Query 045674
Match_columns 650
No_of_seqs 834 out of 3882
Neff 11.4
Searched_HMMs 29240
Date Mon Mar 25 07:11:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045674.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045674hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 9.2E-42 3.2E-46 363.9 44.0 485 145-642 82-591 (597)
2 2xpi_A Anaphase-promoting comp 100.0 3.9E-41 1.3E-45 359.1 41.4 487 112-612 85-595 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 2E-30 6.8E-35 260.3 49.2 381 226-616 8-388 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 1E-29 3.5E-34 255.1 49.4 380 192-581 9-388 (388)
5 2gw1_A Mitochondrial precursor 100.0 9.1E-28 3.1E-32 250.8 38.6 449 147-605 6-487 (514)
6 2gw1_A Mitochondrial precursor 100.0 2.4E-27 8.3E-32 247.6 40.3 448 182-639 6-487 (514)
7 4g26_A Pentatricopeptide repea 100.0 1.9E-27 6.4E-32 241.7 25.8 204 166-369 9-222 (501)
8 4g26_A Pentatricopeptide repea 100.0 2.8E-27 9.6E-32 240.5 26.4 202 308-509 11-222 (501)
9 3fp2_A TPR repeat-containing p 100.0 2.1E-25 7.1E-30 234.3 40.8 437 147-603 25-498 (537)
10 3fp2_A TPR repeat-containing p 100.0 3.5E-26 1.2E-30 240.2 32.9 440 182-638 25-499 (537)
11 2y4t_A DNAJ homolog subfamily 100.0 1.2E-24 4E-29 223.0 40.2 366 236-633 11-413 (450)
12 2y4t_A DNAJ homolog subfamily 99.9 2.7E-24 9.2E-29 220.4 41.0 388 199-619 9-443 (450)
13 3ieg_A DNAJ homolog subfamily 99.9 2.4E-22 8.2E-27 199.0 40.1 320 286-636 2-341 (359)
14 3ieg_A DNAJ homolog subfamily 99.9 9.5E-22 3.3E-26 194.7 42.3 334 251-614 2-353 (359)
15 2xm6_A Protein corresponding t 99.9 3.8E-20 1.3E-24 191.1 52.7 387 216-633 38-470 (490)
16 2xm6_A Protein corresponding t 99.9 6.8E-20 2.3E-24 189.2 52.4 382 181-594 38-466 (490)
17 2ooe_A Cleavage stimulation fa 99.9 6.5E-20 2.2E-24 191.3 47.4 424 144-632 10-494 (530)
18 3hym_B Cell division cycle pro 99.9 2.6E-21 8.9E-26 189.1 32.7 292 321-618 21-322 (330)
19 3hym_B Cell division cycle pro 99.9 3.8E-21 1.3E-25 188.0 31.2 283 354-642 19-311 (330)
20 1fch_A Peroxisomal targeting s 99.9 2.8E-21 9.7E-26 192.1 25.5 289 335-629 38-358 (368)
21 2ooe_A Cleavage stimulation fa 99.9 5.3E-18 1.8E-22 176.9 49.2 428 108-596 10-493 (530)
22 1xi4_A Clathrin heavy chain; a 99.9 3.1E-17 1.1E-21 176.3 53.9 221 229-490 1088-1308(1630)
23 1fch_A Peroxisomal targeting s 99.9 2.3E-20 7.8E-25 185.5 25.8 307 261-594 34-358 (368)
24 4g1t_A Interferon-induced prot 99.9 5E-19 1.7E-23 182.3 36.7 214 406-633 227-462 (472)
25 1xi4_A Clathrin heavy chain; a 99.9 1.3E-16 4.5E-21 171.5 54.1 411 145-615 983-1415(1630)
26 4eqf_A PEX5-related protein; a 99.9 5E-20 1.7E-24 182.8 24.9 263 359-626 67-352 (365)
27 3cv0_A Peroxisome targeting si 99.9 1.5E-19 5.2E-24 176.2 26.2 262 363-630 27-315 (327)
28 4g1t_A Interferon-induced prot 99.8 3.7E-18 1.3E-22 175.8 36.0 391 181-604 50-467 (472)
29 3mkr_A Coatomer subunit epsilo 99.8 6.5E-19 2.2E-23 167.3 27.8 277 330-624 7-288 (291)
30 4eqf_A PEX5-related protein; a 99.8 8.6E-20 3E-24 181.1 22.0 265 324-593 67-354 (365)
31 3mkr_A Coatomer subunit epsilo 99.8 1.9E-18 6.4E-23 164.1 29.0 259 364-637 6-271 (291)
32 3cv0_A Peroxisome targeting si 99.8 1E-18 3.5E-23 170.4 26.3 279 288-594 22-314 (327)
33 1b89_A Protein (clathrin heavy 99.8 4.5E-18 1.5E-22 164.2 24.2 380 158-590 14-412 (449)
34 1b89_A Protein (clathrin heavy 99.8 1.2E-19 4.1E-24 175.1 11.4 354 228-632 14-387 (449)
35 2pl2_A Hypothetical conserved 99.8 9.4E-18 3.2E-22 152.2 22.9 198 426-628 4-212 (217)
36 3uq3_A Heat shock protein STI1 99.8 1.9E-17 6.3E-22 155.3 25.6 225 393-631 6-237 (258)
37 2h6f_A Protein farnesyltransfe 99.8 2.9E-17 1E-21 161.0 24.2 234 394-633 99-351 (382)
38 3e4b_A ALGK; tetratricopeptide 99.8 3.4E-17 1.2E-21 166.1 24.5 372 226-630 12-421 (452)
39 2pl2_A Hypothetical conserved 99.8 4.7E-17 1.6E-21 147.6 22.6 199 390-593 3-212 (217)
40 3u4t_A TPR repeat-containing p 99.8 9.9E-17 3.4E-21 151.7 25.8 244 396-642 7-262 (272)
41 4e6h_A MRNA 3'-END-processing 99.8 2.6E-14 8.7E-19 149.5 46.0 474 127-644 48-584 (679)
42 3uq3_A Heat shock protein STI1 99.8 7.8E-17 2.7E-21 151.0 24.7 226 358-596 6-237 (258)
43 3e4b_A ALGK; tetratricopeptide 99.8 4.5E-17 1.5E-21 165.2 24.1 350 257-634 8-391 (452)
44 2h6f_A Protein farnesyltransfe 99.8 1E-16 3.5E-21 157.2 25.6 250 357-613 97-365 (382)
45 2q7f_A YRRB protein; TPR, prot 99.8 9.6E-17 3.3E-21 148.9 22.1 215 426-644 22-236 (243)
46 2ho1_A Type 4 fimbrial biogene 99.8 6.8E-16 2.3E-20 144.0 27.7 208 427-637 37-245 (252)
47 3u4t_A TPR repeat-containing p 99.7 5.1E-16 1.7E-20 146.8 26.2 251 359-614 5-268 (272)
48 1ouv_A Conserved hypothetical 99.7 7E-15 2.4E-19 138.9 33.1 226 391-633 5-254 (273)
49 2vq2_A PILW, putative fimbrial 99.7 2.4E-15 8.1E-20 137.5 27.9 208 426-636 7-217 (225)
50 2q7f_A YRRB protein; TPR, prot 99.7 3.6E-16 1.2E-20 145.0 22.0 216 392-612 23-238 (243)
51 1ouv_A Conserved hypothetical 99.7 1.8E-14 6.1E-19 136.1 33.1 224 356-596 5-252 (273)
52 2ho1_A Type 4 fimbrial biogene 99.7 4.9E-15 1.7E-19 138.2 28.5 209 392-604 37-246 (252)
53 3vtx_A MAMA; tetratricopeptide 99.7 2.1E-15 7.2E-20 133.0 23.6 171 460-633 3-173 (184)
54 1xnf_A Lipoprotein NLPI; TPR, 99.7 1E-15 3.4E-20 145.0 22.1 246 369-624 17-269 (275)
55 2vq2_A PILW, putative fimbrial 99.7 1.5E-14 5.1E-19 132.2 27.6 210 392-605 8-220 (225)
56 4a1s_A PINS, partner of inscut 99.7 7.8E-16 2.7E-20 155.2 18.0 204 429-632 128-374 (411)
57 4abn_A Tetratricopeptide repea 99.7 2.3E-15 8E-20 153.6 20.8 212 408-625 84-316 (474)
58 1xnf_A Lipoprotein NLPI; TPR, 99.7 1E-14 3.5E-19 137.9 23.1 227 403-634 16-248 (275)
59 4e6h_A MRNA 3'-END-processing 99.7 8.6E-12 2.9E-16 130.5 46.9 447 106-596 61-571 (679)
60 2ond_A Cleavage stimulation fa 99.7 7.8E-14 2.7E-18 134.0 29.0 222 409-633 33-273 (308)
61 3vtx_A MAMA; tetratricopeptide 99.7 3.3E-14 1.1E-18 125.2 24.2 168 426-596 4-171 (184)
62 3sf4_A G-protein-signaling mod 99.7 4.4E-15 1.5E-19 149.3 20.9 301 320-621 7-367 (406)
63 3spa_A Mtrpol, DNA-directed RN 99.7 3.5E-16 1.2E-20 163.2 12.3 117 252-368 127-247 (1134)
64 3sf4_A G-protein-signaling mod 99.6 5E-15 1.7E-19 149.0 19.5 306 284-589 6-370 (406)
65 3ro2_A PINS homolog, G-protein 99.6 7.7E-15 2.6E-19 143.3 19.8 268 364-632 12-334 (338)
66 4a1s_A PINS, partner of inscut 99.6 5.4E-15 1.8E-19 149.0 17.5 275 290-596 51-373 (411)
67 3spa_A Mtrpol, DNA-directed RN 99.6 9.7E-16 3.3E-20 159.9 11.3 118 392-509 127-248 (1134)
68 3ulq_A Response regulator aspa 99.6 7E-14 2.4E-18 139.2 24.3 231 398-630 109-368 (383)
69 4i17_A Hypothetical protein; T 99.6 6E-14 2.1E-18 128.4 21.6 207 426-642 6-221 (228)
70 4gyw_A UDP-N-acetylglucosamine 99.6 3.1E-14 1.1E-18 150.8 21.1 169 459-630 6-174 (723)
71 4abn_A Tetratricopeptide repea 99.6 4.4E-14 1.5E-18 144.1 21.2 215 373-592 84-318 (474)
72 3ulq_A Response regulator aspa 99.6 1.9E-13 6.4E-18 136.1 24.7 232 363-595 109-368 (383)
73 3ro2_A PINS homolog, G-protein 99.6 9.9E-14 3.4E-18 135.4 21.4 203 394-596 85-333 (338)
74 2ond_A Cleavage stimulation fa 99.6 1.9E-12 6.4E-17 124.4 28.7 218 374-596 33-271 (308)
75 3as5_A MAMA; tetratricopeptide 99.6 2.2E-13 7.6E-18 120.0 20.4 171 462-635 8-178 (186)
76 4i17_A Hypothetical protein; T 99.6 8E-13 2.7E-17 120.9 23.6 209 390-610 5-223 (228)
77 3nf1_A KLC 1, kinesin light ch 99.6 1E-13 3.4E-18 133.7 17.9 239 392-631 27-308 (311)
78 3q15_A PSP28, response regulat 99.5 8E-13 2.7E-17 131.2 24.2 230 398-630 107-365 (378)
79 3nf1_A KLC 1, kinesin light ch 99.5 5.9E-14 2E-18 135.4 14.4 168 428-595 112-307 (311)
80 1hz4_A MALT regulatory protein 99.5 6.9E-12 2.4E-16 124.3 29.5 301 325-633 17-352 (373)
81 4gyw_A UDP-N-acetylglucosamine 99.5 4.8E-13 1.6E-17 141.8 21.5 167 426-595 8-174 (723)
82 3q15_A PSP28, response regulat 99.5 5.5E-12 1.9E-16 125.1 27.4 233 361-595 105-365 (378)
83 3as5_A MAMA; tetratricopeptide 99.5 3.5E-12 1.2E-16 112.2 20.9 167 427-596 8-174 (186)
84 1hz4_A MALT regulatory protein 99.5 1E-11 3.6E-16 123.0 26.2 300 290-596 17-350 (373)
85 3edt_B KLC 2, kinesin light ch 99.4 1.2E-12 4.2E-17 124.1 15.5 228 402-630 11-281 (283)
86 1qqe_A Vesicular transport pro 99.4 5.2E-12 1.8E-16 120.1 17.9 176 372-562 32-229 (292)
87 3qky_A Outer membrane assembly 99.4 1.2E-11 4.2E-16 115.6 19.8 100 426-526 14-126 (261)
88 3dra_A Protein farnesyltransfe 99.4 1.1E-10 3.8E-15 109.5 25.6 224 406-633 47-291 (306)
89 3qky_A Outer membrane assembly 99.4 1.7E-11 5.8E-16 114.6 19.5 208 391-619 14-250 (261)
90 2yhc_A BAMD, UPF0169 lipoprote 99.4 6.2E-11 2.1E-15 107.8 22.4 190 426-634 3-217 (225)
91 3urz_A Uncharacterized protein 99.4 1.2E-11 4E-16 111.0 17.1 128 503-633 60-189 (208)
92 1qqe_A Vesicular transport pro 99.4 2.4E-11 8.2E-16 115.5 20.0 210 407-632 32-271 (292)
93 2pzi_A Probable serine/threoni 99.4 9E-12 3.1E-16 133.0 17.8 171 403-578 402-580 (681)
94 4ga2_A E3 SUMO-protein ligase 99.4 1.5E-12 5.3E-17 109.7 9.5 145 469-616 4-149 (150)
95 2fo7_A Synthetic consensus TPR 99.4 4.7E-11 1.6E-15 98.5 17.9 132 499-632 3-134 (136)
96 3rjv_A Putative SEL1 repeat pr 99.4 9.3E-11 3.2E-15 105.4 21.0 178 445-634 4-201 (212)
97 3dra_A Protein farnesyltransfe 99.3 9E-10 3.1E-14 103.3 27.1 233 371-609 47-301 (306)
98 3qou_A Protein YBBN; thioredox 99.3 3.3E-11 1.1E-15 114.0 17.2 167 459-629 114-283 (287)
99 3edt_B KLC 2, kinesin light ch 99.3 1.8E-11 6E-16 116.0 15.4 228 368-595 12-281 (283)
100 2uy1_A Cleavage stimulation fa 99.3 6.6E-09 2.2E-13 105.7 35.1 125 498-629 287-412 (493)
101 3mv2_B Coatomer subunit epsilo 99.3 2E-09 6.8E-14 99.7 27.7 79 376-455 85-164 (310)
102 3urz_A Uncharacterized protein 99.3 1.9E-10 6.5E-15 103.0 20.4 135 468-608 60-197 (208)
103 2vsy_A XCC0866; transferase, g 99.3 5.8E-11 2E-15 124.7 19.7 165 440-608 2-169 (568)
104 3mv2_B Coatomer subunit epsilo 99.3 5.7E-10 2E-14 103.3 23.7 179 411-596 85-283 (310)
105 2pzi_A Probable serine/threoni 99.3 7.8E-11 2.7E-15 125.8 19.8 174 368-547 402-583 (681)
106 2r5s_A Uncharacterized protein 99.3 3E-11 1E-15 105.2 13.5 162 465-629 9-172 (176)
107 4ga2_A E3 SUMO-protein ligase 99.3 8.3E-12 2.8E-16 105.2 9.3 146 433-581 3-149 (150)
108 2fo7_A Synthetic consensus TPR 99.3 4.1E-10 1.4E-14 92.8 18.2 131 464-596 3-133 (136)
109 2vsy_A XCC0866; transferase, g 99.2 2.9E-10 9.7E-15 119.4 20.4 163 405-571 2-167 (568)
110 3rjv_A Putative SEL1 repeat pr 99.2 9.2E-10 3.2E-14 98.8 20.7 176 410-596 4-198 (212)
111 2yhc_A BAMD, UPF0169 lipoprote 99.2 1.1E-09 3.9E-14 99.4 21.2 186 391-596 3-214 (225)
112 4gco_A Protein STI-1; structur 99.2 2.7E-10 9.4E-15 92.3 14.8 106 533-639 14-119 (126)
113 3gyz_A Chaperone protein IPGC; 99.2 2E-11 6.7E-16 102.2 8.0 104 531-635 35-138 (151)
114 2r5s_A Uncharacterized protein 99.2 1.4E-10 4.9E-15 100.8 13.6 161 430-594 9-172 (176)
115 3qou_A Protein YBBN; thioredox 99.2 3E-10 1E-14 107.4 16.9 165 426-594 116-283 (287)
116 2uy1_A Cleavage stimulation fa 99.2 1.1E-07 3.7E-12 96.7 36.0 125 463-594 287-412 (493)
117 4gco_A Protein STI-1; structur 99.2 5.2E-10 1.8E-14 90.6 15.2 111 498-610 14-124 (126)
118 3q7a_A Farnesyltransferase alp 99.2 6.1E-09 2.1E-13 98.6 24.2 226 405-635 67-335 (349)
119 3dss_A Geranylgeranyl transfer 99.2 1.7E-08 5.8E-13 95.1 27.0 224 410-640 48-314 (331)
120 2vgx_A Chaperone SYCD; alterna 99.2 6.6E-11 2.3E-15 99.2 9.3 101 532-633 21-121 (148)
121 1hh8_A P67PHOX, NCF-2, neutrop 99.2 1.4E-09 4.7E-14 98.0 18.0 128 463-595 7-150 (213)
122 2ifu_A Gamma-SNAP; membrane fu 99.1 3.7E-10 1.3E-14 108.1 13.4 225 369-623 3-254 (307)
123 1a17_A Serine/threonine protei 99.1 2.9E-09 9.9E-14 91.4 17.1 131 497-629 13-145 (166)
124 2c2l_A CHIP, carboxy terminus 99.1 4.8E-10 1.6E-14 105.6 12.9 197 426-631 3-200 (281)
125 2ifu_A Gamma-SNAP; membrane fu 99.1 1.3E-09 4.4E-14 104.3 16.0 224 335-587 4-253 (307)
126 3q7a_A Farnesyltransferase alp 99.1 5.4E-08 1.8E-12 92.1 26.1 234 371-609 68-345 (349)
127 4f3v_A ESX-1 secretion system 99.1 3.9E-09 1.3E-13 96.4 17.1 192 439-633 18-240 (282)
128 3u3w_A Transcriptional activat 99.1 1.9E-08 6.4E-13 95.5 22.7 164 467-630 80-266 (293)
129 2xcb_A PCRH, regulatory protei 99.1 3.2E-10 1.1E-14 94.4 9.2 99 534-633 20-118 (142)
130 3gyz_A Chaperone protein IPGC; 99.1 5.3E-10 1.8E-14 93.4 10.1 104 496-602 35-138 (151)
131 1hh8_A P67PHOX, NCF-2, neutrop 99.1 1.5E-08 5E-13 91.1 19.5 131 429-564 8-153 (213)
132 1p5q_A FKBP52, FK506-binding p 99.0 4.6E-09 1.6E-13 101.6 16.7 97 532-629 196-293 (336)
133 2e2e_A Formate-dependent nitri 99.0 1.8E-09 6.1E-14 93.9 12.5 121 474-596 22-145 (177)
134 2lni_A Stress-induced-phosphop 99.0 5E-09 1.7E-13 85.9 14.4 118 496-615 15-132 (133)
135 2vgx_A Chaperone SYCD; alterna 99.0 1.5E-09 5.1E-14 90.9 11.0 111 484-596 9-119 (148)
136 2qfc_A PLCR protein; TPR, HTH, 99.0 2.7E-08 9.1E-13 94.5 21.1 165 465-629 78-265 (293)
137 3upv_A Heat shock protein STI1 99.0 2.6E-09 8.9E-14 86.8 12.1 98 533-631 5-102 (126)
138 2vyi_A SGTA protein; chaperone 99.0 7E-09 2.4E-13 84.7 14.5 120 496-617 11-130 (131)
139 3u3w_A Transcriptional activat 99.0 5.9E-08 2E-12 92.1 22.9 162 433-595 81-266 (293)
140 3dss_A Geranylgeranyl transfer 99.0 5.6E-08 1.9E-12 91.6 21.7 193 438-634 40-271 (331)
141 1a17_A Serine/threonine protei 99.0 1.9E-08 6.4E-13 86.2 17.2 130 463-594 14-145 (166)
142 1na0_A Designed protein CTPR3; 99.0 1.8E-08 6.2E-13 81.3 16.3 115 497-613 9-123 (125)
143 4gcn_A Protein STI-1; structur 99.0 2.7E-09 9.2E-14 86.6 11.0 102 533-635 9-117 (127)
144 2fbn_A 70 kDa peptidylprolyl i 99.0 9.1E-10 3.1E-14 97.8 8.8 135 497-632 38-188 (198)
145 1hxi_A PEX5, peroxisome target 99.0 5E-09 1.7E-13 84.1 11.5 98 535-633 20-117 (121)
146 2xcb_A PCRH, regulatory protei 99.0 2.7E-09 9.2E-14 88.8 10.2 105 496-602 17-121 (142)
147 3sz7_A HSC70 cochaperone (SGT) 99.0 7.9E-09 2.7E-13 88.4 13.3 107 496-604 10-116 (164)
148 4f3v_A ESX-1 secretion system 99.0 2.6E-08 8.9E-13 91.0 17.3 198 404-607 18-247 (282)
149 2c2l_A CHIP, carboxy terminus 99.0 4.4E-09 1.5E-13 98.9 12.3 196 391-595 3-199 (281)
150 3gw4_A Uncharacterized protein 99.0 1.1E-08 3.8E-13 91.1 14.3 155 475-630 5-176 (203)
151 1elw_A TPR1-domain of HOP; HOP 98.9 2.2E-08 7.7E-13 79.9 14.5 103 533-636 5-107 (118)
152 2e2e_A Formate-dependent nitri 98.9 9.8E-09 3.3E-13 89.2 13.2 123 509-633 22-147 (177)
153 1p5q_A FKBP52, FK506-binding p 98.9 3.1E-08 1.1E-12 95.8 16.9 133 461-594 146-293 (336)
154 1na0_A Designed protein CTPR3; 98.9 6.7E-08 2.3E-12 77.9 16.5 117 462-580 9-125 (125)
155 2lni_A Stress-induced-phosphop 98.9 2.5E-08 8.6E-13 81.6 14.0 121 459-581 13-133 (133)
156 1elw_A TPR1-domain of HOP; HOP 98.9 5.1E-08 1.7E-12 77.7 15.3 112 497-610 4-115 (118)
157 2qfc_A PLCR protein; TPR, HTH, 98.9 2.5E-07 8.5E-12 87.7 22.6 164 430-594 78-265 (293)
158 3q49_B STIP1 homology and U bo 98.9 2.2E-08 7.6E-13 82.6 13.2 99 496-595 8-106 (137)
159 2vyi_A SGTA protein; chaperone 98.9 4.1E-08 1.4E-12 80.0 14.7 120 461-582 11-130 (131)
160 3sz7_A HSC70 cochaperone (SGT) 98.9 3.1E-08 1.1E-12 84.7 13.9 104 462-567 11-114 (164)
161 4gcn_A Protein STI-1; structur 98.9 3.5E-08 1.2E-12 79.9 13.5 108 497-607 8-122 (127)
162 2kck_A TPR repeat; tetratricop 98.9 1.3E-08 4.5E-13 80.4 10.5 102 532-634 6-110 (112)
163 2hr2_A Hypothetical protein; a 98.9 7E-09 2.4E-13 85.3 8.8 102 535-637 14-138 (159)
164 3upv_A Heat shock protein STI1 98.9 5.9E-08 2E-12 78.6 14.4 97 498-595 5-101 (126)
165 3q49_B STIP1 homology and U bo 98.9 4.5E-08 1.5E-12 80.7 13.6 102 531-633 8-109 (137)
166 2xev_A YBGF; tetratricopeptide 98.8 4.4E-08 1.5E-12 79.8 13.1 92 503-595 8-105 (129)
167 3gw4_A Uncharacterized protein 98.8 5.9E-08 2E-12 86.3 14.9 156 439-595 4-176 (203)
168 2dba_A Smooth muscle cell asso 98.8 9.5E-08 3.3E-12 79.9 15.3 98 496-595 27-128 (148)
169 3rkv_A Putative peptidylprolyl 98.8 3.1E-08 1.1E-12 84.5 12.1 100 497-596 11-127 (162)
170 2fbn_A 70 kDa peptidylprolyl i 98.8 7.8E-09 2.7E-13 91.7 8.6 155 438-594 15-185 (198)
171 1dce_A Protein (RAB geranylger 98.8 3.6E-07 1.2E-11 94.5 21.5 174 442-619 44-244 (567)
172 2dba_A Smooth muscle cell asso 98.8 1.6E-07 5.6E-12 78.4 15.3 111 531-642 27-140 (148)
173 1hxi_A PEX5, peroxisome target 98.8 6E-08 2.1E-12 77.7 11.3 96 500-596 20-115 (121)
174 1kt0_A FKBP51, 51 kDa FK506-bi 98.8 8.9E-08 3.1E-12 96.8 14.5 143 442-586 249-405 (457)
175 1elr_A TPR2A-domain of HOP; HO 98.7 9.3E-08 3.2E-12 77.9 11.9 110 498-610 5-121 (131)
176 2xev_A YBGF; tetratricopeptide 98.7 4.1E-07 1.4E-11 73.9 15.1 103 535-638 5-113 (129)
177 1elr_A TPR2A-domain of HOP; HO 98.7 1.3E-07 4.4E-12 77.0 11.8 100 533-633 5-111 (131)
178 1ihg_A Cyclophilin 40; ppiase 98.7 1.5E-07 5.2E-12 91.9 14.2 141 462-623 223-363 (370)
179 3rkv_A Putative peptidylprolyl 98.7 9.5E-08 3.3E-12 81.4 11.1 96 537-633 16-129 (162)
180 3k9i_A BH0479 protein; putativ 98.7 2.5E-08 8.7E-13 79.6 6.8 87 510-596 3-91 (117)
181 1dce_A Protein (RAB geranylger 98.7 9E-07 3.1E-11 91.5 19.9 162 477-641 44-233 (567)
182 1wao_1 Serine/threonine protei 98.7 3.3E-08 1.1E-12 100.5 9.0 118 506-625 15-134 (477)
183 2kck_A TPR repeat; tetratricop 98.7 1.4E-07 4.7E-12 74.4 10.7 99 497-596 6-107 (112)
184 2if4_A ATFKBP42; FKBP-like, al 98.7 5E-08 1.7E-12 94.3 8.8 154 461-634 178-332 (338)
185 3ro3_A PINS homolog, G-protein 98.6 1.7E-07 5.7E-12 79.7 10.9 132 499-630 11-158 (164)
186 3k9i_A BH0479 protein; putativ 98.6 5.3E-08 1.8E-12 77.6 6.5 92 544-636 2-96 (117)
187 1kt0_A FKBP51, 51 kDa FK506-bi 98.6 5.3E-07 1.8E-11 91.2 15.4 150 406-559 248-413 (457)
188 4b4t_Q 26S proteasome regulato 98.6 2.6E-06 8.9E-11 85.9 20.1 96 534-629 137-244 (434)
189 2hr2_A Hypothetical protein; a 98.6 6.8E-07 2.3E-11 73.5 12.5 97 500-596 14-132 (159)
190 1wao_1 Serine/threonine protei 98.6 3.3E-07 1.1E-11 93.1 12.6 117 472-590 16-134 (477)
191 1zu2_A Mitochondrial import re 98.5 1.4E-07 5E-12 77.3 7.2 87 509-596 14-121 (158)
192 1ihg_A Cyclophilin 40; ppiase 98.5 8.6E-07 2.9E-11 86.6 14.1 142 426-588 222-363 (370)
193 3ro3_A PINS homolog, G-protein 98.5 7.7E-07 2.6E-11 75.5 11.2 132 464-595 11-158 (164)
194 1klx_A Cysteine rich protein B 98.5 3.5E-06 1.2E-10 69.1 14.6 113 511-633 9-129 (138)
195 4b4t_Q 26S proteasome regulato 98.4 1.5E-05 5.1E-10 80.3 21.0 199 363-561 10-245 (434)
196 2l6j_A TPR repeat-containing p 98.4 1.3E-07 4.3E-12 74.5 4.4 94 531-625 3-102 (111)
197 2if4_A ATFKBP42; FKBP-like, al 98.4 4.9E-07 1.7E-11 87.4 9.3 151 426-596 178-329 (338)
198 1zu2_A Mitochondrial import re 98.4 1.1E-06 3.6E-11 72.2 8.5 95 543-638 13-128 (158)
199 2kat_A Uncharacterized protein 98.4 3.6E-06 1.2E-10 66.6 11.6 80 515-595 3-82 (115)
200 1na3_A Designed protein CTPR2; 98.4 3.9E-06 1.3E-10 62.9 11.0 83 532-615 9-91 (91)
201 2kat_A Uncharacterized protein 98.3 6.1E-06 2.1E-10 65.2 11.4 82 550-632 3-84 (115)
202 2l6j_A TPR repeat-containing p 98.2 9.6E-07 3.3E-11 69.3 4.9 95 496-591 3-103 (111)
203 3n71_A Histone lysine methyltr 98.2 1.4E-05 4.7E-10 80.4 14.0 95 534-629 353-463 (490)
204 1klx_A Cysteine rich protein B 98.2 6E-05 2E-09 61.6 15.6 111 476-596 9-127 (138)
205 3ma5_A Tetratricopeptide repea 98.2 9.8E-06 3.4E-10 62.0 9.6 65 531-595 6-70 (100)
206 1na3_A Designed protein CTPR2; 98.1 2.3E-05 7.7E-10 58.6 10.8 83 497-580 9-91 (91)
207 3n71_A Histone lysine methyltr 98.1 3.2E-05 1.1E-09 77.8 14.5 124 472-595 319-464 (490)
208 2kc7_A BFR218_protein; tetratr 98.1 4.8E-06 1.6E-10 63.7 6.1 88 537-633 5-93 (99)
209 3ma5_A Tetratricopeptide repea 98.0 2.5E-05 8.6E-10 59.7 9.4 68 563-631 4-71 (100)
210 3bee_A Putative YFRE protein; 97.9 8.1E-05 2.8E-09 55.5 9.9 66 531-596 5-73 (93)
211 3ly7_A Transcriptional activat 97.9 0.00012 4.1E-09 69.1 12.4 73 560-634 271-343 (372)
212 3u64_A Protein TP_0956; tetrat 97.8 0.0015 5.1E-08 59.0 17.8 91 548-639 179-280 (301)
213 1pc2_A Mitochondria fission pr 97.8 8.2E-05 2.8E-09 60.2 8.6 83 513-596 14-101 (152)
214 4ady_A RPN2, 26S proteasome re 97.7 0.074 2.5E-06 56.8 31.2 27 254-280 232-258 (963)
215 3bee_A Putative YFRE protein; 97.7 0.00043 1.5E-08 51.5 10.0 71 562-633 2-75 (93)
216 1pc2_A Mitochondria fission pr 97.6 0.00048 1.6E-08 55.7 10.8 90 547-637 13-107 (152)
217 2v5f_A Prolyl 4-hydroxylase su 97.6 0.00019 6.5E-09 55.1 8.3 75 531-606 4-85 (104)
218 3qww_A SET and MYND domain-con 97.6 0.00022 7.4E-09 70.5 10.1 87 509-595 310-411 (433)
219 2kc7_A BFR218_protein; tetratr 97.6 0.00036 1.2E-08 52.9 9.3 67 571-638 5-72 (99)
220 2v5f_A Prolyl 4-hydroxylase su 97.6 0.0011 3.7E-08 50.8 11.5 76 567-642 6-87 (104)
221 4ady_A RPN2, 26S proteasome re 97.6 0.13 4.6E-06 54.9 33.7 272 331-612 383-672 (963)
222 3u64_A Protein TP_0956; tetrat 97.5 0.0091 3.1E-07 54.0 17.9 105 513-627 179-295 (301)
223 3qwp_A SET and MYND domain-con 97.5 0.00082 2.8E-08 66.5 12.4 92 504-595 294-400 (429)
224 3ly7_A Transcriptional activat 97.5 0.0021 7.2E-08 60.7 14.0 66 496-563 276-341 (372)
225 3qww_A SET and MYND domain-con 97.4 0.00081 2.8E-08 66.4 10.4 87 474-560 310-410 (433)
226 3mkq_A Coatomer beta'-subunit; 97.3 0.022 7.4E-07 62.3 22.3 189 367-620 609-802 (814)
227 3qwp_A SET and MYND domain-con 97.2 0.0026 8.8E-08 63.0 12.2 91 469-559 294-398 (429)
228 4h7y_A Dual specificity protei 97.2 0.003 1E-07 50.1 9.4 64 578-642 72-135 (161)
229 1nzn_A CGI-135 protein, fissio 97.1 0.0063 2.2E-07 47.2 10.6 88 513-602 17-109 (126)
230 1nzn_A CGI-135 protein, fissio 97.1 0.0036 1.2E-07 48.6 9.0 92 545-636 14-109 (126)
231 3mkq_A Coatomer beta'-subunit; 97.0 0.065 2.2E-06 58.5 21.8 45 368-418 663-707 (814)
232 4h7y_A Dual specificity protei 96.9 0.0071 2.4E-07 48.0 9.8 113 459-573 10-135 (161)
233 1wy6_A Hypothetical protein ST 96.8 0.11 3.8E-06 40.3 17.0 66 567-633 92-157 (172)
234 1wy6_A Hypothetical protein ST 96.5 0.2 7E-06 38.8 15.7 140 437-597 17-156 (172)
235 3lvg_A Clathrin heavy chain 1; 96.3 2.9E-06 9.9E-11 81.2 -15.8 251 91-377 67-324 (624)
236 3o48_A Mitochondria fission 1 96.3 0.081 2.8E-06 41.2 11.4 70 527-596 35-108 (134)
237 1y8m_A FIS1; mitochondria, unk 96.1 0.19 6.3E-06 39.7 13.0 74 527-601 34-111 (144)
238 3mkq_B Coatomer subunit alpha; 96.0 0.5 1.7E-05 39.2 16.0 8 511-518 103-110 (177)
239 3o48_A Mitochondria fission 1 96.0 0.07 2.4E-06 41.5 9.8 76 562-637 36-114 (134)
240 3mkq_B Coatomer subunit alpha; 95.9 0.61 2.1E-05 38.7 18.0 43 439-487 17-59 (177)
241 1y8m_A FIS1; mitochondria, unk 95.8 0.17 6E-06 39.9 11.4 73 564-636 37-112 (144)
242 3ffl_A Anaphase-promoting comp 94.8 0.13 4.5E-06 41.8 8.2 57 503-559 26-90 (167)
243 4gns_B Protein CSD3, chitin bi 94.8 0.16 5.5E-06 53.3 11.0 53 574-627 345-397 (754)
244 3lpz_A GET4 (YOR164C homolog); 94.5 3.1 0.00011 38.7 20.0 166 429-629 37-215 (336)
245 4b4t_P 26S proteasome regulato 94.4 3.8 0.00013 40.4 19.8 50 336-385 30-84 (445)
246 3ffl_A Anaphase-promoting comp 94.3 0.22 7.7E-06 40.5 8.6 133 465-611 23-165 (167)
247 1zbp_A Hypothetical protein VP 94.2 0.75 2.6E-05 40.9 12.3 124 505-639 5-138 (273)
248 4gns_B Protein CSD3, chitin bi 93.6 0.38 1.3E-05 50.6 10.9 53 540-592 345-397 (754)
249 4fhn_B Nucleoporin NUP120; pro 93.4 2.4 8.1E-05 47.9 18.0 169 114-305 815-989 (1139)
250 2wpv_A GET4, UPF0363 protein Y 93.4 4.9 0.00017 37.1 20.7 169 429-630 35-217 (312)
251 2ff4_A Probable regulatory pro 93.3 0.54 1.8E-05 45.6 11.0 78 535-612 174-256 (388)
252 2ff4_A Probable regulatory pro 93.1 0.41 1.4E-05 46.5 9.8 74 568-642 173-251 (388)
253 2wpv_A GET4, UPF0363 protein Y 91.0 9.5 0.00033 35.2 23.2 25 461-485 133-157 (312)
254 4b4t_P 26S proteasome regulato 90.2 15 0.00052 36.1 22.3 96 360-455 140-246 (445)
255 3lvg_A Clathrin heavy chain 1; 90.0 0.0011 3.8E-08 63.8 -11.5 245 147-413 54-325 (624)
256 3txn_A 26S proteasome regulato 88.7 17 0.0006 34.8 21.1 166 358-524 20-208 (394)
257 3esl_A Checkpoint serine/threo 88.6 6.5 0.00022 33.2 11.4 73 528-600 73-149 (202)
258 4fhn_B Nucleoporin NUP120; pro 87.3 5.8 0.0002 44.8 13.8 145 432-583 817-988 (1139)
259 1zbp_A Hypothetical protein VP 86.6 1.9 6.6E-05 38.4 7.4 57 540-596 5-61 (273)
260 3esl_A Checkpoint serine/threo 84.6 11 0.00036 32.0 10.5 73 568-641 82-155 (202)
261 1v54_E Cytochrome C oxidase po 83.6 8.1 0.00028 28.3 8.0 49 513-561 26-74 (109)
262 4a1g_A Mitotic checkpoint seri 83.5 16 0.00054 29.4 10.9 51 549-599 82-134 (152)
263 3lpz_A GET4 (YOR164C homolog); 82.9 30 0.001 32.1 27.7 111 325-450 38-159 (336)
264 2uwj_G Type III export protein 81.8 7 0.00024 28.4 7.0 80 124-212 19-98 (115)
265 1qsa_A Protein (soluble lytic 81.0 54 0.0018 33.8 39.1 201 371-591 228-438 (618)
266 1v54_E Cytochrome C oxidase po 80.2 15 0.00052 26.9 9.1 49 408-456 26-74 (109)
267 2wvi_A Mitotic checkpoint seri 79.9 23 0.00079 28.9 11.0 53 550-602 78-132 (164)
268 4b4t_R RPN7, 26S proteasome re 79.8 17 0.00057 35.7 11.9 63 253-315 132-196 (429)
269 4b4t_R RPN7, 26S proteasome re 78.6 20 0.00067 35.1 12.1 98 464-561 133-237 (429)
270 1qsa_A Protein (soluble lytic 78.5 64 0.0022 33.2 37.5 201 406-625 228-437 (618)
271 2p58_C Putative type III secre 77.2 19 0.00064 26.3 8.2 79 124-211 20-98 (116)
272 2y69_E Cytochrome C oxidase su 75.4 27 0.00091 27.2 9.1 48 409-456 70-117 (152)
273 2y69_E Cytochrome C oxidase su 75.3 18 0.00061 28.2 8.0 58 515-572 71-128 (152)
274 2uwj_G Type III export protein 74.5 18 0.00061 26.3 7.3 51 191-247 48-98 (115)
275 4b4t_S RPN3, 26S proteasome re 73.9 23 0.00078 35.2 10.7 69 496-564 230-302 (523)
276 2qx5_A Nucleoporin NIC96; mRNA 73.4 90 0.0031 32.3 18.4 16 611-626 548-563 (661)
277 1ya0_A SMG-7 transcript varian 72.4 24 0.00083 35.1 10.8 74 503-577 158-231 (497)
278 2wvi_A Mitotic checkpoint seri 71.9 35 0.0012 27.8 9.7 60 583-642 77-137 (164)
279 4a1g_A Mitotic checkpoint seri 69.8 41 0.0014 26.9 10.2 51 165-215 83-134 (152)
280 3txn_A 26S proteasome regulato 69.3 82 0.0028 30.2 28.5 223 397-632 104-345 (394)
281 2p58_C Putative type III secre 67.1 34 0.0012 25.0 9.1 48 227-280 50-97 (116)
282 4aez_C MAD3, mitotic spindle c 64.6 32 0.0011 29.6 8.4 51 549-599 131-183 (223)
283 4b4t_S RPN3, 26S proteasome re 61.1 27 0.00093 34.7 8.3 63 533-595 232-299 (523)
284 3kae_A CDC27, possible protein 60.6 68 0.0023 26.2 11.9 25 605-629 118-142 (242)
285 4aez_C MAD3, mitotic spindle c 55.5 83 0.0028 27.1 9.4 53 164-216 131-184 (223)
286 4gq2_M Nucleoporin NUP120; bet 54.5 1.1E+02 0.0037 33.7 12.7 29 567-595 898-926 (950)
287 2ijq_A Hypothetical protein; s 53.8 46 0.0016 27.0 7.1 52 578-629 44-103 (161)
288 3mv2_A Coatomer subunit alpha; 51.3 1.1E+02 0.0037 28.2 9.9 50 547-596 185-237 (325)
289 4gq2_M Nucleoporin NUP120; bet 50.2 67 0.0023 35.3 10.2 137 111-266 810-950 (950)
290 1ya0_A SMG-7 transcript varian 46.8 63 0.0022 32.1 8.5 79 534-613 154-232 (497)
291 3eiq_C Programmed cell death p 46.3 1.7E+02 0.0058 27.5 10.8 62 395-457 220-283 (358)
292 2d2s_A Exocyst complex compone 45.1 1.3E+02 0.0043 26.3 9.3 89 258-349 24-118 (235)
293 1bpo_A Protein (clathrin); cla 44.8 2.3E+02 0.0079 27.6 13.8 120 113-241 334-453 (494)
294 3eiq_C Programmed cell death p 43.1 2.2E+02 0.0074 26.8 11.5 25 290-314 57-81 (358)
295 2nsz_A Programmed cell death p 37.2 1.1E+02 0.0039 23.5 7.0 84 395-479 10-95 (129)
296 3c1d_A Protein ORAA, regulator 36.9 1.6E+02 0.0056 23.6 9.2 51 513-565 46-96 (159)
297 2d2s_A Exocyst complex compone 36.4 1.8E+02 0.0062 25.3 8.9 28 251-278 90-117 (235)
298 2v6y_A AAA family ATPase, P60 36.2 44 0.0015 23.4 4.0 19 576-594 21-39 (83)
299 2crb_A Nuclear receptor bindin 35.3 70 0.0024 22.8 4.7 26 568-593 17-42 (97)
300 1bpo_A Protein (clathrin); cla 31.0 3.2E+02 0.011 26.7 10.0 141 475-627 342-482 (494)
301 2w2u_A Hypothetical P60 katani 30.2 72 0.0025 22.4 4.3 17 577-593 30-46 (83)
302 2ion_A PDCD4, programmed cell 29.8 98 0.0034 24.8 5.6 22 397-418 14-35 (152)
303 2xig_A Ferric uptake regulatio 29.8 1.9E+02 0.0066 22.9 7.4 44 293-336 32-75 (150)
304 3ltm_A Alpha-REP4; protein eng 28.9 2.5E+02 0.0087 23.4 19.4 16 181-196 32-47 (211)
305 2fe3_A Peroxide operon regulat 28.4 1.9E+02 0.0064 22.8 7.1 36 300-335 34-69 (145)
306 3pvs_A Replication-associated 27.4 4.4E+02 0.015 25.6 13.0 20 405-424 268-287 (447)
307 1k1a_A B-cell lymphoma 3-encod 27.3 2E+02 0.0069 24.5 8.1 22 156-177 15-36 (241)
308 2ion_A PDCD4, programmed cell 27.1 1.9E+02 0.0064 23.1 6.8 21 468-488 15-35 (152)
309 2zu6_B Programmed cell death p 26.9 3.7E+02 0.013 24.6 10.2 25 325-349 6-30 (307)
310 2r9g_A AAA ATPase, central reg 26.7 2.9E+02 0.0098 23.3 10.2 95 360-455 14-116 (204)
311 3pvs_A Replication-associated 26.7 4.5E+02 0.015 25.5 12.9 48 407-456 166-221 (447)
312 2crb_A Nuclear receptor bindin 26.2 1.2E+02 0.0042 21.6 4.6 24 535-558 18-41 (97)
313 1wdy_A 2-5A-dependent ribonucl 25.9 1.3E+02 0.0043 26.7 6.6 16 155-170 10-25 (285)
314 3i5p_A Nucleoporin NUP170; hel 24.8 2.4E+02 0.0081 28.2 8.4 46 442-490 50-95 (525)
315 1wdy_A 2-5A-dependent ribonucl 24.1 2.3E+02 0.0078 24.9 8.0 11 412-422 199-209 (285)
316 3ltm_A Alpha-REP4; protein eng 23.8 3.1E+02 0.011 22.7 19.6 80 145-232 31-110 (211)
317 3bge_A Predicted ATPase; struc 23.7 3.3E+02 0.011 22.9 9.8 44 363-406 10-56 (201)
318 2ynq_A ESSB; membrane protein, 23.5 2.9E+02 0.0099 22.2 7.3 79 508-592 19-99 (161)
319 3ax2_A Mitochondrial import re 23.1 1.8E+02 0.0061 19.8 5.0 24 571-594 22-45 (73)
320 3eyy_A Putative iron uptake re 22.6 1.7E+02 0.0059 23.0 5.8 31 304-334 34-64 (145)
321 2xig_A Ferric uptake regulatio 22.5 2.9E+02 0.0099 21.8 7.9 44 433-476 32-75 (150)
322 1mzb_A Ferric uptake regulatio 22.1 2E+02 0.0067 22.3 6.1 33 303-335 34-66 (136)
323 2cwy_A Hypothetical protein TT 20.9 1.6E+02 0.0054 21.2 4.7 51 577-629 12-67 (94)
324 3mkr_B Coatomer subunit alpha; 20.7 4.9E+02 0.017 23.8 13.2 98 539-636 109-233 (320)
325 2ijq_A Hypothetical protein; s 20.6 3.4E+02 0.012 21.9 8.3 17 578-594 87-103 (161)
326 2fe3_A Peroxide operon regulat 20.6 2.5E+02 0.0085 22.1 6.4 57 523-580 13-70 (145)
327 3bqo_A Telomeric repeat-bindin 20.2 1.2E+02 0.0041 25.4 4.3 20 541-560 126-145 (211)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9.2e-42 Score=363.89 Aligned_cols=485 Identities=10% Similarity=-0.005 Sum_probs=410.7
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 045674 145 HNLECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLM 224 (650)
Q Consensus 145 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll 224 (650)
++...|..++..+.+.|++++|..+|+++... .|+..++..++.+|.+.|++++|+.+|+++... +++..+++.++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 157 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAA 157 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHH
Confidence 45678889999999999999999999999864 457788889999999999999999999988653 56888999999
Q ss_pred HHHHhcCChhHHHHHHHHHhcC---------------CCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHH
Q 045674 225 NGLVNSMFIESSELVFKVMENG---------------KVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKIT 289 (650)
Q Consensus 225 ~~~~~~~~~~~A~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 289 (650)
.+|.+.|++++|..+|+++... +.+.+..+|+.++.+|.+.|++++|+++|+++.+.+. .+...
