T Consensus 15 s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~--~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~ 90 (611)
T KOG1173|consen 15 SLEKYRRLVRDALMQHRYKTALFWADKVAGLT--NDPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAK 90 (611)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcc--CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHH
Confidence 34445556666667778888888888887665 35555566888888889999998887765432 346777777778
Q ss_pred HHHhcCChhHHHHHHHHHhc--CC-----------CCCChh-----------hHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 045674 226 GLVNSMFIESSELVFKVMEN--GK-----------VGPDVV-----------TYNTMIKGYCKVGKTQKAMEKFRAMEAR 281 (650)
Q Consensus 226 ~~~~~~~~~~A~~~~~~~~~--~~-----------~~~~~~-----------~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 281 (650)
++.+..+++.|..++..... .. +.+|.. .+-.-...|....+.++|...|.+....
T Consensus 91 ~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~ 170 (611)
T KOG1173|consen 91 CLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLA 170 (611)
T ss_pred HHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhc
Confidence 88999999999888872210 00 011110 0111123444556677777777776654
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCH
Q 045674 282 NVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGI----EIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNV 357 (650)
Q Consensus 282 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 357 (650)
++. .-..+..|+....- .+.+.++.+..... ..+......+.....-...-++....-++..-.+..-+.
T Consensus 171 D~~-c~Ea~~~lvs~~ml-----t~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~ 244 (611)
T KOG1173|consen 171 DAK-CFEAFEKLVSAHML-----TAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENL 244 (611)
T ss_pred chh-hHHHHHHHHHHHhc-----chhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcH
Confidence 221 22222222222211 11122222221110 111122222222111010001111111111111233355
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 045674 358 AIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGL 437 (650)
Q Consensus 358 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 437 (650)
.........+...+++.+..++.+.+.+.. .+....+..-|.++...|+..+-..+=.++.+..+. ...+|-+++--|
T Consensus 245 dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~-~a~sW~aVg~YY 322 (611)
T KOG1173|consen 245 DLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS-KALSWFAVGCYY 322 (611)
T ss_pred HHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CCcchhhHHHHH
Confidence 666667777888999999999999998752 334445555566888889888877777888887665 778888898888
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 045674 438 GKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEAL 517 (650)
Q Consensus 438 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 517 (650)
...|+..+|.+.|.+....+ +.-...|..++..|.-.|..|+|+..+..+-+.-.. ...-+-.++.-|.+.+..+.|.
T Consensus 323 l~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G-~hlP~LYlgmey~~t~n~kLAe 400 (611)
T KOG1173|consen 323 LMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG-CHLPSLYLGMEYMRTNNLKLAE 400 (611)
T ss_pred HHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC-CcchHHHHHHHHHHhccHHHHH
Confidence 89999999999999988865 445678999999999999999999999988774211 2222344566688899999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC----C---cHHHHHHHHHHHHHcCCHHHHHHHHH
Q 045674 518 KLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGI----I---PETAFEDMITCLCKTGRIKEACKLAD 590 (650)
Q Consensus 518 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~---~~~~~~~l~~~~~~~g~~~~A~~~~~ 590 (650)
++|.++....+. |+..++.++-+....+.+.+|..+|+.++..-. . -..+++.||+++.+.+++++|+..++
T Consensus 401 ~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q 479 (611)
T KOG1173|consen 401 KFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQ 479 (611)
T ss_pred HHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHH
Confidence 999999876544 778889999888999999999999999883211 1 23458999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 045674 591 GIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYDR 634 (650)
Q Consensus 591 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 634 (650)
+++... +.+..++..++-.|...|+++.|++.|++++...+..
T Consensus 480 ~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n 522 (611)
T KOG1173|consen 480 KALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDN 522 (611)
T ss_pred HHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCcc
Confidence 999986 8899999999999999999999999999999987775
No 47
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=1.3e-15 Score=147.71 Aligned_cols=285 Identities=14% Similarity=0.075 Sum_probs=228.3
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 045674 302 DFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRG--CQPNVAIYTALIDSYAKLGSMNEAINI 379 (650)
Q Consensus 302 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~ 379 (650)
+..+|...|..+... +.....+...+..+|...+++++|+++|+.+.+.. ..-+..+|.+.+.-+-+. -++.+
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 456777777774443 33344666677788888888888888888777652 112455666665543221 12222
Q ss_pred H-HHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 045674 380 F-ERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGC 458 (650)
Q Consensus 380 ~-~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 458 (650)
+ +.+.+. -+-.+.+|..+..+|.-+++.+.|++.|++..+.++. ...+|+.+..-+.....+|.|...|+..+...
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~- 485 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVD- 485 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-
Confidence 2 222222 1335789999999999999999999999999987655 77889999999999999999999999999875
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 045674 459 PRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRAL 538 (650)
Q Consensus 459 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l 538 (650)
+.+...|+.++..|.+.++++.|+-.|+++.+.++. +.+....++..+.+.|+.++|+++++++....+. |+..-...
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~ 563 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHR 563 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHH
Confidence 667788999999999999999999999999998765 7777888888899999999999999999987666 66666667
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 045674 539 SIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDRE 596 (650)
Q Consensus 539 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 596 (650)
+..+.-.+++++|+..++++.+.-|++..++..++..|.+.|+.+.|+.-|--+.+.+
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 7788889999999999999999989999999999999999999999999999999876
No 48
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.72 E-value=4.4e-17 Score=154.68 Aligned_cols=262 Identities=18% Similarity=0.184 Sum_probs=110.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcC-CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc
Q 045674 327 LVIGGLCKVGKCIEGHAIFESMIRRG-CQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKN 405 (650)
Q Consensus 327 ~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 405 (650)
.+...+.+.|++++|.++++...... ...+...|..+.......++++.|...|+++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 45667777778888888776554443 2334455555666777788888888888888765433 44456666655 678
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 045674 406 ERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKG-CPRDSYCYNVLIDALAKCGKLDEALAL 484 (650)
Q Consensus 406 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~ 484 (650)
+++++|.++++...+.. ++...+..++..+...++++++..+++.+.... .+.+...|..++..+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88888888887665543 355566777788888889999888888876532 346777888888889999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 045674 485 FKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGII 564 (650)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 564 (650)
+++.++..+. |....+.++..+...|+.+++.++++...+.. ..|...+..++.++...|+.++|+.+++++.+..|.
T Consensus 169 ~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~ 246 (280)
T PF13429_consen 169 YRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD 246 (280)
T ss_dssp HHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccccc
Confidence 9999887544 67778888888888899998888888877653 335567778889999999999999999999998888
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 045674 565 PETAFEDMITCLCKTGRIKEACKLADGIVD 594 (650)
Q Consensus 565 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 594 (650)
|+.+...++.++...|+.++|.++.+++.+
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp -HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 999999999999999999999999888764
No 49
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.72 E-value=9.5e-14 Score=138.75 Aligned_cols=292 Identities=12% Similarity=0.063 Sum_probs=186.0
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 045674 299 LEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAIN 378 (650)
Q Consensus 299 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 378 (650)
..|+++.|.+.+....+.... +...+......+.+.|+.+.|.+.+.++.+....+...........+...|++++|..
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~-~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAE-PVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 456666666666655544211 2233334455566666667777666666554222222233334666666777777777
Q ss_pred HHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHH---HHHcCCHHHHHHHHHHHH
Q 045674 379 IFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYS-SLIDG---LGKAGRVDEAEELFEEMV 454 (650)
Q Consensus 379 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~---~~~~~~~~~A~~~~~~~~ 454 (650)
.++.+.+.... +...+..+...+...|++++|.+.+..+.+.+.. +...+. ....+ ....+..+++.+.+..+.
T Consensus 175 ~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 175 GVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 77777665322 4456666666777777777777777777766543 222221 11111 122223333344555544
Q ss_pred HcC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 045674 455 EKG---CPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYT-YTILINGMFKEHRNEEALKLWDMMIDKGITP 530 (650)
Q Consensus 455 ~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p 530 (650)
+.. .+.+...+..++..+...|++++|.+++++..+..++..... ...........++.+.+.+.+++..+..+.
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~- 331 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD- 331 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC-
Confidence 432 124788888899999999999999999999988754422111 122222234467888999999998876444
Q ss_pred CH--HHHHHHHHHHHhcCCHHHHHHHHHH--HhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 045674 531 TA--ASFRALSIGLCLSGKVARACKILDE--LAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDR 595 (650)
Q Consensus 531 ~~--~~~~~l~~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 595 (650)
|. ....++++.+.+.|++++|.++|+. +.+..|+ ...+.+++.++.+.|+.++|.++|++.+..
T Consensus 332 ~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~-~~~~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 332 KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLD-ANDLAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 55 6778999999999999999999994 5556554 444669999999999999999999997653
No 50
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.71 E-value=2.2e-13 Score=135.29 Aligned_cols=285 Identities=11% Similarity=0.064 Sum_probs=197.3
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHH--HHHHHHHHHHhcCCHHHHH
Q 045674 300 EGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVA--IYTALIDSYAKLGSMNEAI 377 (650)
Q Consensus 300 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~ 377 (650)
.|++++|++.+....+.... ....|........+.|+++.|...+.++.+. .|+.. ........+...|++++|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 57777777666654443211 1222333344446777777777777777665 33332 2223356677778888888
Q ss_pred HHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHH
Q 045674 378 NIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNA-------MFYSSLIDGLGKAGRVDEAEELF 450 (650)
Q Consensus 378 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~ 450 (650)
..++++.+.... +...+..+...|.+.|++++|.+++..+.+.+...+. ..|..++.......+.+...+++
T Consensus 174 ~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 888887766322 4566777777788888888888888877776544222 12223333333444556666666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 045674 451 EEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITP 530 (650)
Q Consensus 451 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p 530 (650)
+.+.+. .+.++.....++..+...|+.++|.+++++..+. .++... .++.+....++.+++++..+...+..+.
T Consensus 253 ~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P~- 326 (398)
T PRK10747 253 KNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHGD- 326 (398)
T ss_pred HhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCCC-
Confidence 666444 3568888889999999999999999999988885 334432 2334445669999999999999887655
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 045674 531 TAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDR 595 (650)
Q Consensus 531 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 595 (650)
|...+..+++.+.+.|++++|.+.|+.+.+..|.+ ..+..++.++.+.|+.++|.++|++.+..
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 77788899999999999999999999999886653 44667899999999999999999988764
No 51
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.70 E-value=4.5e-11 Score=115.56 Aligned_cols=510 Identities=12% Similarity=0.091 Sum_probs=318.3
Q ss_pred HHHHHhhcCCCChHHHHHHHHhccCCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-
Q 045674 99 DSFCRKFLIKLSPNFVSFVLRNHDVSKRPNVGLRLFTWAARQKKYSHNLECYISLIDCLALCGDVDRVRLVFNELKEKG- 177 (650)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 177 (650)
+.-+++...+.....-...++-....+-|+-++.++++..+. ++..-.-.+..+.+.+++++|.+.+..++...
T Consensus 126 drALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~-----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~ 200 (835)
T KOG2047|consen 126 DRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV-----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDE 200 (835)
T ss_pred HHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc-----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchh
Confidence 333333344444444444555555566778888888877664 33445667788888899999988888775331
Q ss_pred -----CCCCHHHHHHHHHHHHcCCCHHH---HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCC
Q 045674 178 -----FLMTVSAANSLIKSFGGLGMVEE---LLWVWRSMKENGIEPSLYTYNFLMNGLVNSMFIESSELVFKVMENGKVG 249 (650)
Q Consensus 178 -----~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~ 249 (650)
.+.+...|..+-....++.+.-. ...+++.+...-.+.-...|.+|...|++.|.++.|..++++.... .
T Consensus 201 f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v 278 (835)
T KOG2047|consen 201 FVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--V 278 (835)
T ss_pred hhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--h
Confidence 24556677777776666544322 2233444443322223457888888999999999999999887754 2
Q ss_pred CChhhHHHHHHHHHHcCC----------------------hhHHHHHHHHHHhCCC-----------CCCHHHHHHHHHH
Q 045674 250 PDVVTYNTMIKGYCKVGK----------------------TQKAMEKFRAMEARNV-----------QPDKITYMTLIQA 296 (650)
Q Consensus 250 ~~~~~~~~l~~~~~~~g~----------------------~~~A~~~~~~~~~~~~-----------~~~~~~~~~l~~~ 296 (650)
..+.-|..+.+.|....+ ++-...-|+.+...+. +.++..|..-+
T Consensus 279 ~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV-- 356 (835)
T KOG2047|consen 279 MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRV-- 356 (835)
T ss_pred eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhh--
Confidence 334444444444443211 1122233333332210 11222332222
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcC---HHHHHHHHHHH
Q 045674 297 CYLEGDFDSCLSLYHEMDEKGIEI------PSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPN---VAIYTALIDSY 367 (650)
Q Consensus 297 ~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~ 367 (650)
-+..|+..+-...|.+.... +.| ....|..+...|-..|+++.|..+|++..+-..+-- ..+|...+.+-
T Consensus 357 ~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemE 435 (835)
T KOG2047|consen 357 KLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEME 435 (835)
T ss_pred hhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHH
Confidence 22356667777777776653 111 234677888899999999999999999887643322 34677777777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCC----------C-------CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 045674 368 AKLGSMNEAINIFERMKYEGVE----------P-------DEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFY 430 (650)
Q Consensus 368 ~~~~~~~~A~~~~~~~~~~~~~----------p-------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 430 (650)
.+..+++.|++++++.....-. | +...|...++..-..|-++....+|+++.+..+. ++...
T Consensus 436 lrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii 514 (835)
T KOG2047|consen 436 LRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQII 514 (835)
T ss_pred HhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHH
Confidence 7888899999988876532111 1 2234555566566678888888899988887665 44444
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHH---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 045674 431 SSLIDGLGKAGRVDEAEELFEEMVEKGCPRD-SYCYNVLIDALAK---CGKLDEALALFKRMEDEGCDQTVYTYTILING 506 (650)
Q Consensus 431 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 506 (650)
...+..+-...-++++.+++++-+..--.|+ ..+|+..+.-+.+ ..+++.|..+|++.++ |++|...-+..|+.+
T Consensus 515 ~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA 593 (835)
T KOG2047|consen 515 INYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYA 593 (835)
T ss_pred HHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHH
Confidence 4455555666778899998888776532343 3567776666554 2468899999999998 666655444444433
Q ss_pred HH--hcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--cHHHHHHHHHHHHHcC
Q 045674 507 MF--KEHRNEEALKLWDMMIDKGITPTA--ASFRALSIGLCLSGKVARACKILDELAPKGII--PETAFEDMITCLCKTG 580 (650)
Q Consensus 507 ~~--~~~~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g 580 (650)
-. +.|-...|+.+++++... +++.. ..|+..+.--...=-+.....+|+++++.-|. ..+.....++.-++.|
T Consensus 594 ~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklG 672 (835)
T KOG2047|consen 594 KLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLG 672 (835)
T ss_pred HHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhh
Confidence 22 568888999999997653 33322 34554443332222344566788888876454 2345556778888999
Q ss_pred CHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHH
Q 045674 581 RIKEACKLADGIVDREREI--PGKIRTALINALRKAGNADLAIK 622 (650)
Q Consensus 581 ~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~ 622 (650)
..+.|..+|....+.- +| +...|...-..-.++|+-+--.+
T Consensus 673 EidRARaIya~~sq~~-dPr~~~~fW~twk~FEvrHGnedT~ke 715 (835)
T KOG2047|consen 673 EIDRARAIYAHGSQIC-DPRVTTEFWDTWKEFEVRHGNEDTYKE 715 (835)
T ss_pred hHHHHHHHHHhhhhcC-CCcCChHHHHHHHHHHHhcCCHHHHHH
Confidence 9999999998887763 33 57788888777888998443333
No 52
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.66 E-value=1.9e-14 Score=127.12 Aligned_cols=235 Identities=11% Similarity=0.044 Sum_probs=208.6
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 045674 393 VTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDAL 472 (650)
Q Consensus 393 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 472 (650)
.--+.+.++|.+.|.+.+|.+.++...+... -..||..|...|.+..+.+.|+.++.+.++. +|-|+.....+.+.+
T Consensus 224 wWk~Q~gkCylrLgm~r~AekqlqssL~q~~--~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ 300 (478)
T KOG1129|consen 224 WWKQQMGKCYLRLGMPRRAEKQLQSSLTQFP--HPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIH 300 (478)
T ss_pred HHHHHHHHHHHHhcChhhhHHHHHHHhhcCC--chhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHH
Confidence 3346788999999999999999998888754 4557788899999999999999999999987 577777778889999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 045674 473 AKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARAC 552 (650)
Q Consensus 473 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 552 (650)
...++.++|.++++...+.... ++....++...|.-.++++-|+.+++++++.|+. +...|..++-+|...++++-++
T Consensus 301 eam~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L 378 (478)
T KOG1129|consen 301 EAMEQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVL 378 (478)
T ss_pred HHHHhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhH
Confidence 9999999999999999987543 7777778888899999999999999999999988 8999999999999999999999
Q ss_pred HHHHHHhhCCC--C-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045674 553 KILDELAPKGI--I-PETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIG 629 (650)
Q Consensus 553 ~~~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 629 (650)
.-|+++...-. . -.++|.+++.+....|++.-|.+.|+-++..+ +.+.+.++.|+-.-.+.|+.++|+.+++.+..
T Consensus 379 ~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 379 PSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 99999986533 2 57899999999999999999999999999887 77889999999999999999999999999998
Q ss_pred CCCC
Q 045674 630 VGYD 633 (650)
Q Consensus 630 ~~~~ 633 (650)
..|.
T Consensus 458 ~~P~ 461 (478)
T KOG1129|consen 458 VMPD 461 (478)
T ss_pred hCcc
Confidence 8765
No 53
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.66 E-value=2.7e-10 Score=110.36 Aligned_cols=493 Identities=11% Similarity=0.073 Sum_probs=285.5
Q ss_pred CCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHH
Q 045674 123 VSKRPNVGLRLFTWAARQKKYSHNLECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELL 202 (650)
Q Consensus 123 ~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 202 (650)
.+++.......|+.+.+.-........|...+...-..|-++-+..++++.++. ++..-+-.+..++..++.++|.
T Consensus 114 ~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~~eaa 189 (835)
T KOG2047|consen 114 KQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDRLDEAA 189 (835)
T ss_pred hcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccchHHHH
Confidence 344555555555555444323333345556666666666777777777777754 4444566667777777777777
Q ss_pred HHHHHHHHCC------CCCCHHHHHHHHHHHHhcCChh---HHHHHHHHHhcCCCCCC--hhhHHHHHHHHHHcCChhHH
Q 045674 203 WVWRSMKENG------IEPSLYTYNFLMNGLVNSMFIE---SSELVFKVMENGKVGPD--VVTYNTMIKGYCKVGKTQKA 271 (650)
Q Consensus 203 ~~~~~~~~~~------~~~~~~~~~~ll~~~~~~~~~~---~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A 271 (650)
+.+....... .+.+...|.-+....++.-+.- ....+++.++.. -+| -..|+.|.+.|.+.|.+++|
T Consensus 190 ~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~eka 267 (835)
T KOG2047|consen 190 QRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKA 267 (835)
T ss_pred HHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHH
Confidence 7776665321 2334455555555555443322 233444444432 233 34678888888888888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----------------------CHHHHHHHHHHHHHCCC-----------
Q 045674 272 MEKFRAMEARNVQPDKITYMTLIQACYLEG----------------------DFDSCLSLYHEMDEKGI----------- 318 (650)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------------~~~~a~~~~~~~~~~~~----------- 318 (650)
.++|++.... ..+..-|..+...|..-. +++-.+.-|+.+.....
T Consensus 268 rDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn 345 (835)
T KOG2047|consen 268 RDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQN 345 (835)
T ss_pred HHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcC
Confidence 8888877654 223334444444443211 11222233333332210
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-
Q 045674 319 EIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPN------VAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPD- 391 (650)
Q Consensus 319 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~- 391 (650)
+.++..|.. +.-+..|+..+-...+.+++.. +.|. ...|..+...|...|+.+.|..+|++..+-...--
T Consensus 346 ~~nV~eW~k--RV~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~ 422 (835)
T KOG2047|consen 346 PHNVEEWHK--RVKLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVE 422 (835)
T ss_pred CccHHHHHh--hhhhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchH
Confidence 001111111 1123345566666777777654 2222 23567778888888888888888888776433211
Q ss_pred --HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----------------CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 045674 392 --EVTYGVIISGLCKNERLEEAMQYFEFCRANGVA-----------------VNAMFYSSLIDGLGKAGRVDEAEELFEE 452 (650)
Q Consensus 392 --~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 452 (650)
..+|......-.+..+++.|+++++......-. -+...|...+...-..|-++....+++.
T Consensus 423 dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdr 502 (835)
T KOG2047|consen 423 DLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDR 502 (835)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 335555566666777888888877765432111 0234456666666667788888888888
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCC
Q 045674 453 MVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTV-YTYTILINGMFK---EHRNEEALKLWDMMIDKGI 528 (650)
Q Consensus 453 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~ 528 (650)
++... -.++.+....+..+..+.-++++.+++++-+..-..|++ ..|+..+..+.+ ....+.|..+|+++++ |.
T Consensus 503 iidLr-iaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~C 580 (835)
T KOG2047|consen 503 IIDLR-IATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GC 580 (835)
T ss_pred HHHHh-cCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cC
Confidence 88764 245555555566666677788888888877665444554 356665555542 3467888889988888 45
Q ss_pred CCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHhhCCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH---
Q 045674 529 TPTAASFR--ALSIGLCLSGKVARACKILDELAPKGII--PETAFEDMITCLCKTGRIKEACKLADGIVDREREIPG--- 601 (650)
Q Consensus 529 ~p~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--- 601 (650)
+|...-+. ..+..--+.|....|+.+++++...-.. --..|+..+.--...=-...-..+|+++++. -|+.
T Consensus 581 pp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r 658 (835)
T KOG2047|consen 581 PPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAR 658 (835)
T ss_pred CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHH
Confidence 55543222 2223334568888888888887755322 2345554443222222234456777777765 2333
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045674 602 KIRTALINALRKAGNADLAIKLMHSKIGV 630 (650)
Q Consensus 602 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 630 (650)
.....++..-.+.|..+.|+.+|.-..+.
T Consensus 659 ~mclrFAdlEtklGEidRARaIya~~sq~ 687 (835)
T KOG2047|consen 659 EMCLRFADLETKLGEIDRARAIYAHGSQI 687 (835)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHhhhhc
Confidence 34456677778899999999998876664
No 54
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.65 E-value=1.2e-11 Score=110.77 Aligned_cols=479 Identities=11% Similarity=0.039 Sum_probs=278.2
Q ss_pred hccCCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHH
Q 045674 120 NHDVSKRPNVGLRLFTWAARQKKYSHNLECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVE 199 (650)
Q Consensus 120 ~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 199 (650)
-....+++..|..+++....... +....+-..++.++...|++++|...+..+.+.. .++...+..|.-.+.-.|.+.
T Consensus 31 dfls~rDytGAislLefk~~~~~-EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNLDR-EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHHhcccchhHHHHHHHhhccch-hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHH
Confidence 33456678888888887654332 2222344457778888888888888888887764 556666777777777788888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHH
Q 045674 200 ELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAME 279 (650)
Q Consensus 200 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 279 (650)
+|..+-.+..+ +...-..++....+.++-++-..+.+.+.+ ...--..|.......-.+++|++++.+.+
T Consensus 109 eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkrvL 178 (557)
T KOG3785|consen 109 EAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKRVL 178 (557)
T ss_pred HHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777665432 333344445555666766665555555542 22333345555445567788888888887
Q ss_pred hCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHH
Q 045674 280 ARNVQPDKITYMTL-IQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVA 358 (650)
Q Consensus 280 ~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 358 (650)
.. .|+-...+.. ..+|.+..-++-+.++++-..+. ++.+....+..+....+.-.-..|..-..++.+.+-..
T Consensus 179 ~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~--- 252 (557)
T KOG3785|consen 179 QD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE--- 252 (557)
T ss_pred hc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc---
Confidence 65 3344444443 34556677777777777777665 33345555555555555444444555555555442211
Q ss_pred HHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 045674 359 IYTALIDSYAKL-----GSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSL 433 (650)
Q Consensus 359 ~~~~l~~~~~~~-----~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 433 (650)
| ..+.-.++. ..-+.|++++-.+.+. .|. .-..++--|.+++++++|..+.+++.-. ++.-|-.-
T Consensus 253 -~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPE--ARlNL~iYyL~q~dVqeA~~L~Kdl~Pt----tP~EyilK 322 (557)
T KOG3785|consen 253 -Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPE--ARLNLIIYYLNQNDVQEAISLCKDLDPT----TPYEYILK 322 (557)
T ss_pred -c-hhHHHHHHcCeEEEeCCccHHHhchHHHhh--ChH--hhhhheeeecccccHHHHHHHHhhcCCC----ChHHHHHH
Confidence 1 123333332 2346777777666543 232 2233444577888888888877655321 22222222
Q ss_pred HHHHHHcC-------CHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 045674 434 IDGLGKAG-------RVDEAEELFEEMVEKGCPRDS-YCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILIN 505 (650)
Q Consensus 434 ~~~~~~~~-------~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 505 (650)
.-.+...| .+.-|.+.|.-.-+.+...|. ..-..++..+.-..++++++..++.+...-...|...+ .+..
T Consensus 323 gvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQ 401 (557)
T KOG3785|consen 323 GVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQ 401 (557)
T ss_pred HHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHH
Confidence 22233333 244555555544443322222 22344555566667788888888777765444444444 3677
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-cHHHHHHHHHHHHHcCCHHH
Q 045674 506 GMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGII-PETAFEDMITCLCKTGRIKE 584 (650)
Q Consensus 506 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~ 584 (650)
+++..|.+.+|.++|-++....++.+......++++|.+.++.+-|++++-++-. +. .-..+..++..+.+.+++=-
T Consensus 402 Ak~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t--~~e~fsLLqlIAn~CYk~~eFyy 479 (557)
T KOG3785|consen 402 AKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNT--PSERFSLLQLIANDCYKANEFYY 479 (557)
T ss_pred HHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC--chhHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888888887776554553333334567788888888888776655432 11 23445556777778888777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCChhhhhh
Q 045674 585 ACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVG--YDRMGSIKR 640 (650)
Q Consensus 585 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~ 640 (650)
|.+.|+.+... .|+++.| .|+-.....++..+.... +.|.+-+..
T Consensus 480 aaKAFd~lE~l--DP~pEnW---------eGKRGACaG~f~~l~~~~~~~~p~~~~rE 526 (557)
T KOG3785|consen 480 AAKAFDELEIL--DPTPENW---------EGKRGACAGLFRQLANHKTDPIPISQMRE 526 (557)
T ss_pred HHHhhhHHHcc--CCCcccc---------CCccchHHHHHHHHHcCCCCCCchhHHHH
Confidence 77777776655 4666666 344444455566555442 234444443
No 55
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.64 E-value=2.4e-12 Score=114.02 Aligned_cols=286 Identities=14% Similarity=0.148 Sum_probs=199.0
Q ss_pred cCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC------HHHHHHHHHHHHhcCCH
Q 045674 230 SMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPD------KITYMTLIQACYLEGDF 303 (650)
Q Consensus 230 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~ 303 (650)
+.+.++|.++|-.|.+.. +-+..+..+|.+.|-+.|..|.|+++.+.+.++ || ......|..-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 456677778887777643 234556667778888888888888888877764 22 23344566777788888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCH----HHHHHHHHHHHhcCCHHHHHHH
Q 045674 304 DSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNV----AIYTALIDSYAKLGSMNEAINI 379 (650)
Q Consensus 304 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~ 379 (650)
|.|+++|..+.+.+ ..-......|+.+|-...+|++|+++-+++.+.+-.+.. ..|.-|...+....++++|..+
T Consensus 124 DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 124 DRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 88888888877653 234566777888888888888888888877776544332 2455566666677888888888
Q ss_pred HHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 045674 380 FERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCP 459 (650)
Q Consensus 380 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 459 (650)
+.+..+.+.+ ....-..+.+.+...|+++.|.+.++.+.+.++..-..+...|..+|.+.|+.++....+..+.+..
T Consensus 203 l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~-- 279 (389)
T COG2956 203 LKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN-- 279 (389)
T ss_pred HHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--
Confidence 8888775322 2334445667788888899998888888888777667777888888888899888888888888863
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---hcCCHHHHHHHHHHHHH
Q 045674 460 RDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMF---KEHRNEEALKLWDMMID 525 (650)
Q Consensus 460 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~A~~~~~~~~~ 525 (650)
++...-..+........-.+.|...+.+-+.. .|+...+..|+.... ..|+..+-+..++.|+.
T Consensus 280 ~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 280 TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 44445555555555555556666655555444 478888888877554 34456666677777764
No 56
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=2.8e-11 Score=110.76 Aligned_cols=323 Identities=15% Similarity=0.069 Sum_probs=221.6
Q ss_pred CCCHHHHHHHHHHH--HhcCChHHHHHHHHHHHHc-CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-h
Q 045674 319 EIPSHAYNLVIGGL--CKVGKCIEGHAIFESMIRR-GCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEV-T 394 (650)
Q Consensus 319 ~~~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~-~ 394 (650)
++...+...++.++ +-.++...+...+-.+... .++-|+.....+...+...|+.++|+..|++.... .|+.. .
T Consensus 191 ~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~ 268 (564)
T KOG1174|consen 191 PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEA 268 (564)
T ss_pred CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--Chhhhhh
Confidence 33334444444333 3344555555554444433 24556777777888888888888888888887654 33322 2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 045674 395 YGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAK 474 (650)
Q Consensus 395 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 474 (650)
+......+.+.|+++....+...+....- .....|..-+.......+++.|+.+-++.+..+ +.+...+..-+..+.+
T Consensus 269 MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~-~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~ 346 (564)
T KOG1174|consen 269 MDLYAVLLGQEGGCEQDSALMDYLFAKVK-YTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIA 346 (564)
T ss_pred HHHHHHHHHhccCHhhHHHHHHHHHhhhh-cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHh
Confidence 22223334567777777777766655421 133334444455556677888888888887764 5566667667777888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHH-hcCCHHHHH
Q 045674 475 CGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALS-IGLC-LSGKVARAC 552 (650)
Q Consensus 475 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~-~~~~-~~g~~~~A~ 552 (650)
.|+.++|.-.|+..+...+ -+...|..|+.+|...|++.+|.-+-....+. +.-+..++..++ .++. ...--++|.
T Consensus 347 ~~R~~~A~IaFR~Aq~Lap-~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAK 424 (564)
T KOG1174|consen 347 LERHTQAVIAFRTAQMLAP-YRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAK 424 (564)
T ss_pred ccchHHHHHHHHHHHhcch-hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHH
Confidence 8888888888888877643 26778888888888888888888777776654 233566666554 3332 333457888
Q ss_pred HHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 045674 553 KILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGY 632 (650)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 632 (650)
+++++.+...|.-..+...+++.+...|++++++.++++.+.. .+|....+.|++.+...+.+.+|.+.|..++..+|
T Consensus 425 kf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP 502 (564)
T KOG1174|consen 425 KFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDP 502 (564)
T ss_pred HHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCc
Confidence 8888888888887777888888888888888888888888864 57777788888888888888888888888888888
Q ss_pred CChhhhhhhhccccccC
Q 045674 633 DRMGSIKRRVKFRSLVE 649 (650)
Q Consensus 633 ~~~~~~~~~~~~~~~~~ 649 (650)
......+-+-+.++.++
T Consensus 503 ~~~~sl~Gl~~lEK~~~ 519 (564)
T KOG1174|consen 503 KSKRTLRGLRLLEKSDD 519 (564)
T ss_pred cchHHHHHHHHHHhccC
Confidence 88877777777666543
No 57
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.64 E-value=4.1e-12 Score=116.30 Aligned_cols=287 Identities=10% Similarity=0.043 Sum_probs=172.3
Q ss_pred cCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHH
Q 045674 335 VGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQY 414 (650)
Q Consensus 335 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 414 (650)
.|++..|++...+..+.+-.| ...|..-+++-.+.|+.+.+-.++.++.+..-.++....-.........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 455555555555544443222 1223333344445555555555555555432223333444444445555555666555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-------HHHHHHHHHHHcCCHHHHHHHHHH
Q 045674 415 FEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSY-------CYNVLIDALAKCGKLDEALALFKR 487 (650)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~ 487 (650)
+..+.+.++. +..+......+|.+.|++.....++..+.+.+.-.+.. +|..+++-....+..+.-...++.
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 5555555544 44555555556666666666666666665555333322 333444433333333333445554
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHH
Q 045674 488 MEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPET 567 (650)
Q Consensus 488 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 567 (650)
.... .+.++..-..++.-+...|+.++|.++.++..+.+.+|+. .. .-.+.+-++.+.-++..++..+..+.++.
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L---~~-~~~~l~~~d~~~l~k~~e~~l~~h~~~p~ 329 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL---CR-LIPRLRPGDPEPLIKAAEKWLKQHPEDPL 329 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH---HH-HHhhcCCCCchHHHHHHHHHHHhCCCChh
Confidence 4332 2234555556666777788888888888888777665541 11 12345667777778888888877777778
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045674 568 AFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGV 630 (650)
Q Consensus 568 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 630 (650)
.+..||..|.+.+.|.+|.+.++.+++. .|+...|..++.++.+.|+..+|.+..++.+-.
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 8888888888888888888888888765 578888888888888888888888888887743
No 58
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.64 E-value=7.9e-11 Score=116.63 Aligned_cols=420 Identities=11% Similarity=0.047 Sum_probs=280.2
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCH
Q 045674 208 MKENGIEPSLYTYNFLMNGLVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDK 287 (650)
Q Consensus 208 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 287 (650)
+....+..|...|..|.-++...|+++.+.+.|++....- --....|..+.-.|...|....|..+++.-......|+.
T Consensus 314 ~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~ 392 (799)
T KOG4162|consen 314 LRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSD 392 (799)
T ss_pred HHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCc
Confidence 3333455677788888888888888888888888876432 235667888888888888888888888877654323433
Q ss_pred -HHHHHHHHHHH-hcCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHhc-----------CChHHHHHHHHHHHH
Q 045674 288 -ITYMTLIQACY-LEGDFDSCLSLYHEMDEKG----IEIPSHAYNLVIGGLCKV-----------GKCIEGHAIFESMIR 350 (650)
Q Consensus 288 -~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~-----------g~~~~a~~~~~~~~~ 350 (650)
..+......|. +.+.+++++++-.+..... -......|..+.-+|... ....++.+.+++.++
T Consensus 393 ~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~ 472 (799)
T KOG4162|consen 393 ISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQ 472 (799)
T ss_pred chHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHh
Confidence 33333334443 3566777777776666521 122344555555544322 123456677777776
Q ss_pred cCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 045674 351 RGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFY 430 (650)
Q Consensus 351 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 430 (650)
.+.. |..+...+.--|+..++.+.|++...+..+.+-.-+...|..+.-.+...+++.+|+.+.+........ |....
T Consensus 473 ~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~-N~~l~ 550 (799)
T KOG4162|consen 473 FDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD-NHVLM 550 (799)
T ss_pred cCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh-hhhhc
Confidence 6432 333333466667778888888888888887655557778888887788888888888888877665322 33333
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH---------HHHHHHcCCHHHHHHHHHHHH--------HcC-
Q 045674 431 SSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVL---------IDALAKCGKLDEALALFKRME--------DEG- 492 (650)
Q Consensus 431 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l---------~~~~~~~g~~~~A~~~~~~~~--------~~~- 492 (650)
..-+..-...++.++++.....++.. +..-..+-..+ .......++..++.+..+.+. ..|
T Consensus 551 ~~~~~i~~~~~~~e~~l~t~~~~L~~-we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~s 629 (799)
T KOG4162|consen 551 DGKIHIELTFNDREEALDTCIHKLAL-WEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGS 629 (799)
T ss_pred hhhhhhhhhcccHHHHHHHHHHHHHH-HHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccc
Confidence 33444445577888887777766542 00000000000 000000111222222211110 011
Q ss_pred ----------CCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 045674 493 ----------CDQT------VYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILD 556 (650)
Q Consensus 493 ----------~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 556 (650)
..|+ ...|......+.+.+..++|...+.++....+. ....|...+..+...|+.++|.+.|.
T Consensus 630 e~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l-~~~~~~~~G~~~~~~~~~~EA~~af~ 708 (799)
T KOG4162|consen 630 ELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPL-SASVYYLRGLLLEVKGQLEEAKEAFL 708 (799)
T ss_pred ccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchh-hHHHHHHhhHHHHHHHhhHHHHHHHH
Confidence 1122 223445566677889999999999888875333 66677888888999999999999999
Q ss_pred HHhhCCCCcHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 045674 557 ELAPKGIIPETAFEDMITCLCKTGRIKEACK--LADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYD 633 (650)
Q Consensus 557 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 633 (650)
.+...+|.+.....+++.++.+.|+..-|.. ++..+++.+ +.++.+|..++..+.+.|+.+.|-+-|..+++....
T Consensus 709 ~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S 786 (799)
T KOG4162|consen 709 VALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEES 786 (799)
T ss_pred HHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccC
Confidence 9999999999999999999999999888887 999999998 889999999999999999999999999999987654
No 59
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.62 E-value=1.3e-10 Score=112.84 Aligned_cols=162 Identities=12% Similarity=0.005 Sum_probs=79.0
Q ss_pred HHHHHHhccCCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 045674 114 VSFVLRNHDVSKRPNVGLRLFTWAARQKKYSHNLECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFG 193 (650)
Q Consensus 114 ~~~~l~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 193 (650)
+.++++.+. .+.+...+++.+.+.+. ++...++....+-.+...|+-++|.......+..+ .-+...|..+.-.+.
T Consensus 11 F~~~lk~yE-~kQYkkgLK~~~~iL~k--~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R 86 (700)
T KOG1156|consen 11 FRRALKCYE-TKQYKKGLKLIKQILKK--FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQR 86 (700)
T ss_pred HHHHHHHHH-HHHHHhHHHHHHHHHHh--CCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHh
Confidence 334444332 34455555555555442 33444455455555555556666655555555432 334455555555555
Q ss_pred cCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCChhHHHH
Q 045674 194 GLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAME 273 (650)
Q Consensus 194 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 273 (650)
...++++|+..|......+ +.|...+.-+.-.-.+.++++.....-..+.+.. +-....|..++.++.-.|++..|..
T Consensus 87 ~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~ 164 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALE 164 (700)
T ss_pred hhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666666665555543 2244444444333344455544444444444331 1223344455555555555555555
Q ss_pred HHHHHHhC
Q 045674 274 KFRAMEAR 281 (650)
Q Consensus 274 ~~~~~~~~ 281 (650)
+++...+.
T Consensus 165 il~ef~~t 172 (700)
T KOG1156|consen 165 ILEEFEKT 172 (700)
T ss_pred HHHHHHHh
Confidence 55555443
No 60
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.62 E-value=9.7e-11 Score=113.70 Aligned_cols=96 Identities=13% Similarity=0.057 Sum_probs=63.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 045674 536 RALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAG 615 (650)
Q Consensus 536 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 615 (650)
..++..+.+.|+++.|..+++.++.+.|.-.+.|..-++.+...|++++|..+++++.+.+ .+|..+-...+.-..+.+
T Consensus 375 y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn 453 (700)
T KOG1156|consen 375 YFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRAN 453 (700)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHcc
Confidence 4455666677777777777777777666666666666777777777777777777777665 444444334555556667
Q ss_pred CHHHHHHHHHHHHHCCC
Q 045674 616 NADLAIKLMHSKIGVGY 632 (650)
Q Consensus 616 ~~~~A~~~~~~~~~~~~ 632 (650)
+.++|.++..+.-..|.
T Consensus 454 ~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 454 EIEEAEEVLSKFTREGF 470 (700)
T ss_pred ccHHHHHHHHHhhhccc
Confidence 77777777776666655
No 61
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.62 E-value=1.1e-11 Score=113.63 Aligned_cols=291 Identities=12% Similarity=0.103 Sum_probs=183.8
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 045674 300 EGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINI 379 (650)
Q Consensus 300 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 379 (650)
.|+|.+|+++..+-.+.+.. ....|..-+++.-..|+.+.+-.++.++.+..-.++...+-...+.....|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 45666666665554444322 33344444555555666666666666665553344455555555666666666666666
Q ss_pred HHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHH
Q 045674 380 FERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNA-------MFYSSLIDGLGKAGRVDEAEELFEE 452 (650)
Q Consensus 380 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~ 452 (650)
+.++.+.+.. .........++|.+.|++.+...++..+.+.+.-.+. .+|..+++-....+..+.-...++.
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 6666554322 3455566666666666666666666666666544332 2344444444444444444455555
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 045674 453 MVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTA 532 (650)
Q Consensus 453 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~ 532 (650)
...+ ...++..-..++.-+.++|+.++|.++.++..+.+.+|+. .....+.+-++.+.-++..++..+..+. ++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~-~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPE-DP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCCC-Ch
Confidence 5443 3456667777777888888888888888888887666552 1222355677777777777777765443 55
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 045674 533 ASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREI 599 (650)
Q Consensus 533 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 599 (650)
..+..++..|.+.+.+.+|..+|+.+.+.. .+...++.+++++.+.|+..+|.+..++.+-.-.+|
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~~-~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~ 394 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKLR-PSASDYAELADALDQLGEPEEAEQVRREALLLTRQP 394 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhcC-CChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Confidence 778888888888888888888888877763 356777888888888888888888888877543333
No 62
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.61 E-value=5.8e-12 Score=111.64 Aligned_cols=226 Identities=17% Similarity=0.186 Sum_probs=101.4
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 045674 266 GKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIF 345 (650)
Q Consensus 266 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 345 (650)
++.++|.++|-+|.+.+ +.+..+..+|.+.|.+.|..|.|+++.+.+.++. |. |+..
T Consensus 49 ~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~sp---dl-T~~q------------------ 105 (389)
T COG2956 49 NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESP---DL-TFEQ------------------ 105 (389)
T ss_pred cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCC---CC-chHH------------------
Confidence 55666666666665532 2233444555556666666666666665555431 10 0000
Q ss_pred HHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 045674 346 ESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAV 425 (650)
Q Consensus 346 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 425 (650)
.......|..-|...|-++.|..+|..+.+.+. .-......++..|-...+|++|++.-+++.+.+..+
T Consensus 106 ----------r~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~ 174 (389)
T COG2956 106 ----------RLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQT 174 (389)
T ss_pred ----------HHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcc
Confidence 011122233444444444444444444443211 112233444444444444444444444444433222
Q ss_pred C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 045674 426 N----AMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYT 501 (650)
Q Consensus 426 ~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 501 (650)
. ...|.-+...+....+++.|..++.+..+.+ +..+..-..+++.+...|+++.|.+.++.+.+.++.--..+..
T Consensus 175 ~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~ 253 (389)
T COG2956 175 YRVEIAQFYCELAQQALASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLE 253 (389)
T ss_pred chhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHH
Confidence 1 1223333333444445555555555555443 3333333444445555555555555555555543333333444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC
Q 045674 502 ILINGMFKEHRNEEALKLWDMMIDK 526 (650)
Q Consensus 502 ~l~~~~~~~~~~~~A~~~~~~~~~~ 526 (650)
.|..+|...|+.++....+.++.+.
T Consensus 254 ~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 254 MLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 4445555555555555555555443
No 63
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.60 E-value=6.8e-11 Score=106.13 Aligned_cols=495 Identities=14% Similarity=0.129 Sum_probs=311.3
Q ss_pred CCchhhhHHHHHHhhcCCCC-hHHHHH-HHHhccCCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 045674 91 SSDMEANLDSFCRKFLIKLS-PNFVSF-VLRNHDVSKRPNVGLRLFTWAARQKKYSHNLECYISLIDCLALCGDVDRVRL 168 (650)
Q Consensus 91 ~~~~~~al~~~~~~~~~~~~-~~~~~~-~l~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 168 (650)
..++..|...+--....+.. .+.+.. +...+-+.|++++|+..+..+.... .++.+.+..++-++.-.|.+.+|..
T Consensus 35 ~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~--~~~~el~vnLAcc~FyLg~Y~eA~~ 112 (557)
T KOG3785|consen 35 NRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD--DAPAELGVNLACCKFYLGQYIEAKS 112 (557)
T ss_pred cccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC--CCCcccchhHHHHHHHHHHHHHHHH
Confidence 55666555443322222222 223333 4455567899999999999887753 4566777778888888899999998
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCC
Q 045674 169 VFNELKEKGFLMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMFIESSELVFKVMENGKV 248 (650)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~ 248 (650)
+.++..+ ++-....|...-.+.++-++...+-+.+... ...-.+|.........+.+|++++.+++..
T Consensus 113 ~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d-- 180 (557)
T KOG3785|consen 113 IAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD-- 180 (557)
T ss_pred HHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence 8877643 3444445555566778877777666665442 233445555556666789999999999866
Q ss_pred CCChhhHHHHH-HHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 045674 249 GPDVVTYNTMI-KGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNL 327 (650)
Q Consensus 249 ~~~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 327 (650)
.|+....|..+ -+|.+..-++-+.+++.-.+.. .+.+....+..+....+.=+-..|.+-.+++...+... |-
T Consensus 181 n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~----~~- 254 (557)
T KOG3785|consen 181 NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE----YP- 254 (557)
T ss_pred ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----ch-
Confidence 45666666544 5667778888888888888765 23345555655555555434444555555555543211 11
Q ss_pred HHHHHHh-----cCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 045674 328 VIGGLCK-----VGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGL 402 (650)
Q Consensus 328 l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 402 (650)
.+.-.++ -.+-+.|.+++-.+.+. -|. .-..|+-.|.+.+++.+|..+.+.+.-- ++.-|..-.-.+
T Consensus 255 f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPE--ARlNL~iYyL~q~dVqeA~~L~Kdl~Pt----tP~EyilKgvv~ 326 (557)
T KOG3785|consen 255 FIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPE--ARLNLIIYYLNQNDVQEAISLCKDLDPT----TPYEYILKGVVF 326 (557)
T ss_pred hHHHHHHcCeEEEeCCccHHHhchHHHhh--ChH--hhhhheeeecccccHHHHHHHHhhcCCC----ChHHHHHHHHHH
Confidence 2222333 24557888888888765 222 3344777789999999999988776521 233332222233
Q ss_pred HhcCC-------HHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 045674 403 CKNER-------LEEAMQYFEFCRANGVAVNA-MFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAK 474 (650)
Q Consensus 403 ~~~g~-------~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 474 (650)
+..|+ ..-|.+.|...-+.+..-|. .--.++...+.-..++|+.+-.++.+..- +..|...-..++++++.
T Consensus 327 aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~a 405 (557)
T KOG3785|consen 327 AALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLA 405 (557)
T ss_pred HHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHH
Confidence 34333 45566666655444433222 22445677777788899999888887775 34444455568899999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHH
Q 045674 475 CGKLDEALALFKRMEDEGCDQTVYTYT-ILINGMFKEHRNEEALKLWDMMIDKGITPTAA-SFRALSIGLCLSGKVARAC 552 (650)
Q Consensus 475 ~g~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~ 552 (650)
.|++.+|+++|-++....++ |..+|. .|..+|.+.++++-|..++-++. ...+.. .+..++..|.+.+.+=-|.
T Consensus 406 tgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaa 481 (557)
T KOG3785|consen 406 TGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYKANEFYYAA 481 (557)
T ss_pred hcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888766555 555565 55678889999999887765543 222232 3445567888999998899
Q ss_pred HHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCC--HHHHHHHHHHHH
Q 045674 553 KILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREI-PGKIRTALINALRKAGN--ADLAIKLMHSKI 628 (650)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~ 628 (650)
+.|+.+...+|.+ +-| .|+-....-+|..+......| ......-++..++..++ .+--+++.++-.
T Consensus 482 KAFd~lE~lDP~p-EnW---------eGKRGACaG~f~~l~~~~~~~~p~~~~rEVvhllr~~~nsq~E~mikvvrkwa 550 (557)
T KOG3785|consen 482 KAFDELEILDPTP-ENW---------EGKRGACAGLFRQLANHKTDPIPISQMREVVHLLRMKPNSQCEFMIKVVRKWA 550 (557)
T ss_pred HhhhHHHccCCCc-ccc---------CCccchHHHHHHHHHcCCCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 9998888776653 322 345455556666665443222 34455666666666664 344444444433
No 64
>PRK12370 invasion protein regulator; Provisional
Probab=99.59 E-value=1.1e-12 Score=136.16 Aligned_cols=256 Identities=14% Similarity=0.037 Sum_probs=194.9
Q ss_pred CCHHHHHHHHHHHHHCCCCCC-HHhHHHHHHHHH---------hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 045674 371 GSMNEAINIFERMKYEGVEPD-EVTYGVIISGLC---------KNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKA 440 (650)
Q Consensus 371 ~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~---------~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 440 (650)
++.++|+.+|++..+. .|+ ...|..+..++. ..+++++|...++++.+.++. +...+..+..++...
T Consensus 275 ~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~ 351 (553)
T PRK12370 275 YSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIH 351 (553)
T ss_pred HHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHc
Confidence 3467888888888875 443 344555544433 234588999999999998776 788888899999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 045674 441 GRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLW 520 (650)
Q Consensus 441 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 520 (650)
|++++|...|+++++.+ |.+...+..++.++...|++++|+..++++.+..+. +...+..++..+...|++++|...+
T Consensus 352 g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 352 SEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred cCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHH
Confidence 99999999999999986 777888999999999999999999999999998654 3333344455567789999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 045674 521 DMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIP 600 (650)
Q Consensus 521 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 600 (650)
+++.+....-+...+..++.++...|++++|...+.++....+.+....+.++..++..| ++|...++.+++.. ...
T Consensus 430 ~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~-~~~ 506 (553)
T PRK12370 430 DELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESE-QRI 506 (553)
T ss_pred HHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHh-hHh
Confidence 998876433355667788889999999999999999988776667778888888888888 47888777776542 111
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCh
Q 045674 601 GKIRTALINALRKAGNADLAIKLMHSKIGVGYDRM 635 (650)
Q Consensus 601 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 635 (650)
......+...|.-.|+.+.+..+ +++.+.|...-
T Consensus 507 ~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~ 540 (553)
T PRK12370 507 DNNPGLLPLVLVAHGEAIAEKMW-NKFKNEDNIWF 540 (553)
T ss_pred hcCchHHHHHHHHHhhhHHHHHH-HHhhccchHhh
Confidence 11122255567778888888776 88888766543
No 65
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.59 E-value=1.9e-12 Score=120.30 Aligned_cols=202 Identities=16% Similarity=0.138 Sum_probs=163.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 045674 426 NAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILIN 505 (650)
Q Consensus 426 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 505 (650)
....+..++..+...|++++|.+.++++.+.. +.+...+..++..+...|++++|.+.+++..+..+. +...+..++.
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHH
Confidence 34566677788888888888888888887764 556777788888888888888888888888876543 5667777888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHH
Q 045674 506 GMFKEHRNEEALKLWDMMIDKGIT-PTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKE 584 (650)
Q Consensus 506 ~~~~~~~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 584 (650)
.+...|++++|.+.++++.+.... .....+..++.++...|++++|...++++.+..+.+...+..++.++...|++++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 888888999999888888864322 2345667788888999999999999999998888888888899999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045674 585 ACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGV 630 (650)
Q Consensus 585 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 630 (650)
|.++++++++.. +.+...+..++..+...|+.++|..+.+.+.+.
T Consensus 188 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 188 ARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 999999998873 566777778888888999999999988877664
No 66
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=5.7e-10 Score=102.42 Aligned_cols=279 Identities=13% Similarity=0.072 Sum_probs=203.4
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHH
Q 045674 318 IEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPN-VAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYG 396 (650)
Q Consensus 318 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~ 396 (650)
++.++.....+...+...|+.++|+..|++.... .|+ +.........+.+.|+.+....+...+.... .-....|.
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wf 304 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWF 304 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhh
Confidence 5567788888888888888888888888887765 222 2222233444567788888777777765431 11333444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 045674 397 VIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCG 476 (650)
Q Consensus 397 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 476 (650)
.-+......++++.|+.+-++.++.+.. +...|-.-+.++...++.++|.-.|+...... |-+..+|..|+.+|...|
T Consensus 305 V~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~ 382 (564)
T KOG1174|consen 305 VHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQK 382 (564)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhc
Confidence 4455566778888899888888877655 66677777788888999999999999888764 678889999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 045674 477 KLDEALALFKRMEDEGCDQTVYTYTILI-NGMF-KEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKI 554 (650)
Q Consensus 477 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 554 (650)
++.+|...-+...+. +..+..++..++ ..+. ...--++|.+++++.+...+. -....+.++..+...|++++++.+
T Consensus 383 ~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~-Y~~AV~~~AEL~~~Eg~~~D~i~L 460 (564)
T KOG1174|consen 383 RFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPI-YTPAVNLIAELCQVEGPTKDIIKL 460 (564)
T ss_pred hHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCc-cHHHHHHHHHHHHhhCccchHHHH
Confidence 999988877776664 334677776664 3333 333457888888888775333 234667778888899999999999
Q ss_pred HHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 045674 555 LDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRT 605 (650)
Q Consensus 555 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 605 (650)
+++.+.. ..|....+.|++.+...+.+++|.+.|..++..+ |.+..+..
T Consensus 461 Le~~L~~-~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d-P~~~~sl~ 509 (564)
T KOG1174|consen 461 LEKHLII-FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD-PKSKRTLR 509 (564)
T ss_pred HHHHHhh-ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-ccchHHHH
Confidence 9998865 3466778889999999999999999999999876 44444433
No 67
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.58 E-value=1.3e-10 Score=115.24 Aligned_cols=411 Identities=12% Similarity=-0.016 Sum_probs=281.9
Q ss_pred CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCC-hhhH
Q 045674 177 GFLMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMFIESSELVFKVMENGKVGPD-VVTY 255 (650)
Q Consensus 177 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~ 255 (650)
.+..+..+|..|.-+....|+++.+.+.|++.....+ -....|+.+...+...|.-..|..+++......-.|+ ...+
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 3456788899999999999999999999999876533 3677888888899999999999999988765432343 3333
Q ss_pred HHHHHHHHH-cCChhHHHHHHHHHHhC--CC--CCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHCCCC
Q 045674 256 NTMIKGYCK-VGKTQKAMEKFRAMEAR--NV--QPDKITYMTLIQACYLE-----------GDFDSCLSLYHEMDEKGIE 319 (650)
Q Consensus 256 ~~l~~~~~~-~g~~~~A~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~ 319 (650)
...-+.|.+ .+..++++++-.+.... +. ......|..+.-+|... ....++++.+++..+.+..
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 333344443 37778888777777652 11 11234444444444321 1245678888888877544
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHH
Q 045674 320 IPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVII 399 (650)
Q Consensus 320 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 399 (650)
|..+...+.--|...++++.|.+...+.++.+..-+...|..|+..+...+++.+|+.+.+.....- .-|......-+
T Consensus 477 -dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~ 554 (799)
T KOG4162|consen 477 -DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKI 554 (799)
T ss_pred -CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhh
Confidence 4455555666788899999999999999998667788899999999999999999999998876541 11111122222
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC---------------------C-------CCCCHHHHHHHHHHHHHcC---CHHHHHH
Q 045674 400 SGLCKNERLEEAMQYFEFCRAN---------------------G-------VAVNAMFYSSLIDGLGKAG---RVDEAEE 448 (650)
Q Consensus 400 ~~~~~~g~~~~a~~~~~~~~~~---------------------~-------~~~~~~~~~~l~~~~~~~~---~~~~A~~ 448 (650)
..-...++.++++.....+... | +.-...++..+.......+ ..+..
T Consensus 555 ~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~-- 632 (799)
T KOG4162|consen 555 HIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK-- 632 (799)
T ss_pred hhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc--
Confidence 2223356666665554433221 0 0001112221111111000 00000
Q ss_pred HHHHHHHcCCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 045674 449 LFEEMVEKGCPRD------SYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDM 522 (650)
Q Consensus 449 ~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 522 (650)
+...... -.|+ ...|......+.+.++.++|...+.+..+.. .-....|...+..+...|..++|.+.|..
T Consensus 633 -Lp~s~~~-~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~ 709 (799)
T KOG4162|consen 633 -LPSSTVL-PGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLV 709 (799)
T ss_pred -cCccccc-CCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHH
Confidence 0000000 0112 2345667777888999999998888887763 33677788888888899999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH--HHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 045674 523 MIDKGITPTAASFRALSIGLCLSGKVARACK--ILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDRE 596 (650)
Q Consensus 523 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 596 (650)
++..++. +.....+++.++.+.|+..-|.+ ++..+.+.+|.++++|..++.++.+.|+.++|.+.|..+.+..
T Consensus 710 Al~ldP~-hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 710 ALALDPD-HVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred HHhcCCC-CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 9986555 66788999999999998887877 9999999999999999999999999999999999999999875
No 68
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.58 E-value=3.7e-10 Score=108.57 Aligned_cols=455 Identities=13% Similarity=0.086 Sum_probs=252.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 045674 149 CYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLV 228 (650)
Q Consensus 149 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 228 (650)
....=++.+...|++++|.+...+++..+ +.+...+..-+.++.+.+++++|+.+.+.-... ..+.+.+.--.-+..
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEY 90 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHH
Confidence 33445566777888888888888888765 667777777777888888888888555443221 111111112223445
Q ss_pred hcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 045674 229 NSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQP-DKITYMTLIQACYLEGDFDSCL 307 (650)
Q Consensus 229 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~ 307 (650)
+.+..++|...++... +.+..+...-...+.+.|++++|+++|+.+.+.+.+. +...-..++.+-.. -.+.
T Consensus 91 rlnk~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~----l~~~ 162 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA----LQVQ 162 (652)
T ss_pred HcccHHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----hhHH
Confidence 7788888888887332 2244466666777888888888888888887765321 11111112211100 0110
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-------CCc------CH-HHHHHHHHHHHhcCCH
Q 045674 308 SLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRG-------CQP------NV-AIYTALIDSYAKLGSM 373 (650)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------~~~------~~-~~~~~l~~~~~~~~~~ 373 (650)
+.+..... ...+-..+......++..|++.+|+++++...+.+ -.. +. .+--.|..++...|+.
T Consensus 163 -~~q~v~~v-~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt 240 (652)
T KOG2376|consen 163 -LLQSVPEV-PEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQT 240 (652)
T ss_pred -HHHhccCC-CcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcch
Confidence 11111111 11122233334556667888888888888773221 000 00 1223456677788999
Q ss_pred HHHHHHHHHHHHCCCCCCHHhH----HHHHHHHHhcCCHH--HHHHHHHHHHHCCCC----------CCHHHH-HHHHHH
Q 045674 374 NEAINIFERMKYEGVEPDEVTY----GVIISGLCKNERLE--EAMQYFEFCRANGVA----------VNAMFY-SSLIDG 436 (650)
Q Consensus 374 ~~A~~~~~~~~~~~~~p~~~~~----~~l~~~~~~~g~~~--~a~~~~~~~~~~~~~----------~~~~~~-~~l~~~ 436 (650)
++|..+|..++.... +|.... |.++. +....++- .++..++........ -..... +.++.+
T Consensus 241 ~ea~~iy~~~i~~~~-~D~~~~Av~~NNLva-~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l 318 (652)
T KOG2376|consen 241 AEASSIYVDIIKRNP-ADEPSLAVAVNNLVA-LSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLAL 318 (652)
T ss_pred HHHHHHHHHHHHhcC-CCchHHHHHhcchhh-hccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998887643 243222 22221 22211211 122222211111000 001111 112222
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 045674 437 LGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALA-KCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEE 515 (650)
Q Consensus 437 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 515 (650)
| .+..+.+.+........ .|....-..+..++. +...+..+.+++...-+..+.......-.++......|+++.
T Consensus 319 ~--tnk~~q~r~~~a~lp~~--~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~ 394 (652)
T KOG2376|consen 319 F--TNKMDQVRELSASLPGM--SPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEV 394 (652)
T ss_pred H--hhhHHHHHHHHHhCCcc--CchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHH
Confidence 2 33334444443332221 233332222333322 223477778887777766444345556666777778899999
Q ss_pred HHHHHH--------HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-------CCCcHHHHHHHHHHHHHcC
Q 045674 516 ALKLWD--------MMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPK-------GIIPETAFEDMITCLCKTG 580 (650)
Q Consensus 516 A~~~~~--------~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g 580 (650)
|++++. .+.+.+.. +.+...+...+.+.++.+.|..++.+++.. ...-...+..++..-.+.|
T Consensus 395 A~~il~~~~~~~~ss~~~~~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G 472 (652)
T KOG2376|consen 395 ALEILSLFLESWKSSILEAKHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHG 472 (652)
T ss_pred HHHHHHHHhhhhhhhhhhhccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcC
Confidence 999988 44444333 345555666677777766666666666532 1112344555666667789
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 045674 581 RIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHS 626 (650)
Q Consensus 581 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 626 (650)
+-++|..+++++++.+ ++|..+...++.+|... +.+.|..+-+.
T Consensus 473 ~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 473 NEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred chHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 9999999999999876 78888888888888776 66777766543
No 69
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.58 E-value=8.1e-13 Score=116.93 Aligned_cols=234 Identities=11% Similarity=0.070 Sum_probs=198.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 045674 358 AIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGL 437 (650)
Q Consensus 358 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 437 (650)
.--+.+..+|.+.|.+.+|.+.|+...+. .|-..||..+-+.|.+..+.+.|+.++.+-.+..+. ++.....+.+.+
T Consensus 224 wWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~-~VT~l~g~ARi~ 300 (478)
T KOG1129|consen 224 WWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPF-DVTYLLGQARIH 300 (478)
T ss_pred HHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCc-hhhhhhhhHHHH
Confidence 33356888999999999999999888776 566778888889999999999999999888776443 555556678888
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 045674 438 GKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEAL 517 (650)
Q Consensus 438 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 517 (650)
...++.++|.++++...+.. +.++.....+...|.-.++.+.|+..+++++..|.. +...|+.++-+|...++++-++
T Consensus 301 eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L 378 (478)
T KOG1129|consen 301 EAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVL 378 (478)
T ss_pred HHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhH
Confidence 88999999999999998875 677777778888888899999999999999999887 8888999999999999999999
Q ss_pred HHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 045674 518 KLWDMMIDKGITPT--AASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDR 595 (650)
Q Consensus 518 ~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 595 (650)
..|++++..--.|+ ...|..++......|++.-|.+.|+-++..+++..+.+++|+..-.+.|++++|..++..+...
T Consensus 379 ~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 379 PSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 99999886533333 4578888888888999999999999999998889999999999999999999999999988765
Q ss_pred C
Q 045674 596 E 596 (650)
Q Consensus 596 ~ 596 (650)
.
T Consensus 459 ~ 459 (478)
T KOG1129|consen 459 M 459 (478)
T ss_pred C
Confidence 3
No 70
>PRK12370 invasion protein regulator; Provisional
Probab=99.56 E-value=2.5e-12 Score=133.65 Aligned_cols=218 Identities=15% Similarity=0.033 Sum_probs=176.6
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 045674 406 ERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGK---------AGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCG 476 (650)
Q Consensus 406 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 476 (650)
+.+++|...|++..+..+. +...|..+..++.. .+++++|...++++++.+ |.+...+..++.++...|
T Consensus 275 ~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 3468999999999988765 56667666665542 245899999999999986 778899999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 045674 477 KLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILD 556 (650)
Q Consensus 477 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 556 (650)
++++|+..|+++.+.++. +...+..++.++...|++++|+..++++++..+. +...+..++..+...|++++|...++
T Consensus 353 ~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 999999999999998654 6778888999999999999999999999997655 33334445556777899999999999
Q ss_pred HHhhCC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045674 557 ELAPKG-IIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGV 630 (650)
Q Consensus 557 ~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 630 (650)
++.+.. +.++..+..++.++...|++++|...++++.... +.+......+...|...| ++|...++++++.
T Consensus 431 ~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 431 ELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred HHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 998775 4577888999999999999999999999987653 344555666777777777 4788877776663
No 71
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=4e-11 Score=114.01 Aligned_cols=229 Identities=19% Similarity=0.141 Sum_probs=134.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH-------HHHH
Q 045674 397 VIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCY-------NVLI 469 (650)
Q Consensus 397 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-------~~l~ 469 (650)
.+..+..+..+++.|++.+....... -+...++....+|...|.+.++...-...++.| .....-| ..++
T Consensus 229 ~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~g-re~rad~klIak~~~r~g 305 (539)
T KOG0548|consen 229 ELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVG-RELRADYKLIAKALARLG 305 (539)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHh-HHHHHHHHHHHHHHHHhh
Confidence 34444444555555555555554443 133344444445555555555444444444433 1111111 1233
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 045674 470 DALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVA 549 (650)
Q Consensus 470 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 549 (650)
.+|.+.++++.++..|.+.....-.|+. ..+....+++....+...-.++.- ..-...-+..+.+.|++.
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy~ 375 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDYP 375 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCHH
Confidence 4555667777777777776554322221 223344455555554444333322 222333466677778888
Q ss_pred HHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045674 550 RACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIG 629 (650)
Q Consensus 550 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 629 (650)
.|++.|.++++.+|.|...|.+.+-||.+.|.+..|++-.+..++.+ ++....|..-+.++....+|++|.+.|++.++
T Consensus 376 ~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 376 EAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888888888777788888888888888888888888888887776 66666777777777777788888888888887
Q ss_pred CCCCChhhhh
Q 045674 630 VGYDRMGSIK 639 (650)
Q Consensus 630 ~~~~~~~~~~ 639 (650)
..+..-..+.
T Consensus 455 ~dp~~~e~~~ 464 (539)
T KOG0548|consen 455 LDPSNAEAID 464 (539)
T ss_pred cCchhHHHHH
Confidence 7765444433
No 72
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.53 E-value=7.1e-10 Score=111.07 Aligned_cols=297 Identities=13% Similarity=0.101 Sum_probs=161.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 045674 149 CYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLV 228 (650)
Q Consensus 149 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 228 (650)
.....+.++...|++++|+.+++..... +..........+..+.+.|+.++|..+|..+++.++ .|..-|..+..++.
T Consensus 6 ~lLY~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP-dn~~Yy~~L~~~~g 83 (517)
T PF12569_consen 6 LLLYKNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP-DNYDYYRGLEEALG 83 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHh
Confidence 3444566677788888888888775543 344455666777778888888888888888887642 24444444444442
Q ss_pred hc-----CChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCh-hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 045674 229 NS-----MFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKT-QKAMEKFRAMEARNVQPDKITYMTLIQACYLEGD 302 (650)
Q Consensus 229 ~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 302 (650)
.. .+.+....+++.+... -|...+...+.-.+..-..+ ..+..++..+...|++ .+|..|-..|.....
T Consensus 84 ~~~~~~~~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K 158 (517)
T PF12569_consen 84 LQLQLSDEDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEK 158 (517)
T ss_pred hhcccccccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhH
Confidence 22 2455666677766543 23222222221111111122 2345556666666654 345555555554444
Q ss_pred HHHHHHHHHHHHHCC--------------CCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcC-HHHHHHHHH
Q 045674 303 FDSCLSLYHEMDEKG--------------IEIPS--HAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPN-VAIYTALID 365 (650)
Q Consensus 303 ~~~a~~~~~~~~~~~--------------~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~ 365 (650)
.+-..+++..+.... -+|.. .++..+...|-..|++++|.++++..++. .|+ +..|..-++
T Consensus 159 ~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~Kar 236 (517)
T PF12569_consen 159 AAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKAR 236 (517)
T ss_pred HHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHH
Confidence 444444444443220 01122 23345556666666666666666666665 233 445555666
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--------HHHHHHHHHH
Q 045674 366 SYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNA--------MFYSSLIDGL 437 (650)
Q Consensus 366 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--------~~~~~l~~~~ 437 (650)
.+-+.|++.+|.+.++........ |...=+-....+.+.|++++|.+++....+.+..+.. ......+.+|
T Consensus 237 ilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~ 315 (517)
T PF12569_consen 237 ILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAY 315 (517)
T ss_pred HHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHH
Confidence 666666666666666666654322 4444444555566666666666666655544422211 1112334556
Q ss_pred HHcCCHHHHHHHHHHHHH
Q 045674 438 GKAGRVDEAEELFEEMVE 455 (650)
Q Consensus 438 ~~~~~~~~A~~~~~~~~~ 455 (650)
.+.|++..|++.|..+.+
T Consensus 316 ~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 316 LRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 666666666666555544
No 73
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.52 E-value=2.1e-11 Score=113.25 Aligned_cols=200 Identities=15% Similarity=0.106 Sum_probs=143.8
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 045674 392 EVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDA 471 (650)
Q Consensus 392 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 471 (650)
...+..+...+...|++++|.+.++++.+..+. +...+..++..+...|++++|.+.+++..+.. +.+...+..++..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPD-DYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 344555666666777777777777766665433 45666667777777777777777777777764 4566677777777
Q ss_pred HHHcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 045674 472 LAKCGKLDEALALFKRMEDEGC-DQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVAR 550 (650)
Q Consensus 472 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 550 (650)
+...|++++|.+.++++..... ......+..++.++...|++++|...+++..+..+. +...+..++..+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHH
Confidence 7788888888888887776422 123445666777778888888888888888775433 45677778888888888888
Q ss_pred HHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 045674 551 ACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVD 594 (650)
Q Consensus 551 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 594 (650)
|..+++++.+..+.+...+..++..+...|+.++|..+++.+.+
T Consensus 188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 88888888877555667777778888888888888888777654
No 74
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.51 E-value=4.1e-12 Score=107.49 Aligned_cols=203 Identities=14% Similarity=0.056 Sum_probs=173.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 045674 428 MFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGM 507 (650)
Q Consensus 428 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 507 (650)
.+...|.-.|...|+...|..-+++.++.+ |.+..+|..+...|.+.|+.+.|.+.|++..+..+. +..+.|..+.-+
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FL 113 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHH
Confidence 456677888999999999999999999986 777888999999999999999999999999988665 777888899889
Q ss_pred HhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHH
Q 045674 508 FKEHRNEEALKLWDMMIDKG-ITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEAC 586 (650)
Q Consensus 508 ~~~~~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 586 (650)
|..|++++|...|+++...- ..--..+|..++.+..+.|+.+.|.++|++.++.++..+.....+.....+.|++-.|.
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHH
Confidence 99999999999999998642 22235688889999999999999999999999999998888899999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 045674 587 KLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYD 633 (650)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 633 (650)
-+++.....+ ..+...+...+..-...|+-+.|-++=.++...=|.
T Consensus 194 ~~~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~ 239 (250)
T COG3063 194 LYLERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPY 239 (250)
T ss_pred HHHHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 9999998887 588888888888888999988888776666655443
No 75
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=1.3e-09 Score=104.84 Aligned_cols=439 Identities=12% Similarity=0.054 Sum_probs=257.8
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcC
Q 045674 187 SLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVG 266 (650)
Q Consensus 187 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 266 (650)
+=+..+...|++++|++...++...+ +.+...+..-+.++++.+.+++|..+.+.-... ..+...+.--.-+..+.+
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrln 93 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLN 93 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcc
Confidence 34456678899999999999999876 557777888888899999999999666543311 111111112223344789
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHH
Q 045674 267 KTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEI-PSHAYNLVIGGLCKVGKCIEGHAIF 345 (650)
Q Consensus 267 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~ 345 (650)
..++|+..++-.. +.+..+...-...+.+.|++++|+++|+.+.+.+.+. +...-..++..-. .-.+. +.
T Consensus 94 k~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a----~l~~~-~~ 164 (652)
T KOG2376|consen 94 KLDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA----ALQVQ-LL 164 (652)
T ss_pred cHHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH----hhhHH-HH
Confidence 9999999988332 2244577777889999999999999999998875431 1112222221111 01111 12
Q ss_pred HHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCCH------H-hHHHHHHHHHhcCCHHHH
Q 045674 346 ESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYE-------GVEPDE------V-TYGVIISGLCKNERLEEA 411 (650)
Q Consensus 346 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~p~~------~-~~~~l~~~~~~~g~~~~a 411 (650)
+..... ...+...+......+...|++.+|+++++...+. +-.-+. . .-..+..++...|+-++|
T Consensus 165 q~v~~v-~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea 243 (652)
T KOG2376|consen 165 QSVPEV-PEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEA 243 (652)
T ss_pred HhccCC-CcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 211111 1112333344667788899999999999988221 111111 1 123345567789999999
Q ss_pred HHHHHHHHHCCCCCCHHH----HHHHHHHHHHcCC-HH-HHHHHHHHHHHcC-------C---CCCHHHH-HHHHHHHHH
Q 045674 412 MQYFEFCRANGVAVNAMF----YSSLIDGLGKAGR-VD-EAEELFEEMVEKG-------C---PRDSYCY-NVLIDALAK 474 (650)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~-~~-~A~~~~~~~~~~~-------~---~~~~~~~-~~l~~~~~~ 474 (650)
..++..+++..+. |... -|.++.+ ....+ ++ .++..++...... + .-..... +.++..|
T Consensus 244 ~~iy~~~i~~~~~-D~~~~Av~~NNLva~-~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~-- 319 (652)
T KOG2376|consen 244 SSIYVDIIKRNPA-DEPSLAVAVNNLVAL-SKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF-- 319 (652)
T ss_pred HHHHHHHHHhcCC-CchHHHHHhcchhhh-ccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 9999999888654 4322 2222222 11111 11 1222222111110 0 0011111 2222222
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 045674 475 CGKLDEALALFKRMEDEGCDQTVYTYTILINGM-FKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACK 553 (650)
Q Consensus 475 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 553 (650)
.+..+.+.++....... .|....-+.+..+. ++...+.++.+++....+..+.-...+....++.....|+++.|++
T Consensus 320 tnk~~q~r~~~a~lp~~--~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~ 397 (652)
T KOG2376|consen 320 TNKMDQVRELSASLPGM--SPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALE 397 (652)
T ss_pred hhhHHHHHHHHHhCCcc--CchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHH
Confidence 34444555444443322 33433333333333 2333678888998888876555445666777888899999999999
Q ss_pred HHH--------HHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCCHHHHHHHHHHHHhcCCHHH
Q 045674 554 ILD--------ELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDR------EREIPGKIRTALINALRKAGNADL 619 (650)
Q Consensus 554 ~~~--------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~ 619 (650)
++. .+.+.+ ..+.+...+...+.+.++.+-|..++.++++. +-..-...+..++..-.+.|+.++
T Consensus 398 il~~~~~~~~ss~~~~~-~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~e 476 (652)
T KOG2376|consen 398 ILSLFLESWKSSILEAK-HLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEE 476 (652)
T ss_pred HHHHHhhhhhhhhhhhc-cChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHH
Confidence 999 443332 14566677777788877766666666665532 101122344455566677899999
Q ss_pred HHHHHHHHHHCCCCChhhhhhhhccc
Q 045674 620 AIKLMHSKIGVGYDRMGSIKRRVKFR 645 (650)
Q Consensus 620 A~~~~~~~~~~~~~~~~~~~~~~~~~ 645 (650)
|..+++++.+..+....++-.+|.-.
T Consensus 477 a~s~leel~k~n~~d~~~l~~lV~a~ 502 (652)
T KOG2376|consen 477 ASSLLEELVKFNPNDTDLLVQLVTAY 502 (652)
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 99999999998887766666665433
No 76
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.49 E-value=1.9e-10 Score=115.08 Aligned_cols=131 Identities=21% Similarity=0.177 Sum_probs=100.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHH
Q 045674 499 TYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCK 578 (650)
Q Consensus 499 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 578 (650)
++..+...|...|++++|++++++++++.+. .+..|..-++.+-+.|++.+|.+.++.+.+.+..|..+-+..+..+.+
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LR 274 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLR 274 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHH
Confidence 4455667777888888999988888887443 467788888888888999999999998888888788887888888888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCH------HHH--HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045674 579 TGRIKEACKLADGIVDREREIPG------KIR--TALINALRKAGNADLAIKLMHSKIGV 630 (650)
Q Consensus 579 ~g~~~~A~~~~~~~~~~~~~~~~------~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~ 630 (650)
.|++++|.+++....+.+..+.. .+| ...+.+|.+.|++..|++.|..+.+.
T Consensus 275 a~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 275 AGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred CCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 89999998888888765532211 233 34577888889999888888877653
No 77
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.48 E-value=6.1e-11 Score=116.99 Aligned_cols=237 Identities=20% Similarity=0.123 Sum_probs=167.2
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----C--C
Q 045674 393 VTYGVIISGLCKNERLEEAMQYFEFCRAN-----GV-AVNA-MFYSSLIDGLGKAGRVDEAEELFEEMVEK-----G--C 458 (650)
Q Consensus 393 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~--~ 458 (650)
.+...+...|...|+++.|..+++...+. |. .+.. ...+.+...|...+++++|..+|++++.. | .
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34455666777777777777777655443 11 1122 22334667788888888888888888762 2 1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCC-CCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CC
Q 045674 459 PRDSYCYNVLIDALAKCGKLDEALALFKRMEDE-----GCD-QTV-YTYTILINGMFKEHRNEEALKLWDMMIDK---GI 528 (650)
Q Consensus 459 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~-~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~ 528 (650)
+.-..+++.|...|.+.|++++|...++++.+. +.. |.+ ..++.++..+...+++++|..++++..+. -+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 222356777888888999988888887776431 111 222 23556667788899999999998877642 12
Q ss_pred CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC----C-C---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-
Q 045674 529 TPT----AASFRALSIGLCLSGKVARACKILDELAPKG----I-I---PETAFEDMITCLCKTGRIKEACKLADGIVDR- 595 (650)
Q Consensus 529 ~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~-~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 595 (650)
.++ ..++..|++.|...|++++|.+++++++... . . ....++.++..|.+.+++.+|.++|.+....
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 222 3578899999999999999999999998532 1 1 3567888999999999999999988876543
Q ss_pred ---C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045674 596 ---E--REIPGKIRTALINALRKAGNADLAIKLMHSKIG 629 (650)
Q Consensus 596 ---~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 629 (650)
| .+.-..+|..|+.+|...|++++|+++.+.++.
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 2 122346788999999999999999999998873
No 78
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.48 E-value=5.7e-11 Score=100.69 Aligned_cols=199 Identities=15% Similarity=0.074 Sum_probs=150.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 045674 394 TYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALA 473 (650)
Q Consensus 394 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 473 (650)
+...+.-.|...|+...|..-+++.++.++. +..++..+...|.+.|+.+.|.+.|+..++.. |.+..+.|..+..+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 4556666788888888888888888887765 67778888888888888888888888888875 667778888888888
Q ss_pred HcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 045674 474 KCGKLDEALALFKRMEDEGC-DQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARAC 552 (650)
Q Consensus 474 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 552 (650)
..|++++|...|++....-. ..-..+|..++.+..+.|+.+.|...|++.++..+. .......+.......|++..|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHH
Confidence 88888888888888876411 123456777777777888888888888888876544 4556667778888888888888
Q ss_pred HHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 045674 553 KILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDR 595 (650)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 595 (650)
.+++.....+....+.+...++.-...|+.+.|.++=..+...
T Consensus 194 ~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 194 LYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 8888888777667777777777777888877776665555443
No 79
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.46 E-value=1.3e-09 Score=109.60 Aligned_cols=101 Identities=16% Similarity=0.144 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHH
Q 045674 533 ASFRALSIGLCLSGKVARACKILDELAPKGII---PETAFEDMITCLCKTGRIKEACKLADGIVDREREIP--GKIRTAL 607 (650)
Q Consensus 533 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l 607 (650)
..|..++..+....+.+.|..+.++....... +..-+..+.+.+.+.+....+.++++++.+.-...+ ..++..+
T Consensus 492 g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~ 571 (1088)
T KOG4318|consen 492 GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPL 571 (1088)
T ss_pred hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHH
Confidence 45667777777888888888888887654332 555667788888888888888888887765421112 3344455
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCC
Q 045674 608 INALRKAGNADLAIKLMHSKIGVGYD 633 (650)
Q Consensus 608 ~~~~~~~g~~~~A~~~~~~~~~~~~~ 633 (650)
.+.....|+.+.-.++.+-+...|+.
T Consensus 572 lns~a~agqqe~Lkkl~d~lvslgl~ 597 (1088)
T KOG4318|consen 572 LNSGAPAGQQEKLKKLADILVSLGLS 597 (1088)
T ss_pred HhhhhhccCHHHHHHHHHHHHHhhhh
Confidence 66667777777777776666655553
No 80
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.46 E-value=1e-10 Score=111.10 Aligned_cols=233 Identities=15% Similarity=0.002 Sum_probs=154.4
Q ss_pred CCHHHHHHHHHHHHHCC-CCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 045674 371 GSMNEAINIFERMKYEG-VEPD--EVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAE 447 (650)
Q Consensus 371 ~~~~~A~~~~~~~~~~~-~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 447 (650)
+..+.++.-+.++.... ..|+ ...|..+...+...|+.++|...|++..+..+. +...|+.++..+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHH
Confidence 45666777776666431 1222 345666777788888888888888888887665 6788888888888889999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 045674 448 ELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKG 527 (650)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 527 (650)
..|+..++.. |.+...+..++.++...|++++|.+.|++..+..+. +. ........+...+++++|...+++.....
T Consensus 119 ~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~-~~-~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 119 EAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPN-DP-YRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CH-HHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 8888888864 556778888888888889999999988888876443 22 11222222345678888988887765432
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh-------CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 045674 528 ITPTAASFRALSIGLCLSGKVARACKILDELAP-------KGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIP 600 (650)
Q Consensus 528 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 600 (650)
.++... ........|+..++ +.++.+.+ .++...++|..++.++...|++++|+..|+++++.+.+..
T Consensus 196 -~~~~~~---~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~ 270 (296)
T PRK11189 196 -DKEQWG---WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNF 270 (296)
T ss_pred -CccccH---HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchH
Confidence 222211 12233345655443 23333332 2223457888999999999999999999999998763333
Q ss_pred HHHHHHHHHHHH
Q 045674 601 GKIRTALINALR 612 (650)
Q Consensus 601 ~~~~~~l~~~~~ 612 (650)
.+....++....
T Consensus 271 ~e~~~~~~e~~~ 282 (296)
T PRK11189 271 VEHRYALLELAL 282 (296)
T ss_pred HHHHHHHHHHHH
Confidence 333344444433
No 81
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.45 E-value=6.3e-11 Score=112.55 Aligned_cols=221 Identities=15% Similarity=-0.001 Sum_probs=164.9
Q ss_pred cCCHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 045674 405 NERLEEAMQYFEFCRANGV---AVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEA 481 (650)
Q Consensus 405 ~g~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 481 (650)
.+..+.++..+.+++.... ......|..++..|...|+.++|...|++.++.. |.+...|+.++..+...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 4566778888887775422 2234568888889999999999999999999985 77899999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 045674 482 LALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPK 561 (650)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 561 (650)
...|++.++..+. +..+|..++.++...|++++|++.+++..+..+. +. ........+...++.++|...+.+....
T Consensus 118 ~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~-~~-~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 118 YEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPN-DP-YRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CH-HHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 9999999987654 6778888999999999999999999999986544 32 1112222234578899999999876644
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 045674 562 GIIPETAFEDMITCLCKTGRIKEACKLADGIVDR---ER---EIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYD 633 (650)
Q Consensus 562 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 633 (650)
...+ .|. .+.+....|+..++ +.++.+.+. .. +....+|..++..+.+.|++++|+..|+++++.++.
T Consensus 195 ~~~~--~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~ 268 (296)
T PRK11189 195 LDKE--QWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVY 268 (296)
T ss_pred CCcc--ccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence 3222 222 23444456665444 244444321 10 224568999999999999999999999999998753
No 82
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.40 E-value=3.1e-09 Score=95.30 Aligned_cols=318 Identities=12% Similarity=0.061 Sum_probs=167.1
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHH
Q 045674 251 DVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSH-AYNLVI 329 (650)
Q Consensus 251 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~ 329 (650)
++.-..-+...+...|++.+|+..|....+.+ +.+-.++..-...|...|+-..|+.-+...++. .||-. ....-.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg 113 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhc
Confidence 34445555666666666666666666665532 112222333344555566666666655555554 22321 112223
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHH
Q 045674 330 GGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLE 409 (650)
Q Consensus 330 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 409 (650)
..+.+.|.+++|..-|+.+++.. |+..+ ...++.+.-..++-. .....+..+...|+..
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~--~s~~~---~~eaqskl~~~~e~~----------------~l~~ql~s~~~~GD~~ 172 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHE--PSNGL---VLEAQSKLALIQEHW----------------VLVQQLKSASGSGDCQ 172 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcC--CCcch---hHHHHHHHHhHHHHH----------------HHHHHHHHHhcCCchh
Confidence 34555666666666666555542 11100 000111100001111 1122233344556666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 045674 410 EAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRME 489 (650)
Q Consensus 410 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 489 (650)
.|+..+..+++..+- +...|..-..+|...|++..|+.-++...+.. ..+...+..+...+...|+.+.++...++.+
T Consensus 173 ~ai~~i~~llEi~~W-da~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL 250 (504)
T KOG0624|consen 173 NAIEMITHLLEIQPW-DASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECL 250 (504)
T ss_pred hHHHHHHHHHhcCcc-hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 666666666665433 55566666666666666666666666655543 4555566666666666666666666666666
Q ss_pred HcCCCCCHHH----HHHH---------HHHHHhcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCHHHHHH
Q 045674 490 DEGCDQTVYT----YTIL---------INGMFKEHRNEEALKLWDMMIDKGITPTAA---SFRALSIGLCLSGKVARACK 553 (650)
Q Consensus 490 ~~~~~~~~~~----~~~l---------~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~A~~ 553 (650)
+.+ ||... |-.| +......++|.++++-.+...+..+.-... .+..+-.++...|++.+|+.
T Consensus 251 Kld--pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiq 328 (504)
T KOG0624|consen 251 KLD--PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQ 328 (504)
T ss_pred ccC--cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHH
Confidence 542 23211 1000 111234566666666666666553331111 23344455556677777777
Q ss_pred HHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 045674 554 ILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDRE 596 (650)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 596 (650)
.-.++++..+.+..++..-+.+|.-...+++|+.-|+++.+.+
T Consensus 329 qC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 329 QCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 7777777766677777777777777777777777777777665
No 83
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=4.8e-09 Score=100.17 Aligned_cols=238 Identities=14% Similarity=0.050 Sum_probs=160.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-------H
Q 045674 360 YTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYS-------S 432 (650)
Q Consensus 360 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-------~ 432 (650)
...++....+..+++.|++.+....+.. -+..-++....+|...|.+.+.+...+...+.|-. ...-|+ .
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHH
Confidence 3456777777788888888888877653 34445566666777888777777777666655433 222222 2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 045674 433 LIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHR 512 (650)
Q Consensus 433 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 512 (650)
+..+|.+.++++.|+..|.+.+.....|+ ...+....+++.+..+...-.++.. ..-...-+..+.+.|+
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~---------~ls~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gd 373 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPD---------LLSKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGD 373 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHH---------HHHHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccC
Confidence 34466667788888888888776542322 2223344455555544443333221 1122223566778888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045674 513 NEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGI 592 (650)
Q Consensus 513 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 592 (650)
+..|+..|.++++..+. |...|...+-+|.+.|.+..|++-.+..++.+|.....|..-+.++....+|++|.+.|.+.
T Consensus 374 y~~Av~~YteAIkr~P~-Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~ea 452 (539)
T KOG0548|consen 374 YPEAVKHYTEAIKRDPE-DARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEA 452 (539)
T ss_pred HHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888887654 77788888888888888888888888888888887888888888888888888898888888
Q ss_pred HHcCCCCCHHHHHHHHHHHH
Q 045674 593 VDREREIPGKIRTALINALR 612 (650)
Q Consensus 593 ~~~~~~~~~~~~~~l~~~~~ 612 (650)
++.+ +.+..+...+..+..
T Consensus 453 le~d-p~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 453 LELD-PSNAEAIDGYRRCVE 471 (539)
T ss_pred HhcC-chhHHHHHHHHHHHH
Confidence 8876 445555555554443
No 84
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.38 E-value=1.3e-08 Score=103.79 Aligned_cols=454 Identities=12% Similarity=0.000 Sum_probs=230.0
Q ss_pred chhhhHHHHHHhhcCCCChH-HHHHHHHhccCCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 045674 93 DMEANLDSFCRKFLIKLSPN-FVSFVLRNHDVSKRPNVGLRLFTWAARQKKYSHNLECYISLIDCLALCGDVDRVRLVFN 171 (650)
Q Consensus 93 ~~~~al~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 171 (650)
+...++..+.++.....+-. .+..+-..+....+...|.+.|+.+... ...+..+...++..|++..+++.|..+.-
T Consensus 473 ~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeL--Datdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFEL--DATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 34555666665544433321 2222223333333566677777766543 23455666677777777777777777744
Q ss_pred HHHHCCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCC
Q 045674 172 ELKEKGFLMT--VSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMFIESSELVFKVMENGKVG 249 (650)
Q Consensus 172 ~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~ 249 (650)
..-+.. +.- ...|..+.-.|...++...|+.-|+......+ .|...|..+..+|..+|++..|.++|.++... .
T Consensus 551 ~~~qka-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--r 626 (1238)
T KOG1127|consen 551 RAAQKA-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKASLL--R 626 (1238)
T ss_pred HHhhhc-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--C
Confidence 443332 111 12233344456667777777777777776542 36777778888888888888888888777654 2
Q ss_pred CC-hhhHHHHHHHHHHcCChhHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------
Q 045674 250 PD-VVTYNTMIKGYCKVGKTQKAMEKFRAMEARN------VQPDKITYMTLIQACYLEGDFDSCLSLYHEMDE------- 315 (650)
Q Consensus 250 ~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------- 315 (650)
|+ ...---.....+..|.+.+|+..+....... ...-..++..+...+...|-..++.+.++.-++
T Consensus 627 P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~ 706 (1238)
T KOG1127|consen 627 PLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLI 706 (1238)
T ss_pred cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 32 2222222344556677888877777665321 111122333333333333333333333332221
Q ss_pred CCCCCCHHHHHHHHHHH-----------------------HhcCCh---H---HHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 045674 316 KGIEIPSHAYNLVIGGL-----------------------CKVGKC---I---EGHAIFESMIRRGCQPNVAIYTALIDS 366 (650)
Q Consensus 316 ~~~~~~~~~~~~l~~~~-----------------------~~~g~~---~---~a~~~~~~~~~~~~~~~~~~~~~l~~~ 366 (650)
.....+...|..+...+ -..+.. + -+.+.+-.-++ ...+...|..|+..
T Consensus 707 h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGin 784 (1238)
T KOG1127|consen 707 HSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGIN 784 (1238)
T ss_pred HhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHH
Confidence 11111111111111111 111111 0 00011100011 01123345555555
Q ss_pred HHh--------cCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 045674 367 YAK--------LGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLG 438 (650)
Q Consensus 367 ~~~--------~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 438 (650)
|.+ ..+...|+..+.+.++.. ..+..+|+.+... ...|++.-+...|-+.....+. +..+|..+.-.+.
T Consensus 785 ylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~-~~~~W~NlgvL~l 861 (1238)
T KOG1127|consen 785 YLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPT-CHCQWLNLGVLVL 861 (1238)
T ss_pred HHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcccc-chhheeccceeEE
Confidence 544 122346777777766542 2256677776654 5556676666666555554443 6667777777788
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHHHhcCCHH
Q 045674 439 KAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMED----EGCDQTVYTYTILINGMFKEHRNE 514 (650)
Q Consensus 439 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~ 514 (650)
+..+++.|...|....... |.|...|..........|+.-++..+|..--. .|-.++..-|..-.......|+.+
T Consensus 862 ~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e 940 (1238)
T KOG1127|consen 862 ENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIE 940 (1238)
T ss_pred ecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchH
Confidence 8888888888888877764 66667776666666667777777777665211 122233333333333333444444
Q ss_pred HHHHHHHH----------HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 045674 515 EALKLWDM----------MIDKGITPTAASFRALSIGLCLSGKVARACKILDELA 559 (650)
Q Consensus 515 ~A~~~~~~----------~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 559 (650)
+-+...++ ... +...+...|...+...-+.+.+.+|.+...+++
T Consensus 941 ~~I~t~~ki~sAs~al~~yf~-~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli 994 (1238)
T KOG1127|consen 941 ESINTARKISSASLALSYYFL-GHPQLCFAYAANGSTLEHLEEYRAALELATRLI 994 (1238)
T ss_pred HHHHHhhhhhhhHHHHHHHHh-cCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 33322222 121 122244455555555555555655555555443
No 85
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.37 E-value=5.9e-10 Score=110.15 Aligned_cols=235 Identities=19% Similarity=0.188 Sum_probs=145.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCC--C
Q 045674 360 YTALIDSYAKLGSMNEAINIFERMKYE-----GV-EPDEV-TYGVIISGLCKNERLEEAMQYFEFCRAN-----GVA--V 425 (650)
Q Consensus 360 ~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~-~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~--~ 425 (650)
...+...|...|++++|..+++...+. |. .|... ..+.+...|...+++++|..+|+++... |.. .
T Consensus 202 ~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~ 281 (508)
T KOG1840|consen 202 LRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPA 281 (508)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHH
Confidence 333555555555555555555544321 10 12222 2223555566666666666666655432 211 1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----C-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CC
Q 045674 426 NAMFYSSLIDGLGKAGRVDEAEELFEEMVEK-----G-CPRD-SYCYNVLIDALAKCGKLDEALALFKRMEDE-----GC 493 (650)
Q Consensus 426 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~ 493 (650)
-..+++.|..+|.+.|++++|...++++++. + ..+. ...++.++..++..+++++|..+++...+. |.
T Consensus 282 va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~ 361 (508)
T KOG1840|consen 282 VAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGE 361 (508)
T ss_pred HHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccc
Confidence 2345566666677777777777666665542 1 0111 123456667777788888888887766442 11
Q ss_pred C--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhh----
Q 045674 494 D--QTVYTYTILINGMFKEHRNEEALKLWDMMIDK-----G-ITP-TAASFRALSIGLCLSGKVARACKILDELAP---- 560 (650)
Q Consensus 494 ~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---- 560 (650)
. --..+++.|...|...|++++|.+++++++.. | ..+ ....++.++..|.+.+++++|.++|.+...
T Consensus 362 ~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~ 441 (508)
T KOG1840|consen 362 DNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKL 441 (508)
T ss_pred cchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Confidence 1 12457888888888899999999888888742 1 111 234677888888888888888888887653
Q ss_pred CCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 045674 561 KGII---PETAFEDMITCLCKTGRIKEACKLADGIVD 594 (650)
Q Consensus 561 ~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 594 (650)
.|+. ....|..|+.+|...|++++|.++.+.+..
T Consensus 442 ~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 442 CGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred hCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3444 346788899999999999999999888763
No 86
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.36 E-value=6.2e-10 Score=111.86 Aligned_cols=90 Identities=20% Similarity=0.260 Sum_probs=64.6
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCC
Q 045674 204 VWRSMKENGIEPSLYTYNFLMNGLVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNV 283 (650)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 283 (650)
++..+...|+.|+..||..++.-|+..|+++.|- +|..|.....+.+...++.++.+....++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 4455666677777777777777777777777777 7777766666667777777777777777766664
Q ss_pred CCCHHHHHHHHHHHHhcCCHHH
Q 045674 284 QPDKITYMTLIQACYLEGDFDS 305 (650)
Q Consensus 284 ~~~~~~~~~l~~~~~~~~~~~~ 305 (650)
.|...+|..|..+|...||...
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~ 101 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLIL 101 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHH
Confidence 4566777777777777777544
No 87
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.36 E-value=2.2e-08 Score=102.27 Aligned_cols=478 Identities=12% Similarity=0.005 Sum_probs=242.7
Q ss_pred CChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 045674 125 KRPNVGLRLFTWAARQKKYSHNLECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELLWV 204 (650)
Q Consensus 125 ~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 204 (650)
++...|+..|-.+.+.. +.-..+|..++..|...-+...|.+.|+.+-+.+ +.+...+......|++..+++.|..+
T Consensus 472 K~~~~al~ali~alrld--~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLD--VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred hhHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHH
Confidence 34566666666665542 2334577888888887778888888888888775 55677788888888888888888887
Q ss_pred HHHHHHCCCCCCHHH--HHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 045674 205 WRSMKENGIEPSLYT--YNFLMNGLVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARN 282 (650)
Q Consensus 205 ~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 282 (650)
.-...+.. +.-... |..+.-.+...++...|..-|+...... +.|...|..++.+|.+.|++..|.++|.+....
T Consensus 549 ~l~~~qka-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L- 625 (1238)
T KOG1127|consen 549 CLRAAQKA-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL- 625 (1238)
T ss_pred HHHHhhhc-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc-
Confidence 33332221 111112 2223334566778888888888887654 457888888888888888888888888887764
Q ss_pred CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----
Q 045674 283 VQPD-KITYMTLIQACYLEGDFDSCLSLYHEMDEKG------IEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRR---- 351 (650)
Q Consensus 283 ~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---- 351 (650)
.|+ ...-.......+..|.+.+++..+..+.... ..--..++..+...+...|-...+.+.++..++.
T Consensus 626 -rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~ 704 (1238)
T KOG1127|consen 626 -RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVS 704 (1238)
T ss_pred -CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 333 2333333445567888888888887765431 1111233334444444455555555555544432
Q ss_pred ---CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCH---H---HHHHHHHHHHHCC
Q 045674 352 ---GCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERL---E---EAMQYFEFCRANG 422 (650)
Q Consensus 352 ---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~---~---~a~~~~~~~~~~~ 422 (650)
....+...|-.+..+ ..+|-+... . .|+......+..-.-..+.. + -+.+.+-.-.+
T Consensus 705 l~h~~~~~~~~Wi~asda----------c~~f~q~e~-~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls-- 770 (1238)
T KOG1127|consen 705 LIHSLQSDRLQWIVASDA----------CYIFSQEEP-S-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS-- 770 (1238)
T ss_pred HHHhhhhhHHHHHHHhHH----------HHHHHHhcc-c-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--
Confidence 111122223222222 112222110 0 11111111111111111111 0 00011100000
Q ss_pred CCCCHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 045674 423 VAVNAMFYSSLIDGLGK--------AGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCD 494 (650)
Q Consensus 423 ~~~~~~~~~~l~~~~~~--------~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 494 (650)
...+...|..++..|.+ ..+...|+..+...++.. ..+..+|+.|... ...|++.-+.-.|-+-....+.
T Consensus 771 l~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~ 848 (1238)
T KOG1127|consen 771 LAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPT 848 (1238)
T ss_pred HhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcccc
Confidence 00012222223322222 112335566666665543 4455556655544 4445565555555555444332
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh--hCCCC---cHHHH
Q 045674 495 QTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELA--PKGII---PETAF 569 (650)
Q Consensus 495 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~---~~~~~ 569 (650)
...+|..+...+....+++.|...|.+.+...+. +...|..........|+.-++..+|..-. ..+-. ....|
T Consensus 849 -~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~-nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw 926 (1238)
T KOG1127|consen 849 -CHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPL-NLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYW 926 (1238)
T ss_pred -chhheeccceeEEecccHHHhhHHHHhhhhcCch-hhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHH
Confidence 4555666666666666666666666666654332 33344333333345566666666655522 11111 22223
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHH----------HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045674 570 EDMITCLCKTGRIKEACKLADGI----------VDREREIPGKIRTALINALRKAGNADLAIKLMHSKI 628 (650)
Q Consensus 570 ~~l~~~~~~~g~~~~A~~~~~~~----------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 628 (650)
.+........|+.++-+...+++ .. +.+....+|...+...-+.+.+.+|.++..+++
T Consensus 927 ~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~-~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli 994 (1238)
T KOG1127|consen 927 LCATEIHLQNGNIEESINTARKISSASLALSYYFL-GHPQLCFAYAANGSTLEHLEEYRAALELATRLI 994 (1238)
T ss_pred HHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHh-cCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444433332222 22 224445555555655666666666666555544
No 88
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.36 E-value=2.4e-07 Score=104.19 Aligned_cols=373 Identities=11% Similarity=-0.008 Sum_probs=204.5
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 045674 257 TMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVG 336 (650)
Q Consensus 257 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 336 (650)
.....+...|++.+|...+...... ..-..............|+++.+...++.+.......+..........+...|
T Consensus 346 raa~~~~~~g~~~~Al~~a~~a~d~--~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g 423 (903)
T PRK04841 346 AAAEAWLAQGFPSEAIHHALAAGDA--QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQH 423 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHCCCH--HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCC
Confidence 3344555666666665544433110 00001111222334456677766666655421111112222334444556677
Q ss_pred ChHHHHHHHHHHHHcCC------CcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HhHHHHHHHHHh
Q 045674 337 KCIEGHAIFESMIRRGC------QPN--VAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDE----VTYGVIISGLCK 404 (650)
Q Consensus 337 ~~~~a~~~~~~~~~~~~------~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~ 404 (650)
+++++...+....+.-- .+. ......+...+...|++++|...+++....-...+. ...+.+...+..
T Consensus 424 ~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~ 503 (903)
T PRK04841 424 RYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHC 503 (903)
T ss_pred CHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHH
Confidence 88888877776654310 111 112222344556778888888888776653111111 233445556677
Q ss_pred cCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCC---CCHHHHHHHHHHH
Q 045674 405 NERLEEAMQYFEFCRAN----GV-AVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEK----GCP---RDSYCYNVLIDAL 472 (650)
Q Consensus 405 ~g~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~---~~~~~~~~l~~~~ 472 (650)
.|++++|...+++.... +. ......+..+...+...|++++|...+++.... +.. .....+..+...+
T Consensus 504 ~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 583 (903)
T PRK04841 504 KGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLL 583 (903)
T ss_pred cCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 88888888887766532 11 111234445566677788888888887776552 211 1123344556666
Q ss_pred HHcCCHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHH---H-HHHHHHH
Q 045674 473 AKCGKLDEALALFKRMEDE----GCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKG--ITPTAAS---F-RALSIGL 542 (650)
Q Consensus 473 ~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~p~~~~---~-~~l~~~~ 542 (650)
...|++++|...+++.... +.......+..+...+...|++++|...++++.... ....... . ...+..+
T Consensus 584 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 663 (903)
T PRK04841 584 WEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYW 663 (903)
T ss_pred HHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHH
Confidence 7778888888887776542 111123334445556677888888888877775321 1101100 0 0112334
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHh
Q 045674 543 CLSGKVARACKILDELAPKGIIPE----TAFEDMITCLCKTGRIKEACKLADGIVDR----EREI-PGKIRTALINALRK 613 (650)
Q Consensus 543 ~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~ 613 (650)
...|+.+.|..++........... ..+..++.++...|++++|...+++++.. +... ...++..++.++..
T Consensus 664 ~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~ 743 (903)
T PRK04841 664 QMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQ 743 (903)
T ss_pred HHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence 457788888888776654322211 12456777778888888888888877654 1111 12355667777888
Q ss_pred cCCHHHHHHHHHHHHHCC
Q 045674 614 AGNADLAIKLMHSKIGVG 631 (650)
Q Consensus 614 ~g~~~~A~~~~~~~~~~~ 631 (650)
.|+.++|...+.++++..
T Consensus 744 ~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 744 QGRKSEAQRVLLEALKLA 761 (903)
T ss_pred cCCHHHHHHHHHHHHHHh
Confidence 888888888888887754
No 89
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.35 E-value=3.5e-08 Score=88.72 Aligned_cols=317 Identities=10% Similarity=0.058 Sum_probs=171.2
Q ss_pred HHHHHhcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCC
Q 045674 224 MNGLVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKIT-YMTLIQACYLEGD 302 (650)
Q Consensus 224 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~ 302 (650)
...+...|++..|+.-|...++.. +.+-.++..-...|...|+...|+.-+.+.++. +||-.. ...-...+.+.|.
T Consensus 45 Gk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~Ge 121 (504)
T KOG0624|consen 45 GKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQGE 121 (504)
T ss_pred HHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhccc
Confidence 334444455555555555544331 112222333334455555555555555555442 444321 1222334445555
Q ss_pred HHHHHHHHHHHHHCCCCCCH--------------HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 045674 303 FDSCLSLYHEMDEKGIEIPS--------------HAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYA 368 (650)
Q Consensus 303 ~~~a~~~~~~~~~~~~~~~~--------------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 368 (650)
++.|..-|+.++........ ......+..+...|+...|+.....+++..+ -|...|..-..+|.
T Consensus 122 le~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~-Wda~l~~~Rakc~i 200 (504)
T KOG0624|consen 122 LEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQP-WDASLRQARAKCYI 200 (504)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCc-chhHHHHHHHHHHH
Confidence 55555555555544221110 0111223334445666666666666665522 25555555566666
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 045674 369 KLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEE 448 (650)
Q Consensus 369 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 448 (650)
..|++..|+.-++...+..-. +..++.-+-..+...|+.+.++..+++.++.++. ...+. -.|- .+.+..+
T Consensus 201 ~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpd--HK~Cf---~~YK---klkKv~K 271 (504)
T KOG0624|consen 201 AEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKLDPD--HKLCF---PFYK---KLKKVVK 271 (504)
T ss_pred hcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcc--hhhHH---HHHH---HHHHHHH
Confidence 666666666655555443212 3344444455556666666666666666554332 21110 0011 1122222
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045674 449 LFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYT---YTILINGMFKEHRNEEALKLWDMMID 525 (650)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~~~~ 525 (650)
.++.|.+ ....++|.++++-.+...+..+...... +..+-.++...+++.+|++...++++
T Consensus 272 ~les~e~----------------~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~ 335 (504)
T KOG0624|consen 272 SLESAEQ----------------AIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD 335 (504)
T ss_pred HHHHHHH----------------HHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh
Confidence 2222221 3356778888888888877654423333 33445566788999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHH
Q 045674 526 KGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFE 570 (650)
Q Consensus 526 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 570 (650)
..+. |..++..-+.+|.-...+++|+.-|+.+.+.+..+..+-.
T Consensus 336 ~d~~-dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~re 379 (504)
T KOG0624|consen 336 IDPD-DVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRARE 379 (504)
T ss_pred cCch-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHH
Confidence 5332 5888988999999999999999999999998877655433
No 90
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.33 E-value=1.1e-10 Score=112.02 Aligned_cols=220 Identities=15% Similarity=0.109 Sum_probs=131.9
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 045674 404 KNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALA 483 (650)
Q Consensus 404 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 483 (650)
+.|++.+|.-.|+..++.++. +...|..|+......++-..|+..+++.++.+ |.+......|+..|...|.-.+|++
T Consensus 297 ~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 297 KNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred hcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHHHH
Confidence 344444444444444444333 44444444444444444444444444444443 3344444444444444444444444
Q ss_pred HHHHHHHcCCCCCHHHHHHHH-----------HHHHhcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 045674 484 LFKRMEDEGCDQTVYTYTILI-----------NGMFKEHRNEEALKLWDMMI-DKGITPTAASFRALSIGLCLSGKVARA 551 (650)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~l~-----------~~~~~~~~~~~A~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~g~~~~A 551 (650)
.++.-+...++ |..+. ..+.....+.+..++|-++. ..+..+|+.+...|+-.|.-.|++++|
T Consensus 375 ~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 375 MLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 44444332111 00000 01111122334444444444 444446777888888888888888888
Q ss_pred HHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 045674 552 CKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVG 631 (650)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 631 (650)
.+.|+.++...|.|..+|+.||-.+....+.++|+..|.++++.. |.-..++..++-+|...|.|++|.+.|-.++...
T Consensus 450 iDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq-P~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 450 VDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ-PGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC-CCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 888888888888888888888888888888888888888888874 4456677888888888888888888888877653
No 91
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.31 E-value=2.4e-08 Score=99.12 Aligned_cols=304 Identities=17% Similarity=0.071 Sum_probs=166.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CcCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHhHHHHHH
Q 045674 324 AYNLVIGGLCKVGKCIEGHAIFESMIRRGC-QPNV-AIYTALIDSYAKLGSMNEAINIFERMKYEGVEPD-EVTYGVIIS 400 (650)
Q Consensus 324 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~ 400 (650)
.+..+...+...|+.+.+...+....+... ..+. .........+...|++++|.++++++.+. .|+ ...+.. ..
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~-~~ 84 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD--YPRDLLALKL-HL 84 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHH-hH
Confidence 344444444445555554444444433211 1121 11112233455567777777777776654 232 223321 11
Q ss_pred HHH----hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 045674 401 GLC----KNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCG 476 (650)
Q Consensus 401 ~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 476 (650)
.+. ..+..+.+.+.+...... ..........+...+...|++++|...+++..+.. +.+...+..+..+|...|
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWAPE-NPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHHhcccccCchhHHHHHhccCcC-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcC
Confidence 222 233444444444431111 11133444456667777888888888888888764 556667777778888888
Q ss_pred CHHHHHHHHHHHHHcCCC-CC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHH-H--HHHHHHHhcCCHH
Q 045674 477 KLDEALALFKRMEDEGCD-QT--VYTYTILINGMFKEHRNEEALKLWDMMIDKGIT-PTAASF-R--ALSIGLCLSGKVA 549 (650)
Q Consensus 477 ~~~~A~~~~~~~~~~~~~-~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-p~~~~~-~--~l~~~~~~~g~~~ 549 (650)
++++|+..+++..+.... ++ ...|..+...+...|++++|..+++++...... +..... + .+.+-+...|...
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~ 242 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVD 242 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCC
Confidence 888888888877765321 22 234556677777888888888888887643221 111111 1 2333334445433
Q ss_pred HHHHH--H-HHHhhCCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--------CCHHHHHHHHHHHHhcCC
Q 045674 550 RACKI--L-DELAPKGII--PETAFEDMITCLCKTGRIKEACKLADGIVDRERE--------IPGKIRTALINALRKAGN 616 (650)
Q Consensus 550 ~A~~~--~-~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~g~ 616 (650)
.+.++ + .......+. ......+.+.++...|+.++|..+++.+...... .........+.++...|+
T Consensus 243 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~ 322 (355)
T cd05804 243 VGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGN 322 (355)
T ss_pred hHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCC
Confidence 33333 1 111111111 1222235777788888999999888887653311 012333455666788999
Q ss_pred HHHHHHHHHHHHHCCC
Q 045674 617 ADLAIKLMHSKIGVGY 632 (650)
Q Consensus 617 ~~~A~~~~~~~~~~~~ 632 (650)
+++|.+.+..++..+.
T Consensus 323 ~~~A~~~L~~al~~a~ 338 (355)
T cd05804 323 YATALELLGPVRDDLA 338 (355)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988753
No 92
>PLN02789 farnesyltranstransferase
Probab=99.30 E-value=4.8e-09 Score=99.27 Aligned_cols=228 Identities=11% Similarity=0.051 Sum_probs=162.7
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH--
Q 045674 402 LCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAG-RVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKL-- 478 (650)
Q Consensus 402 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-- 478 (650)
+...++.++|+..++++++.++. +..+|+.-..++...| ++++++..++++.+.. +.+..+|+....++.+.|+.
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~ 124 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAA 124 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhh
Confidence 33456677777777777776555 5556666666666666 5678888888887764 66667777776666666653
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CC----HHHH
Q 045674 479 DEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLS---GK----VARA 551 (650)
Q Consensus 479 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~----~~~A 551 (650)
++++.+++++++..++ +..+|+....++...|+++++++.++++++.++. +...|+..+.++.+. |. .+++
T Consensus 125 ~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~e 202 (320)
T PLN02789 125 NKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSE 202 (320)
T ss_pred HHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHH
Confidence 5677778788777655 7788888887788888888888888888877665 666676666665544 22 2567
Q ss_pred HHHHHHHhhCCCCcHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC------------
Q 045674 552 CKILDELAPKGIIPETAFEDMITCLCKT----GRIKEACKLADGIVDREREIPGKIRTALINALRKAG------------ 615 (650)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------------ 615 (650)
+.+..+++...|.+..+|+.+..++... ++..+|.+.+.++.+.+ +.+..++..|+..|....
T Consensus 203 l~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~~~~~~~~~~~~~~~ 281 (320)
T PLN02789 203 LKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCEGLQPTAEFRDTVDT 281 (320)
T ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHhhhccchhhhhhhhc
Confidence 8888888888888888898888888773 45567888888877754 566777888888887532
Q ss_pred ------CHHHHHHHHHHHHHCCCCChh
Q 045674 616 ------NADLAIKLMHSKIGVGYDRMG 636 (650)
Q Consensus 616 ------~~~~A~~~~~~~~~~~~~~~~ 636 (650)
..++|.+++..+. .++|..
T Consensus 282 ~~~~~~~~~~a~~~~~~l~--~~d~ir 306 (320)
T PLN02789 282 LAEELSDSTLAQAVCSELE--VADPMR 306 (320)
T ss_pred cccccccHHHHHHHHHHHH--hhCcHH
Confidence 3477888888883 445543
No 93
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.30 E-value=9.3e-09 Score=90.49 Aligned_cols=421 Identities=13% Similarity=0.027 Sum_probs=219.8
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhhHHH-HHHHH
Q 045674 184 AANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMFIESSELVFKVMENGKVGPDVVTYNT-MIKGY 262 (650)
Q Consensus 184 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~ 262 (650)
-+.+.+..+.+..+++.|++++....+.. +.+......|..+|....++..|...++++-.. .|...-|.. -...+
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSL 88 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHH
Confidence 36667777778888888888888877763 226666777778888888888888888888754 455444443 34666
Q ss_pred HHcCChhHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 045674 263 CKVGKTQKAMEKFRAMEARNVQPDK--ITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIE 340 (650)
Q Consensus 263 ~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 340 (650)
.+.+.+.+|+++...|... ++. .+...-.......+++..+..++++....| +..+.+.......+.|++++
T Consensus 89 Y~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEa 162 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEA 162 (459)
T ss_pred HHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHH
Confidence 7788888888888877642 122 122222233456778888888887765432 45556666666778888888
Q ss_pred HHHHHHHHHHc-CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHh----HHHHHHHHHhcCCHHHHHHHH
Q 045674 341 GHAIFESMIRR-GCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVT----YGVIISGLCKNERLEEAMQYF 415 (650)
Q Consensus 341 a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~----~~~l~~~~~~~g~~~~a~~~~ 415 (650)
|.+-|+...+. |.. ....|+ +.-+..+.|+++.|+++..+++++|++-.+.. -.-.+++- ..|+. ..+.
T Consensus 163 AvqkFqaAlqvsGyq-pllAYn-iALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvr-svgNt---~~lh 236 (459)
T KOG4340|consen 163 AVQKFQAALQVSGYQ-PLLAYN-LALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVR-SVGNT---LVLH 236 (459)
T ss_pred HHHHHHHHHhhcCCC-chhHHH-HHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchh-cccch---HHHH
Confidence 88888888875 444 344565 55566778888888888888888776421110 00000000 00000 0000
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 045674 416 EFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKG-CPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCD 494 (650)
Q Consensus 416 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 494 (650)
..+ -...++.-...+.+.++++.|.+.+-.|.-+. ...|+.+...+.-.-. .+++.+..+-+.-+...++-
T Consensus 237 ----~Sa---l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nPf 308 (459)
T KOG4340|consen 237 ----QSA---LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNPF 308 (459)
T ss_pred ----HHH---HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCCC
Confidence 000 01223333344555666666666555553221 1234555544432211 23344444444444444333
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHH-hcCCHHHHHHHHHHHhhCCCCcHHHHHHH
Q 045674 495 QTVYTYTILINGMFKEHRNEEALKLWDMMIDKGIT-PTAASFRALSIGLC-LSGKVARACKILDELAPKGIIPETAFEDM 572 (650)
Q Consensus 495 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 572 (650)
-..||..++-.||+..-++-|..++.+-...... .+...| .++.++. ..-..++|.+-++.+...- ........
T Consensus 309 -P~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly-~LLdaLIt~qT~pEea~KKL~~La~~l--~~kLRklA 384 (459)
T KOG4340|consen 309 -PPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLY-DLLDALITCQTAPEEAFKKLDGLAGML--TEKLRKLA 384 (459)
T ss_pred -ChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 2345555555566666666665555432211111 011111 1222222 2234445544444332210 00000000
Q ss_pred HHHHH-HcCC----HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCh
Q 045674 573 ITCLC-KTGR----IKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYDRM 635 (650)
Q Consensus 573 ~~~~~-~~g~----~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 635 (650)
+.+-. +..+ ...|++-|++.++.- -.+....++.|++..++..+.+.|+.-.+-.-+.+
T Consensus 385 i~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y----LPVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC~ehd 448 (459)
T KOG4340|consen 385 IQVQEARHNRDDEAIRKAVNEYDETLEKY----LPVLMAQAKIYWNLEDYPMVEKIFRKSVEFCNDHD 448 (459)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhccccccHHHHHHHHHHHhhhcccc
Confidence 11111 1111 223334444444332 12344556667777788888877777666543333
No 94
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.30 E-value=9.9e-09 Score=90.34 Aligned_cols=416 Identities=13% Similarity=0.075 Sum_probs=234.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHH
Q 045674 150 YISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYN-FLMNGLV 228 (650)
Q Consensus 150 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~ll~~~~ 228 (650)
+.+.+.-+.+..++++|++++..-.++. +.+......|..+|....++..|...|+++... .|...-|. .-...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 5566777789999999999998888775 557888999999999999999999999999875 45554443 3446778
Q ss_pred hcCChhHHHHHHHHHhcCCCCCChhhHHH--HHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 045674 229 NSMFIESSELVFKVMENGKVGPDVVTYNT--MIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSC 306 (650)
Q Consensus 229 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 306 (650)
+.+.+..|..+...|.+. ++...-.. -.......+++..+..+++.....| +..+.+...-...+.|+++.|
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHH
Confidence 899999999999988752 22221111 1223345688888888888876433 556666667777899999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHH----HHHHHHHHhcCCHHHHHHHHHH
Q 045674 307 LSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIY----TALIDSYAKLGSMNEAINIFER 382 (650)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~A~~~~~~ 382 (650)
.+-|+...+-+--.....|+. .-+..+.|+++.|.+...+++++|++..+..- .-.+.+ ...|+. + .
T Consensus 164 vqkFqaAlqvsGyqpllAYni-ALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv-rsvgNt---~----~ 234 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQPLLAYNL-ALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV-RSVGNT---L----V 234 (459)
T ss_pred HHHHHHHHhhcCCCchhHHHH-HHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch-hcccch---H----H
Confidence 999999888654334455554 44566889999999999999999876322100 000000 000000 0 0
Q ss_pred HHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 045674 383 MKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRAN-GVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRD 461 (650)
Q Consensus 383 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 461 (650)
|...+ =...+|.-...+.+.|+++.|.+.+-.|.-+ .-..|+.|...+.-.- ..+++-+..+-+.-++... |--
T Consensus 235 lh~Sa---l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP 309 (459)
T KOG4340|consen 235 LHQSA---LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFP 309 (459)
T ss_pred HHHHH---HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCC
Confidence 00000 0112333334455666666666666555322 1223444444333211 1233334444444444443 344
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH-HH
Q 045674 462 SYCYNVLIDALAKCGKLDEALALFKRMEDEGCD-QTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRA-LS 539 (650)
Q Consensus 462 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~-l~ 539 (650)
..+|..++-.||+..-++.|-.++.+-...... .+...|+.|=......-..++|.+-++.+...- ..-+.. .+
T Consensus 310 ~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~~l----~~kLRklAi 385 (459)
T KOG4340|consen 310 PETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAGML----TEKLRKLAI 385 (459)
T ss_pred hHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 456666666666666666665555432111000 122222222211122334455544443332110 000000 01
Q ss_pred HHH-HhcCC----HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 045674 540 IGL-CLSGK----VARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDR 595 (650)
Q Consensus 540 ~~~-~~~g~----~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 595 (650)
..- .+..+ ...|++-+++.++. --.+....++.+|+..++..+.++|+...+-
T Consensus 386 ~vQe~r~~~dd~a~R~ai~~Yd~~LE~---YLPVlMa~AkiyW~~~Dy~~vEk~Fr~Svef 443 (459)
T KOG4340|consen 386 QVQEARHNRDDEAIRKAVNEYDETLEK---YLPVLMAQAKIYWNLEDYPMVEKIFRKSVEF 443 (459)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhccccccHHHHHHHHHHHhh
Confidence 110 01111 11222333333322 2334556778889999999999999988764
No 95
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.29 E-value=7.9e-07 Score=89.28 Aligned_cols=471 Identities=13% Similarity=0.101 Sum_probs=258.3
Q ss_pred CCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHc
Q 045674 123 VSKRPNVGLRLFTWAARQKKYSHNLECYISLIDCLALCGDVDRVRLVFNELKEKG--------FLMTVSAANSLIKSFGG 194 (650)
Q Consensus 123 ~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~ 194 (650)
.-|+.+.|.+-.+.+. +..+|..++.++.+.+++|-|.-.+-.|.... ...+...-......-..
T Consensus 740 tiG~MD~AfksI~~Ik-------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAie 812 (1416)
T KOG3617|consen 740 TIGSMDAAFKSIQFIK-------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIE 812 (1416)
T ss_pred EeccHHHHHHHHHHHh-------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHH
Confidence 4578888877666543 45689999999999999988876655543211 00011222334444567
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCChhHHHHH
Q 045674 195 LGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEK 274 (650)
Q Consensus 195 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 274 (650)
.|..++|..+|++.... ..|=..|...|.+++|.++-+.--... -..||......+-..++.+.|++.
T Consensus 813 LgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~Aley 880 (1416)
T KOG3617|consen 813 LGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAALEY 880 (1416)
T ss_pred HhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHHHH
Confidence 89999999999998763 333455677899999988877543221 235666667777777888888888
Q ss_pred HHHHHh----------CCC---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 045674 275 FRAMEA----------RNV---------QPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKV 335 (650)
Q Consensus 275 ~~~~~~----------~~~---------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 335 (650)
|++... .++ ..|...|.--...+-..|+.+.|+.+|..... |.+++++.|-.
T Consensus 881 yEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~q 951 (1416)
T KOG3617|consen 881 YEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQ 951 (1416)
T ss_pred HHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeec
Confidence 876421 110 11223333333344455666666666655432 45666677777
Q ss_pred CChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----------CCCCCCHHhHH---------
Q 045674 336 GKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKY----------EGVEPDEVTYG--------- 396 (650)
Q Consensus 336 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----------~~~~p~~~~~~--------- 396 (650)
|+.++|-++-++-- |......|.+.|...|++.+|..+|.+... .++. ...++
T Consensus 952 Gk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~--d~L~nlal~s~~~d 1023 (1416)
T KOG3617|consen 952 GKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMK--DRLANLALMSGGSD 1023 (1416)
T ss_pred cCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHH--HHHHHHHhhcCchh
Confidence 88888777655432 556677789999999999999988876532 1111 11111
Q ss_pred ----------------HHHHHHHhcCCHHHHHHHHH--------HHHHC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 045674 397 ----------------VIISGLCKNERLEEAMQYFE--------FCRAN--GVAVNAMFYSSLIDGLGKAGRVDEAEELF 450 (650)
Q Consensus 397 ----------------~l~~~~~~~g~~~~a~~~~~--------~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 450 (650)
..+..|-+.|.+.+|+++-- +++.. ....|....+.-...++...++++|..++
T Consensus 1024 ~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL 1103 (1416)
T KOG3617|consen 1024 LVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLL 1103 (1416)
T ss_pred HHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 11223555666666655421 11222 23335555555666666666666666555
Q ss_pred HHHHH----------cCC----------------CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHH----------H
Q 045674 451 EEMVE----------KGC----------------PRD----SYCYNVLIDALAKCGKLDEALALFKRME----------D 490 (650)
Q Consensus 451 ~~~~~----------~~~----------------~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------~ 490 (650)
-...+ +++ .|+ ..++..++..+.++|.+..|-+-|.+.- +
T Consensus 1104 ~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdKl~AMraLLK 1183 (1416)
T KOG3617|consen 1104 CLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDKLSAMRALLK 1183 (1416)
T ss_pred HHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhHHHHHHHHHh
Confidence 33221 111 111 1345667777888888877766665432 2
Q ss_pred cCCC----------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---------------hc
Q 045674 491 EGCD----------QTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLC---------------LS 545 (650)
Q Consensus 491 ~~~~----------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~---------------~~ 545 (650)
.|-. .....| ++..-|...-+|..--++++.+... -.....+..|+..|. ..
T Consensus 1184 SGdt~KI~FFAn~sRqkEiY-ImAANyLQtlDWq~~pq~mK~I~tF--YTKgqafd~LanFY~~cAqiEiee~q~ydKa~ 1260 (1416)
T KOG3617|consen 1184 SGDTQKIRFFANTSRQKEIY-IMAANYLQTLDWQDNPQTMKDIETF--YTKGQAFDHLANFYKSCAQIEIEELQTYDKAM 1260 (1416)
T ss_pred cCCcceEEEEeeccccceee-eehhhhhhhcccccChHHHhhhHhh--hhcchhHHHHHHHHHHHHHhhHHHHhhhhHHh
Confidence 2110 000011 1111122222222222222222110 001112223332221 12
Q ss_pred CCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH-----------HcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHH
Q 045674 546 GKVARACKILDELAPKGIIPETAFEDMITCLC-----------KTGRIKEACKLADGIVDREREIP----GKIRTALINA 610 (650)
Q Consensus 546 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-----------~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~ 610 (650)
|-.++|.+.+.++..++. ....++.|-.-+. ...+..+.++-.+.+++...-++ ..++..++..
T Consensus 1261 gAl~eA~kCl~ka~~k~~-~~t~l~~Lq~~~a~vk~~l~~~q~~~eD~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~ 1339 (1416)
T KOG3617|consen 1261 GALEEAAKCLLKAEQKNM-STTGLDALQEDLAKVKVQLRKLQIMKEDAADGIRQCTTLLEEPILDDIIRCTRLFALLIED 1339 (1416)
T ss_pred HHHHHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHH
Confidence 334455555555554432 2222332222111 12245555666666665533332 4577889999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCC
Q 045674 611 LRKAGNADLAIKLMHSKIGVGYD 633 (650)
Q Consensus 611 ~~~~g~~~~A~~~~~~~~~~~~~ 633 (650)
+....+|..|...++++..+.+.
T Consensus 1340 ~v~~k~y~~AyRal~el~~k~p~ 1362 (1416)
T KOG3617|consen 1340 HVSRKNYKPAYRALTELQKKVPN 1362 (1416)
T ss_pred HHhhhhccHHHHHHHHHhhcCCc
Confidence 99999999999999999988665
No 96
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=1e-06 Score=90.43 Aligned_cols=478 Identities=14% Similarity=0.147 Sum_probs=275.3
Q ss_pred CCchhhhHHHHHHhhcCCCChHHHHHHHHhccCCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 045674 91 SSDMEANLDSFCRKFLIKLSPNFVSFVLRNHDVSKRPNVGLRLFTWAARQKKYSHNLECYISLIDCLALCGDVDRVRLVF 170 (650)
Q Consensus 91 ~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 170 (650)
+.++..-++.|.+.......|-++..++.. ...+...+-+-...+ +.++- .-+..-.-+.+++.-...++
T Consensus 792 rnn~~kyIE~yVQkvNps~~p~VvG~LLD~----dC~E~~ik~Li~~v~-gq~~~-----deLv~EvEkRNRLklLlp~L 861 (1666)
T KOG0985|consen 792 RNNLQKYIEIYVQKVNPSRTPQVVGALLDV----DCSEDFIKNLILSVR-GQFPV-----DELVEEVEKRNRLKLLLPWL 861 (1666)
T ss_pred HhhHHHHHHHHHhhcCCcccchhhhhhhcC----CCcHHHHHHHHHHHh-ccCCh-----HHHHHHHHhhhhHHHHHHHH
Confidence 445566677777665555556555555533 334444443332222 11222 23555666777888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHcCCCH-HHHHH---HHH-----HHH-HC-----------C--------CCCCHHHHH
Q 045674 171 NELKEKGFLMTVSAANSLIKSFGGLGMV-EELLW---VWR-----SMK-EN-----------G--------IEPSLYTYN 221 (650)
Q Consensus 171 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~---~~~-----~~~-~~-----------~--------~~~~~~~~~ 221 (650)
+..+..| ..+..++|+|...|...++- +.-++ .|+ +.. ++ | +......|.
T Consensus 862 E~~i~eG-~~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK 940 (1666)
T KOG0985|consen 862 ESLIQEG-SQDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFK 940 (1666)
T ss_pred HHHHhcc-CcchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHH
Confidence 8888877 55788888888887665432 22110 111 111 11 1 111223445
Q ss_pred HHHHHHHhcCChhH-----------HHHHHHHHhcCCCC--CChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCC--CCC
Q 045674 222 FLMNGLVNSMFIES-----------SELVFKVMENGKVG--PDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNV--QPD 286 (650)
Q Consensus 222 ~ll~~~~~~~~~~~-----------A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~ 286 (650)
...+.+++..+.+- -.++.++....+++ .|+.....-++++...+-..+-+++++++.-.+. .-+
T Consensus 941 ~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~ 1020 (1666)
T KOG0985|consen 941 SQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEN 1020 (1666)
T ss_pred HHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccc
Confidence 55555666555432 23444555543332 3556667778889999999999999998874321 112
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------------------CCCHHHHHHHHHHHHhcCChHHHHH
Q 045674 287 KITYMTLIQACYLEGDFDSCLSLYHEMDEKGI-----------------------EIPSHAYNLVIGGLCKVGKCIEGHA 343 (650)
Q Consensus 287 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------------------~~~~~~~~~l~~~~~~~g~~~~a~~ 343 (650)
...-+.|+-...+ .+...+.+..+++...+. ..+......|+. ..+.++.|.+
T Consensus 1021 ~nLQnLLiLtAik-ad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie---~i~~ldRA~e 1096 (1666)
T KOG0985|consen 1021 RNLQNLLILTAIK-ADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIE---NIGSLDRAYE 1096 (1666)
T ss_pred hhhhhhHHHHHhh-cChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHH---HhhhHHHHHH
Confidence 2223333333222 233444444444433211 112222222222 1233333333
Q ss_pred HHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 045674 344 IFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGV 423 (650)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 423 (650)
+-++.. ....|..++.+-.+.|...+|++-|-+.- |...|.-+++...+.|.|++-.+++...++..-
T Consensus 1097 fAe~~n------~p~vWsqlakAQL~~~~v~dAieSyikad------Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~ 1164 (1666)
T KOG0985|consen 1097 FAERCN------EPAVWSQLAKAQLQGGLVKDAIESYIKAD------DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVR 1164 (1666)
T ss_pred HHHhhC------ChHHHHHHHHHHHhcCchHHHHHHHHhcC------CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhc
Confidence 332221 45678888888888888888887775543 667788888888888888888888877776654
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 045674 424 AVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTIL 503 (650)
Q Consensus 424 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 503 (650)
.|... ..|+-+|.+.+++.+-.+.+ . .|+.......+.-|...|.++.|.-+|. ++..|..|
T Consensus 1165 E~~id--~eLi~AyAkt~rl~elE~fi----~---gpN~A~i~~vGdrcf~~~~y~aAkl~y~---------~vSN~a~L 1226 (1666)
T KOG0985|consen 1165 EPYID--SELIFAYAKTNRLTELEEFI----A---GPNVANIQQVGDRCFEEKMYEAAKLLYS---------NVSNFAKL 1226 (1666)
T ss_pred Cccch--HHHHHHHHHhchHHHHHHHh----c---CCCchhHHHHhHHHhhhhhhHHHHHHHH---------HhhhHHHH
Confidence 44433 45777888888877655443 1 3677777777777777888887776665 33446777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-cHHHHHHHHHHHHHcCCH
Q 045674 504 INGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGII-PETAFEDMITCLCKTGRI 582 (650)
Q Consensus 504 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~ 582 (650)
...+...|++..|...-+++. +..+|..+..+|...+.+.-|. +...+.. ..+-+..++..|...|-+
T Consensus 1227 a~TLV~LgeyQ~AVD~aRKAn------s~ktWK~VcfaCvd~~EFrlAQ-----iCGL~iivhadeLeeli~~Yq~rGyF 1295 (1666)
T KOG0985|consen 1227 ASTLVYLGEYQGAVDAARKAN------STKTWKEVCFACVDKEEFRLAQ-----ICGLNIIVHADELEELIEYYQDRGYF 1295 (1666)
T ss_pred HHHHHHHHHHHHHHHHhhhcc------chhHHHHHHHHHhchhhhhHHH-----hcCceEEEehHhHHHHHHHHHhcCcH
Confidence 777778888877776655432 5567777776766655543332 2222222 556667777778888888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 045674 583 KEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHS 626 (650)
Q Consensus 583 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 626 (650)
+|-+.+++..+... ......+.-|+-.|.+- +.++-++.++-
T Consensus 1296 eElIsl~Ea~LGLE-RAHMgmfTELaiLYsky-kp~km~EHl~L 1337 (1666)
T KOG0985|consen 1296 EELISLLEAGLGLE-RAHMGMFTELAILYSKY-KPEKMMEHLKL 1337 (1666)
T ss_pred HHHHHHHHhhhchh-HHHHHHHHHHHHHHHhc-CHHHHHHHHHH
Confidence 88888888776543 33445555555544433 44444444443
No 97
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.22 E-value=2.7e-09 Score=102.74 Aligned_cols=256 Identities=13% Similarity=0.043 Sum_probs=169.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 045674 364 IDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRV 443 (650)
Q Consensus 364 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 443 (650)
+.-+.+.|++.+|.-.|+..++.... +...|..|.......++-..|+..++++.+.++. +......|.-.|...|.-
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhH
Confidence 33455667777777777766655211 4556666766667777777777777777776655 666666677777777777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHH----H-H--HHHHHcCCHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 045674 444 DEAEELFEEMVEKGCPRDSYCYNV----L-I--DALAKCGKLDEALALFKRM-EDEGCDQTVYTYTILINGMFKEHRNEE 515 (650)
Q Consensus 444 ~~A~~~~~~~~~~~~~~~~~~~~~----l-~--~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~ 515 (650)
.+|+..++..+.... +-...-.. . . ..+.....+....++|-++ ...+..+|......|+-.|.-.|.+++
T Consensus 370 ~~Al~~L~~Wi~~~p-~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKP-KYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHHhCc-cchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 777777777665421 10000000 0 0 0011111223344444444 344434677778888888888889999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 045674 516 ALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDR 595 (650)
Q Consensus 516 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 595 (650)
|..+|+.++...+. |...|+.|+-.+....+.++|+..|+++++..|.-..+...|+-.|...|.|++|.+.|-.++..
T Consensus 449 aiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 449 AVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 99999888876544 67788888888888888899999999998888887888888888889999999998888777654
Q ss_pred CCC---------CCHHHHHHHHHHHHhcCCHHHHHHH
Q 045674 596 ERE---------IPGKIRTALINALRKAGNADLAIKL 623 (650)
Q Consensus 596 ~~~---------~~~~~~~~l~~~~~~~g~~~~A~~~ 623 (650)
... ++..+|..|-.++...++.|.+.+.
T Consensus 528 q~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 528 QRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 211 1245787777777777777755443
No 98
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.22 E-value=3.8e-07 Score=90.34 Aligned_cols=215 Identities=18% Similarity=0.192 Sum_probs=111.7
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 045674 367 YAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEA 446 (650)
Q Consensus 367 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 446 (650)
+...|+++.|+..|-+.. .....+.+......|.+|+.+++.+..... ....|..+..-|...|+++.|
T Consensus 716 l~~~~q~daainhfiea~---------~~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~a 784 (1636)
T KOG3616|consen 716 LEQIGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIA 784 (1636)
T ss_pred HHHHHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHH
Confidence 344455555555544332 112233444556667777777766655432 233455566667777777777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045674 447 EELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDK 526 (650)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 526 (650)
.++|-+.- .++.-+.+|.+.|+|++|.++-++... +......|..-..-+-..|++.+|.+++-.+.
T Consensus 785 e~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~-- 851 (1636)
T KOG3616|consen 785 EELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIG-- 851 (1636)
T ss_pred HHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEcc--
Confidence 76664432 234456667777777777666554432 23344445444455556666666666553321
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 045674 527 GITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTA 606 (650)
Q Consensus 527 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 606 (650)
.|+. .+..|-+.|..++.+++.++-.. -.-.++..+++.-|...|+.++|...|-++-+ |..
T Consensus 852 --~p~~-----aiqmydk~~~~ddmirlv~k~h~--d~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~ka 913 (1636)
T KOG3616|consen 852 --EPDK-----AIQMYDKHGLDDDMIRLVEKHHG--DHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKA 913 (1636)
T ss_pred --CchH-----HHHHHHhhCcchHHHHHHHHhCh--hhhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHH
Confidence 2332 23455666666666555544321 11334445555666666666666655544321 334
Q ss_pred HHHHHHhcCCHHHHHHH
Q 045674 607 LINALRKAGNADLAIKL 623 (650)
Q Consensus 607 l~~~~~~~g~~~~A~~~ 623 (650)
..+.|...+-|++|..+
T Consensus 914 avnmyk~s~lw~dayri 930 (1636)
T KOG3616|consen 914 AVNMYKASELWEDAYRI 930 (1636)
T ss_pred HHHHhhhhhhHHHHHHH
Confidence 44444445555544443
No 99
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.22 E-value=8.3e-08 Score=96.00 Aligned_cols=230 Identities=14% Similarity=0.123 Sum_probs=143.1
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC-C--------CCCCHHHHHHHHH
Q 045674 155 DCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELLWVWRSMKEN-G--------IEPSLYTYNFLMN 225 (650)
Q Consensus 155 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~--------~~~~~~~~~~ll~ 225 (650)
..|..-|+.|.|.+-..-+. +..+|..|...+.+..+.+-|.-.+..|... | -.++ .+-.....
T Consensus 736 SfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAv 808 (1416)
T KOG3617|consen 736 SFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAV 808 (1416)
T ss_pred eEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHH
Confidence 34677899999998887776 4568999999999998888887666655431 1 1111 22222333
Q ss_pred HHHhcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 045674 226 GLVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDS 305 (650)
Q Consensus 226 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 305 (650)
.....|.+++|+.++++... |..|=+.|...|.+++|+++-+.--... =..||.....-+-..++.+.
T Consensus 809 LAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~ 876 (1416)
T KOG3617|consen 809 LAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEA 876 (1416)
T ss_pred HHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHH
Confidence 35678999999999998763 3455577888999999999876533221 23577777777778888888
Q ss_pred HHHHHHHHHHCC-------------------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 045674 306 CLSLYHEMDEKG-------------------IEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDS 366 (650)
Q Consensus 306 a~~~~~~~~~~~-------------------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 366 (650)
|++.|++..... -..|...|..+...+-..|+.+.|+.++....+ |..+++.
T Consensus 877 AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI 947 (1416)
T KOG3617|consen 877 ALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRI 947 (1416)
T ss_pred HHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheee
Confidence 888887532110 011233344444444455555555555554432 3345555
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 045674 367 YAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFC 418 (650)
Q Consensus 367 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 418 (650)
.|-.|+.++|-.+-++-. |......+.+.|-..|++.+|..+|.++
T Consensus 948 ~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 948 KCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred EeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 555566666555444322 4445555666666666666666666544
No 100
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.21 E-value=1.7e-07 Score=92.96 Aligned_cols=197 Identities=13% Similarity=0.032 Sum_probs=91.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHH
Q 045674 397 VIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGC-PRDS--YCYNVLIDALA 473 (650)
Q Consensus 397 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~--~~~~~l~~~~~ 473 (650)
.+...+...|++++|...+++..+..+. +...+..+..++...|++++|...+++...... .++. ..|..+...+.
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~ 197 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL 197 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH
Confidence 3344455555555555555555555433 344455555555566666666666555554321 0111 22334555566
Q ss_pred HcCCHHHHHHHHHHHHHcCC-CCCHHHH-H--HHHHHHHhcCCHHHHHHHHHHHHH---CC-C-CCCHHHHHHHHHHHHh
Q 045674 474 KCGKLDEALALFKRMEDEGC-DQTVYTY-T--ILINGMFKEHRNEEALKLWDMMID---KG-I-TPTAASFRALSIGLCL 544 (650)
Q Consensus 474 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~~~~~~A~~~~~~~~~---~~-~-~p~~~~~~~l~~~~~~ 544 (650)
..|++++|..+++++..... .+..... + .++..+...|....+.+. +.+.. .. . ..........+.++..
T Consensus 198 ~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 276 (355)
T cd05804 198 ERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHFPDHGLAFNDLHAALALAG 276 (355)
T ss_pred HCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhcCcccchHHHHHHHHHHhc
Confidence 66666666666666543221 1111111 1 111122222321111111 11110 00 0 0011111234555666
Q ss_pred cCCHHHHHHHHHHHhhCC-------CC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 045674 545 SGKVARACKILDELAPKG-------II--PETAFEDMITCLCKTGRIKEACKLADGIVDR 595 (650)
Q Consensus 545 ~g~~~~A~~~~~~~~~~~-------~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 595 (650)
.|+.++|...++.+.... .. ...+....+.++...|++++|.+.+..++..