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~ 236 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA-KCYEA 236 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHH
T ss_pred HHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-hhhHH
Confidence 9999999999999999853221 2233588999999999999999999999999998642 25556
Q ss_pred HHHHHHHHHhcCCHHHHH--HH-HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 045674 290 YMTLIQACYLEGDFDSCL--SL-YHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDS 366 (650)
Q Consensus 290 ~~~l~~~~~~~~~~~~a~--~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 366 (650)
+..+...+...+..+.+. .+ +..+...+......+|+.++..|.+.|++++|.++|+++.+. +++..+++.++.+
T Consensus 237 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 314 (597)
T 2xpi_A 237 FDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADT 314 (597)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHH
T ss_pred HHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHH
Confidence 666665544333222211 11 444444444444556777788999999999999999999876 5799999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 045674 367 YAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEA 446 (650)
Q Consensus 367 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 446 (650)
|.+.|++++|+.+|+++.+.+.. +..++..++.++.+.|++++|..+++.+.+..+. +..++..++.+|.+.|++++|
T Consensus 315 ~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A 392 (597)
T 2xpi_A 315 LFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRHPE-KAVTWLAVGIYYLCVNKISEA 392 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-SHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHhccHHHH
Confidence 99999999999999999876432 6778999999999999999999999999876554 788999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045674 447 EELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDK 526 (650)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 526 (650)
.++|+++.+.. +.+..+|+.++.+|.+.|++++|+++|+++.+.++. +..+|+.++.+|.+.|++++|.++|+++.+.
T Consensus 393 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (597)
T 2xpi_A 393 RRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG-THLPYLFLGMQHMQLGNILLANEYLQSSYAL 470 (597)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT-CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999875 678899999999999999999999999999987543 7889999999999999999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC------CCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 045674 527 GITPTAASFRALSIGLCLSGKVARACKILDELAPK------GIIP-ETAFEDMITCLCKTGRIKEACKLADGIVDREREI 599 (650)
Q Consensus 527 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 599 (650)
.+. +..++..++.+|.+.|++++|.++|+++.+. .+.+ ..+|..++.+|.+.|++++|+++++++++.+ +.
T Consensus 471 ~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~ 548 (597)
T 2xpi_A 471 FQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TN 548 (597)
T ss_dssp CCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SC
T ss_pred CCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CC
Confidence 544 7889999999999999999999999999876 2332 6899999999999999999999999999987 77
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCChhhhhhhh
Q 045674 600 PGKIRTALINALRKAGNADLAIKLMHSKIGVGYDRMGSIKRRV 642 (650)
Q Consensus 600 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 642 (650)
+..+|..++.+|.+.|++++|.+.++++++..+........+.
T Consensus 549 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~ 591 (597)
T 2xpi_A 549 DANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLK 591 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 8999999999999999999999999999999888655554443
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.9e-41 Score=359.08 Aligned_cols=487 Identities=10% Similarity=-0.004 Sum_probs=417.5
Q ss_pred HHHHHHHHhccCCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 045674 112 NFVSFVLRNHDVSKRPNVGLRLFTWAARQKKYSHNLECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKS 191 (650)
Q Consensus 112 ~~~~~~l~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 191 (650)
..+..+++.+...|+++.|+.+|+.+... .|+..++..++.+|.+.|++++|..+|+++... +.+..+++.++.+
T Consensus 85 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 159 (597)
T 2xpi_A 85 DYLRLWRHDALMQQQYKCAAFVGEKVLDI---TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFC 159 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCchHHHHHHHHHHhh---CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHH
Confidence 34455667777889999999999988753 346788899999999999999999999998654 6789999999999
Q ss_pred HHcCCCHHHHHHHHHHHHHC---------------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhhHH
Q 045674 192 FGGLGMVEELLWVWRSMKEN---------------GIEPSLYTYNFLMNGLVNSMFIESSELVFKVMENGKVGPDVVTYN 256 (650)
Q Consensus 192 ~~~~g~~~~a~~~~~~~~~~---------------~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 256 (650)
|.+.|++++|+++|+++... +...+..+|+.++.+|.+.|++++|..+|+++.+.+ +.+...+.
T Consensus 160 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~ 238 (597)
T 2xpi_A 160 LVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAFD 238 (597)
T ss_dssp HHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHHH
Confidence 99999999999999953221 123358899999999999999999999999998764 33566666
Q ss_pred HHHHHHHHcCChhHHH--HH-HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 045674 257 TMIKGYCKVGKTQKAM--EK-FRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLC 333 (650)
Q Consensus 257 ~l~~~~~~~g~~~~A~--~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 333 (650)
.++..+...+..+.+. .+ +..+...+......+|+.++..|.+.|++++|.++|+++.+. +++..++..++.+|.
T Consensus 239 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~ 316 (597)
T 2xpi_A 239 QLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLF 316 (597)
T ss_dssp HHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHH
T ss_pred HHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHH
Confidence 6666554433322221 11 444544444445566777788899999999999999998876 468999999999999
Q ss_pred hcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 045674 334 KVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQ 413 (650)
Q Consensus 334 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 413 (650)
+.|++++|..+|+++.+.+.. +..++..++.+|.+.|++++|..+++++.+.. ..+..++..++..|.+.|++++|.+
T Consensus 317 ~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 394 (597)
T 2xpi_A 317 VRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARR 394 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHH
Confidence 999999999999999987533 67789999999999999999999999998653 3468899999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 045674 414 YFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGC 493 (650)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 493 (650)
+|+++.+..+. +..+|..++.+|.+.|++++|+++|+++.+.+ +.+..+|+.++.+|.+.|++++|.++|+++.+..+
T Consensus 395 ~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 472 (597)
T 2xpi_A 395 YFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQ 472 (597)
T ss_dssp HHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999887554 78899999999999999999999999999875 67889999999999999999999999999998755
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHH
Q 045674 494 DQTVYTYTILINGMFKEHRNEEALKLWDMMIDK----GITPT--AASFRALSIGLCLSGKVARACKILDELAPKGIIPET 567 (650)
Q Consensus 494 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 567 (650)
. +..+|+.++.+|.+.|++++|.++|+++.+. +..|+ ..++..++.+|.+.|++++|.++++++.+.++.+..
T Consensus 473 ~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 551 (597)
T 2xpi_A 473 Y-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDAN 551 (597)
T ss_dssp C-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHH
T ss_pred C-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChH
Confidence 4 8899999999999999999999999999875 66777 789999999999999999999999999999898999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 045674 568 AFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALR 612 (650)
Q Consensus 568 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 612 (650)
+|..++.+|...|++++|.++|+++++.+ |.+..++..++.+|.
T Consensus 552 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 552 VHTAIALVYLHKKIPGLAITHLHESLAIS-PNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHh
Confidence 99999999999999999999999999987 778888888887653
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=2e-30 Score=260.30 Aligned_cols=381 Identities=13% Similarity=0.050 Sum_probs=252.9
Q ss_pred HHHhcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 045674 226 GLVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDS 305 (650)
Q Consensus 226 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 305 (650)
.+.+.|++++|...++.+.+.. +.+...+..+...+...|++++|...++...+.. +.+..+|..+..++.+.|++++
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 3445555555555555554432 2234444555555555666666666665555442 3345556666666666666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045674 306 CLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKY 385 (650)
Q Consensus 306 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 385 (650)
|...|+++.+.. +.+...+..++.++.+.|++++|...|+++++... .+...+..+...+...|++++|...|+++..
T Consensus 86 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 86 AIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 666666665543 22444566666666666666666666666665421 1344555566666666777777777776665
Q ss_pred CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 045674 386 EGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCY 465 (650)
Q Consensus 386 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 465 (650)
.. .-+..+|..+...+...|++++|+..|+++.+.++. +...+..+...+...|++++|...++++.... |.+..++
T Consensus 164 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 240 (388)
T 1w3b_A 164 TQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVH 240 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHH
Confidence 42 113556666777777777777777777777666544 56667777777777777777777777777764 5567777
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 045674 466 NVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLS 545 (650)
Q Consensus 466 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 545 (650)
..++.+|.+.|++++|+..|+++.+.++. +..+|..++.++...|++++|...++++++..+ .+..++..++..+...
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~ 318 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLCP-THADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHc
Confidence 77777777788888888888777776443 566777777777778888888888888776543 3667777778888888
Q ss_pred CCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 045674 546 GKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGN 616 (650)
Q Consensus 546 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 616 (650)
|++++|.+.++++.+..|.+..++..++.++.+.|++++|++.++++++.. |.+..++..++.++...|+
T Consensus 319 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHhHHHHHHHccC
Confidence 888888888888887777777778888888888888888888888887765 5567777777777766553
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1e-29 Score=255.12 Aligned_cols=380 Identities=16% Similarity=0.065 Sum_probs=252.7
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCChhHH
Q 045674 192 FGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKA 271 (650)
Q Consensus 192 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 271 (650)
+.+.|++++|++.++++.+.. +.+...+..+...+...|++++|...++...+.. +.+..+|..++..|.+.|++++|
T Consensus 9 ~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A 86 (388)
T 1w3b_A 9 EYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHH
Confidence 334444444444444444331 1133333334444444445555544444444332 23444555555555555555555
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 045674 272 MEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRR 351 (650)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 351 (650)
++.|+++.+.. +.+..+|..++.++...|++++|.+.|+++.+... .+...+..+...+...|++++|.+.|+++++.
T Consensus 87 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 164 (388)
T 1w3b_A 87 IEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLKAIET 164 (388)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 55555555432 12334455555555555555555555555555432 23444555556666666666666666666654
Q ss_pred CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 045674 352 GCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYS 431 (650)
Q Consensus 352 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 431 (650)
. +.+..+|..++..+...|++++|+..|+++...+. .+...+..+...+...|++++|+..++++....+. +..++.
T Consensus 165 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~ 241 (388)
T 1w3b_A 165 Q-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHG 241 (388)
T ss_dssp C-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHHHHH
Confidence 2 22456667777777777777777777777766432 14556777777778888888888888877776554 677778
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 045674 432 SLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEH 511 (650)
Q Consensus 432 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 511 (650)
.++.++...|++++|++.|+++++.+ +.+..++..++.++.+.|++++|+..|+++.+..+ .+..++..++..+...|
T Consensus 242 ~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g 319 (388)
T 1w3b_A 242 NLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP-THADSLNNLANIKREQG 319 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHcC
Confidence 88888888888888888888888874 56777888888888888888888888888887743 47788888888888899
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCC
Q 045674 512 RNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGR 581 (650)
Q Consensus 512 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 581 (650)
++++|...++++.+..+. +..++..++.++.+.|++++|...++++.+..|....++..++.++...|+
T Consensus 320 ~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 320 NIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp CHHHHHHHHHHHTTSCTT-CHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 999999999988876433 677888889999999999999999999998888888888888888877664
No 5
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=9.1e-28 Score=250.83 Aligned_cols=449 Identities=12% Similarity=-0.014 Sum_probs=274.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 045674 147 LECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNG 226 (650)
Q Consensus 147 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 226 (650)
...+...+..+.+.|++++|+..|+++++.+ |+...+..++.+|...|++++|+..++++.+.+ +.+..++..+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 5677788888888888888888888888764 578888888888888888888888888888764 3366778888888
Q ss_pred HHhcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 045674 227 LVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSC 306 (650)
Q Consensus 227 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 306 (650)
+...|++++|...|+++.+.+ +++......++..+........+.+.+..+...+..|+...+................
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 888888888888888887765 3445555555555555444444444444444333333332222211111111111111
Q ss_pred HHHHHHHHHCCCC---------CCHHHHHHHHHHHHh---cCChHHHHHHHHHHHH-----cCC--------CcCHHHHH
Q 045674 307 LSLYHEMDEKGIE---------IPSHAYNLVIGGLCK---VGKCIEGHAIFESMIR-----RGC--------QPNVAIYT 361 (650)
Q Consensus 307 ~~~~~~~~~~~~~---------~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~-----~~~--------~~~~~~~~ 361 (650)
..+...+...... .+...+......+.. .|++++|..+|+++.+ ... +.+...+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 2222111111111 113334444444443 6777777777777766 211 11244566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 045674 362 ALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAG 441 (650)
Q Consensus 362 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 441 (650)
.++..+...|++++|..+|+++.+.. |+...+..+...+...|++++|...++.+....+. +...+..++.++...|
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhC
Confidence 66667777777777777777766653 33556666666777777777777777777665544 4556666777777777
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 045674 442 RVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWD 521 (650)
Q Consensus 442 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 521 (650)
++++|...++++.+.. +.+...+..++..|...|++++|...++++.+..+. +...+..++..+...|++++|...++
T Consensus 319 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp CTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 7777777777777654 445666677777777777777777777777665333 45566666777777777777777777
Q ss_pred HHHHCCCC-CC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 045674 522 MMIDKGIT-PT----AASFRALSIGLCL---SGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIV 593 (650)
Q Consensus 522 ~~~~~~~~-p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 593 (650)
++.+..+. ++ ...+..++.++.. .|++++|...++++.+..+.+..++..++.++...|++++|.+.+++++
T Consensus 397 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 476 (514)
T 2gw1_A 397 LAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESA 476 (514)
T ss_dssp HHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 76653222 11 2366666677777 7777777777777776666666677777777777777777777777777
Q ss_pred HcCCCCCHHHHH
Q 045674 594 DREREIPGKIRT 605 (650)
Q Consensus 594 ~~~~~~~~~~~~ 605 (650)
+.+ +.+...+.
T Consensus 477 ~~~-~~~~~~~~ 487 (514)
T 2gw1_A 477 DLA-RTMEEKLQ 487 (514)
T ss_dssp HHC-SSHHHHHH
T ss_pred Hhc-cccHHHHH
Confidence 664 33444443
No 6
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.4e-27 Score=247.59 Aligned_cols=448 Identities=10% Similarity=-0.041 Sum_probs=328.4
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhhHHHHHHH
Q 045674 182 VSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKG 261 (650)
Q Consensus 182 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 261 (650)
...+..++..+.+.|++++|+..|+++...+ |+...+..+..++...|++++|...++++.+.. +.+..++..++.+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 4456777888889999999999999998864 688889999999999999999999999988764 4467788899999
Q ss_pred HHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 045674 262 YCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEG 341 (650)
Q Consensus 262 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 341 (650)
|.+.|++++|...|+++...+ +++......++..+........+.+.+..+...+..++...+................
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 999999999999999998875 3344455555555554444444444443332221111111111111111111111111
Q ss_pred HHHHHHHHHcCC---------CcCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHH-----CCCC--------CCHHhHH
Q 045674 342 HAIFESMIRRGC---------QPNVAIYTALIDSYAK---LGSMNEAINIFERMKY-----EGVE--------PDEVTYG 396 (650)
Q Consensus 342 ~~~~~~~~~~~~---------~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~-----~~~~--------p~~~~~~ 396 (650)
..+...+..... +.+...+..++..+.. .|++++|+.+|+++.. .... .+...+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 111111111111 1224555556665555 8899999999998877 3111 1345777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 045674 397 VIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCG 476 (650)
Q Consensus 397 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 476 (650)
.+...+...|++++|...++.+.+..+. ...+..++.++...|++++|...++++.... +.+...+..++.+|...|
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhC
Confidence 8888899999999999999998887655 7788888999999999999999999998874 667788889999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 045674 477 KLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILD 556 (650)
Q Consensus 477 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 556 (650)
++++|...++++.+..+. +...+..++..+...|++++|..+++++.+..+. +...+..++..+...|++++|...++
T Consensus 319 ~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp CTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999999887554 6678888888899999999999999999876443 56788888999999999999999999
Q ss_pred HHhhCCCCcH------HHHHHHHHHHHH---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 045674 557 ELAPKGIIPE------TAFEDMITCLCK---TGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSK 627 (650)
Q Consensus 557 ~~~~~~~~~~------~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 627 (650)
++.+..+.+. .++..++.++.. .|++++|.+.++++++.. +.+..++..++.+|...|++++|...++++
T Consensus 397 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 475 (514)
T 2gw1_A 397 LAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEES 475 (514)
T ss_dssp HHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 9987666543 388899999999 999999999999999876 667888889999999999999999999999
Q ss_pred HHCCCCChhhhh
Q 045674 628 IGVGYDRMGSIK 639 (650)
Q Consensus 628 ~~~~~~~~~~~~ 639 (650)
++..+.......
T Consensus 476 ~~~~~~~~~~~~ 487 (514)
T 2gw1_A 476 ADLARTMEEKLQ 487 (514)
T ss_dssp HHHCSSHHHHHH
T ss_pred HHhccccHHHHH
Confidence 998887544433
No 7
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=1.9e-27 Score=241.73 Aligned_cols=204 Identities=16% Similarity=0.149 Sum_probs=140.5
Q ss_pred HHHHHHHHHHCCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---------hhH
Q 045674 166 VRLVFNELKEKGFLMTV-SAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMF---------IES 235 (650)
Q Consensus 166 A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---------~~~ 235 (650)
+..+..++.+++....+ ..++.+|.+|++.|++++|+++|++|.+.|+.||..+|+.||.+|.+.+. ++.
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 34444555555544443 34777788888888888888888888888888888888888888776554 456
Q ss_pred HHHHHHHHhcCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045674 236 SELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDE 315 (650)
Q Consensus 236 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 315 (650)
|.++|++|...|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh
Q 045674 316 KGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAK 369 (650)
Q Consensus 316 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 369 (650)
.|+.||..+|+.|+.+|++.|+.++|.++|++|.+.|..|+..+|+.++..|+.
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 777777777777777777777777777777777777777777777777666654
No 8
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=2.8e-27 Score=240.47 Aligned_cols=202 Identities=18% Similarity=0.226 Sum_probs=124.9
Q ss_pred HHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCC---------HHHHH
Q 045674 308 SLYHEMDEKGIEIPS-HAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGS---------MNEAI 377 (650)
Q Consensus 308 ~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~A~ 377 (650)
.+.+.+.+.+....+ ..++.++.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.+. +++|.
T Consensus 11 ~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~ 90 (501)
T 4g26_A 11 NLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGF 90 (501)
T ss_dssp -------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHH
T ss_pred HHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHH
Confidence 333444444333222 23555556666666666666666666666666666666666665554432 56666
Q ss_pred HHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 045674 378 NIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKG 457 (650)
Q Consensus 378 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 457 (650)
++|++|...|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|
T Consensus 91 ~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G 170 (501)
T 4g26_A 91 DIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESE 170 (501)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 67777766667777777777777777777777777777777766666777777777777777777777777777777777
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 045674 458 CPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFK 509 (650)
Q Consensus 458 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 509 (650)
+.||..+|+.|+.+|++.|++++|.++|++|.+.|..|+..||+.++..|..
T Consensus 171 ~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 171 VVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 7777777777777777777777777777777776666777777766666653
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.96 E-value=2.1e-25 Score=234.29 Aligned_cols=437 Identities=12% Similarity=0.004 Sum_probs=318.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 045674 147 LECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNG 226 (650)
Q Consensus 147 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 226 (650)
...+..++..+.+.|++++|+..|+++++.. +.+...+..++.+|...|++++|++.|+++.+.+ +.+..++..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 4566778888888899999999998888775 6678888888888888899999999998888864 3467788888888
Q ss_pred HHhcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhc
Q 045674 227 LVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARN------VQPDKITYMTLIQACYLE 300 (650)
Q Consensus 227 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~ 300 (650)
+...|++++|...|+ .... .|+ .....+..+...+...+|...++.+.... ..|+. ..+..+...
T Consensus 103 ~~~~g~~~~A~~~~~-~~~~--~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~~ 173 (537)
T 3fp2_A 103 NESLGNFTDAMFDLS-VLSL--NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSN----TSLASFFGI 173 (537)
T ss_dssp HHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCH----HHHHHHHHT
T ss_pred HHHcCCHHHHHHHHH-HHhc--CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchH----hHHHHHHHh
Confidence 888899999988886 3322 222 22223445555666678888888886531 12232 233444455
Q ss_pred CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh--------cCChHHHHHHHHHHHHcCCCcC-------HHHHHHHH
Q 045674 301 GDFDSCLSLYHEMDEKGIEIP-SHAYNLVIGGLCK--------VGKCIEGHAIFESMIRRGCQPN-------VAIYTALI 364 (650)
Q Consensus 301 ~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~--------~g~~~~a~~~~~~~~~~~~~~~-------~~~~~~l~ 364 (650)
.+.+.+...+...... .+. ......+...+.. .|++++|..+++.+++.... + ..++..+.
T Consensus 174 ~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g 250 (537)
T 3fp2_A 174 FDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTG 250 (537)
T ss_dssp SCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHH
T ss_pred cChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHH
Confidence 5555554443332221 111 1122233322222 24788888888888876322 2 23566677
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 045674 365 DSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVD 444 (650)
Q Consensus 365 ~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 444 (650)
..+...|++++|+..|+++... .|+...+..+...+...|++++|...++.+.+..+. +..++..++..+...|+++
T Consensus 251 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~ 327 (537)
T 3fp2_A 251 IFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYK 327 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHH
Confidence 7888899999999999998876 456778888888888999999999999998887655 7788888999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045674 445 EAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMI 524 (650)
Q Consensus 445 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 524 (650)
+|...++++.+.. +.+...+..++.+|...|++++|...++++.+..+. +...+..++..+...|++++|...++++.
T Consensus 328 ~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 405 (537)
T 3fp2_A 328 NAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT-LPEVPTFFAEILTDRGDFDTAIKQYDIAK 405 (537)
T ss_dssp HHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999999998875 567788889999999999999999999999887544 67788888999999999999999999987
Q ss_pred HCCC-----CCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 045674 525 DKGI-----TPTAASFRALSIGLCLS----------GKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLA 589 (650)
Q Consensus 525 ~~~~-----~p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 589 (650)
+..+ ......+...+.++... |++++|..+++++.+..|.+..++..++.++...|++++|.+.|
T Consensus 406 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 485 (537)
T 3fp2_A 406 RLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELF 485 (537)
T ss_dssp HHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHH
Confidence 5321 11223355566777777 99999999999999888888899999999999999999999999
Q ss_pred HHHHHcCCCCCHHH
Q 045674 590 DGIVDREREIPGKI 603 (650)
Q Consensus 590 ~~~~~~~~~~~~~~ 603 (650)
+++++.. +.+...
T Consensus 486 ~~al~~~-~~~~~~ 498 (537)
T 3fp2_A 486 EDSAILA-RTMDEK 498 (537)
T ss_dssp HHHHHHC---CHHH
T ss_pred HHHHHhC-CCcHHH
Confidence 9999876 444443
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.95 E-value=3.5e-26 Score=240.23 Aligned_cols=440 Identities=12% Similarity=0.014 Sum_probs=337.4
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhhHHHHHHH
Q 045674 182 VSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKG 261 (650)
Q Consensus 182 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 261 (650)
...+..++..+.+.|++++|+..|+++.... +.+...+..+..++...|++++|...++++.+.. +.+..++..++..
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 4567888889999999999999999999874 4478899999999999999999999999998765 4568889999999
Q ss_pred HHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCChH
Q 045674 262 YCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIE--IPSHAYNLVIGGLCKVGKCI 339 (650)
Q Consensus 262 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~ 339 (650)
+...|++++|...|+.+ .. .|+. ....+..+...+...+|...++.+...... .........+..+....+.+
T Consensus 103 ~~~~g~~~~A~~~~~~~-~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVL-SL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHcCCHHHHHHHHHHH-hc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 99999999999999744 32 2222 122244555566678889999888654210 00111123334445555555
Q ss_pred HHHHHHHHHHHcCCCcCHH-HHHHHHHHHH--------hcCCHHHHHHHHHHHHHCCCCCC--------HHhHHHHHHHH
Q 045674 340 EGHAIFESMIRRGCQPNVA-IYTALIDSYA--------KLGSMNEAINIFERMKYEGVEPD--------EVTYGVIISGL 402 (650)
Q Consensus 340 ~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~--------~~~~~~~A~~~~~~~~~~~~~p~--------~~~~~~l~~~~ 402 (650)
.+...+...... .+... ....+...+. ..|++++|+.+|+++.+. .|+ ..++..+...+
T Consensus 178 ~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~ 253 (537)
T 3fp2_A 178 LEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFH 253 (537)
T ss_dssp HHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHH
Confidence 555444332221 22211 2222322222 235899999999999875 333 23567777888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 045674 403 CKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEAL 482 (650)
Q Consensus 403 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 482 (650)
...|++++|...++.+.+..+. ...+..++..+...|++++|...++++.+.. +.+..++..++.+|...|++++|+
T Consensus 254 ~~~~~~~~A~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 330 (537)
T 3fp2_A 254 FLKNNLLDAQVLLQESINLHPT--PNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAK 330 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCC--HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhcccHHHHHHHHHHHHhcCCC--chHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHH
Confidence 9999999999999999987554 7888889999999999999999999999985 678899999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 045674 483 ALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKG 562 (650)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 562 (650)
..++++.+..+. +...+..++.++...|++++|..+++++.+..+. +...+..++.++...|++++|...++++.+..
T Consensus 331 ~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 331 EDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT-LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp HHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 999999987654 6778999999999999999999999999987544 67788899999999999999999999998754
Q ss_pred CCc------HHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 045674 563 IIP------ETAFEDMITCLCKT----------GRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHS 626 (650)
Q Consensus 563 ~~~------~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 626 (650)
+.+ ...+..++.++... |++++|+..++++++.. +.+..++..++.+|.+.|++++|++.+++
T Consensus 409 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 487 (537)
T 3fp2_A 409 EVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFED 487 (537)
T ss_dssp HHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 432 23356667888888 99999999999999986 77889999999999999999999999999
Q ss_pred HHHCCCCChhhh
Q 045674 627 KIGVGYDRMGSI 638 (650)
Q Consensus 627 ~~~~~~~~~~~~ 638 (650)
+++..+......
T Consensus 488 al~~~~~~~~~~ 499 (537)
T 3fp2_A 488 SAILARTMDEKL 499 (537)
T ss_dssp HHHHC--CHHHH
T ss_pred HHHhCCCcHHHH
Confidence 999988765543
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.95 E-value=1.2e-24 Score=223.04 Aligned_cols=366 Identities=14% Similarity=0.070 Sum_probs=241.8
Q ss_pred HHHHHHHHhcCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045674 236 SELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDE 315 (650)
Q Consensus 236 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 315 (650)
+...+..+.... +.+...+..++..|.+.|++++|+.+|+++.+.. +.+..++..++.++...|++++|...|+++.+
T Consensus 11 ~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 88 (450)
T 2y4t_A 11 VDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ 88 (450)
T ss_dssp -------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 333444444332 3456667777777777777777777777776643 33566677777777777777777777777766
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 045674 316 KGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNV---AIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDE 392 (650)
Q Consensus 316 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~ 392 (650)
.+. .+..++..++.+|.+.|++++|...|+++.+... .+. ..+..++..+...
T Consensus 89 ~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~---------------------- 144 (450)
T 2y4t_A 89 LKM-DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP-SENEEKEAQSQLIKSDEMQ---------------------- 144 (450)
T ss_dssp HCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHHH----------------------
T ss_pred cCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHHH----------------------
Confidence 542 2456666666777777777777777776665421 122 3444443331111
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 045674 393 VTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDAL 472 (650)
Q Consensus 393 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 472 (650)
.+..+...+...|++++|+..|+.+.+..+. +..++..++.+|...|++++|..+|+++.+.. +.+..++..++.+|
T Consensus 145 -~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 221 (450)
T 2y4t_A 145 -RLRSQALNAFGSGDYTAAIAFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLY 221 (450)
T ss_dssp -HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 1122233466677777777777777665443 66677777777777777777777777777653 55677777777777
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHH
Q 045674 473 AKCGKLDEALALFKRMEDEGCDQTVYTYTIL------------INGMFKEHRNEEALKLWDMMIDKGITPT----AASFR 536 (650)
Q Consensus 473 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~~~~~~A~~~~~~~~~~~~~p~----~~~~~ 536 (650)
...|++++|+..|+++.+..+. +...+..+ +..+...|++++|..+|+++++..+. + ...+.
T Consensus 222 ~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~ 299 (450)
T 2y4t_A 222 YQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKE 299 (450)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHH
Confidence 7777777777777777765433 44444444 67788888888888888888875332 2 34677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH------
Q 045674 537 ALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINA------ 610 (650)
Q Consensus 537 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~------ 610 (650)
.++.++.+.|++++|..+++++.+..+.+..++..++.++...|++++|.+.++++++.. |.+..++..++.+
T Consensus 300 ~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~ 378 (450)
T 2y4t_A 300 RICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLEKAQRLLKQ 378 (450)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHhhc
Confidence 788888888888888888888888777788888888888888888888888888888775 5667777777733
Q ss_pred ------HHhcC-----CHHHHHHHHHH-HHHCCCC
Q 045674 611 ------LRKAG-----NADLAIKLMHS-KIGVGYD 633 (650)
Q Consensus 611 ------~~~~g-----~~~~A~~~~~~-~~~~~~~ 633 (650)
|...| +.+++++.|++ +++..|+
T Consensus 379 ~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd 413 (450)
T 2y4t_A 379 SQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPD 413 (450)
T ss_dssp HHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGG
T ss_pred ccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCC
Confidence 33344 56777888886 6666554
No 12
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.95 E-value=2.7e-24 Score=220.36 Aligned_cols=388 Identities=9% Similarity=0.047 Sum_probs=287.0
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHH
Q 045674 199 EELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAM 278 (650)
Q Consensus 199 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 278 (650)
..+...+.+..... +.+...+..+...+.+.|++++|..+|+++.+.. +.+..+|..++..|...|++++|+..|+++
T Consensus 9 ~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 86 (450)
T 2y4t_A 9 SGVDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKV 86 (450)
T ss_dssp ---------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cccccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 34555566655542 4467889999999999999999999999998753 457889999999999999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc
Q 045674 279 EARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPS---HAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQP 355 (650)
Q Consensus 279 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 355 (650)
.+.+ +.+..++..++.++...|++++|...|+++.+.... +. ..+..++..+.
T Consensus 87 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~---------------------- 142 (450)
T 2y4t_A 87 IQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDE---------------------- 142 (450)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHH----------------------
T ss_pred HhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHH----------------------
Confidence 9875 346889999999999999999999999999986432 33 45555544321
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 045674 356 NVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLID 435 (650)
Q Consensus 356 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 435 (650)
...+..++..+...|++++|+.+|+++.+.. ..+...+..+..+|...|++++|+..|+.+.+..+. +..++..++.
T Consensus 143 -~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 219 (450)
T 2y4t_A 143 -MQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKND-NTEAFYKIST 219 (450)
T ss_dssp -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCS-CHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 1123345666777888888888888877643 225667777888888888888888888887776544 6777888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHcCCCCC----HHH
Q 045674 436 GLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVL------------IDALAKCGKLDEALALFKRMEDEGCDQT----VYT 499 (650)
Q Consensus 436 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~ 499 (650)
+|...|++++|...|+++.... +.+...+..+ +..+.+.|++++|...|+++.+..+. + ...
T Consensus 220 ~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~ 297 (450)
T 2y4t_A 220 LYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRS 297 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHH
Confidence 8888888888888888888764 4555555554 78888999999999999999886433 3 447
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHH----
Q 045674 500 YTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITC---- 575 (650)
Q Consensus 500 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~---- 575 (650)
+..++.++.+.|++++|+..++++.+..+. +...+..++.+|...|++++|...++++++..|.+..++..++.+
T Consensus 298 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 376 (450)
T 2y4t_A 298 KERICHCFSKDEKPVEAIRVCSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLL 376 (450)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHh
Confidence 788888899999999999999999876433 678899999999999999999999999999888888888888754
Q ss_pred --------HHHcC-----CHHHHHHHHHH-HHHcCCC---CCH-------HHHHHHHHHHHhcCCHHH
Q 045674 576 --------LCKTG-----RIKEACKLADG-IVDRERE---IPG-------KIRTALINALRKAGNADL 619 (650)
Q Consensus 576 --------~~~~g-----~~~~A~~~~~~-~~~~~~~---~~~-------~~~~~l~~~~~~~g~~~~ 619 (650)
|...| +.+++.+.|++ +++.. | ++. ..+..+..+|-..|+.++
T Consensus 377 ~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~-pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 377 KQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWH-PDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp HHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSC-GGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred hcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhC-CCCCCCchHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 33334 56677888886 44432 1 111 244555566665555444
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.93 E-value=2.4e-22 Score=199.01 Aligned_cols=320 Identities=13% Similarity=0.067 Sum_probs=188.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 045674 286 DKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALID 365 (650)
Q Consensus 286 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 365 (650)
+...+..+...+...|++++|...|+++.+... .+..++..++..+...|++++|...++++++.. +.+...+..++.
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 345677778888888888888888888877643 366778888888888888888888888887763 225667777888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCC----CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 045674 366 SYAKLGSMNEAINIFERMKYEGVEP----DEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAG 441 (650)
Q Consensus 366 ~~~~~~~~~~A~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 441 (650)
++...|++++|+..|+++.+. .| +...+..+...+. ...+..++..+...|
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~ 134 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGA 134 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTT
T ss_pred HHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHcc
Confidence 888888888888888888765 34 2223333311000 001122334455555
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 045674 442 RVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWD 521 (650)
Q Consensus 442 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 521 (650)
++++|...++++.+.. +.+...+..++.++...|++++|...++++.+..+. +..++..++..+...|++++|...++
T Consensus 135 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~ 212 (359)
T 3ieg_A 135 DYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSD-NTEAFYKISTLYYQLGDHELSLSEVR 212 (359)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSC-CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5555555555555543 444555555555555555555555555555544322 44555555555555555555555555
Q ss_pred HHHHCCCCCCHHHHH------------HHHHHHHhcCCHHHHHHHHHHHhhCCCCcH----HHHHHHHHHHHHcCCHHHH
Q 045674 522 MMIDKGITPTAASFR------------ALSIGLCLSGKVARACKILDELAPKGIIPE----TAFEDMITCLCKTGRIKEA 585 (650)
Q Consensus 522 ~~~~~~~~p~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A 585 (650)
++.+..+. +...+. .++..+...|++++|...++++.+..+.+. ..+..++.++...|++++|
T Consensus 213 ~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 291 (359)
T 3ieg_A 213 ECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEA 291 (359)
T ss_dssp HHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHH
Confidence 55543222 222221 224455566666666666666665555533 2244456666666666666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCChh
Q 045674 586 CKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYDRMG 636 (650)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 636 (650)
++.++++++.. +.+..++..++.++...|++++|...++++++..+....
T Consensus 292 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 341 (359)
T 3ieg_A 292 IRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQ 341 (359)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHH
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChH
Confidence 66666666654 445566666666666666666666666666666555433
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.93 E-value=9.5e-22 Score=194.70 Aligned_cols=334 Identities=14% Similarity=0.071 Sum_probs=259.7
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 045674 251 DVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIG 330 (650)
Q Consensus 251 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 330 (650)
++..+..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..++.
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 45678889999999999999999999998864 3468899999999999999999999999999874 336788999999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCC--cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCH
Q 045674 331 GLCKVGKCIEGHAIFESMIRRGCQ--PNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERL 408 (650)
Q Consensus 331 ~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 408 (650)
.+...|++++|...|+.+.+.... .+...+..+...+. ...+..+...+...|++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 999999999999999999987320 13334433322211 11233345566777777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045674 409 EEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRM 488 (650)
Q Consensus 409 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 488 (650)
++|+..++.+.+..+. +...+..++.++...|++++|...++++.+.. +.+...+..++.+|...|++++|...++++
T Consensus 137 ~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 137 TAAITFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7777777777766544 66777777777888888888888888877764 667777778888888888888888888877
Q ss_pred HHcCCCCCHHHHH------------HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHH
Q 045674 489 EDEGCDQTVYTYT------------ILINGMFKEHRNEEALKLWDMMIDKGITPTA----ASFRALSIGLCLSGKVARAC 552 (650)
Q Consensus 489 ~~~~~~~~~~~~~------------~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~ 552 (650)
.+..+. +...+. .++..+...|++++|...++++.+..+. +. ..+..++.++...|++++|.
T Consensus 215 ~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 215 LKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHH
Confidence 776433 333332 2366688899999999999999876444 33 23556788899999999999
Q ss_pred HHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 045674 553 KILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKA 614 (650)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 614 (650)
..++++.+..+.+..++..++.++...|++++|.+.++++++.. |.+..++..+..+....
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 293 RICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHH
Confidence 99999999888899999999999999999999999999999886 66777777777765543
No 15
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.92 E-value=3.8e-20 Score=191.07 Aligned_cols=387 Identities=13% Similarity=0.043 Sum_probs=245.7
Q ss_pred CHHHHHHHHHHHHh----cCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHH----cCChhHHHHHHHHHHhCCCCCCH
Q 045674 216 SLYTYNFLMNGLVN----SMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCK----VGKTQKAMEKFRAMEARNVQPDK 287 (650)
Q Consensus 216 ~~~~~~~ll~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~ 287 (650)
+...+..+...|.. .+++++|...|++..+.+ +...+..|...|.. .+++++|.+.|++..+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 44444444444444 455555555555555432 34455555555555 555666666666555543 44
Q ss_pred HHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCcCHHH
Q 045674 288 ITYMTLIQACYL----EGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCK----VGKCIEGHAIFESMIRRGCQPNVAI 359 (650)
Q Consensus 288 ~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~ 359 (650)
..+..|...|.. .+++++|...|++..+.+ +...+..+..+|.. .++.++|.+.|++..+.| +...
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 445555555555 556666666666655543 34555555555555 566677777777666653 4556
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 045674 360 YTALIDSYAK----LGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCK----NERLEEAMQYFEFCRANGVAVNAMFYS 431 (650)
Q Consensus 360 ~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~ 431 (650)
+..|...|.. .+++++|+.+|++..+.+ +...+..+...|.. .+++++|..+|++..+.+ +...+.
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 259 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQF 259 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 6666666666 677777777777776643 44556666666664 667777777777766654 445556
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 045674 432 SLIDGLGK----AGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKC-----GKLDEALALFKRMEDEGCDQTVYTYTI 502 (650)
Q Consensus 432 ~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~ 502 (650)
.+..+|.. .++.++|+..|++..+.| +...+..+...|... +++++|+..|++..+.+ +...+..
T Consensus 260 ~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 333 (490)
T 2xm6_A 260 RLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQAN 333 (490)
T ss_dssp HHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHH
Confidence 66666666 677788888887777654 556667777777776 77888888888777763 4556666
Q ss_pred HHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Q 045674 503 LINGMFKEH---RNEEALKLWDMMIDKGITPTAASFRALSIGLCL----SGKVARACKILDELAPKGIIPETAFEDMITC 575 (650)
Q Consensus 503 l~~~~~~~~---~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 575 (650)
+...|...| ++++|++.|+++.+.+ +...+..++..|.. .+++++|.++|+++.+.+ ++.++..++.+
T Consensus 334 lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~ 408 (490)
T 2xm6_A 334 LGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEI 408 (490)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHH
T ss_pred HHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHH
Confidence 777776655 6778888888887753 56777777777777 778888888888887764 57777788888
Q ss_pred HHH----cCCHHHHHHHHHHHHHcCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 045674 576 LCK----TGRIKEACKLADGIVDRERE-I-PGKIRTALINALRKAGNADLAIKLMHSKIGVGYD 633 (650)
Q Consensus 576 ~~~----~g~~~~A~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 633 (650)
|.. .+++++|.+.|+++.+.+.. | +......++..+.. +.+.|.+..++..++.+.