T Consensus 277 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 277 AGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred CCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 777777777776665321 11 2233344555666778888888777777654
No 101
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.18 E-value=2.9e-07 Score=103.63 Aligned_cols=336 Identities=13% Similarity=0.044 Sum_probs=218.0
Q ss_pred HHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC------CC--HHHHHHHHHHH
Q 045674 261 GYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIE------IP--SHAYNLVIGGL 332 (650)
Q Consensus 261 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~--~~~~~~l~~~~ 332 (650)
.+...|+++.+...++.+.......+..........+...|+++++...+......-.. +. ......+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 34456777777777665522111112223344555667889999999999877543111 11 12223344566
Q ss_pred HhcCChHHHHHHHHHHHHcCCCcC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CCC--HHhHHHHHHHHH
Q 045674 333 CKVGKCIEGHAIFESMIRRGCQPN----VAIYTALIDSYAKLGSMNEAINIFERMKYEGV---EPD--EVTYGVIISGLC 403 (650)
Q Consensus 333 ~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~p~--~~~~~~l~~~~~ 403 (650)
...|++++|...++...+.-...+ ....+.+...+...|++++|...+.+.....- .+. ..++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 789999999999999876411112 12445667778889999999999988764211 111 234455666788
Q ss_pred hcCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCC--CHHHHHHHHHHH
Q 045674 404 KNERLEEAMQYFEFCRAN----GVA--V-NAMFYSSLIDGLGKAGRVDEAEELFEEMVEKG--CPR--DSYCYNVLIDAL 472 (650)
Q Consensus 404 ~~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~--~~~~~~~l~~~~ 472 (650)
..|++++|...+++.... +.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 899999999998776542 211 1 22344556677788899999999998876631 111 234455567788
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCC-HHHH-----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHH
Q 045674 473 AKCGKLDEALALFKRMEDEGCDQT-VYTY-----TILINGMFKEHRNEEALKLWDMMIDKGITPT---AASFRALSIGLC 543 (650)
Q Consensus 473 ~~~g~~~~A~~~~~~~~~~~~~~~-~~~~-----~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~ 543 (650)
...|++++|...++++........ ...+ ...+..+...|+.+.|...+........... ...+..++.++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 899999999999988854311111 1111 1122344568899999998877654221111 112456777888
Q ss_pred hcCCHHHHHHHHHHHhhC----CCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 045674 544 LSGKVARACKILDELAPK----GII--PETAFEDMITCLCKTGRIKEACKLADGIVDRE 596 (650)
Q Consensus 544 ~~g~~~~A~~~~~~~~~~----~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 596 (650)
..|++++|...++++... +.. ...+...++.++...|+.++|.+.+.++++..
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 999999999999998753 222 33567778899999999999999999999875
No 102
>PLN02789 farnesyltranstransferase
Probab=99.17 E-value=7.8e-08 Score=91.12 Aligned_cols=224 Identities=13% Similarity=0.052 Sum_probs=151.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 045674 364 IDSYAKLGSMNEAINIFERMKYEGVEPD-EVTYGVIISGLCKNE-RLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAG 441 (650)
Q Consensus 364 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 441 (650)
-..+...+..++|+.++.++++. .|+ ..+|+....++...| ++++++..++.+.+.+++ +..+|+....++.+.|
T Consensus 44 ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~ 120 (320)
T PLN02789 44 RAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLG 120 (320)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcC
Confidence 33344456677777777777765 333 334554444555555 567788888777777665 5556665555555555
Q ss_pred CH--HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CCH---
Q 045674 442 RV--DEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKE---HRN--- 513 (650)
Q Consensus 442 ~~--~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~--- 513 (650)
+. ++++.+++.+++.+ +.+..+|+....++.+.|+++++++.++++++.++. |...|+....++.+. |+.
T Consensus 121 ~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~ 198 (320)
T PLN02789 121 PDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAM 198 (320)
T ss_pred chhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccccccccc
Confidence 52 56777777777765 667778888888888888888888888888887655 666677666555443 222
Q ss_pred -HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcC--------
Q 045674 514 -EEALKLWDMMIDKGITPTAASFRALSIGLCL----SGKVARACKILDELAPKGIIPETAFEDMITCLCKTG-------- 580 (650)
Q Consensus 514 -~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------- 580 (650)
++.+.+..+++...+. |...|+.+...+.. .++..+|.+++.++...++.+..++..|+.+|+...
T Consensus 199 ~e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~ 277 (320)
T PLN02789 199 RDSELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRD 277 (320)
T ss_pred HHHHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhh
Confidence 4667777777776554 66777777777766 245567888888888777778888888888887632
Q ss_pred ----------CHHHHHHHHHHHH
Q 045674 581 ----------RIKEACKLADGIV 593 (650)
Q Consensus 581 ----------~~~~A~~~~~~~~ 593 (650)
..++|.++++.+.
T Consensus 278 ~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 278 TVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred hhhccccccccHHHHHHHHHHHH
Confidence 2366777777774
No 103
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.16 E-value=7.3e-09 Score=91.35 Aligned_cols=120 Identities=13% Similarity=0.092 Sum_probs=67.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCC--HHHH
Q 045674 475 CGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGL-CLSGK--VARA 551 (650)
Q Consensus 475 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~--~~~A 551 (650)
.++.+++...+++..+.++. +...|..++..|...|++++|...++++.+..+. +...+..++.++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHH
Confidence 44455555555555554433 5555666666666666666666666666555433 455555555543 34444 3566
Q ss_pred HHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 045674 552 CKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDRE 596 (650)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 596 (650)
.++++++.+.+|.+..++..++..+...|++++|+..|+++++..
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 666666666655555666666666666666666666666665554
No 104
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.14 E-value=1.8e-09 Score=100.83 Aligned_cols=252 Identities=16% Similarity=0.161 Sum_probs=159.0
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHH
Q 045674 330 GGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLE 409 (650)
Q Consensus 330 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 409 (650)
+-+.-.|++..++.-.+ ........+......+.+++...|+++.++ .++.... .|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 44556788888876555 222222223445556778888888877554 3333332 556555555554443334555
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045674 410 EAMQYFEFCRANGVAV-NAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRM 488 (650)
Q Consensus 410 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 488 (650)
.++.-++......... +.........++...|++++|++++... .+.......+.+|.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555555443333222 2333333345566778888888877542 46677777888888899999999999888
Q ss_pred HHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 045674 489 EDEGCDQTVYTYTILINGMFK----EHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGII 564 (650)
Q Consensus 489 ~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 564 (650)
.+. ..| .+...+..++.. .+.+.+|.-+|+++.+. ..++..+++.++.++...|++++|.++++++.+.++.
T Consensus 158 ~~~--~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~ 233 (290)
T PF04733_consen 158 QQI--DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN 233 (290)
T ss_dssp HCC--SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred Hhc--CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence 775 223 334445554432 33688889999887654 5567888888888888899999999999888888888
Q ss_pred cHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHcC
Q 045674 565 PETAFEDMITCLCKTGRI-KEACKLADGIVDRE 596 (650)
Q Consensus 565 ~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~ 596 (650)
+++++.+++.+....|+. +.+.+++.++....
T Consensus 234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~ 266 (290)
T PF04733_consen 234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQSN 266 (290)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHT
T ss_pred CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhC
Confidence 888888888888888887 66777888777653
No 105
>PF13041 PPR_2: PPR repeat family
Probab=99.14 E-value=1.3e-10 Score=76.55 Aligned_cols=49 Identities=51% Similarity=0.935 Sum_probs=32.4
Q ss_pred CChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 045674 250 PDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACY 298 (650)
Q Consensus 250 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 298 (650)
||+.+||++|++|++.|++++|.++|++|.+.|+.||..||+.++.+|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 5666666666666666666666666666666666666666666666654
No 106
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.11 E-value=3.4e-09 Score=88.39 Aligned_cols=109 Identities=10% Similarity=-0.064 Sum_probs=60.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHc
Q 045674 500 YTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKT 579 (650)
Q Consensus 500 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 579 (650)
+..++..+...|++++|...|+.++...+. +...+..++.++...|++++|...|+++...+|.+...+..++.++...
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 334455555556666666666555554333 4555555555555566666666666666655555555555566666666
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 045674 580 GRIKEACKLADGIVDREREIPGKIRTALINA 610 (650)
Q Consensus 580 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 610 (650)
|++++|+..|+++++.. +.+...+...+.+
T Consensus 106 g~~~eAi~~~~~Al~~~-p~~~~~~~~~~~~ 135 (144)
T PRK15359 106 GEPGLAREAFQTAIKMS-YADASWSEIRQNA 135 (144)
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 66666666666655554 4444444444433
No 107
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.11 E-value=2.2e-08 Score=92.59 Aligned_cols=188 Identities=17% Similarity=0.052 Sum_probs=124.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--HHH
Q 045674 426 NAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDS---YCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTV--YTY 500 (650)
Q Consensus 426 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~ 500 (650)
....+..++..+...|++++|...++++.... +.+. ..+..++.+|.+.|++++|+..++++.+..+.... .++
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 55666777777888888888888888887753 3332 45677778888888888888888888776443121 244
Q ss_pred HHHHHHHHhc--------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHH
Q 045674 501 TILINGMFKE--------HRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDM 572 (650)
Q Consensus 501 ~~l~~~~~~~--------~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 572 (650)
..++.++... |++++|.+.++++.+..+. +......+..... .... .......+
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~~-------------~~~~~~~~ 172 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRNR-------------LAGKELYV 172 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHHH-------------HHHHHHHH
Confidence 5555555543 6677777777777765333 2222211111100 0000 01112357
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 045674 573 ITCLCKTGRIKEACKLADGIVDRER--EIPGKIRTALINALRKAGNADLAIKLMHSKIGVGY 632 (650)
Q Consensus 573 ~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 632 (650)
+..+...|++++|+..++++++... +.....+..++.++.+.|++++|...++.+....+
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 7788999999999999999987631 22357888999999999999999999888876543
No 108
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.10 E-value=6.4e-09 Score=97.16 Aligned_cols=151 Identities=21% Similarity=0.197 Sum_probs=72.1
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCC
Q 045674 402 LCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAK----CGK 477 (650)
Q Consensus 402 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~ 477 (650)
+...|++++|++++... .+.......+.+|.+.++++.|.+.++.|.+.+ .|. +...++.++.. .++
T Consensus 112 ~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD~-~l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--EDS-ILTQLAEAWVNLATGGEK 182 (290)
T ss_dssp HCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CCH-HHHHHHHHHHHHHHTTTC
T ss_pred HHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcH-HHHHHHHHHHHHHhCchh
Confidence 44455555555555421 144444455555556666666666665555432 222 22223222221 224
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHH
Q 045674 478 LDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKV-ARACKILD 556 (650)
Q Consensus 478 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~ 556 (650)
+.+|..+|+++.+. +.++..+++.++.++...|++++|.+++.++.+.+.. +..++..++.+....|+. +.+.+++.
T Consensus 183 ~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 183 YQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 55566666665443 3345555555555555566666666665555544333 444555555555555554 44555555
Q ss_pred HHhhCCC
Q 045674 557 ELAPKGI 563 (650)
Q Consensus 557 ~~~~~~~ 563 (650)
++....|
T Consensus 261 qL~~~~p 267 (290)
T PF04733_consen 261 QLKQSNP 267 (290)
T ss_dssp HCHHHTT
T ss_pred HHHHhCC
Confidence 5554433
No 109
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.10 E-value=1.3e-06 Score=86.76 Aligned_cols=83 Identities=11% Similarity=0.085 Sum_probs=44.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 045674 151 ISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVNS 230 (650)
Q Consensus 151 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 230 (650)
.+....+...|+-+.|-++- .. +- --.+.|..|.+.|.+-.|......=.. +..|......+..++++.
T Consensus 593 ~sy~q~l~dt~qd~ka~elk----~s----dg-d~laaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~ 661 (1636)
T KOG3616|consen 593 RSYLQALMDTGQDEKAAELK----ES----DG-DGLAAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKG 661 (1636)
T ss_pred HHHHHHHHhcCchhhhhhhc----cc----cC-ccHHHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhh
Confidence 34555666667666665432 11 00 113456677777777666554321111 223555555556666666
Q ss_pred CChhHHHHHHHHHh
Q 045674 231 MFIESSELVFKVME 244 (650)
Q Consensus 231 ~~~~~A~~~~~~~~ 244 (650)
.-++.|-.+|+++.
T Consensus 662 elydkagdlfeki~ 675 (1636)
T KOG3616|consen 662 ELYDKAGDLFEKIH 675 (1636)
T ss_pred HHHHhhhhHHHHhh
Confidence 66666666666655
No 110
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.09 E-value=9.9e-09 Score=85.57 Aligned_cols=119 Identities=13% Similarity=0.042 Sum_probs=96.2
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 045674 518 KLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDRER 597 (650)
Q Consensus 518 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 597 (650)
.++++.++. .|+ .+...+..+...|++++|...|+.++...|.+...+..++.++...|++++|+..|+++++.+
T Consensus 14 ~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~- 88 (144)
T PRK15359 14 DILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD- 88 (144)
T ss_pred HHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-
Confidence 456666654 333 355677888889999999999999998888888999999999999999999999999999886
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCChhhhhhh
Q 045674 598 EIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYDRMGSIKRR 641 (650)
Q Consensus 598 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 641 (650)
+.+..++..++.++...|++++|+..++++++..+........+
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~ 132 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIR 132 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 77888888899999999999999999999998887754444433
No 111
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.08 E-value=9.9e-09 Score=101.55 Aligned_cols=217 Identities=17% Similarity=0.103 Sum_probs=183.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 045674 394 TYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALA 473 (650)
Q Consensus 394 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 473 (650)
.-..+...+...|-...|..+|+++. .|...+.+|+..|+..+|..+..+-+++ +||+..|..+++...
T Consensus 400 ~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLH 468 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhcc
Confidence 33556677888999999999998654 4667888999999999999999998885 799999999999888
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 045674 474 KCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACK 553 (650)
Q Consensus 474 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 553 (650)
...-+++|.++.+..... +-..+.......++++++.+.|+.-.+.++- ...+|..++.+..+.++++.|.+
T Consensus 469 d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred ChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHHhhhHHHHH
Confidence 777888998888766442 1122223334579999999999998886544 67889999999999999999999
Q ss_pred HHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045674 554 ILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGV 630 (650)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 630 (650)
.|...+...|.+.+.|+++..+|.+.|+-.+|...++++++.+ ..+-.+|....-...+.|.+++|++.++++++.
T Consensus 541 aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 541 AFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999988 667778888888889999999999999998875
No 112
>PF13041 PPR_2: PPR repeat family
Probab=99.08 E-value=4.2e-10 Score=74.16 Aligned_cols=49 Identities=45% Similarity=0.970 Sum_probs=29.5
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHH
Q 045674 355 PNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLC 403 (650)
Q Consensus 355 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 403 (650)
||+.+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555666666666666666666666666666666666666666665554
No 113
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=1.3e-05 Score=82.77 Aligned_cols=202 Identities=14% Similarity=0.119 Sum_probs=92.0
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 045674 253 VTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGL 332 (650)
Q Consensus 253 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 332 (650)
..|..+..+-.+.|...+|++-|-+. .|...|..++....+.|.|++-.+.+...++...+|.. =..|+-+|
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~Ay 1176 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAY 1176 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHH
Confidence 34555555555555555554444332 13344555555555555555555554444443332222 23344445
Q ss_pred HhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHH
Q 045674 333 CKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAM 412 (650)
Q Consensus 333 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 412 (650)
.+.+++.+.++++ .-||.........-|...|.++.|.-+|..+ .-|..+...+...|+++.|.
T Consensus 1177 Akt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AV 1240 (1666)
T KOG0985|consen 1177 AKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAV 1240 (1666)
T ss_pred HHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHH
Confidence 5555544433332 1234444444445555555555554444322 23444444455555555544
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 045674 413 QYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRME 489 (650)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 489 (650)
+.-+++ .+..+|...-.+|...+.+.-| +|...++.....-...++..|...|-+++.+.+++..+
T Consensus 1241 D~aRKA------ns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L 1306 (1666)
T KOG0985|consen 1241 DAARKA------NSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL 1306 (1666)
T ss_pred HHhhhc------cchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh
Confidence 333221 1344455444444444433322 22222222333444556666666666666666666543
No 114
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.06 E-value=4.7e-08 Score=86.23 Aligned_cols=125 Identities=11% Similarity=0.065 Sum_probs=101.2
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHH-HHcCC--HHHH
Q 045674 509 KEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCL-CKTGR--IKEA 585 (650)
Q Consensus 509 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A 585 (650)
..++.+++...++..++.++. +...|..++..|...|++++|...|+++.+..|.+..++..++.++ ...|+ .++|
T Consensus 51 ~~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 51 SQQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred CchhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 366777888888888776555 7788888888888888888888888888888888888888888875 56676 4888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCh
Q 045674 586 CKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYDRM 635 (650)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 635 (650)
.++++++++.+ +.+..++..++..+.+.|++++|+..|+++++..+..+
T Consensus 130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 130 REMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 88888888886 66788888888888888888888888888888766644
No 115
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.04 E-value=7.1e-08 Score=100.78 Aligned_cols=137 Identities=15% Similarity=0.188 Sum_probs=92.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 045674 458 CPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRA 537 (650)
Q Consensus 458 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ 537 (650)
++.+...+..|+....+.|.+++|+.+++.+.+..+. +......++.++.+.+++++|+..+++.....+. +......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHH
Confidence 4555666777777777777777777777777665433 4555566666667777777777777777765544 5556666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 045674 538 LSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDRE 596 (650)
Q Consensus 538 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 596 (650)
++.++.+.|++++|..+|+++...++.+..++..++.++...|+.++|...|+++++..
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 66677777777777777777776666666777777777777777777777777776653
No 116
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.04 E-value=8.8e-08 Score=83.64 Aligned_cols=164 Identities=14% Similarity=0.154 Sum_probs=118.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 045674 426 NAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILIN 505 (650)
Q Consensus 426 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 505 (650)
|... ..+...+...|+-+....+....... .+.|......++....+.|++..|+..+++.....+ +|..+|+.++.
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p-~d~~~~~~lga 142 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAP-TDWEAWNLLGA 142 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCC-CChhhhhHHHH
Confidence 3444 55666677777777777666665443 255666666777777788888888888887777643 47778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHH
Q 045674 506 GMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEA 585 (650)
Q Consensus 506 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 585 (650)
+|.+.|++++|..-|.+..+..+. +...++.++..+.-.|+.+.|..++..+......+..+-..++.+....|++++|
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A 221 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREA 221 (257)
T ss_pred HHHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHH
Confidence 888888888888888887776444 5566777777777788888888888888777666777778888888888888888
Q ss_pred HHHHHHHH
Q 045674 586 CKLADGIV 593 (650)
Q Consensus 586 ~~~~~~~~ 593 (650)
.++...-+
T Consensus 222 ~~i~~~e~ 229 (257)
T COG5010 222 EDIAVQEL 229 (257)
T ss_pred Hhhccccc
Confidence 77766554
No 117
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.03 E-value=8.1e-08 Score=101.61 Aligned_cols=235 Identities=13% Similarity=0.077 Sum_probs=148.9
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 045674 392 EVTYGVIISGLCKNERLEEAMQYFEFCRAN-GVAV---NAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNV 467 (650)
Q Consensus 392 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 467 (650)
...|...|......++.++|+++.++++.. ++.- -...|.++++....-|.-+...++|+++.+.. ....+|..
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~~ 1535 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHLK 1535 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHHH
Confidence 456677777777777777777777766653 2211 12355666666666666677777777777642 33455666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC
Q 045674 468 LIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITP-TAASFRALSIGLCLSG 546 (650)
Q Consensus 468 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 546 (650)
|...|.+.+++++|.++|+.|.+. +......|..++..+.+..+.+.|..++.++++.-+.- ........++.-++.|
T Consensus 1536 L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~G 1614 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYG 1614 (1710)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcC
Confidence 777777777777777777777665 22456667777777777777777777777777642221 2334445555666777
Q ss_pred CHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHH
Q 045674 547 KVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPG--KIRTALINALRKAGNADLAIKLM 624 (650)
Q Consensus 547 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~ 624 (650)
+.+.+..+|+..+...|.-.+.|+.+++.-.++|+.+.++.+|++++.++..+.. ..|...+.--..+|+-+.+..+=
T Consensus 1615 DaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~VK 1694 (1710)
T KOG1070|consen 1615 DAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYVK 1694 (1710)
T ss_pred CchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHHH
Confidence 7777777777777777777777777777777777777777777777777655532 34444444444556654444444
Q ss_pred HHHHH
Q 045674 625 HSKIG 629 (650)
Q Consensus 625 ~~~~~ 629 (650)
.++.+
T Consensus 1695 arA~E 1699 (1710)
T KOG1070|consen 1695 ARAKE 1699 (1710)
T ss_pred HHHHH
Confidence 44433
No 118
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.03 E-value=7.9e-09 Score=86.12 Aligned_cols=116 Identities=14% Similarity=0.083 Sum_probs=79.4
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 045674 519 LWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDRERE 598 (650)
Q Consensus 519 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 598 (650)
.+++++...+. +......++..+...|++++|...++.+...++.+...+..++.++...|++++|..+++++++.+ +
T Consensus 5 ~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p 82 (135)
T TIGR02552 5 TLKDLLGLDSE-QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-P 82 (135)
T ss_pred hHHHHHcCChh-hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-C
Confidence 34445444332 344555666667777777777777777777766677777777777777777777777777777665 5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCChh
Q 045674 599 IPGKIRTALINALRKAGNADLAIKLMHSKIGVGYDRMG 636 (650)
Q Consensus 599 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 636 (650)
.+...+..++.++...|++++|...++++++..+....
T Consensus 83 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 83 DDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 56667777777777777777777777777777665444
No 119
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.02 E-value=1.8e-07 Score=80.92 Aligned_cols=189 Identities=16% Similarity=0.179 Sum_probs=101.7
Q ss_pred cCCHHHHHHHHHHHHHC---C-CCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 045674 405 NERLEEAMQYFEFCRAN---G-VAVNA-MFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLD 479 (650)
Q Consensus 405 ~g~~~~a~~~~~~~~~~---~-~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 479 (650)
..+.++..+++..+... + ..++. ..|..++-+....|+.+.|..+++++... +|.+..+-..-+..+...|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchh
Confidence 34556666666555432 2 22222 22334444455566666666666666554 2334443333344445556666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 045674 480 EALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELA 559 (650)
Q Consensus 480 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 559 (650)
+|+++++.+++.++. |..++-.-+...-..|+.-+|++-+.+..+. +..|.+.|..+...|...|++++|.-.+++++
T Consensus 104 ~A~e~y~~lL~ddpt-~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDDPT-DTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccCcc-hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 666666666655432 4445544444444555555666655555554 23366666666666666666666666666666
Q ss_pred hCCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcC
Q 045674 560 PKGIIPETAFEDMITCLCKTG---RIKEACKLADGIVDRE 596 (650)
Q Consensus 560 ~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~ 596 (650)
-..|.++-.+..+++.+.-.| +..-|.++|.++++.+
T Consensus 182 l~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 182 LIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 655656666666665555444 3444566666666543
No 120
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.02 E-value=2.9e-05 Score=74.93 Aligned_cols=428 Identities=12% Similarity=0.139 Sum_probs=226.4
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 045674 143 YSHNLECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNF 222 (650)
Q Consensus 143 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 222 (650)
.|.|..+|+.|++-+..+ ..++++..++++... ++.....|..-+..-.+..+++....+|.++... ..+...|..
T Consensus 16 nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~l 91 (656)
T KOG1914|consen 16 NPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWKL 91 (656)
T ss_pred CCccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHHH
Confidence 355788888888887766 888888888888764 4667788888888888888888888888888775 335666666
Q ss_pred HHHHHHh-cCChh----HHHHHHHHHhc-CCCCC-ChhhHHHHHHH---------HHHcCChhHHHHHHHHHHhCCCCCC
Q 045674 223 LMNGLVN-SMFIE----SSELVFKVMEN-GKVGP-DVVTYNTMIKG---------YCKVGKTQKAMEKFRAMEARNVQPD 286 (650)
Q Consensus 223 ll~~~~~-~~~~~----~A~~~~~~~~~-~~~~~-~~~~~~~l~~~---------~~~~g~~~~A~~~~~~~~~~~~~~~ 286 (650)
.+....+ .++.. ...+.|+.... .|+.+ +...|+..+.. |..+.+.+...++|+++...-+.-=
T Consensus 92 Yl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nl 171 (656)
T KOG1914|consen 92 YLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNL 171 (656)
T ss_pred HHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccH
Confidence 6554322 22222 22333333332 23222 22234444432 2333455667777777765421100
Q ss_pred HHHHHH------HHHHH-------HhcCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHhcCChHH--HHHHHHHHH
Q 045674 287 KITYMT------LIQAC-------YLEGDFDSCLSLYHEMDE--KGIEIPSHAYNLVIGGLCKVGKCIE--GHAIFESMI 349 (650)
Q Consensus 287 ~~~~~~------l~~~~-------~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~--a~~~~~~~~ 349 (650)
...|+- -|+.. -+...+..|.++++++.. .|......+ .-..|--++ ..+++...+
T Consensus 172 EkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~-------vp~~~T~~e~~qv~~W~n~I 244 (656)
T KOG1914|consen 172 EKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPA-------VPPKGTKDEIQQVELWKNWI 244 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCC-------CCCCCChHHHHHHHHHHHHH
Confidence 112211 11111 112334555555555543 121111100 000011111 111111111
Q ss_pred H----cCCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCCCHHhH-----HHHHHHHHhcCC-------HHHH
Q 045674 350 R----RGCQ-PNVAIYTALIDSYAKLGSMNEAINIFERMK-YEGVEPDEVTY-----GVIISGLCKNER-------LEEA 411 (650)
Q Consensus 350 ~----~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~p~~~~~-----~~l~~~~~~~g~-------~~~a 411 (650)
+ .+.. .+.... -....-.+++.. -.+..|+.... ....+.+...|+ -+++
T Consensus 245 ~wEksNpL~t~~~~~~------------~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~ 312 (656)
T KOG1914|consen 245 KWEKSNPLRTLDGTML------------TRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEA 312 (656)
T ss_pred HHHhcCCcccccccHH------------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHH
Confidence 1 0000 000000 000011111111 11112211100 001111222232 3455
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045674 412 MQYFEFCRANGVAVNAMFYSSLIDGLGKAG---RVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRM 488 (650)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 488 (650)
..+++.....-..-+..+|..+...--..- ..+.....++++...-...-..+|..+++.-.+..-+..|..+|.++
T Consensus 313 ~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~ka 392 (656)
T KOG1914|consen 313 ASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKA 392 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHH
Confidence 555555544322224444444433221111 25555666666665432333456777777777777888888899888
Q ss_pred HHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC---
Q 045674 489 EDEGCDQ-TVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGII--- 564 (650)
Q Consensus 489 ~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--- 564 (650)
.+.+..+ ++..+++++.-+| .++.+-|.++|+--++. ...+.......+.-+.+.++-..|..+|++++.....
T Consensus 393 R~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~k 470 (656)
T KOG1914|consen 393 REDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADK 470 (656)
T ss_pred hhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhh
Confidence 8876665 6667777777554 57888888888877754 2224455556677778888888888899988877332
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 045674 565 PETAFEDMITCLCKTGRIKEACKLADGIVDR 595 (650)
Q Consensus 565 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 595 (650)
...+|..++.--..-|+...++++-++....
T Consensus 471 s~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 471 SKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 5678888888888888888888887766543
No 121
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.01 E-value=1.1e-07 Score=82.97 Aligned_cols=162 Identities=14% Similarity=0.050 Sum_probs=103.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 045674 461 DSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSI 540 (650)
Q Consensus 461 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 540 (650)
|..+ ..+...+...|+-+....+........+ .+......++....+.|++.+|...+.++....+ +|...++.++-
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~-~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p-~d~~~~~~lga 142 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAYP-KDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAP-TDWEAWNLLGA 142 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccCc-ccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCC-CChhhhhHHHH
Confidence 4444 5555556666666666666665444322 2555555566666677777777777777766533 36667777777
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 045674 541 GLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLA 620 (650)
Q Consensus 541 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 620 (650)
+|.+.|++++|..-|.++.+..+.++.++++++-.+.-.|+.+.|..++..+.... +.|..+...++.+....|++++|
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A 221 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREA 221 (257)
T ss_pred HHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHH
Confidence 77777777777777777777666667777777777777777777777777666554 44566666666666677777777
Q ss_pred HHHHHH
Q 045674 621 IKLMHS 626 (650)
Q Consensus 621 ~~~~~~ 626 (650)
..+..+
T Consensus 222 ~~i~~~ 227 (257)
T COG5010 222 EDIAVQ 227 (257)
T ss_pred Hhhccc
Confidence 665543
No 122
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.01 E-value=1.1e-07 Score=94.40 Aligned_cols=236 Identities=17% Similarity=0.119 Sum_probs=190.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 045674 321 PSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIIS 400 (650)
Q Consensus 321 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 400 (650)
--..-..+...+.+.|-...|..+|++.. .|...+.+|+..|+..+|..+..+-.++ +||...|..+++
T Consensus 397 ~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGD 465 (777)
T KOG1128|consen 397 IWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGD 465 (777)
T ss_pred cchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhh
Confidence 33445567888999999999999998764 4667888999999999999999888874 789999999998
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 045674 401 GLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDE 480 (650)
Q Consensus 401 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 480 (650)
......-+++|.++.+..-.. .-..+.......++++++.+.|+.-.+.. +-...+|..++.+..+.++++.
T Consensus 466 v~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHH
Confidence 887777789999888765332 12223333445789999999999998875 6778899999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 045674 481 ALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAP 560 (650)
Q Consensus 481 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 560 (650)
|.+.|.......+. +...||.+..+|.+.|+..+|...++++.+.+.. +...|...+....+.|.+++|.+.+.++..
T Consensus 538 av~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 99999999887554 7889999999999999999999999999988744 666777777778899999999999999886
Q ss_pred CCCC--cHHHHHHHHHHHH
Q 045674 561 KGII--PETAFEDMITCLC 577 (650)
Q Consensus 561 ~~~~--~~~~~~~l~~~~~ 577 (650)
.... ++.+...++....
T Consensus 616 ~~~~~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 616 LRKKYKDDEVLLIIVRTVL 634 (777)
T ss_pred hhhhcccchhhHHHHHHHH
Confidence 4332 5555555554443
No 123
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.00 E-value=3.5e-05 Score=74.36 Aligned_cols=423 Identities=13% Similarity=0.120 Sum_probs=245.2
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhhHHHH
Q 045674 179 LMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMFIESSELVFKVMENGKVGPDVVTYNTM 258 (650)
Q Consensus 179 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 258 (650)
|.|..+|..|++-+..+ -.+++.+.++++... ++-....|...+.......+++..+++|.+.+.. ..+...|...
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~lY 92 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWKLY 92 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHHHH
Confidence 78999999999988777 999999999999886 5567888999999999999999999999998865 4467777777
Q ss_pred HHHHHHc-CChhH----HHHHHHHHH-hCCCCCC-HHHHHHHHHH---------HHhcCCHHHHHHHHHHHHHCCCCCCH
Q 045674 259 IKGYCKV-GKTQK----AMEKFRAME-ARNVQPD-KITYMTLIQA---------CYLEGDFDSCLSLYHEMDEKGIEIPS 322 (650)
Q Consensus 259 ~~~~~~~-g~~~~----A~~~~~~~~-~~~~~~~-~~~~~~l~~~---------~~~~~~~~~a~~~~~~~~~~~~~~~~ 322 (650)
+..-.+. |+... ....|+-.. +.|..+- ...|+..+.- +..+.+.+...++|+++...-+..-.
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE 172 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE 172 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence 7544332 33332 223333332 3343322 2334444332 22334556666677766654222111
Q ss_pred HHHHHH------HHHHH-------hcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh-------cCCHHH--HHHHH
Q 045674 323 HAYNLV------IGGLC-------KVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAK-------LGSMNE--AINIF 380 (650)
Q Consensus 323 ~~~~~l------~~~~~-------~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~--A~~~~ 380 (650)
..|+-. ++... +...+..|.++++++.. +.+++.+ .|-.++ ..+++
T Consensus 173 kLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~------------lt~GL~r~~~~vp~~~T~~e~~qv~~W 240 (656)
T KOG1914|consen 173 KLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQN------------LTRGLNRNAPAVPPKGTKDEIQQVELW 240 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHH------------HHhhhcccCCCCCCCCChHHHHHHHHH
Confidence 111111 00000 11122223333332221 1111111 111111 11111
Q ss_pred HHHHH----CCCC-CCHHhHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCCCHHH----H-HHHHHHHHHcCC-------
Q 045674 381 ERMKY----EGVE-PDEVTYGVIISGLCKNERLEEAMQYFEFCR-ANGVAVNAMF----Y-SSLIDGLGKAGR------- 442 (650)
Q Consensus 381 ~~~~~----~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~----~-~~l~~~~~~~~~------- 442 (650)
...++ .++. .+..... ....-++++.. -.+..|+... | ....+.+...|+
T Consensus 241 ~n~I~wEksNpL~t~~~~~~~------------~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~ 308 (656)
T KOG1914|consen 241 KNWIKWEKSNPLRTLDGTMLT------------RRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSL 308 (656)
T ss_pred HHHHHHHhcCCcccccccHHH------------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhh
Confidence 11110 1111 0000000 00011111111 1111111110 0 011112333333
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 045674 443 VDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCG---KLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKL 519 (650)
Q Consensus 443 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 519 (650)
-+++..+++..+..-..-+..+|..+...-...- +.+.....++++.......-.-+|..++....+..-...|..+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 4566667766665422234444544444322222 2556666676666542222334577788877888889999999
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 045674 520 WDMMIDKGITP-TAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDRERE 598 (650)
Q Consensus 520 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 598 (650)
|.++.+.+..+ +.....+++..+| .++.+-|.++|+--+++..+++......+..+...++-..|..+|++++....+
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~ 467 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLS 467 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCC
Confidence 99999877766 5556666666554 689999999999999887788888889999999999999999999999988545
Q ss_pred CC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045674 599 IP--GKIRTALINALRKAGNADLAIKLMHSKIGV 630 (650)
Q Consensus 599 ~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 630 (650)
++ ..+|..++.--..-|+...++++-++....
T Consensus 468 ~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 468 ADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred hhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 43 579999999889999999999998876654
No 124
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.97 E-value=1.6e-07 Score=86.75 Aligned_cols=185 Identities=14% Similarity=0.023 Sum_probs=138.6
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH---HH
Q 045674 391 DEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAV--NAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSY---CY 465 (650)
Q Consensus 391 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~ 465 (650)
....+..+...+...|++++|...|+++....+.. ....+..++.++...|++++|...++++++.. |.+.. .+
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~ 110 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDADYAY 110 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCchHHHH
Confidence 45677788888999999999999999998876541 12466778899999999999999999999874 33332 56
Q ss_pred HHHHHHHHHc--------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 045674 466 NVLIDALAKC--------GKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRA 537 (650)
Q Consensus 466 ~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ 537 (650)
..++.++.+. |++++|.+.|+++.+..+. +...+..+..... ..... ......
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~~~--------------~~~~~~ 171 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRNRL--------------AGKELY 171 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHHHH--------------HHHHHH
Confidence 7777777765 7899999999999987443 3333322221111 11100 011235
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 045674 538 LSIGLCLSGKVARACKILDELAPKGII---PETAFEDMITCLCKTGRIKEACKLADGIVDR 595 (650)
Q Consensus 538 l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 595 (650)
++..+.+.|++++|...++++++..+. ...++..++.++...|++++|..+++.+...
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 667789999999999999999988664 4688999999999999999999999888754
No 125
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.97 E-value=4.4e-07 Score=94.96 Aligned_cols=145 Identities=12% Similarity=0.100 Sum_probs=114.7
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 045674 424 AVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTIL 503 (650)
Q Consensus 424 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 503 (650)
..+...+..|..+..+.|.+++|..+++.+.+.. |.+......++.++.+.+++++|+..+++.....+. +......+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHH
Confidence 3367788888888888888888888888888874 667777888888888888888888888888887655 77777788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHH
Q 045674 504 INGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFED 571 (650)
Q Consensus 504 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 571 (650)
..++...|++++|..+|+++...++. +..++..++.++...|+.++|...|+++.+..-+....|+.
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~ 227 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTR 227 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHH
Confidence 88888888888888888888875443 57788888888888888888888888888764443344433
No 126
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.95 E-value=1e-06 Score=93.69 Aligned_cols=227 Identities=14% Similarity=0.135 Sum_probs=171.1
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 045674 415 FEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEK-GCP---RDSYCYNVLIDALAKCGKLDEALALFKRMED 490 (650)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 490 (650)
|+++....+. +...|...+......++.++|.++.++++.. ++. --..+|.++++.....|.-+...++|+++.+
T Consensus 1447 ferlvrssPN-SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq 1525 (1710)
T KOG1070|consen 1447 FERLVRSSPN-SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ 1525 (1710)
T ss_pred HHHHHhcCCC-cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH
Confidence 3444444444 5666777777788888888998888888764 111 1234677777777777878888888888877
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--cHHH
Q 045674 491 EGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGII--PETA 568 (650)
Q Consensus 491 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~ 568 (650)
. +. ....|..|...|.+.+++++|.++++.|.+. ..-....|..++..+.++.+-++|..++.++++.-|. ..+.
T Consensus 1526 y-cd-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~ 1602 (1710)
T KOG1070|consen 1526 Y-CD-AYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEF 1602 (1710)
T ss_pred h-cc-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHH
Confidence 5 22 3456778888888888889999999888865 2346778888888888888888888888888877666 5667
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---hhhhhhhhccc
Q 045674 569 FEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYDR---MGSIKRRVKFR 645 (650)
Q Consensus 569 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~ 645 (650)
....+..-.+.|+.+.+..+|+..+... |.-...|..+++.-.++|+.+.++.+|+++++++..+ ...+++++.|+
T Consensus 1603 IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyE 1681 (1710)
T KOG1070|consen 1603 ISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYE 1681 (1710)
T ss_pred HHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHH
Confidence 7778888888898888888988888764 6677888888888888899899999999998888875 23455555555
Q ss_pred c
Q 045674 646 S 646 (650)
Q Consensus 646 ~ 646 (650)
+
T Consensus 1682 k 1682 (1710)
T KOG1070|consen 1682 K 1682 (1710)
T ss_pred H
Confidence 4
No 127
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.94 E-value=0.0001 Score=75.73 Aligned_cols=226 Identities=12% Similarity=0.057 Sum_probs=143.2
Q ss_pred CCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHH
Q 045674 123 VSKRPNVGLRLFTWAARQKKYSHNLECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELL 202 (650)
Q Consensus 123 ~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 202 (650)
..++...|++-...+.++. |....+-..=+-.+.+.|+.++|..+++.....+ ..|..+...+-..|...|+.++|.
T Consensus 21 d~~qfkkal~~~~kllkk~--Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~-~~D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKH--PNALYAKVLKALSLFRLGKGDEALKLLEALYGLK-GTDDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hhHHHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCC-CCchHHHHHHHHHHHHHhhhhHHH
Confidence 3456777888887766652 3333333333444578889999998888777665 347888888888899999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcC-Chh---------HHH
Q 045674 203 WVWRSMKENGIEPSLYTYNFLMNGLVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVG-KTQ---------KAM 272 (650)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~---------~A~ 272 (650)
.+|++..+. .|+......++.+|++.+++.+-.++--++-+ .++.+...+=.++..+.+.- ..+ -|.
T Consensus 98 ~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~ 174 (932)
T KOG2053|consen 98 HLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAE 174 (932)
T ss_pred HHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHH
Confidence 999988875 45677777788888888877654444333332 12334444444555444431 111 244
Q ss_pred HHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 045674 273 EKFRAMEARN-VQPDKITYMTLIQACYLEGDFDSCLSLY-HEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIR 350 (650)
Q Consensus 273 ~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 350 (650)
..++.+.+.+ .--+..-.......+-..|.+++|++++ ....+.-...+...-+.-+..+...+++.+..++..+++.
T Consensus 175 ~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 175 KMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred HHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 5555555543 1112222333345556778889998888 3444443444555556677788888888888888888888
Q ss_pred cCCC
Q 045674 351 RGCQ 354 (650)
Q Consensus 351 ~~~~ 354 (650)
.|..
T Consensus 255 k~~D 258 (932)
T KOG2053|consen 255 KGND 258 (932)
T ss_pred hCCc
Confidence 7543
No 128
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.93 E-value=3.3e-07 Score=96.59 Aligned_cols=232 Identities=16% Similarity=0.139 Sum_probs=149.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 045674 356 NVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEV-TYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLI 434 (650)
Q Consensus 356 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 434 (650)
+...+..|+..|...+++++|..+.+...+. .|+.. .|..+...+.+.++.+++..+ .++
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------NLI 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------hhh
Confidence 4567888899998999999999999877665 45533 344444456666665555443 233
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 045674 435 DGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNE 514 (650)
Q Consensus 435 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 514 (650)
.......++.....+...+... ..+...+..++.+|.+.|+.++|..+++++++..+. |+.+.|.++..|... +.+
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred hhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHH
Confidence 3333334443333444444442 345557777788888888888888888888777644 777778888777777 788
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc--------------------HHHHHHHHH
Q 045674 515 EALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIP--------------------ETAFEDMIT 574 (650)
Q Consensus 515 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--------------------~~~~~~l~~ 574 (650)
+|.+++.+++.. +...+++.++.++|.++....+.+ ...+..+-.
T Consensus 167 KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~ 231 (906)
T PRK14720 167 KAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYE 231 (906)
T ss_pred HHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHH
Confidence 888877777653 333445555555555555544442 233444456
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045674 575 CLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIG 629 (650)
Q Consensus 575 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 629 (650)
.|...++|++++.+++.+++.. +.|..+..-++.+|. ++|.. ...+++.++
T Consensus 232 ~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~ 282 (906)
T PRK14720 232 PYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK--EKYKD-HSLLEDYLK 282 (906)
T ss_pred HHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH--HHccC-cchHHHHHH
Confidence 7778888999999999999886 667777788888776 33333 444444444
No 129
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.89 E-value=3e-06 Score=74.09 Aligned_cols=250 Identities=15% Similarity=0.127 Sum_probs=157.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCH
Q 045674 329 IGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERL 408 (650)
Q Consensus 329 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 408 (650)
++-+.-.|.+..++..-....... -++..-..+.++|...|.+...+. ++... -.|.......+......-++.
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~---eI~~~-~~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVIS---EIKEG-KATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccc---ccccc-cCChHHHHHHHHHHhhCcchh
Confidence 344555677776665554443331 244444456677777776554433 22222 244444444444444444554
Q ss_pred HHHHHH-HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 045674 409 EEAMQY-FEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKR 487 (650)
Q Consensus 409 ~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 487 (650)
++-+.- .+.+.......+......-+..|++.+++++|++..... .+......=+.++.+..+++-|.+.+++
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~------~~lE~~Al~VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG------ENLEAAALNVQILLKMHRFDLAEKELKK 162 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc------chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444333 344444444434344444556688888888888877652 2333444445556777888888888888
Q ss_pred HHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 045674 488 MEDEGCDQTVYTYTILINGMFK----EHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGI 563 (650)
Q Consensus 488 ~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 563 (650)
|.+. .+..|.+.|..++.+ .+...+|.-+|++|.++ ..|+..+.+..+.++...|++++|..+++.++..+.
T Consensus 163 mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 163 MQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA 238 (299)
T ss_pred HHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 8874 266777777777753 45678888888888764 567888888888888888888888888888888888
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHH-HHHHHHHH
Q 045674 564 IPETAFEDMITCLCKTGRIKEAC-KLADGIVD 594 (650)
Q Consensus 564 ~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~ 594 (650)
.+++++.+++.+-...|...++. +.+.+...
T Consensus 239 ~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 239 KDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 88888888877777777765553 44444443
No 130
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.89 E-value=2.2e-06 Score=81.73 Aligned_cols=149 Identities=16% Similarity=0.119 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 045674 462 SYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIG 541 (650)
Q Consensus 462 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 541 (650)
....+.....+...|++++|+..++.+++..+. |...+......+.+.++..+|.+.++++....+. .......++.+
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~-N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~a 383 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLLQPLIAAQPD-NPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQA 383 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHH
Confidence 334444555566667777777777777665432 5555666666777777777777777777765332 24455566777
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 045674 542 LCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAI 621 (650)
Q Consensus 542 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 621 (650)
|.+.|+..+|+.+++......+.++..|..|+++|...|+..+|..... ..|.-.|+++.|+
T Consensus 384 ll~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~A------------------E~~~~~G~~~~A~ 445 (484)
T COG4783 384 LLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARA------------------EGYALAGRLEQAI 445 (484)
T ss_pred HHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHH------------------HHHHhCCCHHHHH
Confidence 7777777777777777777777777777777777777777666544433 3345566666666
Q ss_pred HHHHHHHHC
Q 045674 622 KLMHSKIGV 630 (650)
Q Consensus 622 ~~~~~~~~~ 630 (650)
..+..+.++
T Consensus 446 ~~l~~A~~~ 454 (484)
T COG4783 446 IFLMRASQQ 454 (484)
T ss_pred HHHHHHHHh
Confidence 666666654
No 131
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.87 E-value=3.9e-06 Score=73.41 Aligned_cols=254 Identities=14% Similarity=0.121 Sum_probs=143.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCH
Q 045674 294 IQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSM 373 (650)
Q Consensus 294 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 373 (650)
++-+.-.|+|..++..-....... -+...-..+.+.|...|.+.....-. ... -.|.......+......-++.
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~eI---~~~-~~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVISEI---KEG-KATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccccc---ccc-cCChHHHHHHHHHHhhCcchh
Confidence 344555677777766655544432 23344444556666666654433222 211 122333333333333333443
Q ss_pred HHHH-HHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 045674 374 NEAI-NIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEE 452 (650)
Q Consensus 374 ~~A~-~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 452 (650)
++-+ ++.+.+......-+......-...|++.|++++|++...... +......=...+.+..+++-|.+.++.
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKK 162 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333 334444443333333334444445777778887777766511 233333334456666777777777777
Q ss_pred HHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 045674 453 MVEKGCPRDSYCYNVLIDALAK----CGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGI 528 (650)
Q Consensus 453 ~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 528 (650)
|.+- .+..+.+.|+.++.+ .+++.+|.-+|++|.++ ..|+..+.+....++...|++++|..+++.++....
T Consensus 163 mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 163 MQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA 238 (299)
T ss_pred HHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 7764 355666666666654 34577777777777764 456777777777777777888888888877776654
Q ss_pred CCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHhhCCCC
Q 045674 529 TPTAASFRALSIGLCLSGKVAR-ACKILDELAPKGII 564 (650)
Q Consensus 529 ~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~ 564 (650)
. ++.++..++.+-...|+..+ -.+.+.+.....|.
T Consensus 239 ~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~ 274 (299)
T KOG3081|consen 239 K-DPETLANLIVLALHLGKDAEVTERNLSQLKLSHPE 274 (299)
T ss_pred C-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCc
Confidence 4 66666666666666665544 34555555554443
No 132
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.84 E-value=4.7e-06 Score=72.32 Aligned_cols=199 Identities=16% Similarity=0.086 Sum_probs=154.6
Q ss_pred hcCCHHHHHHHHHHHHH---CC-CCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 045674 369 KLGSMNEAINIFERMKY---EG-VEPDEV-TYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRV 443 (650)
Q Consensus 369 ~~~~~~~A~~~~~~~~~---~~-~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 443 (650)
...+.++..+++.++.. .| ..++.. .|..++-+....|+.+.|...++.+...-+. +..+-..-+..+-..|++
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~-S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPG-SKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHhhch
Confidence 34678899998888864 23 445544 4556666777889999999999998887533 555544455556778999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 045674 444 DEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMM 523 (650)
Q Consensus 444 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 523 (650)
++|+++++.+++.+ |.|..++-.-+......|+--+|++-+....+. +..|...|..+...|...|++++|.-+++++
T Consensus 103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 99999999999986 778888887777888889888999988888887 4459999999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHhhCCCCcHHHHHH
Q 045674 524 IDKGITPTAASFRALSIGLCLSG---KVARACKILDELAPKGIIPETAFED 571 (650)
Q Consensus 524 ~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~ 571 (650)
+-..+. ++..+..++..+.-.| +.+-|.++|.++++..+.+...+.-
T Consensus 181 ll~~P~-n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~G 230 (289)
T KOG3060|consen 181 LLIQPF-NPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFG 230 (289)
T ss_pred HHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHH
Confidence 976444 6677778888776655 6778999999999987654444433
No 133
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.77 E-value=4.1e-07 Score=75.73 Aligned_cols=111 Identities=15% Similarity=0.141 Sum_probs=89.0
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 045674 484 LFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGI 563 (650)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 563 (650)
.+++++...+. +......++..+...|++++|...++.+...++. +...+..++..+...|++++|..+++++.+.++
T Consensus 5 ~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 82 (135)
T TIGR02552 5 TLKDLLGLDSE-QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALDP 82 (135)
T ss_pred hHHHHHcCChh-hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 45555555333 4455666777788888999999998888876544 677888888888888999999999999888888
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 045674 564 IPETAFEDMITCLCKTGRIKEACKLADGIVDRE 596 (650)
Q Consensus 564 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 596 (650)
.+...+..++.++...|++++|...|+++++..
T Consensus 83 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 83 DDPRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 888888889999999999999999999988875
No 134
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.75 E-value=6.6e-06 Score=87.06 Aligned_cols=150 Identities=9% Similarity=0.049 Sum_probs=71.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 045674 394 TYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALA 473 (650)
Q Consensus 394 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 473 (650)
.+..+..+|-+.|+.++|..+++++++.++. |..+.+.++..|... ++++|.+++.+++.. |.
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i 180 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FI 180 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HH
Confidence 4444555555555555555555555555533 555555555555555 555555555555443 33
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 045674 474 KCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDK-GITPTAASFRALSIGLCLSGKVARAC 552 (650)
Q Consensus 474 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~ 552 (650)
..+++..+.+++.++....+. +...+..+. +++... |..--..++.-+...|...++++++.
T Consensus 181 ~~kq~~~~~e~W~k~~~~~~~-d~d~f~~i~----------------~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i 243 (906)
T PRK14720 181 KKKQYVGIEEIWSKLVHYNSD-DFDFFLRIE----------------RKVLGHREFTRLVGLLEDLYEPYKALEDWDEVI 243 (906)
T ss_pred hhhcchHHHHHHHHHHhcCcc-cchHHHHHH----------------HHHHhhhccchhHHHHHHHHHHHhhhhhhhHHH
Confidence 344555555555555544221 211111111 111110 11111222333334444555566666
Q ss_pred HHHHHHhhCCCCcHHHHHHHHHHHH
Q 045674 553 KILDELAPKGIIPETAFEDMITCLC 577 (650)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~l~~~~~ 577 (650)
.+++.+++..+.+..+...++.+|.
T Consensus 244 ~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 244 YILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHhcCCcchhhHHHHHHHHH
Confidence 6666666665555555555555554
No 135
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.67 E-value=4.4e-06 Score=79.75 Aligned_cols=131 Identities=15% Similarity=0.046 Sum_probs=116.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHH
Q 045674 504 INGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIK 583 (650)
Q Consensus 504 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 583 (650)
...+...|++++|+..++.++...+. |...+...+..+...++..+|.+.+++++...|........++.+|.+.|+++
T Consensus 313 A~~~~~~~~~d~A~~~l~~L~~~~P~-N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 313 ALQTYLAGQYDEALKLLQPLIAAQPD-NPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHHHhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChH
Confidence 33456789999999999999887544 77777888899999999999999999999999998999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCChh
Q 045674 584 EACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYDRMG 636 (650)
Q Consensus 584 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 636 (650)
+|+.+++...... +.|+..|..|+.+|...|+..+|.....+.....-....
T Consensus 392 eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~ 443 (484)
T COG4783 392 EAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQ 443 (484)
T ss_pred HHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHH
Confidence 9999999999876 889999999999999999999999999888776444433
No 136
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.67 E-value=5.4e-07 Score=73.39 Aligned_cols=98 Identities=12% Similarity=0.026 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 045674 533 ASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALR 612 (650)
Q Consensus 533 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 612 (650)
..+..++..+...|++++|.++|+.+...+|.+...|..|+-++...|++++|+..|..+...+ +.|+..+..++.++.
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L 114 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHH
Confidence 3444556666777777777777777777777777777777777777777777777777777776 567777777777777
Q ss_pred hcCCHHHHHHHHHHHHHCC
Q 045674 613 KAGNADLAIKLMHSKIGVG 631 (650)
Q Consensus 613 ~~g~~~~A~~~~~~~~~~~ 631 (650)
..|+.+.|++.|+.++...
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HcCCHHHHHHHHHHHHHHh
Confidence 7777777777777777764
No 137
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.57 E-value=4.6e-06 Score=70.01 Aligned_cols=117 Identities=15% Similarity=0.064 Sum_probs=76.2
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc---HHHHHHHHHHHHHcCCHH
Q 045674 509 KEHRNEEALKLWDMMIDKGITPT--AASFRALSIGLCLSGKVARACKILDELAPKGIIP---ETAFEDMITCLCKTGRIK 583 (650)
Q Consensus 509 ~~~~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~ 583 (650)
..++...+...++.+.+....-. ......++..+...|++++|...|+.+....+.+ ..+...++.++...|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 36777777777777776533311 2233445566777777777777777777765432 334556777777788888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 045674 584 EACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSK 627 (650)
Q Consensus 584 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 627 (650)
+|+..++..... ...+..+...+++|...|++++|+..|+++
T Consensus 103 ~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 103 EALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 888777664322 334556667777788888888888877765
No 138
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.56 E-value=1.1e-06 Score=78.51 Aligned_cols=108 Identities=15% Similarity=0.104 Sum_probs=67.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHH
Q 045674 506 GMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEA 585 (650)
Q Consensus 506 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 585 (650)
-+.+.++|++|+..|.++++..+. |...|..-+.+|.+.|.++.|++-.+.++..++.....|..|+.+|...|++++|
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 345666777777777777765444 5555666666677777777777777777776666667777777777777777777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 045674 586 CKLADGIVDREREIPGKIRTALINALRKAG 615 (650)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 615 (650)
++.|+++++.+ |.+......|-.+-.+.+
T Consensus 169 ~~aykKaLeld-P~Ne~~K~nL~~Ae~~l~ 197 (304)
T KOG0553|consen 169 IEAYKKALELD-PDNESYKSNLKIAEQKLN 197 (304)
T ss_pred HHHHHhhhccC-CCcHHHHHHHHHHHHHhc
Confidence 77777777654 333433344444333333
No 139
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.56 E-value=0.0017 Score=67.17 Aligned_cols=223 Identities=13% Similarity=0.076 Sum_probs=148.7
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH
Q 045674 158 ALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKS--FGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMFIES 235 (650)
Q Consensus 158 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 235 (650)
...++|..|..-.+.+.++ .|+.. +...+.+ +.+.|+.++|..+++.....+.. |..|...+-.+|...++.++
T Consensus 20 ld~~qfkkal~~~~kllkk--~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK--HPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH--CCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence 4567889999999998887 33433 3334444 46889999999999988776555 88899999999999999999
Q ss_pred HHHHHHHHhcCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-C---------HHH
Q 045674 236 SELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEG-D---------FDS 305 (650)
Q Consensus 236 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~---------~~~ 305 (650)
|..++++.... .|+......+..+|.+.+++.+-.+.--++-+. .+-+.+.+-+++..+...- . ..-
T Consensus 96 ~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~L 172 (932)
T KOG2053|consen 96 AVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLAL 172 (932)
T ss_pred HHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHH
Confidence 99999999865 567777777888888888776544333333332 2334455555555444321 1 234
Q ss_pred HHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHH-HHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 045674 306 CLSLYHEMDEKG-IEIPSHAYNLVIGGLCKVGKCIEGHAIFE-SMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERM 383 (650)
Q Consensus 306 a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 383 (650)
|.+.++.+.+.+ ......-...-...+...|++++|.+++. ...+.-..-+...-+.-+..+...+++.+..++-.++
T Consensus 173 A~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 173 AEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 666667766654 22122222333445567888999999983 3333322334444455667778888888888888888
Q ss_pred HHCC
Q 045674 384 KYEG 387 (650)
Q Consensus 384 ~~~~ 387 (650)
...|
T Consensus 253 l~k~ 256 (932)
T KOG2053|consen 253 LEKG 256 (932)
T ss_pred HHhC
Confidence 8764
No 140
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.55 E-value=2.9e-06 Score=68.79 Aligned_cols=102 Identities=14% Similarity=0.060 Sum_probs=70.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---CHHHHHHH
Q 045674 534 SFRALSIGLCLSGKVARACKILDELAPKGIIP---ETAFEDMITCLCKTGRIKEACKLADGIVDREREI---PGKIRTAL 607 (650)
Q Consensus 534 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l 607 (650)
++..++..+...|++++|.+.++.+....+.+ ..++..++.++...|++++|.+.++.++... +. ...++..+
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~ 82 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY-PKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC-CCCCcccHHHHHH
Confidence 45566666777777777777777777665542 4566667777777777777777777777653 22 24566677
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCChh
Q 045674 608 INALRKAGNADLAIKLMHSKIGVGYDRMG 636 (650)
Q Consensus 608 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 636 (650)
+.++.+.|++++|...++++++..+....
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 77777777888888888877777666543
No 141
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.52 E-value=4.4e-06 Score=80.84 Aligned_cols=120 Identities=15% Similarity=0.125 Sum_probs=70.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHH
Q 045674 504 INGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIK 583 (650)
Q Consensus 504 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 583 (650)
+..+...++++.|+.+++++.+.. |+ ....+++.+...++-.+|.++++++++..+.+...+...+..|...++++
T Consensus 176 l~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~ 251 (395)
T PF09295_consen 176 LKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYE 251 (395)
T ss_pred HHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Confidence 333444556666666666665542 23 22335555555566666666666666655556666666666666666666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045674 584 EACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKI 628 (650)
Q Consensus 584 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 628 (650)
.|+++.+++.+.. |.+-.+|..|+.+|...|+++.|+-.++.+-
T Consensus 252 lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 252 LALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 6666666666654 4455566666666666666666666665544
No 142
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=2.4e-05 Score=72.94 Aligned_cols=341 Identities=13% Similarity=-0.015 Sum_probs=168.1
Q ss_pred HHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 045674 261 GYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIE 340 (650)
Q Consensus 261 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 340 (650)
.+.+..++.+|+..+....+... .+..-|..-+..+...|+++++.--.+.-++.... ..........++...++..+
T Consensus 58 ~~yk~k~Y~nal~~yt~Ai~~~p-d~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-~~k~~~r~~~c~~a~~~~i~ 135 (486)
T KOG0550|consen 58 AFYKQKTYGNALKNYTFAIDMCP-DNASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-FSKGQLREGQCHLALSDLIE 135 (486)
T ss_pred hHHHHhhHHHHHHHHHHHHHhCc-cchhhhchhHHHHHHHHhHhhcccchhhheecCCC-ccccccchhhhhhhhHHHHH
Confidence 44555666666666666666532 23445555555666666666666555444433211 12233333344444444444
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHhHHHHH-HHHHhcCCHHHHHHHHHHH
Q 045674 341 GHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGV-EPDEVTYGVII-SGLCKNERLEEAMQYFEFC 418 (650)
Q Consensus 341 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~p~~~~~~~l~-~~~~~~g~~~~a~~~~~~~ 418 (650)
|.+.++. ...+ ....++..++.+..... .|...++..+- .++.-.|++++|.+.--.+
T Consensus 136 A~~~~~~---------~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~i 195 (486)
T KOG0550|consen 136 AEEKLKS---------KQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDI 195 (486)
T ss_pred HHHHhhh---------hhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHH
Confidence 4444431 0001 11122222222222111 12223333222 2334456666666655555
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-------------HHHHHHHHHHHcCCHHHHHHHH
Q 045674 419 RANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSY-------------CYNVLIDALAKCGKLDEALALF 485 (650)
Q Consensus 419 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------------~~~~l~~~~~~~g~~~~A~~~~ 485 (650)
.+.+.. +......-..++.-.++.+.|...|++.+..+ |+.. .+..-++-..+.|++..|.+.|
T Consensus 196 lkld~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Y 272 (486)
T KOG0550|consen 196 LKLDAT-NAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECY 272 (486)
T ss_pred Hhcccc-hhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHH
Confidence 544322 22222222233344556666666666666543 2221 1222234456788888888888
Q ss_pred HHHHHcC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 045674 486 KRMEDEG---CDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKG 562 (650)
Q Consensus 486 ~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 562 (650)
.+.+... ..++...|.....+..+.|+.++|+.--+++.+.... -...+..-+.++...+++++|.+.++++.+..
T Consensus 273 teal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s-yikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 273 TEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS-YIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 8887653 3355566666666777888888888888777764211 12233344556667788888888888887654
Q ss_pred CC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH---HhcCCHHHHHHHHHHHH
Q 045674 563 II--PETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINAL---RKAGNADLAIKLMHSKI 628 (650)
Q Consensus 563 ~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~ 628 (650)
.. ....+.....++-+..+.+- .+++--.......+....|..++-.+ ...|.-.+|...|+++-
T Consensus 352 ~s~e~r~~l~~A~~aLkkSkRkd~-ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevg 421 (486)
T KOG0550|consen 352 KDCEIRRTLREAQLALKKSKRKDW-YKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVG 421 (486)
T ss_pred cccchHHHHHHHHHHHHHhhhhhH-HHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHH
Confidence 33 33444444444433322111 11111111112234445565554443 23455566666666543
No 143
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.50 E-value=1.8e-06 Score=84.17 Aligned_cols=106 Identities=11% Similarity=-0.014 Sum_probs=84.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCC
Q 045674 502 ILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGR 581 (650)
Q Consensus 502 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 581 (650)
..+..+...|++++|+.+|+++++..+. +...+..++.+|...|++++|+..+++++..++.+..+|..++.+|...|+
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 3455667788999999999998887555 677888888888889999999999999988888888888888999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 045674 582 IKEACKLADGIVDREREIPGKIRTALIN 609 (650)
Q Consensus 582 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 609 (650)
+++|+..|+++++.+ +.+..+...+..
T Consensus 86 ~~eA~~~~~~al~l~-P~~~~~~~~l~~ 112 (356)
T PLN03088 86 YQTAKAALEKGASLA-PGDSRFTKLIKE 112 (356)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 999999999988876 555555444433
No 144
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.50 E-value=2.6e-06 Score=65.90 Aligned_cols=97 Identities=14% Similarity=0.076 Sum_probs=68.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 045674 535 FRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKA 614 (650)
Q Consensus 535 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 614 (650)
+..++..+...|++++|..+++++.+..+.+...+..++.++...|++++|.+.++.+.+.. +.+..++..++..+...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHH
Confidence 34556666677777777777777777666666677777777777777777777777777664 44556677777777777
Q ss_pred CCHHHHHHHHHHHHHCCC
Q 045674 615 GNADLAIKLMHSKIGVGY 632 (650)
Q Consensus 615 g~~~~A~~~~~~~~~~~~ 632 (650)
|++++|...++++++.++
T Consensus 82 ~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 82 GKYEEALEAYEKALELDP 99 (100)
T ss_pred HhHHHHHHHHHHHHccCC
Confidence 777777777777766543
No 145
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.48 E-value=1.4e-05 Score=66.96 Aligned_cols=119 Identities=14% Similarity=0.102 Sum_probs=85.6
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHH
Q 045674 474 KCGKLDEALALFKRMEDEGCDQT--VYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTA--ASFRALSIGLCLSGKVA 549 (650)
Q Consensus 474 ~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~ 549 (650)
..++...+...++.+.+...... ....-.+...+...|++++|...|+.+.+....++. .....++.++...|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 47788888888888887644321 233334556777889999999999988876533332 23445678888899999
Q ss_pred HHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 045674 550 RACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIV 593 (650)
Q Consensus 550 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 593 (650)
+|+..++..... ...+..+...+.++...|++++|+..|++++
T Consensus 103 ~Al~~L~~~~~~-~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 103 EALATLQQIPDE-AFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHhccCc-chHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 999998774322 2356677888999999999999999988763
No 146
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.48 E-value=2.5e-06 Score=76.33 Aligned_cols=131 Identities=14% Similarity=-0.012 Sum_probs=99.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 045674 468 LIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGK 547 (650)
Q Consensus 468 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 547 (650)
-+.-+.+.++|.+|+..|.++++..+. |.+.|..-..+|.+.|.++.|++-.+..+..++. ...+|..|+.+|...|+
T Consensus 87 eGN~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 87 EGNKLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCc
Confidence 355677888999999999999987554 7777888888899999999999988888875433 45688889999999999
Q ss_pred HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCCCC
Q 045674 548 VARACKILDELAPKGIIPETAFEDMITCLCKTGRIK---EACKLADGIVDREREIP 600 (650)
Q Consensus 548 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~ 600 (650)
+++|++.|+++++.+|.+......|-.+-.+.+... .+..-++-....+..|+
T Consensus 165 ~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd 220 (304)
T KOG0553|consen 165 YEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPD 220 (304)
T ss_pred HHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCcc
Confidence 999999999999998888877777766666655544 44455555544453343
No 147
>PF12854 PPR_1: PPR repeat
Probab=98.47 E-value=2.2e-07 Score=54.69 Aligned_cols=32 Identities=56% Similarity=1.022 Sum_probs=16.8
Q ss_pred CCCCChhhHHHHHHHHHHcCChhHHHHHHHHH
Q 045674 247 KVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAM 278 (650)
Q Consensus 247 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 278 (650)
|+.||..+|++||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34455555555555555555555555555544
No 148
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.47 E-value=1.1e-05 Score=78.05 Aligned_cols=121 Identities=14% Similarity=0.173 Sum_probs=67.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 045674 467 VLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSG 546 (650)
Q Consensus 467 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 546 (650)
.|+..+...++++.|+.+|+++.+.. |+ ....++..+...++..+|.+++++.++..+. +...+...+..+...+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcC
Confidence 34444444555666666666665542 22 2233455555555556666666666544332 4555555555556666
Q ss_pred CHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045674 547 KVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGI 592 (650)
Q Consensus 547 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 592 (650)
+++.|+++.+++.+..|.+...|..|+.+|...|++++|+-.++.+
T Consensus 249 ~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 249 KYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred CHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 6666666666666665556666666666666666666666555443
No 149
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=2e-05 Score=73.39 Aligned_cols=159 Identities=15% Similarity=0.066 Sum_probs=111.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH-------------HH
Q 045674 435 DGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYT-------------YT 501 (650)
Q Consensus 435 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-------------~~ 501 (650)
.++.-.++.++|..+--..++.+ ..+......-..++.-.++.+.|...|++.+..++. ... +.
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpd--h~~sk~~~~~~k~le~~k 253 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPD--HQKSKSASMMPKKLEVKK 253 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhccChh--hhhHHhHhhhHHHHHHHH
Confidence 45566788888888887777764 445555555555566678888999999888876432 221 11
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHH
Q 045674 502 ILINGMFKEHRNEEALKLWDMMIDK---GITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCK 578 (650)
Q Consensus 502 ~l~~~~~~~~~~~~A~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 578 (650)
.=+.-..+.|++.+|.+.|.+.+.. +..++...|...+.+..+.|+.++|+.--+++.+.++.-...+..-+.|+..
T Consensus 254 ~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~ 333 (486)
T KOG0550|consen 254 ERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLA 333 (486)
T ss_pred hhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHH
Confidence 1222345678888888888888754 3344555666666777788888888888888888766666667777788888
Q ss_pred cCCHHHHHHHHHHHHHcC
Q 045674 579 TGRIKEACKLADGIVDRE 596 (650)
Q Consensus 579 ~g~~~~A~~~~~~~~~~~ 596 (650)
.++|++|.+.++++.+..
T Consensus 334 le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 334 LEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 888888888888888764
No 150
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.42 E-value=8.7e-06 Score=66.48 Aligned_cols=97 Identities=12% Similarity=-0.020 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Q 045674 498 YTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLC 577 (650)
Q Consensus 498 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 577 (650)
...-.+...+...|++++|..+|+-.....+. +..-|..|+-++-..|++++|+..|..+...+++++..+.+++.++.
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 33445556667888999999888888876554 66777888888888899999999999999888888888889999999
Q ss_pred HcCCHHHHHHHHHHHHHc
Q 045674 578 KTGRIKEACKLADGIVDR 595 (650)
Q Consensus 578 ~~g~~~~A~~~~~~~~~~ 595 (650)
..|+.+.|++.|+.++..
T Consensus 115 ~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 999999999998888765
No 151
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=1.5e-05 Score=72.01 Aligned_cols=100 Identities=14% Similarity=0.079 Sum_probs=51.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHhhCCCCcHHHHHHH
Q 045674 496 TVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSG---KVARACKILDELAPKGIIPETAFEDM 572 (650)
Q Consensus 496 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~l 572 (650)
|...|..|+.+|...|+++.|..-|.++.+...+ +...+..++.++..+. ...++..+|++++..++.+......|
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lL 233 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLL 233 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHH
Confidence 5555555555555555555555555555544222 4444444444443322 23445555555555555555555555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcC
Q 045674 573 ITCLCKTGRIKEACKLADGIVDRE 596 (650)
Q Consensus 573 ~~~~~~~g~~~~A~~~~~~~~~~~ 596 (650)
+..+...|++.+|...|+.|++..
T Consensus 234 A~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 234 AFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHcccHHHHHHHHHHHHhcC
Confidence 555555555555555555555543
No 152
>PF12854 PPR_1: PPR repeat
Probab=98.39 E-value=5.8e-07 Score=52.86 Aligned_cols=32 Identities=47% Similarity=0.830 Sum_probs=19.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 045674 492 GCDQTVYTYTILINGMFKEHRNEEALKLWDMM 523 (650)
Q Consensus 492 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 523 (650)
|+.||..+|+.|+.+|++.|+.++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45566666666666666666666666666655
No 153
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.38 E-value=1.4e-05 Score=78.06 Aligned_cols=107 Identities=12% Similarity=-0.028 Sum_probs=81.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 045674 467 VLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSG 546 (650)
Q Consensus 467 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 546 (650)
..+..+...|++++|+..|+++++..+. +...|..+..+|...|++++|+..++++++..+. +...+..++.+|...|
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhC
Confidence 3455667778888888888888887554 6777777888888888888888888888876544 6667778888888888
Q ss_pred CHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Q 045674 547 KVARACKILDELAPKGIIPETAFEDMITC 575 (650)
Q Consensus 547 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 575 (650)
++++|+..|+++++.++.+..+...+..+
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 88888888888888877776665555444
No 154
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.36 E-value=9.4e-07 Score=66.04 Aligned_cols=81 Identities=21% Similarity=0.280 Sum_probs=51.9
Q ss_pred cCCHHHHHHHHHHHhhCCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 045674 545 SGKVARACKILDELAPKGII--PETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIK 622 (650)
Q Consensus 545 ~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 622 (650)
.|++++|+.+++++.+..+. +...+..++.++.+.|++++|+.++++ .+.+ +.+......++.+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 46777777777777766553 344555577777777777777777776 3332 2333455556777777777777777
Q ss_pred HHHHH
Q 045674 623 LMHSK 627 (650)
Q Consensus 623 ~~~~~ 627 (650)
.++++
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 77653
No 155
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.32 E-value=0.00025 Score=58.67 Aligned_cols=131 Identities=17% Similarity=0.074 Sum_probs=83.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--cHHHHHHH
Q 045674 495 QTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGII--PETAFEDM 572 (650)
Q Consensus 495 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l 572 (650)
|+...-..|..++.+.|++.||...|++....-..-|...+..++++....++..+|...++++.+..+. .++....+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 4555555666666677777777777776665444456666666666777777777777777777666554 55555666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 045674 573 ITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSK 627 (650)
Q Consensus 573 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 627 (650)
+..|...|++.+|+..|+.++.. .|+......+...+.++|+..+|..-+..+
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 66777777777777777766643 455555555666666677666655444433
No 156
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.30 E-value=3.1e-05 Score=62.71 Aligned_cols=98 Identities=16% Similarity=0.095 Sum_probs=62.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC---cHHHHHHHH
Q 045674 499 TYTILINGMFKEHRNEEALKLWDMMIDKGIT--PTAASFRALSIGLCLSGKVARACKILDELAPKGII---PETAFEDMI 573 (650)
Q Consensus 499 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~ 573 (650)
++..++..+...|++++|.+.++++.+..+. .....+..++.++...|++++|...++.+....|. ...++..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3445555666667777777777776654322 11334555666777777777777777777765544 245666677
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcC
Q 045674 574 TCLCKTGRIKEACKLADGIVDRE 596 (650)
Q Consensus 574 ~~~~~~g~~~~A~~~~~~~~~~~ 596 (650)
.++...|++++|.+.++++++..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHC
Confidence 77777777777777777777664
No 157
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.29 E-value=1.5e-06 Score=64.94 Aligned_cols=82 Identities=22% Similarity=0.284 Sum_probs=52.9
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 045674 510 EHRNEEALKLWDMMIDKGIT-PTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKL 588 (650)
Q Consensus 510 ~~~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 588 (650)
.|+++.|+.+++++.+..+. ++...+..++.++.+.|++++|..++++ .+.++.+......++.++.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 46777777777777765432 2344555567777777777777777777 444444555555667777777777777777
Q ss_pred HHHH
Q 045674 589 ADGI 592 (650)
Q Consensus 589 ~~~~ 592 (650)
++++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 7653
No 158
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.27 E-value=5.4e-05 Score=65.71 Aligned_cols=83 Identities=13% Similarity=0.110 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Q 045674 499 TYTILINGMFKEHRNEEALKLWDMMIDKGITPT--AASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCL 576 (650)
Q Consensus 499 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 576 (650)
.+..++..+...|++++|...|+++++....+. ...+..++.++.+.|++++|...++++++..+.+...+..++.++
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 344445555555555555555555554322221 234555555566666666666666666655555555555555555
Q ss_pred HHcCC
Q 045674 577 CKTGR 581 (650)
Q Consensus 577 ~~~g~ 581 (650)
...|+
T Consensus 117 ~~~g~ 121 (172)
T PRK02603 117 HKRGE 121 (172)
T ss_pred HHcCC
Confidence 55555
No 159
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.27 E-value=2e-05 Score=73.23 Aligned_cols=286 Identities=17% Similarity=0.150 Sum_probs=154.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCcC----HHHHHHHHHHHHhcCCHHHHHHHHHHHH--H--CCCCC-CHHhHHHHH
Q 045674 329 IGGLCKVGKCIEGHAIFESMIRRGCQPN----VAIYTALIDSYAKLGSMNEAINIFERMK--Y--EGVEP-DEVTYGVII 399 (650)
Q Consensus 329 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~--~~~~p-~~~~~~~l~ 399 (650)
..-+|+.|+......+|+..++.|.. | ..+|..|..+|.-.+++++|+++-..=. . .|-+. ...+-..+.
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLG 102 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLG 102 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccccc
Confidence 45678888888889999888887643 3 3466777777777888888887543210 0 01010 122333344
Q ss_pred HHHHhcCCHHHHHHHHHH----HHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 045674 400 SGLCKNERLEEAMQYFEF----CRANGVAV-NAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAK 474 (650)
Q Consensus 400 ~~~~~~g~~~~a~~~~~~----~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 474 (650)
..+--.|.+++|+....+ ..+.|-.. ....+..+...|...|+.-... .-.+.|-.++. +-
T Consensus 103 NtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~----~pee~g~f~~e-v~--------- 168 (639)
T KOG1130|consen 103 NTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLE----APEEKGAFNAE-VT--------- 168 (639)
T ss_pred chhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCC----ChhhcccccHH-HH---------
Confidence 445556666666554432 22222111 1223333444444443211000 00000000000 00
Q ss_pred cCCHHHHHHHHHHHH----HcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCC-CCHHHHHHHHHHHHh
Q 045674 475 CGKLDEALALFKRME----DEGCD-QTVYTYTILINGMFKEHRNEEALKLWDMMI----DKGIT-PTAASFRALSIGLCL 544 (650)
Q Consensus 475 ~g~~~~A~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~-p~~~~~~~l~~~~~~ 544 (650)
..++.|.++|.+=+ +.|-. ..-..|..|+..|.-.|+++.|+...+.-+ +.|-. .....+..++.++.-
T Consensus 169 -~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hif 247 (639)
T KOG1130|consen 169 -SALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIF 247 (639)
T ss_pred -HHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhh
Confidence 01222333332211 11100 012345566666777788888876655432 22322 123456677888888
Q ss_pred cCCHHHHHHHHHHHh----hCCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHh
Q 045674 545 SGKVARACKILDELA----PKGII--PETAFEDMITCLCKTGRIKEACKLADGIVDRE-----REIPGKIRTALINALRK 613 (650)
Q Consensus 545 ~g~~~~A~~~~~~~~----~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~ 613 (650)
.|+++.|.+.|+... +.|-. .......|+..|.-..++++|+.++.+-+... .--...++..|+.++..
T Consensus 248 lg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~a 327 (639)
T KOG1130|consen 248 LGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNA 327 (639)
T ss_pred hcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 888888888887755 33333 44566778888888888888888877654321 11234566778888888
Q ss_pred cCCHHHHHHHHHHHHHC
Q 045674 614 AGNADLAIKLMHSKIGV 630 (650)
Q Consensus 614 ~g~~~~A~~~~~~~~~~ 630 (650)
.|..++|..+.+..++.
T Consensus 328 lg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 328 LGEHRKALYFAELHLRS 344 (639)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 88888888887766654
No 160
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.26 E-value=8.5e-05 Score=75.69 Aligned_cols=83 Identities=16% Similarity=0.111 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhhC--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 045674 549 ARACKILDELAPK--GIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHS 626 (650)
Q Consensus 549 ~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 626 (650)
..+.+..+++... .+.++.++..++......|++++|...++++++.+ |+...|..++..+...|+.++|.+.+++
T Consensus 401 ~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~ 478 (517)
T PRK10153 401 AALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYST 478 (517)
T ss_pred HHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3444444444332 33355666666666666777777777777777765 4666777777777777777777777777
Q ss_pred HHHCCCC
Q 045674 627 KIGVGYD 633 (650)
Q Consensus 627 ~~~~~~~ 633 (650)
++..++.
T Consensus 479 A~~L~P~ 485 (517)
T PRK10153 479 AFNLRPG 485 (517)
T ss_pred HHhcCCC
Confidence 7777665
No 161
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.25 E-value=4.8e-06 Score=59.52 Aligned_cols=65 Identities=15% Similarity=0.147 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCC
Q 045674 566 ETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAG-NADLAIKLMHSKIGVG 631 (650)
Q Consensus 566 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~ 631 (650)
+..|..++..+...|++++|+..|+++++.+ +.+..+|..++.+|...| ++++|++.++++++..
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 4455556666666666666666666666654 445556666666666666 4666666666665543
No 162
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.23 E-value=2.8e-05 Score=59.97 Aligned_cols=95 Identities=17% Similarity=0.155 Sum_probs=68.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHc
Q 045674 500 YTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKT 579 (650)
Q Consensus 500 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 579 (650)
+..++..+...|++++|...++++.+.... +...+..++.++...|++++|.+.++.+....+.+...+..++.++...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 445556666777777777777777765332 3456666777777778888888888887777666667777788888888
Q ss_pred CCHHHHHHHHHHHHHc
Q 045674 580 GRIKEACKLADGIVDR 595 (650)
Q Consensus 580 g~~~~A~~~~~~~~~~ 595 (650)
|++++|...++++.+.
T Consensus 82 ~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 82 GKYEEALEAYEKALEL 97 (100)
T ss_pred HhHHHHHHHHHHHHcc
Confidence 8888888888777654
No 163
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.19 E-value=9.6e-06 Score=57.06 Aligned_cols=57 Identities=16% Similarity=0.131 Sum_probs=30.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 045674 539 SIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDR 595 (650)
Q Consensus 539 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 595 (650)
+..+...|++++|.+.|+++++..|.+..++..++.++...|++++|..+|+++++.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555555555555555555555555544
No 164
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.17 E-value=4.1e-05 Score=66.23 Aligned_cols=81 Identities=15% Similarity=0.094 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHH
Q 045674 497 VYTYTILINGMFKEHRNEEALKLWDMMIDKGITP--TAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMIT 574 (650)
Q Consensus 497 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 574 (650)
...|..++..+...|++++|+..|++++.....+ ...++..++.++...|++++|.+.++++....+.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 3344555555556666666666666665543222 12355666666666666666666666666655555555555555
Q ss_pred HHH
Q 045674 575 CLC 577 (650)
Q Consensus 575 ~~~ 577 (650)
++.
T Consensus 115 i~~ 117 (168)
T CHL00033 115 ICH 117 (168)
T ss_pred HHH
Confidence 555
No 165
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.17 E-value=5.7e-05 Score=65.57 Aligned_cols=102 Identities=13% Similarity=0.051 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 045674 532 AASFRALSIGLCLSGKVARACKILDELAPKGII---PETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALI 608 (650)
Q Consensus 532 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 608 (650)
...+..++..+...|++++|..+++++++..+. ....+..++.++...|++++|+..++++++.. +.+...+..++
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 446778888899999999999999999976554 24688999999999999999999999999875 66777888889
Q ss_pred HHHHhcCC--------------HHHHHHHHHHHHHCCCCC
Q 045674 609 NALRKAGN--------------ADLAIKLMHSKIGVGYDR 634 (650)
Q Consensus 609 ~~~~~~g~--------------~~~A~~~~~~~~~~~~~~ 634 (650)
.++...|+ +++|.+.++++++.++..
T Consensus 114 ~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 99988887 577888888888877664
No 166
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=0.00015 Score=65.76 Aligned_cols=117 Identities=9% Similarity=-0.038 Sum_probs=95.1
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHH
Q 045674 518 KLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGR---IKEACKLADGIVD 594 (650)
Q Consensus 518 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~ 594 (650)
.-++.-+..++. |...|..|+..|...|+.+.|..-|.++.+..+++++.+..+++++....+ ..++.+++++++.
T Consensus 143 a~Le~~L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~ 221 (287)
T COG4235 143 ARLETHLQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALA 221 (287)
T ss_pred HHHHHHHHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh
Confidence 333444455555 888899999999999999999999999999888889988888888876543 6778899999998
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCChh
Q 045674 595 REREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYDRMG 636 (650)
Q Consensus 595 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 636 (650)
.+ +.|..+...|+..++..|++.+|...|+.|++..+..+.
T Consensus 222 ~D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 222 LD-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred cC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 87 778888888888999999999999999999988776443
No 167
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.14 E-value=1.1e-05 Score=56.69 Aligned_cols=62 Identities=16% Similarity=0.160 Sum_probs=56.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 045674 571 DMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYD 633 (650)
Q Consensus 571 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 633 (650)
.++..+...|++++|++.|+++++.. |.+..++..++.++...|++++|+..++++++..|.
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 46788999999999999999999987 778899999999999999999999999999998765
No 168
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.13 E-value=5.8e-05 Score=65.29 Aligned_cols=113 Identities=10% Similarity=0.016 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC---cHHHHHHHHHHHHHcCCHHHHHHH
Q 045674 513 NEEALKLWDMMIDK-GITPTAASFRALSIGLCLSGKVARACKILDELAPKGII---PETAFEDMITCLCKTGRIKEACKL 588 (650)
Q Consensus 513 ~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~ 588 (650)
+..+...+..+.+. +-.-....+..++..+...|++++|...+++++...+. ...++..++.++...|++++|++.
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 44455555555322 22223456677888888999999999999999877554 345889999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHH-------hcCCHHHHHHHHHH
Q 045674 589 ADGIVDREREIPGKIRTALINALR-------KAGNADLAIKLMHS 626 (650)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~~~A~~~~~~ 626 (650)
++++++.. +.....+..++.++. ..|++++|...+++
T Consensus 95 ~~~Al~~~-~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 95 YFQALERN-PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHHhC-cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 99999875 556777777787777 78887755444443
No 169
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.13 E-value=1.3e-05 Score=57.31 Aligned_cols=66 Identities=14% Similarity=0.104 Sum_probs=58.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcC
Q 045674 531 TAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTG-RIKEACKLADGIVDRE 596 (650)
Q Consensus 531 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~ 596 (650)
+...|..++..+...|++++|+..|+++++.++.+..++..++.++...| ++++|++.++++++.+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 46678888889999999999999999999998888999999999999999 7999999999988764
No 170
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.12 E-value=7.7e-05 Score=68.65 Aligned_cols=93 Identities=11% Similarity=-0.036 Sum_probs=61.9
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCC
Q 045674 543 CLSGKVARACKILDELAPKGIIP---ETAFEDMITCLCKTGRIKEACKLADGIVDREREI---PGKIRTALINALRKAGN 616 (650)
Q Consensus 543 ~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~ 616 (650)
.+.|++++|...|+.+++..|.+ +.++..++.+|...|++++|...|+++++.. |. ...++..++.++...|+
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-P~s~~~~dAl~klg~~~~~~g~ 232 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-PKSPKAADAMFKVGVIMQDKGD 232 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCcchhHHHHHHHHHHHHcCC
Confidence 45577777777777777766663 4566677777777777777777777777542 22 24555556666777777
Q ss_pred HHHHHHHHHHHHHCCCCChh
Q 045674 617 ADLAIKLMHSKIGVGYDRMG 636 (650)
Q Consensus 617 ~~~A~~~~~~~~~~~~~~~~ 636 (650)
+++|+..|+++++..|....
T Consensus 233 ~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 233 TAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHHHHHHHHHCcCCHH
Confidence 77777777777776665443
No 171
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.10 E-value=0.00011 Score=58.13 Aligned_cols=90 Identities=19% Similarity=0.206 Sum_probs=39.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHH
Q 045674 538 LSIGLCLSGKVARACKILDELAPKGIIP---ETAFEDMITCLCKTGRIKEACKLADGIVDREREI---PGKIRTALINAL 611 (650)
Q Consensus 538 l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~ 611 (650)
+++++-..|+.++|+.+|+++...|... ...+..++..+...|++++|..++++..... +. +......++.++
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHH
Confidence 3444444444445555554444444331 2334444444445555555555554444331 11 222223333444
Q ss_pred HhcCCHHHHHHHHHHHH
Q 045674 612 RKAGNADLAIKLMHSKI 628 (650)
Q Consensus 612 ~~~g~~~~A~~~~~~~~ 628 (650)
...|+.++|++.+-..+
T Consensus 86 ~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 44455555544444433
No 172
>PRK15331 chaperone protein SicA; Provisional
Probab=98.10 E-value=0.00014 Score=59.91 Aligned_cols=86 Identities=10% Similarity=0.025 Sum_probs=42.0
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 045674 508 FKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACK 587 (650)
Q Consensus 508 ~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 587 (650)
...|++++|..+|.-+.-.++- +...+..|+.++-..+++++|+..|..+...++.|+......+.|+...|+.++|+.
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHH
Confidence 3445555555555544443322 334444444444455555555555555544444444444555555555555555555
Q ss_pred HHHHHHH
Q 045674 588 LADGIVD 594 (650)
Q Consensus 588 ~~~~~~~ 594 (650)
.|+.+++
T Consensus 127 ~f~~a~~ 133 (165)
T PRK15331 127 CFELVNE 133 (165)
T ss_pred HHHHHHh
Confidence 5555443
No 173
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.06 E-value=0.00017 Score=67.89 Aligned_cols=133 Identities=17% Similarity=0.076 Sum_probs=72.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Q 045674 499 TYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCL-SGKVARACKILDELAPKGIIPETAFEDMITCLC 577 (650)
Q Consensus 499 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 577 (650)
+|..++...-+.+..+.|..+|.++.+.+ ..+...|...+..-.+ .++.+.|.++|+..++..+.+...|...+..+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 45555555555555666666666665332 2234444444444333 344444666666666665556666666666666
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 045674 578 KTGRIKEACKLADGIVDREREIPG---KIRTALINALRKAGNADLAIKLMHSKIGVGYD 633 (650)
Q Consensus 578 ~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 633 (650)
..|+.+.|..+|++++.. ++.+. .+|...+..-.+.|+.+.+.++.+++.+.-+.
T Consensus 82 ~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 82 KLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp HTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred HhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 666666666666666654 12222 36666666666666666666666666665333
No 174
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.04 E-value=0.00027 Score=55.87 Aligned_cols=91 Identities=21% Similarity=0.137 Sum_probs=66.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC---cHHHHHHHHHHHH
Q 045674 503 LINGMFKEHRNEEALKLWDMMIDKGITPT--AASFRALSIGLCLSGKVARACKILDELAPKGII---PETAFEDMITCLC 577 (650)
Q Consensus 503 l~~~~~~~~~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~ 577 (650)
+..++-..|+.++|+.+|++.+..|+... ...+..++..+...|++++|..++++.....|. +..+...++.++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 44556677888888888888887776643 345667777788888888888888888876565 4555555667778
Q ss_pred HcCCHHHHHHHHHHHH
Q 045674 578 KTGRIKEACKLADGIV 593 (650)
Q Consensus 578 ~~g~~~~A~~~~~~~~ 593 (650)
..|+.++|++.+-..+
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 8888888888776665
No 175
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.04 E-value=0.0019 Score=59.10 Aligned_cols=177 Identities=16% Similarity=0.096 Sum_probs=94.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 045674 433 LIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCY---NVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFK 509 (650)
Q Consensus 433 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 509 (650)
.+..+...|++++|.+.|+.+.... |.+.... ..++.+|.+.+++++|...+++.++..+.....-+...+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence 4444555666666666666666642 2222222 34555566666666666666666665433222222222222211
Q ss_pred --c---------------CC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHH
Q 045674 510 --E---------------HR---NEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAF 569 (650)
Q Consensus 510 --~---------------~~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 569 (650)
. .+ ..+|+..|+.+++.- |+. .-..+|...+..+.+. -...-
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y--P~S-------------~ya~~A~~rl~~l~~~---la~~e 178 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY--PNS-------------QYTTDATKRLVFLKDR---LAKYE 178 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC--cCC-------------hhHHHHHHHHHHHHHH---HHHHH
Confidence 1 01 123444455554431 221 1223333333333221 11222
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045674 570 EDMITCLCKTGRIKEACKLADGIVDRE--REIPGKIRTALINALRKAGNADLAIKLMHSKI 628 (650)
Q Consensus 570 ~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 628 (650)
..++..|.+.|.+..|+.-++.+++.- .+...+++..++.+|.+.|..++|.++...+.
T Consensus 179 ~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 179 LSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 356777888888888888888888752 11235567778888888888888888776654
No 176
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.04 E-value=1.6e-05 Score=56.65 Aligned_cols=54 Identities=19% Similarity=0.261 Sum_probs=40.2
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 045674 543 CLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDRE 596 (650)
Q Consensus 543 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 596 (650)
...|++++|+++|+++....|.+..++..++.+|.+.|++++|.++++++....
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 456777777777777777777777777777777777777777777777777664
No 177
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.02 E-value=0.0013 Score=62.24 Aligned_cols=94 Identities=18% Similarity=0.158 Sum_probs=49.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----CCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-----cHHH
Q 045674 500 YTILINGMFKEHRNEEALKLWDMMIDKGIT-----PTA-ASFRALSIGLCLSGKVARACKILDELAPKGII-----PETA 568 (650)
Q Consensus 500 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~ 568 (650)
+..++..+.+.|++++|.++|+++...... .+. ..+...+-++...|+...|.+.+++.....|. ....
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~ 237 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKF 237 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHH
Confidence 344455566677777777777766643221 111 12233344555667777777777777765442 2334
Q ss_pred HHHHHHHHHH--cCCHHHHHHHHHHHH
Q 045674 569 FEDMITCLCK--TGRIKEACKLADGIV 593 (650)
Q Consensus 569 ~~~l~~~~~~--~g~~~~A~~~~~~~~ 593 (650)
...|+.++-. ...+.+|+.-|+.+.
T Consensus 238 ~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 238 LEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 4555555543 234666666666554
No 178
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.98 E-value=0.018 Score=55.11 Aligned_cols=84 Identities=13% Similarity=0.130 Sum_probs=65.1
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 045674 143 YSHNLECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNF 222 (650)
Q Consensus 143 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 222 (650)
.|.+.-+|..++.-|..+|..++.+++++++..- ++.-..+|..-+.+-....++.....+|.++.... .+...|..
T Consensus 38 NPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~--l~ldLW~l 114 (660)
T COG5107 38 NPTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS--LNLDLWML 114 (660)
T ss_pred CchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh--ccHhHHHH
Confidence 4668889999999999999999999999998753 45556778888877777788889999999988763 35666666
Q ss_pred HHHHHHh
Q 045674 223 LMNGLVN 229 (650)
Q Consensus 223 ll~~~~~ 229 (650)
.+....+
T Consensus 115 Yl~YIRr 121 (660)
T COG5107 115 YLEYIRR 121 (660)
T ss_pred HHHHHHh
Confidence 6655443
No 179
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.98 E-value=0.00085 Score=68.57 Aligned_cols=138 Identities=14% Similarity=0.054 Sum_probs=63.6
Q ss_pred CCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHH
Q 045674 424 AVNAMFYSSLIDGLGKA-----GRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCG--------KLDEALALFKRMED 490 (650)
Q Consensus 424 ~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~~~~ 490 (650)
..+...|...+.+.... ++.+.|..+|+++++.. |.....+..+..+|.... ++..+.+..++...
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 33555555555543322 12556666666666654 334444444433332211 11222222222222
Q ss_pred c-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 045674 491 E-GCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGII 564 (650)
Q Consensus 491 ~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 564 (650)
. ....+...|..+.......|++++|...++++++.+ |+...|..++..+...|+.++|.+.++++...+|.
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 1 011233444444444444555555555555555543 34445555555555555555555555555555554
No 180
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.97 E-value=0.00013 Score=68.06 Aligned_cols=132 Identities=13% Similarity=0.069 Sum_probs=80.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cC-CCCCHH
Q 045674 394 TYGVIISGLCKNERLEEAMQYFEFCR----ANGVA-VNAMFYSSLIDGLGKAGRVDEAEELFEEMVE----KG-CPRDSY 463 (650)
Q Consensus 394 ~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~-~~~~~~ 463 (650)
.|..+...|.-.|+++.|+...+.-+ +.|-. .....+..+.+++.-.|+++.|.+.|+.... .| -.....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 45555566666777877776654322 22211 1234566677777777888888777765443 22 123345
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045674 464 CYNVLIDALAKCGKLDEALALFKRMEDE-----GCDQTVYTYTILINGMFKEHRNEEALKLWDMMID 525 (650)
Q Consensus 464 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 525 (650)
..+.|.+.|.-..++++|+..+.+-+.. ...-....+..|..+|...|..++|+.+.+..++
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 5667777777777777777776654321 1112455677777777777888887777666553
No 181
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.93 E-value=0.0012 Score=62.54 Aligned_cols=26 Identities=15% Similarity=0.293 Sum_probs=12.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 045674 569 FEDMITCLCKTGRIKEACKLADGIVD 594 (650)
Q Consensus 569 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 594 (650)
+..++..+.+.|++++|+++|++...
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34444444555555555555544443
No 182
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.92 E-value=0.0087 Score=49.92 Aligned_cols=134 Identities=17% Similarity=0.099 Sum_probs=86.8
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHH
Q 045674 459 PRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGIT-PTAASFRA 537 (650)
Q Consensus 459 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-p~~~~~~~ 537 (650)
-|+...-..|...+.+.|++.+|...|++...--...|....-.+..+....+++.+|...++++-+..+. -++.....
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 35666666777777777777777777777766444456666667777777777777777777777664321 12233445
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 045674 538 LSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIV 593 (650)
Q Consensus 538 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 593 (650)
+++.+...|++++|..-|+.+....|. .......+..+.+.|+.++|..-+..+.
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 667777778887787777777776443 3344445566677777666655444443
No 183
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.91 E-value=0.0038 Score=57.20 Aligned_cols=173 Identities=12% Similarity=0.007 Sum_probs=97.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHc
Q 045674 401 GLCKNERLEEAMQYFEFCRANGVAVNAM--FYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRD---SYCYNVLIDALAKC 475 (650)
Q Consensus 401 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 475 (650)
.+...|++++|.+.|+.+....+..... ....++.++.+.+++++|...+++.++.. |.+ ..++..++.++...
T Consensus 41 ~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~-P~~~~~~~a~Y~~g~~~~~~ 119 (243)
T PRK10866 41 QKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYVLYMRGLTNMAL 119 (243)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-cCCCchHHHHHHHHHhhhhc
Confidence 3445566666666666655544332111 11234455566666666666666666542 111 11222222221111
Q ss_pred C---------------C---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 045674 476 G---------------K---LDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRA 537 (650)
Q Consensus 476 g---------------~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ 537 (650)
+ + ..+|+..|+++++.-+ +. .-..+|...+..+... -...-..
T Consensus 120 ~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP--~S-------------~ya~~A~~rl~~l~~~----la~~e~~ 180 (243)
T PRK10866 120 DDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYP--NS-------------QYTTDATKRLVFLKDR----LAKYELS 180 (243)
T ss_pred chhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCc--CC-------------hhHHHHHHHHHHHHHH----HHHHHHH
Confidence 1 1 2345566666666532 22 2234444433333221 0111125
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 045674 538 LSIGLCLSGKVARACKILDELAPKGII---PETAFEDMITCLCKTGRIKEACKLADGIV 593 (650)
Q Consensus 538 l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 593 (650)
++..|.+.|++..|..-++.+++..|. ..+++..++.+|...|..++|.++...+.
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 677789999999999999999988776 56788889999999999999998877654
No 184
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.89 E-value=0.023 Score=53.34 Aligned_cols=146 Identities=10% Similarity=0.025 Sum_probs=94.2
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH-HH
Q 045674 477 KLDEALALFKRMEDEGCDQTVYTY-TILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARAC-KI 554 (650)
Q Consensus 477 ~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~-~~ 554 (650)
+...|...-.+..+. .|+..-- ..-..++.+.|+..++-.+++.+-+..+.|+... ...+.+.|+..... +-
T Consensus 244 dp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~----lY~~ar~gdta~dRlkR 317 (531)
T COG3898 244 DPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIAL----LYVRARSGDTALDRLKR 317 (531)
T ss_pred ChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHH----HHHHhcCCCcHHHHHHH
Confidence 345555555555554 3333222 2334567788888888888888887755555321 22234555432221 22
Q ss_pred HHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHC
Q 045674 555 LDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALR-KAGNADLAIKLMHSKIGV 630 (650)
Q Consensus 555 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~ 630 (650)
..++....+.+.+....++++-...|++..|..--+.+... .|...+|..+++.-. ..|+-.+++.++-+.++-
T Consensus 318 a~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 318 AKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 33334455667788888888888889998888888877754 577777877777754 448999999998888864
No 185
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.87 E-value=0.029 Score=56.69 Aligned_cols=204 Identities=12% Similarity=0.069 Sum_probs=123.8
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHH----------HHcCChhHHHHHHHHHHhCCC
Q 045674 214 EPSLYTYNFLMNGLVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGY----------CKVGKTQKAMEKFRAMEARNV 283 (650)
Q Consensus 214 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~----------~~~g~~~~A~~~~~~~~~~~~ 283 (650)
.|....|..+.......-.++.|+..|-+...- +.+...-.|-... .--|++++|.++|-++-.++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY---~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY---AGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc---cchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh-
Confidence 567788888888777777778888777665531 2222211111111 11378888888887775442
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHH
Q 045674 284 QPDKITYMTLIQACYLEGDFDSCLSLYHEMDEK-GIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTA 362 (650)
Q Consensus 284 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 362 (650)
..+..+.+.|++-.+.++++.--.. ....-...++.+...+.....|++|.+.+..-... ..
T Consensus 765 --------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~ 827 (1189)
T KOG2041|consen 765 --------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------EN 827 (1189)
T ss_pred --------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------Hh
Confidence 2456667778887776665431110 00111356777888888888888888877653321 23
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 045674 363 LIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGR 442 (650)
Q Consensus 363 l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 442 (650)
.+.++.+..++++-..+-..+.+ +...+-.+..++...|.-++|.+.+-+.-. ++ ..+..|...++
T Consensus 828 ~~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~Lr~s~--pk-------aAv~tCv~LnQ 893 (1189)
T KOG2041|consen 828 QIECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAYLRRSL--PK-------AAVHTCVELNQ 893 (1189)
T ss_pred HHHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHHHhccC--cH-------HHHHHHHHHHH
Confidence 56666676667666655555442 455667777888888888888777643211 11 34455677777
Q ss_pred HHHHHHHHHH
Q 045674 443 VDEAEELFEE 452 (650)
Q Consensus 443 ~~~A~~~~~~ 452 (650)
+.+|.++-+.
T Consensus 894 W~~avelaq~ 903 (1189)
T KOG2041|consen 894 WGEAVELAQR 903 (1189)
T ss_pred HHHHHHHHHh
Confidence 7777766554
No 186
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.85 E-value=0.00054 Score=63.15 Aligned_cols=98 Identities=13% Similarity=0.081 Sum_probs=75.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC---cHHHHHHHH
Q 045674 499 TYTILINGMFKEHRNEEALKLWDMMIDKGITPT--AASFRALSIGLCLSGKVARACKILDELAPKGII---PETAFEDMI 573 (650)
Q Consensus 499 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~ 573 (650)
.|......+.+.|++++|+..|+.+++..+... ...+..++.+|...|++++|...|+.+++..|. .++++..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 344444434567888888888888887644321 356778888889999999999999999877665 567777788
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcC
Q 045674 574 TCLCKTGRIKEACKLADGIVDRE 596 (650)
Q Consensus 574 ~~~~~~g~~~~A~~~~~~~~~~~ 596 (650)
.++...|+.++|.++|+++++..
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC
Confidence 88889999999999999988764
No 187
>PRK15331 chaperone protein SicA; Provisional
Probab=97.85 E-value=0.0016 Score=53.73 Aligned_cols=91 Identities=9% Similarity=-0.083 Sum_probs=61.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 045674 538 LSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNA 617 (650)
Q Consensus 538 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 617 (650)
.+.-+...|++++|..+|.-+.-.++.+...|..|+.++-..+++++|+..|..+...+ ..|+......+.++...|+.
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCH
Confidence 34445567777777777777776666666667777777777777777777777666555 45555566667777777777
Q ss_pred HHHHHHHHHHHH
Q 045674 618 DLAIKLMHSKIG 629 (650)
Q Consensus 618 ~~A~~~~~~~~~ 629 (650)
+.|+..|+.+++
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 777777777766
No 188
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.83 E-value=0.0031 Score=56.26 Aligned_cols=51 Identities=18% Similarity=0.060 Sum_probs=33.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHH
Q 045674 570 EDMITCLCKTGRIKEACKLADGIVDREREIP---GKIRTALINALRKAGNADLAI 621 (650)
Q Consensus 570 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~ 621 (650)
..++..|.+.|.+..|..-++.+++.- |.. ..++..++.+|.+.|..+.|.
T Consensus 145 ~~ia~~Y~~~~~y~aA~~r~~~v~~~y-p~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 145 LYIARFYYKRGKYKAAIIRFQYVIENY-PDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHCTT-HHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHC-CCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 346777788888888888888887763 332 345566777888888777544
No 189
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.82 E-value=0.00066 Score=60.85 Aligned_cols=100 Identities=19% Similarity=0.095 Sum_probs=58.7
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcC
Q 045674 542 LCLSGKVARACKILDELAPKGII---PETAFEDMITCLCKTGRIKEACKLADGIVDREREI---PGKIRTALINALRKAG 615 (650)
Q Consensus 542 ~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g 615 (650)
+.+.|++.+|..-|...++..|. .+.++.-|++++...|++++|..+|..+.+.. +. -++.+..|+.+..+.|
T Consensus 151 ~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~-P~s~KApdallKlg~~~~~l~ 229 (262)
T COG1729 151 LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY-PKSPKAPDALLKLGVSLGRLG 229 (262)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhC-CCCCCChHHHHHHHHHHHHhc
Confidence 44556666666666666666555 34555556666666666666666666665542 21 2455556666666666
Q ss_pred CHHHHHHHHHHHHHCCCCChhhhhhhh
Q 045674 616 NADLAIKLMHSKIGVGYDRMGSIKRRV 642 (650)
Q Consensus 616 ~~~~A~~~~~~~~~~~~~~~~~~~~~~ 642 (650)
+.++|+..|+++++.-|..+......+
T Consensus 230 ~~d~A~atl~qv~k~YP~t~aA~~Ak~ 256 (262)
T COG1729 230 NTDEACATLQQVIKRYPGTDAAKLAKV 256 (262)
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 666666666666666665554444443
No 190
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.82 E-value=3.7e-05 Score=46.01 Aligned_cols=33 Identities=48% Similarity=0.985 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC
Q 045674 254 TYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPD 286 (650)
Q Consensus 254 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 286 (650)
+||.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 566666666666666666666666666666665
No 191
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.80 E-value=0.00013 Score=52.66 Aligned_cols=55 Identities=15% Similarity=0.120 Sum_probs=29.3
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 045674 541 GLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDR 595 (650)
Q Consensus 541 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 595 (650)
.|.+.+++++|.++++.++..+|.+...+...+.++...|++++|.+.++++++.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555555555555555555555544
No 192
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.78 E-value=0.058 Score=54.63 Aligned_cols=203 Identities=11% Similarity=0.081 Sum_probs=121.5
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH----------HHHHHcCCCHHHHHHHHHHHHHCCC
Q 045674 144 SHNLECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSL----------IKSFGGLGMVEELLWVWRSMKENGI 213 (650)
Q Consensus 144 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l----------~~~~~~~g~~~~a~~~~~~~~~~~~ 213 (650)
.|.+..|..++......-.++.|...|-+...- +.+.....| ...-+--|++++|.++|-++-.++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY---~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY---AGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc---cchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh-
Confidence 345677887877777777777777777665432 111111111 111122477888888877765542
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCC----hhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHH
Q 045674 214 EPSLYTYNFLMNGLVNSMFIESSELVFKVMENGKVGPD----VVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKIT 289 (650)
Q Consensus 214 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 289 (650)
.-+....+.|++-...++++.-- -..| ..+|+.+...+.....+++|.+.|..-.. .
T Consensus 765 --------LAielr~klgDwfrV~qL~r~g~---~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~------~-- 825 (1189)
T KOG2041|consen 765 --------LAIELRKKLGDWFRVYQLIRNGG---SDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD------T-- 825 (1189)
T ss_pred --------hhHHHHHhhhhHHHHHHHHHccC---CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------h--
Confidence 12344556676665555554321 1111 45678888888888888888888765421 1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh
Q 045674 290 YMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAK 369 (650)
Q Consensus 290 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 369 (650)
...+.++.+..++++-+.+...+ +.+....-.+..++.+.|..++|.+.|-+... |. .-+..|..
T Consensus 826 -e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----pk-----aAv~tCv~ 890 (1189)
T KOG2041|consen 826 -ENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----PK-----AAVHTCVE 890 (1189)
T ss_pred -HhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhccC----cH-----HHHHHHHH
Confidence 23456666666666655554443 33556677788888888888888877643321 12 23456777
Q ss_pred cCCHHHHHHHHHHHH
Q 045674 370 LGSMNEAINIFERMK 384 (650)
Q Consensus 370 ~~~~~~A~~~~~~~~ 384 (650)
.+++.+|.++-++..
T Consensus 891 LnQW~~avelaq~~~ 905 (1189)
T KOG2041|consen 891 LNQWGEAVELAQRFQ 905 (1189)
T ss_pred HHHHHHHHHHHHhcc
Confidence 778888887766543
No 193
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.77 E-value=0.033 Score=51.53 Aligned_cols=203 Identities=21% Similarity=0.181 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-
Q 045674 428 MFYSSLIDGLGKAGRVDEAEELFEEMVEK-GCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILIN- 505 (650)
Q Consensus 428 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~- 505 (650)
..+......+...+++..+...+...... ........+......+...+++..+...+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 34444555555555555555555555431 123344445555555555555666666666555533222 111222222
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-cHHHHHHHHHHHHHcCCH
Q 045674 506 GMFKEHRNEEALKLWDMMIDKGI--TPTAASFRALSIGLCLSGKVARACKILDELAPKGII-PETAFEDMITCLCKTGRI 582 (650)
Q Consensus 506 ~~~~~~~~~~A~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~ 582 (650)
.+...|++++|...+.++..... ......+......+...++.++|...+..+....+. ....+..++..+...+++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 45566666666666666644211 112223333333345566666666666666666555 456666666666666666
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 045674 583 KEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGY 632 (650)
Q Consensus 583 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 632 (650)
++|...+..+.... +.....+..+...+...|.++++...+.+.++..+
T Consensus 219 ~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 219 EEALEYYEKALELD-PDNAEALYNLALLLLELGRYEEALEALEKALELDP 267 (291)
T ss_pred HHHHHHHHHHHhhC-cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 66666666666543 22234444445555555566666666666666544
No 194
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.75 E-value=0.00077 Score=63.47 Aligned_cols=130 Identities=9% Similarity=0.025 Sum_probs=89.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 045674 149 CYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGG-LGMVEELLWVWRSMKENGIEPSLYTYNFLMNGL 227 (650)
Q Consensus 149 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 227 (650)
+|..+++..-+.+..+.|+.+|.++.+.+ ..+..+|...+..-.. .++.+.|..+|+...+. +..+...|...+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 56677777777777888888888887543 3345556555555333 56667788888888776 555777778888888
Q ss_pred HhcCChhHHHHHHHHHhcCCCCCCh---hhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 045674 228 VNSMFIESSELVFKVMENGKVGPDV---VTYNTMIKGYCKVGKTQKAMEKFRAMEAR 281 (650)
Q Consensus 228 ~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 281 (650)
...++.+.|..+|++.... +.++. ..|...+..-.+.|+.+.+..+.+++.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8888888888888888754 22222 37777777777778888888777777664
No 195
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.74 E-value=0.0062 Score=54.33 Aligned_cols=167 Identities=18% Similarity=0.089 Sum_probs=86.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHH-
Q 045674 401 GLCKNERLEEAMQYFEFCRANGVA--VNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDS---YCYNVLIDALAK- 474 (650)
Q Consensus 401 ~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~- 474 (650)
.+...|++++|...|+.+....+. ........++.++.+.|+++.|...+++.++.. |.+. ..+..++.++.+
T Consensus 14 ~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y-P~~~~~~~A~Y~~g~~~~~~ 92 (203)
T PF13525_consen 14 EALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY-PNSPKADYALYMLGLSYYKQ 92 (203)
T ss_dssp HHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--TT-TTHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCcchhhHHHHHHHHHHHh
Confidence 344555555555555555544222 112233345555556666666666666655542 1111 122222222111
Q ss_pred ----------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 045674 475 ----------CGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCL 544 (650)
Q Consensus 475 ----------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 544 (650)
.+...+|...|+.+++. |=.+....+|...+..+.+. =...-..++..|.+
T Consensus 93 ~~~~~~~~~D~~~~~~A~~~~~~li~~---------------yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~~ 153 (203)
T PF13525_consen 93 IPGILRSDRDQTSTRKAIEEFEELIKR---------------YPNSEYAEEAKKRLAELRNR----LAEHELYIARFYYK 153 (203)
T ss_dssp HHHHH-TT---HHHHHHHHHHHHHHHH----------------TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHC
T ss_pred CccchhcccChHHHHHHHHHHHHHHHH---------------CcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 12233444444444443 33344445555444444321 01112346777999
Q ss_pred cCCHHHHHHHHHHHhhCCCC---cHHHHHHHHHHHHHcCCHHHHHH
Q 045674 545 SGKVARACKILDELAPKGII---PETAFEDMITCLCKTGRIKEACK 587 (650)
Q Consensus 545 ~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~ 587 (650)
.|.+..|..-++.+++..|. ..+++..++.++.+.|..+.|..
T Consensus 154 ~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 154 RGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp TT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred cccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 99999999999999998887 34677888999999998885543
No 196
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.72 E-value=0.00013 Score=51.83 Aligned_cols=63 Identities=14% Similarity=0.130 Sum_probs=40.1
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHH
Q 045674 508 FKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFED 571 (650)
Q Consensus 508 ~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 571 (650)
...|++++|+++|+++.+..+. +......++.+|.+.|++++|..+++++....+.++..+..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 3456777777777777665444 56666667777777777777777777777666655444433
No 197
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.71 E-value=0.0003 Score=50.82 Aligned_cols=64 Identities=9% Similarity=0.083 Sum_probs=50.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCChhh
Q 045674 573 ITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYDRMGS 637 (650)
Q Consensus 573 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 637 (650)
..++...+++++|.++++++++.+ |.+...|...+.++.+.|++++|.+.++++++.++++...
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence 356778888888888888888876 6677778888888888888888888888888887765443
No 198
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.71 E-value=8e-05 Score=44.48 Aligned_cols=33 Identities=48% Similarity=0.856 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 045674 499 TYTILINGMFKEHRNEEALKLWDMMIDKGITPT 531 (650)
Q Consensus 499 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~ 531 (650)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 466777777777777777777777777666665
No 199
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.70 E-value=6.8e-05 Score=44.45 Aligned_cols=32 Identities=31% Similarity=0.687 Sum_probs=17.3
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC
Q 045674 254 TYNTMIKGYCKVGKTQKAMEKFRAMEARNVQP 285 (650)
Q Consensus 254 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 285 (650)
+|+.++.+|++.|+++.|.++|+.|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555443
No 200
>PRK11906 transcriptional regulator; Provisional
Probab=97.70 E-value=0.004 Score=60.50 Aligned_cols=113 Identities=14% Similarity=0.097 Sum_probs=71.5
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 045674 512 RNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADG 591 (650)
Q Consensus 512 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 591 (650)
...+|.++.+++++.+.. |......++.+....|+++.|..+|+++...+|....+|...+..+.-.|+.++|.+.+++
T Consensus 319 ~~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 319 AAQKALELLDYVSDITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred HHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 345666666667666544 6666666777666667777777777777777777777777777777777777777777777
Q ss_pred HHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 045674 592 IVDREREIP--GKIRTALINALRKAGNADLAIKLMHSK 627 (650)
Q Consensus 592 ~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 627 (650)
+++.. |-. ..+....++.|+.+ ..++|+++|-+-
T Consensus 398 alrLs-P~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 433 (458)
T PRK11906 398 SLQLE-PRRRKAVVIKECVDMYVPN-PLKNNIKLYYKE 433 (458)
T ss_pred HhccC-chhhHHHHHHHHHHHHcCC-chhhhHHHHhhc
Confidence 77654 211 22233334345544 456666665443
No 201
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.69 E-value=0.033 Score=49.38 Aligned_cols=133 Identities=13% Similarity=0.074 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCCHHHHHHH
Q 045674 464 CYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDK-----GITPTAASFRAL 538 (650)
Q Consensus 464 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~p~~~~~~~l 538 (650)
+.+.++.++.-.|.+.-....+++.++...+.++.....|+..-...|+.+.|...|++..+. ++.-+.......
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 456677777778888888889999988877778888888888888999999999999876642 233233333444
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 045674 539 SIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDRE 596 (650)
Q Consensus 539 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 596 (650)
...+.-++++.+|...+.++...++.++...+.-+-++.-.|+..+|++.++.+++..
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 4556667788889999999998888888888888888888999999999999998764
No 202
>PRK11906 transcriptional regulator; Provisional
Probab=97.68 E-value=0.0017 Score=63.07 Aligned_cols=121 Identities=11% Similarity=0.004 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHH-CCCCCC-HHHHHHHHHHHHh---------cCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCC
Q 045674 513 NEEALKLWDMMID-KGITPT-AASFRALSIGLCL---------SGKVARACKILDELAPKGIIPETAFEDMITCLCKTGR 581 (650)
Q Consensus 513 ~~~A~~~~~~~~~-~~~~p~-~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 581 (650)
.+.|+.+|.+++. ..++|+ ...|..+++++.. .....+|.+..+++++.++.|+.+...++.+++-.|+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~ 353 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQ 353 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcc
Confidence 4567777777771 123333 3455555554432 2356788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 045674 582 IKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYDR 634 (650)
Q Consensus 582 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 634 (650)
++.|...|+++...+ |....+|...+..+...|+.++|++.++++++..|..
T Consensus 354 ~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~ 405 (458)
T PRK11906 354 AKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRR 405 (458)
T ss_pred hhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchh
Confidence 999999999999987 7778899999999999999999999999999998874
No 203
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.65 E-value=0.00011 Score=43.48 Aligned_cols=33 Identities=33% Similarity=0.581 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 045674 498 YTYTILINGMFKEHRNEEALKLWDMMIDKGITP 530 (650)
Q Consensus 498 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p 530 (650)
.+|+.++.+|.+.|+++.|.++|++|.+.|+.|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 356666666666666666666666666666655
No 204
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.63 E-value=0.0011 Score=64.81 Aligned_cols=120 Identities=12% Similarity=0.151 Sum_probs=72.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHH
Q 045674 286 DKITYMTLIQACYLEGDFDSCLSLYHEMDEK--GIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTAL 363 (650)
Q Consensus 286 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 363 (650)
+......++..+....+.+.+..++..+... ....-..+..++++.|.+.|..+++..++..=...|+-||..+++.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 4445555555555555666666666666553 22222344456667777777777777777666666777777777777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc
Q 045674 364 IDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKN 405 (650)
Q Consensus 364 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 405 (650)
+..+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 777777777777777666666554444555555555554443
No 205
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.62 E-value=0.026 Score=49.96 Aligned_cols=148 Identities=11% Similarity=0.052 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045674 409 EEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRM 488 (650)
Q Consensus 409 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 488 (650)
+..++.|++-. ..+.++++..+...+.+.-....+.+.++..-+.++.....|+..-.+.|+.+.|...|++.
T Consensus 166 ESsv~lW~KRl-------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~v 238 (366)
T KOG2796|consen 166 ESSIRLWRKRL-------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDV 238 (366)
T ss_pred hhHHHHHHHHH-------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 45555554432 23455677777788889999999999999876778999999999999999999999999977
Q ss_pred HHcCCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 045674 489 EDEGCDQTVYTYT-----ILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGI 563 (650)
Q Consensus 489 ~~~~~~~~~~~~~-----~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 563 (650)
.+..-..+..+.+ .....|...+++.+|...+.+....+.. |....+.-+-++...|+..+|++.++.+....|
T Consensus 239 ek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P 317 (366)
T KOG2796|consen 239 EKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQDP 317 (366)
T ss_pred HHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 6643222333333 3334556788999999999988876544 666666666666778999999999999998876
Q ss_pred C
Q 045674 564 I 564 (650)
Q Consensus 564 ~ 564 (650)
.
T Consensus 318 ~ 318 (366)
T KOG2796|consen 318 R 318 (366)
T ss_pred c
Confidence 5
No 206
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.0017 Score=61.39 Aligned_cols=145 Identities=15% Similarity=-0.003 Sum_probs=99.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 045674 466 NVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLS 545 (650)
Q Consensus 466 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 545 (650)
..-++.|.+.|++..|..-|+++... +. |.+.-+.++...... .-..++..++-++.+.
T Consensus 212 ke~Gn~~fK~gk~~~A~~~Yerav~~-l~------------~~~~~~~ee~~~~~~--------~k~~~~lNlA~c~lKl 270 (397)
T KOG0543|consen 212 KERGNVLFKEGKFKLAKKRYERAVSF-LE------------YRRSFDEEEQKKAEA--------LKLACHLNLAACYLKL 270 (397)
T ss_pred HHhhhHHHhhchHHHHHHHHHHHHHH-hh------------ccccCCHHHHHHHHH--------HHHHHhhHHHHHHHhh
Confidence 34566677777777777777766542 00 111111122111110 1223456677788899
Q ss_pred CCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHH
Q 045674 546 GKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNA-DLAIKLM 624 (650)
Q Consensus 546 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~ 624 (650)
+++.+|++.-++++..++.+..++..-+.++...|+++.|+..|+++++.. |.|..+-..++.+-.+..++ +...++|
T Consensus 271 ~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~~k~~~~~~kekk~y 349 (397)
T KOG0543|consen 271 KEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLKQKIREYEEKEKKMY 349 (397)
T ss_pred hhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988899999999999999999999999999999886 66666666676665555554 4447888
Q ss_pred HHHHHCCC
Q 045674 625 HSKIGVGY 632 (650)
Q Consensus 625 ~~~~~~~~ 632 (650)
..|..+-.
T Consensus 350 ~~mF~k~~ 357 (397)
T KOG0543|consen 350 ANMFAKLA 357 (397)
T ss_pred HHHhhccc
Confidence 88887633
No 207
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.59 E-value=0.0016 Score=63.81 Aligned_cols=122 Identities=13% Similarity=0.136 Sum_probs=80.0
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCC--CCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHH
Q 045674 214 EPSLYTYNFLMNGLVNSMFIESSELVFKVMENGK--VGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYM 291 (650)
Q Consensus 214 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 291 (650)
..+......+++.+....+++.+..++-+..... ...-..|..++++.|.+.|..++++++++.=...|+-||..+++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 3355556666666666666777777776665431 11223445577777777777777777777777777777777777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 045674 292 TLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKV 335 (650)
Q Consensus 292 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 335 (650)
.|+..+.+.|++..|.++...|...+...+..++..-+.+|.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 77777777777777777777776665554555554444444443
No 208
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.59 E-value=0.069 Score=50.31 Aligned_cols=307 Identities=18% Similarity=0.138 Sum_probs=165.9
Q ss_pred ChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHH--HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH--HcCCCHHHH
Q 045674 126 RPNVGLRLFTWAARQKKYSHNLECYISLIDCL--ALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSF--GGLGMVEEL 201 (650)
Q Consensus 126 ~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~a 201 (650)
.|..+-++|+...+.. -|..+-..+ .-.|+-..|++.-.+..+. +..|...+..|+.+- .-.|+++.|
T Consensus 68 sP~t~~Ryfr~rKRdr-------gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~A 139 (531)
T COG3898 68 SPYTARRYFRERKRDR-------GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDA 139 (531)
T ss_pred CcHHHHHHHHHHHhhh-------HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHH
Confidence 3556666666554432 345554444 4557777888777665432 123444444444433 346888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHH----HHHHHHhcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCChhHHHHHHHH
Q 045674 202 LWVWRSMKENGIEPSLYTYNF----LMNGLVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRA 277 (650)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~----ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 277 (650)
.+-|+.|.. |..+-.. |.-...+.|..+.|...-+..-..- +--...+...+...|..|+++.|+++++.
T Consensus 140 r~kfeAMl~-----dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~ 213 (531)
T COG3898 140 RKKFEAMLD-----DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDA 213 (531)
T ss_pred HHHHHHHhc-----ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHH
Confidence 888888876 2233222 2222346778888877777766442 22356777888888888888888888876
Q ss_pred HHhCC-CCCCHH--HHHHHHHHHH---hcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 045674 278 MEARN-VQPDKI--TYMTLIQACY---LEGDFDSCLSLYHEMDEKGIEIP-SHAYNLVIGGLCKVGKCIEGHAIFESMIR 350 (650)
Q Consensus 278 ~~~~~-~~~~~~--~~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 350 (650)
-.+.. +.++.. .-..|+.+-. -..+...|...-.+..+. .|+ ...-..-...+.+.|+..++-.+++.+-+
T Consensus 214 ~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK 291 (531)
T COG3898 214 QRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWK 291 (531)
T ss_pred HHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHh
Confidence 65432 233321 1222332211 123444555544444433 222 12233345666777777777777777777
Q ss_pred cCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 045674 351 RGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKY-EGVEP-DEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAM 428 (650)
Q Consensus 351 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 428 (650)
....|++. ++..+.+.|+. ++.-+++..+ ..++| +..+...+..+....|++..|..--+..... .|...
T Consensus 292 ~ePHP~ia----~lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres 363 (531)
T COG3898 292 AEPHPDIA----LLYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRES 363 (531)
T ss_pred cCCChHHH----HHHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--Cchhh
Confidence 64444432 23334445542 2222222221 01122 3445555566666667766666555544443 34555
Q ss_pred HHHHHHHHHHH-cCCHHHHHHHHHHHHHc
Q 045674 429 FYSSLIDGLGK-AGRVDEAEELFEEMVEK 456 (650)
Q Consensus 429 ~~~~l~~~~~~-~~~~~~A~~~~~~~~~~ 456 (650)
.|..|...-.. .||-.++.+.+.+.++.
T Consensus 364 ~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 364 AYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 56656555433 36777777776666654
No 209
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.53 E-value=0.12 Score=51.81 Aligned_cols=186 Identities=13% Similarity=0.062 Sum_probs=100.0
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 045674 392 EVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDA 471 (650)
Q Consensus 392 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 471 (650)
..+|...+..-...|+.+.+.-+|+.+.-. +..-...|-..+......|+.+-|..++....+-.++..+.+-..-...
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 456666676677777777777777665432 1112234444455555557777777776666554333333322222222
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCCHHHHH---HHHHHHHHCCCCC--CHHHHHHHHHH-HHh
Q 045674 472 LAKCGKLDEALALFKRMEDEGCDQTVYTY-TILINGMFKEHRNEEAL---KLWDMMIDKGITP--TAASFRALSIG-LCL 544 (650)
Q Consensus 472 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~A~---~~~~~~~~~~~~p--~~~~~~~l~~~-~~~ 544 (650)
....|+++.|..+++.+...- |+.... ..-+....+.|..+.+. +++.........+ ....+...++. +.-
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i 453 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKI 453 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHH
Confidence 334567888888887777653 333211 11122334566666665 3333332211111 11112222221 233
Q ss_pred cCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcC
Q 045674 545 SGKVARACKILDELAPKGIIPETAFEDMITCLCKTG 580 (650)
Q Consensus 545 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 580 (650)
.++.+.|..++.++.+..+.+...|..++......+
T Consensus 454 ~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 454 REDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred hcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 567788888888888877777777777777666555
No 210
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.46 E-value=0.12 Score=49.90 Aligned_cols=61 Identities=10% Similarity=0.001 Sum_probs=36.1
Q ss_pred cHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 045674 565 PETAFEDMITC--LCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSK 627 (650)
Q Consensus 565 ~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 627 (650)
+.++.+.|+++ +...|++.++.-+-.=..+. .|++.++..++-++....+|++|...++.+
T Consensus 459 e~eian~LaDAEyLysqgey~kc~~ys~WL~~i--aPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 459 EEEIANFLADAEYLYSQGEYHKCYLYSSWLTKI--APSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh--CCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 34444544433 45667777665554444432 466777777776667777777777766654
No 211
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.43 E-value=0.00019 Score=41.42 Aligned_cols=29 Identities=48% Similarity=0.983 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 045674 254 TYNTMIKGYCKVGKTQKAMEKFRAMEARN 282 (650)
Q Consensus 254 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 282 (650)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555443
No 212
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.42 E-value=0.016 Score=57.83 Aligned_cols=37 Identities=35% Similarity=0.572 Sum_probs=21.7
Q ss_pred HHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 045674 343 AIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFER 382 (650)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 382 (650)
.-++++.++|-.|+... ++..++-.|.+.+|-++|.+
T Consensus 621 ~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 621 SELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred HHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 33555666666666542 44555566677777766654
No 213
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.42 E-value=0.0037 Score=48.56 Aligned_cols=90 Identities=16% Similarity=0.102 Sum_probs=39.3
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCCHH
Q 045674 542 LCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPG---KIRTALINALRKAGNAD 618 (650)
Q Consensus 542 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~ 618 (650)
+...|+.+.|++.|.+++..-|..+.+|+.-+.++.-.|+.++|++-++++++..-+... ..|..-+..|...|+.+
T Consensus 53 laE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd 132 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDD 132 (175)
T ss_pred HHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchH
Confidence 334444444444444444444444444444444444444444444444444443211111 11222233344444445
Q ss_pred HHHHHHHHHHHCC
Q 045674 619 LAIKLMHSKIGVG 631 (650)
Q Consensus 619 ~A~~~~~~~~~~~ 631 (650)
.|+.-|+.+-+.|
T Consensus 133 ~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 133 AARADFEAAAQLG 145 (175)
T ss_pred HHHHhHHHHHHhC
Confidence 5544444444443
No 214
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.41 E-value=0.0039 Score=56.03 Aligned_cols=102 Identities=19% Similarity=0.223 Sum_probs=80.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC---cHHHHHHHH
Q 045674 499 TYTILINGMFKEHRNEEALKLWDMMIDKGIT--PTAASFRALSIGLCLSGKVARACKILDELAPKGII---PETAFEDMI 573 (650)
Q Consensus 499 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~ 573 (650)
.|+.-+. +...|++.+|...|...++..+. -....+..|+.++...|++++|..+|..+.+..|+ -++.+..|+
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 4655444 45778899999999998876443 13456678899999999999999999999887665 568899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 045674 574 TCLCKTGRIKEACKLADGIVDREREIPGK 602 (650)
Q Consensus 574 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 602 (650)
.+..+.|+.++|..+|+++.+.- |....
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~Y-P~t~a 250 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRY-PGTDA 250 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHC-CCCHH
Confidence 99999999999999999998873 44433
No 215
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.40 E-value=0.011 Score=54.84 Aligned_cols=227 Identities=11% Similarity=0.076 Sum_probs=117.0
Q ss_pred HHhcCCHHHHHHHHHHHHHCC--CCCCHHhHHHHHHHHHhcCCHHHHHHHHH----HHHHCC-CCCCHHHHHHHHHHHHH
Q 045674 367 YAKLGSMNEAINIFERMKYEG--VEPDEVTYGVIISGLCKNERLEEAMQYFE----FCRANG-VAVNAMFYSSLIDGLGK 439 (650)
Q Consensus 367 ~~~~~~~~~A~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~----~~~~~~-~~~~~~~~~~l~~~~~~ 439 (650)
+....+.++|+..+.+...+- ..---.++..+..+.++.|.+++++..-- ...+.. -..-...|..+..++.+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777777665430 01112356666677777777777665432 111110 00012334445555555
Q ss_pred cCCHHHHHHHHHHHHHc-CCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHhc
Q 045674 440 AGRVDEAEELFEEMVEK-GCPR---DSYCYNVLIDALAKCGKLDEALALFKRMEDEG-----CDQTVYTYTILINGMFKE 510 (650)
Q Consensus 440 ~~~~~~A~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~ 510 (650)
..++.+++.+-..-... |..+ .-.....+..++...+.++++++.|+...+.. .......+..|...|...
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 55555555554444432 1111 11223345556666667777777777665421 112234566666677777
Q ss_pred CCHHHHHHHHHHHHH----CCCCCCHH-----HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--c----HHHHHHHHHH
Q 045674 511 HRNEEALKLWDMMID----KGITPTAA-----SFRALSIGLCLSGKVARACKILDELAPKGII--P----ETAFEDMITC 575 (650)
Q Consensus 511 ~~~~~A~~~~~~~~~----~~~~p~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~----~~~~~~l~~~ 575 (650)
.|+++|.-+..++.+ .++..-.. .+..+.-++...|..-+|.+.-+++.+.... | ......+++.
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 777777766665543 22221111 1223344455666666666666665543221 2 2334456666
Q ss_pred HHHcCCHHHHHHHHHHHH
Q 045674 576 LCKTGRIKEACKLADGIV 593 (650)
Q Consensus 576 ~~~~g~~~~A~~~~~~~~ 593 (650)
|...|+.+.|..-|+.+.
T Consensus 256 yR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHhcccHhHHHHHHHHHH
Confidence 777777777766666665
No 216
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.40 E-value=0.00049 Score=50.42 Aligned_cols=63 Identities=16% Similarity=0.220 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045674 567 TAFEDMITCLCKTGRIKEACKLADGIVDRE--REIP----GKIRTALINALRKAGNADLAIKLMHSKIG 629 (650)
Q Consensus 567 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 629 (650)
.++..++.+|...|++++|++.++++++.. ..++ ..++..++.++...|++++|+++++++++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 345556666666666666666666655330 0111 23455566666666666666666666654
No 217
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.0012 Score=62.39 Aligned_cols=76 Identities=17% Similarity=0.145 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCChhhhhhhhc
Q 045674 567 TAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYDRMGSIKRRVK 643 (650)
Q Consensus 567 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 643 (650)
.++.+++-++.+.+++.+|++..++.++.+ ++|...+..-+.+|...|+++.|+..|+++++..|.+...-..+++
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~ 333 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIK 333 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 356789999999999999999999999998 8899999999999999999999999999999999987555544443
No 218
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.39 E-value=0.0035 Score=47.60 Aligned_cols=78 Identities=24% Similarity=0.381 Sum_probs=48.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHcCC--------CHHHHHHHHHHHHHCCCCCCHHHHHH
Q 045674 152 SLIDCLALCGDVDRVRLVFNELKEKGF-LMTVSAANSLIKSFGGLG--------MVEELLWVWRSMKENGIEPSLYTYNF 222 (650)
Q Consensus 152 ~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~~~~ 222 (650)
..+.-+...+++...-.+|+.+++.|+ .|+..+|+.++.+..+.. +.-+++.+|+.|...+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 344445555777777777777777776 667777777776665442 23345566666666666666666666
Q ss_pred HHHHHHh
Q 045674 223 LMNGLVN 229 (650)
Q Consensus 223 ll~~~~~ 229 (650)
++..+.+
T Consensus 110 vl~~Llk 116 (120)
T PF08579_consen 110 VLGSLLK 116 (120)
T ss_pred HHHHHHH
Confidence 6665543
No 219
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.38 E-value=0.015 Score=46.92 Aligned_cols=100 Identities=15% Similarity=0.039 Sum_probs=56.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHHHHHH
Q 045674 534 SFRALSIGLCLSGKVARACKILDELAPKGII---PETAFEDMITCLCKTGRIKEACKLADGIVDREREIP---GKIRTAL 607 (650)
Q Consensus 534 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l 607 (650)
.+..-+....+.|++++|.+.|+.+....|. ...+-..++.++.+.|++++|+..+++.++++ |.+ ..++...
T Consensus 12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh-P~hp~vdYa~Y~~ 90 (142)
T PF13512_consen 12 ELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH-PTHPNVDYAYYMR 90 (142)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCCCccHHHHHH
Confidence 3334444455666666666666666665444 44555566666666666666666666666654 221 1222223
Q ss_pred HHHHHhcCC---------------HHHHHHHHHHHHHCCCCC
Q 045674 608 INALRKAGN---------------ADLAIKLMHSKIGVGYDR 634 (650)
Q Consensus 608 ~~~~~~~g~---------------~~~A~~~~~~~~~~~~~~ 634 (650)
+-++..... ...|...|+++++.-|..
T Consensus 91 gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S 132 (142)
T PF13512_consen 91 GLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNS 132 (142)
T ss_pred HHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCC
Confidence 333333333 567777777777766553
No 220
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.35 E-value=0.0038 Score=47.47 Aligned_cols=43 Identities=26% Similarity=0.514 Sum_probs=24.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHh
Q 045674 292 TLIQACYLEGDFDSCLSLYHEMDEKGI-EIPSHAYNLVIGGLCK 334 (650)
Q Consensus 292 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 334 (650)
..|..+...+++.....+|+.+++.|+ .|+..+|+.++...++
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~ 73 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAK 73 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Confidence 344444555666666666666666665 5555666655555443
No 221
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.34 E-value=0.11 Score=46.60 Aligned_cols=53 Identities=17% Similarity=0.065 Sum_probs=26.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCC---cHHHHHHHHHHHHHcCCHHHHHHHHH
Q 045674 538 LSIGLCLSGKVARACKILDELAPKGII---PETAFEDMITCLCKTGRIKEACKLAD 590 (650)
Q Consensus 538 l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~ 590 (650)
+++.|.+.|.+..|..-++.+++..+. ..+.+..+..+|...|-.++|.+.-+
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~ 228 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAK 228 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHH
Confidence 344455555555555555555554333 23444445555555555555554433
No 222
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.33 E-value=0.0014 Score=63.42 Aligned_cols=99 Identities=17% Similarity=0.143 Sum_probs=75.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 045674 531 TAASFRALSIGLCLSGKVARACKILDELAPKGIIPET---AFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTAL 607 (650)
Q Consensus 531 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 607 (650)
+...++.++.+|...|++++|+..|+++++.+|.+.+ +|++++.+|...|++++|++.++++++.+ .+ .|..+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~---~f~~i 149 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL---KFSTI 149 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---hHHHH
Confidence 5678899999999999999999999999999998764 59999999999999999999999999863 22 12211
Q ss_pred HH--HHHhcCCHHHHHHHHHHHHHCCCC
Q 045674 608 IN--ALRKAGNADLAIKLMHSKIGVGYD 633 (650)
Q Consensus 608 ~~--~~~~~g~~~~A~~~~~~~~~~~~~ 633 (650)
.. .+....+.++..++++.+.+-|..
T Consensus 150 ~~DpdL~plR~~pef~eLlee~rk~G~~ 177 (453)
T PLN03098 150 LNDPDLAPFRASPEFKELQEEARKGGED 177 (453)
T ss_pred HhCcchhhhcccHHHHHHHHHHHHhCCc
Confidence 11 111223445677777777777664
No 223
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.31 E-value=0.0031 Score=61.18 Aligned_cols=67 Identities=15% Similarity=0.158 Sum_probs=57.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 045674 495 QTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTA--ASFRALSIGLCLSGKVARACKILDELAPK 561 (650)
Q Consensus 495 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 561 (650)
.+...++.++.+|...|++++|+..|++.++.++.... .+|..++.+|...|+.++|+..++++++.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 36788999999999999999999999999986544221 35889999999999999999999999986
No 224
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.23 E-value=0.0005 Score=39.56 Aligned_cols=29 Identities=45% Similarity=0.673 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 045674 499 TYTILINGMFKEHRNEEALKLWDMMIDKG 527 (650)
Q Consensus 499 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 527 (650)
+|+.++.+|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555443
No 225
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.23 E-value=0.089 Score=50.67 Aligned_cols=30 Identities=10% Similarity=0.126 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 045674 567 TAFEDMITCLCKTGRIKEACKLADGIVDRE 596 (650)
Q Consensus 567 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 596 (650)
-.+..++.+..-.|++++|.+.++++.+..
T Consensus 306 Wd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 306 WDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 344567777778888888888888888653
No 226
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.22 E-value=0.0022 Score=46.96 Aligned_cols=62 Identities=15% Similarity=0.204 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 045674 533 ASFRALSIGLCLSGKVARACKILDELAPK----GII---PETAFEDMITCLCKTGRIKEACKLADGIVD 594 (650)
Q Consensus 533 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 594 (650)
.++..++.+|...|++++|+.+++++++. |.. -..++..++.++...|++++|+++++++++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 35566666777777777777777766632 222 134566777777777777777777777664
No 227
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.22 E-value=0.084 Score=50.83 Aligned_cols=30 Identities=20% Similarity=0.175 Sum_probs=25.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 045674 604 RTALINALRKAGNADLAIKLMHSKIGVGYD 633 (650)
Q Consensus 604 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 633 (650)
+..++.++.-.|++++|.+.++++.+..+.
T Consensus 308 ~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 308 VATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 356888888999999999999999987543
No 228
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.22 E-value=0.014 Score=48.91 Aligned_cols=71 Identities=17% Similarity=0.246 Sum_probs=35.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCChhhhhh
Q 045674 569 FEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIG-----VGYDRMGSIKR 640 (650)
Q Consensus 569 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~ 640 (650)
...++..+...|++++|.+++++++..+ |-+...|..++.+|...|+..+|++.|+++.. .|..|+..+..
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 3445555555666666666666666554 44555566666666666666666666555432 35555544443
No 229
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.22 E-value=0.055 Score=54.28 Aligned_cols=53 Identities=23% Similarity=0.190 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 045674 429 FYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMED 490 (650)
Q Consensus 429 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 490 (650)
+...+..-+.+...+.-|-++|..|-.. ..+++.....++|++|..+-++..+
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc
Confidence 3333333344445555566666554332 2345555566666666666655444
No 230
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.17 E-value=0.011 Score=49.58 Aligned_cols=110 Identities=20% Similarity=0.248 Sum_probs=77.7
Q ss_pred HHHHHHHHH---HHHhcCCHHHHHHHHHHHHHC--CC-CCCH------------------HHHHHHHHHHHhcCCHHHHH
Q 045674 497 VYTYTILIN---GMFKEHRNEEALKLWDMMIDK--GI-TPTA------------------ASFRALSIGLCLSGKVARAC 552 (650)
Q Consensus 497 ~~~~~~l~~---~~~~~~~~~~A~~~~~~~~~~--~~-~p~~------------------~~~~~l~~~~~~~g~~~~A~ 552 (650)
...|..++. .....++.+.+...++++... |. -++. .++..++..+...|++++|.
T Consensus 3 ~~~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~ 82 (146)
T PF03704_consen 3 VDRFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEAL 82 (146)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHH
Confidence 444555533 345678999999999999864 32 2221 12244556677899999999
Q ss_pred HHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCHHHHHH
Q 045674 553 KILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVD-----REREIPGKIRTA 606 (650)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~ 606 (650)
.+++.++..+|.+...+..++.+|...|+..+|.++|+++.+ .|+.|++.+-..
T Consensus 83 ~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l 141 (146)
T PF03704_consen 83 RLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRAL 141 (146)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHHH
Confidence 999999999999999999999999999999999999998753 477787776543
No 231
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.14 E-value=0.18 Score=45.23 Aligned_cols=63 Identities=17% Similarity=0.144 Sum_probs=48.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 045674 570 EDMITCLCKTGRIKEACKLADGIVDREREIP---GKIRTALINALRKAGNADLAIKLMHSKIGVGYDR 634 (650)
Q Consensus 570 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 634 (650)
..++..|.+.|.+-.|..-++.+++. .+.. ...+..+..+|.+.|-.++|.+.-+ +++.++..