T Consensus 409 y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~--~~~~a~~~a~~~~~~~~~ 470 (490)
T 2xm6_A 409 YYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK--QLQQAELLSQQYIEKYAP 470 (490)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH--HHHHHHHHHHHHHHHHCH
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh--HHHHHHHHHHHHHHHHHH
Confidence 877 78888888888888877521 1 44444455444332 345555555555554433
No 16
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.92 E-value=6.8e-20 Score=189.18 Aligned_cols=382 Identities=13% Similarity=0.080 Sum_probs=249.8
Q ss_pred CHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHhcCCCCCCh
Q 045674 181 TVSAANSLIKSFGG----LGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVN----SMFIESSELVFKVMENGKVGPDV 252 (650)
Q Consensus 181 ~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~A~~~~~~~~~~~~~~~~ 252 (650)
+...+..+...|.. .+++++|+.+|++..+.| +...+..|...|.. .+++++|...|++..+.+ +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 44444444444444 455555555555554432 34444444444544 455555555555555432 34
Q ss_pred hhHHHHHHHHHH----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHH
Q 045674 253 VTYNTMIKGYCK----VGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYL----EGDFDSCLSLYHEMDEKGIEIPSHA 324 (650)
Q Consensus 253 ~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 324 (650)
..+..|...|.. .+++++|+..|++..+.| +...+..|...|.. .+++++|.+.|++..+.+ +...
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 444555555555 455666666666655543 34455555555554 556666666666666553 4555
Q ss_pred HHHHHHHHHh----cCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHhHH
Q 045674 325 YNLVIGGLCK----VGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAK----LGSMNEAINIFERMKYEGVEPDEVTYG 396 (650)
Q Consensus 325 ~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~p~~~~~~ 396 (650)
+..+...|.. .++.++|...|++..+.| +...+..+...|.. .+++++|..+|++..+.+ +...+.
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 259 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQF 259 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 6666666665 667777777777766654 44556666666665 677777777777776643 445556
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 045674 397 VIISGLCK----NERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKA-----GRVDEAEELFEEMVEKGCPRDSYCYNV 467 (650)
Q Consensus 397 ~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~ 467 (650)
.+...|.. .++.++|+.+|++..+.+ +...+..+..+|... +++++|...+++..+.+ +...+..
T Consensus 260 ~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 333 (490)
T 2xm6_A 260 RLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQAN 333 (490)
T ss_dssp HHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHH
Confidence 66666666 778888888888777654 455666777777776 78888888888888864 5667788
Q ss_pred HHHHHHHcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 045674 468 LIDALAKCG---KLDEALALFKRMEDEGCDQTVYTYTILINGMFK----EHRNEEALKLWDMMIDKGITPTAASFRALSI 540 (650)
Q Consensus 468 l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 540 (650)
+..+|...| ++++|++.|++..+.+ +...+..|...|.. .+++++|...|+++.+.+ +...+..++.
T Consensus 334 lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~ 407 (490)
T 2xm6_A 334 LGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGE 407 (490)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 888887766 7888888898888863 67788888888887 789999999999988864 5677888888
Q ss_pred HHHh----cCCHHHHHHHHHHHhhCCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 045674 541 GLCL----SGKVARACKILDELAPKGII---PETAFEDMITCLCKTGRIKEACKLADGIVD 594 (650)
Q Consensus 541 ~~~~----~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 594 (650)
.|.. .+++++|..+|+++.+.++. +......++.++.. +.+.|.+..++..+
T Consensus 408 ~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~--~~~~a~~~a~~~~~ 466 (490)
T 2xm6_A 408 IYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK--QLQQAELLSQQYIE 466 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH--HHHHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh--HHHHHHHHHHHHHH
Confidence 8887 78999999999999988754 56666666655443 33444444444443
No 17
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.91 E-value=6.5e-20 Score=191.33 Aligned_cols=424 Identities=11% Similarity=0.035 Sum_probs=271.2
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 045674 144 SHNLECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFL 223 (650)
Q Consensus 144 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 223 (650)
|.+..+|..++. +.+.|++++|+.+|+++++.. |.+...|..++..+.+.|++++|..+|+++... .|+...|..+
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~ 85 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCY 85 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHH
Confidence 456677777776 366777777777777777653 556677777777777777777777777777765 2466666555
Q ss_pred HHHH-HhcCChhHHHH----HHHHHhc-CCCC-CChhhHHHHHHHHHH---------cCChhHHHHHHHHHHhCCCCCCH
Q 045674 224 MNGL-VNSMFIESSEL----VFKVMEN-GKVG-PDVVTYNTMIKGYCK---------VGKTQKAMEKFRAMEARNVQPDK 287 (650)
Q Consensus 224 l~~~-~~~~~~~~A~~----~~~~~~~-~~~~-~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~ 287 (650)
+... ...|+.+.|.+ +|++... .|.. .+...|...+....+ .|++++|..+|++.++. |..
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~---P~~ 162 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN---PMI 162 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS---CCT
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc---hhh
Confidence 5432 33455555443 5555433 1222 234455555554433 34455555555554441 111
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 045674 288 ITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSY 367 (650)
Q Consensus 288 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 367 (650)
. ....|..........|. ..+..++.
T Consensus 163 ~--------------------------------~~~~~~~~~~~e~~~~~-~~~~~~l~--------------------- 188 (530)
T 2ooe_A 163 N--------------------------------IEQLWRDYNKYEEGINI-HLAKKMIE--------------------- 188 (530)
T ss_dssp T--------------------------------HHHHHHHHHHHHHHHCH-HHHHHHHH---------------------
T ss_pred h--------------------------------HHHHHHHHHHHHHhhch-hHHHHHHH---------------------
Confidence 0 00111111100000000 00000000
Q ss_pred HhcCCHHHHHHHHHHH------HHCC---CCCC--------HHhHHHHHHHHHhc----CCH----HHHHHHHHHHHHCC
Q 045674 368 AKLGSMNEAINIFERM------KYEG---VEPD--------EVTYGVIISGLCKN----ERL----EEAMQYFEFCRANG 422 (650)
Q Consensus 368 ~~~~~~~~A~~~~~~~------~~~~---~~p~--------~~~~~~l~~~~~~~----g~~----~~a~~~~~~~~~~~ 422 (650)
.+.+++..|..++.++ .+.. +.|+ ...|...+...... ++. +.+..+|+++....
T Consensus 189 ~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~ 268 (530)
T 2ooe_A 189 DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL 268 (530)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC
Confidence 0112233333333321 1110 1222 12333333222211 222 36777888887765
Q ss_pred CCCCHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045674 423 VAVNAMFYSSLIDGLGK-------AGRVD-------EAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRM 488 (650)
Q Consensus 423 ~~~~~~~~~~l~~~~~~-------~~~~~-------~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 488 (650)
+. +...|..++..+.+ .|+++ +|..++++.++.-.|.+...|..++..+.+.|++++|..+|+++
T Consensus 269 p~-~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~a 347 (530)
T 2ooe_A 269 GH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRL 347 (530)
T ss_dssp TT-CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CC-CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 44 77888888887775 68876 89999999987324667899999999999999999999999999
Q ss_pred HHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHhhCCCCcH
Q 045674 489 EDEGCDQT-VYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIG-LCLSGKVARACKILDELAPKGIIPE 566 (650)
Q Consensus 489 ~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~ 566 (650)
++..+. + ...|..++..+.+.|++++|..+|+++.+.... +...+...+.. +...|++++|..+|+++++..|.+.
T Consensus 348 l~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~ 425 (530)
T 2ooe_A 348 LAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIP 425 (530)
T ss_dssp HHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCH
T ss_pred hCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCH
Confidence 986432 3 357888888888999999999999999976332 34444443333 3368999999999999999988899
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 045674 567 TAFEDMITCLCKTGRIKEACKLADGIVDREREIP----GKIRTALINALRKAGNADLAIKLMHSKIGVGY 632 (650)
Q Consensus 567 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 632 (650)
.+|..++..+.+.|+.++|..+|+++++.+ +.+ ...|...+......|+.+.+..+.+++++.-+
T Consensus 426 ~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~-~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 426 EYVLAYIDYLSHLNEDNNTRVLFERVLTSG-SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp HHHHHHHHHHTTTTCHHHHHHHHHHHHHSC-CSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHhCCCHhhHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 999999999999999999999999999874 323 34888888888999999999999999998766
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.90 E-value=2.6e-21 Score=189.12 Aligned_cols=292 Identities=9% Similarity=-0.056 Sum_probs=209.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 045674 321 PSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIIS 400 (650)
Q Consensus 321 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 400 (650)
+...+..++..+...|++++|..+|+++.+... .+...+..++..+...|++++|..+++++.+... .+...+..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHH
Confidence 444555666666666666666666666665522 2333444556666677777777777777665421 24556666666
Q ss_pred HHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 045674 401 GLCKNE-RLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLD 479 (650)
Q Consensus 401 ~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 479 (650)
.+...| ++++|...|+++.+..+. +...+..++.++...|++++|...++++.+.. +.+...+..++..|...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 777777 777777777777766544 55667777777888888888888888877764 455666777788888888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHhcCCHHHH
Q 045674 480 EALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKG--------ITPTAASFRALSIGLCLSGKVARA 551 (650)
Q Consensus 480 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~p~~~~~~~l~~~~~~~g~~~~A 551 (650)
+|...++++.+..+. +...+..++..+...|++++|...++++.+.. ......++..++.++...|++++|
T Consensus 177 ~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 888888888776543 67777788888888888888888888877531 123456788888888888999999
Q ss_pred HHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HhcCCHH
Q 045674 552 CKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINAL-RKAGNAD 618 (650)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~ 618 (650)
...++++.+..+.+..++..++.++...|++++|.+.++++++.. +.+..++..++.++ ...|+.+
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence 999988888878888888888999999999999999999888775 66778888888877 4556544
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.90 E-value=3.8e-21 Score=187.95 Aligned_cols=283 Identities=11% Similarity=-0.012 Sum_probs=246.3
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 045674 354 QPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSL 433 (650)
Q Consensus 354 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 433 (650)
..+...+..++..+...|++++|+.+|+++.+... .+...+..++..+...|++++|...++++.+..+. +...+..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHH
Confidence 33555667788899999999999999999987632 24556777888899999999999999999987665 67788899
Q ss_pred HHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 045674 434 IDGLGKAG-RVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHR 512 (650)
Q Consensus 434 ~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 512 (650)
+..+...| ++++|...|+++.+.. +.+...+..++.++...|++++|+..++++.+..+. +...+..++..+...|+
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhh
Confidence 99999999 9999999999999875 667889999999999999999999999999987554 56677789999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC---------CCcHHHHHHHHHHHHHcCCHH
Q 045674 513 NEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKG---------IIPETAFEDMITCLCKTGRIK 583 (650)
Q Consensus 513 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~ 583 (650)
+++|...++++.+..+. +...+..++..+...|++++|..+++++.+.. +....++..++.++...|+++
T Consensus 175 ~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 175 SKLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 99999999999987554 78889999999999999999999999998753 335679999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCChhhhhhhh
Q 045674 584 EACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYDRMGSIKRRV 642 (650)
Q Consensus 584 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 642 (650)
+|++.++++++.. +.+..++..++.++.+.|++++|.+.++++++..+........+.
T Consensus 254 ~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 311 (330)
T 3hym_B 254 EALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLG 311 (330)
T ss_dssp HHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHH
T ss_pred HHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHH
Confidence 9999999999986 778899999999999999999999999999999887655554444
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.89 E-value=2.8e-21 Score=192.09 Aligned_cols=289 Identities=11% Similarity=-0.001 Sum_probs=204.1
Q ss_pred cCChHHHHH-HHHHHHHcCCC-c--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHH
Q 045674 335 VGKCIEGHA-IFESMIRRGCQ-P--NVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEE 410 (650)
Q Consensus 335 ~g~~~~a~~-~~~~~~~~~~~-~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 410 (650)
.|++++|.. .+++....... | +...+..++..+...|++++|+.+|+++.+.. ..+...+..+..++...|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 355555555 55544432111 1 22334456666666666666666666666542 1244556666666666666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH----------------HHHHHHHH
Q 045674 411 AMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYN----------------VLIDALAK 474 (650)
Q Consensus 411 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~----------------~l~~~~~~ 474 (650)
|+..|+++.+..+. +..++..++.++...|++++|...++++.... +.+...+. .+...+ .
T Consensus 117 A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 193 (368)
T 1fch_A 117 AISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRILGSLL-S 193 (368)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC---------------CTTHHHH-H
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHHHHHHHHh-h
Confidence 66666666655443 55566666666666666666666666666643 22222221 233344 8
Q ss_pred cCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 045674 475 CGKLDEALALFKRMEDEGCDQ-TVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACK 553 (650)
Q Consensus 475 ~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 553 (650)
.|++++|...++++.+..+.. +..++..++..+...|++++|+..++++++..+. +...+..++.++...|++++|..
T Consensus 194 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~ 272 (368)
T 1fch_A 194 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVA 272 (368)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHHHHHH
Confidence 899999999999998875432 5788999999999999999999999999986443 67889999999999999999999
Q ss_pred HHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-----------HHHHHHHHHHHHhcCCHHHHHH
Q 045674 554 ILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIP-----------GKIRTALINALRKAGNADLAIK 622 (650)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~A~~ 622 (650)
.++++++..+.+..++..++.++...|++++|.+.++++++.. +.+ ..+|..++.+|...|++++|..
T Consensus 273 ~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 351 (368)
T 1fch_A 273 AYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ-RKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 351 (368)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCCCccccccchhhHHHHHHHHHHHHhCChHhHHH
Confidence 9999999888889999999999999999999999999998874 333 6889999999999999999999
Q ss_pred HHHHHHH
Q 045674 623 LMHSKIG 629 (650)
Q Consensus 623 ~~~~~~~ 629 (650)
++++.++
T Consensus 352 ~~~~~l~ 358 (368)
T 1fch_A 352 ADARDLS 358 (368)
T ss_dssp HHTTCHH
T ss_pred hHHHHHH
Confidence 8886554
No 21
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.88 E-value=5.3e-18 Score=176.87 Aligned_cols=428 Identities=10% Similarity=0.083 Sum_probs=286.0
Q ss_pred CCChHHHHHHHHhccCCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 045674 108 KLSPNFVSFVLRNHDVSKRPNVGLRLFTWAARQKKYSHNLECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANS 187 (650)
Q Consensus 108 ~~~~~~~~~~l~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 187 (650)
+.+.+.....++. ...|+.+.|..+|+.+... +|.+...|...+..+.+.|++++|+.+|++++... |+...|..
T Consensus 10 P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~--~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~ 84 (530)
T 2ooe_A 10 PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQ--FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKC 84 (530)
T ss_dssp TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHH
T ss_pred CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHH
Confidence 3445555555554 4578999999999999876 67789999999999999999999999999999873 58888888
Q ss_pred HHHHH-HcCCCHHHHHH----HHHHHHHC-CCCC-CHHHHHHHHHHHHh---------cCChhHHHHHHHHHhcCCCCCC
Q 045674 188 LIKSF-GGLGMVEELLW----VWRSMKEN-GIEP-SLYTYNFLMNGLVN---------SMFIESSELVFKVMENGKVGPD 251 (650)
Q Consensus 188 l~~~~-~~~g~~~~a~~----~~~~~~~~-~~~~-~~~~~~~ll~~~~~---------~~~~~~A~~~~~~~~~~~~~~~ 251 (650)
++... ...|+.+.|.+ +|++.... |..+ +...|...+..... .|+++.|..+|++.++. +.+
T Consensus 85 ~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~--P~~ 162 (530)
T 2ooe_A 85 YLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN--PMI 162 (530)
T ss_dssp HHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS--CCT
T ss_pred HHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc--hhh
Confidence 77543 45677766655 77776653 5443 56677777776654 68899999999999973 211
Q ss_pred --hhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH------CC---CCC
Q 045674 252 --VVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDE------KG---IEI 320 (650)
Q Consensus 252 --~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~~---~~~ 320 (650)
...|..........|. .+...++. ...++++.|..+++++.. .. ++|
T Consensus 163 ~~~~~~~~~~~~e~~~~~--------------------~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p 220 (530)
T 2ooe_A 163 NIEQLWRDYNKYEEGINI--------------------HLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPP 220 (530)
T ss_dssp THHHHHHHHHHHHHHHCH--------------------HHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCC
T ss_pred hHHHHHHHHHHHHHhhch--------------------hHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCC
Confidence 1223222221111110 11111111 123445666665554221 10 111
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh----cCCH----HHHHHHHHHHHHCCCCCCH
Q 045674 321 PSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAK----LGSM----NEAINIFERMKYEGVEPDE 392 (650)
Q Consensus 321 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~----~~A~~~~~~~~~~~~~p~~ 392 (650)
+.. ...... ...|...+..... .++. .++..+|+++.... .-+.
T Consensus 221 ~~~------------~~~~~~---------------~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~ 272 (530)
T 2ooe_A 221 QNT------------PQEAQQ---------------VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHP 272 (530)
T ss_dssp C--------------CCHHHH---------------HHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCH
T ss_pred CCC------------hhHHHH---------------HHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCH
Confidence 100 000000 1122222211111 1121 35666677666541 2245
Q ss_pred HhHHHHHHHHHh-------cCCHH-------HHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 045674 393 VTYGVIISGLCK-------NERLE-------EAMQYFEFCRA-NGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKG 457 (650)
Q Consensus 393 ~~~~~l~~~~~~-------~g~~~-------~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 457 (650)
..|..++..+.+ .|+++ +|..+|++..+ ..+. +...|..++..+.+.|++++|..+|+++++..
T Consensus 273 ~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~-~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~ 351 (530)
T 2ooe_A 273 DIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK-NMLLYFAYADYEESRMKYEKVHSIYNRLLAIE 351 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc
Confidence 666666666654 67766 88888888886 3333 67888888888889999999999999998863
Q ss_pred CCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 045674 458 CPRDS-YCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILING-MFKEHRNEEALKLWDMMIDKGITPTAASF 535 (650)
Q Consensus 458 ~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~~~~~~~~p~~~~~ 535 (650)
+.+. ..|..++..+.+.|++++|.++|++..+.... +...|...+.. +...|++++|..+|+++++..+. +...+
T Consensus 352 -p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~-~~~~~ 428 (530)
T 2ooe_A 352 -DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYV 428 (530)
T ss_dssp -SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT-CHHHH
T ss_pred -ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCC-CHHHH
Confidence 3343 58888888888899999999999999886332 33333333222 33689999999999999876443 67888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 045674 536 RALSIGLCLSGKVARACKILDELAPKGIIPE----TAFEDMITCLCKTGRIKEACKLADGIVDRE 596 (650)
Q Consensus 536 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 596 (650)
..++..+.+.|+.++|..+|++++..++.++ .+|...+......|+.+.+..+++++.+.-
T Consensus 429 ~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 429 LAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 493 (530)
T ss_dssp HHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 8999999999999999999999998765543 488888888889999999999999998763
No 22
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.88 E-value=3.1e-17 Score=176.30 Aligned_cols=221 Identities=13% Similarity=0.128 Sum_probs=98.1
Q ss_pred hcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 045674 229 NSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLS 308 (650)
Q Consensus 229 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 308 (650)
..+++++|.++.++.. +..+|..+..++...|++++|++.|.+. -|...|..++..+.+.|++++|.+
T Consensus 1088 ~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIe 1155 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 1155 (1630)
T ss_pred HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHH
Confidence 3444445444444331 2344445555555555555555554332 133444445555555555555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 045674 309 LYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGV 388 (650)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 388 (650)
.+...++... +......++.+|.+.+++++...+. + .++...|..++..|...|++++|..+|..+
T Consensus 1156 yL~mArk~~~--e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA----- 1221 (1630)
T 1xi4_A 1156 YLQMARKKAR--ESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 1221 (1630)
T ss_pred HHHHHHhhcc--cccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----
Confidence 5544443321 1112223444444444444322221 1 123333444445555555555555555443
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 045674 389 EPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVL 468 (650)
Q Consensus 389 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 468 (650)
..|..+...+++.|++++|.+.+++. .+..+|..+..+|...|++..|......+ ..++..+..+
T Consensus 1222 ----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeel 1286 (1630)
T 1xi4_A 1222 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEEL 1286 (1630)
T ss_pred ----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHH
Confidence 14444555555555555555555443 13344444444455555544444433321 1233344444
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 045674 469 IDALAKCGKLDEALALFKRMED 490 (650)
Q Consensus 469 ~~~~~~~g~~~~A~~~~~~~~~ 490 (650)
+..|.+.|.+++|+.+++..+.
T Consensus 1287 i~yYe~~G~feEAI~LlE~aL~ 1308 (1630)
T 1xi4_A 1287 INYYQDRGYFEELITMLEAALG 1308 (1630)
T ss_pred HHHHHHcCCHHHHHHHHHHHhc
Confidence 5555555555555555544443
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.87 E-value=2.3e-20 Score=185.52 Aligned_cols=307 Identities=14% Similarity=0.037 Sum_probs=197.4
Q ss_pred HHHHcCChhHHHH-HHHHHHhCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 045674 261 GYCKVGKTQKAME-KFRAMEARNV---QPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVG 336 (650)
Q Consensus 261 ~~~~~g~~~~A~~-~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 336 (650)
.+...|++++|.+ .+++...... ..+...+..+...+...|++++|...|+++.+.. +.+..++..++.++...|
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCc
Confidence 3444456666665 5554433211 1123445555666666666666666666666553 224555555666666666
Q ss_pred ChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHH
Q 045674 337 KCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEV-TYGVIISGLCKNERLEEAMQYF 415 (650)
Q Consensus 337 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~ 415 (650)
++++|...|+++++.. +.+..++..++.+|...|++++|+..|+++.... |+.. .+..+... ..
T Consensus 113 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~-------~~----- 177 (368)
T 1fch_A 113 QELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEG-------AG----- 177 (368)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC-------------------
T ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHH-------hh-----
Confidence 6666666666665542 2245555555666666666666666666655542 2111 11100000 00
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 045674 416 EFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPR--DSYCYNVLIDALAKCGKLDEALALFKRMEDEGC 493 (650)
Q Consensus 416 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 493 (650)
... ....+..+...+ ..|++++|...++++.+.. +. +..++..++.+|.+.|++++|+..++++.+..+
T Consensus 178 ------~~~-~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 248 (368)
T 1fch_A 178 ------GAG-LGPSKRILGSLL-SDSLFLEVKELFLAAVRLD-PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP 248 (368)
T ss_dssp ---------------CTTHHHH-HHHHHHHHHHHHHHHHHHS-TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred ------hhc-ccHHHHHHHHHh-hcccHHHHHHHHHHHHHhC-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 000 001111233333 8889999999999999875 44 688899999999999999999999999988754
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc--------
Q 045674 494 DQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIP-------- 565 (650)
Q Consensus 494 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------- 565 (650)
. +..++..++.++...|++++|...++++++..+. +...+..++.++...|++++|...++++.+..+.+
T Consensus 249 ~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 326 (368)
T 1fch_A 249 N-DYLLWNKLGATLANGNQSEEAVAAYRRALELQPG-YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGG 326 (368)
T ss_dssp T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CC
T ss_pred C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCcccccc
Confidence 3 6788999999999999999999999999886443 67888999999999999999999999998766654
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 045674 566 ---ETAFEDMITCLCKTGRIKEACKLADGIVD 594 (650)
Q Consensus 566 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 594 (650)
..+|..++.++...|++++|..++++.++
T Consensus 327 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 327 AMSENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp CCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred chhhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 78999999999999999999998876543
No 24
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.87 E-value=5e-19 Score=182.30 Aligned_cols=214 Identities=14% Similarity=0.030 Sum_probs=128.0
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-----------
Q 045674 406 ERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAK----------- 474 (650)
Q Consensus 406 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------- 474 (650)
|++++|.+.+++.....+. +..++..++..|...|++++|...++++.+.. |.+..++..++.+|..
T Consensus 227 ~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~ 304 (472)
T 4g1t_A 227 EEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLREN 304 (472)
T ss_dssp ---CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred hHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 3444555555554444333 44444455555555555555555555555442 3344444444444322
Q ss_pred --------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHH-HHH
Q 045674 475 --------CGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAA--SFRALSI-GLC 543 (650)
Q Consensus 475 --------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~-~~~ 543 (650)
.+.++.|...+++..+..+. +..++..++..+...|++++|+..|+++++..+.+... .+..++. .+.
T Consensus 305 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~ 383 (472)
T 4g1t_A 305 GMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLY 383 (472)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 23467788888888776544 55667888999999999999999999999865443221 2333333 345
Q ss_pred hcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 045674 544 LSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKL 623 (650)
Q Consensus 544 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 623 (650)
..|++++|+..|+++++..+.+..... ....+.+++++.++.+ |.+..+|..++.+|...|++++|++.
T Consensus 384 ~~~~~~~Ai~~y~kal~i~~~~~~~~~----------~~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~ 452 (472)
T 4g1t_A 384 QMKCEDKAIHHFIEGVKINQKSREKEK----------MKDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADED 452 (472)
T ss_dssp TSSCHHHHHHHHHHHHHSCCCCHHHHH----------HHHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC-----
T ss_pred HCCCHHHHHHHHHHHHhcCcccHHHHH----------HHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 789999999999999998777543222 2345567778888776 77889999999999999999999999
Q ss_pred HHHHHHCCCC
Q 045674 624 MHSKIGVGYD 633 (650)
Q Consensus 624 ~~~~~~~~~~ 633 (650)
|+++++.|+.
T Consensus 453 y~kALe~~~~ 462 (472)
T 4g1t_A 453 SERGLESGSL 462 (472)
T ss_dssp ----------
T ss_pred HHHHHhcCCC
Confidence 9999998876
No 25
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.86 E-value=1.3e-16 Score=171.49 Aligned_cols=411 Identities=11% Similarity=0.066 Sum_probs=292.8
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 045674 145 HNLECYISLIDCLALCGDVDRVRLVFNELKEKG--FLMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNF 222 (650)
Q Consensus 145 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 222 (650)
.+++--...+..|...|.+.+|+++++++.-.+ +..+....+.|+....+. +..+..++..++... + ..-
T Consensus 983 ~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~e 1054 (1630)
T 1xi4_A 983 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APD 1054 (1630)
T ss_pred cCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHH
Confidence 355556678888888888889998888888432 113445566677666665 445555555555422 1 233
Q ss_pred HHHHHHhcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 045674 223 LMNGLVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGD 302 (650)
Q Consensus 223 ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 302 (650)
+...+...|.+++|..+|++.. ......+.++ ...+++++|.++.++.. +..+|..+..++...|+
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLi---e~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~ 1120 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFD-----VNTSAVQVLI---EHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGM 1120 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHH---HHHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCC
Confidence 6667788899999999998853 1222233333 26688888888888652 46788889999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 045674 303 FDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFER 382 (650)
Q Consensus 303 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 382 (650)
+++|.+.|.+. .+...|..++..+.+.|++++|.+++....+.. ++....+.++.+|++.+++++...+.
T Consensus 1121 ~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI-- 1190 (1630)
T 1xi4_A 1121 VKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI-- 1190 (1630)
T ss_pred HHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH--
Confidence 99999988653 367788888999999999999999998877764 23333345888888888888544332
Q ss_pred HHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 045674 383 MKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDS 462 (650)
Q Consensus 383 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 462 (650)
. .++...|..+...|...|++++|..+|..+ ..|..++..+.+.|++++|.+.+++. .+.
T Consensus 1191 --~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~ 1250 (1630)
T 1xi4_A 1191 --N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NST 1250 (1630)
T ss_pred --h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCH
Confidence 2 345566777888888999999999999874 36888889999999999999888875 456
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 045674 463 YCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGL 542 (650)
Q Consensus 463 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 542 (650)
.+|..+..+|...|++..|......+. .+...+..++..|...|.+++|+.+++..+... .-....|..++..+
T Consensus 1251 ~aWkev~~acve~~Ef~LA~~cgl~Ii-----v~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLy 1324 (1630)
T 1xi4_A 1251 RTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILY 1324 (1630)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhhh-----cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHH
Confidence 788888888888888888887665432 256667788888889999999999998887654 22455666666666
Q ss_pred Hh--cCCHHHHHHHHHHHhhCCC-----CcHHHHHHHHHHHHHcCCHHHHHHHH-------------HHHHHcCCCCCHH
Q 045674 543 CL--SGKVARACKILDELAPKGI-----IPETAFEDMITCLCKTGRIKEACKLA-------------DGIVDREREIPGK 602 (650)
Q Consensus 543 ~~--~g~~~~A~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~-------------~~~~~~~~~~~~~ 602 (650)
.+ -++..++.++|..-.+..+ .....|..++..|.+.|+++.|.... +..+. ...+.+
T Consensus 1325 aKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~--kv~n~e 1402 (1630)
T 1xi4_A 1325 SKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT--KVANVE 1402 (1630)
T ss_pred HhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhc--ccccHH
Confidence 54 4567777777776665433 25678888999999999999888332 22221 245677
Q ss_pred HHHHHHHHHHhcC
Q 045674 603 IRTALINALRKAG 615 (650)
Q Consensus 603 ~~~~l~~~~~~~g 615 (650)
.|...+.-|...+
T Consensus 1403 lyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1403 LYYRAIQFYLEFK 1415 (1630)
T ss_pred HHHHHHHHHHhhC
Confidence 7777777777544
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.86 E-value=5e-20 Score=182.78 Aligned_cols=263 Identities=13% Similarity=0.020 Sum_probs=194.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 045674 359 IYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLG 438 (650)
Q Consensus 359 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 438 (650)
.+..++..+.+.|++++|+.+|+++.... ..+...+..+...+...|++++|+..|+++.+..+. +..++..++.+|.
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMALAVSYT 144 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHH
Confidence 35556666666666666666666666542 124556666666666666777777766666665443 5666667777777
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHH
Q 045674 439 KAGRVDEAEELFEEMVEKGCPRD----------SYCYNVLIDALAKCGKLDEALALFKRMEDEGCD-QTVYTYTILINGM 507 (650)
Q Consensus 439 ~~~~~~~A~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~ 507 (650)
..|++++|...++++.+.. +.+ ...+..++..+...|++++|+..++++.+..+. .+..++..++..+
T Consensus 145 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 223 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLF 223 (365)
T ss_dssp HTTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHH
Confidence 7777777777777776642 111 223445578888899999999999999887543 2688899999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 045674 508 FKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACK 587 (650)
Q Consensus 508 ~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 587 (650)
...|++++|+..++++++..+. +..++..++.++...|++++|...++++++..|.+..++..++.++...|++++|++
T Consensus 224 ~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 302 (365)
T 4eqf_A 224 HLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVS 302 (365)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999999986544 788899999999999999999999999999888899999999999999999999999
Q ss_pred HHHHHHHcCCCC------------CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 045674 588 LADGIVDREREI------------PGKIRTALINALRKAGNADLAIKLMHS 626 (650)
Q Consensus 588 ~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 626 (650)
.++++++.. +. +..+|..++.++...|+.+.|....++
T Consensus 303 ~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 303 NFLTALSLQ-RKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHH-HCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHhC-cccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999998764 11 367899999999999999988877665
No 27
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.85 E-value=1.5e-19 Score=176.25 Aligned_cols=262 Identities=12% Similarity=-0.012 Sum_probs=178.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 045674 363 LIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGR 442 (650)
Q Consensus 363 l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 442 (650)
++..+...|++++|+.+|+++.+... .+...+..+...+...|++++|...++++.+..+. +..++..++..+...|+
T Consensus 27 ~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~ 104 (327)
T 3cv0_A 27 EGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHN 104 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-CHHHHHHHHHHHHHcCC
Confidence 34444444444444444444443211 13334444444444444444444444444443322 34444445555555555
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHH--------------HH-HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 045674 443 VDEAEELFEEMVEKGCPRDSYCYNVL--------------ID-ALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGM 507 (650)
Q Consensus 443 ~~~A~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 507 (650)
+++|...++++.+.. +.+...+..+ .. .+...|++++|...++++.+..+. +...+..++..+
T Consensus 105 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~ 182 (327)
T 3cv0_A 105 ANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLHASLGVLY 182 (327)
T ss_dssp HHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHH
Confidence 555555555554432 2222222221 22 366778899999999998887544 778888889999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 045674 508 FKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACK 587 (650)
Q Consensus 508 ~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 587 (650)
...|++++|...++++.+..+. +...+..++..+...|++++|...++++.+..+.+..++..++.++...|++++|.+
T Consensus 183 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 261 (327)
T 3cv0_A 183 NLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAK 261 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHH
Confidence 9999999999999998876443 678888999999999999999999999999888888999999999999999999999
Q ss_pred HHHHHHHcCCCC------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045674 588 LADGIVDREREI------------PGKIRTALINALRKAGNADLAIKLMHSKIGV 630 (650)
Q Consensus 588 ~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 630 (650)
.++++++.. +. +..++..++.++.+.|++++|...++++++.
T Consensus 262 ~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 315 (327)
T 3cv0_A 262 QLVRAIYMQ-VGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEP 315 (327)
T ss_dssp HHHHHHHHH-TTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHH
T ss_pred HHHHHHHhC-CccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 999998875 33 5778899999999999999999998866553
No 28
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.85 E-value=3.7e-18 Score=175.82 Aligned_cols=391 Identities=10% Similarity=-0.052 Sum_probs=218.0
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC--------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcC-----C
Q 045674 181 TVSAANSLIKSFGGLGMVEELLWVWRSMKEN--------GIEPSLYTYNFLMNGLVNSMFIESSELVFKVMENG-----K 247 (650)
Q Consensus 181 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~-----~ 247 (650)
....|+.|...+...|++++|++.|++..+. .......+|+.+..+|...|++++|...+++..+. +
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3456777777777788888888877766542 01223456666777777777777777777665431 0
Q ss_pred -CC-CChhhHHHHHHHHHHc--CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH---HhcCCHHHHHHHHHHHHHCCCCC
Q 045674 248 -VG-PDVVTYNTMIKGYCKV--GKTQKAMEKFRAMEARNVQPDKITYMTLIQAC---YLEGDFDSCLSLYHEMDEKGIEI 320 (650)
Q Consensus 248 -~~-~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~ 320 (650)
.. ....++..+..++... +++++|++.|++..+.++ -+...+..+..++ ...++.++|++.+++..+.+. .
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p-~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p-~ 207 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP-KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP-D 207 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS-S
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC-c
Confidence 01 1233444444444443 346677777776665431 1334444443332 234555666666666655432 2
Q ss_pred CHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHH
Q 045674 321 PSHAYNLVIGGLCK----VGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYG 396 (650)
Q Consensus 321 ~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~ 396 (650)
+..++..+...+.. .|++++|.+++++..... +.+..++..++..|...|++++|+..++++.+.... +..++.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~ 285 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHC 285 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHH
Confidence 34444444433332 345566666666666542 224555666666666666666666666666654211 334444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 045674 397 VIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCG 476 (650)
Q Consensus 397 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 476 (650)
.+...|...+... ..... ..........+.+++|...++...+.. +.+...+..++.+|...|
T Consensus 286 ~lg~~y~~~~~~~---------~~~~~-------~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~ 348 (472)
T 4g1t_A 286 QIGCCYRAKVFQV---------MNLRE-------NGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALAD 348 (472)
T ss_dssp HHHHHHHHHHHHH---------HHC-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh---------hhHHH-------HHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhc
Confidence 4444432211100 00000 000001112234678888999888875 566778889999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHH--HHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 045674 477 KLDEALALFKRMEDEGCDQTVY--TYTILIN-GMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACK 553 (650)
Q Consensus 477 ~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 553 (650)
++++|+..|++.++..+.+... .+..++. .....|++++|+..|+++++..+ +.... .+....+.+
T Consensus 349 ~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~--~~~~~---------~~~~~~l~~ 417 (472)
T 4g1t_A 349 QYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQ--KSREK---------EKMKDKLQK 417 (472)
T ss_dssp CHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCC--CCHHH---------HHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc--ccHHH---------HHHHHHHHH
Confidence 9999999999999875443221 2233332 23578999999999999998643 32221 223455677
Q ss_pred HHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 045674 554 ILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIR 604 (650)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 604 (650)
++++.++.+|.+..++..++.++...|++++|++.|+++++.+ +.++.+.
T Consensus 418 ~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~-~~~p~a~ 467 (472)
T 4g1t_A 418 IAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESG-SLIPSAS 467 (472)
T ss_dssp HHHHHHHHCC-CTTHHHHHHHHHHHHHHCC---------------------
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCCcHh
Confidence 7888888889899999999999999999999999999999876 4444433
No 29
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.85 E-value=6.5e-19 Score=167.31 Aligned_cols=277 Identities=14% Similarity=0.108 Sum_probs=180.5
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHH
Q 045674 330 GGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLE 409 (650)
Q Consensus 330 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 409 (650)
+-....|++..|+..++................+.++|...|+++.|+..++.. -.|+..++..+...+...|+.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHH
Confidence 445567777777777766544321111234455677777788887777655431 2445666777777777777778
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045674 410 EAMQYFEFCRANGVAV-NAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRM 488 (650)
Q Consensus 410 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 488 (650)
+|++.++++...+..| +...+..++.++...|++++|++.+++ +.+...+..++.+|.+.|++++|.+.|+++
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 8888877777664322 555666667777777888888777766 456777777777777778888888877777
Q ss_pred HHcCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc
Q 045674 489 EDEGCDQTVYTY---TILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIP 565 (650)
Q Consensus 489 ~~~~~~~~~~~~---~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 565 (650)
.+.. |+.... ..++..+...|++++|..+|+++++..+ .+...++.++.++.+.|++++|...++++++..|.+
T Consensus 157 ~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~ 233 (291)
T 3mkr_A 157 QDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS-PTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGH 233 (291)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 7764 232111 1122233344777777777777776633 366777777777777777888887777777777777
Q ss_pred HHHHHHHHHHHHHcCCHHH-HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 045674 566 ETAFEDMITCLCKTGRIKE-ACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLM 624 (650)
Q Consensus 566 ~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 624 (650)
+.++..++.++...|+.++ +.++++++++.+ |.++.+. +...+.+.++++..-|
T Consensus 234 ~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~-P~~~~~~----d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 234 PETLINLVVLSQHLGKPPEVTNRYLSQLKDAH-RSHPFIK----EYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-CCChHHH----HHHHHHHHHHHHHHHc
Confidence 7777777777777777755 467777777765 4444332 2344555555555433
No 30
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.84 E-value=8.6e-20 Score=181.07 Aligned_cols=265 Identities=11% Similarity=-0.007 Sum_probs=186.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHH
Q 045674 324 AYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLC 403 (650)
Q Consensus 324 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 403 (650)
.+..++..+.+.|++++|..+|+++++.. +.+...+..++.+|...|++++|+..|+++.... ..+..++..+...|.
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYT 144 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 35555555566666666666666665542 2245555666666666666666666666665542 113555666666666
Q ss_pred hcCCHHHHHHHHHHHHHCCCC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHH
Q 045674 404 KNERLEEAMQYFEFCRANGVA---------VNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPR--DSYCYNVLIDAL 472 (650)
Q Consensus 404 ~~g~~~~a~~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~ 472 (650)
..|++++|+..++++.+..+. .....+..++..+...|++++|...++++++.. +. +..++..++.+|
T Consensus 145 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~~~ 223 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQTGLGVLF 223 (365)
T ss_dssp HTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHHHHHHHH
Confidence 666666666666665553221 012334456778888999999999999999875 44 688899999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 045674 473 AKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARAC 552 (650)
Q Consensus 473 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 552 (650)
...|++++|+..|+++.+..+. +..+|..++.+|...|++++|+..++++++..+. +..++..++.+|...|++++|.
T Consensus 224 ~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 224 HLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCHHHHH
Confidence 9999999999999999887544 7888999999999999999999999999886544 6788899999999999999999
Q ss_pred HHHHHHhhCCCC------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 045674 553 KILDELAPKGII------------PETAFEDMITCLCKTGRIKEACKLADGIV 593 (650)
Q Consensus 553 ~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 593 (650)
..++++++..+. +..+|..++.++...|+.+.|.++.++.+
T Consensus 302 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l 354 (365)
T 4eqf_A 302 SNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDL 354 (365)
T ss_dssp HHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCC
T ss_pred HHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhH
Confidence 999999876543 36789999999999999999988877643
No 31
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.84 E-value=1.9e-18 Score=164.12 Aligned_cols=259 Identities=14% Similarity=0.085 Sum_probs=187.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 045674 364 IDSYAKLGSMNEAINIFERMKYEGVEPDE--VTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAG 441 (650)
Q Consensus 364 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 441 (650)
++-....|++..|+..++++... .|+. .....+.++|...|++++|+..++. . -.++..++..++..+...+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCC
Confidence 34455678888888887776543 3332 3445567788888888888876643 1 2346667777778888888
Q ss_pred CHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 045674 442 RVDEAEELFEEMVEKG-CPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLW 520 (650)
Q Consensus 442 ~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 520 (650)
+.++|++.+++++..+ .|.+...+..++.+|.+.|++++|++.+++ ..+...+..++..+.+.|++++|.+.+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 8888888888887765 355677777778888888888888888876 346777888888888888888888888
Q ss_pred HHHHHCCCCCCHH-HH--HHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 045674 521 DMMIDKGITPTAA-SF--RALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDRER 597 (650)
Q Consensus 521 ~~~~~~~~~p~~~-~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 597 (650)
+++.+.. |+.. .. ..++..+...|++++|..+|+++.+..|.+..+++.++.++...|++++|++.++++++.+
T Consensus 154 ~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~- 230 (291)
T 3mkr_A 154 KKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD- 230 (291)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 8888754 3322 11 1122333345788888888888888777788888888888888888888888888888876
Q ss_pred CCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHCCCCChhh
Q 045674 598 EIPGKIRTALINALRKAGNADL-AIKLMHSKIGVGYDRMGS 637 (650)
Q Consensus 598 ~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~ 637 (650)
|.++.++..++.++...|+.++ +.++++++++..|.....
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~ 271 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI 271 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH
Confidence 6678888888888888888765 567888888887775443
No 32
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.83 E-value=1e-18 Score=170.35 Aligned_cols=279 Identities=13% Similarity=0.007 Sum_probs=192.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 045674 288 ITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSY 367 (650)
Q Consensus 288 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 367 (650)
..+..+...+...|++++|..+++++.+... .+...+..++..+...|++++|...++++.+.. +.+...+..++..|
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 3445555666666666666666666665432 245555556666666666666666666665542 22445555556666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HH-HHHHcCCHHH
Q 045674 368 AKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSL-ID-GLGKAGRVDE 445 (650)
Q Consensus 368 ~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~-~~~~~~~~~~ 445 (650)
...|++++|+..++++...... +...+..+...+ ++......+ .. .+...|++++
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~ 156 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEYRE 156 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccHHH
Confidence 6666666666666665544211 111111110000 000011112 22 3667788999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045674 446 AEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMID 525 (650)
Q Consensus 446 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 525 (650)
|...++++.+.. +.+...+..++..|...|++++|...++++.+..+. +..++..++..+...|++++|...++++.+
T Consensus 157 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 234 (327)
T 3cv0_A 157 CRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRALD 234 (327)
T ss_dssp HHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999988875 667888999999999999999999999999887543 678888999999999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 045674 526 KGITPTAASFRALSIGLCLSGKVARACKILDELAPKGII------------PETAFEDMITCLCKTGRIKEACKLADGIV 593 (650)
Q Consensus 526 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 593 (650)
..+. +...+..++.++...|++++|.+.++++.+..+. ...++..++.++...|++++|..++++++
T Consensus 235 ~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 235 INPG-YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred cCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 6543 6788889999999999999999999999887777 67889999999999999999999988665
Q ss_pred H
Q 045674 594 D 594 (650)
Q Consensus 594 ~ 594 (650)
+
T Consensus 314 ~ 314 (327)
T 3cv0_A 314 E 314 (327)
T ss_dssp H
T ss_pred H
Confidence 4
No 33
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.81 E-value=4.5e-18 Score=164.20 Aligned_cols=380 Identities=13% Similarity=0.078 Sum_probs=154.0
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 045674 158 ALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMFIESSE 237 (650)
Q Consensus 158 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~ 237 (650)
-+.|++++|.++++++. +..+|..|+.++.+.|++++|++.|.+. +|..+|..++..+...|++++|+
T Consensus 14 ~~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 35566777777777772 2347777777777777777777777542 35557777777777777777777
Q ss_pred HHHHHHhcCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 045674 238 LVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKG 317 (650)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 317 (650)
..++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..++..|...|++++|...|..+
T Consensus 82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----
T ss_pred HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence 766666653 3456667777777777777777776663 255567777777777888888888777765
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHH
Q 045674 318 IEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGV 397 (650)
Q Consensus 318 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ 397 (650)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+. ..+.....