T Consensus 171 m~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~-vl~~N~p~ 236 (254)
T COG4105 171 MAIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAK-VLGANYPD 236 (254)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHH-HHHhcCCC
Confidence 34788899999999999999999987 3433 3466678889999999999987654 44444443
No 232
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.12 E-value=0.29 Score=47.28 Aligned_cols=132 Identities=15% Similarity=0.235 Sum_probs=95.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHH
Q 045674 461 DSYCYNVLIDALAKCGKLDEALALFKRMEDEG-CDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAAS-FRAL 538 (650)
Q Consensus 461 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~-~~~l 538 (650)
-..+|..+++...+..-.+.|.++|-++.+.+ ..+++..+++++.-+ ..|+..-|..+|+--... -||... ....
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~--f~d~~~y~~ky 472 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLK--FPDSTLYKEKY 472 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHh--CCCchHHHHHH
Confidence 34567777777777777888899999888887 457777888888754 468888888888876654 233333 3445
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 045674 539 SIGLCLSGKVARACKILDELAPKGII--PETAFEDMITCLCKTGRIKEACKLADGIVDR 595 (650)
Q Consensus 539 ~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 595 (650)
+..+.+.++-+.|..+|+..++.--. -..+|..++.--..-|+...|..+=+++.+.
T Consensus 473 l~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 473 LLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 55667788888888888877754222 3677888888888888888888777777665
No 233
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.12 E-value=0.0076 Score=50.85 Aligned_cols=93 Identities=17% Similarity=0.106 Sum_probs=56.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHc
Q 045674 504 INGMFKEHRNEEALKLWDMMIDKGITPTA----ASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKT 579 (650)
Q Consensus 504 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 579 (650)
+.-+...|++++|..-|..+++.-+.... ..|..-+.++.+.++++.|++--.++++.+|....++..-+.+|-+.
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM 181 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence 44456667777777777777664222111 12333344556666777777777777776666666666666666666
Q ss_pred CCHHHHHHHHHHHHHcC
Q 045674 580 GRIKEACKLADGIVDRE 596 (650)
Q Consensus 580 g~~~~A~~~~~~~~~~~ 596 (650)
.++++|++-|+++++.+
T Consensus 182 ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESD 198 (271)
T ss_pred hhHHHHHHHHHHHHHhC
Confidence 66777777777776654
No 234
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=97.07 E-value=0.078 Score=41.64 Aligned_cols=61 Identities=25% Similarity=0.334 Sum_probs=33.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 045674 572 MITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYD 633 (650)
Q Consensus 572 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 633 (650)
....+...|+-++-.+++..+.+.+ .+++..+..++.+|.+.|+..+|-++++++.++|..
T Consensus 92 ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 92 ALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 3445556666666666666665433 566666666666666666666666666666666653
No 235
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.07 E-value=0.33 Score=47.02 Aligned_cols=452 Identities=16% Similarity=0.156 Sum_probs=217.8
Q ss_pred CCCChhHHHHHHHHHHHcCCCCC---CHHHH-HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHcCC
Q 045674 123 VSKRPNVGLRLFTWAARQKKYSH---NLECY-ISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIK--SFGGLG 196 (650)
Q Consensus 123 ~~~~~~~al~~~~~~~~~~~~~~---~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g 196 (650)
..++..+|.++|..+-......+ ..+++ ..++++|.- ++.+.....+..+.+.. +.. .|..|.. .+.+.|
T Consensus 18 kq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~-~~s--~~l~LF~~L~~Y~~k 93 (549)
T PF07079_consen 18 KQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQF-GKS--AYLPLFKALVAYKQK 93 (549)
T ss_pred HHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhc-CCc--hHHHHHHHHHHHHhh
Confidence 35677777787777654421111 11222 345555543 45666666666665542 222 2333333 345677
Q ss_pred CHHHHHHHHHHHHHC--CCCC------------CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCC----CCCChhhHHHH
Q 045674 197 MVEELLWVWRSMKEN--GIEP------------SLYTYNFLMNGLVNSMFIESSELVFKVMENGK----VGPDVVTYNTM 258 (650)
Q Consensus 197 ~~~~a~~~~~~~~~~--~~~~------------~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~l 258 (650)
.+++|++.+...... +..+ |-..-+..+.++...|++.+++.+++++...- ..-+..+|+.+
T Consensus 94 ~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~ 173 (549)
T PF07079_consen 94 EYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRA 173 (549)
T ss_pred hHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHH
Confidence 888888777766554 2111 11122445566777788888877777765432 23566777765
Q ss_pred HHHHHHcCChhHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 045674 259 IKGYCKVGKTQKAMEKFRAMEAR---NVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKV 335 (650)
Q Consensus 259 ~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 335 (650)
+-.+.+ .+|-++.+. ++-|+ |.-++..|.+.= ..++...-..+.|.......++....-.
T Consensus 174 vlmlsr--------SYfLEl~e~~s~dl~pd---yYemilfY~kki------~~~d~~~Y~k~~peeeL~s~imqhlfi~ 236 (549)
T PF07079_consen 174 VLMLSR--------SYFLELKESMSSDLYPD---YYEMILFYLKKI------HAFDQRPYEKFIPEEELFSTIMQHLFIV 236 (549)
T ss_pred HHHHhH--------HHHHHHHHhcccccChH---HHHHHHHHHHHH------HHHhhchHHhhCcHHHHHHHHHHHHHhC
Confidence 544433 222222221 11221 222222222110 0000000001122222222222222211
Q ss_pred --CChHHHHHHHHHHHHcCCCcCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----CHHhHHHHHHHHHhcCCH
Q 045674 336 --GKCIEGHAIFESMIRRGCQPNVA-IYTALIDSYAKLGSMNEAINIFERMKYEGVEP----DEVTYGVIISGLCKNERL 408 (650)
Q Consensus 336 --g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~ 408 (650)
....--.++++.....-+.|+-. +...|...+.. +.+++..+-+.+....+.+ =..++..++....+.++.
T Consensus 237 p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T 314 (549)
T PF07079_consen 237 PKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQT 314 (549)
T ss_pred CHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 11122223333333333334322 11222222322 3444444433332221110 134677777778888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHH-----HHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCH-HHHHHHH---HHHHHc
Q 045674 409 EEAMQYFEFCRANGVAVNAMF-----YSSLIDGLGK----AGRVDEAEELFEEMVEKGCPRDS-YCYNVLI---DALAKC 475 (650)
Q Consensus 409 ~~a~~~~~~~~~~~~~~~~~~-----~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~-~~~~~l~---~~~~~~ 475 (650)
..|.+.+..+...++...... -..+-+..+. .-+...=+.+|++....+ .|. .....|+ .-+-+.
T Consensus 315 ~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~D--iDrqQLvh~L~~~Ak~lW~~ 392 (549)
T PF07079_consen 315 EEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYD--IDRQQLVHYLVFGAKHLWEI 392 (549)
T ss_pred HHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhc--ccHHHHHHHHHHHHHHHHhc
Confidence 888888777665543322110 0111222221 112233344455544433 222 1222222 223445
Q ss_pred CC-HHHHHHHHHHHHHcCCCCCHHHHHHHHH----HHH---hcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHH--H
Q 045674 476 GK-LDEALALFKRMEDEGCDQTVYTYTILIN----GMF---KEHRNEEALKLWDMMIDKGITPT----AASFRALSI--G 541 (650)
Q Consensus 476 g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~----~~~---~~~~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~--~ 541 (650)
|. -++|+.+++.+.+-.. -|...-|.... .|. ....+.+-+.+-+-+.+.|+.|- ...-+.+.. .
T Consensus 393 g~~dekalnLLk~il~ft~-yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEy 471 (549)
T PF07079_consen 393 GQCDEKALNLLKLILQFTN-YDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEY 471 (549)
T ss_pred CCccHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHH
Confidence 55 7788888888876422 24433333221 221 12223333333333445677653 334444443 3
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 045674 542 LCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTA 606 (650)
Q Consensus 542 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 606 (650)
+...|++.++.-+-.-+.+..| ++.++..+|-++....++++|..++..+ ||+..++..
T Consensus 472 Lysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~ds 530 (549)
T PF07079_consen 472 LYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDS 530 (549)
T ss_pred HHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHH
Confidence 5678999999887777777666 8899999999999999999999999875 667666654
No 236
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.02 E-value=0.53 Score=48.62 Aligned_cols=362 Identities=14% Similarity=0.151 Sum_probs=177.1
Q ss_pred HcCCCHHHHHHHHHHHH--------HCCCCCCHHHHHH-----HHHHHHhcCChhHHHHHHHHHhcCCCCCChhhHHHHH
Q 045674 193 GGLGMVEELLWVWRSMK--------ENGIEPSLYTYNF-----LMNGLVNSMFIESSELVFKVMENGKVGPDVVTYNTMI 259 (650)
Q Consensus 193 ~~~g~~~~a~~~~~~~~--------~~~~~~~~~~~~~-----ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 259 (650)
.+..++++-..+-+.+. ..|++....-|.. ++.-++..+.+..|.++.+.+...-.. +...|....
T Consensus 400 l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa 478 (829)
T KOG2280|consen 400 LRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWA 478 (829)
T ss_pred cccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHH
Confidence 34445565554444332 3466666665544 456667788899999988887632111 145666667
Q ss_pred HHHHHcCC--hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHH
Q 045674 260 KGYCKVGK--TQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIE----IPSHAYNLVIGGLC 333 (650)
Q Consensus 260 ~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~ 333 (650)
..+.+..+ -+++.+..++=...-. -....|..+.+.....|+++.|..+++.=...+.. .+..-+...+.-..
T Consensus 479 ~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kai 557 (829)
T KOG2280|consen 479 RRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAI 557 (829)
T ss_pred HHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHH
Confidence 66766532 2233333333222212 34567888888888899999998887642222111 01111223333444
Q ss_pred hcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 045674 334 KVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQ 413 (650)
Q Consensus 334 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 413 (650)
+.|+.+-...++-.+...- +... .+.-..+...|..+|.+..+.. |..+. -+ +..+++-.++..
T Consensus 558 es~d~~Li~~Vllhlk~~~---~~s~------l~~~l~~~p~a~~lY~~~~r~~---~~~~l---~d-~y~q~dn~~~~a 621 (829)
T KOG2280|consen 558 ESGDTDLIIQVLLHLKNKL---NRSS------LFMTLRNQPLALSLYRQFMRHQ---DRATL---YD-FYNQDDNHQALA 621 (829)
T ss_pred hcCCchhHHHHHHHHHHHH---HHHH------HHHHHHhchhhhHHHHHHHHhh---chhhh---hh-hhhcccchhhhh
Confidence 5555555555544443320 1111 1112234455666666655421 21111 11 122222222222
Q ss_pred HH--HHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHH----------HHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHH
Q 045674 414 YF--EFCRAN-GVAVNAMFYSSLIDGLGKAGRVDEAE----------ELFEEMVEK-GCPRDSYCYNVLIDALAKCGKLD 479 (650)
Q Consensus 414 ~~--~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~----------~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~ 479 (650)
.| +..... .+..-..........+.+.....-.. .+.+.+... |..-...+.+.-+.-+...|+..
T Consensus 622 ~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k 701 (829)
T KOG2280|consen 622 SFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNK 701 (829)
T ss_pred hhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchH
Confidence 22 110000 01111111223333444333211111 111111111 11122223344445555667777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 045674 480 EALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELA 559 (650)
Q Consensus 480 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 559 (650)
+|.++-.+.. -||...|..-+.+++..+++++-.++-+.... +.-|.-...+|.+.|+.++|.+++-+..
T Consensus 702 ~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe~c~~~~n~~EA~KYiprv~ 771 (829)
T KOG2280|consen 702 RAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVEACLKQGNKDEAKKYIPRVG 771 (829)
T ss_pred HHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHHHHhcccHHHHhhhhhccC
Confidence 7776665543 25777777777777777777776665554331 2223345566777788888877776654
Q ss_pred hCCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 045674 560 PKGIIPETAFEDMITCLCKTGRIKEACKLAD 590 (650)
Q Consensus 560 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 590 (650)
.. ...+.+|.+.|++.+|.+..-
T Consensus 772 ~l--------~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 772 GL--------QEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred Ch--------HHHHHHHHHhccHHHHHHHHH
Confidence 32 145667777777777766543
No 237
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.01 E-value=0.042 Score=51.13 Aligned_cols=229 Identities=12% Similarity=0.093 Sum_probs=146.1
Q ss_pred HHhcCChHHHHHHHHHHHHcC--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC---HHhHHHHHHHHHh
Q 045674 332 LCKVGKCIEGHAIFESMIRRG--CQPNVAIYTALIDSYAKLGSMNEAINIFERMKYE--GVEPD---EVTYGVIISGLCK 404 (650)
Q Consensus 332 ~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~p~---~~~~~~l~~~~~~ 404 (650)
+....+..+|+..+.+.+.+- ......++..+..+.++.|.+++++..--..+.. ...-. ...|..+.+++-+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888777641 1112346667778888889888877643322211 01111 1234445555555
Q ss_pred cCCHHHHHHHHHHHHHC-CCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHHHc
Q 045674 405 NERLEEAMQYFEFCRAN-GVAV---NAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGC-----PRDSYCYNVLIDALAKC 475 (650)
Q Consensus 405 ~g~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~ 475 (650)
..++.+++.+-..-... |..+ .-.....+..++...+.++++++.|+...+... .....++..|...|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 55556666555544332 2222 224455677888888999999999998876321 12345788999999999
Q ss_pred CCHHHHHHHHHHHHH----cCCCCCHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC-HHHHHHHHHH
Q 045674 476 GKLDEALALFKRMED----EGCDQTVY-----TYTILINGMFKEHRNEEALKLWDMMID----KGITPT-AASFRALSIG 541 (650)
Q Consensus 476 g~~~~A~~~~~~~~~----~~~~~~~~-----~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~p~-~~~~~~l~~~ 541 (650)
.++++|..+..+..+ .++..-.. ....|..++-..|+.-.|.+.-++..+ .|-.+. ...+..++..
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 999999988877654 23321111 222344456678888888888887664 343322 2345678888
Q ss_pred HHhcCCHHHHHHHHHHHhh
Q 045674 542 LCLSGKVARACKILDELAP 560 (650)
Q Consensus 542 ~~~~g~~~~A~~~~~~~~~ 560 (650)
|...|+.+.|..-|+.+..
T Consensus 256 yR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHhcccHhHHHHHHHHHHH
Confidence 9999999999999998874
No 238
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.98 E-value=0.29 Score=44.96 Aligned_cols=225 Identities=21% Similarity=0.144 Sum_probs=143.3
Q ss_pred CCHHHHHHHHHHHHHCCCC-CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 045674 371 GSMNEAINIFERMKYEGVE-PDEVTYGVIISGLCKNERLEEAMQYFEFCRAN-GVAVNAMFYSSLIDGLGKAGRVDEAEE 448 (650)
Q Consensus 371 ~~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~ 448 (650)
+....+...+......... .....+......+...+.+..+...+...... ........+......+...++++.+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 4444555555554443211 12345555666667777777777777666542 222244555566666667777777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045674 449 LFEEMVEKGCPRDSYCYNVLID-ALAKCGKLDEALALFKRMEDEGC--DQTVYTYTILINGMFKEHRNEEALKLWDMMID 525 (650)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 525 (650)
.+.........+ ......... .+...|+++.|...+.+...... ......+......+...++.+++...+.++..
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 777777643222 122222233 67778888888888888755322 12333444444446677888888888888887
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 045674 526 KGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDRE 596 (650)
Q Consensus 526 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 596 (650)
.........+..+...+...+++++|...+..+....+.....+..+...+...|.++++...+.+..+..
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 53221356777788888888889999999999888766545566666666667777999999998888764
No 239
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.97 E-value=0.026 Score=48.89 Aligned_cols=71 Identities=20% Similarity=0.312 Sum_probs=44.0
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----------------hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 045674 476 GKLDEALALFKRMEDEGCDQTVYTYTILINGMF----------------KEHRNEEALKLWDMMIDKGITPTAASFRALS 539 (650)
Q Consensus 476 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~----------------~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 539 (650)
|..+=....++.|.+-|+.-|..+|+.|+.++= .-.+.+-|++++++|...|+-||.+++..++
T Consensus 66 GHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll 145 (228)
T PF06239_consen 66 GHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLL 145 (228)
T ss_pred ChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 334434444444444444444445544444332 1234567888999999999999999998888
Q ss_pred HHHHhcC
Q 045674 540 IGLCLSG 546 (650)
Q Consensus 540 ~~~~~~g 546 (650)
..+.+.+
T Consensus 146 ~iFG~~s 152 (228)
T PF06239_consen 146 NIFGRKS 152 (228)
T ss_pred HHhcccc
Confidence 8875544
No 240
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.96 E-value=0.52 Score=47.54 Aligned_cols=383 Identities=11% Similarity=0.020 Sum_probs=213.4
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHC-CCC-CCHHH
Q 045674 143 YSHNLECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFG-GLGMVEELLWVWRSMKEN-GIE-PSLYT 219 (650)
Q Consensus 143 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~-~~~-~~~~~ 219 (650)
+|-..--|...+..=.+.|..+.+.++|++.+. +++.+...|......+. ..|+.+.....|++.... |.. .+...
T Consensus 75 yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~l 153 (577)
T KOG1258|consen 75 YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPL 153 (577)
T ss_pred CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHH
Confidence 444444566666677788888999999998887 46777777777766554 447777888888887765 322 24556
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHH---c------CChhHHHHHHHHHHhC-C---CCCC
Q 045674 220 YNFLMNGLVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCK---V------GKTQKAMEKFRAMEAR-N---VQPD 286 (650)
Q Consensus 220 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~------g~~~~A~~~~~~~~~~-~---~~~~ 286 (650)
|...+..-..++++.....+++++++. ...-++..-..|.+ . ...+++.++-...... . ....
T Consensus 154 Wdkyie~en~qks~k~v~~iyeRilei----P~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~ 229 (577)
T KOG1258|consen 154 WDKYIEFENGQKSWKRVANIYERILEI----PLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEP 229 (577)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHhh----hhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccCh
Confidence 777777777788888888888888853 22333333322222 1 1222222222222110 0 0000
Q ss_pred HHHHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC---C----CcCHH
Q 045674 287 KITYMTLIQACY-LEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRG---C----QPNVA 358 (650)
Q Consensus 287 ~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~----~~~~~ 358 (650)
...+..-+.--. ..+..+++..+..+.. ..--.++-......+.+..|+..+.+- + .++..
T Consensus 230 ~e~~~~~v~~~~~~s~~l~~~~~~l~~~~-----------~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~ 298 (577)
T KOG1258|consen 230 LEELEIGVKDSTDPSKSLTEEKTILKRIV-----------SIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLK 298 (577)
T ss_pred hHHHHHHHhhccCccchhhHHHHHHHHHH-----------HHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHH
Confidence 000000000000 0011111111111111 011112222333344444555554431 1 22456
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 045674 359 IYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLG 438 (650)
Q Consensus 359 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 438 (650)
+|...+..-...|+++.+.-+|++..-- +..-...|-..+.-....|+.+-|..++....+...+-...+-..-....-
T Consensus 299 nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e 377 (577)
T KOG1258|consen 299 NWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEE 377 (577)
T ss_pred HHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHH
Confidence 7888888888999999999999987631 111233455555555566999988888877766654433333333333345
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH---HHHHHHHHcCCCCCHHHHHHHHHHH-----Hhc
Q 045674 439 KAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEAL---ALFKRMEDEGCDQTVYTYTILINGM-----FKE 510 (650)
Q Consensus 439 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~---~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~ 510 (650)
..|+++.|..+++.+.+.- +--...-..-+....+.|+.+.+. .++........ +......+.--+ .-.
T Consensus 378 ~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~--~~~i~~~l~~~~~r~~~~i~ 454 (577)
T KOG1258|consen 378 SNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKE--NNGILEKLYVKFARLRYKIR 454 (577)
T ss_pred hhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccccc--CcchhHHHHHHHHHHHHHHh
Confidence 5789999999999998874 333334444556677788888887 34433333211 222333333222 246
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 045674 511 HRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSG 546 (650)
Q Consensus 511 ~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 546 (650)
++.+.|..++.++.+. ..++...|..++......+
T Consensus 455 ~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 455 EDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred cCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 8899999999999886 3446666666666555443
No 241
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.95 E-value=0.0025 Score=40.23 Aligned_cols=39 Identities=18% Similarity=0.149 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 045674 568 AFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTAL 607 (650)
Q Consensus 568 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 607 (650)
++..++.+|...|++++|+++|+++++.. |.|..+|..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHHHh
Confidence 34445555555555555555555555543 4444444443
No 242
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.16 Score=46.43 Aligned_cols=52 Identities=23% Similarity=0.364 Sum_probs=26.2
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 045674 437 LGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRME 489 (650)
Q Consensus 437 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 489 (650)
....|++.+|...|+...... +.+......++.+|...|+.+.|..++..+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred hhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 344455555555555555442 3334444455555555555555555555443
No 243
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.93 E-value=0.017 Score=49.97 Aligned_cols=104 Identities=18% Similarity=0.223 Sum_probs=68.3
Q ss_pred CCHHhHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 045674 390 PDEVTYGVIISGLCK-----NERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYC 464 (650)
Q Consensus 390 p~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 464 (650)
.+..+|..+++.|.+ .|.++-....+..|.+.|+.-|..+|+.|++.+=+ |.+- -..+|+.+-
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F---------- 112 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEF---------- 112 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHh----------
Confidence 467777777777764 35566666667777777777777777777776654 2221 111111111
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 045674 465 YNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHR 512 (650)
Q Consensus 465 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 512 (650)
.-| -.+-+-|++++++|...|+.||..++..++..+.+.+.
T Consensus 113 -----~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 113 -----MHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred -----ccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 111 12446689999999999999999999999999855443
No 244
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.92 E-value=0.082 Score=53.87 Aligned_cols=160 Identities=14% Similarity=0.125 Sum_probs=98.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCCHHH-HH
Q 045674 468 LIDALAKCGKLDEALALFKRMEDEGCDQTVY------TYTILINGMF----KEHRNEEALKLWDMMIDKGITPTAAS-FR 536 (650)
Q Consensus 468 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~l~~~~~----~~~~~~~A~~~~~~~~~~~~~p~~~~-~~ 536 (650)
++....-.|+-+.+++.+.+..+.+---.+. .|...+..++ .....+.|.++++.+.+. -|+... ..
T Consensus 194 ll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl~ 271 (468)
T PF10300_consen 194 LLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFLF 271 (468)
T ss_pred HHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHHH
Confidence 3344444566666666666554421111111 1222222222 245667888888888875 344443 34
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHH
Q 045674 537 ALSIGLCLSGKVARACKILDELAPKGII----PETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTA-LINAL 611 (650)
Q Consensus 537 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~ 611 (650)
.-++.+...|+.++|++.|+++...... ..-.+..++.++.-.++|++|.+.|.++.+.+ .-+..+|.. .+-++
T Consensus 272 ~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c~ 350 (468)
T PF10300_consen 272 FEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAACL 350 (468)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHH
Confidence 4566777888899999988877642221 44556778888888999999999999988765 334444433 34445
Q ss_pred HhcCCH-------HHHHHHHHHHHHC
Q 045674 612 RKAGNA-------DLAIKLMHSKIGV 630 (650)
Q Consensus 612 ~~~g~~-------~~A~~~~~~~~~~ 630 (650)
...|+. ++|.+++.++...
T Consensus 351 ~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 351 LMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HhhccchhhhhhHHHHHHHHHHHHHH
Confidence 677877 8888888876653
No 245
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.92 E-value=0.17 Score=46.81 Aligned_cols=162 Identities=12% Similarity=0.012 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH----HHHHHH
Q 045674 148 ECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSL----YTYNFL 223 (650)
Q Consensus 148 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l 223 (650)
+-.+.-+..+...|++.+|...++++++. +|.|...+...=.++...|+.+.-...++++... ..++. ..-..+
T Consensus 104 Ek~h~~aai~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~Gmy 181 (491)
T KOG2610|consen 104 EKRHAKAAILWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMY 181 (491)
T ss_pred HhhhhhHHHhhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHH
Confidence 33344455667788888888888888875 4777777888888888888888888888888765 12233 222333
Q ss_pred HHHHHhcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhc
Q 045674 224 MNGLVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPD---KITYMTLIQACYLE 300 (650)
Q Consensus 224 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 300 (650)
.-++...|-+++|++.-++..+.+ +.|..+..++.+.+-..|+..++.+++.+-...=-... ..-|-.....+...
T Consensus 182 aFgL~E~g~y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~ 260 (491)
T KOG2610|consen 182 AFGLEECGIYDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEG 260 (491)
T ss_pred HhhHHHhccchhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcc
Confidence 345567888888888888887765 55677777788888888888888887765432100000 01111122233445
Q ss_pred CCHHHHHHHHHH
Q 045674 301 GDFDSCLSLYHE 312 (650)
Q Consensus 301 ~~~~~a~~~~~~ 312 (650)
+.++.|+++|+.
T Consensus 261 aeye~aleIyD~ 272 (491)
T KOG2610|consen 261 AEYEKALEIYDR 272 (491)
T ss_pred cchhHHHHHHHH
Confidence 666677766654
No 246
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.90 E-value=0.67 Score=47.93 Aligned_cols=341 Identities=14% Similarity=0.113 Sum_probs=176.2
Q ss_pred CCCCCCHHHHHH-----HHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHhcCC
Q 045674 176 KGFLMTVSAANS-----LIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMF---IESSELVFKVMENGK 247 (650)
Q Consensus 176 ~~~~~~~~~~~~-----l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---~~~A~~~~~~~~~~~ 247 (650)
-|++.+..-|.. ++..+...+.+..|+++-.-+...... +...|......+++..+ -+.+..+-+++...
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~- 503 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK- 503 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhccc-
Confidence 355655555543 556667778888888887776543222 24556666666655532 22233333333321
Q ss_pred CCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 045674 248 VGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQ----PDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSH 323 (650)
Q Consensus 248 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 323 (650)
. .....|..+.+-....|+.+-|..+++.=...+.. .+..-+...+.-+.+.|+.+....++-.+...- +..
T Consensus 504 ~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s 579 (829)
T KOG2280|consen 504 L-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRS 579 (829)
T ss_pred C-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHH
Confidence 1 34556777777777889999888877642221100 000111222233334444444444433333220 000
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH--HHH----HCCCCCCHHhHHH
Q 045674 324 AYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFE--RMK----YEGVEPDEVTYGV 397 (650)
Q Consensus 324 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~--~~~----~~~~~p~~~~~~~ 397 (650)
. ......+.-.|..++.+..+.. +.. .+-..|. .++-.+++..|. ... ..+..|+ ...
T Consensus 580 ~------l~~~l~~~p~a~~lY~~~~r~~---~~~---~l~d~y~-q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~ 643 (829)
T KOG2280|consen 580 S------LFMTLRNQPLALSLYRQFMRHQ---DRA---TLYDFYN-QDDNHQALASFHLQASYAAETIEGRIPA---LKT 643 (829)
T ss_pred H------HHHHHHhchhhhHHHHHHHHhh---chh---hhhhhhh-cccchhhhhhhhhhhhhhhhhhcccchh---HHH
Confidence 0 1111123344455555554431 111 1112222 222222222221 100 1122333 223
Q ss_pred HHHHHHhcCCHH---HH-------HHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 045674 398 IISGLCKNERLE---EA-------MQYFEFCRAN-GVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYN 466 (650)
Q Consensus 398 l~~~~~~~g~~~---~a-------~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 466 (650)
....+.+..... +| +.+.+.+... +......+.+--+.-+...|+..+|.++-.+.. -||...|.
T Consensus 644 ~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~w 719 (829)
T KOG2280|consen 644 AANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWW 719 (829)
T ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHH
Confidence 333344433211 11 1122222211 222222334444556677899999988876654 47888898
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 045674 467 VLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSG 546 (650)
Q Consensus 467 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 546 (650)
.-+.++...+++++-+++-+... .+.-|.-+..+|.+.|+.+||.+++-+.-. .. ....+|.+.|
T Consensus 720 Lk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~-----l~----ekv~ay~~~~ 784 (829)
T KOG2280|consen 720 LKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGG-----LQ----EKVKAYLRVG 784 (829)
T ss_pred HHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCC-----hH----HHHHHHHHhc
Confidence 89999999999998777665543 233466677889999999999998876432 11 4567788999
Q ss_pred CHHHHHHHHHH
Q 045674 547 KVARACKILDE 557 (650)
Q Consensus 547 ~~~~A~~~~~~ 557 (650)
++.+|.+.--+
T Consensus 785 ~~~eAad~A~~ 795 (829)
T KOG2280|consen 785 DVKEAADLAAE 795 (829)
T ss_pred cHHHHHHHHHH
Confidence 99998875433
No 247
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.15 Score=46.61 Aligned_cols=51 Identities=22% Similarity=0.227 Sum_probs=25.3
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045674 402 LCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEM 453 (650)
Q Consensus 402 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 453 (650)
....|++.+|...|+........ +...-..++.+|...|+.+.|..++..+
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~l 194 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAAL 194 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhC
Confidence 34455555555555555544333 2333344555555555555555555444
No 248
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.85 E-value=0.11 Score=50.90 Aligned_cols=102 Identities=17% Similarity=0.115 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHH
Q 045674 532 AASFRALSIGLCLSGKVARACKILDELAPKGII--PETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGK-IRTALI 608 (650)
Q Consensus 532 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~ 608 (650)
..+-..++.++.+.|+.++|++.+.++.+..+. ...+...|+.++...+.+.++..++.+.-+...+.+.. .|...+
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 333455677777888888888888888765554 44577788888888888888888888765433233322 222222
Q ss_pred HHHHhcCC---------------HHHHHHHHHHHHHCCCC
Q 045674 609 NALRKAGN---------------ADLAIKLMHSKIGVGYD 633 (650)
Q Consensus 609 ~~~~~~g~---------------~~~A~~~~~~~~~~~~~ 633 (650)
-..+..|+ -..|.+.++++.+.++.
T Consensus 339 LkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPH 378 (539)
T PF04184_consen 339 LKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPH 378 (539)
T ss_pred HHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCC
Confidence 12222222 13366778888887665
No 249
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.85 E-value=0.097 Score=44.51 Aligned_cols=118 Identities=10% Similarity=0.018 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHhhCCCC---cHHHHHHHHHHHHHcCCHHHHHHHH
Q 045674 515 EALKLWDMMIDKGITPTAASF--RALSIGLCLSGKVARACKILDELAPKGII---PETAFEDMITCLCKTGRIKEACKLA 589 (650)
Q Consensus 515 ~A~~~~~~~~~~~~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~ 589 (650)
+.....+++...........+ ..++..+...|++++|...++..+....+ ...+-..|+.+....|.+++|...+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L 149 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL 149 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 444455555544323222222 33456678889999999988888765333 2234456788888999999999988
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 045674 590 DGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYDR 634 (650)
Q Consensus 590 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 634 (650)
+...+.+ -.+.....-++++...|+.++|+..|+++++.+..|
T Consensus 150 ~t~~~~~--w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 150 DTIKEES--WAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred hcccccc--HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 8765432 133344566888889999999999999999887443
No 250
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=96.84 E-value=0.0043 Score=56.83 Aligned_cols=90 Identities=16% Similarity=0.091 Sum_probs=41.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHH
Q 045674 505 NGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKE 584 (650)
Q Consensus 505 ~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 584 (650)
..|.+.|.+++|+.+|.+.+...+. +..++..-+.+|.+..++..|..-.+.++..+-.-..+|..-+.+-...|+..+
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~P~-NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVYPH-NPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNME 183 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccCCC-CccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHH
Confidence 3444555555555555544443111 444444444445555555544444444444322233344444444444445555
Q ss_pred HHHHHHHHHHc
Q 045674 585 ACKLADGIVDR 595 (650)
Q Consensus 585 A~~~~~~~~~~ 595 (650)
|.+-++.++++
T Consensus 184 AKkD~E~vL~L 194 (536)
T KOG4648|consen 184 AKKDCETVLAL 194 (536)
T ss_pred HHHhHHHHHhh
Confidence 55555554444
No 251
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.81 E-value=0.0032 Score=39.74 Aligned_cols=42 Identities=17% Similarity=0.127 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHH
Q 045674 533 ASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMIT 574 (650)
Q Consensus 533 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 574 (650)
.++..++..|...|++++|.++|+++++..|++..++..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 356678888888888888888888888888888888877764
No 252
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.81 E-value=0.87 Score=47.81 Aligned_cols=175 Identities=11% Similarity=0.072 Sum_probs=92.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH----HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 045674 151 ISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSA----ANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNG 226 (650)
Q Consensus 151 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 226 (650)
..-+.++.+...++.|..+-..-- .+... ....+.-+.+.|++++|...|-+.+.. ++|. .++.-
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~~~-----~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~k 406 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKSQH-----LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKK 406 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHH
Confidence 345556666666666665543321 12222 233334445667777777777665543 2332 23334
Q ss_pred HHhcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 045674 227 LVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSC 306 (650)
Q Consensus 227 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 306 (650)
+.....+..-...++.+.+.|+. +...-..|+.+|.+.++.++-.++.+... .|.. ..-....+..+.+.+-.++|
T Consensus 407 fLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a 482 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEA 482 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHH
Confidence 44555555556666666666643 44455567777777777777666665543 2211 11233445555566666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 045674 307 LSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESM 348 (650)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 348 (650)
..+-..... .......+ +-..+++++|.+++..+
T Consensus 483 ~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 483 ELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 555444322 22222222 33456777777776654
No 253
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.79 E-value=0.031 Score=43.63 Aligned_cols=90 Identities=14% Similarity=0.037 Sum_probs=69.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CC---cHHHHHHHHHHHHHcCC
Q 045674 506 GMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKG-II---PETAFEDMITCLCKTGR 581 (650)
Q Consensus 506 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~---~~~~~~~l~~~~~~~g~ 581 (650)
++...|+.++|++.|.+.+..-++ ....|+.-++++.-+|+.++|++-++++++.. +. -...|..-+..|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 456788888888888888876444 67778888888888888888888888888653 32 23456666777888888
Q ss_pred HHHHHHHHHHHHHcC
Q 045674 582 IKEACKLADGIVDRE 596 (650)
Q Consensus 582 ~~~A~~~~~~~~~~~ 596 (650)
-+.|..-|+.+.+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 888888888888776
No 254
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.76 E-value=0.12 Score=47.71 Aligned_cols=154 Identities=13% Similarity=0.099 Sum_probs=92.2
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHH--HHHHHHHhcCCHH
Q 045674 438 GKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDE-GCDQTVYTYT--ILINGMFKEHRNE 514 (650)
Q Consensus 438 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~--~l~~~~~~~~~~~ 514 (650)
...|++.+|...++++++. +|.|...+..-=.++...|+.+.-...+++++.. +......+|. .+..++...|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 3456666666667777665 4667666666666777777777777777777654 2111112222 2233344677777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC----cHHHHHHHHHHHHHcCCHHHHHHHHH
Q 045674 515 EALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGII----PETAFEDMITCLCKTGRIKEACKLAD 590 (650)
Q Consensus 515 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~ 590 (650)
+|.+.-++..+.+.. |.........++-..|++.++.++..+-...--. -..-|-+.+-++...+.++.|+++|+
T Consensus 193 dAEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 777777777765433 5556666666677777777777776655432111 22345555666666677777777776
Q ss_pred HHH
Q 045674 591 GIV 593 (650)
Q Consensus 591 ~~~ 593 (650)
.-+
T Consensus 272 ~ei 274 (491)
T KOG2610|consen 272 REI 274 (491)
T ss_pred HHH
Confidence 543
No 255
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.74 E-value=0.37 Score=42.58 Aligned_cols=204 Identities=14% Similarity=0.121 Sum_probs=110.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 045674 395 YGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAK 474 (650)
Q Consensus 395 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 474 (650)
|.....+|...+++++|...+.+..+. ...+...|. ....+++|.-+.+++.+. +.-...|+--...|..
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASELYVE 103 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHH
Confidence 444445566677777777766655432 111222111 122344444455554442 2223344445556777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCC--CCHHHHHHHHHHHHhcCCHH
Q 045674 475 CGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDK---GIT--PTAASFRALSIGLCLSGKVA 549 (650)
Q Consensus 475 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~--p~~~~~~~l~~~~~~~g~~~ 549 (650)
+|..+.|-..+++.-+. ....++++|+++|++.... +-. --...+....+.+.+..+++
T Consensus 104 ~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~ 167 (308)
T KOG1585|consen 104 CGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFT 167 (308)
T ss_pred hCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhh
Confidence 77777666666655431 3445566666666665431 101 11223445556677777777
Q ss_pred HHHHHHHHHhhC------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhcCCHHHH
Q 045674 550 RACKILDELAPK------GIIPETAFEDMITCLCKTGRIKEACKLADGIVDRE---REIPGKIRTALINALRKAGNADLA 620 (650)
Q Consensus 550 ~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A 620 (650)
+|...+.+-... .+.....+...+-++.-..++..|.+.++...+.+ -+.+..+...|+.+| ..|+.+++
T Consensus 168 Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~ 246 (308)
T KOG1585|consen 168 EAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEI 246 (308)
T ss_pred HHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHH
Confidence 777666554321 11233455666666777778888888888855432 123455666666654 57788877
Q ss_pred HHHHH
Q 045674 621 IKLMH 625 (650)
Q Consensus 621 ~~~~~ 625 (650)
.+++.
T Consensus 247 ~kvl~ 251 (308)
T KOG1585|consen 247 KKVLS 251 (308)
T ss_pred HHHHc
Confidence 76654
No 256
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.72 E-value=1 Score=47.38 Aligned_cols=179 Identities=10% Similarity=0.038 Sum_probs=110.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHH
Q 045674 185 ANSLIKSFGGLGMVEELLWVWRSMKENGIEPS--LYTYNFLMNGLVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGY 262 (650)
Q Consensus 185 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 262 (650)
...-+..+.+...++-|+.+.+.-. .+++ ..........+.+.|++++|...+-+.+.. +.| ..+|.-|
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~---~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kf 407 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQH---LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKF 407 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHh
Confidence 3345566667777777777665432 2222 112233334567889999998877766632 122 2345666
Q ss_pred HHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 045674 263 CKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGH 342 (650)
Q Consensus 263 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 342 (650)
....+..+-..+++.+.+.|.. +...-..|+.+|.+.++.++-.+..+... .|.- ..-....+..+.+.+-.++|.
T Consensus 408 Ldaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~ 483 (933)
T KOG2114|consen 408 LDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAE 483 (933)
T ss_pred cCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHH
Confidence 6677777778888888888765 55566778899999999888777766544 2211 111344556666666667766
Q ss_pred HHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045674 343 AIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMK 384 (650)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 384 (650)
-+-..... +.. .+--.+...+++++|++++..+.
T Consensus 484 ~LA~k~~~-----he~---vl~ille~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 484 LLATKFKK-----HEW---VLDILLEDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHhcc-----CHH---HHHHHHHHhcCHHHHHHHHhcCC
Confidence 55443322 222 23334556788999999888764
No 257
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=96.71 E-value=1.1 Score=47.77 Aligned_cols=187 Identities=11% Similarity=0.113 Sum_probs=106.8
Q ss_pred hHHHHHHHHHHHcCCCCCC--HHHHHHHHHHHH-hcCChhHHHHHHHHHHHCCCCCCHH-----HHHHHHHHHHcCCCHH
Q 045674 128 NVGLRLFTWAARQKKYSHN--LECYISLIDCLA-LCGDVDRVRLVFNELKEKGFLMTVS-----AANSLIKSFGGLGMVE 199 (650)
Q Consensus 128 ~~al~~~~~~~~~~~~~~~--~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~~ 199 (650)
..|++.++.+.+....+|. ..++..++.+|. ...++++|+..+++.....-.++.. ....++..+.+.+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 4556666666655444443 345667888886 7789999999999876542122211 2234556666666555
Q ss_pred HHHHHHHHHHHCCCC----CCHHHHHHH-HHHHHhcCChhHHHHHHHHHhcCC---CCCChhhHHHHHHHHH--HcCChh
Q 045674 200 ELLWVWRSMKENGIE----PSLYTYNFL-MNGLVNSMFIESSELVFKVMENGK---VGPDVVTYNTMIKGYC--KVGKTQ 269 (650)
Q Consensus 200 ~a~~~~~~~~~~~~~----~~~~~~~~l-l~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~--~~g~~~ 269 (650)
|....++.++.--. +-...|..+ +..+...+++..|.+.++.+...- ..+...++..++.+.. +.+..+
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence 88888877654211 122222322 222223378888888888776432 2334445555554444 345567
Q ss_pred HHHHHHHHHHhCC---------CCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHH
Q 045674 270 KAMEKFRAMEARN---------VQPDKITYMTLIQAC--YLEGDFDSCLSLYHEMDE 315 (650)
Q Consensus 270 ~A~~~~~~~~~~~---------~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~ 315 (650)
++.+.++.+.... ..|...+|..+++.+ ...|+++.+...++++..
T Consensus 197 d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~ 253 (608)
T PF10345_consen 197 DVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQ 253 (608)
T ss_pred hHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777777663321 123455666666554 456776676666655543
No 258
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.67 E-value=0.6 Score=44.07 Aligned_cols=103 Identities=12% Similarity=0.098 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHcCCH---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 045674 428 MFYSSLIDGLGKAGRV---DEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILI 504 (650)
Q Consensus 428 ~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 504 (650)
.++..++.+|...+.. ++|..+++.+... ++..+.++..-+..+.+.++.+++.+.+.+|+..- .-....+..++
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l 162 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHH
Confidence 3455666667666553 3455555555443 23345555555666666777777888888777652 11223344444
Q ss_pred HHHH--hcCCHHHHHHHHHHHHHCCCCCCH
Q 045674 505 NGMF--KEHRNEEALKLWDMMIDKGITPTA 532 (650)
Q Consensus 505 ~~~~--~~~~~~~A~~~~~~~~~~~~~p~~ 532 (650)
..+. .......|...+..++...+.|..
T Consensus 163 ~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 163 HHIKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 4331 223345566666666644344443
No 259
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.65 E-value=0.13 Score=42.61 Aligned_cols=122 Identities=19% Similarity=0.151 Sum_probs=52.4
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCH
Q 045674 473 AKCGKLDEALALFKRMEDEGCDQTVY-TYTILINGMFKEHRNEEALKLWDMMIDKGITPTAA---SFRALSIGLCLSGKV 548 (650)
Q Consensus 473 ~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~ 548 (650)
.+.+..++|+.-|..+.+.|...-+. ............|+...|...|+++-.....|-.. .-..-+..+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 44555555665565555544331111 01111222334555555555555555433332221 011112233445555
Q ss_pred HHHHHHHHHHhhCCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 045674 549 ARACKILDELAPKGII-PETAFEDMITCLCKTGRIKEACKLADGIVD 594 (650)
Q Consensus 549 ~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 594 (650)
++...-.+.+...+.. -...-..|+.+-++.|++..|...|..+..
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 5554444444322211 333444455555555555555555555543
No 260
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.54 E-value=0.23 Score=50.72 Aligned_cols=26 Identities=8% Similarity=-0.141 Sum_probs=14.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045674 395 YGVIISGLCKNERLEEAMQYFEFCRA 420 (650)
Q Consensus 395 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 420 (650)
+..++....-.|+-+.+++.+....+
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~ 216 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASK 216 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhc
Confidence 33444444556666666666666544
No 261
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.51 E-value=0.29 Score=38.59 Aligned_cols=136 Identities=18% Similarity=0.163 Sum_probs=74.3
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHhcCCHH
Q 045674 438 GKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVY---TYTILINGMFKEHRNE 514 (650)
Q Consensus 438 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~ 514 (650)
.-.|.+++..++..+.... .+..-+|.++.-....-+-+-..++++.+-+. -|.. ..-..+.+|...|.
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FDis~C~NlKrVi~C~~~~n~-- 84 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKI---FDISKCGNLKRVIECYAKRNK-- 84 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-GGG-S-THHHHHHHHHTT---
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCchhhcchHHHHHHHHHhcc--
Confidence 3457777778877777764 34444555554444444444444555444332 1111 11223333333222
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 045674 515 EALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVD 594 (650)
Q Consensus 515 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 594 (650)
+...+...+..+..+|+-++-.+++..+.+.+-.+++.+..++.+|.+.|+..+|.++++++-+
T Consensus 85 ----------------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 85 ----------------LSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp ------------------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred ----------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 3344455566677788888888888888765555888888888888888888888888888888
Q ss_pred cCC
Q 045674 595 RER 597 (650)
Q Consensus 595 ~~~ 597 (650)
.|.
T Consensus 149 kG~ 151 (161)
T PF09205_consen 149 KGL 151 (161)
T ss_dssp TT-
T ss_pred hch
Confidence 773
No 262
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.48 E-value=0.082 Score=42.83 Aligned_cols=84 Identities=13% Similarity=0.046 Sum_probs=61.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 045674 146 NLECYISLIDCLALCGDVDRVRLVFNELKEKG--FLMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFL 223 (650)
Q Consensus 146 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 223 (650)
+...+..-+....+.|++++|++.|+.+..+- .+....+...|+.+|.+.|++++|+..++++++....--...|...
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 45566667777788899999999999988761 2445667778888999999999999999998887544333455555
Q ss_pred HHHHHh
Q 045674 224 MNGLVN 229 (650)
Q Consensus 224 l~~~~~ 229 (650)
+.+++.
T Consensus 89 ~~gL~~ 94 (142)
T PF13512_consen 89 MRGLSY 94 (142)
T ss_pred HHHHHH
Confidence 555543
No 263
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.42 E-value=1.1 Score=44.24 Aligned_cols=66 Identities=12% Similarity=0.136 Sum_probs=46.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045674 460 RDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQ---TVYTYTILINGMFKEHRNEEALKLWDMMID 525 (650)
Q Consensus 460 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 525 (650)
....+|..++..+.+.|+++.|...+.++...+... .......-+..+...|+..+|+..++..++
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345677888888888899999988888887753211 233344445666778888888888888776
No 264
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.33 E-value=0.0043 Score=36.36 Aligned_cols=30 Identities=13% Similarity=0.166 Sum_probs=14.2
Q ss_pred HHHhhCCCCcHHHHHHHHHHHHHcCCHHHH
Q 045674 556 DELAPKGIIPETAFEDMITCLCKTGRIKEA 585 (650)
Q Consensus 556 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 585 (650)
+++++.+|.+..+|..++.+|...|++++|
T Consensus 3 ~kAie~~P~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 3 KKAIELNPNNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHCcCHHhh
Confidence 344444444444444444444444444444
No 265
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.25 E-value=1.3 Score=43.70 Aligned_cols=55 Identities=16% Similarity=0.270 Sum_probs=34.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045674 363 LIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRAN 421 (650)
Q Consensus 363 l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 421 (650)
.+.+.-+.|+++...++....... .++...+..+. +.+.|+++++...++.+...
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~--~l~~~~~~~~~~~i~~~r~~ 58 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALL--ALRQGDYDEAKKYIEKARQL 58 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHH--HHhCccHHHHHHHHHHHHHH
Confidence 355667788888855555554432 23444555554 33788888888888766543
No 266
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.22 E-value=0.61 Score=46.05 Aligned_cols=57 Identities=23% Similarity=0.285 Sum_probs=27.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 045674 433 LIDGLGKAGRVDEAEELFEEMVEKGCP-RDSYCYNVLIDALAKCGKLDEALALFKRME 489 (650)
Q Consensus 433 l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 489 (650)
+..++.+.|+.++|++.++++.+..-. .+..+...|+.++...+.+.++..++.+..
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 444444555555555555555543201 122344445555555555555555555543
No 267
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.22 E-value=0.72 Score=40.02 Aligned_cols=181 Identities=15% Similarity=0.032 Sum_probs=93.1
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 045674 405 NERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALAL 484 (650)
Q Consensus 405 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 484 (650)
.|-+.-|.--|.+.....++ -..+||.+.--+...|+++.|.+.|+...+.+..-+....| .+-.+.--|++.-|.+-
T Consensus 78 lGL~~LAR~DftQaLai~P~-m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lN-Rgi~~YY~gR~~LAq~d 155 (297)
T COG4785 78 LGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLN-RGIALYYGGRYKLAQDD 155 (297)
T ss_pred hhHHHHHhhhhhhhhhcCCC-cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhc-cceeeeecCchHhhHHH
Confidence 34444444445555554444 45667777777777788888888888777765222222222 22223345777777776
Q ss_pred HHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 045674 485 FKRMEDEGCD-QTVYTYTILINGMFKEHRNEEALKLW-DMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKG 562 (650)
Q Consensus 485 ~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~-~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 562 (650)
+.+.-+.++. |-...|-.+. -..-++.+|..-+ ++.... |..-|...+-.+. .|++.+ ..+++++....
T Consensus 156 ~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~y-LgkiS~-e~l~~~~~a~a 226 (297)
T COG4785 156 LLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFY-LGKISE-ETLMERLKADA 226 (297)
T ss_pred HHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHH-HhhccH-HHHHHHHHhhc
Confidence 6666554332 2222222222 2344555555433 333322 3333333222222 232211 11222222211
Q ss_pred CC-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 045674 563 II-------PETAFEDMITCLCKTGRIKEACKLADGIVDRE 596 (650)
Q Consensus 563 ~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 596 (650)
.. -.++|..++.-+...|+.++|..+|+-++..+
T Consensus 227 ~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 227 TDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 11 23567778888888888888888888877543
No 268
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.21 E-value=1.2 Score=42.60 Aligned_cols=105 Identities=20% Similarity=0.310 Sum_probs=67.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 045674 362 ALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAG 441 (650)
Q Consensus 362 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 441 (650)
..+.-+...|+...|.++-.+.. .||...|-..+.+++..++|++-.++-.. . -++.-|..++.+|.+.|
T Consensus 182 ~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~~~~ 251 (319)
T PF04840_consen 182 DTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACLKYG 251 (319)
T ss_pred HHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHHHCC
Confidence 34555566777777777666554 46777777777788888887766655332 1 13345667777777777
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 045674 442 RVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFK 486 (650)
Q Consensus 442 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 486 (650)
+..+|..+...+ + +..-+..|.+.|++.+|.+.-.
T Consensus 252 ~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 252 NKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred CHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHHH
Confidence 777777766551 1 1445666777777777765543
No 269
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.20 E-value=0.25 Score=42.08 Aligned_cols=91 Identities=12% Similarity=0.039 Sum_probs=41.8
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCC-c----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 045674 542 LCLSGKVARACKILDELAPKGII-P----ETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGN 616 (650)
Q Consensus 542 ~~~~g~~~~A~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 616 (650)
++..|++++|..-|..+++.-|. + ...|..-+.++.+.+.++.|++-..++++.+ +....++..-+.+|-+..+
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKMEK 183 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhhhh
Confidence 34445555555555555444333 1 1233334444455555555555555555444 3333333344444545555
Q ss_pred HHHHHHHHHHHHHCCCC
Q 045674 617 ADLAIKLMHSKIGVGYD 633 (650)
Q Consensus 617 ~~~A~~~~~~~~~~~~~ 633 (650)
+++|++-|+++++..|.
T Consensus 184 ~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 184 YEEALEDYKKILESDPS 200 (271)
T ss_pred HHHHHHHHHHHHHhCcc
Confidence 55555555555554444
No 270
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.19 E-value=0.33 Score=42.01 Aligned_cols=182 Identities=15% Similarity=0.078 Sum_probs=110.1
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 045674 437 LGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEA 516 (650)
Q Consensus 437 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 516 (650)
|-..|-++-|.--|.+.+... |.-+.+||.++--+...|+++.|.+.|+...+.++.-+-...|.-+. +.-.|++.-|
T Consensus 75 YDSlGL~~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LA 152 (297)
T COG4785 75 YDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLA 152 (297)
T ss_pred hhhhhHHHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhh
Confidence 333444555555556655543 55678899999999999999999999999999865544444443333 3457999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHH--hcCCHHHHHHHH-HHHhhCCCCcHHHHHH-HHHHHHHcCCHHHHHHHHHHH
Q 045674 517 LKLWDMMIDKGITPTAASFRALSIGLC--LSGKVARACKIL-DELAPKGIIPETAFED-MITCLCKTGRIKEACKLADGI 592 (650)
Q Consensus 517 ~~~~~~~~~~~~~p~~~~~~~l~~~~~--~~g~~~~A~~~~-~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~ 592 (650)
.+-+...-+.++. |+ |.. +|.|. ..-+..+|..-+ +++... +.+-|.. ++..|. |+..+ ..+++++
T Consensus 153 q~d~~~fYQ~D~~-DP--fR~-LWLYl~E~k~dP~~A~tnL~qR~~~~---d~e~WG~~iV~~yL--gkiS~-e~l~~~~ 222 (297)
T COG4785 153 QDDLLAFYQDDPN-DP--FRS-LWLYLNEQKLDPKQAKTNLKQRAEKS---DKEQWGWNIVEFYL--GKISE-ETLMERL 222 (297)
T ss_pred HHHHHHHHhcCCC-Ch--HHH-HHHHHHHhhCCHHHHHHHHHHHHHhc---cHhhhhHHHHHHHH--hhccH-HHHHHHH
Confidence 8888777765443 32 222 23332 234566666544 444433 3333332 222222 22221 2223333
Q ss_pred HHcCCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 045674 593 VDREREIP-------GKIRTALINALRKAGNADLAIKLMHSKIGVG 631 (650)
Q Consensus 593 ~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 631 (650)
..-. ..+ .++|..++.-+...|+.++|..+|+-++..+
T Consensus 223 ~a~a-~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 223 KADA-TDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred Hhhc-cchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 3221 222 3577788889999999999999999887653
No 271
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.18 E-value=0.0064 Score=35.63 Aligned_cols=33 Identities=15% Similarity=0.130 Sum_probs=29.6
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 045674 589 ADGIVDREREIPGKIRTALINALRKAGNADLAIK 622 (650)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 622 (650)
|+++++.+ |.+..+|..++.+|...|++++|++
T Consensus 2 y~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELN-PNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 67788887 8899999999999999999999973
No 272
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.18 E-value=0.81 Score=40.25 Aligned_cols=124 Identities=10% Similarity=0.025 Sum_probs=54.9
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHC--CCCCCH---HHHHHHHH
Q 045674 472 LAKCGKLDEALALFKRMEDEGCD-----QTVYTYTILINGMFK-EHRNEEALKLWDMMIDK--GITPTA---ASFRALSI 540 (650)
Q Consensus 472 ~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~--~~~p~~---~~~~~l~~ 540 (650)
+.+.++.++|...++..++.-.. .-...+..+...|-. ..++++|+..|+..-+. |-+.+. ..+..++.
T Consensus 83 cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~ 162 (288)
T KOG1586|consen 83 CYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQ 162 (288)
T ss_pred HhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHH
Confidence 34455777777777766553110 001111223333332 24566666666665532 111111 12222333
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCcH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 045674 541 GLCLSGKVARACKILDELAPKGIIPE-------TAFEDMITCLCKTGRIKEACKLADGIVDR 595 (650)
Q Consensus 541 ~~~~~g~~~~A~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 595 (650)
.-...+++.+|+++|+++......+. ..+..-+-|+.-.++.-.+...+++..+.
T Consensus 163 yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~ 224 (288)
T KOG1586|consen 163 YAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQEL 224 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhc
Confidence 33455666666666666655433321 12222333333334444455555555544
No 273
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.01 E-value=0.28 Score=40.63 Aligned_cols=119 Identities=18% Similarity=0.072 Sum_probs=73.4
Q ss_pred HHHHHHHHHH---HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHH
Q 045674 498 YTYTILINGM---FKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMIT 574 (650)
Q Consensus 498 ~~~~~l~~~~---~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 574 (650)
.+.+.|+..+ .+.++.+++..++..+.-..+. ....-..-++.+...|++.+|+.+|+++.+..+..+..-..++.
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~-~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~ 86 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPE-FPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLAL 86 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3445555443 4778999999999988876444 33333445667888999999999999988877666666666777
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 045674 575 CLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAI 621 (650)
Q Consensus 575 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 621 (650)
|+...|+.+- ..+-+++++.+ +|+.+.. ++..+....+...|.
T Consensus 87 CL~~~~D~~W-r~~A~evle~~--~d~~a~~-Lv~~Ll~~~~~~~a~ 129 (160)
T PF09613_consen 87 CLYALGDPSW-RRYADEVLESG--ADPDARA-LVRALLARADLEPAH 129 (160)
T ss_pred HHHHcCChHH-HHHHHHHHhcC--CChHHHH-HHHHHHHhccccchh
Confidence 7777776432 22333444443 3444433 333444444434433
No 274
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.98 E-value=1.5 Score=41.46 Aligned_cols=131 Identities=12% Similarity=0.110 Sum_probs=74.6
Q ss_pred HHHHHhcC-CHHHHHHHHHHHHHC--------CCCCCH-----HhHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCCC
Q 045674 364 IDSYAKLG-SMNEAINIFERMKYE--------GVEPDE-----VTYGVIISGLCKNERL---EEAMQYFEFCRANGVAVN 426 (650)
Q Consensus 364 ~~~~~~~~-~~~~A~~~~~~~~~~--------~~~p~~-----~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~ 426 (650)
+......+ +++.|..++++..+. ...++. .++..++.+|...+.. ++|.++++.+....+. .
T Consensus 42 G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~ 120 (278)
T PF08631_consen 42 GKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGN-K 120 (278)
T ss_pred HHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-C
Confidence 33344445 777776666654322 122332 3566677778777664 4566666666555443 3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHcCCCCCH
Q 045674 427 AMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDAL---AKCGKLDEALALFKRMEDEGCDQTV 497 (650)
Q Consensus 427 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~~~~~~ 497 (650)
..++..-+..+.+.++.+.+.+++.+|+..- .-....+...+..+ .. .....|...+..++...+.|..
T Consensus 121 ~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 121 PEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSILHHIKQLAE-KSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred cHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHHHHHHHHHh-hCcHHHHHHHHHHHHHHhCCCh
Confidence 4555566677777889999999999999862 21233344444433 33 2334566666666554444443
No 275
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.94 E-value=0.81 Score=38.18 Aligned_cols=139 Identities=13% Similarity=0.099 Sum_probs=87.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHH-HHHHH
Q 045674 146 NLECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVS-AANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLY-TYNFL 223 (650)
Q Consensus 146 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l 223 (650)
+.+.|...+. +++.+..++|+.-|..+.+.|...-+. ....+.....+.|+...|+..|.++......|... -...|
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 4445543333 456677788888888888776443222 23344455677788888888888887664444333 11111
Q ss_pred --HHHHHhcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC
Q 045674 224 --MNGLVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQP 285 (650)
Q Consensus 224 --l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 285 (650)
.-.++..|.++......+.+...+-+.-...-..|.-.-.+.|++.+|...|..+......|
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 12356778888888887777655434345556667777778888888888888877643333
No 276
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.90 E-value=2.8 Score=44.06 Aligned_cols=46 Identities=13% Similarity=0.104 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHc
Q 045674 548 VARACKILDELAPKGIIPETAFEDMITCLCKT----GRIKEACKLADGIVDR 595 (650)
Q Consensus 548 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~ 595 (650)
...+...+.++...| +......++++|..- .+++.|...|..+.+.
T Consensus 455 ~~~~~~~~~~a~~~g--~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~ 504 (552)
T KOG1550|consen 455 LERAFSLYSRAAAQG--NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQ 504 (552)
T ss_pred hhHHHHHHHHHHhcc--CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHh
Confidence 334444444444332 344444444444332 2355555555555543
No 277
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.86 E-value=1.8 Score=41.51 Aligned_cols=109 Identities=18% Similarity=0.147 Sum_probs=72.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 045674 394 TYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALA 473 (650)
Q Consensus 394 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 473 (650)
+.+..+.-+...|+...|.++-.+. .+ |+...|...+.+++..++|++-.++... + ..+..|..++..+.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F---kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF---KV-PDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc---CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHH
Confidence 4445555666777777776665443 22 4777888888888888888876654322 1 24466777888888
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 045674 474 KCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDM 522 (650)
Q Consensus 474 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 522 (650)
+.|+..+|..+..++ . + ..-+..|.+.|++.+|.+.-.+
T Consensus 249 ~~~~~~eA~~yI~k~-----~-~----~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI-----P-D----EERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HCCCHHHHHHHHHhC-----C-h----HHHHHHHHHCCCHHHHHHHHHH
Confidence 888888888777662 1 1 3345667788888888766444
No 278
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.80 E-value=0.92 Score=47.60 Aligned_cols=143 Identities=18% Similarity=0.146 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHH-----HHHcCCHHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHHc
Q 045674 408 LEEAMQYFEFCRANGVAVNAMFYSSLIDG-----LGKAGRVDEAEELFEEMVE-------KGCPRDSYCYNVLIDALAKC 475 (650)
Q Consensus 408 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~A~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~ 475 (650)
...+.++++...+.|. ...-..++.+ +....|.+.|+..|+.+.+ ++ ++...+.+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g~---~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH---SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhcc---hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 4567777777766652 2222222222 2344677777777777766 33 233445555555553
Q ss_pred C-----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----
Q 045674 476 G-----KLDEALALFKRMEDEGCDQTVYTYTILINGMFK---EHRNEEALKLWDMMIDKGITPTAASFRALSIGLC---- 543 (650)
Q Consensus 476 g-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~---- 543 (650)
. +.+.|..++.+.-+.|.. +...+ ++..+.. ..+...|.++|..+.+.|.. ..+..++.+|.
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~--lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~g 375 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGNP-DAQYL--LGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLG 375 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCCc-hHHHH--HHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCC
Confidence 2 445566666665555432 33222 2222221 12345666666666555432 22222222221
Q ss_pred hcCCHHHHHHHHHHHhhCC
Q 045674 544 LSGKVARACKILDELAPKG 562 (650)
Q Consensus 544 ~~g~~~~A~~~~~~~~~~~ 562 (650)
...+...|..++.++.+.+
T Consensus 376 v~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 376 VERNLELAFAYYKKAAEKG 394 (552)
T ss_pred cCCCHHHHHHHHHHHHHcc
Confidence 1224555666666665555
No 279
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.76 E-value=0.89 Score=44.56 Aligned_cols=109 Identities=11% Similarity=0.028 Sum_probs=63.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHH---cCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------CCCCCC---
Q 045674 470 DALAKCGKLDEALALFKRMED---EGCDQ-----TVYTYTILINGMFKEHRNEEALKLWDMMID-------KGITPT--- 531 (650)
Q Consensus 470 ~~~~~~g~~~~A~~~~~~~~~---~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~~~~p~--- 531 (650)
+.+.-.|++.+|.+++...-- .|... ....||.|+..+.+.|.+.-+..+|.++++ .|+.|.
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence 345556777777777654421 12111 222346666666677777777777766663 343332
Q ss_pred -------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHH
Q 045674 532 -------AASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCK 578 (650)
Q Consensus 532 -------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 578 (650)
...+...+-.|...|+.-.|.+.|.++......++..|..+++++..
T Consensus 328 tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 328 TLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred ehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 12233445556677777777777777776655577777777777653
No 280
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.76 E-value=3.9 Score=45.13 Aligned_cols=273 Identities=20% Similarity=0.228 Sum_probs=138.3
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 045674 271 AMEKFRAMEARNVQPDKITYMTLIQACYLEG--DFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESM 348 (650)
Q Consensus 271 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 348 (650)
..+.++....+. .|+ .-...++..|.+.+ ..+.++....+...... ...+-.. +..++ -+..+..+|+.+
T Consensus 776 vc~~vr~~l~~~-~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~~~~--~~~ad~a-l~hll---~Lvdvn~lfn~A 847 (1265)
T KOG1920|consen 776 VCDAVRNALERR-APD-KFNLFILTSYVKSNPPEIEEALQKIKELQLAQV--AVSADEA-LKHLL---FLVDVNELFNSA 847 (1265)
T ss_pred HHHHHHHHHhhc-Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHhccc--chhHHHH-HHHHH---hhccHHHHHHhh
Confidence 334444444332 444 34456777888777 67777777766664211 1111111 11111 112233333333
Q ss_pred HHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 045674 349 IRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAM 428 (650)
Q Consensus 349 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 428 (650)
+.. + |.. .+++-+...+.|+.+-+-+++++.+. .++..-|. |+ ...++++.|+..+..+. ..
T Consensus 848 Lgt-Y--Dl~--Lal~VAq~SqkDPkEyLP~L~el~~m--~~~~rkF~--ID--~~L~ry~~AL~hLs~~~-------~~ 909 (1265)
T KOG1920|consen 848 LGT-Y--DLD--LALLVAQKSQKDPKEYLPFLNELKKM--ETLLRKFK--ID--DYLKRYEDALSHLSECG-------ET 909 (1265)
T ss_pred hcc-c--chH--HHHHHHHHhccChHHHHHHHHHHhhc--hhhhhhee--HH--HHHHHHHHHHHHHHHcC-------cc
Confidence 321 0 110 12333444566777777777766632 22211111 11 12356666666665543 11
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 045674 429 FYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMF 508 (650)
Q Consensus 429 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 508 (650)
.|.-.++.--+.+-+++|+.++..-.+. -..+|...+..+...+.+++|.-.|+..-+. ..-+.+|.
T Consensus 910 ~~~e~~n~I~kh~Ly~~aL~ly~~~~e~----~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~ 976 (1265)
T KOG1920|consen 910 YFPECKNYIKKHGLYDEALALYKPDSEK----QKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYK 976 (1265)
T ss_pred ccHHHHHHHHhcccchhhhheeccCHHH----HHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHH
Confidence 2333444445566677776665322221 1234455555566677777777777654321 22355677
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHH
Q 045674 509 KEHRNEEALKLWDMMIDKGITPTAA--SFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEAC 586 (650)
Q Consensus 509 ~~~~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 586 (650)
..|+|.+|+.+..++... -+.. +-..|+.-+...|+.-+|.+++.+.... ... .+..||+...|++|+
T Consensus 977 ~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~~~----av~ll~ka~~~~eAl 1046 (1265)
T KOG1920|consen 977 ECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD---PEE----AVALLCKAKEWEEAL 1046 (1265)
T ss_pred HhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---HHH----HHHHHhhHhHHHHHH
Confidence 788888888877766431 1211 1245566667778888888777776543 222 334456666777777
Q ss_pred HHHHHH
Q 045674 587 KLADGI 592 (650)
Q Consensus 587 ~~~~~~ 592 (650)
++....
T Consensus 1047 rva~~~ 1052 (1265)
T KOG1920|consen 1047 RVASKA 1052 (1265)
T ss_pred HHHHhc
Confidence 766554
No 281
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.66 E-value=0.14 Score=51.39 Aligned_cols=155 Identities=16% Similarity=0.140 Sum_probs=80.2
Q ss_pred CCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHH
Q 045674 123 VSKRPNVGLRLFTWAARQKKYSHNLECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELL 202 (650)
Q Consensus 123 ~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 202 (650)
..++.+.+++...--...+.. +..-.+.++..+-+.|-.+.|+.+...-. .-.....+.|+++.|.
T Consensus 273 ~~~d~~~v~~~i~~~~ll~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~ 338 (443)
T PF04053_consen 273 LRGDFEEVLRMIAASNLLPNI--PKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIAL 338 (443)
T ss_dssp HTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHH
T ss_pred HcCChhhhhhhhhhhhhcccC--ChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHH
Confidence 345666655555422211111 23445667777777777777766543321 1122334566766666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 045674 203 WVWRSMKENGIEPSLYTYNFLMNGLVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARN 282 (650)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 282 (650)
++.++. .+...|..|.....+.|+++-|++.|++.. -|..|+-.|.-.|+.++-.++.+.....|
T Consensus 339 ~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 339 EIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 654432 255667777777777777777777776554 23455556666677766666666666554
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 045674 283 VQPDKITYMTLIQACYLEGDFDSCLSLYHE 312 (650)
Q Consensus 283 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 312 (650)
- ++....++...|+.+++.+++.+
T Consensus 404 ~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 404 D------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp -------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred C------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 1 33444455556677766666654
No 282
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.64 E-value=0.48 Score=47.66 Aligned_cols=27 Identities=15% Similarity=0.231 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 045674 357 VAIYTALIDSYAKLGSMNEAINIFERM 383 (650)
Q Consensus 357 ~~~~~~l~~~~~~~~~~~~A~~~~~~~ 383 (650)
...|..|.....+.|+++-|.+.|.+.
T Consensus 347 ~~~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 347 PEKWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp HHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 334444444444444444444444443
No 283
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.62 E-value=4.7 Score=44.55 Aligned_cols=138 Identities=18% Similarity=0.159 Sum_probs=76.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 045674 467 VLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSG 546 (650)
Q Consensus 467 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 546 (650)
...+.-.++|.+.+|+.++..=.+. -...|.+...-+...+.+++|.-+|+..-+ ....+.+|..+|
T Consensus 913 e~~n~I~kh~Ly~~aL~ly~~~~e~----~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~ 979 (1265)
T KOG1920|consen 913 ECKNYIKKHGLYDEALALYKPDSEK----QKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECG 979 (1265)
T ss_pred HHHHHHHhcccchhhhheeccCHHH----HHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhc
Confidence 3344445566666666655321111 222344444444566777777766665422 112345666778
Q ss_pred CHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 045674 547 KVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMH 625 (650)
Q Consensus 547 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 625 (650)
++.+|+.+..++..-.-.-......|+.-+...+++-+|-++..+.... + . .....|++...|++|+.+..
T Consensus 980 dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~-~----~av~ll~ka~~~~eAlrva~ 1050 (1265)
T KOG1920|consen 980 DWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD---P-E----EAVALLCKAKEWEEALRVAS 1050 (1265)
T ss_pred cHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---H-H----HHHHHHhhHhHHHHHHHHHH
Confidence 8888887776664321112223367888888999999998888887632 1 1 12233455556666655543
No 284
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=95.58 E-value=7.4 Score=46.56 Aligned_cols=322 Identities=12% Similarity=0.107 Sum_probs=156.4
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 045674 257 TMIKGYCKVGKTQKAMEKFRAMEARNV--QPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCK 334 (650)
Q Consensus 257 ~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 334 (650)
++..+-.+++.+..|...++.-..... ......+..+...|...+++|....+...-.. +.. ...-+.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~s-l~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPS-LYQQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----Ccc-HHHHHHHHHh
Confidence 455566677888888888887311100 11123334444478888888887777664111 111 2334445667
Q ss_pred cCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHH-HHHHHHHhcCCHHHHHH
Q 045674 335 VGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYG-VIISGLCKNERLEEAMQ 413 (650)
Q Consensus 335 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~a~~ 413 (650)
.|++..|...|+.+.+.+. +...+++-++......|.+...+...+-.... ..+....++ .-..+-.+.++++....
T Consensus 1462 ~g~~~da~~Cye~~~q~~p-~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKDP-DKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred hccHHHHHHHHHHhhcCCC-ccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 8888888888888887632 23555666666666667777776655554432 122222222 22333356666666655
Q ss_pred HHHHHHHCCCCCCHHHHHH--HHHHHHHcC--CHHHHHHHHHHHHHc--------CCCC-CHHHHHHHHHHHHHcCCHHH
Q 045674 414 YFEFCRANGVAVNAMFYSS--LIDGLGKAG--RVDEAEELFEEMVEK--------GCPR-DSYCYNVLIDALAKCGKLDE 480 (650)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~--l~~~~~~~~--~~~~A~~~~~~~~~~--------~~~~-~~~~~~~l~~~~~~~g~~~~ 480 (650)
.+. .. +..+|.. ++....+.. +.-.-.+..+.+.+. ++.- -...|..++....-.. .+.
T Consensus 1540 ~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~e-l~~ 1611 (2382)
T KOG0890|consen 1540 YLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLE-LEN 1611 (2382)
T ss_pred hhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHH-HHH
Confidence 544 11 1111211 222222211 111111122222111 0000 0112222222221111 111
Q ss_pred HHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-HHHC----CCC-CCHHHHHHHHHHHHhcCCHHHHHH
Q 045674 481 ALALFKRMED-EGCDQTVYTYTILINGMFKEHRNEEALKLWDM-MIDK----GIT-PTAASFRALSIGLCLSGKVARACK 553 (650)
Q Consensus 481 A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-~~~~----~~~-p~~~~~~~l~~~~~~~g~~~~A~~ 553 (650)
-.+.+..... .....+...|..-+..-....+..+-+--+++ +... +.. --..+|...++.....|.++.|..
T Consensus 1612 ~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~n 1691 (2382)
T KOG0890|consen 1612 SIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQN 1691 (2382)
T ss_pred HHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHH
Confidence 1111111100 00011111222221111111111111111111 1121 111 134577788888888999999998
Q ss_pred HHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 045674 554 ILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDRE 596 (650)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 596 (650)
.+-.+.+.. .+.++...+..++..|+...|+.++++.++..
T Consensus 1692 all~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1692 ALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 888887765 67778888889999999999999999988765
No 285
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.35 E-value=1.3 Score=36.59 Aligned_cols=123 Identities=14% Similarity=0.098 Sum_probs=55.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 045674 468 LIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGK 547 (650)
Q Consensus 468 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 547 (650)
++..+...+.......+++.+...+. .+...++.++..|++.+ ..+.++.++. . .+......++..|.+.+.
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~---~---~~~yd~~~~~~~c~~~~l 84 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN---K---SNHYDIEKVGKLCEKAKL 84 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh---c---cccCCHHHHHHHHHHcCc
Confidence 34444444555555555555555443 34445555555555432 2333333331 0 111122234444555555
Q ss_pred HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 045674 548 VARACKILDELAPKGIIPETAFEDMITCLCKT-GRIKEACKLADGIVDREREIPGKIRTALINALR 612 (650)
Q Consensus 548 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 612 (650)
++++.-++.++-. ...+ +..+... ++++.|++++++ ..++..|..++..+.
T Consensus 85 ~~~~~~l~~k~~~----~~~A----l~~~l~~~~d~~~a~~~~~~------~~~~~lw~~~~~~~l 136 (140)
T smart00299 85 YEEAVELYKKDGN----FKDA----IVTLIEHLGNYEKAIEYFVK------QNNPELWAEVLKALL 136 (140)
T ss_pred HHHHHHHHHhhcC----HHHH----HHHHHHcccCHHHHHHHHHh------CCCHHHHHHHHHHHH
Confidence 5555555544421 1111 1122222 566666666554 234555666655544
No 286
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=95.35 E-value=4.9 Score=43.05 Aligned_cols=68 Identities=13% Similarity=-0.038 Sum_probs=42.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCC-CC-------CHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHHCCCCCh
Q 045674 572 MITCLCKTGRIKEACKLADGIVDRER-EI-------PGKIRTALINALRKAGNADLAIKLMH--------SKIGVGYDRM 635 (650)
Q Consensus 572 l~~~~~~~g~~~~A~~~~~~~~~~~~-~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~--------~~~~~~~~~~ 635 (650)
.+...+-.|++..|....+.+.+... .| .+.++...+-.+...|+.+.|...|. .+..++..++
T Consensus 367 ~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~E 446 (608)
T PF10345_consen 367 QIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRE 446 (608)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchH
Confidence 34445677888888888887775421 11 13344445555667789999999997 5555555555
Q ss_pred hhhh
Q 045674 636 GSIK 639 (650)
Q Consensus 636 ~~~~ 639 (650)
..+.
T Consensus 447 l~il 450 (608)
T PF10345_consen 447 LYIL 450 (608)
T ss_pred HHHH
Confidence 4443
No 287
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=95.34 E-value=3.3 Score=41.09 Aligned_cols=179 Identities=15% Similarity=0.066 Sum_probs=98.3
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 045674 391 DEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLID 470 (650)
Q Consensus 391 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 470 (650)
|......++..+.....+.-...+..++...|- +...|..++++|... .-++-..+++++++.+ ..|...-..|+.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e--~kmal~el~q~y~en-~n~~l~~lWer~ve~d-fnDvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE--SKMALLELLQCYKEN-GNEQLYSLWERLVEYD-FNDVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc-chhHHHHHHHHH
Confidence 445566666667666666667777777776542 555666777777766 4466677777777764 344444555555
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHh
Q 045674 471 ALAKCGKLDEALALFKRMEDEGCD-----QTVYTYTILINGMFKEHRNEEALKLWDMMID-KGITPTAASFRALSIGLCL 544 (650)
Q Consensus 471 ~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~~~ 544 (650)
.|.+ ++...+...|.++...-++ .-...|..|... -..+.+..+.+..++.. .|-.--...+..+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 5554 6666777777766554221 011233333321 13455555555555553 2222223333344445555
Q ss_pred cCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Q 045674 545 SGKVARACKILDELAPKGIIPETAFEDMITCL 576 (650)
Q Consensus 545 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 576 (650)
..++.+|++++..+.+++-.+..+...++..+
T Consensus 218 ~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~l 249 (711)
T COG1747 218 NENWTEAIRILKHILEHDEKDVWARKEIIENL 249 (711)
T ss_pred ccCHHHHHHHHHHHhhhcchhhhHHHHHHHHH
Confidence 66666666666666665544544444444443
No 288
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=95.29 E-value=0.19 Score=42.35 Aligned_cols=77 Identities=12% Similarity=0.028 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 045674 548 VARACKILDELAPKGIIPETAFEDMITCLCKTG-----------RIKEACKLADGIVDREREIPGKIRTALINALRKAGN 616 (650)
Q Consensus 548 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 616 (650)
+++|+.-|++++..+|....++.+++.+|...+ .+++|.+.|+++... .|+...|+.-+...
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~----- 123 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMA----- 123 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHH-----
Confidence 455666666677777777777888887776544 266677777777766 47767666555443
Q ss_pred HHHHHHHHHHHHHCCC
Q 045674 617 ADLAIKLMHSKIGVGY 632 (650)
Q Consensus 617 ~~~A~~~~~~~~~~~~ 632 (650)
.+|=++..++.+.+.
T Consensus 124 -~kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 124 -AKAPELHMEIHKQGL 138 (186)
T ss_dssp -HTHHHHHHHHHHSSS
T ss_pred -HhhHHHHHHHHHHHh
Confidence 345556666655543
No 289
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=95.12 E-value=2.8 Score=40.57 Aligned_cols=119 Identities=12% Similarity=0.056 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHH---cCCHHHHHHHHH
Q 045674 514 EEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCK---TGRIKEACKLAD 590 (650)
Q Consensus 514 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~ 590 (650)
+.-+.+++++++.++. +...+..++..+.+..+.++..+-+++++...+.+..+|..++..... .-.+++...+|.
T Consensus 48 E~klsilerAL~~np~-~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 48 ERKLSILERALKHNPD-SERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 3445566666655432 455555556666666666666666666666666666666665554443 223555555555
Q ss_pred HHHHc------CC------CCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 045674 591 GIVDR------ER------EIP-----GKIRTALINALRKAGNADLAIKLMHSKIGVGYD 633 (650)
Q Consensus 591 ~~~~~------~~------~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 633 (650)
++++. +. .++ ..++..+...+.+.|..+.|..+++.+++.++-
T Consensus 127 ~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~ 186 (321)
T PF08424_consen 127 KCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFF 186 (321)
T ss_pred HHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcC
Confidence 55432 10 000 123344555567889999999999999998773
No 290
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=95.10 E-value=3.3 Score=39.59 Aligned_cols=81 Identities=16% Similarity=0.155 Sum_probs=41.3
Q ss_pred HHHHHHHHHhhCCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----------
Q 045674 550 RACKILDELAPKGIIPETAFEDMITCLCK----TGRIKEACKLADGIVDREREIPGKIRTALINALRKAG---------- 615 (650)
Q Consensus 550 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---------- 615 (650)
.|..++.++...+ +......++.+|.. ..+.++|...|+++.+.+. ......+. .+...|
T Consensus 173 ~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~~~ 246 (292)
T COG0790 173 KALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAFLT 246 (292)
T ss_pred hHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhhcc
Confidence 4555555555443 33444444444322 2245566666666655541 33333333 333333
Q ss_pred -----CHHHHHHHHHHHHHCCCCChh
Q 045674 616 -----NADLAIKLMHSKIGVGYDRMG 636 (650)
Q Consensus 616 -----~~~~A~~~~~~~~~~~~~~~~ 636 (650)
+...|...+....+.|.....
T Consensus 247 ~~~~~~~~~a~~~~~~~~~~~~~~~~ 272 (292)
T COG0790 247 AAKEEDKKQALEWLQKACELGFDNAC 272 (292)
T ss_pred cccCCCHHHHHHHHHHHHHcCChhHH
Confidence 667777777777777666433
No 291
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.06 E-value=0.42 Score=38.40 Aligned_cols=48 Identities=21% Similarity=0.327 Sum_probs=29.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--cHHHHHHHHHH
Q 045674 528 ITPTAASFRALSIGLCLSGKVARACKILDELAPKGII--PETAFEDMITC 575 (650)
Q Consensus 528 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~ 575 (650)
..|+..++.+++.+|+..|++..|+++++...+..+. +...|..|.+-
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 4566666666666666667777777766666654333 55556555443
No 292
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=95.04 E-value=0.17 Score=42.53 Aligned_cols=86 Identities=12% Similarity=0.033 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-
Q 045674 548 VARACKILDELAPKGIIPETAFEDMITCLCKTGR----------IKEACKLADGIVDREREIPGKIRTALINALRKAGN- 616 (650)
Q Consensus 548 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~- 616 (650)
++.|.+.++.....+|.|.+.++..+.++....+ +++|+.-|++++..+ |....++..++.+|...+.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~-P~~hdAlw~lGnA~ts~A~l 85 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKIN-PNKHDALWCLGNAYTSLAFL 85 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHhh
Confidence 4667777777777778888888777777765432 455666677777776 6667888889998877653
Q ss_pred ----------HHHHHHHHHHHHHCCCCC
Q 045674 617 ----------ADLAIKLMHSKIGVGYDR 634 (650)
Q Consensus 617 ----------~~~A~~~~~~~~~~~~~~ 634 (650)
+++|...|+++.+..|..
T Consensus 86 ~~d~~~A~~~F~kA~~~FqkAv~~~P~n 113 (186)
T PF06552_consen 86 TPDTAEAEEYFEKATEYFQKAVDEDPNN 113 (186)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHH-TT-
T ss_pred cCChHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 566666666776665543
No 293
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.04 E-value=0.071 Score=31.07 Aligned_cols=28 Identities=14% Similarity=0.160 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 045674 568 AFEDMITCLCKTGRIKEACKLADGIVDR 595 (650)
Q Consensus 568 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 595 (650)
++..++.++...|++++|++.++++++.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3444455555555555555555554443
No 294
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.03 E-value=0.066 Score=31.22 Aligned_cols=32 Identities=19% Similarity=0.171 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 045674 602 KIRTALINALRKAGNADLAIKLMHSKIGVGYD 633 (650)
Q Consensus 602 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 633 (650)
.+|..++.++...|++++|++.++++++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 56888999999999999999999999997664
No 295
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=95.03 E-value=0.65 Score=45.27 Aligned_cols=87 Identities=14% Similarity=0.074 Sum_probs=34.8
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 045674 473 AKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARAC 552 (650)
Q Consensus 473 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 552 (650)
...|.++.+...+....+. +.....+..+++....+.|++++|...-..|+...++ +++.....+-..-..|-++++.
T Consensus 334 ~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~ 411 (831)
T PRK15180 334 SHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSY 411 (831)
T ss_pred HHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHH
Confidence 3344444444444333221 1123333444444444444444444444444443333 3333222222222334444444
Q ss_pred HHHHHHhhC
Q 045674 553 KILDELAPK 561 (650)
Q Consensus 553 ~~~~~~~~~ 561 (650)
..|++....
T Consensus 412 ~~wk~~~~~ 420 (831)
T PRK15180 412 HYWKRVLLL 420 (831)
T ss_pred HHHHHHhcc
Confidence 444444433
No 296
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.01 E-value=0.06 Score=32.03 Aligned_cols=28 Identities=18% Similarity=0.265 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045674 603 IRTALINALRKAGNADLAIKLMHSKIGV 630 (650)
Q Consensus 603 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 630 (650)
+|..++.+|.+.|++++|++++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3567788888888888888888886543
No 297
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.92 E-value=0.075 Score=31.03 Aligned_cols=28 Identities=14% Similarity=0.209 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 045674 568 AFEDMITCLCKTGRIKEACKLADGIVDR 595 (650)
Q Consensus 568 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 595 (650)
+|..++.++...|++++|+..|+++++.
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 3444455555555555555555554443
No 298
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.84 E-value=0.77 Score=36.91 Aligned_cols=78 Identities=12% Similarity=0.232 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH---------------HCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC-C
Q 045674 359 IYTALIDSYAKLGSMNEAINIFERMK---------------YEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRAN-G 422 (650)
Q Consensus 359 ~~~~l~~~~~~~~~~~~A~~~~~~~~---------------~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~ 422 (650)
++..++.++++.|+.+....+++..- .....|+..+..+++.+|+..|++..|.++++...+. +
T Consensus 4 ~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~ 83 (126)
T PF12921_consen 4 LLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYP 83 (126)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcC
Confidence 34445555555555555554444331 1123344555555555555555555555555444332 3
Q ss_pred CCCCHHHHHHHHHH
Q 045674 423 VAVNAMFYSSLIDG 436 (650)
Q Consensus 423 ~~~~~~~~~~l~~~ 436 (650)
++.+..+|..|++-
T Consensus 84 I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 84 IPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCHHHHHHHHHH
Confidence 34444444444443
No 299
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=94.66 E-value=0.2 Score=46.41 Aligned_cols=101 Identities=11% Similarity=-0.084 Sum_probs=69.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 045674 466 NVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLS 545 (650)
Q Consensus 466 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 545 (650)
-.-++-|.++|.+++|+..|...+...+. |.+++..-..+|.+.+++..|..-...++..+-. -...|..-+.+-...
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~-NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~-Y~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVYPH-NPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL-YVKAYSRRMQARESL 178 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccCCC-CccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH-HHHHHHHHHHHHHHH
Confidence 34577888999999999999888776332 7788888888888888888887766666653211 122344444444556
Q ss_pred CCHHHHHHHHHHHhhCCCCcHHH
Q 045674 546 GKVARACKILDELAPKGIIPETA 568 (650)
Q Consensus 546 g~~~~A~~~~~~~~~~~~~~~~~ 568 (650)
|+..+|.+-++.++...|.+.+.
T Consensus 179 g~~~EAKkD~E~vL~LEP~~~EL 201 (536)
T KOG4648|consen 179 GNNMEAKKDCETVLALEPKNIEL 201 (536)
T ss_pred hhHHHHHHhHHHHHhhCcccHHH
Confidence 77777777777777776664443
No 300
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.66 E-value=0.43 Score=44.02 Aligned_cols=78 Identities=14% Similarity=0.162 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCHHHHHHH
Q 045674 533 ASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVD-----REREIPGKIRTAL 607 (650)
Q Consensus 533 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~l 607 (650)
.++..++..+...|+++.+.+.+++.....|.+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+...+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 34556667777778888888888888888777888888888888888888888888877755 3666766666665
Q ss_pred HHH
Q 045674 608 INA 610 (650)
Q Consensus 608 ~~~ 610 (650)
..+
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 555
No 301
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=94.64 E-value=7.6 Score=41.65 Aligned_cols=259 Identities=16% Similarity=0.062 Sum_probs=137.1
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCcCH-------HHHHHHHH-HHHhcCCHHHHHHHHHHHHHC----CCCCCHHhHHHHH
Q 045674 332 LCKVGKCIEGHAIFESMIRRGCQPNV-------AIYTALID-SYAKLGSMNEAINIFERMKYE----GVEPDEVTYGVII 399 (650)
Q Consensus 332 ~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~-~~~~~~~~~~A~~~~~~~~~~----~~~p~~~~~~~l~ 399 (650)
.....++++|..++.++...-..|+. ..++.+-. .....|++++|+++-+..... ...+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 34578899999988888765222221 13333322 334578899999888777653 2233455667777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH---H--HHHHHHcCCHH--HHHHHHHHHHHc---CCCC---CHHHHH
Q 045674 400 SGLCKNERLEEAMQYFEFCRANGVAVNAMFYSS---L--IDGLGKAGRVD--EAEELFEEMVEK---GCPR---DSYCYN 466 (650)
Q Consensus 400 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---l--~~~~~~~~~~~--~A~~~~~~~~~~---~~~~---~~~~~~ 466 (650)
.+..-.|++++|..+.....+..-..+...+.. + ...+...|+.. +....|...... ..+. -..+..
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 778889999999998876655422223333322 2 23355566332 333333333222 1111 123334
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH----HHcCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHHCCCC----CCHHHHH
Q 045674 467 VLIDALAKCGKLDEALALFKRM----EDEGCDQTVYTYT--ILINGMFKEHRNEEALKLWDMMIDKGIT----PTAASFR 536 (650)
Q Consensus 467 ~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~~~--~l~~~~~~~~~~~~A~~~~~~~~~~~~~----p~~~~~~ 536 (650)
.+..++.+ ++.+..-...- ......|-...+. .|+......|+.++|...++++...... ++..+-.
T Consensus 585 ~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~ 661 (894)
T COG2909 585 QLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAA 661 (894)
T ss_pred HHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 44444444 44333333222 2222222222222 5677778899999999999998854222 2322222
Q ss_pred HHHHH--HHhcCCHHHHHHHHHHHhhCCCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 045674 537 ALSIG--LCLSGKVARACKILDELAPKGII----PETAFEDMITCLCKTGRIKEACKLADGIV 593 (650)
Q Consensus 537 ~l~~~--~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 593 (650)
..+.. ....|+.++|..++.+-..-+.. ....+..+...-...|-..+|.......-
T Consensus 662 ~~v~~~lwl~qg~~~~a~~~l~~s~~~~~~~~~~~~~~~r~i~~~~~~Lg~~~eae~al~~l~ 724 (894)
T COG2909 662 YKVKLILWLAQGDKELAAEWLLKSGDPDKANAHFPQLQWRLIAREQILLGILLEAELALDELA 724 (894)
T ss_pred HHhhHHHhcccCCHHHHHHHHHhccCchhhhhhcccccccccchHHHHHhhhhHHHHHHHHHh
Confidence 22222 34678999998888774432211 12223333333334444455554444443
No 302
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.63 E-value=0.082 Score=31.42 Aligned_cols=27 Identities=11% Similarity=0.181 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 045674 568 AFEDMITCLCKTGRIKEACKLADGIVD 594 (650)
Q Consensus 568 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 594 (650)
++..|+.+|.+.|++++|+++|++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 367788999999999999999998653
No 303
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.63 E-value=3.1 Score=37.09 Aligned_cols=208 Identities=9% Similarity=0.051 Sum_probs=105.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 045674 146 NLECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMN 225 (650)
Q Consensus 146 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 225 (650)
-...|.....+|-..++|++|...+.+..+- ...+...|.+ ..-++.|.-+.+++.+. .--+..|.--..
T Consensus 30 aas~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhA-------AKayEqaamLake~~kl--sEvvdl~eKAs~ 99 (308)
T KOG1585|consen 30 AASLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHA-------AKAYEQAAMLAKELSKL--SEVVDLYEKASE 99 (308)
T ss_pred hHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHH-------HHHHHHHHHHHHHHHHh--HHHHHHHHHHHH
Confidence 4556777788888888999888888777642 1223333321 23345555555555542 223344555566
Q ss_pred HHHhcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhC---C--CCCCHHHHHHHHHHHHhc
Q 045674 226 GLVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEAR---N--VQPDKITYMTLIQACYLE 300 (650)
Q Consensus 226 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~--~~~~~~~~~~l~~~~~~~ 300 (650)
.|...|..+.|-..+++.-+ ..+.-++++|+++|++.... + ...-...+....+.+.+.
T Consensus 100 lY~E~GspdtAAmaleKAak----------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl 163 (308)
T KOG1585|consen 100 LYVECGSPDTAAMALEKAAK----------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRL 163 (308)
T ss_pred HHHHhCCcchHHHHHHHHHH----------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhh
Confidence 77788877777666665542 12233445555555543321 0 001112333444556666
Q ss_pred CCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CcCHHHHHHHHHHHHhcCC
Q 045674 301 GDFDSCLSLYHEMDEKG-----IEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGC---QPNVAIYTALIDSYAKLGS 372 (650)
Q Consensus 301 ~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~ 372 (650)
..+++|-..+.+-.... ....-..|...|-.+.-..++..|...++.-.+.+- .-+..+...|+.+| ..|+
T Consensus 164 ~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD 242 (308)
T KOG1585|consen 164 EKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGD 242 (308)
T ss_pred HHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCC
Confidence 66666554443322110 011112344444555555666667666665433211 11334455555554 3455
Q ss_pred HHHHHHHH
Q 045674 373 MNEAINIF 380 (650)
Q Consensus 373 ~~~A~~~~ 380 (650)
.+++.+++
T Consensus 243 ~E~~~kvl 250 (308)
T KOG1585|consen 243 IEEIKKVL 250 (308)
T ss_pred HHHHHHHH
Confidence 55554443
No 304
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.56 E-value=0.92 Score=36.99 Aligned_cols=83 Identities=18% Similarity=0.092 Sum_probs=54.6
Q ss_pred HHHHHHHHH---HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Q 045674 499 TYTILINGM---FKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITC 575 (650)
Q Consensus 499 ~~~~l~~~~---~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 575 (650)
..+.|+... ...++++++..+++.|.-..++ ....-..-++.+...|++.+|..+|+++.+.++..+..-..++.|
T Consensus 9 iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~-~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~C 87 (153)
T TIGR02561 9 LLGGLIEVLMYALRSADPYDAQAMLDALRVLRPN-LKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALC 87 (153)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-ccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHH
Confidence 344454433 3578888888888888775444 223333445667888899999999988887765555555555666
Q ss_pred HHHcCCH
Q 045674 576 LCKTGRI 582 (650)
Q Consensus 576 ~~~~g~~ 582 (650)
+...|+.
T Consensus 88 L~al~Dp 94 (153)
T TIGR02561 88 LNAKGDA 94 (153)
T ss_pred HHhcCCh
Confidence 6666653
No 305
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.38 E-value=2.5 Score=34.95 Aligned_cols=40 Identities=30% Similarity=0.242 Sum_probs=17.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh
Q 045674 329 IGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAK 369 (650)
Q Consensus 329 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 369 (650)
+..+...+.......+++.+...+. .+...++.++..|++
T Consensus 14 v~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~ 53 (140)
T smart00299 14 VELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHH
Confidence 3333334444444444444444432 334444445555543
No 306
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.30 E-value=0.6 Score=43.12 Aligned_cols=78 Identities=21% Similarity=0.248 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 045674 148 ECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELLWVWRSMKE-----NGIEPSLYTYNF 222 (650)
Q Consensus 148 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 222 (650)
.++..++..+...|+++.+...++++.... +.+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 345567777777777777777777777765 66777777777777777777777777777655 355555554444
Q ss_pred HHHH
Q 045674 223 LMNG 226 (650)
Q Consensus 223 ll~~ 226 (650)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4333
No 307
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=94.18 E-value=6.8 Score=41.80 Aligned_cols=43 Identities=16% Similarity=0.155 Sum_probs=22.2
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 045674 257 TMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLE 300 (650)
Q Consensus 257 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 300 (650)
.+|-.+.++|++++|.++..+.... .......+...+..|...
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 4555666777777777776444332 223334455555555543
No 308
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.16 E-value=0.11 Score=30.28 Aligned_cols=31 Identities=16% Similarity=0.145 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 045674 602 KIRTALINALRKAGNADLAIKLMHSKIGVGY 632 (650)
Q Consensus 602 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 632 (650)
.+|..++.+|...|++++|+..++++++..+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 3566677777777777777777777776554
No 309
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.03 E-value=3.1 Score=34.71 Aligned_cols=53 Identities=15% Similarity=0.019 Sum_probs=27.0
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045674 473 AKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDK 526 (650)
Q Consensus 473 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 526 (650)
.+.++.+++..++..+.-..+. ....-..-+..+...|++.+|..+|+++.+.
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~-~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPE-FPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 3456666666666666554322 1111111223345666666666666666544
No 310
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.89 E-value=6 Score=37.53 Aligned_cols=130 Identities=13% Similarity=0.271 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh--cC----CHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHcCC--
Q 045674 374 NEAINIFERMKYEGVEPDEVTYGVIISGLCK--NE----RLEEAMQYFEFCRANGVAV---NAMFYSSLIDGLGKAGR-- 442 (650)
Q Consensus 374 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~--~g----~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~-- 442 (650)
++.+.+++.+.+.|+.-+..+|-+....... .. ....|..+|+.|++..+-. +...+..++.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3445566666666666655554443222222 11 2345666677776654322 22333333222 2222
Q ss_pred --HHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 045674 443 --VDEAEELFEEMVEKGCPRDSY--CYNVLIDALAKCGK--LDEALALFKRMEDEGCDQTVYTYTILIN 505 (650)
Q Consensus 443 --~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 505 (650)
.+.+..+|+.+.+.|+..+-. ....++........ ...+.++++.+.+.|++.....|..++-
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 344555666666655443322 22222222111111 3355666666666666666555555443
No 311
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=93.89 E-value=7.2 Score=38.45 Aligned_cols=88 Identities=11% Similarity=0.033 Sum_probs=43.1
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCChhHH
Q 045674 192 FGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKA 271 (650)
Q Consensus 192 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 271 (650)
+...|+++.+.+.+....+. +.....+...+++...+.|+++.|..+-+-|+...++ +......-....-..|-++++
T Consensus 333 ~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~ 410 (831)
T PRK15180 333 FSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKS 410 (831)
T ss_pred HHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHH
Confidence 34456666666555544333 2233445555566666666666666666655544332 222222222222333555666
Q ss_pred HHHHHHHHhC
Q 045674 272 MEKFRAMEAR 281 (650)
Q Consensus 272 ~~~~~~~~~~ 281 (650)
.-.++.+...
T Consensus 411 ~~~wk~~~~~ 420 (831)
T PRK15180 411 YHYWKRVLLL 420 (831)
T ss_pred HHHHHHHhcc
Confidence 6666555443
No 312
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=93.53 E-value=8.8 Score=38.27 Aligned_cols=99 Identities=10% Similarity=0.049 Sum_probs=64.9
Q ss_pred CCHHHH-HHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 045674 530 PTAASF-RALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLC--KTGRIKEACKLADGIVDREREIPGKIRTA 606 (650)
Q Consensus 530 p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 606 (650)
++..++ +.+...+.+.|-+.+|...+..+....|.+-..+..+++.-. ..-+...+.++|+.++..- ..|+..|..
T Consensus 457 ~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~f-g~d~~lw~~ 535 (568)
T KOG2396|consen 457 ADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREF-GADSDLWMD 535 (568)
T ss_pred CceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHh-CCChHHHHH
Confidence 344433 345566667777888888888887775556666666655432 2223677777888777652 367777777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 045674 607 LINALRKAGNADLAIKLMHSKIG 629 (650)
Q Consensus 607 l~~~~~~~g~~~~A~~~~~~~~~ 629 (650)
+...-..+|..+.+-.++.++.+
T Consensus 536 y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 536 YMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHhhccCCCcccccHHHHHHHH
Confidence 66666677887777777777665
No 313
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=93.47 E-value=7.3 Score=37.17 Aligned_cols=145 Identities=14% Similarity=0.080 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----C--
Q 045674 443 VDEAEELFEEMVEKGCPRDSYCYNVLIDALAK----CGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKE-----H-- 511 (650)
Q Consensus 443 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~-- 511 (650)
..+|.++++.+.+.| .......|...|.. ..+..+|...|+++.+.|..+...+...+...|..- -
T Consensus 93 ~~~A~~~~~~~a~~g---~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~ 169 (292)
T COG0790 93 KTKAADWYRCAAADG---LAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAY 169 (292)
T ss_pred HHHHHHHHHHHhhcc---cHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccH
Confidence 444555555444433 22233334444433 225555666666655554332211222333333221 1
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcC-------
Q 045674 512 RNEEALKLWDMMIDKGITPTAASFRALSIGLCL----SGKVARACKILDELAPKGIIPETAFEDMITCLCKTG------- 580 (650)
Q Consensus 512 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------- 580 (650)
+...|...+.++...+ +......++..|.. ..+.++|..+|.++.+.+. ......++ .+...|
T Consensus 170 ~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~ 243 (292)
T COG0790 170 DDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAA 243 (292)
T ss_pred HHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhh
Confidence 2246777777777665 44455555555533 2377888888888888765 55555555 555555
Q ss_pred --------CHHHHHHHHHHHHHcC
Q 045674 581 --------RIKEACKLADGIVDRE 596 (650)
Q Consensus 581 --------~~~~A~~~~~~~~~~~ 596 (650)
+...|...+......+
T Consensus 244 ~~~~~~~~~~~~a~~~~~~~~~~~ 267 (292)
T COG0790 244 FLTAAKEEDKKQALEWLQKACELG 267 (292)
T ss_pred hcccccCCCHHHHHHHHHHHHHcC
Confidence 5666666666666555
No 314
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.23 E-value=0.058 Score=49.96 Aligned_cols=124 Identities=11% Similarity=-0.018 Sum_probs=85.7
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHH
Q 045674 507 MFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEAC 586 (650)
Q Consensus 507 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 586 (650)
....|.+++|++.|...+..++ +....+..-..++.+.++...|++=+..+.+.+++...-|-.-+.+....|++++|.
T Consensus 124 Aln~G~~~~ai~~~t~ai~lnp-~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELNP-PLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred HhcCcchhhhhcccccccccCC-chhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHH
Confidence 3456778888888888877643 355566666777778888888888888888887776666666666677778888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 045674 587 KLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYD 633 (650)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 633 (650)
+.++.+.+.++.+....| +-...-+.+..++-...+++..+....
T Consensus 203 ~dl~~a~kld~dE~~~a~--lKeV~p~a~ki~e~~~k~er~~~e~~~ 247 (377)
T KOG1308|consen 203 HDLALACKLDYDEANSAT--LKEVFPNAGKIEEHRRKYERAREEREI 247 (377)
T ss_pred HHHHHHHhccccHHHHHH--HHHhccchhhhhhchhHHHHHHHHhcc
Confidence 888888887755544433 344455566666666666666665443
No 315
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.16 E-value=1.4 Score=39.18 Aligned_cols=65 Identities=14% Similarity=0.020 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 045674 568 AFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYD 633 (650)
Q Consensus 568 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 633 (650)
.+.++.+|+...|++-++++....++... +.+..+|..-+.+....=+..+|..-+.++++..+.
T Consensus 232 LllNy~QC~L~~~e~yevleh~seiL~~~-~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 232 LLLNYCQCLLKKEEYYEVLEHCSEILRHH-PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence 34445555555666666666666665554 445555555555555555556666666666655554
No 316
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.05 E-value=2 Score=37.21 Aligned_cols=95 Identities=13% Similarity=-0.014 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHH--H-
Q 045674 534 SFRALSIGLCLSGKVARACKILDELAPKGII---PETAFEDMITCLCKTGRIKEACKLADGIVDREREI-PGKIRT--A- 606 (650)
Q Consensus 534 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~--~- 606 (650)
.+..++..|.+.|+.++|.+.|.++.+.... -.+++..++.+....|++..+...+.++...-... |....+ .
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 3445566666666666666666666554333 23445556666666666666666665554331111 111111 1
Q ss_pred -HHHHHHhcCCHHHHHHHHHHHH
Q 045674 607 -LINALRKAGNADLAIKLMHSKI 628 (650)
Q Consensus 607 -l~~~~~~~g~~~~A~~~~~~~~ 628 (650)
-+-.+...|++.+|-+.|-...
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHccC
Confidence 1222455677777766665543
No 317
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.80 E-value=9 Score=36.36 Aligned_cols=120 Identities=18% Similarity=0.264 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--cC----CHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHhcCCH
Q 045674 443 VDEAEELFEEMVEKGCPRDSYCYNVLIDALAK--CG----KLDEALALFKRMEDEGCD---QTVYTYTILINGMFKEHRN 513 (650)
Q Consensus 443 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g----~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 513 (650)
+++.+.+++.+.+.|+..+..++.+....... .. ....|..+|+.|.+..+. ++...+..++.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34455666666666666665544432222222 11 244566667777665332 333344444322 22222
Q ss_pred ----HHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhc--CCHHHHHHHHHHHhhCCCC
Q 045674 514 ----EEALKLWDMMIDKGITPTAA--SFRALSIGLCLS--GKVARACKILDELAPKGII 564 (650)
Q Consensus 514 ----~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~ 564 (650)
+.+..+|+.+.+.|+..+.. .+..++...... .....+.++++.+.+.+..
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~k 214 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVK 214 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCc
Confidence 44555566666555543322 111111111100 1134555666666666555
No 318
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=92.77 E-value=2 Score=34.25 Aligned_cols=68 Identities=15% Similarity=0.129 Sum_probs=46.6
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHhh-CCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 045674 529 TPTAASFRALSIGLCLSGK---VARACKILDELAP-KGII-PETAFEDMITCLCKTGRIKEACKLADGIVDRE 596 (650)
Q Consensus 529 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 596 (650)
.++..+-..++|++.+..+ ..+.+.+++.+.+ ..+. ..+....|+-++.+.|++++++++.+.+++..
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e 101 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE 101 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 5566777777888876654 4556677777775 3333 45566667777778888888888888777653
No 319
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.71 E-value=6 Score=34.11 Aligned_cols=92 Identities=13% Similarity=0.031 Sum_probs=66.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCC
Q 045674 504 INGMFKEHRNEEALKLWDMMIDKGITPTA--ASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGR 581 (650)
Q Consensus 504 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 581 (650)
...+...+++++|...++..+..-.+-+. .+-..|++.....|.+++|+..++...+.+. .......-++++...|+
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w-~~~~~elrGDill~kg~ 174 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW-AAIVAELRGDILLAKGD 174 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH-HHHHHHHhhhHHHHcCc
Confidence 44567889999999998887753211111 1123456777889999999999988765432 23344557889999999
Q ss_pred HHHHHHHHHHHHHcC
Q 045674 582 IKEACKLADGIVDRE 596 (650)
Q Consensus 582 ~~~A~~~~~~~~~~~ 596 (650)
-++|+.-|+++++.+
T Consensus 175 k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 175 KQEARAAYEKALESD 189 (207)
T ss_pred hHHHHHHHHHHHHcc
Confidence 999999999999875
No 320
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.68 E-value=1.7 Score=37.59 Aligned_cols=63 Identities=10% Similarity=0.036 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 045674 148 ECYISLIDCLALCGDVDRVRLVFNELKEKGFLM--TVSAANSLIKSFGGLGMVEELLWVWRSMKE 210 (650)
Q Consensus 148 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 210 (650)
..+..++..|.+.|+.+.|.+.|.++.+....+ -...+..+++.....|++..+.....+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 456667777777777777777777766542221 233455566666666666666666555543
No 321
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=92.62 E-value=17 Score=39.17 Aligned_cols=222 Identities=11% Similarity=0.011 Sum_probs=110.5
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCCCHH-------HHHHHHH-HHHhcCChhHHHHHHHHHhcC----CCCCChhhHHHHHH
Q 045674 193 GGLGMVEELLWVWRSMKENGIEPSLY-------TYNFLMN-GLVNSMFIESSELVFKVMENG----KVGPDVVTYNTMIK 260 (650)
Q Consensus 193 ~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~ll~-~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~l~~ 260 (650)
..+.++++|..+..++...-..|+.. .++.|-. .....|+++.|.++.+..... ........+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 45678888887777766542222211 2333322 234567788887777766542 22334556666777
Q ss_pred HHHHcCChhHHHHHHHHHHhCCCCCCHHHHH---HH--HHHHHhcCC--HHHHHHHHHHHHHCC---CC---CCHHHHHH
Q 045674 261 GYCKVGKTQKAMEKFRAMEARNVQPDKITYM---TL--IQACYLEGD--FDSCLSLYHEMDEKG---IE---IPSHAYNL 327 (650)
Q Consensus 261 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~---~l--~~~~~~~~~--~~~a~~~~~~~~~~~---~~---~~~~~~~~ 327 (650)
+..-.|++++|..+.+...+..-.-+...+. .+ ...+...|+ +.+.+..|....... .+ +-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 7777888888888877665532122332222 22 233445563 223333333332211 11 11223334
Q ss_pred HHHHHHhcCChHHHHHHHHHHHH----cCCCcCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----CHHhHHH
Q 045674 328 VIGGLCKVGKCIEGHAIFESMIR----RGCQPNVA--IYTALIDSYAKLGSMNEAINIFERMKYEGVEP----DEVTYGV 397 (650)
Q Consensus 328 l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p----~~~~~~~ 397 (650)
++.++.+ ++.+..-.....+ ....|-.. .+..|+..+...|+.++|...+.++......+ +..+...
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~ 662 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAY 662 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 4444444 3333222222222 21121111 22356777788889998888888876532222 2222222
Q ss_pred HHHH--HHhcCCHHHHHHHHHH
Q 045674 398 IISG--LCKNERLEEAMQYFEF 417 (650)
Q Consensus 398 l~~~--~~~~g~~~~a~~~~~~ 417 (650)
.+.. ....|+.+.+.....+
T Consensus 663 ~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 663 KVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HhhHHHhcccCCHHHHHHHHHh
Confidence 2222 3346777777666654
No 322
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=92.55 E-value=0.25 Score=28.37 Aligned_cols=25 Identities=28% Similarity=0.283 Sum_probs=12.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC
Q 045674 606 ALINALRKAGNADLAIKLMHSKIGV 630 (650)
Q Consensus 606 ~l~~~~~~~g~~~~A~~~~~~~~~~ 630 (650)
.++.++.+.|++++|++.++++++.
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3444444445555555555544443
No 323
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=92.54 E-value=0.44 Score=47.63 Aligned_cols=98 Identities=11% Similarity=-0.027 Sum_probs=59.7
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 045674 509 KEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKL 588 (650)
Q Consensus 509 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 588 (650)
..|+...|..++..+....+.-....+..++..+.+.|..-+|-.++.+.+......+-.+..++.++....+.+.|++.
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHH
Confidence 35666666666666654433333444556666666666666677777666665544555666666777777777777777
Q ss_pred HHHHHHcCCCCCHHHHHHH
Q 045674 589 ADGIVDREREIPGKIRTAL 607 (650)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~l 607 (650)
++.++++. +.+.++-+.|
T Consensus 699 ~~~a~~~~-~~~~~~~~~l 716 (886)
T KOG4507|consen 699 FRQALKLT-TKCPECENSL 716 (886)
T ss_pred HHHHHhcC-CCChhhHHHH
Confidence 77776664 4444444443
No 324
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=92.51 E-value=13 Score=37.32 Aligned_cols=179 Identities=12% Similarity=0.127 Sum_probs=119.1
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 045674 355 PNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLI 434 (650)
Q Consensus 355 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 434 (650)
.|....-+++..+.......-...+..+|..-| .+...|..++.+|... .-+.-..+++++.+..+. |...-..|+
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence 355556677888887777777888888888753 3667788888888887 557788888888887665 555555566
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCC--C---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHH
Q 045674 435 DGLGKAGRVDEAEELFEEMVEKGCPR--D---SYCYNVLIDALAKCGKLDEALALFKRMEDE-GCDQTVYTYTILINGMF 508 (650)
Q Consensus 435 ~~~~~~~~~~~A~~~~~~~~~~~~~~--~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~ 508 (650)
..|.+ ++.+.+...|..+...-++. + ...|..+...- ..+.+....+..++... |..--...+.-+-.-|.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 65555 88888999998888763321 1 12444444321 35666667766666543 33334445555556677
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 045674 509 KEHRNEEALKLWDMMIDKGITPTAASFRALSIG 541 (650)
Q Consensus 509 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 541 (650)
...++.+|++++..+++..-. |...-..++.-
T Consensus 217 ~~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~~ 248 (711)
T COG1747 217 ENENWTEAIRILKHILEHDEK-DVWARKEIIEN 248 (711)
T ss_pred cccCHHHHHHHHHHHhhhcch-hhhHHHHHHHH
Confidence 888999999999988876433 55544444443
No 325
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=92.40 E-value=1.3 Score=38.61 Aligned_cols=130 Identities=17% Similarity=0.164 Sum_probs=70.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC---cHHHHHHHHHHHH
Q 045674 501 TILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGII---PETAFEDMITCLC 577 (650)
Q Consensus 501 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~ 577 (650)
+.-+..+.+.+...+|+...+.-++..+. |...-..+.+.++-.|++++|..-++-+....+. ....|.+++.+-.
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ea 83 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRCEA 83 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHH
Confidence 34455666777778888777777765443 5555566777778888888888877777766555 3455666655422
Q ss_pred HcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCChhh
Q 045674 578 KTGRIKEACKLADGIVDRERE--IPGKIRTALINA--LRKAGNADLAIKLMHSKIGVGYDRMGS 637 (650)
Q Consensus 578 ~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~ 637 (650)
... ++|.--..-++. |.+.-...+..+ +...|.-+.+..+-+.+++.++.+.+.
T Consensus 84 ~R~------evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~iG~ 141 (273)
T COG4455 84 ARN------EVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVPIGH 141 (273)
T ss_pred HHH------HHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCCcc
Confidence 111 112111111111 222222222222 223334455666667777777776554
No 326
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.23 E-value=6.8 Score=38.79 Aligned_cols=307 Identities=15% Similarity=0.074 Sum_probs=159.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH--HHHHHHHHc----CC-------CcCHHHHH
Q 045674 295 QACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGH--AIFESMIRR----GC-------QPNVAIYT 361 (650)
Q Consensus 295 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~--~~~~~~~~~----~~-------~~~~~~~~ 361 (650)
..-...+.++.+.+.+..+...|.......++.-...|.+.|...... +-++.+... |. ......+.
T Consensus 25 ~~~f~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~~~ll~el~aL~~~~~~~~~~~~gld~~~~t~~~y 104 (696)
T KOG2471|consen 25 HEQFNNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQHSVLLKELEALTADADAPGDVSSGLSLKQGTVMDY 104 (696)
T ss_pred HhccCCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchhHHHHHHHHHHHHhhccccchhcchhhhcchHHhh
Confidence 333457789999999999998887777777888888888888654332 222222111 10 01122222
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhH-----HHHHHHHHhcCCHHHHHHHHHHH---HHCC-CCC--CHHHH
Q 045674 362 ALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTY-----GVIISGLCKNERLEEAMQYFEFC---RANG-VAV--NAMFY 430 (650)
Q Consensus 362 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~-----~~l~~~~~~~g~~~~a~~~~~~~---~~~~-~~~--~~~~~ 430 (650)
...-+|.....+..|+++...+... ..|=...+ ......+......++|+.++.-+ ...+ ..+ +...-
T Consensus 105 n~aVi~yh~~~~g~a~~~~~~lv~r-~e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~~~gn~~~~ 183 (696)
T KOG2471|consen 105 NFAVIFYHHEENGSAMQLSSNLVSR-TESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMKLVGNHIPA 183 (696)
T ss_pred hhheeeeeHhhcchHHHhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccch
Confidence 3334444455555666655544332 01100000 11112234444555555544332 2111 000 00000
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHh
Q 045674 431 SSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRME-DEGCDQTVYTYTILINGMFK 509 (650)
Q Consensus 431 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~ 509 (650)
....+.+....|..-+-... +.......-+..|.+..+...+..-.+... ..+ .+......-...+..
T Consensus 184 ----nn~~kt~s~~aAe~s~~~a~-----~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~--~s~~~l~LKsq~eY~ 252 (696)
T KOG2471|consen 184 ----NNLLKTLSPSAAERSFSTAD-----LKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQ--DSSMALLLKSQLEYA 252 (696)
T ss_pred ----hhhcccCCcchhcccchhhc-----cchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcC--CCcHHHHHHHHHHHH
Confidence 01111122222221111100 111111222333444444444433333222 121 122222222334557
Q ss_pred cCCHHHHHHHHHHHH---HCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhh-------CCCC----------
Q 045674 510 EHRNEEALKLWDMMI---DKGITPT-----AASFRALSIGLCLSGKVARACKILDELAP-------KGII---------- 564 (650)
Q Consensus 510 ~~~~~~A~~~~~~~~---~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~---------- 564 (650)
.|++.+|.+++...- ..|..-+ ...++.++..+.+.|.+.-+..+|.+++. .|..
T Consensus 253 ~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~n 332 (696)
T KOG2471|consen 253 HGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQN 332 (696)
T ss_pred hcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcc
Confidence 899999999886543 1221112 12346777778889999999999988874 2311
Q ss_pred -cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 045674 565 -PETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKA 614 (650)
Q Consensus 565 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 614 (650)
.-++.+..+-.|...|+.-.|.+.|.++.+. +..++..|..++.+|...
T Consensus 333 ks~eilYNcG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 333 KSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIMA 382 (696)
T ss_pred cchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHH
Confidence 3456777888999999999999999999886 477899999999998764
No 327
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=92.20 E-value=9.4 Score=35.16 Aligned_cols=74 Identities=19% Similarity=0.227 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCChhhhhhhh
Q 045674 568 AFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIG-----VGYDRMGSIKRRV 642 (650)
Q Consensus 568 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~~ 642 (650)
.+......|..+|.+.+|.++.+++++.+ +.+...+..+...+...|+--.|.+.++++-+ .|+.-+..+..+.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsieewy 359 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIEEWY 359 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHHHHh
Confidence 44556788899999999999999999987 78889999999999999998888888877654 4776666665543
No 328
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=92.18 E-value=0.54 Score=41.46 Aligned_cols=118 Identities=14% Similarity=0.024 Sum_probs=65.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHH
Q 045674 506 GMFKEHRNEEALKLWDMMIDKGITPTA-ASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKE 584 (650)
Q Consensus 506 ~~~~~~~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 584 (650)
.|....+++.|+..|.+.+.. .|+. ..|..-+.++.+..+++.+..--.++++..+.......-++.++.....+++
T Consensus 19 k~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred cccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence 344455666666666666653 3444 2334445555666666666666666666655555555666666666666777
Q ss_pred HHHHHHHHHHc----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 045674 585 ACKLADGIVDR----EREIPGKIRTALINALRKAGNADLAIKLMH 625 (650)
Q Consensus 585 A~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 625 (650)
|+..+.++... ..++-..++..|..+-.+.=...+...+.+
T Consensus 97 aI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q 141 (284)
T KOG4642|consen 97 AIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQ 141 (284)
T ss_pred HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHH
Confidence 77766666332 223344555555554333333344444333
No 329
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=92.18 E-value=1.7 Score=39.49 Aligned_cols=84 Identities=19% Similarity=0.201 Sum_probs=47.4
Q ss_pred CHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC----------------HHHHHHH
Q 045674 426 NAMFYSSLIDGLGKA-----GRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGK----------------LDEALAL 484 (650)
Q Consensus 426 ~~~~~~~l~~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------------~~~A~~~ 484 (650)
|...|...+..+... +.++-....++.|.+-|+..|..+|+.|++.+-+..- -+-++++
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~v 145 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKV 145 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHH
Confidence 556666666655432 4566666666777777777777777777776654221 1224444
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHh
Q 045674 485 FKRMEDEGCDQTVYTYTILINGMFK 509 (650)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~l~~~~~~ 509 (650)
+++|...|+.||..+-..|+.++.+
T Consensus 146 LeqME~hGVmPdkE~e~~lvn~FGr 170 (406)
T KOG3941|consen 146 LEQMEWHGVMPDKEIEDILVNAFGR 170 (406)
T ss_pred HHHHHHcCCCCchHHHHHHHHHhcc
Confidence 5555555555555555555544433
No 330
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.08 E-value=5.8 Score=32.52 Aligned_cols=52 Identities=8% Similarity=0.100 Sum_probs=30.9
Q ss_pred HcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 045674 474 KCGKLDEALALFKRMEDEGCD-QTVYTYTILINGMFKEHRNEEALKLWDMMIDKG 527 (650)
Q Consensus 474 ~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 527 (650)
..++.+++..++..|.-..+. +...++. +..+...|++++|..+|++..+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFD--GWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhH--HHHHHHcCCHHHHHHHHHhhhccC
Confidence 467777777777777654332 2222332 233456777777777777776654
No 331
>PRK11619 lytic murein transglycosylase; Provisional
Probab=91.84 E-value=21 Score=38.34 Aligned_cols=208 Identities=9% Similarity=0.008 Sum_probs=117.5
Q ss_pred cCCHHHHHHHHHHHHHC-CCCCCH--HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 045674 370 LGSMNEAINIFERMKYE-GVEPDE--VTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEA 446 (650)
Q Consensus 370 ~~~~~~A~~~~~~~~~~-~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 446 (650)
..+.+.|..++.+.... ++.+.. ..+..+.......+...++...++...... .+......-+......++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHH
Confidence 45668888888887443 222222 233344333333333566777776654332 2444455555566688899988
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 045674 447 EELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEA-LKLWDMMID 525 (650)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A-~~~~~~~~~ 525 (650)
...+..|.... .....-.+-++.++...|+.++|...|+.+... .+ .|..|.. .+.|..-.- ...... ..
T Consensus 332 ~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~---~~--fYG~LAa--~~Lg~~~~~~~~~~~~-~~ 402 (644)
T PRK11619 332 NTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ---RG--FYPMVAA--QRLGEEYPLKIDKAPK-PD 402 (644)
T ss_pred HHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC---CC--cHHHHHH--HHcCCCCCCCCCCCCc-hh
Confidence 88888876542 345566677888888889999999999987442 12 2322222 222321000 000000 00
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045674 526 KGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGI 592 (650)
Q Consensus 526 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 592 (650)
..+..+ ....-+..+...|+...|...+..+... .+..-...++......|.++.++......
T Consensus 403 ~~~~~~--~~~~ra~~L~~~g~~~~a~~ew~~~~~~--~~~~~~~~la~~A~~~g~~~~ai~~~~~~ 465 (644)
T PRK11619 403 SALTQG--PEMARVRELMYWNMDNTARSEWANLVAS--RSKTEQAQLARYAFNQQWWDLSVQATIAG 465 (644)
T ss_pred hhhccC--hHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCHHHHHHHHhhc
Confidence 000001 1122344566778888888888887764 24455566667777888888877766543
No 332
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.77 E-value=7.3 Score=33.01 Aligned_cols=134 Identities=16% Similarity=0.166 Sum_probs=66.0
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 045674 273 EKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRG 352 (650)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 352 (650)
++++.+.+.++.++...+..++..+.+.|++..... +...++-+|.......+-.+ .+....+.++--+|..+
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~--~~~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSL--GNQYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHh--HccChHHHHHHHHHHHH-
Confidence 445555566667777777777777777776554333 33334433433333222111 12223333333333332
Q ss_pred CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045674 353 CQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRA 420 (650)
Q Consensus 353 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 420 (650)
=...+..++..+...|++-+|+.+..+.... +......++.+..+.++...-..+++....
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1112445666677777777777776664321 222234455555555555444444444333
No 333
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.76 E-value=20 Score=38.00 Aligned_cols=102 Identities=10% Similarity=0.037 Sum_probs=59.6
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHc
Q 045674 189 IKSFGGLGMVEELLWVWRSMKENGIEP---SLYTYNFLMNGLVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKV 265 (650)
Q Consensus 189 ~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 265 (650)
+..+.+.+.+++|+...+..... .+ -......++..+...|++++|....-.|. .-+..-|...+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~----gn~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKML----GNNAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHh----cchHHHHHHHHHHhccc
Confidence 34455566777777666554432 22 23345666777777888888888777777 33566777777767666
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 045674 266 GKTQKAMEKFRAMEARNVQPDKITYMTLIQACYL 299 (650)
Q Consensus 266 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 299 (650)
++......++ .......+...|..++..+..
T Consensus 437 ~~l~~Ia~~l---Pt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 DQLTDIAPYL---PTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccchhhccC---CCCCcccCchHHHHHHHHHHH
Confidence 6655443322 221122345566666666655
No 334
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=91.56 E-value=1.9 Score=39.22 Aligned_cols=33 Identities=18% Similarity=0.347 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCC
Q 045674 340 EGHAIFESMIRRGCQPNVAIYTALIDSYAKLGS 372 (650)
Q Consensus 340 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 372 (650)
-++.++++|...|+.||..+-..|+.++.+.+.
T Consensus 141 C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 141 CAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 355666666666666666666666666665554
No 335
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=91.44 E-value=14 Score=35.69 Aligned_cols=115 Identities=14% Similarity=0.072 Sum_probs=56.7
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHH
Q 045674 481 ALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCL---SGKVARACKILDE 557 (650)
Q Consensus 481 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~ 557 (650)
-+.+++++++.++ .+...+..++..+.+..+.++..+.|++++...+. +...|...+..... .-.+++....|.+
T Consensus 50 klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~ 127 (321)
T PF08424_consen 50 KLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSDVRDVYEK 127 (321)
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence 3444555444433 24444444455555555555555555555544222 34444443333221 1123344444433
Q ss_pred HhhC------CC-----C-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 045674 558 LAPK------GI-----I-------PETAFEDMITCLCKTGRIKEACKLADGIVDRER 597 (650)
Q Consensus 558 ~~~~------~~-----~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 597 (650)
.+.. +. . -..++..+...+...|..+.|..+++.+++.++
T Consensus 128 ~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 128 CLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 3310 00 0 113444556666788888888888888888764
No 336
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=91.42 E-value=0.41 Score=27.76 Aligned_cols=26 Identities=12% Similarity=0.166 Sum_probs=12.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045674 604 RTALINALRKAGNADLAIKLMHSKIG 629 (650)
Q Consensus 604 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 629 (650)
|..++..|...|++++|.+.|+++++
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44444445555555555555555444
No 337
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=91.15 E-value=4.8 Score=32.22 Aligned_cols=73 Identities=10% Similarity=0.100 Sum_probs=43.5
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcH
Q 045674 494 DQTVYTYTILINGMFKEHR---NEEALKLWDMMID-KGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPE 566 (650)
Q Consensus 494 ~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 566 (650)
.++..+-..+..++.++.+ ..+.+.++++..+ ..+.-.......|+-++.+.+++++++++.+.+++..+.+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~ 105 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNR 105 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcH
Confidence 3455555555666665443 4556667777764 33333444555666677777777777777777776655543
No 338
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=90.99 E-value=12 Score=33.98 Aligned_cols=131 Identities=10% Similarity=0.059 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 045674 513 NEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVA-RACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADG 591 (650)
Q Consensus 513 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 591 (650)
..+-++.++++.+.+++ +-..|..--......|+.. .-+++...|+..+.++-.+|.+--.++..-+.++.-+.+..+
T Consensus 94 L~~El~~l~eI~e~npK-NYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~ 172 (318)
T KOG0530|consen 94 LNKELEYLDEIIEDNPK-NYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADE 172 (318)
T ss_pred HHHHHHHHHHHHHhCcc-chhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHH
Confidence 44445555555554443 4443332222223334444 455556666655445555666655555555556666666666
Q ss_pred HHHcCCCCCHHHHHHHHHHHHh-cC-----CHHHHHHHHHHHHHCCCCChhhhhhhhccc
Q 045674 592 IVDREREIPGKIRTALINALRK-AG-----NADLAIKLMHSKIGVGYDRMGSIKRRVKFR 645 (650)
Q Consensus 592 ~~~~~~~~~~~~~~~l~~~~~~-~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 645 (650)
+++.++. |..+|+.---.... .| ..+.-+.+..+.+..-|...+..+++..+.
T Consensus 173 Lle~Di~-NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l 231 (318)
T KOG0530|consen 173 LLEEDIR-NNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLL 231 (318)
T ss_pred HHHHhhh-ccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Confidence 6655533 22333321111001 11 123334445555555555666665555443
No 339
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=90.84 E-value=1.4 Score=44.30 Aligned_cols=139 Identities=14% Similarity=0.043 Sum_probs=98.2
Q ss_pred CCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-cHHHHHH
Q 045674 495 QTVYTYTILINGMFKE--HRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGII-PETAFED 571 (650)
Q Consensus 495 ~~~~~~~~l~~~~~~~--~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~ 571 (650)
|+..+...++.-.... ...+-+..++.. .+.-+.|--.+++..+-.+...|+...|.+.+..+....|. .......
T Consensus 569 ~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~-~~~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~ 647 (886)
T KOG4507|consen 569 PDDHARKILLSRINNYTIPEEEIGSFLFHA-INKPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVN 647 (886)
T ss_pred chHHHHHHHHHHHhcccCcHHHHHHHHHHH-hcCCCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHH
Confidence 4555555544333211 112233333333 33333443334444443445689999999999999877676 5556778
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCh
Q 045674 572 MITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYDRM 635 (650)
Q Consensus 572 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 635 (650)
|+.++.+.|-...|-.++.+.+... ...+.++..+++++....+.++|++.++.++++.+...
T Consensus 648 la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~ 710 (886)
T KOG4507|consen 648 LANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCP 710 (886)
T ss_pred HHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCCh
Confidence 8999999999999999999999876 56677888999999999999999999999999987743
No 340
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=90.74 E-value=4.8 Score=35.81 Aligned_cols=118 Identities=15% Similarity=0.037 Sum_probs=82.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCH
Q 045674 471 ALAKCGKLDEALALFKRMEDEGCDQTV-YTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAA-SFRALSIGLCLSGKV 548 (650)
Q Consensus 471 ~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~ 548 (650)
.|....+++.|+..|.+.+.. .|+. .-|+.=+.++.+.++++.+..--.+.++. .||.. ....++.++.....+
T Consensus 19 k~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred cccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhccc
Confidence 366667899999988888876 4555 44566677788899999988888887774 44543 556677888889999
Q ss_pred HHHHHHHHHHhhCC----CC-cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045674 549 ARACKILDELAPKG----II-PETAFEDMITCLCKTGRIKEACKLADGI 592 (650)
Q Consensus 549 ~~A~~~~~~~~~~~----~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 592 (650)
++|+..+.++.... +. -..+...|..+-...=...+..++.++.
T Consensus 95 ~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 99999999986432 22 3455666655544444455666665544
No 341
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.58 E-value=3.4 Score=41.88 Aligned_cols=150 Identities=19% Similarity=0.122 Sum_probs=87.0
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 045674 369 KLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEE 448 (650)
Q Consensus 369 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 448 (650)
..|+++.|..++..+. ....+.+...+.++|..++|+++- ..++. -.....+.|+++.|.+
T Consensus 598 mrrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~s-------~D~d~-----rFelal~lgrl~iA~~ 658 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALELS-------TDPDQ-----RFELALKLGRLDIAFD 658 (794)
T ss_pred hhccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhcC-------CChhh-----hhhhhhhcCcHHHHHH
Confidence 3456666655444333 123344555566667666665432 22221 1223456677777776
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 045674 449 LFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGI 528 (650)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 528 (650)
+..+. .+..-|..|..+..+.|++..|.+.|.+..+ |..|+-.+...|+.+....+-....+.|.
T Consensus 659 la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~ 723 (794)
T KOG0276|consen 659 LAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK 723 (794)
T ss_pred HHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc
Confidence 65443 3555677888888888888888877776554 34455556666776665555555555543
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 045674 529 TPTAASFRALSIGLCLSGKVARACKILDEL 558 (650)
Q Consensus 529 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 558 (650)
. |... .+|...|+++++.+++..-
T Consensus 724 ~-N~AF-----~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 724 N-NLAF-----LAYFLSGDYEECLELLIST 747 (794)
T ss_pred c-chHH-----HHHHHcCCHHHHHHHHHhc
Confidence 3 3322 2355678888877777654
No 342
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=90.46 E-value=10 Score=32.21 Aligned_cols=135 Identities=13% Similarity=0.238 Sum_probs=68.4
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 045674 483 ALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKG 562 (650)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 562 (650)
+.++.+.+.++.++...+..++..+.+.|++..-. .++..++-+|.......+- ...+.+..+.++--.|...
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LL--s~~~~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLL--SLGNQYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHH--HhHccChHHHHHHHHHHHH-
Confidence 44455555666677777777777777777655433 3334444445444433221 1122233333332222221
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045674 563 IIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGV 630 (650)
Q Consensus 563 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 630 (650)
-...+..+++++...|++-+|.++.++....+ ..++ ..+..+..+.++...=..+++-..+.
T Consensus 88 --L~~~~~~iievLL~~g~vl~ALr~ar~~~~~~-~~~~---~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 88 --LGTAYEEIIEVLLSKGQVLEALRYARQYHKVD-SVPA---RKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred --hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCcc-cCCH---HHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 11234556667777788888877777653222 1222 33455555566655555555544443
No 343
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=90.44 E-value=0.81 Score=26.47 Aligned_cols=30 Identities=13% Similarity=0.175 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 045674 567 TAFEDMITCLCKTGRIKEACKLADGIVDRE 596 (650)
Q Consensus 567 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 596 (650)
.+|..++.++...|++++|.+.|+++++..
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 467788899999999999999999988764
No 344
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=90.41 E-value=0.61 Score=26.68 Aligned_cols=28 Identities=25% Similarity=0.441 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 045674 568 AFEDMITCLCKTGRIKEACKLADGIVDR 595 (650)
Q Consensus 568 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 595 (650)
++..++.++.+.|++++|.+.|+++++.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3455666666777777777777776654
No 345
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=90.41 E-value=0.71 Score=47.76 Aligned_cols=18 Identities=28% Similarity=0.516 Sum_probs=9.0
Q ss_pred CHHHHHHHHHHHHhcCCh
Q 045674 321 PSHAYNLVIGGLCKVGKC 338 (650)
Q Consensus 321 ~~~~~~~l~~~~~~~g~~ 338 (650)
+..+|..=+..+|+..+.
T Consensus 837 Na~afgF~is~L~kL~dT 854 (1102)
T KOG1924|consen 837 NAQAFGFNISFLCKLRDT 854 (1102)
T ss_pred cchhhccchHHHHhhccc
Confidence 344555555555554443
No 346
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=90.36 E-value=10 Score=33.02 Aligned_cols=76 Identities=13% Similarity=0.061 Sum_probs=53.4
Q ss_pred hcCCHHHHHHHHHHHhhCCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhcCCHHH
Q 045674 544 LSGKVARACKILDELAPKGII-PETAFEDMITCLCKTGRIKEACKLADGIVDRE---REIPGKIRTALINALRKAGNADL 619 (650)
Q Consensus 544 ~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~ 619 (650)
+.|+ ++|.+.|-++...+.. +++....|+..|. ..+.++|+.++.++++.. -.+|+.++..|+..+.+.|+++.
T Consensus 119 r~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 119 RFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred ccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 3344 5566666666655443 7777777776665 556788888888887763 14568888888888888888888
Q ss_pred HH
Q 045674 620 AI 621 (650)
Q Consensus 620 A~ 621 (650)
|.
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 75
No 347
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=90.35 E-value=0.76 Score=28.14 Aligned_cols=28 Identities=25% Similarity=0.368 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045674 602 KIRTALINALRKAGNADLAIKLMHSKIG 629 (650)
Q Consensus 602 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 629 (650)
.+++.++..|...|++++|..+++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3566677777777777777777777665
No 348
>PRK09687 putative lyase; Provisional
Probab=90.05 E-value=17 Score=34.27 Aligned_cols=136 Identities=15% Similarity=0.110 Sum_probs=65.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 045674 461 DSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEH-RNEEALKLWDMMIDKGITPTAASFRALS 539 (650)
Q Consensus 461 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 539 (650)
+..+-...+.++.+.++ +++...+-.+.+. ++...-...+.++...+ +...+...+..++. .++..+-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHH
Confidence 44455555555555554 3444555454442 23333333333333322 12344555544442 33455555555
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 045674 540 IGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINAL 611 (650)
Q Consensus 540 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 611 (650)
+++.+.|+ ..|...+-+..+.+. .....+.++...|.. +|+..+..+.+.. +|..+.....++|
T Consensus 214 ~aLg~~~~-~~av~~Li~~L~~~~----~~~~a~~ALg~ig~~-~a~p~L~~l~~~~--~d~~v~~~a~~a~ 277 (280)
T PRK09687 214 IGLALRKD-KRVLSVLIKELKKGT----VGDLIIEAAGELGDK-TLLPVLDTLLYKF--DDNEIITKAIDKL 277 (280)
T ss_pred HHHHccCC-hhHHHHHHHHHcCCc----hHHHHHHHHHhcCCH-hHHHHHHHHHhhC--CChhHHHHHHHHH
Confidence 66666555 345555555554321 234455566666653 5666666666532 3555444444443
No 349
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=90.02 E-value=21 Score=35.16 Aligned_cols=92 Identities=15% Similarity=0.150 Sum_probs=59.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHC------CCCCCHHHHHHHHH
Q 045674 468 LIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMF-KEHRNEEALKLWDMMIDK------GITPTAASFRALSI 540 (650)
Q Consensus 468 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~------~~~p~~~~~~~l~~ 540 (650)
.+..+.+.|.+..|.++.+-+...++.-|+..-..+|..|+ +.++++--+++.+..... ..-|+-. .+.+-
T Consensus 109 ~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a--~S~aL 186 (360)
T PF04910_consen 109 YIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFA--FSIAL 186 (360)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHH--HHHHH
Confidence 45567788888888888888888766656666666666664 677777777777765541 1123322 23333
Q ss_pred HHHhcCCH---------------HHHHHHHHHHhhC
Q 045674 541 GLCLSGKV---------------ARACKILDELAPK 561 (650)
Q Consensus 541 ~~~~~g~~---------------~~A~~~~~~~~~~ 561 (650)
++...++. ++|.+.+.+++..
T Consensus 187 A~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~ 222 (360)
T PF04910_consen 187 AYFRLEKEESSQSSAQSGRSENSESADEALQKAILR 222 (360)
T ss_pred HHHHhcCccccccccccccccchhHHHHHHHHHHHH
Confidence 44445555 7888888888765
No 350
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=89.91 E-value=0.39 Score=47.06 Aligned_cols=102 Identities=15% Similarity=0.055 Sum_probs=75.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCH
Q 045674 504 INGMFKEHRNEEALKLWDMMIDKGITPTAASF-RALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRI 582 (650)
Q Consensus 504 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 582 (650)
+..+...++++.|..++.++++. .||...| ..-..++.+.+++..|+.=+.++++..|.....|..-+.++...+++
T Consensus 11 an~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH
Confidence 34456778899999999999885 5555444 33346788889999999988888888877777788788888888899
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 045674 583 KEACKLADGIVDREREIPGKIRTALIN 609 (650)
Q Consensus 583 ~~A~~~~~~~~~~~~~~~~~~~~~l~~ 609 (650)
.+|...|+...... |+.......+.
T Consensus 89 ~~A~~~l~~~~~l~--Pnd~~~~r~~~ 113 (476)
T KOG0376|consen 89 KKALLDLEKVKKLA--PNDPDATRKID 113 (476)
T ss_pred HHHHHHHHHhhhcC--cCcHHHHHHHH
Confidence 99999998888663 44443433333
No 351
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=89.80 E-value=4.7 Score=36.11 Aligned_cols=41 Identities=22% Similarity=0.158 Sum_probs=19.4
Q ss_pred HHhcCCHHHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHHhcCC
Q 045674 507 MFKEHRNEEALKLWDMMID----KGITPT--AASFRALSIGLCLSGK 547 (650)
Q Consensus 507 ~~~~~~~~~A~~~~~~~~~----~~~~p~--~~~~~~l~~~~~~~g~ 547 (650)
+.....+++|++.+.-++- .+..+. ...+..++|.|-..|+
T Consensus 87 ~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~ 133 (214)
T PF09986_consen 87 FSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGD 133 (214)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCC
Confidence 4445556666666555441 122222 2233445555555555
No 352
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.75 E-value=0.88 Score=27.82 Aligned_cols=29 Identities=21% Similarity=0.379 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 045674 567 TAFEDMITCLCKTGRIKEACKLADGIVDR 595 (650)
Q Consensus 567 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 595 (650)
.+++.++.+|...|++++|..+++++++.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 45677888888888888888888877653
No 353
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=89.71 E-value=0.67 Score=28.90 Aligned_cols=27 Identities=26% Similarity=0.268 Sum_probs=22.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 045674 606 ALINALRKAGNADLAIKLMHSKIGVGY 632 (650)
Q Consensus 606 ~l~~~~~~~g~~~~A~~~~~~~~~~~~ 632 (650)
.++.+|...|+.+.|+++++++++.|-
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~~ 30 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEGD 30 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCC
Confidence 477888889999999999998886544
No 354
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=89.62 E-value=9.2 Score=34.27 Aligned_cols=30 Identities=23% Similarity=0.191 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 045674 603 IRTALINALRKAGNADLAIKLMHSKIGVGY 632 (650)
Q Consensus 603 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 632 (650)
+...++....+.|++++|.+++.+++..+-
T Consensus 167 l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 167 LLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 334455555566666666666666655443
No 355
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=88.84 E-value=9.1 Score=35.05 Aligned_cols=34 Identities=21% Similarity=0.364 Sum_probs=21.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 045674 467 VLIDALAKCGKLDEALALFKRMEDEGCDQTVYTY 500 (650)
Q Consensus 467 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 500 (650)
.+++-..+.+++++|+..+.++...|+..+..+.