T Consensus 149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~ 212 (449)
T 1b89_A 149 -----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEE 212 (449)
T ss_dssp -----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHH
T ss_pred -----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHH
Confidence 35777778888888888888877777 166777778888888888888855444322 23333445
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHcCCCC------CHHHHHHHH
Q 045674 398 IISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKA--GRVDEAEELFEEMVEKGCPR------DSYCYNVLI 469 (650)
Q Consensus 398 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~~~~~~~~~------~~~~~~~l~ 469 (650)
++..|.+.|++++|+.+++...... .-....|+.+..+|++- +++.+.++.|..-+ ++++ +...|..+.
T Consensus 213 lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~i--ni~k~~~~~~~~~~w~e~~ 289 (449)
T 1b89_A 213 LINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELV 289 (449)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTS--CHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHHH
Confidence 7777778888888888887777655 33566666666666654 23333333333111 1122 344577777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcC-----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 045674 470 DALAKCGKLDEALALFKRMEDEG-----------CDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRAL 538 (650)
Q Consensus 470 ~~~~~~g~~~~A~~~~~~~~~~~-----------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l 538 (650)
..|...++++.|...+-+-.... -..+...|-..+.-|. +....++.-+-..+...+ |. ...
T Consensus 290 ~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl--~~~p~~l~~ll~~l~~~l--d~---~r~ 362 (449)
T 1b89_A 290 FLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL--EFKPLLLNDLLMVLSPRL--DH---TRA 362 (449)
T ss_dssp HHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH--HHCGGGHHHHHHHHGGGC--CH---HHH
T ss_pred HHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH--hcCHHHHHHHHHHHHhcc--Cc---HHH
Confidence 78888888887765332211100 0123444444444444 111122222222221112 21 223
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 045674 539 SIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLAD 590 (650)
Q Consensus 539 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 590 (650)
+..+.+.|+..-...++..+.+.+ ...+=.++-..|...++++.-++-++
T Consensus 363 v~~~~~~~~l~l~~~yl~~v~~~n--~~~vnealn~l~ieeed~~~lr~si~ 412 (449)
T 1b89_A 363 VNYFSKVKQLPLVKPYLRSVQNHN--NKSVNESLNNLFITEEDYQALRTSID 412 (449)
T ss_dssp HHHHHHTTCTTTTHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHcCCcHHHHHHHHHHHHhh--HHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 344556666666667776666442 44455556667777777776555444
No 34
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.80 E-value=1.2e-19 Score=175.15 Aligned_cols=354 Identities=13% Similarity=0.064 Sum_probs=159.2
Q ss_pred HhcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 045674 228 VNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCL 307 (650)
Q Consensus 228 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 307 (650)
.+.|++++|.+.++++ ++..+|..|+.++.+.|++++|++.|.+. +|..+|..++..+...|++++|.
T Consensus 14 ~~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 14 EHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 3567788888888876 23458889999999999999999888653 46678888888888899999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 045674 308 SLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEG 387 (650)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 387 (650)
..++..++. .+++.+.+.++.+|.+.|++.++.++++ .|+..+|..++..|...|.+++|..+|..+
T Consensus 82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----
T ss_pred HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence 977766664 3356778888889999999888887774 356678888899999999999999998876
Q ss_pred CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 045674 388 VEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNV 467 (650)
Q Consensus 388 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 467 (650)
..|..++.++.+.|++++|.+.+.++ .+..+|..++.+|...|+++.|......+ ..++.-...
T Consensus 149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~ 212 (449)
T 1b89_A 149 -----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEE 212 (449)
T ss_dssp -----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHH
T ss_pred -----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHH
Confidence 36888888899999999999888887 27788888889999999998886554432 234444557
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCC------CHHHHHHHH
Q 045674 468 LIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKE--HRNEEALKLWDMMIDKGITP------TAASFRALS 539 (650)
Q Consensus 468 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~~~~~~~~p------~~~~~~~l~ 539 (650)
++..|.+.|++++|..+++..+... +-....|+.|...|++- ++..+.++.|.. +.+++| +...|..+.
T Consensus 213 lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~~ 289 (449)
T 1b89_A 213 LINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAELV 289 (449)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHH
Confidence 8888888899999999888888765 44677777777776643 333444444332 122222 334567777
Q ss_pred HHHHhcCCHHHHHHHHHHHhhC------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 045674 540 IGLCLSGKVARACKILDELAPK------------GIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTAL 607 (650)
Q Consensus 540 ~~~~~~g~~~~A~~~~~~~~~~------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 607 (650)
..|...++++.|...+-+-... .+.+.++|...+..|. +...+++.-+...+... .|. ...
T Consensus 290 ~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl--~~~p~~l~~ll~~l~~~--ld~---~r~ 362 (449)
T 1b89_A 290 FLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL--EFKPLLLNDLLMVLSPR--LDH---TRA 362 (449)
T ss_dssp HHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH--HHCGGGHHHHHHHHGGG--CCH---HHH
T ss_pred HHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH--hcCHHHHHHHHHHHHhc--cCc---HHH
Confidence 7788888888887644333221 2334555666665555 22233333333333211 121 234
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCC
Q 045674 608 INALRKAGNADLAIKLMHSKIGVGY 632 (650)
Q Consensus 608 ~~~~~~~g~~~~A~~~~~~~~~~~~ 632 (650)
+..+.+.|+..-+..+++.+.+.+.
T Consensus 363 v~~~~~~~~l~l~~~yl~~v~~~n~ 387 (449)
T 1b89_A 363 VNYFSKVKQLPLVKPYLRSVQNHNN 387 (449)
T ss_dssp HHHHHHTTCTTTTHHHHHHHHTTCC
T ss_pred HHHHHHcCCcHHHHHHHHHHHHhhH
Confidence 5556777777777777777776544
No 35
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.80 E-value=9.4e-18 Score=152.18 Aligned_cols=198 Identities=19% Similarity=0.098 Sum_probs=143.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 045674 426 NAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILIN 505 (650)
Q Consensus 426 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 505 (650)
+...+..+...+...|++++|+..|+++++.. |.+...+..++.++.+.|++++|+..+++.++..+. +...+..++.
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHH
Confidence 44556667777777777777777777777764 566777777777777777777777777777776543 6667777777
Q ss_pred HHHhc-----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHH
Q 045674 506 GMFKE-----------HRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMIT 574 (650)
Q Consensus 506 ~~~~~-----------~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 574 (650)
++... |++++|+..++++++..+. +...+..++.++...|++++|+..|+++++.+ .+..++..++.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~ 159 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAE 159 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHH
Confidence 77777 8888888888888876554 67778888888888888888888888888877 78888888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045674 575 CLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKI 628 (650)
Q Consensus 575 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 628 (650)
++...|++++|+..|+++++.. |.+..++..++.++...|++++|+..+++..
T Consensus 160 ~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 8888888888888888888876 6778888888888888888888888887764
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.80 E-value=1.9e-17 Score=155.29 Aligned_cols=225 Identities=13% Similarity=0.096 Sum_probs=163.2
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-------HHHH
Q 045674 393 VTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRD-------SYCY 465 (650)
Q Consensus 393 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-------~~~~ 465 (650)
..+..+...+...|++++|+..|+++.+.. .+...+..++.++...|++++|...++++++.. +.+ ..++
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQG-REMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-cccccchHHHHHHH
Confidence 345556666666666666666666666555 355666666777777777777777777666642 111 4667
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 045674 466 NVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLS 545 (650)
Q Consensus 466 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 545 (650)
..++.+|...|++++|...|+++.+.. |+. ..+...|++++|...++++....+. +...+..++..+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHh
Confidence 777777777777777777777777653 332 3355667778888888887775333 455677788888888
Q ss_pred CCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 045674 546 GKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMH 625 (650)
Q Consensus 546 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 625 (650)
|++++|...++++.+..+.+..++..++.++...|++++|++.++++++.. +.+..++..++.++...|++++|+..++
T Consensus 153 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 888888888888888777778888888888888888888888888888775 6667788888888888888888888888
Q ss_pred HHHHCC
Q 045674 626 SKIGVG 631 (650)
Q Consensus 626 ~~~~~~ 631 (650)
++++..
T Consensus 232 ~a~~~~ 237 (258)
T 3uq3_A 232 AARTKD 237 (258)
T ss_dssp HHHHHH
T ss_pred HHHHhC
Confidence 888876
No 37
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.78 E-value=2.9e-17 Score=161.03 Aligned_cols=234 Identities=11% Similarity=0.064 Sum_probs=133.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 045674 394 TYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGR-VDEAEELFEEMVEKGCPRDSYCYNVLIDAL 472 (650)
Q Consensus 394 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 472 (650)
.|..+...+...|++++|+..++++++..+. +...|..+..++...|+ +++|+..|+++++.. +.+...|+.++.++
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 3444455555555566666666555555444 55555555555666664 666666666666553 44555666666666
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHH
Q 045674 473 AKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCL-SGKVARA 551 (650)
Q Consensus 473 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A 551 (650)
...|++++|+..|+++++..+. +...|..++.++...|++++|+..++++++..+. +...|..++.++.. .|..++|
T Consensus 177 ~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcchHH
Confidence 6666666666666666655443 5555666666666666666666666666655443 55555566665555 3443444
Q ss_pred -----HHHHHHHhhCCCCcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--------C
Q 045674 552 -----CKILDELAPKGIIPETAFEDMITCLCKTG--RIKEACKLADGIVDREREIPGKIRTALINALRKAG--------N 616 (650)
Q Consensus 552 -----~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------~ 616 (650)
+..+++++...|.+..+|..++.++...| ++++|++.++++ +.+ +.+..++..++.+|.+.| +
T Consensus 255 ~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~~~~~~ 332 (382)
T 2h6f_A 255 VLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQCDNKED 332 (382)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhcccccchHH
Confidence 35666666666666666666666666655 456666666655 332 445555566666665543 2
Q ss_pred -HHHHHHHHHHH-HHCCCC
Q 045674 617 -ADLAIKLMHSK-IGVGYD 633 (650)
Q Consensus 617 -~~~A~~~~~~~-~~~~~~ 633 (650)
+++|+++++++ ++..+.
T Consensus 333 ~~~~A~~~~~~l~~~~DP~ 351 (382)
T 2h6f_A 333 ILNKALELCEILAKEKDTI 351 (382)
T ss_dssp HHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHHhCch
Confidence 35666666666 555444
No 38
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.77 E-value=3.4e-17 Score=166.10 Aligned_cols=372 Identities=11% Similarity=0.041 Sum_probs=183.8
Q ss_pred HHHhcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCh---hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-
Q 045674 226 GLVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKT---QKAMEKFRAMEARNVQPDKITYMTLIQACYLEG- 301 (650)
Q Consensus 226 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~- 301 (650)
.+.+.|++++|..+|++..+.+ +..++..|...|...|+. ++|++.|++..+. +...+..|...+...+
T Consensus 12 ~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~ 84 (452)
T 3e4b_A 12 EALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPG 84 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHTC--
T ss_pred HHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCC
Confidence 3344444555555554444332 222333344444444444 4555555554432 2333333444333332
Q ss_pred ----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh---HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHH
Q 045674 302 ----DFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKC---IEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMN 374 (650)
Q Consensus 302 ----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 374 (650)
++++|...|++..+.|.. ..+..|...|...+.. .++.+.+......| +...+..|...|...+.++
T Consensus 85 ~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~ 158 (452)
T 3e4b_A 85 ATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYD 158 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGG
T ss_pred CCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcc
Confidence 445555555555554322 2344444444443332 22333333333333 2233444555665555333
Q ss_pred ----HHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc----CCH
Q 045674 375 ----EAINIFERMKYEGVEPDEVTYGVIISGLCKNE---RLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKA----GRV 443 (650)
Q Consensus 375 ----~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~ 443 (650)
.+..+++..... +...+..+...|...| +.++|++.|++..+.+.. +...+..+..+|... +++
T Consensus 159 ~~~~~a~~~~~~a~~~----~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~ 233 (452)
T 3e4b_A 159 QHLDDVERICKAALNT----TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDE 233 (452)
T ss_dssp GGHHHHHHHHHHHTTT----CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCH
T ss_pred cCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCH
Confidence 333333333322 2225556666666666 666777777766666544 444444555555444 567
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-----CHHH
Q 045674 444 DEAEELFEEMVEKGCPRDSYCYNVLIDA-L--AKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEH-----RNEE 515 (650)
Q Consensus 444 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~ 515 (650)
++|+..|+... . .+...+..+..+ | ...+++++|+..|++..+.| +...+..|...|. .| ++++
T Consensus 234 ~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~ 305 (452)
T 3e4b_A 234 KTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKA 305 (452)
T ss_dssp HHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHH
T ss_pred HHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHH
Confidence 77777777765 3 355556666665 3 34667777777777777654 5556666666665 34 7777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHH----cCCHHHHHH
Q 045674 516 ALKLWDMMIDKGITPTAASFRALSIGLCL----SGKVARACKILDELAPKGIIPETAFEDMITCLCK----TGRIKEACK 587 (650)
Q Consensus 516 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~ 587 (650)
|...|++.. . -+......++..|.. ..++++|..+|+++.+.| +......|+.+|.. ..+.++|..
T Consensus 306 A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~G~g~~~d~~~A~~ 379 (452)
T 3e4b_A 306 AEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG--QNSADFAIAQLFSQGKGTKPDPLNAYV 379 (452)
T ss_dssp HHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT--CTTHHHHHHHHHHSCTTBCCCHHHHHH
T ss_pred HHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC--hHHHHHHHHHHHHhCCCCCCCHHHHHH
Confidence 777777766 2 255666666666654 237777777777777654 44556666666653 346777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045674 588 LADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGV 630 (650)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 630 (650)
+|+++.+.| .++.......+......++..+|..+.++..+.
T Consensus 380 ~~~~A~~~g-~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 380 FSQLAKAQD-TPEANDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp HHHHHHTTC-CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCC-CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 777777665 222222222222222234556666666665543
No 39
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.77 E-value=4.7e-17 Score=147.55 Aligned_cols=199 Identities=18% Similarity=0.029 Sum_probs=156.5
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 045674 390 PDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLI 469 (650)
Q Consensus 390 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 469 (650)
++...+..+...+.+.|++++|+..|+++.+..+. +...+..+..++.+.|++++|+..++++++.. |.+...+..++
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 34556777777788888888888888888877665 77778888888888888888888888888875 66778888888
Q ss_pred HHHHHc-----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 045674 470 DALAKC-----------GKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRAL 538 (650)
Q Consensus 470 ~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l 538 (650)
.++.+. |++++|+..+++.++..+. +...+..++.++...|++++|+..|+++++.. .+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 888888 9999999999999887654 77888889999999999999999999999876 588889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 045674 539 SIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIV 593 (650)
Q Consensus 539 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 593 (650)
+.++...|++++|+..|+++++..|.+..++..++.++...|++++|++.+++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999999988899999999999999999999999988764
No 40
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.77 E-value=9.9e-17 Score=151.69 Aligned_cols=244 Identities=11% Similarity=-0.002 Sum_probs=132.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHH
Q 045674 396 GVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGC--PRDSYCYNVLIDALA 473 (650)
Q Consensus 396 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~ 473 (650)
......+...|++++|+..|+.+.+..+. +...+..++.++...|++++|+..++++++... ......|..++.+|.
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 33444455555555555555555554433 333444555555555555555555555555210 011223555566666
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 045674 474 KCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACK 553 (650)
Q Consensus 474 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 553 (650)
..|++++|++.|+++.+..+. +...+..++..+...|++++|+..++++++..+. +...+..++..+...+++++|.+
T Consensus 86 ~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666554333 4455556666666666666666666666554322 44555555533333446666666
Q ss_pred HHHHHhhCCCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCC-CCC------HHHHHHHHHHHHhcCCHHHHHHH
Q 045674 554 ILDELAPKGIIPETAFEDMITCLCKTGR---IKEACKLADGIVDRER-EIP------GKIRTALINALRKAGNADLAIKL 623 (650)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~-~~~------~~~~~~l~~~~~~~g~~~~A~~~ 623 (650)
.++++++..+.+...+..++.++...|+ +++|...++++++... .++ ..++..++..|...|++++|++.
T Consensus 164 ~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 243 (272)
T 3u4t_A 164 SFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAA 243 (272)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 6666666655556666666666666665 5556666666654310 011 13555566666666666666666
Q ss_pred HHHHHHCCCCChhhhhhhh
Q 045674 624 MHSKIGVGYDRMGSIKRRV 642 (650)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~ 642 (650)
++++++..+........+.
T Consensus 244 ~~~al~~~p~~~~a~~~l~ 262 (272)
T 3u4t_A 244 WKNILALDPTNKKAIDGLK 262 (272)
T ss_dssp HHHHHHHCTTCHHHHHHHC
T ss_pred HHHHHhcCccHHHHHHHhh
Confidence 6666666665544444433
No 41
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.77 E-value=2.6e-14 Score=149.47 Aligned_cols=474 Identities=10% Similarity=0.022 Sum_probs=282.4
Q ss_pred hhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC---HHHHHH
Q 045674 127 PNVGLRLFTWAARQKKYSHNLECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGM---VEELLW 203 (650)
Q Consensus 127 ~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~ 203 (650)
+..-...|+..... .+.+...|..++..+.+.+.++.++.+|++++.. +|.....|...+..-.+.|. ++.+.+
T Consensus 48 ~~d~i~~lE~~l~~--np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 48 ESDVIGKLNDMIEE--QPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp CSCHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred CHHHHHHHHHHHHH--CcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 44445555544443 3457888888888888888888888888888776 46777788888877777777 888888
Q ss_pred HHHHHHHCC-CCCCHHHHHHHHHHHHhcCCh--------hHHHHHHHHHhc-CCC-CC-ChhhHHHHHHHHHH-------
Q 045674 204 VWRSMKENG-IEPSLYTYNFLMNGLVNSMFI--------ESSELVFKVMEN-GKV-GP-DVVTYNTMIKGYCK------- 264 (650)
Q Consensus 204 ~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~--------~~A~~~~~~~~~-~~~-~~-~~~~~~~l~~~~~~------- 264 (650)
+|++..... ..|++..|...+....+.++. +...++|+..+. .|. .+ +...|...+.....
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ 204 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF 204 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcH
Confidence 888887753 136777777776655554443 223456665543 233 23 23556655554332
Q ss_pred --cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 045674 265 --VGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGH 342 (650)
Q Consensus 265 --~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 342 (650)
.++.+.+..+|++.+......-..+|..... +.+.-+...+.+++.+ ...+++.|.
T Consensus 205 eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~-fe~~~~~~~a~~~~~e---------------------~~~~y~~Ar 262 (679)
T 4e6h_A 205 EEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQ-WEQDVNQLTARRHIGE---------------------LSAQYMNAR 262 (679)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHH-HHHHHCTTTHHHHHHH---------------------HHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHH-HHHhcCcchHHHHHHH---------------------hhHHHHHHH
Confidence 2334555556655553211000111111100 0000000000000000 011222233
Q ss_pred HHHHHHHHc--CCC---cCH-HHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC-------CH
Q 045674 343 AIFESMIRR--GCQ---PNV-AIYTALIDSYAKLG-SMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNE-------RL 408 (650)
Q Consensus 343 ~~~~~~~~~--~~~---~~~-~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-------~~ 408 (650)
..+.++... ++. |.. .... ....-..+ .....+ ..|...+..--..+ ..
T Consensus 263 ~~~~e~~~~~~~l~r~~p~~~~~~~--~~~~p~~~~~~~~ql---------------~lW~~yi~fEk~~~~~l~~~~~~ 325 (679)
T 4e6h_A 263 SLYQDWLNITKGLKRNLPITLNQAT--ESNLPKPNEYDVQQL---------------LIWLEWIRWESDNKLELSDDLHK 325 (679)
T ss_dssp HHHHHHHHHTTTCCCCCCSSSTTCC--TTTSCCTTCCCHHHH---------------HHHHHHHHHHHTCTTCCCHHHHH
T ss_pred HHHHHHHHHHHhHhhccccccccch--hccCCCCchhHHHHH---------------HHHHHHHHHHHhCCccccchhhH
Confidence 333222110 000 000 0000 00000000 000001 12333332211111 12
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 045674 409 EEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAE-ELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKR 487 (650)
Q Consensus 409 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 487 (650)
+.+..+|++++...+. ....|...+..+...|+.++|. .+|++++.. +|.+...|..++....+.|+++.|.++|++
T Consensus 326 ~Rv~~~Ye~aL~~~p~-~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek 403 (679)
T 4e6h_A 326 ARMTYVYMQAAQHVCF-APEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILS 403 (679)
T ss_dssp HHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3455677777766444 7788888888888888888886 999998876 467777788888888889999999999998
Q ss_pred HHHcCC---------CC------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 045674 488 MEDEGC---------DQ------------TVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSG 546 (650)
Q Consensus 488 ~~~~~~---------~~------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 546 (650)
+++... .| ....|...+....+.|..+.|..+|.++.+.-.......|...+..-.+.|
T Consensus 404 ~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~ 483 (679)
T 4e6h_A 404 CIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHIS 483 (679)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhC
Confidence 876310 12 133577777777788999999999999987612223445555554445554
Q ss_pred -CHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHH
Q 045674 547 -KVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDRERE--IPGKIRTALINALRKAGNADLAIKL 623 (650)
Q Consensus 547 -~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~ 623 (650)
+.+.|.++|+.+++..+.+...+..++......|+.+.|..+|+++++...+ .....|..++..-.+.|+.+.+.++
T Consensus 484 ~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v 563 (679)
T 4e6h_A 484 KDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTL 563 (679)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 5899999999999987778888889999999999999999999999987521 1356788888888899999999999
Q ss_pred HHHHHHCCCCChhhhhhhhcc
Q 045674 624 MHSKIGVGYDRMGSIKRRVKF 644 (650)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~~ 644 (650)
.+++.+.-|..+..-.-.-||
T Consensus 564 ~~R~~~~~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 564 EKRFFEKFPEVNKLEEFTNKY 584 (679)
T ss_dssp HHHHHHHSTTCCHHHHHHHHT
T ss_pred HHHHHHhCCCCcHHHHHHHHh
Confidence 999999888754433333344
No 42
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.77 E-value=7.8e-17 Score=151.00 Aligned_cols=226 Identities=13% Similarity=0.093 Sum_probs=173.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--C----HHHHH
Q 045674 358 AIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAV--N----AMFYS 431 (650)
Q Consensus 358 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~----~~~~~ 431 (650)
..+..++..+...|++++|+.+|+++.+.. .+...+..+..++...|++++|+..++.+.+..+.. + ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 455666677777777777777777776654 456667777777777777777777777666543221 1 46777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 045674 432 SLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEH 511 (650)
Q Consensus 432 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 511 (650)
.++.++...|++++|...++++.... ++. ..+.+.|++++|...++++....+. +...+..++..+...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHhc
Confidence 78888888888888888888888753 442 3456667788888888888876433 5667778888888889
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 045674 512 RNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADG 591 (650)
Q Consensus 512 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 591 (650)
++++|...++++++..+. +...+..++.++...|++++|...++++++..+.+..++..++.++...|++++|.+.+++
T Consensus 154 ~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999999999988876544 6778888889999999999999999999988888888899999999999999999999998
Q ss_pred HHHcC
Q 045674 592 IVDRE 596 (650)
Q Consensus 592 ~~~~~ 596 (650)
+++..
T Consensus 233 a~~~~ 237 (258)
T 3uq3_A 233 ARTKD 237 (258)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 88763
No 43
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.77 E-value=4.5e-17 Score=165.18 Aligned_cols=350 Identities=11% Similarity=0.001 Sum_probs=249.0
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 045674 257 TMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDF---DSCLSLYHEMDEKGIEIPSHAYNLVIGGLC 333 (650)
Q Consensus 257 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 333 (650)
.+...+.+.|++++|+++|++..+.| +...+..|...|...|+. ++|...|++..+. +...+..+...+.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 36677888999999999999998765 344556677777778888 8999999998855 5556777777555
Q ss_pred hcC-----ChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc
Q 045674 334 KVG-----KCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSM---NEAINIFERMKYEGVEPDEVTYGVIISGLCKN 405 (650)
Q Consensus 334 ~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 405 (650)
..+ +.++|...|++..+.|... .+..|...|...+.. .++.+.+.+....| +...+..+...|...
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~ 154 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQ 154 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHH
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC
Confidence 555 7789999999999976432 566688888776543 34555666555543 344666777778888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc----CCH
Q 045674 406 ERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAG---RVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKC----GKL 478 (650)
Q Consensus 406 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~ 478 (650)
+.++++......+.+.-...+...+..+..+|...| +.++|++.|+...+.| +++...+..+..+|... +++
T Consensus 155 ~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~ 233 (452)
T 3e4b_A 155 GTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDE 233 (452)
T ss_dssp TCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCH
T ss_pred CCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCH
Confidence 865555544333222211113337788999999999 9999999999999997 67777778888888765 799
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----CHHH
Q 045674 479 DEALALFKRMEDEGCDQTVYTYTILING-M--FKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSG-----KVAR 550 (650)
Q Consensus 479 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-----~~~~ 550 (650)
++|+..|++.. . -+...+..|... + ...+++++|+..|++..+.| +...+..++..|. .| ++++
T Consensus 234 ~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~ 305 (452)
T 3e4b_A 234 KTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKA 305 (452)
T ss_dssp HHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHH
T ss_pred HHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHH
Confidence 99999999988 3 366677777776 4 46899999999999999876 6778888888887 55 9999
Q ss_pred HHHHHHHHhhCCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHH
Q 045674 551 ACKILDELAPKGIIPETAFEDMITCLCK----TGRIKEACKLADGIVDREREIPGKIRTALINALRK----AGNADLAIK 622 (650)
Q Consensus 551 A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~ 622 (650)
|.++|+++. +.+......|+.+|.. ..++++|.++|+++.+.+ +......++..|.. ..+.++|..
T Consensus 306 A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~ 379 (452)
T 3e4b_A 306 AEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYV 379 (452)
T ss_dssp HHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHH
T ss_pred HHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHH
Confidence 999999999 5588899999988877 349999999999999865 45567778888774 459999999
Q ss_pred HHHHHHHCCCCC
Q 045674 623 LMHSKIGVGYDR 634 (650)
Q Consensus 623 ~~~~~~~~~~~~ 634 (650)
+++++.+.|...
T Consensus 380 ~~~~A~~~g~~~ 391 (452)
T 3e4b_A 380 FSQLAKAQDTPE 391 (452)
T ss_dssp HHHHHHTTCCHH
T ss_pred HHHHHHHCCCHH
Confidence 999999998753
No 44
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.77 E-value=1e-16 Score=157.21 Aligned_cols=250 Identities=10% Similarity=0.038 Sum_probs=205.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 045674 357 VAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNER-LEEAMQYFEFCRANGVAVNAMFYSSLID 435 (650)
Q Consensus 357 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 435 (650)
...|..+...+...|++++|+..|++++..... +...|..+..++...|+ +++|+..|+++++.++. +...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 456777788888888899999999888875322 46778888888888886 99999999988888776 7888888999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCHH
Q 045674 436 GLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFK-EHRNE 514 (650)
Q Consensus 436 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~ 514 (650)
++...|++++|+..|+++++.. +.+...|..++.++.+.|++++|+..++++++..+. +...|+.++.++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcch
Confidence 9999999999999999999886 778889999999999999999999999999988665 78888888888888 56557
Q ss_pred HH-----HHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcC-------
Q 045674 515 EA-----LKLWDMMIDKGITPTAASFRALSIGLCLSG--KVARACKILDELAPKGIIPETAFEDMITCLCKTG------- 580 (650)
Q Consensus 515 ~A-----~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------- 580 (650)
+| +..++++++..+. +...|..++.++...| ++++|.+.++++ +..+.+..++..++.+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 77 5888888886555 6778888888888888 689999999888 777778899999999998874
Q ss_pred -C-HHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHh
Q 045674 581 -R-IKEACKLADGI-VDREREIPGKIRTALINALRK 613 (650)
Q Consensus 581 -~-~~~A~~~~~~~-~~~~~~~~~~~~~~l~~~~~~ 613 (650)
+ +++|+++|+++ .+.+ +.....|..++..+..
T Consensus 331 ~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKD-TIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHH
Confidence 2 58999999998 7765 5567778777776654
No 45
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.76 E-value=9.6e-17 Score=148.90 Aligned_cols=215 Identities=16% Similarity=0.168 Sum_probs=140.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 045674 426 NAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILIN 505 (650)
Q Consensus 426 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 505 (650)
....+..++..+...|++++|...|+++.+.. +.+...+..++.+|...|++++|+..++++.+..+. +...+..++.
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHHH
Confidence 34455566666777777777777777777653 556677777777777777777777777777765433 5666777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHH
Q 045674 506 GMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEA 585 (650)
Q Consensus 506 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 585 (650)
.+...|++++|..+++++.+.... +...+..++..+...|++++|..+++++.+..+.+..++..++.++...|++++|
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 777777777777777777765433 5666777777777777777777777777777677777777777778888888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCChhhhhhhhcc
Q 045674 586 CKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYDRMGSIKRRVKF 644 (650)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 644 (650)
++.++++++.. +.+..++..++.+|...|++++|+..++++++..+........+...
T Consensus 179 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 236 (243)
T 2q7f_A 179 LSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLL 236 (243)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHH
Confidence 88887777765 55677777777777888888888888888877777766555554443
No 46
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.75 E-value=6.8e-16 Score=144.03 Aligned_cols=208 Identities=13% Similarity=0.021 Sum_probs=160.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 045674 427 AMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILING 506 (650)
Q Consensus 427 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 506 (650)
...+..++..+...|++++|...++++.+.. +.+...+..++.+|...|++++|.+.++++.+..+. +...+..++..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHH
Confidence 4556667777777888888888888777764 556777778888888888888888888887776443 66777777888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHH
Q 045674 507 MFKEHRNEEALKLWDMMIDKGITP-TAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEA 585 (650)
Q Consensus 507 ~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 585 (650)
+...|++++|.++++++.+.+..| +...+..++.++...|++++|..+++++.+..+.+...+..++.++...|++++|
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 888888888888888887632233 4556777788888888888888888888887777788888888888888888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCChhh
Q 045674 586 CKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYDRMGS 637 (650)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 637 (650)
..+++++++.. +.+...+..++..+...|++++|.+.++++++..+.....
T Consensus 195 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 245 (252)
T 2ho1_A 195 RQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEY 245 (252)
T ss_dssp HHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHH
T ss_pred HHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHH
Confidence 88888888765 5677777888888888888888888888888877664443
No 47
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.75 E-value=5.1e-16 Score=146.77 Aligned_cols=251 Identities=11% Similarity=0.010 Sum_probs=186.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHH
Q 045674 359 IYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGV--AVNAMFYSSLIDG 436 (650)
Q Consensus 359 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~ 436 (650)
.+...+..+...|++++|+.+|+++.+.... +...+..+...+...|++++|+..++++.+... ......|..++..
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 3445667777888888888888887765321 344677777788888888888888888777332 2224457788888
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 045674 437 LGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEA 516 (650)
Q Consensus 437 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 516 (650)
+...|++++|+..++++.+.. +.+..++..++.+|...|++++|+..+++..+..+. +...+..++..+...+++++|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888874 567788888888899999999999999888876433 677777777344455699999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHhhCC---CCc-----HHHHHHHHHHHHHcCCHHHH
Q 045674 517 LKLWDMMIDKGITPTAASFRALSIGLCLSGK---VARACKILDELAPKG---IIP-----ETAFEDMITCLCKTGRIKEA 585 (650)
Q Consensus 517 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~---~~~-----~~~~~~l~~~~~~~g~~~~A 585 (650)
...++++++..+. +...+..++.++...|+ +++|...++++.+.. +.+ ..++..++.++...|++++|
T Consensus 162 ~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 162 DSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 9999998876444 56777788888888887 888888888887653 221 25778899999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 045674 586 CKLADGIVDREREIPGKIRTALINALRKA 614 (650)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 614 (650)
.+.++++++.+ |.+..++..+.......
T Consensus 241 ~~~~~~al~~~-p~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 241 DAAWKNILALD-PTNKKAIDGLKMKLEHH 268 (272)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHC------
T ss_pred HHHHHHHHhcC-ccHHHHHHHhhhhhccc
Confidence 99999999886 67777777766554433
No 48
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.74 E-value=7e-15 Score=138.92 Aligned_cols=226 Identities=13% Similarity=0.022 Sum_probs=166.5
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 045674 391 DEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGK----AGRVDEAEELFEEMVEKGCPRDSYCYN 466 (650)
Q Consensus 391 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~ 466 (650)
+..++..+...+...|++++|+..|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 34455566666666677777777777666632 44556667777777 777777777777777764 666777
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 045674 467 VLIDALAK----CGKLDEALALFKRMEDEGCDQTVYTYTILINGMFK----EHRNEEALKLWDMMIDKGITPTAASFRAL 538 (650)
Q Consensus 467 ~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~p~~~~~~~l 538 (650)
.++.+|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|+..|+++.+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 77777777 777888887777777763 66677777777777 788888888888877754 55667777
Q ss_pred HHHHHh----cCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 045674 539 SIGLCL----SGKVARACKILDELAPKGIIPETAFEDMITCLCK----TGRIKEACKLADGIVDREREIPGKIRTALINA 610 (650)
Q Consensus 539 ~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 610 (650)
+..+.. .+++++|..+++++.+.+ +...+..++.++.. .+++++|++.++++++.+ +...+..++.+
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~ 227 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK--DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAM 227 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHH
Confidence 777777 788888888888887763 56777788888888 888888888888888764 36677778888
Q ss_pred HHh----cCCHHHHHHHHHHHHHCCCC
Q 045674 611 LRK----AGNADLAIKLMHSKIGVGYD 633 (650)
Q Consensus 611 ~~~----~g~~~~A~~~~~~~~~~~~~ 633 (650)
|.. .+++++|++.++++++.|+.
T Consensus 228 ~~~g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 228 QYNGEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp HHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred HHcCCCcccCHHHHHHHHHHHHHcCCH
Confidence 887 88888888888888887654
No 49
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.73 E-value=2.4e-15 Score=137.54 Aligned_cols=208 Identities=13% Similarity=0.034 Sum_probs=167.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 045674 426 NAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILIN 505 (650)
Q Consensus 426 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 505 (650)
+...+..++..+...|++++|.+.++++.+.. +.+...+..++.+|...|++++|...++++.+..+. +..++..++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHH
Confidence 45567777888888888888888888888764 566778888888888888888888888888876443 6777888888
Q ss_pred HHHhc-CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHH
Q 045674 506 GMFKE-HRNEEALKLWDMMIDKGITP-TAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIK 583 (650)
Q Consensus 506 ~~~~~-~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 583 (650)
.+... |++++|...++++.+.+..| +...+..++.++...|++++|..+++++.+..+.+...+..++.++...|+++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 88888 88888888888888732233 35677788888888899999999999888887778888888999999999999
Q ss_pred HHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCChh
Q 045674 584 EACKLADGIVDRERE-IPGKIRTALINALRKAGNADLAIKLMHSKIGVGYDRMG 636 (650)
Q Consensus 584 ~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 636 (650)
+|.++++++++.. + .+...+..++..+...|+.++|..+++.+.+..+....
T Consensus 165 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 217 (225)
T 2vq2_A 165 DADYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEE 217 (225)
T ss_dssp HHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHH
Confidence 9999999888876 5 67777777888888889999999988888877666443
No 50
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.73 E-value=3.6e-16 Score=145.01 Aligned_cols=216 Identities=13% Similarity=0.080 Sum_probs=157.8
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 045674 392 EVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDA 471 (650)
Q Consensus 392 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 471 (650)
...+..+...+...|++++|...|+++.+..+. +...+..++..+...|++++|...++++.+.. +.+...+..++..
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE-DAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp -------------------CCTTHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 445666666777778888888888877776544 67777778888888888888888888888764 5677888888888
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 045674 472 LAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARA 551 (650)
Q Consensus 472 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 551 (650)
|...|++++|.+.++++.+.... +...+..++..+...|++++|...++++.+..+. +...+..++..+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-DTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHcCCHHHH
Confidence 88888888888888888876543 6777888888888888999999888888876443 677888888888999999999
Q ss_pred HHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 045674 552 CKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALR 612 (650)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 612 (650)
.++++++.+..+.+..++..++.++...|++++|.+.++++++.. +.+..++..+.....
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~l~~ 238 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ-PDHMLALHAKKLLGH 238 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC-TTCHHHHHHHTC---
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC-cchHHHHHHHHHHHh
Confidence 999999988878888888999999999999999999999998876 666666666554433
No 51
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.72 E-value=1.8e-14 Score=136.13 Aligned_cols=224 Identities=11% Similarity=-0.045 Sum_probs=178.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 045674 356 NVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCK----NERLEEAMQYFEFCRANGVAVNAMFYS 431 (650)
Q Consensus 356 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~ 431 (650)
+...+..+...|...|++++|+.+|++..+. -+...+..+...|.. .+++++|+..|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4556667777777888888888888877763 245566777777777 888888888888877765 667777
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 045674 432 SLIDGLGK----AGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAK----CGKLDEALALFKRMEDEGCDQTVYTYTIL 503 (650)
Q Consensus 432 ~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 503 (650)
.+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 78888888 888888888888888764 67788888888888 888888888888888864 56677778
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Q 045674 504 INGMFK----EHRNEEALKLWDMMIDKGITPTAASFRALSIGLCL----SGKVARACKILDELAPKGIIPETAFEDMITC 575 (650)
Q Consensus 504 ~~~~~~----~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 575 (650)
...|.. .+++++|+..++++.+.+ +...+..++..|.. .+++++|..+++++.+.++ ...+..++.+
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~ 227 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAM 227 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHH
Confidence 887877 888899999888888763 56777788888888 8899999999998888754 7778888888
Q ss_pred HHH----cCCHHHHHHHHHHHHHcC
Q 045674 576 LCK----TGRIKEACKLADGIVDRE 596 (650)
Q Consensus 576 ~~~----~g~~~~A~~~~~~~~~~~ 596 (650)
+.. .+++++|.+.++++.+.+
T Consensus 228 ~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 228 QYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHcCCCcccCHHHHHHHHHHHHHcC
Confidence 888 889999999999998876
No 52
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.72 E-value=4.9e-15 Score=138.19 Aligned_cols=209 Identities=11% Similarity=-0.035 Sum_probs=173.7
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 045674 392 EVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDA 471 (650)
Q Consensus 392 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 471 (650)
...+..+...+...|++++|...|+++.+..+. +...+..++.++...|++++|.+.++++.+.. +.+...+..++.+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS-SADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 345667777788888888888888888776544 67788888888999999999999999988875 5678888889999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 045674 472 LAKCGKLDEALALFKRMEDEGCDQ-TVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVAR 550 (650)
Q Consensus 472 ~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 550 (650)
|...|++++|.+.++++.+.+..| +...+..++.++...|++++|...++++.+..+. +...+..++..+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999988732233 5667888888899999999999999999876543 67888899999999999999
Q ss_pred HHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 045674 551 ACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIR 604 (650)
Q Consensus 551 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 604 (650)
|..+++++.+..+.+...+..++.++...|++++|.++++++.+.. +.+....
T Consensus 194 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~ 246 (252)
T 2ho1_A 194 ARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY-PGSLEYQ 246 (252)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSHHHH
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCCHHHH
Confidence 9999999999888888899999999999999999999999999875 4455443
No 53
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.71 E-value=2.1e-15 Score=133.02 Aligned_cols=171 Identities=13% Similarity=0.082 Sum_probs=143.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 045674 460 RDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALS 539 (650)
Q Consensus 460 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 539 (650)
.+..+|..++..|.+.|++++|++.|++.++..+. +..++..++.+|...|++++|...+.++....+. +...+..++
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~ 80 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILG 80 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHH
Confidence 46678888888888888888888888888887654 7778888888888888888888888888876544 667777788
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 045674 540 IGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADL 619 (650)
Q Consensus 540 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 619 (650)
..+...++++.|...++++.+..+.+..++..++.++...|++++|++.|+++++.+ |.+..+|..++.+|.+.|++++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 888888899999999988888888888888889999999999999999999988886 6778888888999999999999
Q ss_pred HHHHHHHHHHCCCC
Q 045674 620 AIKLMHSKIGVGYD 633 (650)
Q Consensus 620 A~~~~~~~~~~~~~ 633 (650)
|++.++++++..+.
T Consensus 160 A~~~~~~al~~~p~ 173 (184)
T 3vtx_A 160 AVKYFKKALEKEEK 173 (184)
T ss_dssp HHHHHHHHHHTTHH
T ss_pred HHHHHHHHHhCCcc
Confidence 99999999887543
No 54
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.71 E-value=1e-15 Score=144.99 Aligned_cols=246 Identities=12% Similarity=-0.096 Sum_probs=179.7
Q ss_pred hcCCHHHHHHHHHHHHHCCCC---CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 045674 369 KLGSMNEAINIFERMKYEGVE---PDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDE 445 (650)
Q Consensus 369 ~~~~~~~A~~~~~~~~~~~~~---p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 445 (650)
..|++++|+..|+++.+.... .+...+..+...+...|++++|...|+++.+..+. +...+..++.++...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHH
Confidence 456778888888877764221 13456777777788888888888888888776554 67788888888888888888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045674 446 AEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMID 525 (650)
Q Consensus 446 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 525 (650)
|...++++++.. +.+...+..++.+|.+.|++++|...++++.+..+ +.......+..+...|++++|...++++..
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP--NDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 888888888874 56778888888888888999999998888887643 333333344455667889999999988776
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 045674 526 KGITPTAASFRALSIGLCLSGKVARACKILDELAPKGII----PETAFEDMITCLCKTGRIKEACKLADGIVDREREIPG 601 (650)
Q Consensus 526 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 601 (650)
.... +...+ .++..+...++.++|...++++.+..+. +..++..++.++...|++++|...++++++.+ +.+.
T Consensus 173 ~~~~-~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~ 249 (275)
T 1xnf_A 173 KSDK-EQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN-VHNF 249 (275)
T ss_dssp HSCC-CSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-CTTC
T ss_pred cCCc-chHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-chhH
Confidence 5332 33333 3666677788888899999888876543 25788889999999999999999999999765 3333
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHH
Q 045674 602 KIRTALINALRKAGNADLAIKLM 624 (650)
Q Consensus 602 ~~~~~l~~~~~~~g~~~~A~~~~ 624 (650)
. ....++...|++++|++.+
T Consensus 250 ~---~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 250 V---EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp H---HHHHHHHHHHHHHHC----
T ss_pred H---HHHHHHHHHHHHHhhHHHH
Confidence 3 3356778889999988776
No 55
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.70 E-value=1.5e-14 Score=132.15 Aligned_cols=210 Identities=11% Similarity=0.007 Sum_probs=161.5
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 045674 392 EVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDA 471 (650)
Q Consensus 392 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 471 (650)
...+..+...+...|++++|...++.+.+..+. +...+..++..+...|++++|.+.++++.+.. +.+..++..++.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPK-NELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 445666677777777777777777777765543 56677778888888888888888888887764 5677788888888
Q ss_pred HHHc-CCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 045674 472 LAKC-GKLDEALALFKRMEDEGCDQ-TVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVA 549 (650)
Q Consensus 472 ~~~~-g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 549 (650)
|... |++++|...++++.+.+..| +...+..++.++...|++++|...++++.+..+. +...+..++.++...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCHH
Confidence 8888 88888888888887732222 3567777888888888888888888888876443 5777888888888889999
Q ss_pred HHHHHHHHHhhCCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 045674 550 RACKILDELAPKGI-IPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRT 605 (650)
Q Consensus 550 ~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 605 (650)
+|..+++++.+..+ .+...+..++..+...|+.++|..+++.+.+.. +.+.....
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~ 220 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF-PYSEELQT 220 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 99999998888878 777888888888888899999988888887764 44554443
No 56
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.68 E-value=7.8e-16 Score=155.23 Aligned_cols=204 Identities=14% Similarity=0.060 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc----C-CCCCHHHHHHHHHHHHHcCC-----------------HHHHHHHHH
Q 045674 429 FYSSLIDGLGKAGRVDEAEELFEEMVEK----G-CPRDSYCYNVLIDALAKCGK-----------------LDEALALFK 486 (650)
Q Consensus 429 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~-----------------~~~A~~~~~ 486 (650)
.+..+...|...|++++|...++++.+. + .+....++..++.+|...|+ +++|++.++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 3444555555555555555555554432 0 01123345555666666666 666666665
Q ss_pred HHHHc----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHH
Q 045674 487 RMEDE----GC-DQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGIT-PT----AASFRALSIGLCLSGKVARACKILD 556 (650)
Q Consensus 487 ~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~g~~~~A~~~~~ 556 (650)
+..+. +. .....++..++..+...|++++|...++++.+.... .+ ...+..++.++...|++++|..+++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 54331 10 112335666666777777777777777776642111 11 2256677777778888888888887
Q ss_pred HHhhCCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 045674 557 ELAPKGII------PETAFEDMITCLCKTGRIKEACKLADGIVDRER-----EIPGKIRTALINALRKAGNADLAIKLMH 625 (650)
Q Consensus 557 ~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 625 (650)
++.+..+. ...++..++.++...|++++|.++++++++... .....++..++.+|...|++++|.+.++
T Consensus 288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 367 (411)
T 4a1s_A 288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAE 367 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 77653221 245677788888888888888888887765420 0113466777888888888888888888
Q ss_pred HHHHCCC
Q 045674 626 SKIGVGY 632 (650)
Q Consensus 626 ~~~~~~~ 632 (650)
++++...
T Consensus 368 ~al~~~~ 374 (411)
T 4a1s_A 368 QHLQLAX 374 (411)
T ss_dssp HHHHHCC
T ss_pred HHHHHHh
Confidence 8877643
No 57
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.67 E-value=2.3e-15 Score=153.62 Aligned_cols=212 Identities=12% Similarity=-0.008 Sum_probs=167.2
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 045674 408 LEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRV-DEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFK 486 (650)
Q Consensus 408 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 486 (650)
+++++..++....... .+...+..++..+...|++ ++|++.|+++++.. +.+...|..++.+|.+.|++++|+..|+
T Consensus 84 ~~~al~~l~~~~~~~~-~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQ-VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCC-CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCc-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4556666666555443 3677777788888888888 88888888888774 5667788888888888888888888888
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------CCHH
Q 045674 487 RMEDEGCDQTVYTYTILINGMFKE---------HRNEEALKLWDMMIDKGITPTAASFRALSIGLCLS--------GKVA 549 (650)
Q Consensus 487 ~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--------g~~~ 549 (650)
++++.. |+...+..+..++... |++++|+..++++++..+. +...+..++.+|... |+++
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHH
Confidence 888764 4567777788888787 8888888888888876544 677788888888877 8888
Q ss_pred HHHHHHHHHhhCCC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 045674 550 RACKILDELAPKGI---IPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMH 625 (650)
Q Consensus 550 ~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 625 (650)
+|++.|+++++..+ .+..++..++.++...|++++|++.|+++++.. +.+..++..++.++...|++++|++.+.
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88888888888777 688888888888888888888888888888876 6677788888888888888888887544
No 58
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.67 E-value=1e-14 Score=137.93 Aligned_cols=227 Identities=11% Similarity=-0.026 Sum_probs=189.0
Q ss_pred HhcCCHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 045674 403 CKNERLEEAMQYFEFCRANGVA---VNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLD 479 (650)
Q Consensus 403 ~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 479 (650)
...|++++|+..++.+.+.... .+..++..++..+...|++++|...|+++++.. +.+..++..++.+|...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence 3468899999999999886421 246778889999999999999999999999985 678999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 045674 480 EALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELA 559 (650)
Q Consensus 480 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 559 (650)
+|...|+++.+..+. +...+..++.++...|++++|...++++.+..+ +..........+...|++++|...++++.
T Consensus 95 ~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 95 AAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP--NDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999999997544 678899999999999999999999999998643 33333334445567799999999999998
Q ss_pred hCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 045674 560 PKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDRERE---IPGKIRTALINALRKAGNADLAIKLMHSKIGVGYDR 634 (650)
Q Consensus 560 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 634 (650)
...+.+...+. ++..+...++.++|.+.++++++.... .+..++..++.+|...|++++|+..++++++..+..
T Consensus 172 ~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 248 (275)
T 1xnf_A 172 EKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN 248 (275)
T ss_dssp HHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT
T ss_pred hcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh
Confidence 87666555544 777788889999999999999865311 125788899999999999999999999999988753
No 59
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.67 E-value=8.6e-12 Score=130.47 Aligned_cols=447 Identities=11% Similarity=0.046 Sum_probs=268.7
Q ss_pred cCCCChHHHHHHHHhccCCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHCC-CCCC
Q 045674 106 LIKLSPNFVSFVLRNHDVSKRPNVGLRLFTWAARQKKYSHNLECYISLIDCLALCGD---VDRVRLVFNELKEKG-FLMT 181 (650)
Q Consensus 106 ~~~~~~~~~~~~l~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~~~ 181 (650)
..+.+.+.-...+..+...+..+.+..+|+.+... +|.+...|...+..-.+.|+ ++.+..+|++.+... .+++
T Consensus 61 ~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~--fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~s 138 (679)
T 4e6h_A 61 EQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR--FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNND 138 (679)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCC
T ss_pred HCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCC
Confidence 35566777777777777778999999999998887 77888999999999999999 999999999999863 1389
Q ss_pred HHHHHHHHHHHHcCCCH--------HHHHHHHHHHHHC-CC-CC-CHHHHHHHHHHHHh---------cCChhHHHHHHH
Q 045674 182 VSAANSLIKSFGGLGMV--------EELLWVWRSMKEN-GI-EP-SLYTYNFLMNGLVN---------SMFIESSELVFK 241 (650)
Q Consensus 182 ~~~~~~l~~~~~~~g~~--------~~a~~~~~~~~~~-~~-~~-~~~~~~~ll~~~~~---------~~~~~~A~~~~~ 241 (650)
+..|...+....+.++. +...++|++.... |. .+ +...|...+..... .++++.+..+|+
T Consensus 139 v~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~ 218 (679)
T 4e6h_A 139 LSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYK 218 (679)
T ss_dssp HHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHH
Confidence 99999888766655543 3455788876653 55 44 45678777765542 345678899999
Q ss_pred HHhcCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCC
Q 045674 242 VMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEK--GIE 319 (650)
Q Consensus 242 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~ 319 (650)
+++......-..+|......-...+ ...+..++.+ ...+++.|...+.++... ++.
T Consensus 219 raL~iP~~~~~~~w~~Y~~fe~~~~-~~~a~~~~~e---------------------~~~~y~~Ar~~~~e~~~~~~~l~ 276 (679)
T 4e6h_A 219 TLLCQPMDCLESMWQRYTQWEQDVN-QLTARRHIGE---------------------LSAQYMNARSLYQDWLNITKGLK 276 (679)
T ss_dssp HHTTSCCSSHHHHHHHHHHHHHHHC-TTTHHHHHHH---------------------HHHHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHhCccHHHHHHHHHHHHHHHhcC-cchHHHHHHH---------------------hhHHHHHHHHHHHHHHHHHHhHh
Confidence 9885311111223322221111101 1111111111 112344555555554321 111
Q ss_pred ----CCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHCC
Q 045674 320 ----IPSHAYNLVIGGLCKVG-KCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLG-------SMNEAINIFERMKYEG 387 (650)
Q Consensus 320 ----~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~A~~~~~~~~~~~ 387 (650)
....... ....-..+ .......+ |...+.--...+ ..+.+..+|+++...-
T Consensus 277 r~~p~~~~~~~--~~~~p~~~~~~~~ql~l---------------W~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~ 339 (679)
T 4e6h_A 277 RNLPITLNQAT--ESNLPKPNEYDVQQLLI---------------WLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV 339 (679)
T ss_dssp CCCCSSSTTCC--TTTSCCTTCCCHHHHHH---------------HHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT
T ss_pred hccccccccch--hccCCCCchhHHHHHHH---------------HHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc
Confidence 0000000 00000000 00011111 111111111110 1234455666665431
Q ss_pred CCCCHHhHHHHHHHHHhcCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---------
Q 045674 388 VEPDEVTYGVIISGLCKNERLEEAM-QYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKG--------- 457 (650)
Q Consensus 388 ~~p~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------- 457 (650)
.-....|...+..+...|+.++|. ++|++.....+ .+...+..++....+.|++++|.++|+.++...
T Consensus 340 -p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P-~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~ 417 (679)
T 4e6h_A 340 -CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIP-NSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALME 417 (679)
T ss_dssp -TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 225566666666667777777775 77777776433 356666667777777777888888877776531
Q ss_pred -CCC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHH
Q 045674 458 -CPR-----------DSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKE-HRNEEALKLWDMMI 524 (650)
Q Consensus 458 -~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~ 524 (650)
.+. ...+|...+....+.|+.+.|..+|.++.+.-.......|...+..-.+. ++.+.|..+|+..+
T Consensus 418 ~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~L 497 (679)
T 4e6h_A 418 DDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGL 497 (679)
T ss_dssp HSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHH
T ss_pred ccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 111 23467777777777888888888888887751112233343333322333 44788888888888
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 045674 525 DKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGII---PETAFEDMITCLCKTGRIKEACKLADGIVDRE 596 (650)
Q Consensus 525 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 596 (650)
+.- .-+...+...+......|+.+.|..+|++++...+. ...+|..++..-...|+.+.+.++.+++.+..
T Consensus 498 k~~-p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 498 KYF-ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp HHH-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred HHC-CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 752 335666667777777788888888888888877662 55778888888888888888888888888774
No 60
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.66 E-value=7.8e-14 Score=134.04 Aligned_cols=222 Identities=12% Similarity=0.071 Sum_probs=174.7
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-------HcCCH-------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 045674 409 EEAMQYFEFCRANGVAVNAMFYSSLIDGLG-------KAGRV-------DEAEELFEEMVEKGCPRDSYCYNVLIDALAK 474 (650)
Q Consensus 409 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 474 (650)
++|...|+++....+. +...|..++..+. ..|++ ++|..+|++.++.-.|.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~p~-~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 5677778777776544 6677777776665 34775 8899999999883225677788889999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHH
Q 045674 475 CGKLDEALALFKRMEDEGCDQTVY-TYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLC-LSGKVARAC 552 (650)
Q Consensus 475 ~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~ 552 (650)
.|++++|.++|+++++..+. +.. .|..++..+.+.|++++|..+|+++++..+. +...+...+.... ..|++++|.
T Consensus 112 ~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHH
T ss_pred cCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999886433 333 7888888888899999999999999876543 4455544444332 369999999
Q ss_pred HHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045674 553 KILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDRE-REI--PGKIRTALINALRKAGNADLAIKLMHSKIG 629 (650)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 629 (650)
.+|+++++..|.+..+|..++..+...|++++|+.+|+++++.. .+| ....|..++..+.+.|+.++|..+++++++
T Consensus 190 ~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 190 KIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999998888888999999999999999999999999999862 243 467888888888999999999999999999
Q ss_pred CCCC
Q 045674 630 VGYD 633 (650)
Q Consensus 630 ~~~~ 633 (650)
..+.
T Consensus 270 ~~p~ 273 (308)
T 2ond_A 270 AFRE 273 (308)
T ss_dssp HTTT
T ss_pred Hccc
Confidence 8776
No 61
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.66 E-value=3.3e-14 Score=125.24 Aligned_cols=168 Identities=15% Similarity=0.153 Sum_probs=152.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 045674 426 NAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILIN 505 (650)
Q Consensus 426 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 505 (650)
+..+|..++..|...|++++|++.|++.++.. |.+...+..++.+|.+.|++++|...+.......+. +...+..++.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence 56788899999999999999999999999986 778899999999999999999999999999887554 7778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHH
Q 045674 506 GMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEA 585 (650)
Q Consensus 506 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 585 (650)
.+...++++.|...+.++.+..+. +...+..++.++...|++++|++.|+++++.+|.+..++..++.++...|++++|
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 899999999999999999986554 7888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcC
Q 045674 586 CKLADGIVDRE 596 (650)
Q Consensus 586 ~~~~~~~~~~~ 596 (650)
++.|+++++.+
T Consensus 161 ~~~~~~al~~~ 171 (184)
T 3vtx_A 161 VKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHhCC
Confidence 99999999864
No 62
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.66 E-value=4.4e-15 Score=149.35 Aligned_cols=301 Identities=17% Similarity=0.126 Sum_probs=186.6
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-
Q 045674 320 IPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPN----VAIYTALIDSYAKLGSMNEAINIFERMKYE----GVEP- 390 (650)
Q Consensus 320 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~p- 390 (650)
.....+......+...|++++|...|+++++.... + ...+..++..|...|++++|...++++... +..|
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 34555667777888888888888888888876322 2 346777778888888888888888876432 1111
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHHcCC--------------------HHH
Q 045674 391 DEVTYGVIISGLCKNERLEEAMQYFEFCRANGVA-VN----AMFYSSLIDGLGKAGR--------------------VDE 445 (650)
Q Consensus 391 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~--------------------~~~ 445 (650)
....+..+...+...|++++|...++++.+.... .+ ..++..+...|...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 1345666777777888888888888777664211 11 3356667777777777 777
Q ss_pred HHHHHHHHHHc----C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCCHHH
Q 045674 446 AEELFEEMVEK----G-CPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCD-QT----VYTYTILINGMFKEHRNEE 515 (650)
Q Consensus 446 A~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~ 515 (650)
|...+++.... + .+....++..++.+|...|++++|...+++..+.... ++ ..++..++..+...|++++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 245 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 77777766542 1 0112345666777777777777777777776543111 12 2256666677777777777
Q ss_pred HHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC------cHHHHHHHHHHHHHcCCHHH
Q 045674 516 ALKLWDMMIDKGIT-PT----AASFRALSIGLCLSGKVARACKILDELAPKGII------PETAFEDMITCLCKTGRIKE 584 (650)
Q Consensus 516 A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~ 584 (650)
|...++++.+.... .+ ..++..++..+...|++++|..+++++.+.... ...++..++.++...|++++
T Consensus 246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 325 (406)
T 3sf4_A 246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQ 325 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 77777776642111 11 345566677777777777777777776643211 24566667777777777777
Q ss_pred HHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCCHHHHH
Q 045674 585 ACKLADGIVDREREIP-----GKIRTALINALRKAGNADLAI 621 (650)
Q Consensus 585 A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~ 621 (650)
|.+.++++++...... ..++..++.++...|+...+.
T Consensus 326 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ 367 (406)
T 3sf4_A 326 AMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTN 367 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC-
T ss_pred HHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHHH
Confidence 7777777776541112 123444555555555544433
No 63
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.65 E-value=3.5e-16 Score=163.21 Aligned_cols=117 Identities=9% Similarity=0.065 Sum_probs=76.0
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 045674 252 VVTYNTMIKGYCKVGKTQKAMEKFRAMEA---RNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLV 328 (650)
Q Consensus 252 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 328 (650)
..+||+||++||+.|+.++|.++|++|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..+|+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 44666666666666666666666665543 356666666666666666666666666666666666666666666666
Q ss_pred HHHHHhcCCh-HHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 045674 329 IGGLCKVGKC-IEGHAIFESMIRRGCQPNVAIYTALIDSYA 368 (650)
Q Consensus 329 ~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 368 (650)
|.++++.|+. ++|.++|++|.+.|+.||..+|+.++..+.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~e 247 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEED 247 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhh
Confidence 6666666653 556666666666666666666666654433
No 64
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.65 E-value=5e-15 Score=148.95 Aligned_cols=306 Identities=14% Similarity=0.040 Sum_probs=229.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCc-
Q 045674 284 QPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIP---SHAYNLVIGGLCKVGKCIEGHAIFESMIRR----GCQP- 355 (650)
Q Consensus 284 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~- 355 (650)
......+......+...|++++|...|++..+...... ..++..+...+...|++++|...+++++.. +..+
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 44566777888999999999999999999988743311 357888899999999999999999988654 2122
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHhHHHHHHHHHhcCC--------------------HHH
Q 045674 356 NVAIYTALIDSYAKLGSMNEAINIFERMKYEGV-EPD----EVTYGVIISGLCKNER--------------------LEE 410 (650)
Q Consensus 356 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~--------------------~~~ 410 (650)
....+..++..|...|++++|+..+++...... ..+ ..++..+...|...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 245778889999999999999999998865310 012 3477888888999999 999
Q ss_pred HHHHHHHHHHC----CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHHcCCHHH
Q 045674 411 AMQYFEFCRAN----GVA-VNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGC-PRD----SYCYNVLIDALAKCGKLDE 480 (650)
Q Consensus 411 a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~ 480 (650)
|...+++.... +.. ....++..++..+...|++++|...++++.+... .++ ..++..++.+|...|++++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 245 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 99999876543 111 1245678889999999999999999999886410 122 2378889999999999999
Q ss_pred HHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHH
Q 045674 481 ALALFKRMEDEGCD-QT----VYTYTILINGMFKEHRNEEALKLWDMMIDKGIT-PT----AASFRALSIGLCLSGKVAR 550 (650)
Q Consensus 481 A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~g~~~~ 550 (650)
|...+++..+.... .+ ..++..++..+...|++++|...++++.+.... .+ ..++..++.++...|++++
T Consensus 246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 325 (406)
T 3sf4_A 246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQ 325 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 99999998764211 11 567888899999999999999999998853111 12 4577889999999999999
Q ss_pred HHHHHHHHhhCCC----C--cHHHHHHHHHHHHHcCCHHHHHHHH
Q 045674 551 ACKILDELAPKGI----I--PETAFEDMITCLCKTGRIKEACKLA 589 (650)
Q Consensus 551 A~~~~~~~~~~~~----~--~~~~~~~l~~~~~~~g~~~~A~~~~ 589 (650)
|.++++++.+... . ...++..++.++...|+...+..-+
T Consensus 326 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~ 370 (406)
T 3sf4_A 326 AMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSI 370 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC----
T ss_pred HHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHHHHHH
Confidence 9999999875421 1 3456667777777777666444333
No 65
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.64 E-value=7.7e-15 Score=143.30 Aligned_cols=268 Identities=16% Similarity=0.114 Sum_probs=158.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHC----C-CCCCHHHHHHHH
Q 045674 364 IDSYAKLGSMNEAINIFERMKYEGVEPD----EVTYGVIISGLCKNERLEEAMQYFEFCRAN----G-VAVNAMFYSSLI 434 (650)
Q Consensus 364 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~ 434 (650)
+..+...|++++|+.+|+++.+.... + ...+..+...+...|++++|...++++... + ......++..+.
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 90 (338)
T 3ro2_A 12 GERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG 90 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 34444444445554444444433111 1 123444444444455555555544443221 1 001233445555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHH
Q 045674 435 DGLGKAGRVDEAEELFEEMVEKGC-PRD----SYCYNVLIDALAKCGK--------------------LDEALALFKRME 489 (650)
Q Consensus 435 ~~~~~~~~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~~~ 489 (650)
..+...|++++|...+++..+... ..+ ..++..++..|...|+ +++|...+++..
T Consensus 91 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~ 170 (338)
T 3ro2_A 91 NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENL 170 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 566666666666666665544210 011 2355666666666666 666766666554
Q ss_pred Hc----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 045674 490 DE----GC-DQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGIT-PT----AASFRALSIGLCLSGKVARACKILDELA 559 (650)
Q Consensus 490 ~~----~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 559 (650)
+. +. ......+..++..+...|++++|...++++.+.... ++ ..++..++..+...|++++|.++++++.
T Consensus 171 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 250 (338)
T 3ro2_A 171 SLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL 250 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 31 10 112345666777777888888888888777642110 11 2366777888888888888888888877
Q ss_pred hCCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-C----CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045674 560 PKGII------PETAFEDMITCLCKTGRIKEACKLADGIVDRERE-I----PGKIRTALINALRKAGNADLAIKLMHSKI 628 (650)
Q Consensus 560 ~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 628 (650)
+..+. ...++..++.++...|++++|.+.++++++.... . ...++..++.+|...|++++|...+++++
T Consensus 251 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 330 (338)
T 3ro2_A 251 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 330 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 54222 2567788889999999999999999888764211 1 13467788889999999999999999988
Q ss_pred HCCC
Q 045674 629 GVGY 632 (650)
Q Consensus 629 ~~~~ 632 (650)
+...
T Consensus 331 ~~~~ 334 (338)
T 3ro2_A 331 EISR 334 (338)
T ss_dssp HC--
T ss_pred HHHH
Confidence 8643
No 66
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.63 E-value=5.4e-15 Score=149.05 Aligned_cols=275 Identities=13% Similarity=0.062 Sum_probs=165.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHc----CC-CcCHHHH
Q 045674 290 YMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPS----HAYNLVIGGLCKVGKCIEGHAIFESMIRR----GC-QPNVAIY 360 (650)
Q Consensus 290 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~ 360 (650)
+..+...+...|++++|...|+++.+.... +. .++..+...+...|++++|...++++++. +. ......+
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 334445555666666666666665554322 21 24445555555555555555555554432 00 1112334
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHH
Q 045674 361 TALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANG-VAVNAMFYSSLIDGLGK 439 (650)
Q Consensus 361 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~ 439 (650)
..+...|...|++++|+..++++.... ...+ ......++..+...|..
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~-------------------------------~~~~~~~~~~~~~~~l~~~~~~ 178 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLA-------------------------------RQLGDRLSEGRALYNLGNVYHA 178 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH-------------------------------HHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHH-------------------------------HHhhchHHHHHHHHHHHHHHHH
Confidence 444444444555555554444443210 0000 01123345555666666
Q ss_pred cCC-----------------HHHHHHHHHHHHHc----C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC
Q 045674 440 AGR-----------------VDEAEELFEEMVEK----G-CPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCD-QT 496 (650)
Q Consensus 440 ~~~-----------------~~~A~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~ 496 (650)
.|+ +++|++.+++..+. + .+....++..++..|...|++++|+..+++..+.... .+
T Consensus 179 ~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 258 (411)
T 4a1s_A 179 KGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD 258 (411)
T ss_dssp HHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC
Confidence 666 66666666655442 1 0112346677778888888888888888877653111 11
Q ss_pred ----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC---
Q 045674 497 ----VYTYTILINGMFKEHRNEEALKLWDMMIDKGIT-----PTAASFRALSIGLCLSGKVARACKILDELAPKGII--- 564 (650)
Q Consensus 497 ----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--- 564 (650)
...+..++..|...|++++|...++++.+.... ....++..++.++...|++++|..+++++.+....
T Consensus 259 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 338 (411)
T 4a1s_A 259 RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD 338 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence 236777888888899999999988887753111 11456778888999999999999999988764222
Q ss_pred ---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 045674 565 ---PETAFEDMITCLCKTGRIKEACKLADGIVDRE 596 (650)
Q Consensus 565 ---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 596 (650)
...++..++.++...|++++|.++++++++..
T Consensus 339 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 373 (411)
T 4a1s_A 339 RIGEARACWSLGNAHSAIGGHERALKYAEQHLQLA 373 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 34578889999999999999999999998763
No 67
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.62 E-value=9.7e-16 Score=159.90 Aligned_cols=118 Identities=11% Similarity=0.157 Sum_probs=88.1
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 045674 392 EVTYGVIISGLCKNERLEEAMQYFEFCRA---NGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVL 468 (650)
Q Consensus 392 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 468 (650)
..||+++|++||+.|++++|.++|+.|.+ .|+.||..+|+.||.+||+.|++++|.++|++|.+.|+.||..+|+.+
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 45777777777777777777777766653 367777777777777777777777777777777777777777777777
Q ss_pred HHHHHHcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 045674 469 IDALAKCGK-LDEALALFKRMEDEGCDQTVYTYTILINGMFK 509 (650)
Q Consensus 469 ~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 509 (650)
+.++++.|+ .++|.++|++|.+.|+.||..+|+.++.+..+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 777777776 46777777777777777777777777654433
No 68
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.62 E-value=7e-14 Score=139.23 Aligned_cols=231 Identities=10% Similarity=0.027 Sum_probs=160.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--C----CCCHHHHH
Q 045674 398 IISGLCKNERLEEAMQYFEFCRAN----GVAV-NAMFYSSLIDGLGKAGRVDEAEELFEEMVEKG--C----PRDSYCYN 466 (650)
Q Consensus 398 l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~----~~~~~~~~ 466 (650)
....+...|++++|+..++++.+. +..+ ...++..++..|...|++++|...+++..+.. . +....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 444556677777777777766553 1111 23556677777777777777777777776531 1 11234677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHH
Q 045674 467 VLIDALAKCGKLDEALALFKRMEDEGCD-QT----VYTYTILINGMFKEHRNEEALKLWDMMIDK----GI-TPTAASFR 536 (650)
Q Consensus 467 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~-~p~~~~~~ 536 (650)
.++.+|...|++++|+..+++..+.... ++ ..++..++.+|...|++++|+..++++.+. +. .....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 7788888888888888888877653111 11 246777888888889999998888888761 22 22456778
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCC-----CcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 045674 537 ALSIGLCLSGKVARACKILDELAPKGI-----IPETAFEDMITCLCKTGR---IKEACKLADGIVDREREIPGKIRTALI 608 (650)
Q Consensus 537 ~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~ 608 (650)
.++.++...|++++|..+++++.+... .....+..++.++...|+ +++|+.++++.. ..+....++..++
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~--~~~~~~~~~~~la 346 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM--LYADLEDFAIDVA 346 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc--CHHHHHHHHHHHH
Confidence 888888899999999999988876421 122335678888888888 778888887762 1123345677889
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC
Q 045674 609 NALRKAGNADLAIKLMHSKIGV 630 (650)
Q Consensus 609 ~~~~~~g~~~~A~~~~~~~~~~ 630 (650)
..|...|++++|...++++++.
T Consensus 347 ~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 347 KYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHH
Confidence 9999999999999999998874
No 69
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.61 E-value=6e-14 Score=128.44 Aligned_cols=207 Identities=10% Similarity=-0.013 Sum_probs=165.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 045674 426 NAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILIN 505 (650)
Q Consensus 426 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 505 (650)
+...+...+..+...|++++|+..|+++++...+++...+..++.++...|++++|+..+++..+..+. +...|..++.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHHH
Confidence 567888889999999999999999999998763278888888999999999999999999999987554 6778888999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--cHHHHHHHHHHH
Q 045674 506 GMFKEHRNEEALKLWDMMIDKGITPTA-------ASFRALSIGLCLSGKVARACKILDELAPKGII--PETAFEDMITCL 576 (650)
Q Consensus 506 ~~~~~~~~~~A~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~ 576 (650)
++...|++++|+..++++++..+. +. ..+..++..+...|++++|++.++++++.+|. +..++..++.++
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 163 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLF 163 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 999999999999999999986544 45 45788888899999999999999999998888 788999999998
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCChhhhhhhh
Q 045674 577 CKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYDRMGSIKRRV 642 (650)
Q Consensus 577 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 642 (650)
...| ..+++++.... ..+...+... .....+.+++|+..++++++..+........+.
T Consensus 164 ~~~~-----~~~~~~a~~~~-~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~ 221 (228)
T 4i17_A 164 YNNG-----ADVLRKATPLA-SSNKEKYASE--KAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQD 221 (228)
T ss_dssp HHHH-----HHHHHHHGGGT-TTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHH-----HHHHHHHHhcc-cCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 7655 44456665554 3344444333 345567789999999999999888665555443
No 70
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.61 E-value=3.1e-14 Score=150.82 Aligned_cols=169 Identities=15% Similarity=0.084 Sum_probs=130.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 045674 459 PRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRAL 538 (650)
Q Consensus 459 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l 538 (650)
|.+...++.|+.+|.+.|++++|++.|++.++..+. +..+|..++.+|.+.|++++|+..|+++++..+. +...+..+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 445667777777788888888888888877776544 6777777777788888888888888887776544 56777778
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 045674 539 SIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNAD 618 (650)
Q Consensus 539 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 618 (650)
+.++...|++++|++.|+++++.+|.+..++..++.+|...|++++|++.|+++++.+ +.+..++..++.+|...|+++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHH
Confidence 8888888888888888888888777777888888888888888888888888888776 667777788888888888888
Q ss_pred HHHHHHHHHHHC
Q 045674 619 LAIKLMHSKIGV 630 (650)
Q Consensus 619 ~A~~~~~~~~~~ 630 (650)
+|.+.++++++.
T Consensus 163 ~A~~~~~kal~l 174 (723)
T 4gyw_A 163 DYDERMKKLVSI 174 (723)
T ss_dssp THHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 888887777764
No 71
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.60 E-value=4.4e-14 Score=144.14 Aligned_cols=215 Identities=11% Similarity=-0.016 Sum_probs=182.5
Q ss_pred HHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 045674 373 MNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERL-EEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFE 451 (650)
Q Consensus 373 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 451 (650)
+++++..+++..... ..+...+..+...+...|++ ++|++.|+++.+..+. +...|..++.+|...|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 566666776665442 23677788888888888999 9999999888887655 67888889999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--------CCHH
Q 045674 452 EMVEKGCPRDSYCYNVLIDALAKC---------GKLDEALALFKRMEDEGCDQTVYTYTILINGMFKE--------HRNE 514 (650)
Q Consensus 452 ~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~ 514 (650)
++++.. |+...+..++.+|... |++++|+..|+++.+..+. +...|..++.+|... |+++
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHH
Confidence 998874 6678888899999998 9999999999999887654 788899999999888 9999
Q ss_pred HHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045674 515 EALKLWDMMIDKGIT--PTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGI 592 (650)
Q Consensus 515 ~A~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 592 (650)
+|+..|+++++..+. .+...+..++.+|...|++++|.+.|+++.+..|.+..++..++.++...|++++|++.+.++
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999986441 378899999999999999999999999999999999999999999999999999998876544
No 72
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.60 E-value=1.9e-13 Score=136.12 Aligned_cols=232 Identities=9% Similarity=-0.042 Sum_probs=173.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC------CCHHHHH
Q 045674 363 LIDSYAKLGSMNEAINIFERMKYE----GVEP-DEVTYGVIISGLCKNERLEEAMQYFEFCRANGVA------VNAMFYS 431 (650)
Q Consensus 363 l~~~~~~~~~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------~~~~~~~ 431 (650)
.+..+...|++++|+..|++.... +-.+ ...++..+...|...|++++|+..+++..+.... ....++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 566677888888988888888653 1111 2356777888888889999998888877653111 1235678
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CC-CCCHHHHH
Q 045674 432 SLIDGLGKAGRVDEAEELFEEMVEKGC-PRD----SYCYNVLIDALAKCGKLDEALALFKRMEDE----GC-DQTVYTYT 501 (650)
Q Consensus 432 ~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~ 501 (650)
.++.+|...|++++|...++++++... ..+ ..++..++.+|...|++++|+..+++..+. +. .....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 888999999999999999998876410 011 247888999999999999999999998772 22 33567788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHhhCCCCcHHHHHHHHH
Q 045674 502 ILINGMFKEHRNEEALKLWDMMIDKG----ITPTAASFRALSIGLCLSGK---VARACKILDELAPKGIIPETAFEDMIT 574 (650)
Q Consensus 502 ~l~~~~~~~~~~~~A~~~~~~~~~~~----~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~l~~ 574 (650)
.++.++...|++++|...++++.+.. -......+..++..+...|+ +++|+.++++.. ..+....++..++.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~-~~~~~~~~~~~la~ 347 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM-LYADLEDFAIDVAK 347 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc-CHHHHHHHHHHHHH
Confidence 89999999999999999999987531 11122335678888888998 888888887772 11224567888999
Q ss_pred HHHHcCCHHHHHHHHHHHHHc
Q 045674 575 CLCKTGRIKEACKLADGIVDR 595 (650)
Q Consensus 575 ~~~~~g~~~~A~~~~~~~~~~ 595 (650)
++...|++++|.+.++++++.
T Consensus 348 ~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHH
Confidence 999999999999999999865
No 73
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.59 E-value=9.9e-14 Score=135.36 Aligned_cols=203 Identities=14% Similarity=0.046 Sum_probs=134.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----CCHHHHHHHHHHHHHcCC--------------------HHHHHH
Q 045674 394 TYGVIISGLCKNERLEEAMQYFEFCRANGVA-----VNAMFYSSLIDGLGKAGR--------------------VDEAEE 448 (650)
Q Consensus 394 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~--------------------~~~A~~ 448 (650)
.+..+...+...|++++|...+++..+.... ....++..+...+...|+ +++|..
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 3444444455555555555555444322100 012345555666666666 666666
Q ss_pred HHHHHHHc----C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-C----CHHHHHHHHHHHHhcCCHHHHHH
Q 045674 449 LFEEMVEK----G-CPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCD-Q----TVYTYTILINGMFKEHRNEEALK 518 (650)
Q Consensus 449 ~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~A~~ 518 (650)
.+++.... + .+....++..++..|...|++++|...+++..+.... + ...++..++..+...|++++|..
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 66665432 1 0112346777788888888888888888877653110 1 13367778888889999999999
Q ss_pred HHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC------cHHHHHHHHHHHHHcCCHHHHHH
Q 045674 519 LWDMMIDKGIT-PT----AASFRALSIGLCLSGKVARACKILDELAPKGII------PETAFEDMITCLCKTGRIKEACK 587 (650)
Q Consensus 519 ~~~~~~~~~~~-p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~ 587 (650)
.++++.+.... .+ ..++..++..+...|++++|..+++++.+..+. ...++..++.++...|++++|.+
T Consensus 245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 324 (338)
T 3ro2_A 245 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH 324 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 99888753111 11 456778889999999999999999998764322 24578889999999999999999
Q ss_pred HHHHHHHcC
Q 045674 588 LADGIVDRE 596 (650)
Q Consensus 588 ~~~~~~~~~ 596 (650)
.++++++..
T Consensus 325 ~~~~a~~~~ 333 (338)
T 3ro2_A 325 FAEKHLEIS 333 (338)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHHHH
Confidence 999998763
No 74
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.58 E-value=1.9e-12 Score=124.38 Aligned_cols=218 Identities=9% Similarity=0.072 Sum_probs=161.3
Q ss_pred HHHHHHHHHHHHCCCCCCHHhHHHHHHHHH-------hcCCH-------HHHHHHHHHHHH-CCCCCCHHHHHHHHHHHH
Q 045674 374 NEAINIFERMKYEGVEPDEVTYGVIISGLC-------KNERL-------EEAMQYFEFCRA-NGVAVNAMFYSSLIDGLG 438 (650)
Q Consensus 374 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-------~~g~~-------~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~ 438 (650)
++|+.+|+++.... .-+...|..++..+. +.|++ ++|..+|++..+ ..+. +...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~-~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK-NMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHH
Confidence 56666676666532 124555655555544 34665 888888888887 3443 6677888888888
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hcCCHHHH
Q 045674 439 KAGRVDEAEELFEEMVEKGCPRDSY-CYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMF-KEHRNEEA 516 (650)
Q Consensus 439 ~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A 516 (650)
..|++++|..+|+++++.. +.+.. +|..++..+.+.|++++|..+|+++.+..+. +...|...+.... ..|++++|
T Consensus 111 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHH
T ss_pred hcCCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHcCCHHHH
Confidence 8888888888888888853 33444 7888888888888999999999888876543 4455544433322 26899999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC---CCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045674 517 LKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPK---GII-PETAFEDMITCLCKTGRIKEACKLADGI 592 (650)
Q Consensus 517 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 592 (650)
..+|+++++..+. +...+..++..+...|++++|..+|++++.. .+. ...+|..++..+...|+.++|..+++++
T Consensus 189 ~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999988876444 6778888888888889999999999999885 332 5678888888888899999999999998
Q ss_pred HHcC
Q 045674 593 VDRE 596 (650)
Q Consensus 593 ~~~~ 596 (650)
++..
T Consensus 268 ~~~~ 271 (308)
T 2ond_A 268 FTAF 271 (308)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 8774
No 75
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.57 E-value=2.2e-13 Score=119.98 Aligned_cols=171 Identities=16% Similarity=0.089 Sum_probs=139.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 045674 462 SYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIG 541 (650)
Q Consensus 462 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 541 (650)
...+..++..+...|++++|...++++.+..+. +...+..++..+...|++++|...++++.+..+. +...+..++..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAF-DVDVALHLGIAYVKTGAVDRGTELLERSLADAPD-NVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHH
Confidence 345666777788888888888888887765433 6777888888888888888888888888876433 67778888888
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 045674 542 LCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAI 621 (650)
Q Consensus 542 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 621 (650)
+...|++++|.++++++.+..+.+..++..++.++...|++++|.++++++++.. +.+..++..++.++...|++++|.
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence 8888999999999998888877788888889999999999999999999988876 667888888999999999999999
Q ss_pred HHHHHHHHCCCCCh
Q 045674 622 KLMHSKIGVGYDRM 635 (650)
Q Consensus 622 ~~~~~~~~~~~~~~ 635 (650)
..++++++..+...
T Consensus 165 ~~~~~~~~~~~~~~ 178 (186)
T 3as5_A 165 PHFKKANELDEGAS 178 (186)
T ss_dssp HHHHHHHHHHHCCC
T ss_pred HHHHHHHHcCCCch
Confidence 99999888765543
No 76
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.56 E-value=8e-13 Score=120.90 Aligned_cols=209 Identities=11% Similarity=0.002 Sum_probs=170.0
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 045674 390 PDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLI 469 (650)
Q Consensus 390 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 469 (650)
.|...+......+...|++++|+..|+.+.+..+.++...+..++.++...|++++|+..+++.++.. +.+...+..++
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 35678888899999999999999999999988764577888889999999999999999999999975 66788999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHH
Q 045674 470 DALAKCGKLDEALALFKRMEDEGCDQTV-------YTYTILINGMFKEHRNEEALKLWDMMIDKGITPT---AASFRALS 539 (650)
Q Consensus 470 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~---~~~~~~l~ 539 (650)
.+|...|++++|+..+++..+..+. +. ..|..++..+...|++++|+..++++++. .|+ ...+..++
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 9999999999999999999987544 55 56888888999999999999999999985 444 46777888
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 045674 540 IGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINA 610 (650)
Q Consensus 540 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 610 (650)
.++... +..+++++...+..+...+... .....+.+++|+..++++++.. |.+..+...+...
T Consensus 161 ~~~~~~-----~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~-p~~~~~~~~l~~i 223 (228)
T 4i17_A 161 VLFYNN-----GADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTLS-PNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHH-----HHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcC-CCCHHHHHHHHHH
Confidence 887654 4455677776655554444433 3445677999999999999986 6677766666544
No 77
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.56 E-value=1e-13 Score=133.74 Aligned_cols=239 Identities=15% Similarity=0.052 Sum_probs=174.1
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------C-
Q 045674 392 EVTYGVIISGLCKNERLEEAMQYFEFCRAN-------GVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEK------G- 457 (650)
Q Consensus 392 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~- 457 (650)
..++..+...+...|++++|..+++++.+. ........+..++..|...|++++|...+++++.. +
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 567888888999999999999999988773 22335667888999999999999999999998874 1
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----
Q 045674 458 CPRDSYCYNVLIDALAKCGKLDEALALFKRMEDE------GC-DQTVYTYTILINGMFKEHRNEEALKLWDMMIDK---- 526 (650)
Q Consensus 458 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---- 526 (650)
.+....++..++..|...|++++|...++++.+. +. ......+..++..+...|++++|+.+++++.+.
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 1334567888999999999999999999998764 11 224556788888999999999999999998864
Q ss_pred --CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC---------CCc------HHHHHHHHHHHHHcCCHHHHHHH
Q 045674 527 --GITP-TAASFRALSIGLCLSGKVARACKILDELAPKG---------IIP------ETAFEDMITCLCKTGRIKEACKL 588 (650)
Q Consensus 527 --~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------~~~------~~~~~~l~~~~~~~g~~~~A~~~ 588 (650)
+..| ...++..++.++...|++++|.++++++.+.. +.. ...+..++..+...+.+.+|...
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 266 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGW 266 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC--
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 1122 34467888999999999999999999988631 111 22333344445556667777777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 045674 589 ADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVG 631 (650)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 631 (650)
++++.... +....++..++.+|.+.|++++|++.++++++..
T Consensus 267 ~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 308 (311)
T 3nf1_A 267 YKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR 308 (311)
T ss_dssp -------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 88777654 5567788999999999999999999999998753
No 78
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.55 E-value=8e-13 Score=131.24 Aligned_cols=230 Identities=11% Similarity=0.033 Sum_probs=152.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCC-C----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CC----CCHHHHH
Q 045674 398 IISGLCKNERLEEAMQYFEFCRANGVA-V----NAMFYSSLIDGLGKAGRVDEAEELFEEMVEKG--CP----RDSYCYN 466 (650)
Q Consensus 398 l~~~~~~~g~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~----~~~~~~~ 466 (650)
....+...|++++|+..|+++.+.... + ...++..++.+|...|+++.|...+++..+.. .. ....+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 334455667777777777666543111 1 23456667777777777777777777766531 01 1234567
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHH
Q 045674 467 VLIDALAKCGKLDEALALFKRMEDE----GCD-QTVYTYTILINGMFKEHRNEEALKLWDMMID-----KGITPTAASFR 536 (650)
Q Consensus 467 ~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~p~~~~~~ 536 (650)
.++.+|...|++++|++.+++..+. +.. ....++..++.+|...|++++|...++++++ ..+. ...++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHH
Confidence 7777788888888888877776552 111 1234667777888888888888888888876 4333 366777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCC-----cHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 045674 537 ALSIGLCLSGKVARACKILDELAPKGII-----PETAFEDMITCLCKTGR---IKEACKLADGIVDREREIPGKIRTALI 608 (650)
Q Consensus 537 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~ 608 (650)
.++.++.+.|++++|..+++++.+.... ....+..+...+...|+ +.+|+.++++.. ..+.....+..++
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~--~~~~~~~~~~~la 343 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN--LHAYIEACARSAA 343 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC--ChhHHHHHHHHHH
Confidence 8888888888888888888888764221 23445666777777777 777777777632 1122344666788
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC
Q 045674 609 NALRKAGNADLAIKLMHSKIGV 630 (650)
Q Consensus 609 ~~~~~~g~~~~A~~~~~~~~~~ 630 (650)
..|...|++++|...++++++.