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~ 41 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTL 41 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhh
Confidence 3445556667777777777777777766555443
No 356
>PRK12798 chemotaxis protein; Reviewed
Probab=88.69 E-value=26 Score=34.48 Aligned_cols=192 Identities=13% Similarity=0.051 Sum_probs=114.5
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCH
Q 045674 439 KAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDAL-AKCGKLDEALALFKRMEDEGCDQTV----YTYTILINGMFKEHRN 513 (650)
Q Consensus 439 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~ 513 (650)
-.|+.+++.+.+..+.....++....+..|+.+- ....+...|+++|+...-. .|.. ..+..-+......|+.
T Consensus 124 ~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~ 201 (421)
T PRK12798 124 LSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDA 201 (421)
T ss_pred HcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcH
Confidence 4688888988888887776677777777777653 3456788899999887654 2332 2333334455678888
Q ss_pred HHHHHHHHHHHHC-CCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHhh-CCCC-cHHHHHHHHHHHHHcCCHHHHHHHH
Q 045674 514 EEALKLWDMMIDK-GITPTAASF-RALSIGLCLSGKVARACKILDELAP-KGII-PETAFEDMITCLCKTGRIKEACKLA 589 (650)
Q Consensus 514 ~~A~~~~~~~~~~-~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~ 589 (650)
+++..+-...... ...|-..-| ..+..++.+.++-..-.. +..++. ..+. -..+|..++..-.-.|+.+-|...-
T Consensus 202 ~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~-l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As 280 (421)
T PRK12798 202 DKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDAR-LVEILSFMDPERQRELYLRIARAALIDGKTELARFAS 280 (421)
T ss_pred HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHH-HHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 8877666655532 222322222 223333444332222222 344433 3343 5678888888888899999998888
Q ss_pred HHHHHcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 045674 590 DGIVDREREIPG---KIRTALINALRKAGNADLAIKLMHSKIGVGYD 633 (650)
Q Consensus 590 ~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 633 (650)
++++......+. .....-+-+-.-..++++|.+.+..+-.....
T Consensus 281 ~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L~ 327 (421)
T PRK12798 281 ERALKLADPDSADAARARLYRGAALVASDDAESALEELSQIDRDKLS 327 (421)
T ss_pred HHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcCChhhCC
Confidence 888876422221 11111122223456778888777776665554
No 357
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=88.61 E-value=26 Score=34.47 Aligned_cols=48 Identities=10% Similarity=0.027 Sum_probs=33.0
Q ss_pred HHHHHhcCCCchhhhHHHHHHhhcCCCChHHHHHHHHhccCCCChhHH
Q 045674 83 QILNLLDGSSDMEANLDSFCRKFLIKLSPNFVSFVLRNHDVSKRPNVG 130 (650)
Q Consensus 83 ~~~~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a 130 (650)
.|....-+.++...+...+.+--.....|-++.++...+...++-+.-
T Consensus 55 sii~eyfstgdv~vaa~dl~elg~seyhpyfvkrlvsmamdrhdkeke 102 (645)
T KOG0403|consen 55 SIIDEYFSTGDVVVAASDLKELGSSEYHPYFVKRLVSMAMDRHDKEKE 102 (645)
T ss_pred HHHHHHccCCCchhhHHHHHHhccccccHHHHHHHHHHHhhccchHHH
Confidence 344444468888888877776555667788888888877766655443
No 358
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=88.58 E-value=20 Score=33.00 Aligned_cols=32 Identities=19% Similarity=0.350 Sum_probs=18.9
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCCCCCCHHH
Q 045674 258 MIKGYCKVGKTQKAMEKFRAMEARNVQPDKIT 289 (650)
Q Consensus 258 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 289 (650)
+.+-..+.+++++|+..+.++...|+..+..+
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~ 40 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKT 40 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhh
Confidence 34445555666666666666666665555443
No 359
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.53 E-value=19 Score=32.75 Aligned_cols=156 Identities=11% Similarity=0.055 Sum_probs=80.8
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CC--CCCHHHHHHHHHHHHHcC
Q 045674 405 NERLEEAMQYFEFCRANGVAVNA---MFYSSLIDGLGKAGRVDEAEELFEEMVEK---GC--PRDSYCYNVLIDALAKCG 476 (650)
Q Consensus 405 ~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~--~~~~~~~~~l~~~~~~~g 476 (650)
....++|+.-|.+..+....... .....++..+.+.+++++..+.+.+++.- .+ .-+....+.++.......
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 44677888888777765433232 33445667777788888877777776541 00 123345556665555555
Q ss_pred CHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCC------CCHHHHHHHHH
Q 045674 477 KLDEALALFKRMEDE-----GCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDK-----GIT------PTAASFRALSI 540 (650)
Q Consensus 477 ~~~~A~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~------p~~~~~~~l~~ 540 (650)
+.+-...+++.-++. +-..-..|-..|...|...+.+.+..++++++... |-. --...|..-++
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 555555555443221 00111123344556666666666666666665431 100 01123444445
Q ss_pred HHHhcCCHHHHHHHHHHHhh
Q 045674 541 GLCLSGKVARACKILDELAP 560 (650)
Q Consensus 541 ~~~~~g~~~~A~~~~~~~~~ 560 (650)
.|-.+.+-.+-..+|++++.
T Consensus 200 mYT~qKnNKkLK~lYeqalh 219 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALH 219 (440)
T ss_pred hhhhhcccHHHHHHHHHHHH
Confidence 55555555555555555553
No 360
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.13 E-value=0.69 Score=43.24 Aligned_cols=91 Identities=16% Similarity=0.139 Sum_probs=55.0
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 045674 472 LAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARA 551 (650)
Q Consensus 472 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 551 (650)
....|.++.|++.|...+...+ +....|..-..++.+.+++..|++=+...++.+.. +..-|-.-..+....|++++|
T Consensus 124 Aln~G~~~~ai~~~t~ai~lnp-~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D-sa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELNP-PLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD-SAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred HhcCcchhhhhcccccccccCC-chhhhcccccceeeeccCCchhhhhhhhhhccCcc-cccccchhhHHHHHhhchHHH
Confidence 3446677777777777776643 35555555566666777777777766666654332 222333334444556777777
Q ss_pred HHHHHHHhhCCCC
Q 045674 552 CKILDELAPKGII 564 (650)
Q Consensus 552 ~~~~~~~~~~~~~ 564 (650)
...+..+.+.+.+
T Consensus 202 a~dl~~a~kld~d 214 (377)
T KOG1308|consen 202 AHDLALACKLDYD 214 (377)
T ss_pred HHHHHHHHhcccc
Confidence 7777777766544
No 361
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=88.02 E-value=7.4 Score=29.09 Aligned_cols=62 Identities=19% Similarity=0.194 Sum_probs=30.2
Q ss_pred HHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCC
Q 045674 555 LDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREI-PGKIRTALINALRKAGN 616 (650)
Q Consensus 555 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 616 (650)
+++.+..+|.|......++..+...|++++|++.+-.+++.+... +...-..++..+...|.
T Consensus 11 l~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 11 LEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 344444455566666666666666666666666666665543111 23344444444444444
No 362
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=87.79 E-value=40 Score=35.66 Aligned_cols=55 Identities=20% Similarity=0.176 Sum_probs=35.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045674 571 DMITCLCKTGRIKEACKLADGIVDREREIPGK----IRTALINALRKAGNADLAIKLMHSKI 628 (650)
Q Consensus 571 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~ 628 (650)
.++-++..-|+.++|..+++++.... |+. -...++.+|+-.|+-...++++.-+.
T Consensus 506 ~vGiaL~~ygrqe~Ad~lI~el~~dk---dpilR~~Gm~t~alAy~GTgnnkair~lLh~aV 564 (929)
T KOG2062|consen 506 AVGIALVVYGRQEDADPLIKELLRDK---DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAV 564 (929)
T ss_pred HHhHHHHHhhhhhhhHHHHHHHhcCC---chhhhhhhHHHHHHHHhccCchhhHHHhhcccc
Confidence 34556667788888888888887543 222 22346667777777777666666533
No 363
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=87.02 E-value=1.5 Score=43.09 Aligned_cols=103 Identities=15% Similarity=0.034 Sum_probs=71.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 045674 468 LIDALAKCGKLDEALALFKRMEDEGCDQTVYTY-TILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSG 546 (650)
Q Consensus 468 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 546 (650)
-+..+...+.++.|..++.++++. .||...| ..=..++.+.+++..|+.=+.++++..+. -...|..=+.++.+.+
T Consensus 10 ean~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~-~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELDPT-YIKAYVRRGTAVMALG 86 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcCch-hhheeeeccHHHHhHH
Confidence 345566778899999999999886 4444333 33346778888999998888888876432 2234444456667778
Q ss_pred CHHHHHHHHHHHhhCCCCcHHHHHHHH
Q 045674 547 KVARACKILDELAPKGIIPETAFEDMI 573 (650)
Q Consensus 547 ~~~~A~~~~~~~~~~~~~~~~~~~~l~ 573 (650)
.+.+|...|+......|.++.+...+-
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~~~r~~~ 113 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPDATRKID 113 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHHHHHHHH
Confidence 888888888888887777666555443
No 364
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=87.02 E-value=84 Score=38.50 Aligned_cols=318 Identities=13% Similarity=0.106 Sum_probs=170.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh
Q 045674 292 TLIQACYLEGDFDSCLSLYHEMDEKGI--EIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAK 369 (650)
Q Consensus 292 ~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 369 (650)
.+..+-.+.+.+.+|...++.-..... ......+..+...|...+++|....+...... .|+ ....+.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s---l~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS---LYQQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc---HHHHHHHHHh
Confidence 455566777888888888887411111 11233444555588888888888777664111 122 2235556677
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 045674 370 LGSMNEAINIFERMKYEGVEPD-EVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEE 448 (650)
Q Consensus 370 ~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 448 (650)
.|++..|...|+++.+. .|+ ..+++.++......|.++..+...+-......+-....++.=+.+--+.+++|....
T Consensus 1462 ~g~~~da~~Cye~~~q~--~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQK--DPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred hccHHHHHHHHHHhhcC--CCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 89999999999999876 444 567777777777778888777766655444222112222333444466777777666
Q ss_pred HHHHHHHcCCCCCHHHHHH--HHHHHHHcCCHH--HHHHHHHHHHHc--------CCCC-CHHHHHHHHHHHHhcCCHHH
Q 045674 449 LFEEMVEKGCPRDSYCYNV--LIDALAKCGKLD--EALALFKRMEDE--------GCDQ-TVYTYTILINGMFKEHRNEE 515 (650)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~--~A~~~~~~~~~~--------~~~~-~~~~~~~l~~~~~~~~~~~~ 515 (650)
.+. . .+..+|.. ++..+.+..+-+ .-.+..+.+.+. +..- -...|..++....-. +.+.
T Consensus 1540 ~l~---~----~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~-el~~ 1611 (2382)
T KOG0890|consen 1540 YLS---D----RNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL-ELEN 1611 (2382)
T ss_pred hhh---c----ccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH-HHHH
Confidence 554 1 12222222 233322222111 111222222221 1110 112233333322111 1111
Q ss_pred HHHHHHHHHHCCCCCCHHH-HHHHHHH--HHhcCCHHHHHHHH---HHHh-h---C-CCC--cHHHHHHHHHHHHHcCCH
Q 045674 516 ALKLWDMMIDKGITPTAAS-FRALSIG--LCLSGKVARACKIL---DELA-P---K-GII--PETAFEDMITCLCKTGRI 582 (650)
Q Consensus 516 A~~~~~~~~~~~~~p~~~~-~~~l~~~--~~~~g~~~~A~~~~---~~~~-~---~-~~~--~~~~~~~l~~~~~~~g~~ 582 (650)
-.+.+. +..++..+ .+..-|. +.+.+..-.+.+.+ ++.. . . +.. -.+.|...++.....|++
T Consensus 1612 ~~~~l~-----~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~ 1686 (2382)
T KOG0890|consen 1612 SIEELK-----KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHL 1686 (2382)
T ss_pred HHHHhh-----ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccH
Confidence 111111 12222111 1111111 11222222232222 2211 1 1 122 568899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 045674 583 KEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYD 633 (650)
Q Consensus 583 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 633 (650)
+.|...+-++.+.. -+.++.-.+..++..|+-..|+.++++.+++...
T Consensus 1687 q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1687 QRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSKNFP 1734 (2382)
T ss_pred HHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence 99999988888765 3455667788899999999999999999977543
No 365
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=86.94 E-value=10 Score=33.14 Aligned_cols=71 Identities=14% Similarity=0.055 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC----CcHHHHHHHHHHHHHcCCHHHH
Q 045674 514 EEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGI----IPETAFEDMITCLCKTGRIKEA 585 (650)
Q Consensus 514 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A 585 (650)
++|.+.|-.+...+.--++.....++..|. ..+.+++..++.++++... .+++++..|+..+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 344555544444333334444444443333 4555666666655554321 1556666666666666666655
No 366
>PRK10941 hypothetical protein; Provisional
Probab=86.88 E-value=5 Score=37.32 Aligned_cols=59 Identities=12% Similarity=-0.042 Sum_probs=31.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 045674 537 ALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDR 595 (650)
Q Consensus 537 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 595 (650)
.+-.+|.+.++++.|++..+.++...|.++.-+..-|-+|.+.|.+..|..-++..++.
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 33344455555555555555555555555555555555555555555555555555443
No 367
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=86.74 E-value=1.4 Score=24.49 Aligned_cols=26 Identities=27% Similarity=0.231 Sum_probs=12.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045674 604 RTALINALRKAGNADLAIKLMHSKIG 629 (650)
Q Consensus 604 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 629 (650)
+..++..+...|++++|...+++.++
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 34444445555555555555555444
No 368
>PRK11619 lytic murein transglycosylase; Provisional
Probab=86.70 E-value=50 Score=35.55 Aligned_cols=206 Identities=10% Similarity=0.008 Sum_probs=118.2
Q ss_pred cCCHHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 045674 405 NERLEEAMQYFEFCRANG-VAVN--AMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEA 481 (650)
Q Consensus 405 ~g~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 481 (650)
..+.+.|...+....... .... ..+...++......+..++|...+....... .+.......+..-.+.++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHH
Confidence 455688888888764443 2221 2233444433344433566777776654432 3445555556666688999998
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH--h
Q 045674 482 LALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDEL--A 559 (650)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~ 559 (650)
...+..|....-. ...-.--++.++...|+.++|..+|+++... .+ .|..++. .+.|..-. ... ... .
T Consensus 332 ~~~i~~L~~~~~~-~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~---~~--fYG~LAa--~~Lg~~~~-~~~-~~~~~~ 401 (644)
T PRK11619 332 NTWLARLPMEAKE-KDEWRYWQADLLLEQGRKAEAEEILRQLMQQ---RG--FYPMVAA--QRLGEEYP-LKI-DKAPKP 401 (644)
T ss_pred HHHHHhcCHhhcc-CHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC---CC--cHHHHHH--HHcCCCCC-CCC-CCCCch
Confidence 8888887553222 3333344667777789999999999997531 12 2322221 12232100 000 000 0
Q ss_pred hCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 045674 560 PKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHS 626 (650)
Q Consensus 560 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 626 (650)
...... .-...-+..+...|+..+|...|..+... .+......++....+.|.++.++....+
T Consensus 402 ~~~~~~-~~~~~ra~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~~~ 464 (644)
T PRK11619 402 DSALTQ-GPEMARVRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQATIA 464 (644)
T ss_pred hhhhcc-ChHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHHhh
Confidence 000000 11233456678889999999999988864 3445566777777788888888766654
No 369
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=86.47 E-value=1.1 Score=24.08 Aligned_cols=15 Identities=27% Similarity=0.257 Sum_probs=5.8
Q ss_pred HHHHHHcCCHHHHHH
Q 045674 573 ITCLCKTGRIKEACK 587 (650)
Q Consensus 573 ~~~~~~~g~~~~A~~ 587 (650)
+.++...|++++|..
T Consensus 8 a~~~~~~G~~~eA~~ 22 (26)
T PF07721_consen 8 ARALLAQGDPDEAER 22 (26)
T ss_pred HHHHHHcCCHHHHHH
Confidence 333333333333333
No 370
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=86.31 E-value=24 Score=31.58 Aligned_cols=80 Identities=16% Similarity=0.184 Sum_probs=44.0
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-C------------CCcHHHHHHHHHHHHHcCCHHHH
Q 045674 519 LWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPK-G------------IIPETAFEDMITCLCKTGRIKEA 585 (650)
Q Consensus 519 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~------------~~~~~~~~~l~~~~~~~g~~~~A 585 (650)
+.+-....++.-+..-+..++ +-..|+..+|+..++.-..- | .+.+.....++. .|..+++++|
T Consensus 181 l~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~-~~~~~~~~~A 257 (333)
T KOG0991|consen 181 LLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQ-ACLKRNIDEA 257 (333)
T ss_pred HHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHH-HHHhccHHHH
Confidence 333333344444444444443 44567777777777665531 1 112333333333 3456678888
Q ss_pred HHHHHHHHHcCCCCCH
Q 045674 586 CKLADGIVDREREIPG 601 (650)
Q Consensus 586 ~~~~~~~~~~~~~~~~ 601 (650)
.+++.++.+.|+.|..
T Consensus 258 ~~il~~lw~lgysp~D 273 (333)
T KOG0991|consen 258 LKILAELWKLGYSPED 273 (333)
T ss_pred HHHHHHHHHcCCCHHH
Confidence 8888888888866543
No 371
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=86.30 E-value=9.4 Score=28.53 Aligned_cols=62 Identities=16% Similarity=0.089 Sum_probs=39.2
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--cHHHHHHHHHHHHHcCCHH
Q 045674 521 DMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGII--PETAFEDMITCLCKTGRIK 583 (650)
Q Consensus 521 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~ 583 (650)
+..++.++. |......++..+...|++++|++.+-.++..++. +...-..++.++...|.-+
T Consensus 12 ~~~~a~~P~-D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 12 EAALAANPD-DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp HHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred HHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 333444344 6677778888888888888888888888877654 5556666666666666533
No 372
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=86.23 E-value=2.2 Score=27.97 Aligned_cols=28 Identities=18% Similarity=0.254 Sum_probs=16.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 045674 569 FEDMITCLCKTGRIKEACKLADGIVDRE 596 (650)
Q Consensus 569 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 596 (650)
+..++.++.+.|++++|.++.+.+++..
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~e 31 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIE 31 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 3445566666666666666666666653
No 373
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=85.92 E-value=1.3 Score=23.80 Aligned_cols=24 Identities=38% Similarity=0.455 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHH
Q 045674 603 IRTALINALRKAGNADLAIKLMHS 626 (650)
Q Consensus 603 ~~~~l~~~~~~~g~~~~A~~~~~~ 626 (650)
....++.++...|++++|..++++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhC
Confidence 456789999999999999998763
No 374
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.84 E-value=61 Score=35.78 Aligned_cols=40 Identities=0% Similarity=-0.110 Sum_probs=26.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 045674 295 QACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCK 334 (650)
Q Consensus 295 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 334 (650)
-.|+.....+-+..+++.+....-..+....+.++..|++
T Consensus 599 l~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 599 LNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred HHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 3455666677777777777766555566666666666654
No 375
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=85.51 E-value=31 Score=32.03 Aligned_cols=61 Identities=13% Similarity=0.125 Sum_probs=53.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 045674 534 SFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVD 594 (650)
Q Consensus 534 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 594 (650)
++......|..+|.+.+|..+.++++..++-+...+..++..|...|+--.|.+-|+++.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 3455667889999999999999999999988999999999999999998888888877653
No 376
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=85.26 E-value=7.1 Score=29.16 Aligned_cols=46 Identities=15% Similarity=0.142 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 045674 515 EALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAP 560 (650)
Q Consensus 515 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 560 (650)
++.+-++.+....+.|++....+.+++|.+.+++.-|.++++.+..
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4444455555555666666666666666666677667766666653
No 377
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.81 E-value=15 Score=34.25 Aligned_cols=98 Identities=14% Similarity=0.182 Sum_probs=54.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 045674 426 NAMFYSSLIDGLGKAGRVDEAEELFEEMVEKG---CPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTI 502 (650)
Q Consensus 426 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 502 (650)
...+...++..-....+++.++..+-.+...- ..++.. ....++.+ -.-+.++++.++..=+..|+-||..+++.
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf~~c~ 140 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFTFCL 140 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHHH-HccChHHHHHHHhCcchhccccchhhHHH
Confidence 33344444444444566666666665555421 011111 11222222 23455667777766677777777777777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 045674 503 LINGMFKEHRNEEALKLWDMMID 525 (650)
Q Consensus 503 l~~~~~~~~~~~~A~~~~~~~~~ 525 (650)
++..+.+.+++.+|..+...|..
T Consensus 141 l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 141 LMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred HHHHHHhcccHHHHHHHHHHHHH
Confidence 77777777777777776666654
No 378
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=84.41 E-value=8.5 Score=36.17 Aligned_cols=99 Identities=18% Similarity=0.154 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHH
Q 045674 497 VYTYTILINGMFKEHRNEEALKLWDMMIDKGI-TP--TAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMI 573 (650)
Q Consensus 497 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 573 (650)
...|--=+.-|.+.+++..|...|.+.++... .| +...|+.-+.+-...|++..|+.=-.++...+|.....+..=+
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA 160 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence 44555667778888889999999988885422 23 3455666666666778898888888888888888888888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHc
Q 045674 574 TCLCKTGRIKEACKLADGIVDR 595 (650)
Q Consensus 574 ~~~~~~g~~~~A~~~~~~~~~~ 595 (650)
.|+....++++|....+..++.
T Consensus 161 kc~~eLe~~~~a~nw~ee~~~~ 182 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCEEGLQI 182 (390)
T ss_pred HHHHHHHHHHHHHHHHhhhhhh
Confidence 8888888999999888888654
No 379
>PRK09687 putative lyase; Provisional
Probab=84.37 E-value=37 Score=32.03 Aligned_cols=23 Identities=13% Similarity=0.315 Sum_probs=10.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Q 045674 432 SLIDGLGKAGRVDEAEELFEEMVE 455 (650)
Q Consensus 432 ~l~~~~~~~~~~~~A~~~~~~~~~ 455 (650)
..+.++...|+. +|...+..+..
T Consensus 240 ~a~~ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 240 LIIEAAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred HHHHHHHhcCCH-hHHHHHHHHHh
Confidence 344444444542 34555554444
No 380
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=84.17 E-value=8.3 Score=33.89 Aligned_cols=75 Identities=12% Similarity=0.067 Sum_probs=57.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHH
Q 045674 536 RALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDRER--EIPGKIRTALINA 610 (650)
Q Consensus 536 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~ 610 (650)
...+..+.+.+..++|+...+.-++..|.+...-..+.+.||-.|+|++|..-++-+-+... .+....|..++.+
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 34455677889999999999999998888888888899999999999999988888776531 1223455555543
No 381
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.08 E-value=21 Score=36.69 Aligned_cols=150 Identities=17% Similarity=0.142 Sum_probs=84.3
Q ss_pred hcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 045674 334 KVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQ 413 (650)
Q Consensus 334 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 413 (650)
-.|+++.|..++..+.+ ...+.++..+.+.|-.++|+++ .+|.... .....+.|+++.|.+
T Consensus 598 mrrd~~~a~~vLp~I~k-------~~rt~va~Fle~~g~~e~AL~~---------s~D~d~r---Felal~lgrl~iA~~ 658 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPK-------EIRTKVAHFLESQGMKEQALEL---------STDPDQR---FELALKLGRLDIAFD 658 (794)
T ss_pred hhccccccccccccCch-------hhhhhHHhHhhhccchHhhhhc---------CCChhhh---hhhhhhcCcHHHHHH
Confidence 34666666655443331 2233455556666666666653 2222211 122345677777766
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 045674 414 YFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGC 493 (650)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 493 (650)
+..+.. +..-|..|.++..+.+++..|.+.|..... |..|+-.+...|+-+....+-....+.|.
T Consensus 659 la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~ 723 (794)
T KOG0276|consen 659 LAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK 723 (794)
T ss_pred HHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc
Confidence 654432 445577777777777777777777766543 34455556666766655555555555543
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 045674 494 DQTVYTYTILINGMFKEHRNEEALKLWDMM 523 (650)
Q Consensus 494 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 523 (650)
. |. -..+|...|+++++.+++.+-
T Consensus 724 ~-N~-----AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 724 N-NL-----AFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred c-ch-----HHHHHHHcCCHHHHHHHHHhc
Confidence 2 22 223456677777777776554
No 382
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=83.70 E-value=2.4 Score=23.38 Aligned_cols=28 Identities=18% Similarity=0.196 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 045674 568 AFEDMITCLCKTGRIKEACKLADGIVDR 595 (650)
Q Consensus 568 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 595 (650)
.+..++.++...|++++|...++++++.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 4566677777777777777777776654
No 383
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=82.99 E-value=12 Score=28.09 Aligned_cols=60 Identities=8% Similarity=0.164 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 045674 165 RVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMN 225 (650)
Q Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 225 (650)
++++.+..+...+..|++.+..+.++++.+.+++..|+.+|+-++.. +..+...|..++.
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lq 84 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHH
Confidence 45666666666666777777777777777777777777777766643 1223445555553
No 384
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=82.77 E-value=44 Score=31.60 Aligned_cols=133 Identities=13% Similarity=0.095 Sum_probs=68.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCcHH
Q 045674 493 CDQTVYTYTILINGMFKEHRNEEALKLWDMMIDK-GITPTAASFRALSIGLCLSGKVARACKILDELAPK----GIIPET 567 (650)
Q Consensus 493 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~ 567 (650)
+..|...++.|..+ ...+.++--+..+++.+. |-.--...+...+..|++.|+.+.|.+.+.+..+. |..-..
T Consensus 66 i~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDV 143 (393)
T KOG0687|consen 66 IKLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDV 143 (393)
T ss_pred eeccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhh
Confidence 34455555554432 122333333333444432 21112345667777888999999998888776654 333112
Q ss_pred HH--HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045674 568 AF--EDMITCLCKTGRIKEACKLADGIVDREREIPG----KIRTALINALRKAGNADLAIKLMHSKIG 629 (650)
Q Consensus 568 ~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 629 (650)
++ ..++-.|....-..+-++..+.+.+.|-.-+. .+|..+ -|....++.+|-.+|-..+.
T Consensus 144 vf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gl--y~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 144 VFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGL--YCMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHH--HHHHHHhHHHHHHHHHHHcc
Confidence 22 22444444444455555555556665533222 222222 24556788888888776654
No 385
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=82.70 E-value=12 Score=35.20 Aligned_cols=98 Identities=14% Similarity=0.034 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 045674 463 YCYNVLIDALAKCGKLDEALALFKRMEDEGC---DQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALS 539 (650)
Q Consensus 463 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 539 (650)
..|---++-|.+..++..|...|.+-++..+ ..+.+.|+.-..+-...|++..|+.=...+....+. ....+..-+
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~-h~Ka~~R~A 160 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPT-HLKAYIRGA 160 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcc-hhhhhhhhh
Confidence 4566667788889999999999998877543 235566777676777889999998888888775443 344555556
Q ss_pred HHHHhcCCHHHHHHHHHHHhhC
Q 045674 540 IGLCLSGKVARACKILDELAPK 561 (650)
Q Consensus 540 ~~~~~~g~~~~A~~~~~~~~~~ 561 (650)
.++....++++|..+.++....
T Consensus 161 kc~~eLe~~~~a~nw~ee~~~~ 182 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCEEGLQI 182 (390)
T ss_pred HHHHHHHHHHHHHHHHhhhhhh
Confidence 6777788888888888777543
No 386
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=82.69 E-value=19 Score=27.36 Aligned_cols=76 Identities=9% Similarity=0.118 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhcCChh--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 045674 149 CYISLIDCLALCGDVD--RVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMN 225 (650)
Q Consensus 149 ~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 225 (650)
.|..--..+....+.| +.++-+..+...+..|++.+..+.+.++.+.+++..|+.+|+-++.. +......|..++.
T Consensus 10 eF~ary~~~F~~~~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 10 EFDARYEKYFNRPDIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHHH-TT--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred HHHHHHHHHhCCccccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence 3333333444433333 56667777777777788888888888888888888888888877765 2222226666554
No 387
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.64 E-value=36 Score=30.53 Aligned_cols=57 Identities=5% Similarity=0.088 Sum_probs=32.1
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHH------HHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 045674 508 FKEHRNEEALKLWDMMIDKGITPTAASF------RALSIGLCLSGKVARACKILDELAPKGII 564 (650)
Q Consensus 508 ~~~~~~~~A~~~~~~~~~~~~~p~~~~~------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 564 (650)
...+++.+|+.+|++.....+..+.--| ...+-++.-..+.-.+...+++..+..|.
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPA 227 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCc
Confidence 3567788888888887765444222222 11122222335665666677777777665
No 388
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=82.27 E-value=21 Score=32.82 Aligned_cols=87 Identities=14% Similarity=0.085 Sum_probs=42.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----
Q 045674 399 ISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAK---- 474 (650)
Q Consensus 399 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 474 (650)
|.+++..|+|.+++.+.-+--+.--+....+...-|-.|.+.++...+.++-...+..--..+...|..++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 4455556666665555443333222223334444455566666666666666555553212222334444444433
Q ss_pred -cCCHHHHHHHH
Q 045674 475 -CGKLDEALALF 485 (650)
Q Consensus 475 -~g~~~~A~~~~ 485 (650)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 46666666555
No 389
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=82.20 E-value=2.6 Score=38.92 Aligned_cols=78 Identities=8% Similarity=-0.043 Sum_probs=52.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 045674 531 TAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFED-MITCLCKTGRIKEACKLADGIVDREREIPGKIRTALIN 609 (650)
Q Consensus 531 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 609 (650)
|...|...+....+.|.+.+.-.++.++....|.+.+.|.. -..-+...++++.+..++.+.++.+ +.++.+|.....
T Consensus 106 D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N-~~~p~iw~eyfr 184 (435)
T COG5191 106 DPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMN-SRSPRIWIEYFR 184 (435)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccC-CCCchHHHHHHH
Confidence 55555555555556667777777777777777777776654 4455667777888888888877776 556666655443
No 390
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.18 E-value=81 Score=34.33 Aligned_cols=97 Identities=12% Similarity=0.078 Sum_probs=62.0
Q ss_pred HhcCCHHHHHHHHHHHhhCCCC-------cHHHHHHHHHHHH---------------HcCCHHHHHHHHHHHHHcCCCCC
Q 045674 543 CLSGKVARACKILDELAPKGII-------PETAFEDMITCLC---------------KTGRIKEACKLADGIVDREREIP 600 (650)
Q Consensus 543 ~~~g~~~~A~~~~~~~~~~~~~-------~~~~~~~l~~~~~---------------~~g~~~~A~~~~~~~~~~~~~~~ 600 (650)
...|++.+|.+.|..++-.-+. +..-...++..++ ..+..+++.++..-.-..+..|-
T Consensus 1002 tt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ElAaYFt~~~Lqp~ 1081 (1202)
T KOG0292|consen 1002 TTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQLELAAYFTHCKLQPM 1081 (1202)
T ss_pred hccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHHHHHHHhhcCCCCcH
Confidence 4678999999999887743221 2222223333321 23445666555544444455554
Q ss_pred HH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCChhhhh
Q 045674 601 GK--IRTALINALRKAGNADLAIKLMHSKIGVGYDRMGSIK 639 (650)
Q Consensus 601 ~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 639 (650)
.. +....++.+.+.+++..|-.+..++++.++.|+....
T Consensus 1082 H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~q 1122 (1202)
T KOG0292|consen 1082 HRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAEQ 1122 (1202)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHHH
Confidence 43 4456678899999999999999999999998765543
No 391
>PRK10941 hypothetical protein; Provisional
Probab=82.12 E-value=13 Score=34.72 Aligned_cols=61 Identities=5% Similarity=-0.038 Sum_probs=32.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 045674 572 MITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYD 633 (650)
Q Consensus 572 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 633 (650)
+-.+|.+.++++.|.++.+.++... |.++.-+.--+-.|.+.|.+..|..-++..++..++
T Consensus 187 LK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~ 247 (269)
T PRK10941 187 LKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPE 247 (269)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC
Confidence 4444555555555555555555554 444444444455555555555555555555555544
No 392
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=81.62 E-value=20 Score=27.03 Aligned_cols=80 Identities=15% Similarity=0.116 Sum_probs=50.7
Q ss_pred CCChhHHHHHHHHHHHcCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHH
Q 045674 124 SKRPNVGLRLFTWAARQKKYSHNLE-CYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELL 202 (650)
Q Consensus 124 ~~~~~~al~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 202 (650)
....++|..+.+|....+. ..+ +-..-+..+...|++++|..+.+.+ ..||...|.+|... +.|..+.+.
T Consensus 18 ~HcHqEA~tIAdwL~~~~~---~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce~--rlGl~s~l~ 88 (115)
T TIGR02508 18 HHCHQEANTIADWLHLKGE---SEEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCEW--RLGLGSALE 88 (115)
T ss_pred chHHHHHHHHHHHHhcCCc---hHHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHHH--hhccHHHHH
Confidence 3457788888888876532 122 2223345567778888887776655 25677777666543 566666777
Q ss_pred HHHHHHHHCC
Q 045674 203 WVWRSMKENG 212 (650)
Q Consensus 203 ~~~~~~~~~~ 212 (650)
..+.++...|
T Consensus 89 ~rl~rla~sg 98 (115)
T TIGR02508 89 SRLNRLAASG 98 (115)
T ss_pred HHHHHHHhCC
Confidence 7777776664
No 393
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=80.89 E-value=25 Score=32.43 Aligned_cols=87 Identities=11% Similarity=0.001 Sum_probs=51.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-cHHHHHHHH-----HHH
Q 045674 503 LINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGII-PETAFEDMI-----TCL 576 (650)
Q Consensus 503 l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~-----~~~ 576 (650)
=|.+++..+++.+++...-+--+.--+-...++..-+-.|.+.|....+.++-..-....-. ...-|..++ +++
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHH
Confidence 36777888888887765444332111112334444455678888888877777766643111 222254444 444
Q ss_pred HHcCCHHHHHHHH
Q 045674 577 CKTGRIKEACKLA 589 (650)
Q Consensus 577 ~~~g~~~~A~~~~ 589 (650)
.-.|.+++|+++.
T Consensus 169 lPLG~~~eAeelv 181 (309)
T PF07163_consen 169 LPLGHFSEAEELV 181 (309)
T ss_pred hccccHHHHHHHH
Confidence 5578888888887
No 394
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=80.44 E-value=11 Score=26.99 Aligned_cols=48 Identities=10% Similarity=0.081 Sum_probs=24.4
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHH
Q 045674 578 KTGRIKEACKLADGIVDREREIPG--KIRTALINALRKAGNADLAIKLMH 625 (650)
Q Consensus 578 ~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~ 625 (650)
...+.++|+..|+++++....+.. .++-.++.+|...|++.+++++..
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~ 67 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFAL 67 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666655322111 133344555666666666555543
No 395
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=80.38 E-value=5.9 Score=25.99 Aligned_cols=32 Identities=22% Similarity=0.131 Sum_probs=20.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHH
Q 045674 536 RALSIGLCLSGKVARACKILDELAPKGIIPET 567 (650)
Q Consensus 536 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 567 (650)
..++-++.+.|++++|.++.+.+++..|.+..
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence 34555667777777777777777777666443
No 396
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=79.70 E-value=66 Score=31.71 Aligned_cols=159 Identities=11% Similarity=-0.026 Sum_probs=91.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH---HhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 045674 459 PRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGM---FKEHRNEEALKLWDMMIDKGITPTAASF 535 (650)
Q Consensus 459 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~A~~~~~~~~~~~~~p~~~~~ 535 (650)
|-.+.++..+...+.++|+.+.|.+++++++-.- ..++......+ ...|.. + +.....-|...|
T Consensus 37 PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~----e~~~~~~F~~~~~~~~~g~~--------r-L~~~~~eNR~ff 103 (360)
T PF04910_consen 37 PYHIDTLLQLSEVYRQQGDHAQANDLLERALFAF----ERAFHPSFSPFRSNLTSGNC--------R-LDYRRPENRQFF 103 (360)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH----HHHHHHHhhhhhcccccCcc--------c-cCCccccchHHH
Confidence 6677778888888888888888888887765320 00000000000 001110 0 001111144444
Q ss_pred HH---HHHHHHhcCCHHHHHHHHHHHhhCCCC-cHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCC----CHHHHHH
Q 045674 536 RA---LSIGLCLSGKVARACKILDELAPKGII-PETAFEDMITCL-CKTGRIKEACKLADGIVDREREI----PGKIRTA 606 (650)
Q Consensus 536 ~~---l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~ 606 (650)
.. .+..+.+.|.+..|.++.+-+...+|. |+-....+++.| .+.++++--+++++......... -+.....
T Consensus 104 lal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S 183 (360)
T PF04910_consen 104 LALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFS 183 (360)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHH
Confidence 33 345567888888888888888888887 665555555555 46677877788777765421001 0122234
Q ss_pred HHHHHHhcCCH---------------HHHHHHHHHHHHC
Q 045674 607 LINALRKAGNA---------------DLAIKLMHSKIGV 630 (650)
Q Consensus 607 l~~~~~~~g~~---------------~~A~~~~~~~~~~ 630 (650)
.+-++...++. ++|...+++++..
T Consensus 184 ~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~ 222 (360)
T PF04910_consen 184 IALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILR 222 (360)
T ss_pred HHHHHHHhcCccccccccccccccchhHHHHHHHHHHHH
Confidence 44556666666 7888888877764
No 397
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=79.67 E-value=9.6 Score=27.29 Aligned_cols=46 Identities=15% Similarity=0.096 Sum_probs=27.7
Q ss_pred hcCCHHHHHHHHHHHhhCCCCcH---HHHHHHHHHHHHcCCHHHHHHHH
Q 045674 544 LSGKVARACKILDELAPKGIIPE---TAFEDMITCLCKTGRIKEACKLA 589 (650)
Q Consensus 544 ~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~ 589 (650)
...+.++|+..|..+++.-.... .++..++.+++..|++.+++++.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666667777777666544433 33445566666777766666553
No 398
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.30 E-value=28 Score=32.63 Aligned_cols=50 Identities=14% Similarity=0.175 Sum_probs=27.5
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 045674 407 RLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEK 456 (650)
Q Consensus 407 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 456 (650)
+.++++.++..=+..|+-||..+++.+++.+.+.+++.+|..+...|+..
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555555554443
No 399
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=78.90 E-value=4.9 Score=25.09 Aligned_cols=26 Identities=27% Similarity=0.457 Sum_probs=20.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCC
Q 045674 152 SLIDCLALCGDVDRVRLVFNELKEKG 177 (650)
Q Consensus 152 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 177 (650)
.++.+|...|+.+.|+.++++++..|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 46778888888888888888888654
No 400
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=78.76 E-value=6.8 Score=36.22 Aligned_cols=62 Identities=11% Similarity=-0.029 Sum_probs=53.2
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 045674 542 LCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIR 604 (650)
Q Consensus 542 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 604 (650)
..+.|+.++|..+|+.++...|.+++++..++......++.-+|-.+|-+++... |-+.+++
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtis-P~nseAL 187 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTIS-PGNSEAL 187 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeC-CCchHHH
Confidence 4578999999999999999999999999999999999999999999999998765 4455543
No 401
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=78.23 E-value=55 Score=29.96 Aligned_cols=190 Identities=11% Similarity=0.078 Sum_probs=116.1
Q ss_pred hcCChHHHHHHHHHHHHcCCCcCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHC---CC--CCCHHhHHHHHHHHHhc
Q 045674 334 KVGKCIEGHAIFESMIRRGCQPNVA---IYTALIDSYAKLGSMNEAINIFERMKYE---GV--EPDEVTYGVIISGLCKN 405 (650)
Q Consensus 334 ~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~--~p~~~~~~~l~~~~~~~ 405 (650)
+..+.++|+.-|++.++..-..... ....++..+.+.|++++.++.|.++..- .+ .-+..+.+.+++.....
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 4557889999999998863222222 4456788899999999999999988531 11 22455677787766666
Q ss_pred CCHHHHHHHHHHHHH----C-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC----CC-------CHHHHHHHH
Q 045674 406 ERLEEAMQYFEFCRA----N-GVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGC----PR-------DSYCYNVLI 469 (650)
Q Consensus 406 g~~~~a~~~~~~~~~----~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~~-------~~~~~~~l~ 469 (650)
.+.+-...+++.-.+ . +-..--.+-.-|...|...+++.+..++++++....- .. -..+|..-+
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 666666666653322 1 1111112234577778888888888888887765321 11 124566667
Q ss_pred HHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHH----HHHhcCCHHHHHHHHHHH
Q 045674 470 DALAKCGKLDEALALFKRMEDE-GCDQTVYTYTILIN----GMFKEHRNEEALKLWDMM 523 (650)
Q Consensus 470 ~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~----~~~~~~~~~~A~~~~~~~ 523 (650)
.+|..+.+-.....++++.+.. ...|.+.....+-. ...+.|++++|-.-|-++
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEA 257 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEA 257 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHH
Confidence 7777777777777788776542 12344443332211 234677887776443333
No 402
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=77.27 E-value=1.1e+02 Score=32.91 Aligned_cols=60 Identities=22% Similarity=0.263 Sum_probs=38.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHCC
Q 045674 152 SLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGM-------VEELLWVWRSMKENG 212 (650)
Q Consensus 152 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------~~~a~~~~~~~~~~~ 212 (650)
.++--+.|+|.+++|.++..+.... .......|...+..|....+ -++...-|++.....
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~ 182 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNS 182 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCC
Confidence 4677788999999999999555443 24455667888888876532 345566666666543
No 403
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=77.19 E-value=11 Score=28.47 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=16.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045674 605 TALINALRKAGNADLAIKLMHSKIGV 630 (650)
Q Consensus 605 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 630 (650)
..++......|++++|...++++++.
T Consensus 45 l~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 45 LNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 34555566666777777666666654
No 404
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=76.38 E-value=20 Score=33.30 Aligned_cols=121 Identities=14% Similarity=0.094 Sum_probs=83.9
Q ss_pred CCCChHHHHHHHHhccC--CCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCCHH
Q 045674 107 IKLSPNFVSFVLRNHDV--SKRPNVGLRLFTWAARQKKYSHNLECYISLIDCLALCGDVDRVRLVFNELKEK-GFLMTVS 183 (650)
Q Consensus 107 ~~~~~~~~~~~l~~~~~--~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~ 183 (650)
+-.++.++..++++... ......-.++.+.+....+-..+..+...++..+++.+++..-.++++..... +...|..
T Consensus 160 Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~r 239 (292)
T PF13929_consen 160 IIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPR 239 (292)
T ss_pred eeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCc
Confidence 34567778887776543 22333444444444433334556778889999999999999999999998876 5677899
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHH-----HHHCCCCCCHHHHHHHHHHH
Q 045674 184 AANSLIKSFGGLGMVEELLWVWRS-----MKENGIEPSLYTYNFLMNGL 227 (650)
Q Consensus 184 ~~~~l~~~~~~~g~~~~a~~~~~~-----~~~~~~~~~~~~~~~ll~~~ 227 (650)
.|...+......|+..-...+.++ +.+.++..+...-..+-..+
T Consensus 240 pW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF 288 (292)
T PF13929_consen 240 PWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELF 288 (292)
T ss_pred hHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHH
Confidence 999999999999998777776654 23345665665555554443
No 405
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=76.28 E-value=5.2 Score=35.36 Aligned_cols=56 Identities=16% Similarity=0.089 Sum_probs=29.8
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 045674 508 FKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGII 564 (650)
Q Consensus 508 ~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 564 (650)
...++.+.|.+++.++.+.-++ ....|..++....+.|+++.|.+-|++..+.++.
T Consensus 6 ~~~~D~~aaaely~qal~lap~-w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~ 61 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPE-WAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPE 61 (287)
T ss_pred cccCChHHHHHHHHHHhhcCch-hhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcc
Confidence 3455555555555555554322 3444555555555555555555555555555544
No 406
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=75.79 E-value=15 Score=27.77 Aligned_cols=26 Identities=12% Similarity=0.120 Sum_probs=15.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc
Q 045674 570 EDMITCLCKTGRIKEACKLADGIVDR 595 (650)
Q Consensus 570 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 595 (650)
..++......|++++|.+.++++++.
T Consensus 45 l~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 45 LNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 33455555666666666666666543
No 407
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=75.35 E-value=67 Score=29.47 Aligned_cols=203 Identities=14% Similarity=0.120 Sum_probs=105.5
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH-HH
Q 045674 404 KNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGK-AGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLD-EA 481 (650)
Q Consensus 404 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A 481 (650)
+......|+++.+.++..++. +-.+|..--..+.. ..++.+-++.+.++.+.. +.+..+|..--......|++. .-
T Consensus 55 ~~E~S~RAl~LT~d~i~lNpA-nYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~n-pKNYQvWHHRr~ive~l~d~s~rE 132 (318)
T KOG0530|consen 55 KNEKSPRALQLTEDAIRLNPA-NYTVWQYRRVILRHLMSDLNKELEYLDEIIEDN-PKNYQVWHHRRVIVELLGDPSFRE 132 (318)
T ss_pred ccccCHHHHHHHHHHHHhCcc-cchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHhcCcccch
Confidence 344455666666666665443 22222211111111 123556666777776664 667777765555555566665 55
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cC-----CHHHHHHHH
Q 045674 482 LALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCL-SG-----KVARACKIL 555 (650)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g-----~~~~A~~~~ 555 (650)
+++.+.|+...-+ +-++|..---++..-+.++.-+.+..++++..+. +...|+.-...... .| ..+.-+.+.
T Consensus 133 Lef~~~~l~~DaK-NYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~-NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt 210 (318)
T KOG0530|consen 133 LEFTKLMLDDDAK-NYHAWSHRQWVLRFFKDYEDELAYADELLEEDIR-NNSAWNQRYFVITNTKGVISKAELERELNYT 210 (318)
T ss_pred HHHHHHHHhcccc-chhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhh-ccchhheeeEEEEeccCCccHHHHHHHHHHH
Confidence 6667777664333 5566655555555566677777777777766554 33333321111111 11 223344555
Q ss_pred HHHhhCCCCcHHHHHHHHHHHHH-cC--CHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHH
Q 045674 556 DELAPKGIIPETAFEDMITCLCK-TG--RIKEACKLADGIV-DREREIPGKIRTALINAL 611 (650)
Q Consensus 556 ~~~~~~~~~~~~~~~~l~~~~~~-~g--~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~ 611 (650)
.+.+..-|.+...|+.|...+.. .| .......+..... ..+ ...+.....++..|
T Consensus 211 ~~~I~~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~~~~~-~~sP~lla~l~d~~ 269 (318)
T KOG0530|consen 211 KDKILLVPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLYLQLP-KRSPFLLAFLLDLY 269 (318)
T ss_pred HHHHHhCCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHhhccC-CCChhHHHHHHHHH
Confidence 66666667777888877766664 44 1233333433333 221 23444444555554
No 408
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=75.15 E-value=34 Score=26.04 Aligned_cols=47 Identities=17% Similarity=0.150 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 045674 515 EALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPK 561 (650)
Q Consensus 515 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 561 (650)
+..+-++.+....+.|++.+..+.+++|.+.+++.-|.++++.+..+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34444445555556666666666666666666666666666666543
No 409
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=74.84 E-value=31 Score=27.79 Aligned_cols=43 Identities=26% Similarity=0.197 Sum_probs=28.7
Q ss_pred HHHHHHHHHhhCCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045674 550 RACKILDELAPKGII--PETAFEDMITCLCKTGRIKEACKLADGI 592 (650)
Q Consensus 550 ~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 592 (650)
++.++|..|..++.. .+..|...+..+...|++++|.++|+..
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 677777777665444 5666777777777777777777777654
No 410
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=74.77 E-value=79 Score=30.01 Aligned_cols=29 Identities=7% Similarity=0.172 Sum_probs=15.1
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 045674 184 AANSLIKSFGGLGMVEELLWVWRSMKENG 212 (650)
Q Consensus 184 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 212 (650)
.+..++.+|+..--.++++-.+++..+.|
T Consensus 301 l~kq~l~~~A~d~aieD~i~~L~~~~r~G 329 (365)
T KOG2391|consen 301 LYKQILECYALDLAIEDAIYSLGKSLRDG 329 (365)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHhcC
Confidence 34455555555444555555555555554
No 411
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=74.54 E-value=16 Score=32.13 Aligned_cols=52 Identities=21% Similarity=0.310 Sum_probs=25.3
Q ss_pred CCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 045674 124 SKRPNVGLRLFTWAARQKKYSHNLECYISLIDCLALCGDVDRVRLVFNELKE 175 (650)
Q Consensus 124 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 175 (650)
..+.+....+.+|+.+.-...|++.++..++.++...|+.++|..+..++..
T Consensus 121 ~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 121 PPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344444444444444433444555555555555555555555555555443
No 412
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=74.46 E-value=52 Score=30.49 Aligned_cols=114 Identities=12% Similarity=0.125 Sum_probs=65.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC---cHHHHH---HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-H
Q 045674 531 TAASFRALSIGLCLSGKVARACKILDELAPKGII---PETAFE---DMITCLCKTGRIKEACKLADGIVDREREIPGK-I 603 (650)
Q Consensus 531 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~ 603 (650)
-...+..++..|++.++.+.+.++..+..+.... ..+++. .++..|....-.++-++..+.+.++|..-+.. -
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNR 193 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNR 193 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhh
Confidence 3456777888888888888888877766543222 223333 34445555555677777778888776332221 1
Q ss_pred HHHH-HHHHHhcCCHHHHHHHHHHHHHCCCC--Chhhhhhhhccc
Q 045674 604 RTAL-INALRKAGNADLAIKLMHSKIGVGYD--RMGSIKRRVKFR 645 (650)
Q Consensus 604 ~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~ 645 (650)
|... +--+....++.+|-.++-..+.. ++ .-...++.++|.
T Consensus 194 yK~Y~Gi~~m~~RnFkeAa~Ll~d~l~t-F~S~El~sY~~~vrYa 237 (412)
T COG5187 194 YKVYKGIFKMMRRNFKEAAILLSDILPT-FESSELISYSRAVRYA 237 (412)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhcc-ccccccccHHHHHHHH
Confidence 1111 22245566788888877776643 22 233344444544
No 413
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=74.19 E-value=36 Score=25.81 Aligned_cols=52 Identities=13% Similarity=0.027 Sum_probs=27.0
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCC
Q 045674 190 KSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMFIESSELVFKVMENGK 247 (650)
Q Consensus 190 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~ 247 (650)
..+...|++++|..+.+.+ +.||...|..|.. .+.|..+++..-+.++...|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 3445566666666655544 3455555554432 34555555555555554443
No 414
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=73.20 E-value=6.7 Score=34.69 Aligned_cols=60 Identities=12% Similarity=0.075 Sum_probs=47.4
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 045674 541 GLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPG 601 (650)
Q Consensus 541 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 601 (650)
...+.|+.+.|.+++.++.+.-|.....|..++..-.+.|+++.|.+.|++.++.+ ++|.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld-p~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD-PEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCC-cccc
Confidence 34567888888888888888877778888888888888888888888888888776 4443
No 415
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=72.84 E-value=1.7e+02 Score=33.05 Aligned_cols=326 Identities=12% Similarity=0.101 Sum_probs=164.6
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHH-------HHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHHHHHH
Q 045674 258 MIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYM-------TLIQACYLEGD---FDSCLSLYHEMDEKGIEIPSHAYNL 327 (650)
Q Consensus 258 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-------~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~ 327 (650)
+=+++.....++.|+..|+++... .+-....|. +++.-....|+ +++|+.-|+.+... +--+--|..
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 557 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRES-FPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGG--VGAPLEYLG 557 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhc-CCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCC--CCCchHHHh
Confidence 346777888899999999998765 221222222 22322333444 67777777776543 223344666
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHc-CCCcCHH------HH--------------HHHHHHHHh---cCCHHHHHHHHHHH
Q 045674 328 VIGGLCKVGKCIEGHAIFESMIRR-GCQPNVA------IY--------------TALIDSYAK---LGSMNEAINIFERM 383 (650)
Q Consensus 328 l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~------~~--------------~~l~~~~~~---~~~~~~A~~~~~~~ 383 (650)
-+..|-+.|++++-.+.+.-..++ ...|... .| .-|+-+... .-...+-.++|+.+
T Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (932)
T PRK13184 558 KALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEKISSREEEKFLEIL 637 (932)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 667788899998888888777665 2223211 11 111111110 01112223334333
Q ss_pred HHC-------CCCCCHHh-----HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 045674 384 KYE-------GVEPDEVT-----YGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFE 451 (650)
Q Consensus 384 ~~~-------~~~p~~~~-----~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 451 (650)
..+ .+.+...+ +..++ +| -.|..---.++|+++... .+..+........+..|.++-+.+..+
T Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 712 (932)
T PRK13184 638 YHKQQATLFCQLDKTPLQFRSSKMELFL-SF-WSGFTPFLPELFQRAWDL---RDYRALADIFYVACDLGNWEFFSQFSD 712 (932)
T ss_pred HhhccCCceeeccCchhhhhhhhHHHHH-HH-HhcCchhhHHHHHHHhhc---ccHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 321 01111111 11111 11 123333344455554443 244445555555678888887776666
Q ss_pred HHHHc----CCCCCHH--------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 045674 452 EMVEK----GCPRDSY--------CYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKL 519 (650)
Q Consensus 452 ~~~~~----~~~~~~~--------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 519 (650)
.+.+. .++.+.. .|..-+.++.....++++.+.+...... .-...+..++.-....++.+....+
T Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 789 (932)
T PRK13184 713 ILAEVSDEITFTESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLDNTDPT---LILYAFDLFAIQALLDEEGESIIQL 789 (932)
T ss_pred HHHHHhhhccchHHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhhhCCHH---HHHHHHHHHHHHHHHhccchHHHHH
Confidence 55532 1111211 1222234444455566655543332111 0122333344334445555555555
Q ss_pred HHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 045674 520 WDMMIDKGITPT--AASFRALSIGLCLSGKVARACKILDELAPKGII--PETAFEDMITCLCKTGRIKEACKLADGIVD 594 (650)
Q Consensus 520 ~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 594 (650)
.+.+.+.-.... .......+++|.-..++++|-+++......... ....+...+.-+.-.++-+-|...|....+
T Consensus 790 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 868 (932)
T PRK13184 790 LQLIYDYVSEEERHDHLLVYEIQAHLWNRDLKKAYKLLNRYPLDLLLDEYSEAFVLYGCYLALTEDREAAKAHFSGCRE 868 (932)
T ss_pred HHHHHhccCChhhhhhhhHHHHHHHHHhccHHHHHHHHHhCChhhhccccchHHHHHHHHHHhcCchhHHHHHHhhccc
Confidence 555554322211 123345677888889999999999665533222 345555556666677777888888877763
No 416
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=72.84 E-value=26 Score=34.70 Aligned_cols=59 Identities=14% Similarity=0.090 Sum_probs=32.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH--CC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 045674 501 TILINGMFKEHRNEEALKLWDMMID--KG-----ITPTAASFRALSIGLCLSGKVARACKILDELA 559 (650)
Q Consensus 501 ~~l~~~~~~~~~~~~A~~~~~~~~~--~~-----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 559 (650)
..|++.++-.||+..|+++++.+.- .+ +.-...++-.++-+|.-.+++.+|.+.|..++
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555666777777776655431 11 11123345556666666666666666666665
No 417
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=72.41 E-value=30 Score=25.47 Aligned_cols=66 Identities=20% Similarity=0.259 Sum_probs=36.1
Q ss_pred HHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 045674 551 ACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAI 621 (650)
Q Consensus 551 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 621 (650)
+.+++....+.|.-+......+-.+-...|+.+.|.+++..+. .+ +..+..++.++...|.-+-|.
T Consensus 21 ~~~v~d~ll~~~ilT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGLLTEEDRNRIEAATENHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHhccccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchhhhh
Confidence 3445555555555544444444433345566666776666665 32 234556666666666655543
No 418
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=72.04 E-value=86 Score=29.24 Aligned_cols=21 Identities=19% Similarity=0.028 Sum_probs=15.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHC
Q 045674 610 ALRKAGNADLAIKLMHSKIGV 630 (650)
Q Consensus 610 ~~~~~g~~~~A~~~~~~~~~~ 630 (650)
-|.-.|+...|...+....++
T Consensus 150 ~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 150 QYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHH
Confidence 366678888888877776665
No 419
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=72.03 E-value=14 Score=34.25 Aligned_cols=63 Identities=11% Similarity=0.026 Sum_probs=52.3
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHH
Q 045674 507 MFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFE 570 (650)
Q Consensus 507 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 570 (650)
..+.|+.++|..+|+.+....+. ++..+..++...-..+++-+|-.+|-+++...|.+.+++.
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~-~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALv 188 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPT-NPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALV 188 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCC-CHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHh
Confidence 34789999999999999987655 7778888888777778899999999999988887766654
No 420
>PF13934 ELYS: Nuclear pore complex assembly
Probab=71.35 E-value=20 Score=32.53 Aligned_cols=119 Identities=16% Similarity=0.137 Sum_probs=58.1
Q ss_pred hhHHHHHHhhcCCCChHHHHHHHH-hccCCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 045674 96 ANLDSFCRKFLIKLSPNFVSFVLR-NHDVSKRPNVGLRLFTWAARQKKYSHNLECYISLIDCLALCGDVDRVRLVFNELK 174 (650)
Q Consensus 96 ~al~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 174 (650)
...+.|...+ .+++..+..+-. .....++++.|+..+..- .. ...-...++.++...|+.+.|..++....
T Consensus 64 ~~~~~Fa~~f--~ip~~~~~~~~g~W~LD~~~~~~A~~~L~~p----s~--~~~~~~~Il~~L~~~~~~~lAL~y~~~~~ 135 (226)
T PF13934_consen 64 ELAESFARAF--GIPPKYIKFIQGFWLLDHGDFEEALELLSHP----SL--IPWFPDKILQALLRRGDPKLALRYLRAVG 135 (226)
T ss_pred cHHHHHHHHh--CCCHHHHHHHHHHHHhChHhHHHHHHHhCCC----CC--CcccHHHHHHHHHHCCChhHHHHHHHhcC
Confidence 3455555443 333443333221 123345666666655321 11 11222356777777777777777776654
Q ss_pred HCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 045674 175 EKGFLMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLV 228 (650)
Q Consensus 175 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 228 (650)
-. ..+......++.. ..++.+.+|..+-+...... ....+..++..+.
T Consensus 136 p~--l~s~~~~~~~~~~-La~~~v~EAf~~~R~~~~~~---~~~l~e~l~~~~~ 183 (226)
T PF13934_consen 136 PP--LSSPEALTLYFVA-LANGLVTEAFSFQRSYPDEL---RRRLFEQLLEHCL 183 (226)
T ss_pred CC--CCCHHHHHHHHHH-HHcCCHHHHHHHHHhCchhh---hHHHHHHHHHHHH
Confidence 22 2233333333333 55677777776666554421 1334444554444
No 421
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.24 E-value=62 Score=33.76 Aligned_cols=60 Identities=7% Similarity=0.142 Sum_probs=28.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045674 569 FEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIG 629 (650)
Q Consensus 569 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 629 (650)
...+..||....+.+.|.++++++.+.+ +.+.-+-.....+....|+-++|.........
T Consensus 397 qR~l~~CYL~L~QLD~A~E~~~EAE~~d-~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 397 QRALQVCYLKLEQLDNAVEVYQEAEEVD-RQSPLCQLLMLQSFLAEDKSEEALTCLQKIKS 456 (872)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhcchHHHHHHHHHHHh
Confidence 3444455555555555555555555433 22333333334444445555555555444433
No 422
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=70.68 E-value=1.6 Score=36.27 Aligned_cols=46 Identities=7% Similarity=0.105 Sum_probs=17.4
Q ss_pred CCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 045674 124 SKRPNVGLRLFTWAARQKKYSHNLECYISLIDCLALCGDVDRVRLVF 170 (650)
Q Consensus 124 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 170 (650)
.+.+.....+++.+.... ...+...++.++..|++.++.+....++
T Consensus 20 ~~~~~~l~~yLe~~~~~~-~~~~~~~~~~L~~ly~~~~~~~~l~~~L 65 (143)
T PF00637_consen 20 RNQPEELIEYLEALVKEN-KENNPDLHTLLLELYIKYDPYEKLLEFL 65 (143)
T ss_dssp TT-GGGCTCCHHHHHHTS-TC-SHHHHHHHHHHHHCTTTCCHHHHTT
T ss_pred CCCHHHHHHHHHHHHhcc-cccCHHHHHHHHHHHHhcCCchHHHHHc
Confidence 344444444444443321 1123334444444444444333333333
No 423
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=70.67 E-value=1.2e+02 Score=30.27 Aligned_cols=57 Identities=14% Similarity=0.218 Sum_probs=38.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHH--HhcCCHHHHHHHHHHHHHC
Q 045674 469 IDALAKCGKLDEALALFKRMEDEGCDQTVY--TYTILINGM--FKEHRNEEALKLWDMMIDK 526 (650)
Q Consensus 469 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~--~~~~~~~~A~~~~~~~~~~ 526 (650)
+..+.+.+++..|.++|+.+... +.++.. .+..+..+| ...-++++|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34455788999999999988876 444443 344444444 3577888888888887654
No 424
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=70.62 E-value=94 Score=29.12 Aligned_cols=59 Identities=8% Similarity=0.086 Sum_probs=29.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 045674 460 RDSYCYNVLIDALAKCGKLDEALALFKRMEDE-GCDQTVYTYTILINGMFKEHRNEEALK 518 (650)
Q Consensus 460 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~ 518 (650)
++..+....+..++..+++..-.++++..... ++..|...|..++......|+..-...
T Consensus 200 l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~k 259 (292)
T PF13929_consen 200 LTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRK 259 (292)
T ss_pred CChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHH
Confidence 44444445555555555555555555544433 333445555555555555555443333
No 425
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=70.11 E-value=1.6 Score=36.24 Aligned_cols=52 Identities=13% Similarity=0.232 Sum_probs=24.5
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 045674 330 GGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFE 381 (650)
Q Consensus 330 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 381 (650)
..+.+.+.......+++.+...+...+....+.++..|++.++.++.+++++
T Consensus 15 ~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 15 SAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 3334444555555555555544333344555555555555554444444444
No 426
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=69.52 E-value=1.3e+02 Score=30.47 Aligned_cols=429 Identities=12% Similarity=0.067 Sum_probs=213.9
Q ss_pred hhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCC-CHHHHHHHH
Q 045674 127 PNVGLRLFTWAARQKKYSHNLECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLG-MVEELLWVW 205 (650)
Q Consensus 127 ~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~ 205 (650)
+.....+++.+... +.+|+..|...+..+-+.+.+.+...+|..++... |.++..|-.-......-+ +++.|..+|
T Consensus 87 ~~rIv~lyr~at~r--f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalf 163 (568)
T KOG2396|consen 87 PNRIVFLYRRATNR--FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALF 163 (568)
T ss_pred HHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHH
Confidence 34455666666554 77899999999998888888999999999999875 667777876666655555 489999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChh---------hHHHHH------HHHHHcCChhH
Q 045674 206 RSMKENGIEPSLYTYNFLMNGLVNSMFIESSELVFKVMENGKVGPDVV---------TYNTMI------KGYCKVGKTQK 270 (650)
Q Consensus 206 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---------~~~~l~------~~~~~~g~~~~ 270 (650)
.+-.+... .+...|...++.-. ..+.++..+-...|...+.. .|+... .+..+.-. ++
T Consensus 164 lrgLR~np-dsp~Lw~eyfrmEL-----~~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e-~~ 236 (568)
T KOG2396|consen 164 LRGLRFNP-DSPKLWKEYFRMEL-----MYAEKLRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVE-LS 236 (568)
T ss_pred HHHhhcCC-CChHHHHHHHHHHH-----HHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcc-hH
Confidence 98888632 24444433332210 11111111111100000000 010000 00000000 00
Q ss_pred HH-----------HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 045674 271 AM-----------EKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCI 339 (650)
Q Consensus 271 A~-----------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 339 (650)
.. .+.+.+...+ +-+..++..+ |.+.++-+......+ +........-.-+.+
T Consensus 237 ~~~~~d~~kel~k~i~d~~~~~~-~~np~~~~~l------------aqr~l~i~~~tdl~~----~~~~~~~~~~~~k~s 299 (568)
T KOG2396|consen 237 VAEKFDFLKELQKNIIDDLQSKA-PDNPLLWDDL------------AQRELEILSQTDLQH----TDNQAKAVEVGSKES 299 (568)
T ss_pred HHHHHHHHHHHHHHHHHHHhccC-CCCCccHHHH------------HHHHHHHHHHhhccc----hhhhhhchhcchhHH
Confidence 11 1112222111 1122233222 222222222111000 000000111111122
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC------CHHHHHHHHHHHHHC-CCCCC-HHhHHHHHHHHHhcCCHHH-
Q 045674 340 EGHAIFESMIRRGCQPNVAIYTALIDSYAKLG------SMNEAINIFERMKYE-GVEPD-EVTYGVIISGLCKNERLEE- 410 (650)
Q Consensus 340 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------~~~~A~~~~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~- 410 (650)
....+|++.... -++...|+..|..|...- .....+.+++..... +..++ ...|..+.-.++..+...+
T Consensus 300 ~~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~ 377 (568)
T KOG2396|consen 300 RCCAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREV 377 (568)
T ss_pred HHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHH
Confidence 233566666554 345555665665554332 344455556555442 22332 3355555555555544332
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-CCHHHH-HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-HHHH-HH-HH
Q 045674 411 AMQYFEFCRANGVAVNAMFYSSLIDGLGKA-GRVDEA-EELFEEMVEKGCPRDSYCYNVLIDALAKCGK-LDEA-LA-LF 485 (650)
Q Consensus 411 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A-~~-~~ 485 (650)
|..+.... ...+...|..-+....+. .+++-- .+.+......-..+....|+... .|+ .+.. +. ++
T Consensus 378 a~~l~~e~----f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii 448 (568)
T KOG2396|consen 378 AVKLTTEL----FRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLII 448 (568)
T ss_pred HHHhhHHH----hcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHH
Confidence 33333232 333555555555544422 222211 12222232221122223333322 222 2221 11 22
Q ss_pred HHHHHcCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHhhCC
Q 045674 486 KRMEDEGCDQTVYTY-TILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCL--SGKVARACKILDELAPKG 562 (650)
Q Consensus 486 ~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~ 562 (650)
...... ..++..++ +.++.-+.+.|-+.+|...+..+... +.|+...+..+++.-.. .-+..-+.++|+.+....
T Consensus 449 ~a~~s~-~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~f 526 (568)
T KOG2396|consen 449 SALLSV-IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREF 526 (568)
T ss_pred HHHHHh-cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHh
Confidence 222222 23444444 45667777899999999999999876 56688888877764321 223777889999888653
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 045674 563 IIPETAFEDMITCLCKTGRIKEACKLADGIVDR 595 (650)
Q Consensus 563 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 595 (650)
-.+++.|......-...|..+.+-.++-++.+.
T Consensus 527 g~d~~lw~~y~~~e~~~g~~en~~~~~~ra~kt 559 (568)
T KOG2396|consen 527 GADSDLWMDYMKEELPLGRPENCGQIYWRAMKT 559 (568)
T ss_pred CCChHHHHHHHHhhccCCCcccccHHHHHHHHh
Confidence 378999988888888899988888887777653
No 427
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=69.13 E-value=1.8e+02 Score=31.70 Aligned_cols=227 Identities=10% Similarity=-0.038 Sum_probs=111.4
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH---HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 045674 393 VTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYS---SLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLI 469 (650)
Q Consensus 393 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 469 (650)
..|..++..+...|+.-.....++++....+. +...|. .....-. +-.+.+..++...... ++-...+|....
T Consensus 313 q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~-~~~~wi~y~~~~d~eL--kv~~~~~~~~~ra~R~-cp~tgdL~~ral 388 (881)
T KOG0128|consen 313 QEWMSYIDFEKKSGDPVRIQLIEERAVAEMVL-DRALWIGYGVYLDTEL--KVPQRGVSVHPRAVRS-CPWTGDLWKRAL 388 (881)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHhccc-cHHHHhhhhhhccccc--ccccccccccchhhcC-CchHHHHHHHHH
Confidence 45566666666677766666666665544222 222221 1111111 1122333344434333 234444555444
Q ss_pred HHHHHcCCHHH-HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC------CH-------HHHHHHHHHHHHCCCCCCHHHH
Q 045674 470 DALAKCGKLDE-ALALFKRMEDEGCDQTVYTYTILINGMFKEH------RN-------EEALKLWDMMIDKGITPTAASF 535 (650)
Q Consensus 470 ~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------~~-------~~A~~~~~~~~~~~~~p~~~~~ 535 (650)
.++.+.+.... -...+...+..++. .++....-..+.+ ++ ..|...|.........+...++
T Consensus 389 lAleR~re~~~vI~~~l~~~ls~~~~----l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~ 464 (881)
T KOG0128|consen 389 LALERNREEITVIVQNLEKDLSMTVE----LHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVL 464 (881)
T ss_pred HHHHhcCcchhhHHHHHHHHHHHHHH----HHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Confidence 45555443322 22333333333222 2222221111222 22 3333333333322222233333
Q ss_pred HHHHHHH-HhcCCHHHHHHHHHHHhhCCCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHH
Q 045674 536 RALSIGL-CLSGKVARACKILDELAPKGIIPET-AFEDMITCLCKTGRIKEACKLADGIVDREREIP--GKIRTALINAL 611 (650)
Q Consensus 536 ~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~ 611 (650)
...+... ...++.+.++.+++.+...+..+.. .|...+..-...|+...|+.+++++...-..|+ ..++..+...-
T Consensus 465 q~wA~~E~sl~~nmd~~R~iWn~imty~~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~~~~~~~~ev~~~~~r~E 544 (881)
T KOG0128|consen 465 QLWAQVEASLLKNMDKAREIWNFIMTYGGGSIAGKWLEAINLEREYGDGPSARKVLRKAYSQVVDPEDALEVLEFFRRFE 544 (881)
T ss_pred HHHHHHHHHHhhchhhhhHhhhccccCCcchHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcCcCchhHHHHHHHHHHHH
Confidence 3333333 3467888899999988887666544 677777777778888899888888876644443 23444444444
Q ss_pred HhcCCHHHHHHHHHHH
Q 045674 612 RKAGNADLAIKLMHSK 627 (650)
Q Consensus 612 ~~~g~~~~A~~~~~~~ 627 (650)
...|.++......++.