T Consensus 344 ~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 344 AVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHH
Confidence 8888889999998888888763
No 79
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.54 E-value=5.9e-14 Score=135.37 Aligned_cols=168 Identities=16% Similarity=0.125 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc------C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCC
Q 045674 428 MFYSSLIDGLGKAGRVDEAEELFEEMVEK------G-CPRDSYCYNVLIDALAKCGKLDEALALFKRMEDE------GCD 494 (650)
Q Consensus 428 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~ 494 (650)
..+..++..+...|++++|...++++.+. + .+.....+..++.+|...|++++|+..++++.+. +..
T Consensus 112 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 191 (311)
T 3nf1_A 112 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDD 191 (311)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTC
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34445555555555555555555555442 1 1122344555666666666666666666665543 111
Q ss_pred -CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 045674 495 -QTVYTYTILINGMFKEHRNEEALKLWDMMIDK-------GITPT-------AASFRALSIGLCLSGKVARACKILDELA 559 (650)
Q Consensus 495 -~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 559 (650)
....++..++.++...|++++|..+++++.+. ...+. ...+..++..+...+.+.+|...+..+.
T Consensus 192 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 271 (311)
T 3nf1_A 192 PNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACK 271 (311)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-------
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcC
Confidence 12345556666666666666666666666542 01111 1112223333445566777777788777
Q ss_pred hCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 045674 560 PKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDR 595 (650)
Q Consensus 560 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 595 (650)
...+....++..++.++...|++++|.++++++++.
T Consensus 272 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 272 VDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp --CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 766667888999999999999999999999998865
No 80
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.53 E-value=6.9e-12 Score=124.31 Aligned_cols=301 Identities=13% Similarity=0.053 Sum_probs=189.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCH----HhH
Q 045674 325 YNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNV----AIYTALIDSYAKLGSMNEAINIFERMKYEGV-EPDE----VTY 395 (650)
Q Consensus 325 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~p~~----~~~ 395 (650)
.......+...|++++|...+++.+......+. ..++.+...+...|++++|...+++...... ..+. .++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 344555667788888888888888775322222 2455667777888888888888887764210 1121 234
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----CCHHH
Q 045674 396 GVIISGLCKNERLEEAMQYFEFCRAN----GVA--V-NAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCP----RDSYC 464 (650)
Q Consensus 396 ~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~ 464 (650)
..+...+...|++++|...+++..+. +.. + ....+..+...+...|++++|...+++....... ....+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 55666777888888888888776543 111 1 2345566777788888888888888887764311 12355
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHH----HHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHH
Q 045674 465 YNVLIDALAKCGKLDEALALFKRMEDEGCDQT--VYTYT----ILINGMFKEHRNEEALKLWDMMIDKGITP---TAASF 535 (650)
Q Consensus 465 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~----~l~~~~~~~~~~~~A~~~~~~~~~~~~~p---~~~~~ 535 (650)
+..+...+...|++++|...+++.......++ ..... ..+..+...|++++|...+++.......+ ....+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 67777778888888888888887765321111 11111 22334667888888888887776543221 12345
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCC----C--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 045674 536 RALSIGLCLSGKVARACKILDELAPKGI----I--PETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALIN 609 (650)
Q Consensus 536 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 609 (650)
..++..+...|++++|...++++..... . ...++..++.++...|++++|...+++++... ++ .....
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~-~~-----~g~~~ 330 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA-NR-----TGFIS 330 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HH-----HCCCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh-cc-----ccHHH
Confidence 6677777788888888888887764311 1 12356667778888888888888888887542 11 11223
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCC
Q 045674 610 ALRKAGNADLAIKLMHSKIGVGYD 633 (650)
Q Consensus 610 ~~~~~g~~~~A~~~~~~~~~~~~~ 633 (650)
.+...| +....+++++++.++.
T Consensus 331 ~~~~~g--~~~~~ll~~~~~~~~~ 352 (373)
T 1hz4_A 331 HFVIEG--EAMAQQLRQLIQLNTL 352 (373)
T ss_dssp HHHTTH--HHHHHHHHHHHHTTCS
T ss_pred HHHHcc--HHHHHHHHHHHhCCCC
Confidence 344444 6677777777776664
No 81
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.53 E-value=4.8e-13 Score=141.76 Aligned_cols=167 Identities=19% Similarity=0.128 Sum_probs=150.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 045674 426 NAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILIN 505 (650)
Q Consensus 426 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 505 (650)
+...|+.++.+|.+.|++++|++.|+++++.. +.+...++.++.+|.+.|++++|++.|+++++..+. +...|..++.
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 46778889999999999999999999999875 677889999999999999999999999999987654 7888999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHH
Q 045674 506 GMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEA 585 (650)
Q Consensus 506 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 585 (650)
++...|++++|++.|+++++..+. +...+..++.+|...|++++|++.|+++++..|.+..++..++.++...|++++|
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 999999999999999999987555 7788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHc
Q 045674 586 CKLADGIVDR 595 (650)
Q Consensus 586 ~~~~~~~~~~ 595 (650)
.+.++++++.
T Consensus 165 ~~~~~kal~l 174 (723)
T 4gyw_A 165 DERMKKLVSI 174 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999988764
No 82
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.52 E-value=5.5e-12 Score=125.14 Aligned_cols=233 Identities=9% Similarity=-0.056 Sum_probs=170.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----C-CCHHH
Q 045674 361 TALIDSYAKLGSMNEAINIFERMKYEGV-EPD----EVTYGVIISGLCKNERLEEAMQYFEFCRANGV-----A-VNAMF 429 (650)
Q Consensus 361 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~-~~~~~ 429 (650)
...+..+...|++++|+..|++...... .++ ..++..+...|...|+++.|...+++..+... . ....+
T Consensus 105 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 184 (378)
T 3q15_A 105 FFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQS 184 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHH
Confidence 3455567788889999988888765311 122 34677788888888999999888887764311 1 12456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCHHH
Q 045674 430 YSSLIDGLGKAGRVDEAEELFEEMVEK----GCP-RDSYCYNVLIDALAKCGKLDEALALFKRMED-----EGCDQTVYT 499 (650)
Q Consensus 430 ~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~ 499 (650)
+..++.+|...|++++|.+.+++.++. +.+ ....++..++.+|...|++++|+..+++..+ ..+. ...+
T Consensus 185 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~ 263 (378)
T 3q15_A 185 LFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKV 263 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHH
Confidence 778888899999999999999888763 101 1235678889999999999999999998877 4333 3778
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CC-CHHHHHHHHHHHHhcCC---HHHHHHHHHHHhhCCCCcHHHHHHH
Q 045674 500 YTILINGMFKEHRNEEALKLWDMMIDKGI---TP-TAASFRALSIGLCLSGK---VARACKILDELAPKGIIPETAFEDM 572 (650)
Q Consensus 500 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~l 572 (650)
+..++.++...|++++|...++++.+... .+ ....+..+...+...|+ +.+|+.++++.. ..+.....+..+
T Consensus 264 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~-~~~~~~~~~~~l 342 (378)
T 3q15_A 264 LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN-LHAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC-ChhHHHHHHHHH
Confidence 88899999999999999999999886321 12 23345666666777788 888888887732 111245677889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHc
Q 045674 573 ITCLCKTGRIKEACKLADGIVDR 595 (650)
Q Consensus 573 ~~~~~~~g~~~~A~~~~~~~~~~ 595 (650)
+.+|...|++++|.+.++++++.
T Consensus 343 a~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999999998754
No 83
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.49 E-value=3.5e-12 Score=112.24 Aligned_cols=167 Identities=18% Similarity=0.104 Sum_probs=135.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 045674 427 AMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILING 506 (650)
Q Consensus 427 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 506 (650)
...+..++..+...|++++|...++++.+.. +.+...+..++..+...|++++|...++++.+..+. +...+..++..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD-NVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHH
Confidence 3456667777788888888888888777653 557777888888888888888888888888776433 67778888888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHH
Q 045674 507 MFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEAC 586 (650)
Q Consensus 507 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 586 (650)
+...|++++|...++++.+..+. +...+..++.++...|++++|.++++++.+..+.+..++..++.++...|++++|.
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEANPI-NFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCcH-hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 88888888888888888876443 67788888888888999999999999988887778888889999999999999999
Q ss_pred HHHHHHHHcC
Q 045674 587 KLADGIVDRE 596 (650)
Q Consensus 587 ~~~~~~~~~~ 596 (650)
+.++++++..
T Consensus 165 ~~~~~~~~~~ 174 (186)
T 3as5_A 165 PHFKKANELD 174 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHcC
Confidence 9999888764
No 84
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.48 E-value=1e-11 Score=123.03 Aligned_cols=300 Identities=13% Similarity=-0.003 Sum_probs=195.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-cC----HHHH
Q 045674 290 YMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSH----AYNLVIGGLCKVGKCIEGHAIFESMIRRGCQ-PN----VAIY 360 (650)
Q Consensus 290 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~ 360 (650)
.......+...|++++|...+++........+.. ++..+...+...|++++|...+++....... .+ ..++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3444556677888999988888877754332222 4556677788888999888888887764111 12 2235
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC----CCC--CC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----CCHHH
Q 045674 361 TALIDSYAKLGSMNEAINIFERMKYE----GVE--PD-EVTYGVIISGLCKNERLEEAMQYFEFCRANGVA----VNAMF 429 (650)
Q Consensus 361 ~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~--p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~ 429 (650)
..+...+...|++++|...+++.... +.. |. ...+..+...+...|++++|...+++....... .....
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 56777888889999998888887642 211 22 345566777788889999998888887654322 12356
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-C-HHHHH----HHHHHHHHcCCHHHHHHHHHHHHHcCCCC---CHHHH
Q 045674 430 YSSLIDGLGKAGRVDEAEELFEEMVEKGCPR-D-SYCYN----VLIDALAKCGKLDEALALFKRMEDEGCDQ---TVYTY 500 (650)
Q Consensus 430 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~-~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~ 500 (650)
+..+...+...|++++|...+++.......+ . ..... ..+..+...|++++|...+++.......+ ....+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 6777888888899999988888877641111 1 11111 23344778888988888888876643221 13345
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Q 045674 501 TILINGMFKEHRNEEALKLWDMMIDK----GITPTA-ASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITC 575 (650)
Q Consensus 501 ~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 575 (650)
..+...+...|++++|...++++... +..++. ..+..++.++...|+.++|...++++...... ......
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~-----~g~~~~ 331 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR-----TGFISH 331 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-----HCCCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc-----ccHHHH
Confidence 66777888888999988888887642 211122 25566777788888999998888888754111 112233
Q ss_pred HHHcCCHHHHHHHHHHHHHcC
Q 045674 576 LCKTGRIKEACKLADGIVDRE 596 (650)
Q Consensus 576 ~~~~g~~~~A~~~~~~~~~~~ 596 (650)
+...| +....+++.+....
T Consensus 332 ~~~~g--~~~~~ll~~~~~~~ 350 (373)
T 1hz4_A 332 FVIEG--EAMAQQLRQLIQLN 350 (373)
T ss_dssp HHTTH--HHHHHHHHHHHHTT
T ss_pred HHHcc--HHHHHHHHHHHhCC
Confidence 44444 56666777776654
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.45 E-value=1.2e-12 Score=124.05 Aligned_cols=228 Identities=15% Similarity=0.054 Sum_probs=162.0
Q ss_pred HHhcCCHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------C-CCCCHHHHHH
Q 045674 402 LCKNERLEEAMQYFEFCRAN-------GVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEK------G-CPRDSYCYNV 467 (650)
Q Consensus 402 ~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~-~~~~~~~~~~ 467 (650)
....|++++|+..+++..+. +......++..++..|...|++++|+..++++++. + .+....++..
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 90 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN 90 (283)
T ss_dssp --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 34567777787777766542 22234667888999999999999999999998864 1 1334567888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc-----CC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CC-CHH
Q 045674 468 LIDALAKCGKLDEALALFKRMEDE-----GC--DQTVYTYTILINGMFKEHRNEEALKLWDMMIDK-----GI-TP-TAA 533 (650)
Q Consensus 468 l~~~~~~~g~~~~A~~~~~~~~~~-----~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~-~p-~~~ 533 (650)
++.+|...|++++|+..++++.+. +. .....++..++..+...|++++|..+++++.+. +. .| ...
T Consensus 91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 170 (283)
T 3edt_B 91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK 170 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 999999999999999999998764 11 224667888889999999999999999998864 11 22 345
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhC---------CCCcHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHcCCC
Q 045674 534 SFRALSIGLCLSGKVARACKILDELAPK---------GIIPETAFEDMITCLCKTGR------IKEACKLADGIVDRERE 598 (650)
Q Consensus 534 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~------~~~A~~~~~~~~~~~~~ 598 (650)
++..++.++...|++++|..+++++.+. .+.....+..+.......+. +.++...++...... +
T Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 249 (283)
T 3edt_B 171 TKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDS-P 249 (283)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCC-H
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCC-H
Confidence 7788899999999999999999998864 22244555555555554443 333333333332211 2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045674 599 IPGKIRTALINALRKAGNADLAIKLMHSKIGV 630 (650)
Q Consensus 599 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 630 (650)
....++..++.+|...|++++|..+++++++.
T Consensus 250 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 250 TVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34567888999999999999999999999874
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.42 E-value=5.2e-12 Score=120.08 Aligned_cols=176 Identities=11% Similarity=0.046 Sum_probs=79.6
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHH
Q 045674 372 SMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRAN----GVAV-NAMFYSSLIDGLGKAGRVDEA 446 (650)
Q Consensus 372 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A 446 (650)
++++|...|++. ...|...|++++|...|.+.... +..+ ...+|..++.+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 366666666655 22355566666666666655432 1111 134555566666666666666
Q ss_pred HHHHHHHHHcCCC-CC----HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCC-C----HHHHHHHHHHHHhcCCHHH
Q 045674 447 EELFEEMVEKGCP-RD----SYCYNVLIDALAKC-GKLDEALALFKRMEDEGCDQ-T----VYTYTILINGMFKEHRNEE 515 (650)
Q Consensus 447 ~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~ 515 (650)
+..+++.++.... .+ ..+++.++.+|... |++++|+..|++.++..... + ..++..++..+...|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 6666655542100 01 22344444444443 55555555555444321100 0 1234444444444444444
Q ss_pred HHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 045674 516 ALKLWDMMIDKGITPTA------ASFRALSIGLCLSGKVARACKILDELAPKG 562 (650)
Q Consensus 516 A~~~~~~~~~~~~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 562 (650)
|+..|+++.+..+.... ..+..++.++...|++++|...++++++..
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 229 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSED 229 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 44444444443222111 123334444444444444444444444433
No 87
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.42 E-value=1.2e-11 Score=115.61 Aligned_cols=100 Identities=14% Similarity=0.066 Sum_probs=55.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-C-CHHHH
Q 045674 426 NAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRD---SYCYNVLIDALAKCGKLDEALALFKRMEDEGCD-Q-TVYTY 500 (650)
Q Consensus 426 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~-~~~~~ 500 (650)
+...+..++..+.+.|++++|+..|+++++.. |.+ ...+..++.+|.+.|++++|+..|+++++..+. + ....+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 34445555556666666666666666666543 333 455566666666666666666666666554321 1 13344
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHHHHC
Q 045674 501 TILINGMFK--------EHRNEEALKLWDMMIDK 526 (650)
Q Consensus 501 ~~l~~~~~~--------~~~~~~A~~~~~~~~~~ 526 (650)
..++.++.. .|++++|+..|+++++.
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 126 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR 126 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 455555555 56666666666666554
No 88
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.41 E-value=1.1e-10 Score=109.48 Aligned_cols=224 Identities=9% Similarity=-0.004 Sum_probs=171.9
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----HHc---C
Q 045674 406 ERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAG--RVDEAEELFEEMVEKGCPRDSYCYNVLIDAL----AKC---G 476 (650)
Q Consensus 406 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---g 476 (650)
...++|+..++.++..++. +..+|+.-..++...+ +++++++.++.++... |.+..+|+....++ ... +
T Consensus 47 e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 47 EYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccC
Confidence 3346788888888877666 6667777777777777 8888888888888875 66777777766666 555 6
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC------H
Q 045674 477 KLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNE--EALKLWDMMIDKGITPTAASFRALSIGLCLSGK------V 548 (650)
Q Consensus 477 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~------~ 548 (650)
++++++.+++++.+..++ +..+|+.-..++...|+++ +++++++++++.++. |...|..-..++...|+ +
T Consensus 125 ~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 125 DPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhH
Confidence 788888888888887655 7888887777777778777 888888888877666 77777777777777776 8
Q ss_pred HHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 045674 549 ARACKILDELAPKGIIPETAFEDMITCLCKTGRIKE-ACKLADGIVDRE--REIPGKIRTALINALRKAGNADLAIKLMH 625 (650)
Q Consensus 549 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 625 (650)
+++++++++++..+|.+..+|+.+..++.+.|+..+ +..+.+++.+.+ .+.++.++..++.+|.+.|+.++|++.++
T Consensus 203 ~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 203 DEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 889999999988888889999888888888887444 556777666542 13467788888888888899999999999
Q ss_pred HHHH-CCCC
Q 045674 626 SKIG-VGYD 633 (650)
Q Consensus 626 ~~~~-~~~~ 633 (650)
.+.+ .++.
T Consensus 283 ~l~~~~Dpi 291 (306)
T 3dra_A 283 LLKSKYNPI 291 (306)
T ss_dssp HHHHTTCGG
T ss_pred HHHhccChH
Confidence 9886 3554
No 89
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.40 E-value=1.7e-11 Score=114.60 Aligned_cols=208 Identities=11% Similarity=-0.036 Sum_probs=141.2
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCCHHHH
Q 045674 391 DEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVN---AMFYSSLIDGLGKAGRVDEAEELFEEMVEKG--CPRDSYCY 465 (650)
Q Consensus 391 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~ 465 (650)
+...+......+.+.|++++|+..|+.+.+..+. + ...+..++.+|...|++++|+..|+.+++.. .+.....+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 4566777777888888999999998888877554 3 5677778888888899999999988888863 11234567
Q ss_pred HHHHHHHHH--------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 045674 466 NVLIDALAK--------CGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRA 537 (650)
Q Consensus 466 ~~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ 537 (650)
..++.++.. .|++++|+..|+++++..+. +......+... ..+... ....+..
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~--------------~~~~~~----~~~~~~~ 153 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKI--------------RELRAK----LARKQYE 153 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHH--------------HHHHHH----HHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHH--------------HHHHHH----HHHHHHH
Confidence 778888888 88888999888888876443 22222221111 111100 0122556
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCC---cHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHcCCCCCH---
Q 045674 538 LSIGLCLSGKVARACKILDELAPKGII---PETAFEDMITCLCKT----------GRIKEACKLADGIVDREREIPG--- 601 (650)
Q Consensus 538 l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~--- 601 (650)
++..|...|++++|+..|+++++..|. ...++..++.++... |++++|+..|+++++.. |.+.
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~ 232 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF-PDSPLLR 232 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC-TTCTHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC-CCChHHH
Confidence 777788888888888888888877666 456777888888766 78888888888888764 4332
Q ss_pred HHHHHHHHHHHhcCCHHH
Q 045674 602 KIRTALINALRKAGNADL 619 (650)
Q Consensus 602 ~~~~~l~~~~~~~g~~~~ 619 (650)
.+...+...+...|++++
T Consensus 233 ~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 233 TAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 233444545555555444
No 90
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.39 E-value=6.2e-11 Score=107.81 Aligned_cols=190 Identities=12% Similarity=-0.026 Sum_probs=126.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--HHH
Q 045674 426 NAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRD---SYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTV--YTY 500 (650)
Q Consensus 426 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~ 500 (650)
+...+..++..+...|++++|+..|+++++.. |.+ ...+..++.+|.+.|++++|+..|+++++..+.... ..+
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~ 81 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVM 81 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHH
Confidence 34455566777888888888888888888753 222 356777888888888888888888888776543211 244
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHH-----------
Q 045674 501 TILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAF----------- 569 (650)
Q Consensus 501 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----------- 569 (650)
..++.++...+.. .+ ..+..+...+...|++++|...|+++++..|.+..++
T Consensus 82 ~~~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~ 144 (225)
T 2yhc_A 82 YMRGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKD 144 (225)
T ss_dssp HHHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHH
Confidence 4455555432210 00 0111222233345666666666666666666543222
Q ss_pred ------HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 045674 570 ------EDMITCLCKTGRIKEACKLADGIVDREREIPG---KIRTALINALRKAGNADLAIKLMHSKIGVGYDR 634 (650)
Q Consensus 570 ------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 634 (650)
..++..+...|++++|+..|+++++.. |.++ .++..++.+|.+.|++++|++.++++...++..
T Consensus 145 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 145 RLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDY-PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC-cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 457888999999999999999999875 4443 578889999999999999999999999987764
No 91
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.39 E-value=1.2e-11 Score=111.02 Aligned_cols=128 Identities=10% Similarity=-0.080 Sum_probs=84.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCC-
Q 045674 503 LINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGR- 581 (650)
Q Consensus 503 l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~- 581 (650)
++.++...|++++|+..|+++++..+. +...+..++.++...|++++|...|+++++.+|.+..++..++.++...|+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~ 138 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQ 138 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHH
Confidence 666777777777777777777766444 666777777777777777777777777777777777777777777765553
Q ss_pred -HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 045674 582 -IKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYD 633 (650)
Q Consensus 582 -~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 633 (650)
.+.+...++++... .|....+...+.++...|++++|+..|+++++..|.
T Consensus 139 ~~~~~~~~~~~~~~~--~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 139 EKKKLETDYKKLSSP--TKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHC---CC--CHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHHHHHhCC--CchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 34455555555421 222334455566667777777777777777777665
No 92
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.39 E-value=2.4e-11 Score=115.50 Aligned_cols=210 Identities=12% Similarity=0.048 Sum_probs=134.9
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCCHHHH
Q 045674 407 RLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEK----GCPR-DSYCYNVLIDALAKCGKLDEA 481 (650)
Q Consensus 407 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A 481 (650)
++++|...|+++ +..|...|++++|...|.+..+. |.++ ...+|+.++.+|.+.|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 477777777665 33466778888888777777653 2111 145677778888888888888
Q ss_pred HHHHHHHHHcCCC-CC----HHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCC-C----HHHHHHHHHHHHhcCCHHH
Q 045674 482 LALFKRMEDEGCD-QT----VYTYTILINGMFKE-HRNEEALKLWDMMIDKGITP-T----AASFRALSIGLCLSGKVAR 550 (650)
Q Consensus 482 ~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~p-~----~~~~~~l~~~~~~~g~~~~ 550 (650)
+..+++.++.... .+ ..+++.++.+|... |++++|+..|+++++..... + ..++..++..+...|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 8877777653111 01 34677777777775 88888888888777532110 1 3456777777888888888
Q ss_pred HHHHHHHHhhCCCCcH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHH--hcCC
Q 045674 551 ACKILDELAPKGIIPE-------TAFEDMITCLCKTGRIKEACKLADGIVDREREIPG-----KIRTALINALR--KAGN 616 (650)
Q Consensus 551 A~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~l~~~~~--~~g~ 616 (650)
|+.+|+++.+..+.+. ..+..++.++...|++++|+..++++++.. +... ..+..++.++. ..++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~~~l~~l~~~~~~~~~~~ 255 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSED-PNFADSRESNFLKSLIDAVNEGDSEQ 255 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----------HHHHHHHHHHHHTTCTTT
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCCCcHHHHHHHHHHHHHHcCCHHH
Confidence 8888888877665522 146677777888888888888888877653 2111 12334455553 3466
Q ss_pred HHHHHHHHHHHHHCCC
Q 045674 617 ADLAIKLMHSKIGVGY 632 (650)
Q Consensus 617 ~~~A~~~~~~~~~~~~ 632 (650)
+++|+..|+++++..+
T Consensus 256 ~~~A~~~~~~~~~l~~ 271 (292)
T 1qqe_A 256 LSEHCKEFDNFMRLDK 271 (292)
T ss_dssp HHHHHHHHTTSSCCCH
T ss_pred HHHHHHHhccCCccHH
Confidence 7777777777666544
No 93
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.37 E-value=9e-12 Score=132.98 Aligned_cols=171 Identities=15% Similarity=0.044 Sum_probs=83.2
Q ss_pred HhcCCHHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 045674 403 CKNERLEEAMQYFEFCR--------ANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAK 474 (650)
Q Consensus 403 ~~~g~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 474 (650)
...|++++|++.++++. +..+. +...+..++.++...|++++|+..|+++++.+ +.+...|..++.+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSE-SVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTT-CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccccc-chhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 34455555555555544 22222 33444445555555555555555555555443 3444455555555555
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 045674 475 CGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKI 554 (650)
Q Consensus 475 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 554 (650)
.|++++|++.|+++++..+. +...|..++.++...|++++ +..|+++++.++. +...+..++.++...|++++|++.
T Consensus 480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 55555555555555544332 34444455555555555555 5555555544332 344445555555555555555555
Q ss_pred HHHHhhCCCCcHHHHHHHHHHHHH
Q 045674 555 LDELAPKGIIPETAFEDMITCLCK 578 (650)
Q Consensus 555 ~~~~~~~~~~~~~~~~~l~~~~~~ 578 (650)
|+++++.+|.+..++..++.++..
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLS 580 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC-
T ss_pred HHhhcccCcccHHHHHHHHHHHHc
Confidence 555555544444555555555444
No 94
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.37 E-value=1.5e-12 Score=109.68 Aligned_cols=145 Identities=10% Similarity=0.002 Sum_probs=89.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 045674 469 IDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKV 548 (650)
Q Consensus 469 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 548 (650)
+.++...|++++|+..++......+. +...+..++..|...|++++|++.|+++++..+. +..++..++.++...|++
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~p~-~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSPRQ-KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSHHH-HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcChHHHHHHHHHHhcccCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCch
Confidence 34445556666666666666543211 3334455666666677777777777776665444 566666677777777777
Q ss_pred HHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 045674 549 ARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKL-ADGIVDREREIPGKIRTALINALRKAGN 616 (650)
Q Consensus 549 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 616 (650)
++|+..|+++++.+|.+..++..++.++.+.|++++|.+. ++++++.. |.++.+|......+...|+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 7777777777776666667777777777777776655443 46666665 5566666666666655553
No 95
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.36 E-value=4.7e-11 Score=98.54 Aligned_cols=132 Identities=17% Similarity=0.189 Sum_probs=94.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHH
Q 045674 499 TYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCK 578 (650)
Q Consensus 499 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 578 (650)
.|..++..+...|++++|..+++++.+.++. +...+..++..+...|++++|..+++++.+.++.+...+..++.++..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 3555666666777777777777777655333 556666677777777777777777777777666667777777777777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 045674 579 TGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGY 632 (650)
Q Consensus 579 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 632 (650)
.|++++|.++++++++.. +.+..++..++.++...|++++|...++++++..+
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 788888888887777765 55667777777777888888888888887777654
No 96
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.36 E-value=9.3e-11 Score=105.35 Aligned_cols=178 Identities=16% Similarity=0.129 Sum_probs=137.3
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----CHHHHHHHH
Q 045674 445 EAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEH----RNEEALKLW 520 (650)
Q Consensus 445 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~A~~~~ 520 (650)
+|.+.|++..+.| ++..+..+...|...+++++|+..|++..+.| +...+..|...|.. + ++++|+..|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4667777777754 67777888888888888888888888887764 56677777777766 6 788888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCC--cHHHHHHHHHHHHH----cCCHHHHHHHHH
Q 045674 521 DMMIDKGITPTAASFRALSIGLCL----SGKVARACKILDELAPKGII--PETAFEDMITCLCK----TGRIKEACKLAD 590 (650)
Q Consensus 521 ~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~----~g~~~~A~~~~~ 590 (650)
++..+.| +...+..++..|.. .+++++|.++|+++.+.++. .+..+..|+.+|.. .+++++|+++|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 8887754 56677778877776 77888888888888887763 37788888888888 778889999998
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHCCCCC
Q 045674 591 GIVDREREIPGKIRTALINALRKA-G-----NADLAIKLMHSKIGVGYDR 634 (650)
Q Consensus 591 ~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~~~~ 634 (650)
++.+. +.+...+..++..|... | ++++|+.+++++.+.|...
T Consensus 154 ~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~~ 201 (212)
T 3rjv_A 154 GSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDT 201 (212)
T ss_dssp HHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCHH
Confidence 88876 34556777788877653 3 8899999999988887653
No 97
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.34 E-value=9e-10 Score=103.32 Aligned_cols=233 Identities=11% Similarity=0.031 Sum_probs=177.9
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----HHc---C
Q 045674 371 GSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNE--RLEEAMQYFEFCRANGVAVNAMFYSSLIDGL----GKA---G 441 (650)
Q Consensus 371 ~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~ 441 (650)
...++|+.++.+++..+.. +...|+.-...+...| ++++++++++.+...+++ +..+|+.-..++ ... +
T Consensus 47 e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 47 EYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccC
Confidence 3345777777777765221 3455666666666666 888888888888877666 555555544444 444 6
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC------H
Q 045674 442 RVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLD--EALALFKRMEDEGCDQTVYTYTILINGMFKEHR------N 513 (650)
Q Consensus 442 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~ 513 (650)
++++++.+++.+.+.. +.+..+|+....++.+.|.++ ++++.++++++..+. |...|+.-...+...++ +
T Consensus 125 ~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 125 DPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhH
Confidence 7889999999998875 778888888888888888887 889999999888765 88888887777777776 8
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHhhCC---CCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 045674 514 EEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVAR-ACKILDELAPKG---IIPETAFEDMITCLCKTGRIKEACKLA 589 (650)
Q Consensus 514 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~ 589 (650)
+++++.+++++...+. |...|+.+...+.+.|+..+ +..+.+++.+.+ +.+..++..++.++.+.|+.++|++++
T Consensus 203 ~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~ 281 (306)
T 3dra_A 203 DEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY 281 (306)
T ss_dssp HHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 9999999999987666 88889888888888887444 556777777655 568889999999999999999999999
Q ss_pred HHHHHc-CCCCCHHHHHHHHH
Q 045674 590 DGIVDR-EREIPGKIRTALIN 609 (650)
Q Consensus 590 ~~~~~~-~~~~~~~~~~~l~~ 609 (650)
+.+.+. + |.....|...+.
T Consensus 282 ~~l~~~~D-pir~~yW~~~~~ 301 (306)
T 3dra_A 282 DLLKSKYN-PIRSNFWDYQIS 301 (306)
T ss_dssp HHHHHTTC-GGGHHHHHHHHH
T ss_pred HHHHhccC-hHHHHHHHHHHh
Confidence 999874 4 566667765543
No 98
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.33 E-value=3.3e-11 Score=114.03 Aligned_cols=167 Identities=15% Similarity=0.104 Sum_probs=122.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHH
Q 045674 459 PRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAAS-FRA 537 (650)
Q Consensus 459 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~-~~~ 537 (650)
+.+...+..++..+.+.|++++|+..|+++.+..+. +...+..++..+...|++++|...++++.... |+... ...
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence 445566667777777778888888888877776544 66677777777778888888888877776543 33332 223
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcC
Q 045674 538 LSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIP--GKIRTALINALRKAG 615 (650)
Q Consensus 538 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g 615 (650)
....+...++.++|...+++++...|.+..++..++.++...|++++|++.++++++.+ +.+ ..++..++.++...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~-p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXD-LTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc-cccccchHHHHHHHHHHHcC
Confidence 33345666777778888888888888888888888888888888888888888888775 333 667788888888888
Q ss_pred CHHHHHHHHHHHHH
Q 045674 616 NADLAIKLMHSKIG 629 (650)
Q Consensus 616 ~~~~A~~~~~~~~~ 629 (650)
+.++|...+++.+.
T Consensus 270 ~~~~a~~~~r~al~ 283 (287)
T 3qou_A 270 TGDALASXYRRQLY 283 (287)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 88888888877664
No 99
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.33 E-value=1.8e-11 Score=115.97 Aligned_cols=228 Identities=15% Similarity=0.108 Sum_probs=161.2
Q ss_pred HhcCCHHHHHHHHHHHHH-------CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC------C-CCCCHHHHHHH
Q 045674 368 AKLGSMNEAINIFERMKY-------EGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRAN------G-VAVNAMFYSSL 433 (650)
Q Consensus 368 ~~~~~~~~A~~~~~~~~~-------~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~-~~~~~~~~~~l 433 (650)
...|++++|+.+|++..+ ........++..+...|...|++++|+..++++.+. + ......++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 345666666666666543 221223567888999999999999999999988754 1 12245678889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHc------C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCC-CCHHH
Q 045674 434 IDGLGKAGRVDEAEELFEEMVEK------G-CPRDSYCYNVLIDALAKCGKLDEALALFKRMEDE------GCD-QTVYT 499 (650)
Q Consensus 434 ~~~~~~~~~~~~A~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~-~~~~~ 499 (650)
+.+|...|++++|...+++++.. . .+....++..++.+|...|++++|+..++++.+. +.. ....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999999875 1 1334677889999999999999999999999775 112 24567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCC-CHHHHHHHHHHHHhcCC------HHHHHHHHHHHhhCCCCc
Q 045674 500 YTILINGMFKEHRNEEALKLWDMMIDK-------GITP-TAASFRALSIGLCLSGK------VARACKILDELAPKGIIP 565 (650)
Q Consensus 500 ~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~p-~~~~~~~l~~~~~~~g~------~~~A~~~~~~~~~~~~~~ 565 (650)
+..++.++...|++++|..+++++.+. ...+ ....+..+...+...+. +.++..+++......+..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 888999999999999999999999863 1111 22234444444443333 333444443333332335
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 045674 566 ETAFEDMITCLCKTGRIKEACKLADGIVDR 595 (650)
Q Consensus 566 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 595 (650)
..++..++.++...|++++|.++++++++.
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 678899999999999999999999999864
No 100
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.33 E-value=6.6e-09 Score=105.68 Aligned_cols=125 Identities=15% Similarity=0.063 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Q 045674 498 YTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSG-KVARACKILDELAPKGIIPETAFEDMITCL 576 (650)
Q Consensus 498 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 576 (650)
..|...+....+.+..+.|..+|+++ .. ...+...|...+..-...| +.+.|..+|+.+++..+.++..+...++..
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e 364 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFL 364 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 44666666666778899999999988 32 2235555554444333344 699999999999987777777778888888
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045674 577 CKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIG 629 (650)
Q Consensus 577 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 629 (650)
...|+.+.|..+|+++. .....|...+..-...|+.+.+.++++++.+
T Consensus 365 ~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 365 LRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 88999999999999873 3567888888877888999999998888875
No 101
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.32 E-value=2e-09 Score=99.71 Aligned_cols=79 Identities=10% Similarity=0.059 Sum_probs=34.5
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 045674 376 AINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGV-AVNAMFYSSLIDGLGKAGRVDEAEELFEEMV 454 (650)
Q Consensus 376 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 454 (650)
|+..|+++...+ .++..++..+..++...|++++|++++.+.+..+. .-+...+..++.++.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344444444332 22333333444444444555555555544444332 1133344444444555555555555555444
Q ss_pred H
Q 045674 455 E 455 (650)
Q Consensus 455 ~ 455 (650)
+
T Consensus 164 ~ 164 (310)
T 3mv2_B 164 N 164 (310)
T ss_dssp H
T ss_pred h
Confidence 4
No 102
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.32 E-value=1.9e-10 Score=103.02 Aligned_cols=135 Identities=14% Similarity=0.051 Sum_probs=99.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 045674 468 LIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGK 547 (650)
Q Consensus 468 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 547 (650)
++.+|.+.|++++|+..|++.++..+. +...+..++.++...|++++|+..|+++++..+. +...+..++.+|...|+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhH
Confidence 888888899999999999988887654 7788888888888899999999999998887554 67788888888766654
Q ss_pred --HHHHHHHHHHHhhCCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 045674 548 --VARACKILDELAPKGII-PETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALI 608 (650)
Q Consensus 548 --~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 608 (650)
.+.+...++.+.. +. ....+...+.++...|++++|+..|+++++.. |+......+.
T Consensus 138 ~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~--P~~~~~~~l~ 197 (208)
T 3urz_A 138 QEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRF--PSTEAQKTLD 197 (208)
T ss_dssp HHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTS--CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCHHHHHHHH
Confidence 3445566666543 22 23355667888888899999999999998764 6655444443
No 103
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.32 E-value=5.8e-11 Score=124.69 Aligned_cols=165 Identities=12% Similarity=-0.031 Sum_probs=123.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 045674 440 AGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKL 519 (650)
Q Consensus 440 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 519 (650)
.|++++|++.++++.+.. +.+...+..++..|.+.|++++|++.+++..+..+. +...+..++.+|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478889999999888774 667888889999999999999999999999887544 678888888899999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHcC
Q 045674 520 WDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKT---GRIKEACKLADGIVDRE 596 (650)
Q Consensus 520 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~ 596 (650)
++++++..+. +...+..++.++...|++++|.+.++++.+..+.+..++..++.++... |++++|.+.++++++.+
T Consensus 80 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 80 LQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 9998886544 6778888899999999999999999999988888888889999999999 99999999999998876
Q ss_pred CCCCHHHHHHHH
Q 045674 597 REIPGKIRTALI 608 (650)
Q Consensus 597 ~~~~~~~~~~l~ 608 (650)
+.+...+..++
T Consensus 159 -p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 -VGAVEPFAFLS 169 (568)
T ss_dssp -CCCSCHHHHTT
T ss_pred -CcccChHHHhC
Confidence 55555555444
No 104
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.31 E-value=5.7e-10 Score=103.30 Aligned_cols=179 Identities=13% Similarity=0.091 Sum_probs=98.4
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 045674 411 AMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGC-PRDSYCYNVLIDALAKCGKLDEALALFKRME 489 (650)
Q Consensus 411 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 489 (650)
|+..|+++...+ .++...+..++.++...|++++|++++.+.+..+- ..+...+..++.++.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 555555555443 22344444566666666666666666666655431 1345556666666666666666666666666
Q ss_pred HcCCCC-----CHHHHHHHHHHH--HhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 045674 490 DEGCDQ-----TVYTYTILINGM--FKEH--RNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAP 560 (650)
Q Consensus 490 ~~~~~~-----~~~~~~~l~~~~--~~~~--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 560 (650)
+. .| +..+...|+.++ ...| ++.+|..+|+++.+. .|+..+...+..++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 54 23 234444444442 2223 666666666666543 23322222222256666666666666665544
Q ss_pred C----------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 045674 561 K----------GIIPETAFEDMITCLCKTGRIKEACKLADGIVDRE 596 (650)
Q Consensus 561 ~----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 596 (650)
. ++.++.++..++.+....|+ +|.++++++.+..
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 3 24456666555555555565 6666666666654
No 105
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.30 E-value=7.8e-11 Score=125.76 Aligned_cols=174 Identities=10% Similarity=-0.016 Sum_probs=144.9
Q ss_pred HhcCCHHHHHHHHHHHH--------HCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 045674 368 AKLGSMNEAINIFERMK--------YEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGK 439 (650)
Q Consensus 368 ~~~~~~~~A~~~~~~~~--------~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 439 (650)
...|++++|++.++++. +.. ..+...+..+...+...|++++|+..|+++.+.++. +...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 67899999999999988 431 224567888888999999999999999999887665 78889999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 045674 440 AGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKL 519 (650)
Q Consensus 440 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 519 (650)
.|++++|+..|+++++.. +.+...+..++.+|.+.|++++ ++.|+++++.++. +...|..++.++...|++++|+..
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999999985 6688899999999999999999 9999999987655 788899999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 045674 520 WDMMIDKGITPTAASFRALSIGLCLSGK 547 (650)
Q Consensus 520 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 547 (650)
|+++++.++. +...+..++.++...|+
T Consensus 557 ~~~al~l~P~-~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRH-FTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTT-HHHHHHHHHHHTC----
T ss_pred HHhhcccCcc-cHHHHHHHHHHHHccCC
Confidence 9998876433 45677778888766555
No 106
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.30 E-value=3e-11 Score=105.16 Aligned_cols=162 Identities=13% Similarity=0.065 Sum_probs=112.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HH
Q 045674 465 YNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIG-LC 543 (650)
Q Consensus 465 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~ 543 (650)
+..++..+.+.|++++|+..|+++.+..+. +...+..++.++...|++++|+..++++.+..+ +......++.. +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHH
Confidence 445556666777777777777776655433 566677777777777777777777777665433 44333322222 12
Q ss_pred hcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 045674 544 LSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREI-PGKIRTALINALRKAGNADLAIK 622 (650)
Q Consensus 544 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~ 622 (650)
..+...+|...++++++..|.+...+..++.++...|++++|+..|+++++.+..+ +...+..++.++...|+.++|..
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 22233457888888888888888888888888888888888888888888775211 25578888888888888888888
Q ss_pred HHHHHHH
Q 045674 623 LMHSKIG 629 (650)
Q Consensus 623 ~~~~~~~ 629 (650)
.|++++.
T Consensus 166 ~y~~al~ 172 (176)
T 2r5s_A 166 KYRRQLY 172 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888765
No 107
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.29 E-value=8.3e-12 Score=105.17 Aligned_cols=146 Identities=10% Similarity=-0.064 Sum_probs=116.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 045674 433 LIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHR 512 (650)
Q Consensus 433 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 512 (650)
|+.++...|++++|+..++...... +.+...+..++.+|.+.|++++|++.|++.++..+. +..+|..++.+|...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCc
Confidence 4455666788888888888876642 334556678888899999999999999999887655 78889999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH-HHHHHhhCCCCcHHHHHHHHHHHHHcCC
Q 045674 513 NEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACK-ILDELAPKGIIPETAFEDMITCLCKTGR 581 (650)
Q Consensus 513 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 581 (650)
+++|+..|+++++..+. +...+..++.++.+.|++++|.+ +++++++..|.++.++......+...|+
T Consensus 81 ~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 99999999999887555 67888889999999999877665 4688999888888888888888877774
No 108
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.26 E-value=4.1e-10 Score=92.81 Aligned_cols=131 Identities=16% Similarity=0.207 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 045674 464 CYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLC 543 (650)
Q Consensus 464 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 543 (650)
.+..++..+...|++++|..+++++.+..+. +...+..++..+...|++++|..+++++.+.++. +...+..++..+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHHHH
Confidence 4556666777777777777777777665433 5666667777777777777777777777765433 5666777777777
Q ss_pred hcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 045674 544 LSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDRE 596 (650)
Q Consensus 544 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 596 (650)
..|++++|.++++++.+..+.+...+..++.++...|++++|.+.++++++.+
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 88888888888888877767677777788888888888888888888877653
No 109
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.25 E-value=2.9e-10 Score=119.42 Aligned_cols=163 Identities=10% Similarity=-0.056 Sum_probs=93.8
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 045674 405 NERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALAL 484 (650)
Q Consensus 405 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 484 (650)
.|++++|++.++++.+..+. +...+..+...+...|++++|.+.+++.++.. +.+...+..++.+|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 35666677777666655443 55666666667777777777777777766654 45566666677777777777777777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHhhC
Q 045674 485 FKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLS---GKVARACKILDELAPK 561 (650)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~ 561 (650)
+++..+..+. +...+..++.++...|++++|.+.++++.+..+. +...+..++.++... |++++|.+.++++++.
T Consensus 80 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 7776665433 5666666666677777777777777776665433 455666666666666 6777777777777666
Q ss_pred CCCcHHHHHH
Q 045674 562 GIIPETAFED 571 (650)
Q Consensus 562 ~~~~~~~~~~ 571 (650)
++.+...+..
T Consensus 158 ~p~~~~~~~~ 167 (568)
T 2vsy_A 158 GVGAVEPFAF 167 (568)
T ss_dssp TCCCSCHHHH
T ss_pred CCcccChHHH
Confidence 6654444433
No 110
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.24 E-value=9.2e-10 Score=98.79 Aligned_cols=176 Identities=11% Similarity=0.027 Sum_probs=140.8
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC----CHHHHHHHH
Q 045674 410 EAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCG----KLDEALALF 485 (650)
Q Consensus 410 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~ 485 (650)
+|++.|++..+.+ +...+..+...|...+++++|+..|++..+.| +...+..|..+|.. + ++++|+..|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4677777777764 67777888888888889999999999888865 67778888888887 6 889999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 045674 486 KRMEDEGCDQTVYTYTILINGMFK----EHRNEEALKLWDMMIDKGIT-PTAASFRALSIGLCL----SGKVARACKILD 556 (650)
Q Consensus 486 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~----~g~~~~A~~~~~ 556 (650)
++..+.| +...+..|...|.. .+++++|+..|++..+.+.. .+...+..|+..|.. .+++++|..+|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 9887764 67777888887776 78999999999998876532 126778888888888 788999999999
Q ss_pred HHhhCCCCcHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHHcC
Q 045674 557 ELAPKGIIPETAFEDMITCLCKT-G-----RIKEACKLADGIVDRE 596 (650)
Q Consensus 557 ~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~ 596 (650)
++.+. +.+...+..|+.+|... | ++++|+++|+++.+.+
T Consensus 154 ~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 99887 34566788888888754 3 8999999999998876
No 111
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.24 E-value=1.1e-09 Score=99.35 Aligned_cols=186 Identities=12% Similarity=-0.014 Sum_probs=132.0
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH---HHH
Q 045674 391 DEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVN--AMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDS---YCY 465 (650)
Q Consensus 391 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~ 465 (650)
+...+..+...+...|++++|+..|+.+.+..+... ...+..++.++.+.|++++|+..|+++++.. |.+. ..+
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-P~~~~~~~a~ 81 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYVM 81 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCcHHHHH
Confidence 345566677789999999999999999998755422 4577889999999999999999999999874 3333 256
Q ss_pred HHHHHHHHH------------------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 045674 466 NVLIDALAK------------------CGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKG 527 (650)
Q Consensus 466 ~~l~~~~~~------------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 527 (650)
..++.++.+ .|++++|+..|+++++..+. +...+....... .+....
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~----------~~~~~~---- 146 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLV----------FLKDRL---- 146 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHH----------HHHHHH----
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHH----------HHHHHH----
Confidence 667777665 34556666666666554322 111111111000 000000
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 045674 528 ITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPE---TAFEDMITCLCKTGRIKEACKLADGIVDRE 596 (650)
Q Consensus 528 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 596 (650)
......++..+.+.|++++|+..|+++++..|.++ .++..++.++.+.|++++|++.++.+...+
T Consensus 147 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 ----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 01123567788999999999999999999888754 679999999999999999999999988764
No 112
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.23 E-value=2.7e-10 Score=92.33 Aligned_cols=106 Identities=11% Similarity=0.016 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 045674 533 ASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALR 612 (650)
Q Consensus 533 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 612 (650)
..+...+..+.+.|++++|++.|+++++.+|.+..+|..++.++...|++++|++.++++++.+ +.+..+|..++.+|.
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Confidence 3456667777777777777777777777777777777777777777777777777777777765 566677777777777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCChhhhh
Q 045674 613 KAGNADLAIKLMHSKIGVGYDRMGSIK 639 (650)
Q Consensus 613 ~~g~~~~A~~~~~~~~~~~~~~~~~~~ 639 (650)
..|++++|++.|+++++..|.......
T Consensus 93 ~~~~~~~A~~~~~~al~l~P~~~~a~~ 119 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDPSNEEARE 119 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCcCCHHHHH
Confidence 777777777777777777666544443
No 113
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.22 E-value=2e-11 Score=102.15 Aligned_cols=104 Identities=8% Similarity=-0.076 Sum_probs=88.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 045674 531 TAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINA 610 (650)
Q Consensus 531 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 610 (650)
+...+..++..+...|++++|...|++++..+|.+...|..++.++...|++++|++.|+++++.+ |.++.+|..++.+
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHH
Confidence 345677888888889999999999999998888888889999999999999999999999998886 7778888888999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCh
Q 045674 611 LRKAGNADLAIKLMHSKIGVGYDRM 635 (650)
Q Consensus 611 ~~~~g~~~~A~~~~~~~~~~~~~~~ 635 (650)
|...|++++|+..|+++++..+++.
T Consensus 114 ~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 9999999999999999988876543
No 114
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.22 E-value=1.4e-10 Score=100.80 Aligned_cols=161 Identities=10% Similarity=0.042 Sum_probs=124.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HH
Q 045674 430 YSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILING-MF 508 (650)
Q Consensus 430 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~ 508 (650)
+..+...+...|++++|...++++++.. |.+...+..++.++.+.|++++|+..++++....+ +...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHH
Confidence 4456677888888999988888887764 66788888888888889999999998888877643 44433333222 12
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--cHHHHHHHHHHHHHcCCHHHHH
Q 045674 509 KEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGII--PETAFEDMITCLCKTGRIKEAC 586 (650)
Q Consensus 509 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~ 586 (650)
..++..+|+..++++++..+. +...+..++.++...|++++|...|+++++..|. +..++..++.++...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 222334578888888876544 6788889999999999999999999999998876 4668899999999999999999
Q ss_pred HHHHHHHH
Q 045674 587 KLADGIVD 594 (650)
Q Consensus 587 ~~~~~~~~ 594 (650)
..|++++.
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998764
No 115
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.22 E-value=3e-10 Score=107.41 Aligned_cols=165 Identities=10% Similarity=0.050 Sum_probs=140.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH-HHH
Q 045674 426 NAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYT-ILI 504 (650)
Q Consensus 426 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~l~ 504 (650)
+...+..+...+...|++++|...|+++++.. |.+...+..++.++.+.|++++|...++++....+ +..... ...
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p--~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ--DTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC--SHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhc--chHHHHHHHH
Confidence 55667778888999999999999999999985 77889999999999999999999999999887643 443332 333
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc--HHHHHHHHHHHHHcCCH
Q 045674 505 NGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIP--ETAFEDMITCLCKTGRI 582 (650)
Q Consensus 505 ~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~ 582 (650)
..+...++.++|+..++++++..+. +...+..++..+...|++++|+..|+++++..|.+ ..++..++.++...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 3466778888899999999987655 78899999999999999999999999999988885 88999999999999999
Q ss_pred HHHHHHHHHHHH
Q 045674 583 KEACKLADGIVD 594 (650)
Q Consensus 583 ~~A~~~~~~~~~ 594 (650)
++|...|++.+.
T Consensus 272 ~~a~~~~r~al~ 283 (287)
T 3qou_A 272 DALASXYRRQLY 283 (287)
T ss_dssp CHHHHHHHHHHH
T ss_pred CcHHHHHHHHHH
Confidence 999999998764
No 116
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.20 E-value=1.1e-07 Score=96.72 Aligned_cols=125 Identities=12% Similarity=0.049 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 045674 463 YCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFK-EHRNEEALKLWDMMIDKGITPTAASFRALSIG 541 (650)
Q Consensus 463 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 541 (650)
.+|...+..+.+.++.+.|..+|+++ +. ...+...|...+..-.. .++.+.|..+|+.+++..+. +...+...+..
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~-~~~~~~~yid~ 363 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD-STLLKEEFFLF 363 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 56777777777788899999999999 32 22345555433322223 34699999999999875333 45566667777
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 045674 542 LCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVD 594 (650)
Q Consensus 542 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 594 (650)
....|+.+.|..+|+++. .....|...+..-...|+.+.+.++++++.+
T Consensus 364 e~~~~~~~~aR~l~er~~----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 364 LLRIGDEENARALFKRLE----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHTCHHHHHHHHHHSC----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 788999999999999983 3678899998888889999999999988874
No 117
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.20 E-value=5.2e-10 Score=90.65 Aligned_cols=111 Identities=13% Similarity=0.068 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Q 045674 498 YTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLC 577 (650)
Q Consensus 498 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 577 (650)
..+...+..|.+.|++++|++.|+++++..+. +...+..++.++...|++++|+..++++++.++.+..+|..++.++.
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 45666777888888888888888888876544 67788888888888888888888888888888888888888888888
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 045674 578 KTGRIKEACKLADGIVDREREIPGKIRTALINA 610 (650)
Q Consensus 578 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 610 (650)
..|++++|++.|+++++.+ |.+..++..+..+
T Consensus 93 ~~~~~~~A~~~~~~al~l~-P~~~~a~~~l~~~ 124 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVD-PSNEEAREGVRNC 124 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHC-cCCHHHHHHHHHh
Confidence 8888888888888888886 6677777666654
No 118
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.19 E-value=6.1e-09 Score=98.55 Aligned_cols=226 Identities=10% Similarity=-0.034 Sum_probs=163.3
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-C-CHHHH
Q 045674 405 NERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAG-RVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKC-G-KLDEA 481 (650)
Q Consensus 405 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~~~A 481 (650)
.+..++|+++++.++..++. +..+|+.-..++...+ .++++++.++.++... +.+..+|+....++.+. + +++++
T Consensus 67 ~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~E 144 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSE 144 (349)
T ss_dssp TCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHH
T ss_pred CCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHH
Confidence 34456788888888777666 6667777777777777 4888888888888775 67778888877777776 6 77888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC------
Q 045674 482 LALFKRMEDEGCDQTVYTYTILINGMFKEHRNE--------EALKLWDMMIDKGITPTAASFRALSIGLCLSGK------ 547 (650)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~------ 547 (650)
+++++++++..++ |..+|+.-..++...|+++ ++++.++++++..+. |...|+....++.+.++
T Consensus 145 L~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 145 IEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchH
Confidence 8888888877555 7777777666665555555 888888888887665 77788888877777776
Q ss_pred -HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHHHcC-----CCCCH
Q 045674 548 -VARACKILDELAPKGIIPETAFEDMITCLCKTGRI--------------------KEACKLADGIVDRE-----REIPG 601 (650)
Q Consensus 548 -~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~~~-----~~~~~ 601 (650)
++++++++++++...|.+..+|+.+...+.+.|+. .+..+....+.... ..+++
T Consensus 223 ~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 302 (349)
T 3q7a_A 223 SLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVP 302 (349)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcH
Confidence 68899999999988888999998888888777753 23333333333221 13567
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCh
Q 045674 602 KIRTALINALRKAGNADLAIKLMHSKIGVGYDRM 635 (650)
Q Consensus 602 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 635 (650)
.++..++..|...|+.++|.++++.+.++ ++|.
T Consensus 303 ~al~~l~d~~~~~~~~~~a~~~~~~l~~~-~dpi 335 (349)
T 3q7a_A 303 LALEYLADSFIEQNRVDDAAKVFEKLSSE-YDQM 335 (349)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCGG
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhh-hChH
Confidence 78888999999999999999999987643 4443
No 119
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.19 E-value=1.7e-08 Score=95.12 Aligned_cols=224 Identities=10% Similarity=0.010 Sum_probs=160.1
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC--C
Q 045674 410 EAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGR----------VDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCG--K 477 (650)
Q Consensus 410 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~ 477 (650)
+|+.+++.++..++. +..+|+.-..++...+. +++++.+++.++... |.+..+|+....++.+.| .
T Consensus 48 eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~ 125 (331)
T 3dss_A 48 SVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPN 125 (331)
T ss_dssp HHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCccc
Confidence 566666666665554 44444443333333222 567788888887764 678888888877777777 4
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----------
Q 045674 478 LDEALALFKRMEDEGCDQTVYTYTILINGMFKEHR-NEEALKLWDMMIDKGITPTAASFRALSIGLCLS----------- 545 (650)
Q Consensus 478 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----------- 545 (650)
+++++.+++++.+..+. |..+|+.-..++...|. ++++++.++++++..+. |...|+.....+...
T Consensus 126 ~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~ 203 (331)
T 3dss_A 126 WARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGR 203 (331)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC------C
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccc
Confidence 78888888888887655 77778777777777777 58888888888877665 777777766666554
Q ss_pred ---CCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 045674 546 ---GKVARACKILDELAPKGIIPETAFEDMITCLCKT-----------GRIKEACKLADGIVDREREIPGKIRTALINAL 611 (650)
Q Consensus 546 ---g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 611 (650)
+.++++++++.+++...|.+..+|+.+...+... +.++++++.++++++.. |.+ .|..+..++
T Consensus 204 ~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~-pd~--~w~l~~~~~ 280 (331)
T 3dss_A 204 LPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELE-PEN--KWCLLTIIL 280 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHC-TTC--HHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhC-ccc--chHHHHHHH
Confidence 4588999999999999999999998777776665 46889999999999875 444 343333322
Q ss_pred -----HhcCCHHHHHHHHHHHHHCCCCChhhhhh
Q 045674 612 -----RKAGNADLAIKLMHSKIGVGYDRMGSIKR 640 (650)
Q Consensus 612 -----~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 640 (650)
...|..+++...+.++++.+|...+....
T Consensus 281 ~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d 314 (331)
T 3dss_A 281 LMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 314 (331)
T ss_dssp HHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHHhhcccccHHHHHHHHHHHHHhCcchhhHHHH
Confidence 24678899999999999987765554443
No 120
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.18 E-value=6.6e-11 Score=99.21 Aligned_cols=101 Identities=12% Similarity=0.010 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 045674 532 AASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINAL 611 (650)
Q Consensus 532 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 611 (650)
...+..++..+...|++++|...|++++..+|.+...|..++.++...|++++|++.|+++++.+ |.+..++..++.+|
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHH
Confidence 33455556666666666666666666666666666666666666666666666666666666654 45556666666666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCC
Q 045674 612 RKAGNADLAIKLMHSKIGVGYD 633 (650)
Q Consensus 612 ~~~g~~~~A~~~~~~~~~~~~~ 633 (650)
...|++++|+..|+++++..+.
T Consensus 100 ~~~g~~~~A~~~~~~al~~~p~ 121 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQELIAN 121 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHHHHHCcC
Confidence 6666666666666666665544
No 121
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.17 E-value=1.4e-09 Score=97.96 Aligned_cols=128 Identities=14% Similarity=-0.058 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 045674 463 YCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGL 542 (650)
Q Consensus 463 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 542 (650)
..+..++..+...|++++|+..|+++. .++...+..++.++...|++++|+..++++++..+. +...+..++.++
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~lg~~~ 81 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHH
Confidence 345556666777777777777776653 346667777777777777777777777777765433 556666777777
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCcH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 045674 543 CLSGKVARACKILDELAPKGIIPE----------------TAFEDMITCLCKTGRIKEACKLADGIVDR 595 (650)
Q Consensus 543 ~~~g~~~~A~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 595 (650)
...|++++|...++++.+..+.+. .++..++.++...|++++|.+.++++++.
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 777777777777777776655544 66677777777777777777777777654
No 122
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.13 E-value=3.7e-10 Score=108.11 Aligned_cols=225 Identities=10% Similarity=-0.007 Sum_probs=162.2
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 045674 369 KLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCK-NERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAE 447 (650)
Q Consensus 369 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 447 (650)
..|++++|.+++++..+.. +. .+.. .+++++|...|..+ +..|...|++++|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~--~~---------~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL--KT---------SFMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH--CC---------CSSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc--cc---------cccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHH
Confidence 3567788888888776531 11 1222 57788888777654 45678899999999
Q ss_pred HHHHHHHHcC----CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CC--CHHHHHHHHHHHHhcCCHHHHH
Q 045674 448 ELFEEMVEKG----CP-RDSYCYNVLIDALAKCGKLDEALALFKRMEDEGC---DQ--TVYTYTILINGMFKEHRNEEAL 517 (650)
Q Consensus 448 ~~~~~~~~~~----~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~A~ 517 (650)
..|.++.+.. -+ .-..++..++.+|.+.|++++|+..|++.++... .+ ...+++.+..+|.. |++++|+
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 9999887641 00 1145788899999999999999999998876411 11 14577788888888 9999999
Q ss_pred HHHHHHHHCCCCC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC------cHHHHHHHHHHHHHcCCHHHHH
Q 045674 518 KLWDMMIDKGITP-T----AASFRALSIGLCLSGKVARACKILDELAPKGII------PETAFEDMITCLCKTGRIKEAC 586 (650)
Q Consensus 518 ~~~~~~~~~~~~p-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~ 586 (650)
..++++++..... + ..++..++.++...|++++|+..|+++++..+. ....+..++.++...|++++|+
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999988632111 1 457888999999999999999999999875332 1346777888888899999999
Q ss_pred HHHHHHHHcCCCCC--HH---HHHHHHHHHHhcCCHHHHHHH
Q 045674 587 KLADGIVDREREIP--GK---IRTALINALRKAGNADLAIKL 623 (650)
Q Consensus 587 ~~~~~~~~~~~~~~--~~---~~~~l~~~~~~~g~~~~A~~~ 623 (650)
..|++++ .. +.. .. ....++.++ ..|+.+.+..+
T Consensus 216 ~~~~~al-~~-p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 216 KCVRESY-SI-PGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHT-TS-TTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHh-CC-CCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 9999999 54 322 21 234455544 67887766663
No 123
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.12 E-value=2.9e-09 Score=91.37 Aligned_cols=131 Identities=13% Similarity=0.049 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Q 045674 497 VYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCL 576 (650)
Q Consensus 497 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 576 (650)
...+..++..+...|++++|...++++++..+. +...+..++.++...|++++|...++++.+..+.+..++..++.++
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 345666777778888888888888888876443 6778888888888899999999999998888888888888999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHHHH
Q 045674 577 CKTGRIKEACKLADGIVDREREIPGKIRTALIN--ALRKAGNADLAIKLMHSKIG 629 (650)
Q Consensus 577 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~ 629 (650)
...|++++|.+.++++++.. +.+...+..+.. .+...|++++|++.+++..+
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999999999998875 556666644444 47788999999998887655
No 124
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.12 E-value=4.8e-10 Score=105.61 Aligned_cols=197 Identities=12% Similarity=-0.007 Sum_probs=134.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 045674 426 NAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILIN 505 (650)
Q Consensus 426 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 505 (650)
+...+..++..+...|++++|+..|+++++.. +.+...+..++.+|.+.|++++|+..++++++..+. +...+..++.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 45567778888888888888988888888874 567888888888888899999999999888887544 6778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHH
Q 045674 506 GMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEA 585 (650)
Q Consensus 506 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 585 (650)
++...|++++|...|+++.+.++. +...+...++... +..++..+........+.+..+...++..+ .|++++|
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A 154 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSAL---RIAKKKRWNSIEERRIHQESELHSYLTRLI--AAERERE 154 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHH---HHHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHH
Confidence 888899999999988888764221 1001111122211 112222333333333344666666665543 6889999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCC
Q 045674 586 CKLADGIVDREREIPGKIRTALINALRKA-GNADLAIKLMHSKIGVG 631 (650)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~ 631 (650)
++.++++++.+ +.+......+...+.+. +.+++|.++|.++.+..
T Consensus 155 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~ 200 (281)
T 2c2l_A 155 LEECQRNHEGH-EDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKR 200 (281)
T ss_dssp HTTTSGGGTTT-SCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTT
T ss_pred HHHHHhhhccc-cchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 99999988764 44444445555555555 67888999998887643
No 125
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.11 E-value=1.3e-09 Score=104.35 Aligned_cols=224 Identities=13% Similarity=0.046 Sum_probs=145.8
Q ss_pred cCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 045674 335 VGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAK-LGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQ 413 (650)
Q Consensus 335 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 413 (650)
.|++++|.+++++..+.... . +.+ .+++++|...|.++ ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~-~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT-S----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-C----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccc-c----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 46677777777776654110 0 111 46677777776654 234666777777777
Q ss_pred HHHHHHHCCCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCCHHHHHH
Q 045674 414 YFEFCRANGVA-----VNAMFYSSLIDGLGKAGRVDEAEELFEEMVEK----GCPR-DSYCYNVLIDALAKCGKLDEALA 483 (650)
Q Consensus 414 ~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~ 483 (650)
.|.++...... .-..+|..+..+|...|++++|+..|++.++. |-+. ...++..++.+|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 77665543111 01346677777788888888888888877653 1011 13567778888877 99999988
Q ss_pred HHHHHHHcCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 045674 484 LFKRMEDEGCDQ-----TVYTYTILINGMFKEHRNEEALKLWDMMIDK----GITPT-AASFRALSIGLCLSGKVARACK 553 (650)
Q Consensus 484 ~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~ 553 (650)
.|++.++..... ...+++.++..|...|++++|+..|+++++. +..+. ...+..++.++...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 888876532111 1456778888899999999999999988753 11111 2356667777888899999999
Q ss_pred HHHHHhhCCCCc-----HHHHHHHHHHHHHcCCHHHHHH
Q 045674 554 ILDELAPKGIIP-----ETAFEDMITCLCKTGRIKEACK 587 (650)
Q Consensus 554 ~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~ 587 (650)
.|++++ ..+.. ...+..++.++ ..|+.+.+.+
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 999998 76641 12344555554 5677666655
No 126
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.10 E-value=5.4e-08 Score=92.09 Aligned_cols=234 Identities=9% Similarity=-0.007 Sum_probs=138.7
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-C-CHHHHH
Q 045674 371 GSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNE-RLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKA-G-RVDEAE 447 (650)
Q Consensus 371 ~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~A~ 447 (650)
+..++|+++++++...... +...|+.-...+...| .+++++.+++.+...+++ +..+|+.-..++... + ++++++
T Consensus 68 e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 68 EKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred CCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHHH
Confidence 3345566666666554211 3344554444455555 366666666666666555 555565555555554 4 566666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-------
Q 045674 448 ELFEEMVEKGCPRDSYCYNVLIDALAKCGKLD--------EALALFKRMEDEGCDQTVYTYTILINGMFKEHR------- 512 (650)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------- 512 (650)
++++.+++.. +.+..+|+....++.+.|.++ ++++.++++++..+. |...|+.....+...++
T Consensus 146 ~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~ 223 (349)
T 3q7a_A 146 EYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRS 223 (349)
T ss_dssp HHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchHH
Confidence 6666666654 556666666555555555444 667777777766554 66667666666666554
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHhhCC------CCcH
Q 045674 513 NEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKV--------------------ARACKILDELAPKG------IIPE 566 (650)
Q Consensus 513 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~~~------~~~~ 566 (650)
++++++.+++++...+. |...|..+...+.+.|+. .+..++...+.... +.+.
T Consensus 224 ~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 302 (349)
T 3q7a_A 224 LQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVP 302 (349)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcH
Confidence 56777777777765544 666666666666555543 23333333333332 3477
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 045674 567 TAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALIN 609 (650)
Q Consensus 567 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 609 (650)
.++.-++.+|...|+.++|.++++.+.+.--+.....|...+.
T Consensus 303 ~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~ 345 (349)
T 3q7a_A 303 LALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRR 345 (349)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHH
Confidence 7888899999999999999999999875532445555655443
No 127
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.09 E-value=3.9e-09 Score=96.40 Aligned_cols=192 Identities=10% Similarity=-0.057 Sum_probs=123.6
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHHc------------CCC-----
Q 045674 439 KAGRVDEAEELFEEMVEKGCPRDSYCYNVL-------IDALAKCGKLDEALALFKRMEDE------------GCD----- 494 (650)
Q Consensus 439 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~------------~~~----- 494 (650)
..++.+.|.+.|.++.+.. |.....|..+ ...+.+.++..+++..+.+.... |.-
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 4677777777777777764 5566677666 45555555555555555544431 100
Q ss_pred ---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--cHHHH
Q 045674 495 ---QTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGII--PETAF 569 (650)
Q Consensus 495 ---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~ 569 (650)
.-......+...+...|++++|.++|+.+...+ |+......++..+.+.|++++|+..|+........ ...++
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~ 174 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAG 174 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHH
Confidence 002233445566677788888888887776543 33335556666777788888888888766554211 13467
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 045674 570 EDMITCLCKTGRIKEACKLADGIVDREREI--PGKIRTALINALRKAGNADLAIKLMHSKIGVGYD 633 (650)
Q Consensus 570 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 633 (650)
..++.++...|++++|+..|+++......| ....+...+.++.+.|+.++|+..|++++...+.
T Consensus 175 ~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 175 VAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 777888888888888888888877433213 3346667777788888888888888888887776
No 128
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.09 E-value=1.9e-08 Score=95.53 Aligned_cols=164 Identities=9% Similarity=-0.033 Sum_probs=123.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHH
Q 045674 467 VLIDALAKCGKLDEALALFKRMEDEGCD-QTV----YTYTILINGMFKEHRNEEALKLWDMMIDKGIT-PT----AASFR 536 (650)
Q Consensus 467 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-p~----~~~~~ 536 (650)
..+..+...|++++|...+++..+.... ++. ..+..++..+...|++++|+..++++++.... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 3456678889999999999888774322 221 12334666666778999999999999874222 22 33688
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhh----CCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCC-CHHHH
Q 045674 537 ALSIGLCLSGKVARACKILDELAP----KGII---PETAFEDMITCLCKTGRIKEACKLADGIVDRE----REI-PGKIR 604 (650)
Q Consensus 537 ~l~~~~~~~g~~~~A~~~~~~~~~----~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~-~~~~~ 604 (650)
.++.+|...|++++|..+++++++ .... ...++..++.+|...|++++|+++++++++.. ... -..++
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 899999999999999999999884 1111 34578899999999999999999999988652 111 16788
Q ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHHC
Q 045674 605 TALINALRKAG-NADLAIKLMHSKIGV 630 (650)
Q Consensus 605 ~~l~~~~~~~g-~~~~A~~~~~~~~~~ 630 (650)
..++.+|.+.| ++++|++.++++++.
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 89999999999 579999999998874
No 129
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.08 E-value=3.2e-10 Score=94.45 Aligned_cols=99 Identities=16% Similarity=0.035 Sum_probs=56.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 045674 534 SFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRK 613 (650)
Q Consensus 534 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 613 (650)
.+..++..+...|++++|...|++++..+|.+...|..++.++...|++++|+..|+++++.+ |.++..+..++.+|..
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 344455555555666666666666555555555555556666666666666666666655554 4455555555555666
Q ss_pred cCCHHHHHHHHHHHHHCCCC
Q 045674 614 AGNADLAIKLMHSKIGVGYD 633 (650)
Q Consensus 614 ~g~~~~A~~~~~~~~~~~~~ 633 (650)
.|++++|+..++++++..+.
T Consensus 99 ~g~~~~A~~~~~~al~~~p~ 118 (142)
T 2xcb_A 99 LGDLDGAESGFYSARALAAA 118 (142)
T ss_dssp TTCHHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHhCCC
Confidence 66666666666655555443
No 130
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.08 E-value=5.3e-10 Score=93.39 Aligned_cols=104 Identities=11% Similarity=0.023 Sum_probs=92.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Q 045674 496 TVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITC 575 (650)
Q Consensus 496 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 575 (650)
+...+..++..+...|++++|+..|+++++..+. +...|..++.++...|++++|+..|+++++.+|.++.++..++.+
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHH
Confidence 4557778888899999999999999999987655 788999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 045674 576 LCKTGRIKEACKLADGIVDREREIPGK 602 (650)
Q Consensus 576 ~~~~g~~~~A~~~~~~~~~~~~~~~~~ 602 (650)
|...|++++|++.|+++++.. |+..
T Consensus 114 ~~~lg~~~eA~~~~~~al~l~--~~~~ 138 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQHS--NDEK 138 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--CCHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CCHH
Confidence 999999999999999999875 5544
No 131
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.05 E-value=1.5e-08 Score=91.13 Aligned_cols=131 Identities=9% Similarity=-0.095 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 045674 429 FYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMF 508 (650)
Q Consensus 429 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 508 (650)
.+..++..+...|++++|+..|+++. .++...+..++.+|.+.|++++|+..+++..+..+. +...+..++.++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHH
Confidence 34455666667777777777776653 346667777777777777777777777777665433 5666666777777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCC---------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 045674 509 KEHRNEEALKLWDMMIDKGITP---------------TAASFRALSIGLCLSGKVARACKILDELAPKGII 564 (650)
Q Consensus 509 ~~~~~~~A~~~~~~~~~~~~~p---------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 564 (650)
..|++++|+..|+++.+..+.. ....+..++.++...|++++|.+.++++.+..+.
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 7777777777777776653321 1155666677777777777777777777766554
No 132
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.04 E-value=4.6e-09 Score=101.63 Aligned_cols=97 Identities=10% Similarity=-0.068 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 045674 532 AASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINAL 611 (650)
Q Consensus 532 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 611 (650)
...+..++.++.+.|++++|+..++++++..|.+..++..++.++...|++++|+..|+++++.. +.+..++..++.++
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~ 274 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQ 274 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 35566666666666666666666666666666666666666777777777777777777766665 55566666666666
Q ss_pred HhcCCHHHH-HHHHHHHHH
Q 045674 612 RKAGNADLA-IKLMHSKIG 629 (650)
Q Consensus 612 ~~~g~~~~A-~~~~~~~~~ 629 (650)
...|++++| ...++++++
T Consensus 275 ~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 275 QRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 666666666 445555543
No 133
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.04 E-value=1.8e-09 Score=93.92 Aligned_cols=121 Identities=11% Similarity=0.051 Sum_probs=69.1
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCH--HH
Q 045674 474 KCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIG-LCLSGKV--AR 550 (650)
Q Consensus 474 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~--~~ 550 (650)
..|++++|+..+++..+..+. +...|..++..|...|++++|...|+++++..+. +...+..++.+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchHH
Confidence 445566666666666555332 5555666666666666666666666666654332 45555555555 5555665 66
Q ss_pred HHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 045674 551 ACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDRE 596 (650)
Q Consensus 551 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 596 (650)
|...++++++.+|.+..++..++.++...|++++|...++++++..
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 6666666666655556666666666666666666666666666554
No 134
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.03 E-value=5e-09 Score=85.92 Aligned_cols=118 Identities=10% Similarity=-0.020 Sum_probs=76.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Q 045674 496 TVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITC 575 (650)
Q Consensus 496 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 575 (650)
+...+..++..+...|++++|...++++.+..+. +...+..++.++...|++++|.++++++.+..+.+..++..++.+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 4455666666666666666666666666654333 556666666666667777777777777776666666667777777
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 045674 576 LCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAG 615 (650)
Q Consensus 576 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 615 (650)
+...|++++|++.++++++.. +.+...+..++.++...|
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 777777777777777776654 445556666666665554
No 135
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.03 E-value=1.5e-09 Score=90.90 Aligned_cols=111 Identities=14% Similarity=0.010 Sum_probs=89.7
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 045674 484 LFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGI 563 (650)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 563 (650)
.|++++...+. +...+..++..+...|++++|+..|++++...+. +...+..++.++...|++++|+..|++++..+|
T Consensus 9 ~~~~al~~~p~-~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 9 TIAMLNEISSD-TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI 86 (148)
T ss_dssp SHHHHTTCCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred hHHHHHcCCHh-hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 44555544222 4556677788888889999999999888876544 777888888888999999999999999998888
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 045674 564 IPETAFEDMITCLCKTGRIKEACKLADGIVDRE 596 (650)
Q Consensus 564 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 596 (650)
.+...+..++.++...|++++|++.|+++++..
T Consensus 87 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 87 XEPRFPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 888888899999999999999999999988764
No 136
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.03 E-value=2.7e-08 Score=94.47 Aligned_cols=165 Identities=8% Similarity=-0.017 Sum_probs=105.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CCC--HHH
Q 045674 465 YNVLIDALAKCGKLDEALALFKRMEDEGCDQT-----VYTYTILINGMFKEHRNEEALKLWDMMIDKGI---TPT--AAS 534 (650)
Q Consensus 465 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~p~--~~~ 534 (650)
+...+..+...|++++|.+.+++..+...... ...+..++..+...|++++|+..++++.+... .+. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 34445556667777777777766665432211 01233344555667778888887777764321 111 346
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHh---hCCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----C-CHH
Q 045674 535 FRALSIGLCLSGKVARACKILDELA---PKGIIP----ETAFEDMITCLCKTGRIKEACKLADGIVDRERE----I-PGK 602 (650)
Q Consensus 535 ~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~-~~~ 602 (650)
+..++..|...|++++|..+++++. +..+.+ ..++..++.+|...|++++|+++++++++.... . -..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 7777778888888888888888776 322221 257777888888888888888888887754200 0 155
Q ss_pred HHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 045674 603 IRTALINALRKAGNADLA-IKLMHSKIG 629 (650)
Q Consensus 603 ~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 629 (650)
++..++.+|.+.|++++| ...++++++
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 677788888888888888 666777665
No 137
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.03 E-value=2.6e-09 Score=86.80 Aligned_cols=98 Identities=10% Similarity=0.021 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 045674 533 ASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALR 612 (650)
Q Consensus 533 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 612 (650)
..+..++..+...|++++|+..|+++++..|.+..++..++.++...|++++|+..++++++.+ +.+..++..++.++.
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 3455566666666666666666666666666666666666666666666666666666666665 555666666666666
Q ss_pred hcCCHHHHHHHHHHHHHCC
Q 045674 613 KAGNADLAIKLMHSKIGVG 631 (650)
Q Consensus 613 ~~g~~~~A~~~~~~~~~~~ 631 (650)
..|++++|+..++++++..
T Consensus 84 ~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 84 AVKEYASALETLDAARTKD 102 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhC
Confidence 6666666666666666665
No 138
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.02 E-value=7e-09 Score=84.68 Aligned_cols=120 Identities=16% Similarity=0.047 Sum_probs=85.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Q 045674 496 TVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITC 575 (650)
Q Consensus 496 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 575 (650)
+...+..++..+...|++++|...++++.+..+. +...+..++.++...|++++|.+.++++.+..+.+...+..++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 3445566666677777777777777777665333 566677777777777777777777777777766677777777777
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 045674 576 LCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNA 617 (650)
Q Consensus 576 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 617 (650)
+...|++++|.+.++++++.. +.+...+..++.++...|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 778888888888887777765 55667777777777766654
No 139
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.01 E-value=5.9e-08 Score=92.06 Aligned_cols=162 Identities=10% Similarity=-0.012 Sum_probs=121.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC----HHHHH
Q 045674 433 LIDGLGKAGRVDEAEELFEEMVEKGCPRDSY------CYNVLIDALAKCGKLDEALALFKRMEDEGCD-QT----VYTYT 501 (650)
Q Consensus 433 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~ 501 (650)
.+..+...|++++|...+++..+.. +.+.. .+..++..+...|++++|+..++++.+.... .+ ..+++
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKE-EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 4566778888888888888887742 22221 2334667777778999999999988874222 22 34688
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH----C-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC------cHHHH
Q 045674 502 ILINGMFKEHRNEEALKLWDMMID----K-GITPT-AASFRALSIGLCLSGKVARACKILDELAPKGII------PETAF 569 (650)
Q Consensus 502 ~l~~~~~~~~~~~~A~~~~~~~~~----~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~ 569 (650)
.++.+|...|++++|+.+++++++ . +..+. ..++..++.+|...|++++|..+++++++.... -..++
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 888899999999999999999884 1 11112 236788999999999999999999998853211 36789
Q ss_pred HHHHHHHHHcCC-HHHHHHHHHHHHHc
Q 045674 570 EDMITCLCKTGR-IKEACKLADGIVDR 595 (650)
Q Consensus 570 ~~l~~~~~~~g~-~~~A~~~~~~~~~~ 595 (650)
..++.++...|+ +++|.+.+++++..
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 999999999994 79999999998753
No 140
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.00 E-value=5.6e-08 Score=91.59 Aligned_cols=193 Identities=9% Similarity=0.013 Sum_probs=164.1
Q ss_pred HHcCCHH-HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 045674 438 GKAGRVD-EAEELFEEMVEKGCPRDSYCYNVLIDALAKCGK----------LDEALALFKRMEDEGCDQTVYTYTILING 506 (650)
Q Consensus 438 ~~~~~~~-~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 506 (650)
.+.|.++ +|+..++.++..+ |.+..+|+.-..++...+. +++++.+++.++...++ +..+|+.-..+
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~wl 117 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWL 117 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 3455544 8999999999986 6778888877776665554 68899999999988665 88899888888
Q ss_pred HHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHc----
Q 045674 507 MFKEH--RNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGK-VARACKILDELAPKGIIPETAFEDMITCLCKT---- 579 (650)
Q Consensus 507 ~~~~~--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 579 (650)
+...+ .+++++.+++++++..+. |...|..-.+++...|. +++++++++++++.+|.+..+|+..+.++...
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC
T ss_pred HhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcc
Confidence 88888 489999999999988766 88899988888989998 69999999999999999999999999888876
Q ss_pred ----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHCCCCC
Q 045674 580 ----------GRIKEACKLADGIVDREREIPGKIRTALINALRKA-----------GNADLAIKLMHSKIGVGYDR 634 (650)
Q Consensus 580 ----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~~~~ 634 (650)
+.++++++.+++++..+ |.|..+|+.+...+.+. +.++++++.++++++..|+.
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~ 271 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN 271 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred ccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc
Confidence 56899999999999987 88999998877777666 56899999999999988865
No 141
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.00 E-value=1.9e-08 Score=86.21 Aligned_cols=130 Identities=9% Similarity=-0.027 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 045674 463 YCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGL 542 (650)
Q Consensus 463 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 542 (650)
..+..++..+...|++++|...|++..+..+. +...+..++.++...|++++|...++++++..+. +...+..++.++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 45666777777888888888888888776443 6777778888888888888888888888876443 677788888888
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCcHHHHHHHH--HHHHHcCCHHHHHHHHHHHHH
Q 045674 543 CLSGKVARACKILDELAPKGIIPETAFEDMI--TCLCKTGRIKEACKLADGIVD 594 (650)
Q Consensus 543 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~~ 594 (650)
...|++++|...++++.+..+.+...+..+. ..+...|++++|++.+++...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 8888888888888888888777766664444 447778888888888877653
No 142
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.00 E-value=1.8e-08 Score=81.35 Aligned_cols=115 Identities=16% Similarity=0.169 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Q 045674 497 VYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCL 576 (650)
Q Consensus 497 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 576 (650)
...+..++..+...|++++|..+++++.+..+. +...+..++..+...|++++|..+++++.+..+.+...+..++.++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 344555555555566666666666655544322 4455555566666666666666666666655555555666666666
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 045674 577 CKTGRIKEACKLADGIVDREREIPGKIRTALINALRK 613 (650)
Q Consensus 577 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 613 (650)
...|++++|...++++++.. +.+...+..++.++..
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHh
Confidence 66666666666666666554 4455555555555443
No 143
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.00 E-value=2.7e-09 Score=86.63 Aligned_cols=102 Identities=14% Similarity=0.114 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-------HHHHH
Q 045674 533 ASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIP-------GKIRT 605 (650)
Q Consensus 533 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-------~~~~~ 605 (650)
..+..++..+.+.|++++|+..|+++++.+|.+..+|..++.+|...|++++|++.++++++.+ +.+ ..++.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVG-RETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhC-cccchhhHHHHHHHH
Confidence 3456677777888888888888888887777777788888888888888888888888877653 111 23566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCh
Q 045674 606 ALINALRKAGNADLAIKLMHSKIGVGYDRM 635 (650)
Q Consensus 606 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 635 (650)
.++.++...|++++|++.|+++++..+.|+
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~~~~~~ 117 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSEFRDPE 117 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSCCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcCHH
Confidence 677777888888888888888887665544
No 144
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.99 E-value=9.1e-10 Score=97.81 Aligned_cols=135 Identities=13% Similarity=-0.006 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 045674 497 VYTYTILINGMFKEHRNEEALKLWDMMIDKGITPT---------------AASFRALSIGLCLSGKVARACKILDELAPK 561 (650)
Q Consensus 497 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 561 (650)
...+..++..+...|++++|+..|+++++...... ...+..++.++...|++++|+..++++++.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 33455556666666777777777776665432211 267778888888999999999999999988
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHCCC
Q 045674 562 GIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAI-KLMHSKIGVGY 632 (650)
Q Consensus 562 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~ 632 (650)
.+.+..++..++.++...|++++|++.|+++++.. +.+..++..+..++...|+.+++. ..+..+..++.
T Consensus 118 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~~ 188 (198)
T 2fbn_A 118 DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKGP 188 (198)
T ss_dssp STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC--------------
T ss_pred CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 88888899999999999999999999999998886 667888888888888888887777 56666665543
No 145
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.97 E-value=5e-09 Score=84.12 Aligned_cols=98 Identities=11% Similarity=-0.003 Sum_probs=81.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 045674 535 FRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKA 614 (650)
Q Consensus 535 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 614 (650)
+..++..+.+.|++++|+..++++++..|.+..++..++.++...|++++|+..++++++.+ |.+..++..++.+|...
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 45667778888999999999999998888888888899999999999999999999998886 66788888889999999
Q ss_pred CCHHHHHHHHHHHHHCCCC
Q 045674 615 GNADLAIKLMHSKIGVGYD 633 (650)
Q Consensus 615 g~~~~A~~~~~~~~~~~~~ 633 (650)
|++++|+..++++++..+.
T Consensus 99 g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHC----
T ss_pred CCHHHHHHHHHHHHHhCcC
Confidence 9999999999998887664
No 146
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.97 E-value=2.7e-09 Score=88.79 Aligned_cols=105 Identities=13% Similarity=-0.025 Sum_probs=86.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Q 045674 496 TVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITC 575 (650)
Q Consensus 496 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 575 (650)
+...+..++..+...|++++|+..|++++...+. +...+..++.++...|++++|+..|++++..+|.++..+..++.+
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 3455666777788889999999999888876554 777888888889999999999999999998888888888899999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 045674 576 LCKTGRIKEACKLADGIVDREREIPGK 602 (650)
Q Consensus 576 ~~~~g~~~~A~~~~~~~~~~~~~~~~~ 602 (650)
+...|++++|++.|+++++.. +.++.