T Consensus 545 re~gtl~~~~~~~~~~ 560 (881)
T KOG0128|consen 545 REYGTLESFDLCPEKV 560 (881)
T ss_pred hccccHHHHhhhHHhh
Confidence 5566666655544443
No 428
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=69.04 E-value=12 Score=20.82 Aligned_cols=26 Identities=12% Similarity=0.114 Sum_probs=11.2
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 045674 581 RIKEACKLADGIVDREREIPGKIRTAL 607 (650)
Q Consensus 581 ~~~~A~~~~~~~~~~~~~~~~~~~~~l 607 (650)
+.+.|..+|++++... +.+...|..+
T Consensus 2 ~~~~~r~i~e~~l~~~-~~~~~~W~~y 27 (33)
T smart00386 2 DIERARKIYERALEKF-PKSVELWLKY 27 (33)
T ss_pred cHHHHHHHHHHHHHHC-CCChHHHHHH
Confidence 3444444444444432 3344444433
No 429
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=68.78 E-value=1.7e+02 Score=31.38 Aligned_cols=121 Identities=12% Similarity=0.030 Sum_probs=59.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHH
Q 045674 506 GMFKEHRNEEALKLWDMMIDKGITPTAA--SFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIK 583 (650)
Q Consensus 506 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 583 (650)
++..-|+.++|..+.++|.... .|-.. -...++.+|+-.|+.....+++.-++.-.-+|..-...++-.+.-..+.+
T Consensus 510 aL~~ygrqe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~ 588 (929)
T KOG2062|consen 510 ALVVYGRQEDADPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE 588 (929)
T ss_pred HHHHhhhhhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhcccccccchHHHHHHHHHheeeEecChh
Confidence 3445566677777777776431 22111 12344555666666666666665555432223333333333333444555
Q ss_pred HHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045674 584 EACKLADGIVDREREIPGK--IRTALINALRKAGNADLAIKLMHSKIG 629 (650)
Q Consensus 584 ~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~ 629 (650)
....+.+-+.+. +.|... +-..|+-+|.-.|+ .+|+.+++-+.+
T Consensus 589 ~~~s~V~lLses-~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~ 634 (929)
T KOG2062|consen 589 QLPSTVSLLSES-YNPHVRYGAAMALGIACAGTGL-KEAINLLEPLTS 634 (929)
T ss_pred hchHHHHHHhhh-cChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhc
Confidence 555555544443 233322 22234444555554 556666666554
No 430
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=68.06 E-value=67 Score=30.63 Aligned_cols=22 Identities=9% Similarity=0.045 Sum_probs=11.1
Q ss_pred HHHHHcCCCHHHHHHHHHHHHH
Q 045674 189 IKSFGGLGMVEELLWVWRSMKE 210 (650)
Q Consensus 189 ~~~~~~~g~~~~a~~~~~~~~~ 210 (650)
++.+...|+.+++.+.+++..+
T Consensus 122 ~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 122 ARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HHHHHhcccHHHHHHHHHHHHH
Confidence 3344445555555555555444
No 431
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=67.24 E-value=50 Score=26.29 Aligned_cols=46 Identities=20% Similarity=0.211 Sum_probs=33.0
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 045674 516 ALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPK 561 (650)
Q Consensus 516 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 561 (650)
..+-+.......+.|++......++++.+.+++..|.++|+-+..+
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3444555556667778888777788888888888888888777654
No 432
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=66.88 E-value=1.1e+02 Score=28.51 Aligned_cols=19 Identities=16% Similarity=0.307 Sum_probs=10.6
Q ss_pred HHhcCCHHHHHHHHHHHhh
Q 045674 542 LCLSGKVARACKILDELAP 560 (650)
Q Consensus 542 ~~~~g~~~~A~~~~~~~~~ 560 (650)
|.-.|+...|...++...+
T Consensus 151 yL~l~n~~~A~~~~~~f~~ 169 (260)
T PF04190_consen 151 YLCLGNLRDANELFDTFTS 169 (260)
T ss_dssp HHHTTBHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHH
Confidence 3445666666665555543
No 433
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=64.81 E-value=2.2e+02 Score=31.11 Aligned_cols=406 Identities=14% Similarity=0.056 Sum_probs=179.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH---HcCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 045674 146 NLECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSF---GGLGMVEELLWVWRSMKENGIEPSLYTYNF 222 (650)
Q Consensus 146 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 222 (650)
+...+..|+..+.+.|++++....-..|.+.- +.+...|..-+.-. ...+...++..+|++....... +..|.-
T Consensus 112 ~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~-pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy~~--v~iw~e 188 (881)
T KOG0128|consen 112 KYAQMVQLIGLLRKLGDLEKLRQARLEMSEIA-PLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDYNS--VPIWEE 188 (881)
T ss_pred chHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhccccc--chHHHH
Confidence 45566778888888888877666655555542 55666665544432 2336667777777777665333 333333
Q ss_pred HHHHHHh-------cCChhHHHHHHHHHhcC-CCCC--ChhhHHHHH---HHHHHcCChhHHHHHHHHHHhCCCCCCHHH
Q 045674 223 LMNGLVN-------SMFIESSELVFKVMENG-KVGP--DVVTYNTMI---KGYCKVGKTQKAMEKFRAMEARNVQPDKIT 289 (650)
Q Consensus 223 ll~~~~~-------~~~~~~A~~~~~~~~~~-~~~~--~~~~~~~l~---~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 289 (650)
.+..++. .++++..+.+|.+.+.. |... ....|..+. ..|...-..++...++..-+..+ .|..+
T Consensus 189 ~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~--~D~~~ 266 (881)
T KOG0128|consen 189 VVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQP--LDEDT 266 (881)
T ss_pred HHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc--chhhh
Confidence 3333332 24455666666665532 1110 111111111 12222222233333333332221 11111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh
Q 045674 290 YMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAK 369 (650)
Q Consensus 290 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 369 (650)
.+ .++....... .++..+++ .+-...+..+-+..|+..... ..+-...|..++.-+..
T Consensus 267 ~~---------------~~~~~~sk~h--~~~~~~~~----~~~a~~~l~~~~~~~e~~~q~-~~~~~q~~~~yidfe~~ 324 (881)
T KOG0128|consen 267 RG---------------WDLSEQSKAH--VYDVETKK----LDDALKNLAKILFKFERLVQK-EPIKDQEWMSYIDFEKK 324 (881)
T ss_pred hH---------------HHHHHHHhcc--hHHHHhcc----HHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHh
Confidence 10 0011100000 00000000 000001111222223333332 12223456667777788
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHhH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-HHH
Q 045674 370 LGSMNEAINIFERMKYEGVEPDEVTY---GVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGR-VDE 445 (650)
Q Consensus 370 ~~~~~~A~~~~~~~~~~~~~p~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~ 445 (650)
.|+.-.....++++...... +...| ...++.-.+ -.+.+...+...... +.-...+|...+-++.+.+. ...
T Consensus 325 ~G~p~ri~l~~eR~~~E~~~-~~~~wi~y~~~~d~eLk--v~~~~~~~~~ra~R~-cp~tgdL~~rallAleR~re~~~v 400 (881)
T KOG0128|consen 325 SGDPVRIQLIEERAVAEMVL-DRALWIGYGVYLDTELK--VPQRGVSVHPRAVRS-CPWTGDLWKRALLALERNREEITV 400 (881)
T ss_pred cCCchHHHHHHHHHHHhccc-cHHHHhhhhhhcccccc--cccccccccchhhcC-CchHHHHHHHHHHHHHhcCcchhh
Confidence 88888877777777654211 22222 222221111 122233333333322 22233344433333444333 222
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC------HHHHHHHHHHH-------HHcCCCCCHHHHHHHHHHHH-hcC
Q 045674 446 AEELFEEMVEKGCPRDSYCYNVLIDALAKCGK------LDEALALFKRM-------EDEGCDQTVYTYTILINGMF-KEH 511 (650)
Q Consensus 446 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~A~~~~~~~-------~~~~~~~~~~~~~~l~~~~~-~~~ 511 (650)
-...|...+..++ ..++........+++ ++.-.+.|+.. ......+...+........+ -.+
T Consensus 401 I~~~l~~~ls~~~----~l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~ 476 (881)
T KOG0128|consen 401 IVQNLEKDLSMTV----ELHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLK 476 (881)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhh
Confidence 3333333333321 123333333333333 33333333333 22212233333333333332 478
Q ss_pred CHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcH---HHHHHHHHHHHHcCCHHHHHH
Q 045674 512 RNEEALKLWDMMIDKGITPTAA-SFRALSIGLCLSGKVARACKILDELAPKGIIPE---TAFEDMITCLCKTGRIKEACK 587 (650)
Q Consensus 512 ~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~ 587 (650)
+.+.++.+|+.....|-. +.. .|...+..-...|+...++.+++.+...-..+. .++..+-......|.++....
T Consensus 477 nmd~~R~iWn~imty~~~-~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~~~~~~~~ev~~~~~r~Ere~gtl~~~~~ 555 (881)
T KOG0128|consen 477 NMDKAREIWNFIMTYGGG-SIAGKWLEAINLEREYGDGPSARKVLRKAYSQVVDPEDALEVLEFFRRFEREYGTLESFDL 555 (881)
T ss_pred chhhhhHhhhccccCCcc-hHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcCcCchhHHHHHHHHHHHHhccccHHHHhh
Confidence 899999999998876543 333 566666666677999999998888876533322 233333333344455554433
No 434
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.06 E-value=1.9e+02 Score=30.10 Aligned_cols=50 Identities=16% Similarity=0.060 Sum_probs=20.9
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHH
Q 045674 473 AKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMF-KEHRNEEALKLWDM 522 (650)
Q Consensus 473 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~ 522 (650)
.+.|-+..|.++-+-+....+.-|+.....+|..|+ +..+++-.+++++.
T Consensus 353 ~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~ 403 (665)
T KOG2422|consen 353 AQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNE 403 (665)
T ss_pred HhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 344444444444444444433333333333443332 33444444444433
No 435
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=63.85 E-value=1.6e+02 Score=29.12 Aligned_cols=35 Identities=20% Similarity=0.378 Sum_probs=18.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCChhhhhhhh
Q 045674 608 INALRKAGNADLAIKLMHSKIGVGYDRMGSIKRRV 642 (650)
Q Consensus 608 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 642 (650)
..-+...|-+.-+..+-+.+++.|++..+..|.++
T Consensus 344 k~~f~~D~ty~LivRLR~NVIkTgIR~ISlsYSRI 378 (493)
T KOG2581|consen 344 KDKFQADGTYTLIVRLRHNVIKTGIRKISLSYSRI 378 (493)
T ss_pred HHHHhhCCcchHHHHHHHHHHHHhhhheeeeeeec
Confidence 33344455555555555556665555555444444
No 436
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=62.85 E-value=2.2e+02 Score=30.42 Aligned_cols=26 Identities=19% Similarity=0.247 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHH
Q 045674 147 LECYISLIDCLALCGDVDRVRLVFNEL 173 (650)
Q Consensus 147 ~~~~~~l~~~~~~~g~~~~A~~~~~~~ 173 (650)
+.-|. .+..+.-.|.+++|..++...
T Consensus 149 p~FW~-~v~~lvlrG~~~~a~~lL~~~ 174 (566)
T PF07575_consen 149 PDFWD-YVQRLVLRGLFDQARQLLRLH 174 (566)
T ss_dssp HHHHH-HHHHHHHTT-HHHHHHHH-TT
T ss_pred hhHHH-HHHHHHHcCCHHHHHHHHHhc
Confidence 44454 677788889999999888443
No 437
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=62.50 E-value=81 Score=25.41 Aligned_cols=43 Identities=14% Similarity=0.066 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHH
Q 045674 165 RVRLVFNELKEKGFLMT-VSAANSLIKSFGGLGMVEELLWVWRS 207 (650)
Q Consensus 165 ~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~ 207 (650)
.+..+|..|..+|+... ...|..-+..+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 56666666666554333 33455555566666666666666654
No 438
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=62.48 E-value=24 Score=33.00 Aligned_cols=80 Identities=5% Similarity=-0.035 Sum_probs=59.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHH
Q 045674 494 DQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRA-LSIGLCLSGKVARACKILDELAPKGIIPETAFEDM 572 (650)
Q Consensus 494 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 572 (650)
..|+..|...+.-..+.|.+.+.-.++.+....++. |...|.. ...-+...++++.+..+|.+.+..++.++.+|...
T Consensus 104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~-nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ey 182 (435)
T COG5191 104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPL-NVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEY 182 (435)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHH
Confidence 347777777766556778888888999988887554 6665543 33345678899999999999999988888888776
Q ss_pred HH
Q 045674 573 IT 574 (650)
Q Consensus 573 ~~ 574 (650)
..
T Consensus 183 fr 184 (435)
T COG5191 183 FR 184 (435)
T ss_pred HH
Confidence 54
No 439
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=62.25 E-value=30 Score=20.45 Aligned_cols=20 Identities=25% Similarity=0.257 Sum_probs=9.7
Q ss_pred HHHHHHHHHhcCCHHHHHHH
Q 045674 604 RTALINALRKAGNADLAIKL 623 (650)
Q Consensus 604 ~~~l~~~~~~~g~~~~A~~~ 623 (650)
+..++-.+...|++++|+++
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHH
Confidence 33444445555555555555
No 440
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=62.11 E-value=74 Score=24.81 Aligned_cols=39 Identities=13% Similarity=0.019 Sum_probs=16.1
Q ss_pred HHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 045674 555 LDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIV 593 (650)
Q Consensus 555 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 593 (650)
+.+.....|.....+..++.-+.....|+++..-.++.+
T Consensus 67 ~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~L 105 (111)
T PF04781_consen 67 FSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGL 105 (111)
T ss_pred HHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 333333333333333344443333444455544444444
No 441
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=62.04 E-value=1.1e+02 Score=30.49 Aligned_cols=94 Identities=18% Similarity=0.146 Sum_probs=62.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH-------HCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHhh--CC----
Q 045674 501 TILINGMFKEHRNEEALKLWDMMI-------DKGITPTA-----ASFRALSIGLCLSGKVARACKILDELAP--KG---- 562 (650)
Q Consensus 501 ~~l~~~~~~~~~~~~A~~~~~~~~-------~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~---- 562 (650)
..++..+....+..+.++..+... +.|..|-. .++..+++.++-.|++..|++.++.+-- .+
T Consensus 79 LnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~ 158 (404)
T PF10255_consen 79 LNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTK 158 (404)
T ss_pred HHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccCcccchhhcc
Confidence 334555566666666665555421 11222111 2235667788899999999999887642 11
Q ss_pred -CC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 045674 563 -II-PETAFEDMITCLCKTGRIKEACKLADGIVD 594 (650)
Q Consensus 563 -~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 594 (650)
+. ...++..+|-+|...+++.+|++.|..++-
T Consensus 159 V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 159 VPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred CcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12 456788999999999999999999998873
No 442
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=61.97 E-value=1.8e+02 Score=29.09 Aligned_cols=57 Identities=18% Similarity=0.205 Sum_probs=42.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHH--cCCHHHHHHHHHHHHHc
Q 045674 434 IDGLGKAGRVDEAEELFEEMVEKGCPRDSY--CYNVLIDALAK--CGKLDEALALFKRMEDE 491 (650)
Q Consensus 434 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~--~g~~~~A~~~~~~~~~~ 491 (650)
+..+...+++..|.++++.+... ++++.. .+..+..+|.. .-++++|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 44456889999999999999987 555554 45556666654 56788999999988764
No 443
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=60.16 E-value=2.5e+02 Score=30.27 Aligned_cols=44 Identities=11% Similarity=0.021 Sum_probs=26.7
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 045674 541 GLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDRE 596 (650)
Q Consensus 541 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 596 (650)
.+.+.|..+.-.++|+-+.-. .+-.-++++.+|+...+.|.+.+
T Consensus 353 LlgrKG~leklq~YWdV~~y~------------~asVLAnd~~kaiqAae~mfKLk 396 (1226)
T KOG4279|consen 353 LLGRKGALEKLQEYWDVATYF------------EASVLANDYQKAIQAAEMMFKLK 396 (1226)
T ss_pred HhhccchHHHHHHHHhHHHhh------------hhhhhccCHHHHHHHHHHHhccC
Confidence 355667777666666554321 22334567777777777777664
No 444
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=60.13 E-value=1.1e+02 Score=29.61 Aligned_cols=64 Identities=13% Similarity=0.107 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhhCCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 045674 549 ARACKILDELAPKGII---PETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALR 612 (650)
Q Consensus 549 ~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 612 (650)
++...++..+++.=|. -...|.+++..+-..|.+++.+.+|++++..|..|-.+....+++.+.
T Consensus 120 eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 120 EEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 4555566655554333 345677777777777777778888888877776666666666666654
No 445
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=59.13 E-value=1.7e+02 Score=27.91 Aligned_cols=52 Identities=19% Similarity=0.013 Sum_probs=22.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 045674 506 GMFKEHRNEEALKLWDMMIDKGITPT-AASFRALSIGLCLSGKVARACKILDE 557 (650)
Q Consensus 506 ~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 557 (650)
+.-+.|+..+|.+.++.+.+.-+-.+ ......++.++....-+.+...++-+
T Consensus 284 CARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLak 336 (556)
T KOG3807|consen 284 CARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAK 336 (556)
T ss_pred HHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33456666666666665554311100 11223344444444444444444433
No 446
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=58.84 E-value=37 Score=35.96 Aligned_cols=11 Identities=27% Similarity=0.344 Sum_probs=4.5
Q ss_pred ChhHHHHHHHH
Q 045674 162 DVDRVRLVFNE 172 (650)
Q Consensus 162 ~~~~A~~~~~~ 172 (650)
++++-.+.|..
T Consensus 402 D~~~~ee~Fk~ 412 (830)
T KOG1923|consen 402 DFSRFEEQFKI 412 (830)
T ss_pred hHHHHHHHHHh
Confidence 33444444433
No 447
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=58.66 E-value=2e+02 Score=29.64 Aligned_cols=32 Identities=6% Similarity=0.129 Sum_probs=17.7
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 045674 565 PETAFEDMITCLCKTGRIKEACKLADGIVDRE 596 (650)
Q Consensus 565 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 596 (650)
+...+..++......+....|+.+++++++.|
T Consensus 247 ~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G 278 (484)
T PRK14956 247 GIEFLTSFIKSLIDPDNHSKSLEILESLYQEG 278 (484)
T ss_pred CHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcC
Confidence 44444445554444444556666666666665
No 448
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=58.38 E-value=2.6e+02 Score=29.85 Aligned_cols=23 Identities=4% Similarity=0.008 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHH
Q 045674 182 VSAANSLIKSFGGLGMVEELLWVW 205 (650)
Q Consensus 182 ~~~~~~l~~~~~~~g~~~~a~~~~ 205 (650)
+.-|+ .+..+.-.|.++.|.+++
T Consensus 149 p~FW~-~v~~lvlrG~~~~a~~lL 171 (566)
T PF07575_consen 149 PDFWD-YVQRLVLRGLFDQARQLL 171 (566)
T ss_dssp HHHHH-HHHHHHHTT-HHHHHHHH
T ss_pred hhHHH-HHHHHHHcCCHHHHHHHH
Confidence 34444 344444455555555555
No 449
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=57.63 E-value=34 Score=23.34 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=9.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 045674 503 LINGMFKEHRNEEALKLWDMMI 524 (650)
Q Consensus 503 l~~~~~~~~~~~~A~~~~~~~~ 524 (650)
++.+|...|++++|.++++++.
T Consensus 29 vI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 29 VIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 3444444444444444444443
No 450
>PRK09857 putative transposase; Provisional
Probab=57.49 E-value=1.3e+02 Score=28.68 Aligned_cols=31 Identities=16% Similarity=0.269 Sum_probs=15.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 045674 604 RTALINALRKAGNADLAIKLMHSKIGVGYDR 634 (650)
Q Consensus 604 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 634 (650)
...++.-+.+.|.-+++++..++++..|...
T Consensus 243 iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~ 273 (292)
T PRK09857 243 LMTIAERLRQEGEQSKALHIAKIMLESGVPL 273 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 3344444444444455555555555555553
No 451
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=57.34 E-value=26 Score=21.09 Aligned_cols=27 Identities=4% Similarity=0.053 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 045674 568 AFEDMITCLCKTGRIKEACKLADGIVD 594 (650)
Q Consensus 568 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 594 (650)
++..|+.+-...+++++|.+=|+++++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 455666666666666666666666654
No 452
>PF13934 ELYS: Nuclear pore complex assembly
Probab=56.59 E-value=1.6e+02 Score=26.82 Aligned_cols=121 Identities=17% Similarity=0.215 Sum_probs=72.9
Q ss_pred HHHHHHHHH--hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Q 045674 500 YTILINGMF--KEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLC 577 (650)
Q Consensus 500 ~~~l~~~~~--~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 577 (650)
|..++.++. ..+++++|.+.+-.- .+.| ..-..++.++...|+.+.|+.+++...-. ..+.+....+..+ .
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~--~~~~~Il~~L~~~~~~~lAL~y~~~~~p~-l~s~~~~~~~~~~-L 151 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSHP---SLIP--WFPDKILQALLRRGDPKLALRYLRAVGPP-LSSPEALTLYFVA-L 151 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCCC---CCCc--ccHHHHHHHHHHCCChhHHHHHHHhcCCC-CCCHHHHHHHHHH-H
Confidence 556666665 456777777776321 1122 22335777788889999999998886432 2255555554444 6
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 045674 578 KTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYD 633 (650)
Q Consensus 578 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 633 (650)
..|.+.||..+.+...+. .....+..++..+..... + ...++++++.=..
T Consensus 152 a~~~v~EAf~~~R~~~~~---~~~~l~e~l~~~~~~~~~--~-~~~~~~Ll~LPl~ 201 (226)
T PF13934_consen 152 ANGLVTEAFSFQRSYPDE---LRRRLFEQLLEHCLEECA--R-SGRLDELLSLPLD 201 (226)
T ss_pred HcCCHHHHHHHHHhCchh---hhHHHHHHHHHHHHHHhh--h-hhHHHHHHhCCCC
Confidence 678999999888876542 124466666666665443 1 2235555555443
No 453
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=56.56 E-value=1.5e+02 Score=26.75 Aligned_cols=70 Identities=19% Similarity=0.200 Sum_probs=43.3
Q ss_pred HhcCCHHHHHHHHHHHHHC------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Q 045674 508 FKEHRNEEALKLWDMMIDK------------GITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITC 575 (650)
Q Consensus 508 ~~~~~~~~A~~~~~~~~~~------------~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 575 (650)
...|+..+|+..++.-... --.|.+.....++..+ ..+++++|.+++.++.+.|..+.++...+.++
T Consensus 203 ta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~-~~~~~~~A~~il~~lw~lgysp~Dii~~~FRv 281 (333)
T KOG0991|consen 203 TAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQAC-LKRNIDEALKILAELWKLGYSPEDIITTLFRV 281 (333)
T ss_pred hccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHH-HhccHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3456666666555543321 1245555555665544 45788888888888888888877777766655
Q ss_pred HHH
Q 045674 576 LCK 578 (650)
Q Consensus 576 ~~~ 578 (650)
.-.
T Consensus 282 ~K~ 284 (333)
T KOG0991|consen 282 VKN 284 (333)
T ss_pred HHh
Confidence 433
No 454
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=56.54 E-value=1.7e+02 Score=27.31 Aligned_cols=97 Identities=15% Similarity=0.185 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHH----cCCCcCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----
Q 045674 322 SHAYNLVIGGLCKVGKCIEGHAIFESMIR----RGCQPNVAIYT-ALIDSYAKLGSMNEAINIFERMKYEGVEPDE---- 392 (650)
Q Consensus 322 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~-~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~---- 392 (650)
..++..++..|++.++.+.+.+.+.+..+ .|.+-|+.... -|...|....-.++-++..+.|.++|..-+.
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRy 194 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRY 194 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhH
Confidence 45566677777777777777766555444 34444443221 1222333344456666666667666544332
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045674 393 VTYGVIISGLCKNERLEEAMQYFEFCRA 420 (650)
Q Consensus 393 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 420 (650)
.+|.-+. +....++.+|-.++.....
T Consensus 195 K~Y~Gi~--~m~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 195 KVYKGIF--KMMRRNFKEAAILLSDILP 220 (412)
T ss_pred HHHHHHH--HHHHHhhHHHHHHHHHHhc
Confidence 1232222 2233455566666555443
No 455
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=56.25 E-value=96 Score=24.79 Aligned_cols=59 Identities=10% Similarity=0.205 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 045674 165 RVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLM 224 (650)
Q Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll 224 (650)
+.++.+..+..-++.|++.+...-++++.+.+++..|+.+|+-++.. +.+....|..++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHH
Confidence 34555566666667778888888888888888888888888877655 233333455444
No 456
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=56.21 E-value=92 Score=24.07 Aligned_cols=79 Identities=11% Similarity=0.074 Sum_probs=34.2
Q ss_pred CCChhHHHHHHHHHHHcCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHH
Q 045674 124 SKRPNVGLRLFTWAARQKKYSHNLE-CYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELL 202 (650)
Q Consensus 124 ~~~~~~al~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 202 (650)
....++|..+.+|....++ ..+ +--..+..+.++|++++| +..-... ..||...|.+|.. .+.|..+++.
T Consensus 19 ~HcH~EA~tIa~wL~~~~~---~~E~v~lIr~~sLmNrG~Yq~A---Ll~~~~~-~~pdL~p~~AL~a--~klGL~~~~e 89 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEGE---MEEVVALIRLSSLMNRGDYQEA---LLLPQCH-CYPDLEPWAALCA--WKLGLASALE 89 (116)
T ss_dssp TT-HHHHHHHHHHHHHTTT---THHHHHHHHHHHHHHTT-HHHH---HHHHTTS---GGGHHHHHHHH--HHCT-HHHHH
T ss_pred hHHHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHHhhHHHHHH---HHhcccC-CCccHHHHHHHHH--HhhccHHHHH
Confidence 3456666666666665542 111 222233344566666666 2122111 1344444444433 3455555555
Q ss_pred HHHHHHHHC
Q 045674 203 WVWRSMKEN 211 (650)
Q Consensus 203 ~~~~~~~~~ 211 (650)
..+.++...
T Consensus 90 ~~l~rla~~ 98 (116)
T PF09477_consen 90 SRLTRLASS 98 (116)
T ss_dssp HHHHHHCT-
T ss_pred HHHHHHHhC
Confidence 555555444
No 457
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=56.08 E-value=80 Score=23.32 Aligned_cols=66 Identities=17% Similarity=0.219 Sum_probs=40.9
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHH
Q 045674 516 ALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEAC 586 (650)
Q Consensus 516 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 586 (650)
+.++++...+.|+- +......+-.+-...|+.+.|.+++..+. .| +..|.....++...|.-+-|.
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg---~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QK---EGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cC---CcHHHHHHHHHHHcCchhhhh
Confidence 44566666666654 44444444333335678888888888887 54 446666777777777655554
No 458
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=56.01 E-value=40 Score=29.66 Aligned_cols=35 Identities=11% Similarity=-0.015 Sum_probs=22.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 045674 598 EIPGKIRTALINALRKAGNADLAIKLMHSKIGVGY 632 (650)
Q Consensus 598 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 632 (650)
.|++.++..++.++...|+.++|.+.++++...-+
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 46666666666666666666666666666665544
No 459
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=55.95 E-value=1.1e+02 Score=24.69 Aligned_cols=41 Identities=24% Similarity=0.264 Sum_probs=26.6
Q ss_pred HHHHHHHHHhhCCCC--cHHHHHHHHHHHHHcCCHHHHHHHHH
Q 045674 550 RACKILDELAPKGII--PETAFEDMITCLCKTGRIKEACKLAD 590 (650)
Q Consensus 550 ~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~ 590 (650)
++.++|..+..+++. -...|...+..+...|++.+|.++|+
T Consensus 81 dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 81 EPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 355666666666554 45556666777777777777777765
No 460
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=55.79 E-value=3e+02 Score=29.77 Aligned_cols=176 Identities=14% Similarity=0.140 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH----------HHHHHHHHHHcCCHHHHHHHHHHHHHc-C-CCC
Q 045674 428 MFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYC----------YNVLIDALAKCGKLDEALALFKRMEDE-G-CDQ 495 (650)
Q Consensus 428 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~----------~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~ 495 (650)
.+...++-.|....+++..+++.+.+... ||..- |..-++--.+-|+-++|+...-.+.+. | +.|
T Consensus 202 d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap 278 (1226)
T KOG4279|consen 202 DTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP 278 (1226)
T ss_pred HHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC
Confidence 34444555566666666666666666553 22111 111111111335566666655555442 2 224
Q ss_pred CHHHHHH-------HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHhhCCCCcHH
Q 045674 496 TVYTYTI-------LINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGK-VARACKILDELAPKGIIPET 567 (650)
Q Consensus 496 ~~~~~~~-------l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~ 567 (650)
|...... +...|...+..+.|.+.|+++-+ ++|+...=..++..+...|. ++...++ ..
T Consensus 279 Dm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG~~Fens~El-----------q~ 345 (1226)
T KOG4279|consen 279 DMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAGEHFENSLEL-----------QQ 345 (1226)
T ss_pred ceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhhhhccchHHH-----------HH
Confidence 4321110 00112234445566666666654 34444333333333333332 1111111 11
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 045674 568 AFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGY 632 (650)
Q Consensus 568 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 632 (650)
+-..|...+.+.|..+.-.++|+-+. +..+-.-.+++.+|++..+.|.+..+
T Consensus 346 IgmkLn~LlgrKG~leklq~YWdV~~-------------y~~asVLAnd~~kaiqAae~mfKLk~ 397 (1226)
T KOG4279|consen 346 IGMKLNSLLGRKGALEKLQEYWDVAT-------------YFEASVLANDYQKAIQAAEMMFKLKP 397 (1226)
T ss_pred HHHHHHHHhhccchHHHHHHHHhHHH-------------hhhhhhhccCHHHHHHHHHHHhccCC
Confidence 22335556677888887777776543 22223346788888888888888654
No 461
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=55.34 E-value=1.7e+02 Score=26.82 Aligned_cols=40 Identities=8% Similarity=0.075 Sum_probs=19.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 045674 363 LIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGL 402 (650)
Q Consensus 363 l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 402 (650)
++..+...|+++++..+++++...+...+..-.+.+..+|
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvay 46 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAY 46 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHH
Confidence 4555555566666666666665554444444444444444
No 462
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.20 E-value=3.1e+02 Score=29.80 Aligned_cols=102 Identities=10% Similarity=0.036 Sum_probs=63.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 045674 154 IDCLALCGDVDRVRLVFNELKEKGFLM---TVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVNS 230 (650)
Q Consensus 154 ~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 230 (650)
+.-+.+.+.+++|+...+..... .+ ....+...+..+.-.|++++|-...-+|... +..-|..-...+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 44556777788888777665532 22 3445777888888888888888888777654 555566555555555
Q ss_pred CChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHH
Q 045674 231 MFIESSELVFKVMENGKVGPDVVTYNTMIKGYCK 264 (650)
Q Consensus 231 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 264 (650)
++... ++.-+.......+...|..++..+..
T Consensus 437 ~~l~~---Ia~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 DQLTD---IAPYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccch---hhccCCCCCcccCchHHHHHHHHHHH
Confidence 55433 33333332222345667777776665
No 463
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=54.28 E-value=1.1e+02 Score=24.28 Aligned_cols=97 Identities=18% Similarity=0.051 Sum_probs=0.0
Q ss_pred HHHHHHHHHHH--HhcCCHHHHHHHHHHHhh----------CCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--
Q 045674 532 AASFRALSIGL--CLSGKVARACKILDELAP----------KGII--PETAFEDMITCLCKTGRIKEACKLADGIVDR-- 595 (650)
Q Consensus 532 ~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~----------~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 595 (650)
...|..|..+- ...|-+++|..-..++.+ .+.. |.-.+..|..++...|++++++.-.+.++.-
T Consensus 7 a~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFN 86 (144)
T PF12968_consen 7 AMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFN 86 (144)
T ss_dssp HHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHh
Q ss_pred ---------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045674 596 ---------EREIPGKIRTALINALRKAGNADLAIKLMHSKIG 629 (650)
Q Consensus 596 ---------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 629 (650)
| +.-..+...-+.++-..|+.++|...|+.+-+
T Consensus 87 RRGEL~qdeG-klWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 87 RRGELHQDEG-KLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HH--TTSTHH-HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred hccccccccc-hhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
No 464
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=53.68 E-value=2.6e+02 Score=32.30 Aligned_cols=157 Identities=19% Similarity=0.160 Sum_probs=97.3
Q ss_pred HHHHHcCCHHHHHH------HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-------HHcCCCCCHHHHH
Q 045674 435 DGLGKAGRVDEAEE------LFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRM-------EDEGCDQTVYTYT 501 (650)
Q Consensus 435 ~~~~~~~~~~~A~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~~~~~~~~~ 501 (650)
......|.+.+|.+ ++......-.+.....|..+...+.+.|+.++|+..-.+. ......-+...|.
T Consensus 940 q~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~ 1019 (1236)
T KOG1839|consen 940 QEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYG 1019 (1236)
T ss_pred hhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhh
Confidence 33444556666665 5553333223566678888899999999999988765443 2222223445566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhhC-----CCC---cH
Q 045674 502 ILINGMFKEHRNEEALKLWDMMIDK-----GI-TPTAA-SFRALSIGLCLSGKVARACKILDELAPK-----GII---PE 566 (650)
Q Consensus 502 ~l~~~~~~~~~~~~A~~~~~~~~~~-----~~-~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~---~~ 566 (650)
.+.......++...|...+.+.... |. .|... ++..+...+...++++.|.++++.+... ++. ..
T Consensus 1020 nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~ 1099 (1236)
T KOG1839|consen 1020 NLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETA 1099 (1236)
T ss_pred HHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhh
Confidence 6665556677888888877776642 32 44444 3455555555668999999999988753 222 44
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Q 045674 567 TAFEDMITCLCKTGRIKEACKLADG 591 (650)
Q Consensus 567 ~~~~~l~~~~~~~g~~~~A~~~~~~ 591 (650)
..+..+++.+...+++..|....+.
T Consensus 1100 ~~~~~~a~l~~s~~dfr~al~~ek~ 1124 (1236)
T KOG1839|consen 1100 LSYHALARLFESMKDFRNALEHEKV 1124 (1236)
T ss_pred hHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 5566677777777777666554443
No 465
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=53.56 E-value=2.1e+02 Score=27.46 Aligned_cols=117 Identities=17% Similarity=0.232 Sum_probs=55.2
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 045674 476 GKLDEALALFKRMEDEGCDQTVYTYTILINGMFK------EHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVA 549 (650)
Q Consensus 476 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 549 (650)
+-++++..++++....+. |........|.++.. .-+|.....+|+-+....+.|-.. +|- .-+.....-.+
T Consensus 270 ~lI~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apSPvV~-LNR-AVAla~~~Gp~ 346 (415)
T COG4941 270 ALIDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPSPVVT-LNR-AVALAMREGPA 346 (415)
T ss_pred HHHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCCCeEe-ehH-HHHHHHhhhHH
Confidence 345666666666666544 555555555554431 224555555555555543333221 111 11222233344
Q ss_pred HHHHHHHHHhhCCCC-c-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 045674 550 RACKILDELAPKGII-P-ETAFEDMITCLCKTGRIKEACKLADGIVDR 595 (650)
Q Consensus 550 ~A~~~~~~~~~~~~~-~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 595 (650)
.++...+.+...+-- . ...+..-+..+.+.|+.++|...|++++..
T Consensus 347 agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~L 394 (415)
T COG4941 347 AGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIAL 394 (415)
T ss_pred hHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHh
Confidence 555555555443211 1 122233445555566666666666665554
No 466
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.34 E-value=2.9e+02 Score=28.86 Aligned_cols=90 Identities=7% Similarity=0.026 Sum_probs=57.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHhhCCCC---cHHHH-HHHHHHHHHc
Q 045674 505 NGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLC-LSGKVARACKILDELAPKGII---PETAF-EDMITCLCKT 579 (650)
Q Consensus 505 ~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~---~~~~~-~~l~~~~~~~ 579 (650)
..+.+.|.+..|.++.+.+.+..+.-|+.....++..|. +..+|+--+++++.....+.- +.-.| .+++..|...
T Consensus 350 ~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~ 429 (665)
T KOG2422|consen 350 QSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLRK 429 (665)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHhc
Confidence 345678999999999988888766667777777777664 677888888888877543321 22222 3355555554
Q ss_pred CC---HHHHHHHHHHHHH
Q 045674 580 GR---IKEACKLADGIVD 594 (650)
Q Consensus 580 g~---~~~A~~~~~~~~~ 594 (650)
.. -+.|...+.++++
T Consensus 430 ~~~~~rqsa~~~l~qAl~ 447 (665)
T KOG2422|consen 430 NEEDDRQSALNALLQALK 447 (665)
T ss_pred CChhhHHHHHHHHHHHHH
Confidence 44 3455555555544
No 467
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=53.04 E-value=50 Score=22.51 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=11.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 045674 362 ALIDSYAKLGSMNEAINIFERMK 384 (650)
Q Consensus 362 ~l~~~~~~~~~~~~A~~~~~~~~ 384 (650)
.++.+|...|++++|.+++.++.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 34445555555555555554443
No 468
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=52.62 E-value=1.1e+02 Score=23.89 Aligned_cols=20 Identities=20% Similarity=0.353 Sum_probs=12.4
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 045674 506 GMFKEHRNEEALKLWDMMID 525 (650)
Q Consensus 506 ~~~~~~~~~~A~~~~~~~~~ 525 (650)
.+...|+.-+|+++.++++.
T Consensus 5 ~~~~rGnhiKAL~iied~i~ 24 (111)
T PF04781_consen 5 DYFARGNHIKALEIIEDLIS 24 (111)
T ss_pred HHHHccCHHHHHHHHHHHHH
Confidence 45566666666666666663
No 469
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=52.31 E-value=2.5e+02 Score=27.85 Aligned_cols=53 Identities=15% Similarity=-0.043 Sum_probs=29.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHH--cCCHHHHHHHHHH
Q 045674 435 DGLGKAGRVDEAEELFEEMVEKGCPRDSY----CYNVLIDALAK--CGKLDEALALFKR 487 (650)
Q Consensus 435 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~--~g~~~~A~~~~~~ 487 (650)
..+.+.+++..|.++|+++.....+++.. .+..+..+|.. .-++++|.+.++.
T Consensus 138 r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 138 RRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 34556677777777777777764333332 23334444433 3455666666664
No 470
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=51.81 E-value=83 Score=29.08 Aligned_cols=23 Identities=22% Similarity=0.262 Sum_probs=12.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHh
Q 045674 537 ALSIGLCLSGKVARACKILDELA 559 (650)
Q Consensus 537 ~l~~~~~~~g~~~~A~~~~~~~~ 559 (650)
.++.-|.+.|++++|.++|+.+.
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~ 205 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAA 205 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 34444555555555555555553
No 471
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=51.04 E-value=3e+02 Score=31.88 Aligned_cols=158 Identities=13% Similarity=0.060 Sum_probs=100.3
Q ss_pred HHHHHHcCCHHHHHH------HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH---H--CCCC--CCHHHH
Q 045674 469 IDALAKCGKLDEALA------LFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMI---D--KGIT--PTAASF 535 (650)
Q Consensus 469 ~~~~~~~g~~~~A~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~--~~~~--p~~~~~ 535 (650)
.......|.+.++.+ ++......-.......|..|...+.+.|+.++|+..-.+.. + .|.. -+...|
T Consensus 939 gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y 1018 (1236)
T KOG1839|consen 939 GQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAY 1018 (1236)
T ss_pred hhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHh
Confidence 334445566666666 55533222223456678888888889999999988766543 1 2333 133455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhC-----CC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC----C---CC
Q 045674 536 RALSIGLCLSGKVARACKILDELAPK-----GI---IPETAFEDMITCLCKTGRIKEACKLADGIVDRER----E---IP 600 (650)
Q Consensus 536 ~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~---~~ 600 (650)
..+.......++...|...+.++... ++ ....++..+...+...++++.|.++.+.+..... + ..
T Consensus 1019 ~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~ 1098 (1236)
T KOG1839|consen 1019 GNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELET 1098 (1236)
T ss_pred hHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhh
Confidence 66666666777888888888877642 23 2345566777777788899999999998876421 1 23
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 045674 601 GKIRTALINALRKAGNADLAIKLMHS 626 (650)
Q Consensus 601 ~~~~~~l~~~~~~~g~~~~A~~~~~~ 626 (650)
...+..++......+++..|....+.
T Consensus 1099 ~~~~~~~a~l~~s~~dfr~al~~ek~ 1124 (1236)
T KOG1839|consen 1099 ALSYHALARLFESMKDFRNALEHEKV 1124 (1236)
T ss_pred hhHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 45566666666666666666555443
No 472
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=50.81 E-value=32 Score=24.59 Aligned_cols=33 Identities=21% Similarity=0.236 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 045674 548 VARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDR 595 (650)
Q Consensus 548 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 595 (650)
.++|..++.++.+. -..|++++|+++|..+++.
T Consensus 3 l~kai~Lv~~A~~e---------------D~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 3 LERAHFLVTQAFDE---------------DEKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HHHHHHHHHHHHHh---------------hHhhhHHHHHHHHHHHHHH
Confidence 45566666666543 5778899999998888764
No 473
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=50.78 E-value=2e+02 Score=26.34 Aligned_cols=19 Identities=11% Similarity=0.176 Sum_probs=10.7
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 045674 612 RKAGNADLAIKLMHSKIGV 630 (650)
Q Consensus 612 ~~~g~~~~A~~~~~~~~~~ 630 (650)
-..|+.++|+++.+++.+.
T Consensus 180 ei~~~~~~A~~ia~~afd~ 198 (236)
T PF00244_consen 180 EILNDPEKAIEIAKQAFDE 198 (236)
T ss_dssp HTSS-HHHHHHHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHHH
Confidence 3456666666666665554
No 474
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=49.10 E-value=1.8e+02 Score=25.36 Aligned_cols=25 Identities=16% Similarity=0.149 Sum_probs=16.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC
Q 045674 502 ILINGMFKEHRNEEALKLWDMMIDK 526 (650)
Q Consensus 502 ~l~~~~~~~~~~~~A~~~~~~~~~~ 526 (650)
.++..|.+..++.+..++++.+.+.
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el 161 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHEL 161 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566777777777777777654
No 475
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=48.41 E-value=46 Score=20.03 Aligned_cols=29 Identities=14% Similarity=0.085 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045674 602 KIRTALINALRKAGNADLAIKLMHSKIGV 630 (650)
Q Consensus 602 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 630 (650)
.++..|+..-...++++.|.+-|+++++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 46778899999999999999999998874
No 476
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.43 E-value=3.3e+02 Score=27.81 Aligned_cols=157 Identities=11% Similarity=-0.004 Sum_probs=93.5
Q ss_pred HcCCHHHHHHHHHHHHHcC-CCCCHH--------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHH
Q 045674 439 KAGRVDEAEELFEEMVEKG-CPRDSY--------CYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTY--TILINGM 507 (650)
Q Consensus 439 ~~~~~~~A~~~~~~~~~~~-~~~~~~--------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~l~~~~ 507 (650)
-.|+..+|++-+..|.+-. -.|.+. .-..++..++.-+.++.|+.-|....+.--..|...+ ..+...|
T Consensus 335 v~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~Y 414 (629)
T KOG2300|consen 335 VRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISY 414 (629)
T ss_pred HhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHH
Confidence 4688999998888887631 123311 1122333344568899999888887765333344333 2345567
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCC-CH-----HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC------cHHHHHHHHHH
Q 045674 508 FKEHRNEEALKLWDMMIDKGITP-TA-----ASFRALSIGLCLSGKVARACKILDELAPKGII------PETAFEDMITC 575 (650)
Q Consensus 508 ~~~~~~~~A~~~~~~~~~~~~~p-~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~ 575 (650)
.+.|+-+.-.++++.+--.+-.+ .. ..+...+-.....+++.||..++.+..+..-. ..-.+..|+.+
T Consensus 415 L~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v 494 (629)
T KOG2300|consen 415 LRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHV 494 (629)
T ss_pred HHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHH
Confidence 78888777666666543221111 11 11122222335789999999999888764311 12234456777
Q ss_pred HHHcCCHHHHHHHHHHHHHc
Q 045674 576 LCKTGRIKEACKLADGIVDR 595 (650)
Q Consensus 576 ~~~~g~~~~A~~~~~~~~~~ 595 (650)
+...|+..++.+..+-..+.
T Consensus 495 ~lslgn~~es~nmvrpamql 514 (629)
T KOG2300|consen 495 FLSLGNTVESRNMVRPAMQL 514 (629)
T ss_pred HHHhcchHHHHhccchHHHH
Confidence 88889999998887766543
No 477
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=47.39 E-value=1.5e+02 Score=27.32 Aligned_cols=63 Identities=11% Similarity=0.104 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045674 566 ETAFEDMITCLCKTGRIKEACKLADGIVDRE-----REIPGKIRTALINALRKAGNADLAIKLMHSKI 628 (650)
Q Consensus 566 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 628 (650)
..+...++..|...|++++|.++++.+...- ......+...+..++.+.|+.++.+.+.-+++
T Consensus 178 ~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 178 SYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 4455678999999999999999999986431 01234566778888899999999888766654
No 478
>PRK09857 putative transposase; Provisional
Probab=47.18 E-value=2.2e+02 Score=27.13 Aligned_cols=65 Identities=14% Similarity=0.192 Sum_probs=41.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 045674 535 FRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREI 599 (650)
Q Consensus 535 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 599 (650)
+..+++.....|+.++-.++++.+.+..+...+....+++-+...|.-++++++.++++..|+..
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~ 273 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAERSPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPL 273 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 33444444556666666666666665544444555677777777777777888888888777443
No 479
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=46.98 E-value=95 Score=28.77 Aligned_cols=55 Identities=13% Similarity=-0.024 Sum_probs=31.6
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 045674 541 GLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDR 595 (650)
Q Consensus 541 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 595 (650)
.+.+.++++.|....++.+..+|.++.-+..-|.+|.+.|.+.-|++-++..++.
T Consensus 190 ~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~ 244 (269)
T COG2912 190 ALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEH 244 (269)
T ss_pred HHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHh
Confidence 3455556666666666666655555555555555666666666665555554443
No 480
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=46.13 E-value=2.4e+02 Score=25.83 Aligned_cols=63 Identities=8% Similarity=-0.102 Sum_probs=50.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 045674 534 SFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDRE 596 (650)
Q Consensus 534 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 596 (650)
.+..+.+++...|++-++++.-.+++...+.+..+|..-+.+....=+.++|.+-+.++++.+
T Consensus 232 LllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 232 LLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 345566777788888888888888888888888888888888887778888888888888764
No 481
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=45.51 E-value=2.7e+02 Score=30.21 Aligned_cols=95 Identities=8% Similarity=0.070 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHhhCCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-------------CHHHHHHHHHHH
Q 045674 547 KVARACKILDELAPKGII--PETAFEDMITCLCKTGRIKEACKLADGIVDREREI-------------PGKIRTALINAL 611 (650)
Q Consensus 547 ~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------------~~~~~~~l~~~~ 611 (650)
..++...++....+..-. +...+..++... .|+...|+.+++++...+... +......++.++
T Consensus 179 s~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL 256 (709)
T PRK08691 179 TAQQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGI 256 (709)
T ss_pred CHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHH
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCChhhhhhhhcc
Q 045674 612 RKAGNADLAIKLMHSKIGVGYDRMGSIKRRVKF 644 (650)
Q Consensus 612 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 644 (650)
.. |+...++.+++++++.|+.+...+..++.+
T Consensus 257 ~~-~d~~~al~~l~~L~~~G~d~~~~l~~L~~~ 288 (709)
T PRK08691 257 IN-QDGAALLAKAQEMAACAVGFDNALGELAIL 288 (709)
T ss_pred Hc-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHH
No 482
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=45.35 E-value=1.5e+02 Score=25.63 Aligned_cols=67 Identities=12% Similarity=0.214 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHhCCCCC-------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 045674 268 TQKAMEKFRAMEARNVQP-------DKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGK 337 (650)
Q Consensus 268 ~~~A~~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 337 (650)
.+.|+.+|+.+.+.-..| ....-...+..|.+.|.+++|.++++.... .++......-+...++..+
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~~Kd 158 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIREKD 158 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHHccc
No 483
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=44.95 E-value=2.9e+02 Score=26.50 Aligned_cols=39 Identities=15% Similarity=0.091 Sum_probs=18.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHH----HCCCCCCHHHHHHH
Q 045674 185 ANSLIKSFGGLGMVEELLWVWRSMK----ENGIEPSLYTYNFL 223 (650)
Q Consensus 185 ~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~~~~~l 223 (650)
+.....-|++-|+-+.|++.+++.. ..|...|+..+..-
T Consensus 107 ~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iR 149 (393)
T KOG0687|consen 107 MLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIR 149 (393)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHH
Confidence 4444445555555555555444332 23444454444433
No 484
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=44.83 E-value=1.2e+02 Score=25.10 Aligned_cols=63 Identities=14% Similarity=0.191 Sum_probs=0.0
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 045674 273 EKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVG 336 (650)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 336 (650)
++...+.+.|.+.+. --..++..+...++.-.|.++++++.+.+...+..|...-+..+...|
T Consensus 7 ~~~~~lk~~glr~T~-qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 7 DAIERLKEAGLRLTP-QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHcCCCcCH-HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
No 485
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=44.03 E-value=1.5e+02 Score=22.98 Aligned_cols=82 Identities=15% Similarity=0.037 Sum_probs=45.1
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 045674 509 KEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKL 588 (650)
Q Consensus 509 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 588 (650)
.....++|..+.+-....+-. .......-+..+.+.|+|++| +.........|-..|.. -+-++.|-.+++...
T Consensus 18 G~HcH~EA~tIa~wL~~~~~~-~E~v~lIr~~sLmNrG~Yq~A---Ll~~~~~~~pdL~p~~A--L~a~klGL~~~~e~~ 91 (116)
T PF09477_consen 18 GHHCHQEANTIADWLEQEGEM-EEVVALIRLSSLMNRGDYQEA---LLLPQCHCYPDLEPWAA--LCAWKLGLASALESR 91 (116)
T ss_dssp TTT-HHHHHHHHHHHHHTTTT-HHHHHHHHHHHHHHTT-HHHH---HHHHTTS--GGGHHHHH--HHHHHCT-HHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHhhHHHHHH---HHhcccCCCccHHHHHH--HHHHhhccHHHHHHH
Confidence 455678888888887765432 222222333456778888888 33333332224444443 355788888888888
Q ss_pred HHHHHHcC
Q 045674 589 ADGIVDRE 596 (650)
Q Consensus 589 ~~~~~~~~ 596 (650)
+.++...+
T Consensus 92 l~rla~~g 99 (116)
T PF09477_consen 92 LTRLASSG 99 (116)
T ss_dssp HHHHCT-S
T ss_pred HHHHHhCC
Confidence 77776444
No 486
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=43.65 E-value=3e+02 Score=26.36 Aligned_cols=46 Identities=11% Similarity=0.259 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 045674 148 ECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGG 194 (650)
Q Consensus 148 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 194 (650)
..+..++.+|+.-.-.++|+..+++..+.| ..+...|..=++.+.+
T Consensus 300 ~l~kq~l~~~A~d~aieD~i~~L~~~~r~G-~i~l~~yLr~VR~lsR 345 (365)
T KOG2391|consen 300 PLYKQILECYALDLAIEDAIYSLGKSLRDG-VIDLDQYLRHVRLLSR 345 (365)
T ss_pred hHHHHHHHhhhhhhHHHHHHHHHHHHHhcC-eeeHHHHHHHHHHHHH
Confidence 346677888877777778888888888877 4466666555555544
No 487
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=43.28 E-value=1.9e+02 Score=26.20 Aligned_cols=26 Identities=27% Similarity=0.194 Sum_probs=18.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCC
Q 045674 433 LIDGLGKAGRVDEAEELFEEMVEKGC 458 (650)
Q Consensus 433 l~~~~~~~~~~~~A~~~~~~~~~~~~ 458 (650)
++--+...|+++.|+++.+.++++|.
T Consensus 89 ~mvW~~D~Gd~~~AL~ia~yAI~~~l 114 (230)
T PHA02537 89 VMVWRFDIGDFDGALEIAEYALEHGL 114 (230)
T ss_pred eeeeeeeccCHHHHHHHHHHHHHcCC
Confidence 33445677888888888888887763
No 488
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=42.91 E-value=3.5e+02 Score=26.88 Aligned_cols=180 Identities=12% Similarity=0.060 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc---------CCCc
Q 045674 287 KITYMTLIQACYLEGDFDSCLSLYHEMDE--KGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRR---------GCQP 355 (650)
Q Consensus 287 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---------~~~~ 355 (650)
...+.-+..-|...|+++.|++.|.+.+. .........+..++...+-.|+|.....+..+..+. .+.+
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~ 229 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPA 229 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCc
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC------CCHHhHHHHHHHHHhcCCHHHHHHHH-HHHHHCCCCCCHH
Q 045674 356 NVAIYTALIDSYAKLGSMNEAINIFERMKYEGVE------PDEVTYGVIISGLCKNERLEEAMQYF-EFCRANGVAVNAM 428 (650)
Q Consensus 356 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------p~~~~~~~l~~~~~~~g~~~~a~~~~-~~~~~~~~~~~~~ 428 (650)
....+..|.....+ ++..|.+.|-........ |...+....+.+++--++-+--+.+. ...-+.-.+..+.
T Consensus 230 kl~C~agLa~L~lk--kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel~Pq 307 (466)
T KOG0686|consen 230 KLKCAAGLANLLLK--KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLELEPQ 307 (466)
T ss_pred chHHHHHHHHHHHH--HHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhcChH
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCCHHHHHHHHH
Q 045674 429 FYSSLIDGLGKAGRVDEAEELFEEMVEK-----GCPRDSYCYNVLID 470 (650)
Q Consensus 429 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~l~~ 470 (650)
....+...| .+++...+++++++... -+.|.+.+...+|+
T Consensus 308 lr~il~~fy--~sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~IR 352 (466)
T KOG0686|consen 308 LREILFKFY--SSKYASCLELLREIKPRLLLDMYLAPHVDNLYSLIR 352 (466)
T ss_pred HHHHHHHHh--hhhHHHHHHHHHHhccceeechhcchhHHHHHHHHH
No 489
>PRK12798 chemotaxis protein; Reviewed
Probab=42.34 E-value=3.7e+02 Score=26.93 Aligned_cols=50 Identities=12% Similarity=0.246 Sum_probs=24.6
Q ss_pred cCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHH-HhcCCHHHHHHHHHHHH
Q 045674 335 VGKCIEGHAIFESMIRRGCQPNVAIYTALIDSY-AKLGSMNEAINIFERMK 384 (650)
Q Consensus 335 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~~~ 384 (650)
.|+..++.+.+..+.....++....|-.|+.+- ....+..+|+++|+...
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aR 175 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQAR 175 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHH
Confidence 455555555555555444444444444444432 23344555555555544
No 490
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=41.49 E-value=4.2e+02 Score=28.53 Aligned_cols=109 Identities=13% Similarity=0.163 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 045674 512 RNEEALKLWDMMI-DKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLAD 590 (650)
Q Consensus 512 ~~~~A~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 590 (650)
..++....+.+.. +.|+..+...+..++. ...|+...|+.+++++... |.-.--.+..+
T Consensus 184 s~eei~~~L~~i~~~egi~ie~~AL~~La~--~s~GslR~al~lLdq~ia~------------------~~~~It~~~V~ 243 (618)
T PRK14951 184 APETVLEHLTQVLAAENVPAEPQALRLLAR--AARGSMRDALSLTDQAIAF------------------GSGQLQEAAVR 243 (618)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHh------------------cCCCcCHHHHH
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCChhhhhhhhcc
Q 045674 591 GIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYDRMGSIKRRVKF 644 (650)
Q Consensus 591 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 644 (650)
+++ + ..+......++.++.. |+...++.+++++.+.|..+...+..+..+
T Consensus 244 ~~L--g-~~~~~~i~~LldaL~~-~d~~~al~~l~~l~~~G~~~~~il~~l~~~ 293 (618)
T PRK14951 244 QML--G-SVDRSHVFRLIDALAQ-GDGRTVVETADELRLNGLSAASTLEEMAAV 293 (618)
T ss_pred HHH--c-CCCHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
No 491
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=40.72 E-value=67 Score=23.13 Aligned_cols=19 Identities=32% Similarity=0.326 Sum_probs=15.0
Q ss_pred HHHcCCHHHHHHHHHHHHH
Q 045674 576 LCKTGRIKEACKLADGIVD 594 (650)
Q Consensus 576 ~~~~g~~~~A~~~~~~~~~ 594 (650)
+-..|++++|+.+|.++++
T Consensus 16 ~D~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 16 LDQEGRFQEALVCYQEGID 34 (77)
T ss_pred HHHhccHHHHHHHHHHHHH
Confidence 4688888888888887764
No 492
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=40.64 E-value=2.8e+02 Score=25.06 Aligned_cols=101 Identities=16% Similarity=0.046 Sum_probs=57.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 045674 459 PRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGC-DQTVYTY--TILINGMFKEHRNEEALKLWDMMIDKGITPTAASF 535 (650)
Q Consensus 459 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~--~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~ 535 (650)
.....-++.|+.-|.-...+.+|.+.|..-..-.. ..+..++ ..-+......|+.++|++......-.-+.-|...+
T Consensus 23 ~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l~ 102 (228)
T KOG2659|consen 23 SVMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRELF 102 (228)
T ss_pred CcchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchhHH
Confidence 45556667777666666666666666654322211 1233333 33455667888888888877776533233344333
Q ss_pred HHHHHH----HHhcCCHHHHHHHHHHHh
Q 045674 536 RALSIG----LCLSGKVARACKILDELA 559 (650)
Q Consensus 536 ~~l~~~----~~~~g~~~~A~~~~~~~~ 559 (650)
..+... +.+.|..++|+++.+.=.
T Consensus 103 F~Lq~q~lIEliR~~~~eeal~F~q~~L 130 (228)
T KOG2659|consen 103 FHLQQLHLIELIREGKTEEALEFAQTKL 130 (228)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHc
Confidence 333221 356777888887776544
No 493
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=40.49 E-value=1.9e+02 Score=30.54 Aligned_cols=76 Identities=14% Similarity=0.147 Sum_probs=52.7
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChh------HHHHHHHHHhcCCCCCChhhHHH
Q 045674 186 NSLIKSFGGLGMVEELLWVWRSMKEN--GIEPSLYTYNFLMNGLVNSMFIE------SSELVFKVMENGKVGPDVVTYNT 257 (650)
Q Consensus 186 ~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~------~A~~~~~~~~~~~~~~~~~~~~~ 257 (650)
.+|..+|...|++..+.++++.+... |-+.-...+|..++.+.+.|.++ .|.+.+++.. +.-|..||..
T Consensus 32 ~sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~al 108 (1117)
T COG5108 32 ASLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYAL 108 (1117)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHH
Confidence 37889999999999999999988865 22223456788888888888764 3444444444 2346777777
Q ss_pred HHHHHHH
Q 045674 258 MIKGYCK 264 (650)
Q Consensus 258 l~~~~~~ 264 (650)
|+..-..
T Consensus 109 l~~~sln 115 (1117)
T COG5108 109 LCQASLN 115 (1117)
T ss_pred HHHhhcC
Confidence 7665443
No 494
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=40.26 E-value=69 Score=22.93 Aligned_cols=20 Identities=15% Similarity=0.076 Sum_probs=15.9
Q ss_pred HHhcCCHHHHHHHHHHHhhC
Q 045674 542 LCLSGKVARACKILDELAPK 561 (650)
Q Consensus 542 ~~~~g~~~~A~~~~~~~~~~ 561 (650)
--..|++++|.++|..+++.
T Consensus 16 eD~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 16 EDEKGNAEEAIELYTEAVEL 35 (75)
T ss_pred hhHhhhHHHHHHHHHHHHHH
Confidence 35678999999999888764
No 495
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=39.91 E-value=62 Score=30.44 Aligned_cols=28 Identities=32% Similarity=0.419 Sum_probs=13.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 045674 467 VLIDALAKCGKLDEALALFKRMEDEGCD 494 (650)
Q Consensus 467 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 494 (650)
.-|..-.+.||+++|+.++++..+.|..
T Consensus 262 ~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 262 QAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 4444444555555555555555554443
No 496
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=39.27 E-value=4.8e+02 Score=27.38 Aligned_cols=109 Identities=14% Similarity=0.145 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 045674 512 RNEEALKLWDMMI-DKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLAD 590 (650)
Q Consensus 512 ~~~~A~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 590 (650)
..++....+.... +.|+..+...+..++... .|+...|..+++++... |.-.--.+...
T Consensus 179 ~~~~i~~~l~~il~~egi~~~~~al~~ia~~s--~GslR~al~lLdq~ia~------------------~~~~It~~~V~ 238 (509)
T PRK14958 179 PPLQIAAHCQHLLKEENVEFENAALDLLARAA--NGSVRDALSLLDQSIAY------------------GNGKVLIADVK 238 (509)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCcHHHHHHHHHHHHhc------------------CCCCcCHHHHH
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCChhhhhhhhcc
Q 045674 591 GIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYDRMGSIKRRVKF 644 (650)
Q Consensus 591 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 644 (650)
.++ + ..+......++.++.. |+.+.+...++.+.+.|..+...+..++.+
T Consensus 239 ~~l--g-~~~~~~i~~ll~al~~-~d~~~~l~~~~~l~~~g~~~~~il~~l~~~ 288 (509)
T PRK14958 239 TML--G-TIEPLLLFDILEALAA-KAGDRLLGCVTRLVEQGVDFSNALADLLSL 288 (509)
T ss_pred HHH--C-CCCHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
No 497
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=38.91 E-value=3.7e+02 Score=25.99 Aligned_cols=53 Identities=21% Similarity=0.256 Sum_probs=27.4
Q ss_pred HhcCCHHHHHHHHHHHHHC---CCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHhh
Q 045674 508 FKEHRNEEALKLWDMMIDK---GITPTAASF--RALSIGLCLSGKVARACKILDELAP 560 (650)
Q Consensus 508 ~~~~~~~~A~~~~~~~~~~---~~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~ 560 (650)
-+.++.++|+++++++.+. .-.|+...+ ..++.++...|+..++.+.+++..+
T Consensus 86 ~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 86 EQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3455666666666666532 223344333 2334444555666666666655544
No 498
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=38.27 E-value=5.9e+02 Score=28.17 Aligned_cols=470 Identities=11% Similarity=0.079 Sum_probs=0.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHh
Q 045674 152 SLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSL-IKSFGGLGMVEELLWVWRSMKENGI-EPSLYTYNFLMNGLVN 229 (650)
Q Consensus 152 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~ 229 (650)
.++.-+.++|+.+.|.+++.+.... .+-...|-.. ..+|.++-+...=.++--++... + ..+..-|...+-...-
T Consensus 330 ~~vyy~lR~G~lk~A~~~l~e~~~~--~~~l~~~f~~y~~A~~~~~~~~le~qlrl~~~~~-l~~~~~DpyK~AvY~iig 406 (835)
T KOG2168|consen 330 PLVYYLLRCGDLKAASQFLNENKDF--FEKLAELFPTYFNAYAKNLSSKLEKQLRLRLRSE-LGRNSTDPYKLAVYKIIG 406 (835)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHHHHHHhhhcCCCccccHHHHHHHHHH-hccccCChHHHHHHHHHh
Q ss_pred cCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCChhH----------HHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 045674 230 SMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQK----------AMEKFRAMEARNVQPDKITYMTLIQACYL 299 (650)
Q Consensus 230 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----------A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 299 (650)
..++..-..-+-.-. +-..|--|+-.....+..+. -..++...-..-..++...-.....++.-
T Consensus 407 ~cd~~~~~~ev~~ti------ED~LW~kL~~ir~~~~~sds~~~~~~~~~~~~~il~~YG~sYFt~ng~~p~~Yf~~LlL 480 (835)
T KOG2168|consen 407 GCDLRRDLPEVADTI------EDFLWFKLSLIRVDDQGSDSPTDELFLLEDQKDILEAYGESYFTNNGSQPLLYFQVLLL 480 (835)
T ss_pred cCccccccHHHHhHH------HHHHHHHHHheeecCCCCcchHHhhhhHHHHHHHHHHhHHHhhccCCCChHHHHHHHHH
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcC-HHHHHHHHHHHHhcCCHHHHHH
Q 045674 300 EGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPN-VAIYTALIDSYAKLGSMNEAIN 378 (650)
Q Consensus 300 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~ 378 (650)
.|.++.|+..+....... .+...+...+.-+.-.+.-....+-+-.+......+. ..-+..|+.+|.+.-....+..
T Consensus 481 sgqfe~AI~fL~~~~~~~--~dAVH~AI~l~~lglL~~~~s~~~~ll~~d~~d~~k~~~lnf~rLi~~Ytk~fe~~d~~~ 558 (835)
T KOG2168|consen 481 SGQFERAIEFLHREEPNR--IDAVHVAIALAELGLLRTSSSTSQELLSIDPNDPPKSRRLNFARLIIAYTKSFEYTDTRV 558 (835)
T ss_pred HHhHHHHHHHHHhhcCCc--chhHHHHHHHHHhhhhccCCCCCCcccccCCCCCcccccccHHHHHHHHHHHHHhccchh
Q ss_pred HHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHc
Q 045674 379 IFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGK--AGRVDEAEELFEEMVEK 456 (650)
Q Consensus 379 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~~ 456 (650)
.++-..-....+|...-+.++.+.+..=--.+ +-|..+.. .+.+|..-...++.-|.. .....-+.++-+++.+.
T Consensus 559 al~y~~~lr~~~d~q~~~l~l~~v~~lVl~t~--~~f~~iLG-~i~~dG~r~~G~l~~f~~~~~~~~~i~~~vA~~a~~~ 635 (835)
T KOG2168|consen 559 ALQYYYLLRLNKDPQGSNLFLKCVCELVLETE--EEFDLILG-KIKPDGSREPGLLDEFLPLIEDLQKIILEVASEADED 635 (835)
T ss_pred hhheeeeecccCChhHHHHHHHHHHHHHHhcc--ccHHHHhc-ccCCCCCCCcchHhhhccchhhHHHHHHHHHHHHHhc
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHH
Q 045674 457 GCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITP-TAASF 535 (650)
Q Consensus 457 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~ 535 (650)
| .|..-+..|...|+++.|+.+..+.+..-+. .......... +.++......-+-........+ ...|+
T Consensus 636 G------~~~~sI~LY~lag~yd~al~link~LS~~l~-~~~~~~~n~e---rl~~La~~~~~~y~~~~~~~~~~~~~t~ 705 (835)
T KOG2168|consen 636 G------LFEDAILLYHLAGDYDKALELINKLLSQVLH-SPTLGQSNKE---RLGDLALSMNDIYESNKGDSAKVVVKTL 705 (835)
T ss_pred C------CHHHHHHHHHHhhhhhHHHHHHHHHHHHHHh-hcccCCcchh---hHHHHHHHHHHHHHhccCcchhhHHHHH
Q ss_pred HHHHHHH-----HhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 045674 536 RALSIGL-----CLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINA 610 (650)
Q Consensus 536 ~~l~~~~-----~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 610 (650)
..|...+ +..|++++|+.+++...-. |.++.-...+.....+.+ .+-+++...++..-...=...+..+-..
T Consensus 706 ~lLl~~~~~f~~y~~~~~e~aL~~le~l~Li-P~~~~~v~~~~~~~~~~~--~e~~~~lp~~l~~tm~i~~~~~~~lk~~ 782 (835)
T KOG2168|consen 706 SLLLDLVSFFDLYHNGEWEEALSILEHLDLI-PLDPLSVDEIVANFRNLA--DEFRKVLPDVLLATMDILQIAMKRLKTT 782 (835)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcc-CCChhhhhHHHHHHHhcc--hhhhhcChhHHHHHHHHHHHHHHHHHhc
Q ss_pred HHhcCC-------------HHHHHHHHHHHHHCCCC-Chhhhhhhhcccccc
Q 045674 611 LRKAGN-------------ADLAIKLMHSKIGVGYD-RMGSIKRRVKFRSLV 648 (650)
Q Consensus 611 ~~~~g~-------------~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 648 (650)
+...+. .+.|..+....-..-++ |.....++++.+..|
T Consensus 783 ~~~~s~~~~~~~~~~l~~lr~~a~~i~~~a~~I~yRmps~t~~rL~~~e~~m 834 (835)
T KOG2168|consen 783 YPSSSKRPQRVSETKLDRLRDQARAIVMMAAMIPYRMPSQTNSRLVQLEVSM 834 (835)
T ss_pred cccccccchhhHHHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHhhc
No 499
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=38.11 E-value=4.2e+02 Score=26.39 Aligned_cols=183 Identities=14% Similarity=0.048 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---------CCCC
Q 045674 392 EVTYGVIISGLCKNERLEEAMQYFEFCRAN--GVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEK---------GCPR 460 (650)
Q Consensus 392 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---------~~~~ 460 (650)
...+.-+...|...|+++.|++.|.+.+.. ..+.....|..++..-.-.|+|.....+..+.... .+++
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~ 229 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPA 229 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCc
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCCCHH
Q 045674 461 DSYCYNVLIDALAKCGKLDEALALFKRMEDEGCD------QTVYTYTILINGMFKEHRNEEALKLWDMMI-DKGITPTAA 533 (650)
Q Consensus 461 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~p~~~ 533 (650)
-...+..+.....+ ++..|.+.|-......+. |...+....+.+++--++-+--+.+..... +.-.+..+.
T Consensus 230 kl~C~agLa~L~lk--kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel~Pq 307 (466)
T KOG0686|consen 230 KLKCAAGLANLLLK--KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLELEPQ 307 (466)
T ss_pred chHHHHHHHHHHHH--HHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhcChH
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHH
Q 045674 534 SFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCK 578 (650)
Q Consensus 534 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 578 (650)
....+..-|. +++...+++++++...-.-|...--++-..|-.
T Consensus 308 lr~il~~fy~--sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~ 350 (466)
T KOG0686|consen 308 LREILFKFYS--SKYASCLELLREIKPRLLLDMYLAPHVDNLYSL 350 (466)
T ss_pred HHHHHHHHhh--hhHHHHHHHHHHhccceeechhcchhHHHHHHH
No 500
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=38.03 E-value=1.6e+02 Score=21.68 Aligned_cols=42 Identities=10% Similarity=0.056 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 045674 167 RLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELLWVWRSM 208 (650)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 208 (650)
.++|+-....|+..|..+|..++..+.-+=-++...++++.|
T Consensus 28 ~EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m 69 (88)
T PF12926_consen 28 VELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSM 69 (88)
T ss_pred HHHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHH
Done!