T Consensus 96 ~~~~g~~~~A~~~~~~al~~~-p~~~~ 121 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARALA-AAQPA 121 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH-HTCGG
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCcc
Confidence 999999999999999988775 33433
No 147
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.96 E-value=7.9e-09 Score=88.44 Aligned_cols=107 Identities=10% Similarity=0.013 Sum_probs=86.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Q 045674 496 TVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITC 575 (650)
Q Consensus 496 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 575 (650)
+...+..++..+...|++++|+..|+++++..+. +...+..++.++...|++++|+..++++++.++.+..++..++.+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 4567777888888888888888888888876544 677888888888888888888888888888888888888888888
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 045674 576 LCKTGRIKEACKLADGIVDREREIPGKIR 604 (650)
Q Consensus 576 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 604 (650)
+...|++++|++.|+++++.. +.+...+
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~ 116 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAE-GNGGSDA 116 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH-SSSCCHH
T ss_pred HHHccCHHHHHHHHHHHHHhC-CCchHHH
Confidence 888888888888888888775 4444433
No 148
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.96 E-value=2.6e-08 Score=91.00 Aligned_cols=198 Identities=11% Similarity=-0.071 Sum_probs=136.2
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHHc------------CCC-----
Q 045674 404 KNERLEEAMQYFEFCRANGVAVNAMFYSSL-------IDGLGKAGRVDEAEELFEEMVEK------------GCP----- 459 (650)
Q Consensus 404 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~A~~~~~~~~~~------------~~~----- 459 (650)
..++...|.+.|.++....+. ....|..+ ...+...++..+++..+...++. |..
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 467777788888777777665 55666655 45555555555555555554441 100
Q ss_pred ---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHH
Q 045674 460 ---RDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPT--AAS 534 (650)
Q Consensus 460 ---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~--~~~ 534 (650)
.-......++..+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ...
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a 173 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAA 173 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHH
Confidence 002344556777888899999998888887654 333356666677888999999999888665431 111 346
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCC--CC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 045674 535 FRALSIGLCLSGKVARACKILDELAPKG--II-PETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTAL 607 (650)
Q Consensus 535 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 607 (650)
+..++.++...|++++|+..|+++.... |. ..+.....+.++.+.|+.++|..+|+++...+ |+..++..|
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~--P~~~~~~aL 247 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH--PEPKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--CCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHHHHHHH
Confidence 7788888999999999999999987543 33 55678888999999999999999999998875 345555444
No 149
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.95 E-value=4.4e-09 Score=98.94 Aligned_cols=196 Identities=11% Similarity=0.025 Sum_probs=134.7
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 045674 391 DEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLID 470 (650)
Q Consensus 391 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 470 (650)
+...+..+...+...|++++|+..|+.+....+. +...|..++.+|...|++++|+..++++++.. +.+...+..++.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3456666777788888888888888888776554 77788888888888888999988888888874 667888888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 045674 471 ALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVAR 550 (650)
Q Consensus 471 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 550 (650)
+|...|++++|+..|+++.+..+. +...+...+....+ ..++. .+..........+......+... ..|++++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~ 153 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALR---IAKKK-RWNSIEERRIHQESELHSYLTRL--IAAERER 153 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHH---HHHHH-HHHHHHHTCCCCCCHHHHHHHHH--HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHH---HHHHH-HHHHHHHHHHhhhHHHHHHHHHH--HHHHHHH
Confidence 899999999999988888764321 10011111111111 11111 12222233344455554444433 3689999
Q ss_pred HHHHHHHHhhCCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHc
Q 045674 551 ACKILDELAPKGIIPETAFEDMITCLCKT-GRIKEACKLADGIVDR 595 (650)
Q Consensus 551 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~ 595 (650)
|++.++++.+..+.+......+...+.+. +.+++|.++|+++.+.
T Consensus 154 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 154 ELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 99999999998887777777777777666 6789999999988753
No 150
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.95 E-value=1.1e-08 Score=91.10 Aligned_cols=155 Identities=10% Similarity=-0.075 Sum_probs=74.5
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCHH
Q 045674 475 CGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDK----GIT-PTAASFRALSIGLCLSGKVA 549 (650)
Q Consensus 475 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~-p~~~~~~~l~~~~~~~g~~~ 549 (650)
.|++++|.+.++.+... +......+..+...+...|++++|...++++.+. +.. .....+..++..+...|+++
T Consensus 5 ~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 5 AHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp --CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred cccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 44555555533332221 1123444455555555555555555555554431 111 12234455555555666666
Q ss_pred HHHHHHHHHhhC---CC-C---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCH
Q 045674 550 RACKILDELAPK---GI-I---PETAFEDMITCLCKTGRIKEACKLADGIVDRER-EIP----GKIRTALINALRKAGNA 617 (650)
Q Consensus 550 ~A~~~~~~~~~~---~~-~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~ 617 (650)
+|.+.++++.+. .. . ...++..++.++...|++++|.+.++++++... ..+ ..++..++.++...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 666666555542 11 1 123455566666666666666666666553210 011 12335556666666666
Q ss_pred HHHHHHHHHHHHC
Q 045674 618 DLAIKLMHSKIGV 630 (650)
Q Consensus 618 ~~A~~~~~~~~~~ 630 (650)
++|+..++++++.
T Consensus 164 ~~A~~~~~~al~~ 176 (203)
T 3gw4_A 164 LEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666665553
No 151
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.94 E-value=2.2e-08 Score=79.86 Aligned_cols=103 Identities=13% Similarity=0.021 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 045674 533 ASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALR 612 (650)
Q Consensus 533 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 612 (650)
..+..++..+...|++++|...++++....+.+...+..++.++...|++++|...++++++.. +.+...+..++.++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 3444555555556666666666666655555555556666666666666666666666665554 445555555666666
Q ss_pred hcCCHHHHHHHHHHHHHCCCCChh
Q 045674 613 KAGNADLAIKLMHSKIGVGYDRMG 636 (650)
Q Consensus 613 ~~g~~~~A~~~~~~~~~~~~~~~~ 636 (650)
..|++++|++.++++++.++....
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~ 107 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQ 107 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHH
Confidence 666666666666666655554433
No 152
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.94 E-value=9.8e-09 Score=89.19 Aligned_cols=123 Identities=9% Similarity=0.017 Sum_probs=70.9
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHH-HHHcCCH--HHH
Q 045674 509 KEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITC-LCKTGRI--KEA 585 (650)
Q Consensus 509 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~~A 585 (650)
..|++++|...+++.++..+. +...+..++.++...|++++|...|+++.+..+.+..++..++.+ +...|++ ++|
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp -----CCCCHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred hccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 345566666666665554332 455566666666666666666666666666555555666666666 5556665 666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 045674 586 CKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYD 633 (650)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 633 (650)
+..++++++.+ +.+..++..++.+|...|++++|+..++++++..+.
T Consensus 101 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 147 (177)
T 2e2e_A 101 RAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLNSP 147 (177)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Confidence 66666666554 445555666666666666666666666666665554
No 153
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.91 E-value=3.1e-08 Score=95.79 Aligned_cols=133 Identities=12% Similarity=0.010 Sum_probs=102.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045674 461 DSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQT--------------VYTYTILINGMFKEHRNEEALKLWDMMIDK 526 (650)
Q Consensus 461 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 526 (650)
+...+..++..|.+.|++++|+..|++.++..+... ...|..++.+|...|++++|+..++++++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344555566666666666666666666665533311 567888888888899999999999998886
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHH-HHHHHHHHH
Q 045674 527 GITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEA-CKLADGIVD 594 (650)
Q Consensus 527 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 594 (650)
.+. +...+..++.+|...|++++|+..|+++++..|.+..++..++.++...|++++| ..+|+++..
T Consensus 226 ~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 226 DSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544 7788888899999999999999999999988888888999999999999998888 456666654
No 154
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.91 E-value=6.7e-08 Score=77.91 Aligned_cols=117 Identities=16% Similarity=0.181 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 045674 462 SYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIG 541 (650)
Q Consensus 462 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 541 (650)
...+..++..+...|++++|.+.++++.+..+ .+...+..++..+...|++++|..+++++.+..+. +...+..++.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHH
Confidence 45666677777777777777777777776543 25666777777777777777777777777765433 56677777777
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcC
Q 045674 542 LCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTG 580 (650)
Q Consensus 542 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 580 (650)
+...|++++|..+++++.+..+.+...+..++.++...|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 888888888888888887777777777777777665543
No 155
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.91 E-value=2.5e-08 Score=81.64 Aligned_cols=121 Identities=12% Similarity=0.020 Sum_probs=93.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 045674 459 PRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRAL 538 (650)
Q Consensus 459 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l 538 (650)
+.+...+..++..+.+.|++++|...|++..+..+. +...+..++.++...|++++|+..++++.+..+. +...+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHH
Confidence 345567777788888888888888888888776433 6777777888888888888888888888875443 67778888
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCC
Q 045674 539 SIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGR 581 (650)
Q Consensus 539 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 581 (650)
+.++...|++++|.+.++++.+..+.+...+..++.++...|+
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 8888888888888888888888777777778888887776654
No 156
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.90 E-value=5.1e-08 Score=77.74 Aligned_cols=112 Identities=13% Similarity=0.034 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Q 045674 497 VYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCL 576 (650)
Q Consensus 497 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 576 (650)
...+..++..+...|++++|...++++.+..+. +...+..++.++...|++++|...++++.+..+.+...+..++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 445666677777777888888777777765433 5667777777777888888888888888877777777888888888
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 045674 577 CKTGRIKEACKLADGIVDREREIPGKIRTALINA 610 (650)
Q Consensus 577 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 610 (650)
...|++++|.+.++++++.+ +.+...+..+..+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 115 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHE-ANNPQLKEGLQNM 115 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHh
Confidence 88888888888888887765 5556666555543
No 157
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.90 E-value=2.5e-07 Score=87.74 Aligned_cols=164 Identities=9% Similarity=0.003 Sum_probs=115.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CC--HH
Q 045674 430 YSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDS------YCYNVLIDALAKCGKLDEALALFKRMEDEGCD---QT--VY 498 (650)
Q Consensus 430 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~--~~ 498 (650)
+...+..+...|++++|.+.+.+..+.. +... ..+..++..+...|++++|+..+++..+.... +. ..
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKE-EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTC-CCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccc-cCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3445566677777777777777776643 1221 22344566677778888888888887753211 12 45
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCC-C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC------cH
Q 045674 499 TYTILINGMFKEHRNEEALKLWDMMID---KGIT-P--TAASFRALSIGLCLSGKVARACKILDELAPKGII------PE 566 (650)
Q Consensus 499 ~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~-p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~ 566 (650)
+|+.++..|...|++++|...++++.+ .... + ...++..++.+|...|++++|..+++++++.... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 788888888888999999988888872 2111 1 1257788888999999999999999988753211 26
Q ss_pred HHHHHHHHHHHHcCCHHHH-HHHHHHHHH
Q 045674 567 TAFEDMITCLCKTGRIKEA-CKLADGIVD 594 (650)
Q Consensus 567 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 594 (650)
.++..++.++...|++++| ...+++++.
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 7788899999999999999 777888764
No 158
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.90 E-value=2.2e-08 Score=82.57 Aligned_cols=99 Identities=11% Similarity=-0.032 Sum_probs=48.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Q 045674 496 TVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITC 575 (650)
Q Consensus 496 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 575 (650)
+...+..++..+...|++++|...|+++++..+. +...+..++.++...|++++|...++++++.++.+..++..++.+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 3444444455555555555555555555443322 344444455555555555555555555554444444455555555
Q ss_pred HHHcCCHHHHHHHHHHHHHc
Q 045674 576 LCKTGRIKEACKLADGIVDR 595 (650)
Q Consensus 576 ~~~~g~~~~A~~~~~~~~~~ 595 (650)
+...|++++|+..|+++++.
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 55555555555555554443
No 159
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.90 E-value=4.1e-08 Score=79.98 Aligned_cols=120 Identities=9% Similarity=-0.006 Sum_probs=89.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 045674 461 DSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSI 540 (650)
Q Consensus 461 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 540 (650)
+...+..++..+...|++++|...++++.+..+. +...+..++.++...|++++|...++++.+..+. +...+..++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHH
Confidence 4456667777777778888888888777766433 6677777777777888888888888887765433 5667777888
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCH
Q 045674 541 GLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRI 582 (650)
Q Consensus 541 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 582 (650)
++...|++++|...++++.+..+.+...+..++.++...|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 888888888888888888887777777888888887777653
No 160
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.88 E-value=3.1e-08 Score=84.72 Aligned_cols=104 Identities=8% Similarity=-0.080 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 045674 462 SYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIG 541 (650)
Q Consensus 462 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 541 (650)
...+..++..+.+.|++++|+..|++.++..+. +...|..++.+|...|++++|+..++++++..+. +...+..++.+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 344555555555555555555555555554332 4555555555555555555555555555554333 44555555555
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCcHH
Q 045674 542 LCLSGKVARACKILDELAPKGIIPET 567 (650)
Q Consensus 542 ~~~~g~~~~A~~~~~~~~~~~~~~~~ 567 (650)
+...|++++|...|+++++..+.+..
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchH
Confidence 55555555555555555555554333
No 161
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.88 E-value=3.5e-08 Score=79.94 Aligned_cols=108 Identities=12% Similarity=0.057 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc-------HHHH
Q 045674 497 VYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIP-------ETAF 569 (650)
Q Consensus 497 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~ 569 (650)
..++..++..+.+.|++++|+..|+++++..+. +...+..++.+|...|++++|++.++++++.++.. ..++
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 345667777888888888888888888876544 67778888888888888888888888887654431 3467
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 045674 570 EDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTAL 607 (650)
Q Consensus 570 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 607 (650)
..++.++...|++++|++.|+++++. .|++.....+
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~l 122 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKKV 122 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHHH
Confidence 78899999999999999999999876 4666655444
No 162
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.87 E-value=1.3e-08 Score=80.40 Aligned_cols=102 Identities=12% Similarity=-0.007 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHH
Q 045674 532 AASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREI--PGKIRTALIN 609 (650)
Q Consensus 532 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~ 609 (650)
...+..++..+...|++++|...++++.+..+.+..++..++.++...|++++|++.++++++.. +. +..++..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKAD 84 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHH
Confidence 34566677778888888888888888888777778888888888888888888888888888775 55 6778888888
Q ss_pred HHHhc-CCHHHHHHHHHHHHHCCCCC
Q 045674 610 ALRKA-GNADLAIKLMHSKIGVGYDR 634 (650)
Q Consensus 610 ~~~~~-g~~~~A~~~~~~~~~~~~~~ 634 (650)
++... |++++|++.++++++..+.+
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 88888 88888888888888877654
No 163
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.87 E-value=7e-09 Score=85.27 Aligned_cols=102 Identities=15% Similarity=0.076 Sum_probs=69.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-------cH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------
Q 045674 535 FRALSIGLCLSGKVARACKILDELAPKGII-------PE-----TAFEDMITCLCKTGRIKEACKLADGIVDR------- 595 (650)
Q Consensus 535 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-------~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------- 595 (650)
+...+..+...|++++|+..|+++++..|. +. .+|..++.++.+.|++++|+..++++++.
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 344455555566666666666666655444 22 27777777888888888888888877776
Q ss_pred CCCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCChhh
Q 045674 596 EREIPGKIR----TALINALRKAGNADLAIKLMHSKIGVGYDRMGS 637 (650)
Q Consensus 596 ~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 637 (650)
+ |.+...| ...+.++...|++++|+..|+++++..+...+.
T Consensus 94 ~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 94 N-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp T-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred C-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 5 5566677 777888888888888888888888765554333
No 164
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.86 E-value=5.9e-08 Score=78.62 Aligned_cols=97 Identities=13% Similarity=0.034 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Q 045674 498 YTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLC 577 (650)
Q Consensus 498 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 577 (650)
..|..++..+...|++++|+..|+++++..+. +...+..++.++...|++++|+..++++++.+|.+...+..++.++.
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 44555666666777777777777777665433 56667777777777777777777777777777777777777777777
Q ss_pred HcCCHHHHHHHHHHHHHc
Q 045674 578 KTGRIKEACKLADGIVDR 595 (650)
Q Consensus 578 ~~g~~~~A~~~~~~~~~~ 595 (650)
..|++++|++.|+++++.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 777777777777777665
No 165
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.85 E-value=4.5e-08 Score=80.68 Aligned_cols=102 Identities=12% Similarity=0.087 Sum_probs=81.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 045674 531 TAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINA 610 (650)
Q Consensus 531 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 610 (650)
+...+..++..+...|++++|...|++++...+.+..++..++.++...|++++|+..++++++.+ +.+..++..++.+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 86 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 86 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHHH
Confidence 566777788888888888888888888888777778888888888888888888888888888776 6677788888888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCC
Q 045674 611 LRKAGNADLAIKLMHSKIGVGYD 633 (650)
Q Consensus 611 ~~~~g~~~~A~~~~~~~~~~~~~ 633 (650)
|...|++++|+..++++++..+.
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHChh
Confidence 88888888888888888876554
No 166
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.84 E-value=4.4e-08 Score=79.77 Aligned_cols=92 Identities=10% Similarity=0.055 Sum_probs=43.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc---HHHHHHHHHHH
Q 045674 503 LINGMFKEHRNEEALKLWDMMIDKGITPTA---ASFRALSIGLCLSGKVARACKILDELAPKGIIP---ETAFEDMITCL 576 (650)
Q Consensus 503 l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~ 576 (650)
++..+...|++++|...|+++++..+. +. ..+..++.++...|++++|...++++++..|.+ ..++..++.++
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 334444455555555555555443222 11 234444444555555555555555555444443 44444455555
Q ss_pred HHcCCHHHHHHHHHHHHHc
Q 045674 577 CKTGRIKEACKLADGIVDR 595 (650)
Q Consensus 577 ~~~g~~~~A~~~~~~~~~~ 595 (650)
...|++++|+..++++++.
T Consensus 87 ~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 5555555555555555444
No 167
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.84 E-value=5.9e-08 Score=86.33 Aligned_cols=156 Identities=15% Similarity=-0.018 Sum_probs=92.3
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHhcCCH
Q 045674 439 KAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDE----GC-DQTVYTYTILINGMFKEHRN 513 (650)
Q Consensus 439 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~ 513 (650)
..|++++|.++++.+... ......++..++..+...|++++|...+++..+. +. .....++..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 355666666644333221 1234455666666666666666666666665541 11 11234566666677777777
Q ss_pred HHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCC--cHHHHHHHHHHHHHcCC
Q 045674 514 EEALKLWDMMIDK----GITP--TAASFRALSIGLCLSGKVARACKILDELAPK----GII--PETAFEDMITCLCKTGR 581 (650)
Q Consensus 514 ~~A~~~~~~~~~~----~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~--~~~~~~~l~~~~~~~g~ 581 (650)
++|...+++..+. +..+ ....+..++..+...|++++|...++++.+. +.. ...++..++.++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 7777777766642 1111 1234666777777788888888888777642 111 12345778888888888
Q ss_pred HHHHHHHHHHHHHc
Q 045674 582 IKEACKLADGIVDR 595 (650)
Q Consensus 582 ~~~A~~~~~~~~~~ 595 (650)
+++|.+.++++++.
T Consensus 163 ~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 163 LLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888877654
No 168
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=9.5e-08 Score=79.85 Aligned_cols=98 Identities=18% Similarity=0.022 Sum_probs=46.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHH
Q 045674 496 TVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPT----AASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFED 571 (650)
Q Consensus 496 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 571 (650)
+...+..++..+...|++++|...|+++.+. .|+ ...+..++.++...|++++|...++++.+..+.+...+..
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 3444444444445555555555555554443 222 3344444444444555555555555544444444444444
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Q 045674 572 MITCLCKTGRIKEACKLADGIVDR 595 (650)
Q Consensus 572 l~~~~~~~g~~~~A~~~~~~~~~~ 595 (650)
++.++...|++++|.+.|+++++.
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Confidence 455555555555555555544444
No 169
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.83 E-value=3.1e-08 Score=84.45 Aligned_cols=100 Identities=13% Similarity=0.071 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--------CC--------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 045674 497 VYTYTILINGMFKEHRNEEALKLWDMMIDK--------GI--------TP-TAASFRALSIGLCLSGKVARACKILDELA 559 (650)
Q Consensus 497 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~--------~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 559 (650)
...+...+..+.+.|++++|+..|+++++. .+ .| +...+..++.++.+.|++++|+..+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345555666666666777776666666653 00 00 12345555555555566666666666655
Q ss_pred hCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 045674 560 PKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDRE 596 (650)
Q Consensus 560 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 596 (650)
+.+|.+..++..++.++...|++++|+..|+++++.+
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 5555555555555666666666666666666555553
No 170
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.83 E-value=7.8e-09 Score=91.71 Aligned_cols=155 Identities=12% Similarity=0.045 Sum_probs=102.7
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---------------HHHHHH
Q 045674 438 GKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQT---------------VYTYTI 502 (650)
Q Consensus 438 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---------------~~~~~~ 502 (650)
...|+++++.+.++...... ......+..++..+...|++++|+..|++.++...... ...+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (198)
T 2fbn_A 15 ENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLN 93 (198)
T ss_dssp -------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHH
Confidence 33444555544443222210 12334456666667777777777777777766432211 267888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCH
Q 045674 503 LINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRI 582 (650)
Q Consensus 503 l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 582 (650)
++.++...|++++|+..++++++..+. +...+..++.++...|++++|.+.|+++++..|.+..++..++.++...|+.
T Consensus 94 la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 172 (198)
T 2fbn_A 94 LATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEA 172 (198)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHH
Confidence 888899999999999999999886443 7788889999999999999999999999998888999999999999888888
Q ss_pred HHHH-HHHHHHHH
Q 045674 583 KEAC-KLADGIVD 594 (650)
Q Consensus 583 ~~A~-~~~~~~~~ 594 (650)
+++. ..+..+..
T Consensus 173 ~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 173 RKKDKLTFGGMFD 185 (198)
T ss_dssp HC-----------
T ss_pred HHHHHHHHHHHhc
Confidence 7776 55555543
No 171
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.81 E-value=3.6e-07 Score=94.45 Aligned_cols=174 Identities=10% Similarity=0.013 Sum_probs=149.3
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 045674 442 RVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGK----------LDEALALFKRMEDEGCDQTVYTYTILINGMFKEH 511 (650)
Q Consensus 442 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 511 (650)
.-++|++.++.++... |.+..+|+....++...|+ ++++++.++++.+..++ +..+|+.-..++.+.+
T Consensus 44 ~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcc
Confidence 3467788888888875 6778888888888887777 89999999999988766 8888888888888888
Q ss_pred --CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHc---------
Q 045674 512 --RNEEALKLWDMMIDKGITPTAASFRALSIGLCLSG-KVARACKILDELAPKGIIPETAFEDMITCLCKT--------- 579 (650)
Q Consensus 512 --~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------- 579 (650)
+++++++.++++++..+. +..+|..-.+++.+.| .+++++++++++++.++.+..+|...+.++...
T Consensus 122 ~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 122 EPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred cccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccc
Confidence 779999999999987666 8888988888888888 899999999999999999999999999888874
Q ss_pred -----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 045674 580 -----GRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADL 619 (650)
Q Consensus 580 -----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 619 (650)
+.+++|++++++++..+ |.+..+|..+...+.+.+++++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 56899999999999987 7889999999999888887555
No 172
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.79 E-value=1.6e-07 Score=78.41 Aligned_cols=111 Identities=14% Similarity=0.065 Sum_probs=86.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 045674 531 TAASFRALSIGLCLSGKVARACKILDELAPKGIIP---ETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTAL 607 (650)
Q Consensus 531 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 607 (650)
+...+..++..+...|++++|.+.|+++.+..+.+ ..++..++.++...|++++|++.++++++.. +.+..++..+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ 105 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYRR 105 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHHH
Confidence 56677778888888888888888888888877765 6777888888888888888888888888775 5567778888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCChhhhhhhh
Q 045674 608 INALRKAGNADLAIKLMHSKIGVGYDRMGSIKRRV 642 (650)
Q Consensus 608 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 642 (650)
+.++...|++++|+..++++++..+........+.
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 140 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALR 140 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 88888888888888888888887776555444433
No 173
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.77 E-value=6e-08 Score=77.74 Aligned_cols=96 Identities=11% Similarity=-0.027 Sum_probs=80.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHc
Q 045674 500 YTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKT 579 (650)
Q Consensus 500 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 579 (650)
+..++..+...|++++|+..++++++..+. +...+..++.++...|++++|+..++++++.+|.+..++..++.++...
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 445667778889999999999988876554 7778888888899999999999999999988888888889999999999
Q ss_pred CCHHHHHHHHHHHHHcC
Q 045674 580 GRIKEACKLADGIVDRE 596 (650)
Q Consensus 580 g~~~~A~~~~~~~~~~~ 596 (650)
|++++|+..++++++.+
T Consensus 99 g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999988654
No 174
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.75 E-value=8.9e-08 Score=96.84 Aligned_cols=143 Identities=12% Similarity=0.025 Sum_probs=83.0
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--------------HHHHHHHHHHH
Q 045674 442 RVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQT--------------VYTYTILINGM 507 (650)
Q Consensus 442 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~l~~~~ 507 (650)
++++|...|+...+.. +.....+..++..|.+.|++++|+..|+++++..+... ...|..+..+|
T Consensus 249 ~~~~A~~~~~~~~~~~-~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 327 (457)
T 1kt0_A 249 SFEKAKESWEMDTKEK-LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCY 327 (457)
T ss_dssp EEECCCCGGGSCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhcCHHHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 3444544444333321 23566778888888889999999999888887533311 35555555555
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHH
Q 045674 508 FKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEAC 586 (650)
Q Consensus 508 ~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 586 (650)
.+.|++++|+..++++++..+. +...+..++.+|...|++++|+..|+++++..|.+..++..++.++...|++++|.
T Consensus 328 ~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 328 LKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666665554333 45555555555666666666666666666555555555555555555555555544
No 175
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.74 E-value=9.3e-08 Score=77.85 Aligned_cols=110 Identities=14% Similarity=0.110 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc-------HHHHH
Q 045674 498 YTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIP-------ETAFE 570 (650)
Q Consensus 498 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~~ 570 (650)
..+..++..+...|++++|...++++.+..+. +...+..++.++...|++++|..+++++.+..+.+ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 34555555666666666666666666654322 45555566666666666666666666665543332 45555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 045674 571 DMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINA 610 (650)
Q Consensus 571 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 610 (650)
.++.++...|++++|.+.++++++.. |+...+..+..+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~ 121 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHHH
Confidence 66666666666666666666666543 344444444433
No 176
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.72 E-value=4.1e-07 Score=73.87 Aligned_cols=103 Identities=11% Similarity=-0.099 Sum_probs=78.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHH
Q 045674 535 FRALSIGLCLSGKVARACKILDELAPKGIIPE---TAFEDMITCLCKTGRIKEACKLADGIVDREREIP---GKIRTALI 608 (650)
Q Consensus 535 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~ 608 (650)
+..++..+...|++++|...++++.+..|.+. .++..++.++...|++++|+..++++++.. +.+ ..++..++
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la 83 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHH
Confidence 34566677788888888888888887766655 677788888888888888888888888765 444 66677788
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCChhhh
Q 045674 609 NALRKAGNADLAIKLMHSKIGVGYDRMGSI 638 (650)
Q Consensus 609 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 638 (650)
.++...|++++|+..++++++..+......
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 113 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQYPGSDAAR 113 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTSHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCChHHH
Confidence 888888888888888888888776654433
No 177
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.71 E-value=1.3e-07 Score=77.02 Aligned_cols=100 Identities=12% Similarity=0.050 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-------HHHHH
Q 045674 533 ASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIP-------GKIRT 605 (650)
Q Consensus 533 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-------~~~~~ 605 (650)
..+..++..+...|++++|..+++++.+..+.+..++..++.++...|++++|...++++++.. +.+ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG-RENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc-cccchhHHHHHHHHH
Confidence 4456666677777777777777777777666667777777777777777777777777776653 222 55666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 045674 606 ALINALRKAGNADLAIKLMHSKIGVGYD 633 (650)
Q Consensus 606 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 633 (650)
.++.++...|++++|++.++++++..+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~~ 111 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHRT 111 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 7777777777777777777777776553
No 178
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.71 E-value=1.5e-07 Score=91.92 Aligned_cols=141 Identities=8% Similarity=-0.091 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 045674 462 SYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIG 541 (650)
Q Consensus 462 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 541 (650)
...+..++..+.+.|++++|+..|+++++.- +.. ......++ ..+.. ..+...+..++.+
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~----------~~~~~~~~-------~~~~~-~~~~~~~~nla~~ 282 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS----------RAAAEDAD-------GAKLQ-PVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------HHHSCHHH-------HGGGH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC----------ccccChHH-------HHHHH-HHHHHHHHHHHHH
Confidence 4567778888888888888888888877630 000 00111111 11111 1145678888899
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 045674 542 LCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAI 621 (650)
Q Consensus 542 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 621 (650)
+.+.|++++|++.++++++..+.+..++..++.+|...|++++|++.|+++++.. +.+..++..+..++...++.+++.
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888889999999999999999999999999999886 667888888888888888887775
Q ss_pred HH
Q 045674 622 KL 623 (650)
Q Consensus 622 ~~ 623 (650)
+.
T Consensus 362 k~ 363 (370)
T 1ihg_A 362 KA 363 (370)
T ss_dssp HC
T ss_pred HH
Confidence 43
No 179
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.70 E-value=9.5e-08 Score=81.41 Aligned_cols=96 Identities=16% Similarity=0.087 Sum_probs=48.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhC------------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 045674 537 ALSIGLCLSGKVARACKILDELAPK------------------GIIPETAFEDMITCLCKTGRIKEACKLADGIVDRERE 598 (650)
Q Consensus 537 ~l~~~~~~~g~~~~A~~~~~~~~~~------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 598 (650)
..+..+.+.|++++|+..|++++.. .+....++..++.++.+.|++++|+..++++++.+ +
T Consensus 16 ~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p 94 (162)
T 3rkv_A 16 QKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE-E 94 (162)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-T
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-C
Confidence 3444455555555555555555543 22233455555555555555555555555555544 4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 045674 599 IPGKIRTALINALRKAGNADLAIKLMHSKIGVGYD 633 (650)
Q Consensus 599 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 633 (650)
.+..+|..++.+|...|++++|+..++++++..+.
T Consensus 95 ~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~ 129 (162)
T 3rkv_A 95 TNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA 129 (162)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC
Confidence 44455555555555555555555555555555444
No 180
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.69 E-value=2.5e-08 Score=79.55 Aligned_cols=87 Identities=15% Similarity=0.128 Sum_probs=46.0
Q ss_pred cCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 045674 510 EHRNEEALKLWDMMIDKGI--TPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACK 587 (650)
Q Consensus 510 ~~~~~~A~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 587 (650)
.|++++|+..|+++++.+. +.+...+..++.++...|++++|+..++++++.+|.+..++..++.++...|++++|++
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 3555556666666555421 11234455555555556666666666666655555555555556666666666666666
Q ss_pred HHHHHHHcC
Q 045674 588 LADGIVDRE 596 (650)
Q Consensus 588 ~~~~~~~~~ 596 (650)
.++++++..
T Consensus 83 ~~~~al~~~ 91 (117)
T 3k9i_A 83 LLLKIIAET 91 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhC
Confidence 665555543
No 181
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.69 E-value=9e-07 Score=91.46 Aligned_cols=162 Identities=8% Similarity=-0.034 Sum_probs=142.1
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 045674 477 KLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHR----------NEEALKLWDMMIDKGITPTAASFRALSIGLCLSG 546 (650)
Q Consensus 477 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 546 (650)
..++|++.+++++..++. +..+|+.-..++...|+ ++++++.++++++..++ +..+|..-.+++.+.|
T Consensus 44 ~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcc
Confidence 346889999999998765 77888887777777777 99999999999988776 8889999999999999
Q ss_pred --CHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---------
Q 045674 547 --KVARACKILDELAPKGIIPETAFEDMITCLCKTG-RIKEACKLADGIVDREREIPGKIRTALINALRKA--------- 614 (650)
Q Consensus 547 --~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------- 614 (650)
++++++++++++.+.++.+..+|..-+.++...| .++++++.++++++.+ +.+..+|...+.++.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 122 EPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred cccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccccc
Confidence 7799999999999999999999999999999999 8999999999999987 77899999998888774
Q ss_pred -----CCHHHHHHHHHHHHHCCCCC-hhhhhhh
Q 045674 615 -----GNADLAIKLMHSKIGVGYDR-MGSIKRR 641 (650)
Q Consensus 615 -----g~~~~A~~~~~~~~~~~~~~-~~~~~~~ 641 (650)
+.+++|++.++++++..|.. ..+.|..
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~ 233 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDPNDQSAWFYHR 233 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHhhCCCCccHHHHHH
Confidence 56899999999999999984 4444443
No 182
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.69 E-value=3.3e-08 Score=100.45 Aligned_cols=118 Identities=13% Similarity=0.059 Sum_probs=75.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHH
Q 045674 506 GMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEA 585 (650)
Q Consensus 506 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 585 (650)
.+...|++++|++.++++++..+. +...+..++.++.+.|++++|++.++++++..+.+..++..++.++...|++++|
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 345566777777777776665333 4666667777777777777777777777777666677777777777777777777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 045674 586 CKLADGIVDREREIPGKIRTALINA--LRKAGNADLAIKLMH 625 (650)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 625 (650)
++.++++++.. +.+..++..++.+ +.+.|++++|++.++
T Consensus 94 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 77777777664 4455555555555 666677777777766
No 183
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.68 E-value=1.4e-07 Score=74.36 Aligned_cols=99 Identities=10% Similarity=-0.025 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--cHHHHHHHHH
Q 045674 497 VYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGII--PETAFEDMIT 574 (650)
Q Consensus 497 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~ 574 (650)
...+..++..+...|++++|...++++.+..+. +...+..++.++...|++++|...++++.+..+. +..++..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 345566667777777888888888777765433 5667777788888888888888888888887777 7788888888
Q ss_pred HHHHc-CCHHHHHHHHHHHHHcC
Q 045674 575 CLCKT-GRIKEACKLADGIVDRE 596 (650)
Q Consensus 575 ~~~~~-g~~~~A~~~~~~~~~~~ 596 (650)
++... |++++|++.++++++..
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcc
Confidence 88888 88888888888887764
No 184
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.65 E-value=5e-08 Score=94.35 Aligned_cols=154 Identities=9% Similarity=-0.065 Sum_probs=90.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 045674 461 DSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSI 540 (650)
Q Consensus 461 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 540 (650)
....+..++..+.+.|++++|+..|++.++.. |+... +...++.+++...+. ...+..++.
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~ 238 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHH
Confidence 35567778888888899999999998888752 33221 223344444433221 136788899
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCHHH
Q 045674 541 GLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINA-LRKAGNADL 619 (650)
Q Consensus 541 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~ 619 (650)
++.+.|++++|+..++++++.++.+..++..++.+|...|++++|+..|+++++.. +.+..++..+... ....+..++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988899999999999999999999999999999876 5667777777776 345677889
Q ss_pred HHHHHHHHHHCCCCC
Q 045674 620 AIKLMHSKIGVGYDR 634 (650)
Q Consensus 620 A~~~~~~~~~~~~~~ 634 (650)
+...|+++++..+..
T Consensus 318 a~~~~~~~l~~~p~~ 332 (338)
T 2if4_A 318 QKEMYKGIFKGKDEG 332 (338)
T ss_dssp ---------------
T ss_pred HHHHHHHhhCCCCCC
Confidence 999999999887654
No 185
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.64 E-value=1.7e-07 Score=79.74 Aligned_cols=132 Identities=11% Similarity=0.049 Sum_probs=81.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC------cHH
Q 045674 499 TYTILINGMFKEHRNEEALKLWDMMIDKGIT-PT----AASFRALSIGLCLSGKVARACKILDELAPKGII------PET 567 (650)
Q Consensus 499 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~ 567 (650)
++..++..+...|++++|...++++.+.... ++ ..++..++..+...|++++|.++++++.+.... ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3444555555555555555555555432100 01 134556666677777777777777776643211 244
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--C---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045674 568 AFEDMITCLCKTGRIKEACKLADGIVDRER--E---IPGKIRTALINALRKAGNADLAIKLMHSKIGV 630 (650)
Q Consensus 568 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 630 (650)
++..++.++...|++++|.+.++++++... . ....++..++..+...|++++|++.++++++.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 567778888888888888888887765410 0 11345677788888888888888888887764
No 186
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.62 E-value=5.3e-08 Score=77.64 Aligned_cols=92 Identities=14% Similarity=0.105 Sum_probs=73.1
Q ss_pred hcCCHHHHHHHHHHHhhCC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 045674 544 LSGKVARACKILDELAPKG---IIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLA 620 (650)
Q Consensus 544 ~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 620 (650)
..|++++|+..|+++++.+ +.+..++..++.++...|++++|++.++++++.. |.+..++..++.++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 3578888899999988874 4467788888999999999999999999988886 66788888888889999999999
Q ss_pred HHHHHHHHHCCCCChh
Q 045674 621 IKLMHSKIGVGYDRMG 636 (650)
Q Consensus 621 ~~~~~~~~~~~~~~~~ 636 (650)
+..++++++..+....
T Consensus 81 ~~~~~~al~~~p~~~~ 96 (117)
T 3k9i_A 81 VELLLKIIAETSDDET 96 (117)
T ss_dssp HHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHhCCCcHH
Confidence 9999998888776443
No 187
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.62 E-value=5.3e-07 Score=91.16 Aligned_cols=150 Identities=11% Similarity=0.002 Sum_probs=108.4
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---------------HHHHHHHHH
Q 045674 406 ERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRD---------------SYCYNVLID 470 (650)
Q Consensus 406 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---------------~~~~~~l~~ 470 (650)
+++++|+..|+......+. ....+..+...+.+.|++++|+..|+++++.. +.+ ..+|..++.
T Consensus 248 ~~~~~A~~~~~~~~~~~~~-~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~ 325 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEKLE-QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAM 325 (457)
T ss_dssp EEEECCCCGGGSCHHHHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHHHHH-HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHH
Confidence 3444555444333322211 45667778888888999999999999888863 333 578888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 045674 471 ALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVAR 550 (650)
Q Consensus 471 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 550 (650)
+|.+.|++++|+..++++++..+. +...|..++.+|...|++++|+..|+++++..+. +...+..++.++.+.|++++
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~ 403 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNE 403 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999988887554 7888888888889999999999999998876443 55677788888888888877
Q ss_pred HHH-HHHHHh
Q 045674 551 ACK-ILDELA 559 (650)
Q Consensus 551 A~~-~~~~~~ 559 (650)
|.+ .+..+.
T Consensus 404 a~~~~~~~~f 413 (457)
T 1kt0_A 404 RDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHHHH
Confidence 764 444444
No 188
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.60 E-value=2.6e-06 Score=85.88 Aligned_cols=96 Identities=5% Similarity=-0.095 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhC--CCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCC----H
Q 045674 534 SFRALSIGLCLSGKVARACKILDELAPK--GII----PETAFEDMITCLCKTGRIKEACKLADGIVDRE--REIP----G 601 (650)
Q Consensus 534 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~----~ 601 (650)
++..++..+...|++++|..+++++... +.. ...++..++.+|...|++++|..++++++... .+.+ .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 4444555555555555555555554421 000 23445555555555555555555555544321 0111 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045674 602 KIRTALINALRKAGNADLAIKLMHSKIG 629 (650)
Q Consensus 602 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 629 (650)
..+..++..+...|++++|...+.++++
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 2333444444555555555555555443
No 189
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.59 E-value=6.8e-07 Score=73.46 Aligned_cols=97 Identities=13% Similarity=-0.056 Sum_probs=74.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC------CH-----HHHHHHHHHHHhcCCHHHHHHHHHHHhhC-------
Q 045674 500 YTILINGMFKEHRNEEALKLWDMMIDKGITP------TA-----ASFRALSIGLCLSGKVARACKILDELAPK------- 561 (650)
Q Consensus 500 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p------~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------- 561 (650)
+...+..+...|++++|+..|+++++..+.. +. ..|..++.++...|++++|+..++++++.
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 3444555566666666666666666543221 22 37788888888888888888888888888
Q ss_pred CCCcHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 045674 562 GIIPETAF----EDMITCLCKTGRIKEACKLADGIVDRE 596 (650)
Q Consensus 562 ~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~ 596 (650)
+|.+...| ...+.++...|++++|+..|+++++..
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~ 132 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI 132 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 88888899 999999999999999999999999874
No 190
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.57 E-value=3.3e-07 Score=93.07 Aligned_cols=117 Identities=11% Similarity=0.038 Sum_probs=59.9
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 045674 472 LAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARA 551 (650)
Q Consensus 472 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 551 (650)
+.+.|++++|++.++++++..+. +...|..++.+|...|++++|+..++++++..+. +...+..++.+|...|++++|
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHH
Confidence 44455555555555555554322 4555555555555555555555555555554332 444555555555555555555
Q ss_pred HHHHHHHhhCCCCcHHHHHHHHHH--HHHcCCHHHHHHHHH
Q 045674 552 CKILDELAPKGIIPETAFEDMITC--LCKTGRIKEACKLAD 590 (650)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 590 (650)
.+.++++++..+.+..++..++.+ +.+.|++++|++.++
T Consensus 94 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 555555555555544455545444 555555555555555
No 191
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.54 E-value=1.4e-07 Score=77.25 Aligned_cols=87 Identities=10% Similarity=-0.063 Sum_probs=52.1
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH----------HHHHHHHHHHhhCCCCcHHHHHHHHHHHHH
Q 045674 509 KEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKV----------ARACKILDELAPKGIIPETAFEDMITCLCK 578 (650)
Q Consensus 509 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 578 (650)
+.+++++|++.+++.++..+. +...+..++.++...|++ ++|+..|+++++.+|....+|..++.+|..
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 445566666666666665444 556666666666655543 366666666666666666666666666665
Q ss_pred cC-----------CHHHHHHHHHHHHHcC
Q 045674 579 TG-----------RIKEACKLADGIVDRE 596 (650)
Q Consensus 579 ~g-----------~~~~A~~~~~~~~~~~ 596 (650)
.| ++++|++.|+++++.+
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 53 5666666666666553
No 192
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.54 E-value=8.6e-07 Score=86.58 Aligned_cols=142 Identities=8% Similarity=-0.079 Sum_probs=107.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 045674 426 NAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILIN 505 (650)
Q Consensus 426 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 505 (650)
....+..+...+.+.|++++|+..|+++++.. +.. ...... +...+.. ..+...|..+..
T Consensus 222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~----------~~~~~~-------~~~~~~~-~~~~~~~~nla~ 281 (370)
T 1ihg_A 222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS----------RAAAED-------ADGAKLQ-PVALSCVLNIGA 281 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------HHHSCH-------HHHGGGH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC----------ccccCh-------HHHHHHH-HHHHHHHHHHHH
Confidence 35568888999999999999999999988731 100 001111 1111111 114567788888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHH
Q 045674 506 GMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEA 585 (650)
Q Consensus 506 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 585 (650)
+|.+.|++++|+..++++++..+. +...+..++.+|...|++++|++.|+++.+..|.+..++..+..++...++.+++
T Consensus 282 ~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 282 CKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999886544 6778888999999999999999999999998888888888899888888888777
Q ss_pred HHH
Q 045674 586 CKL 588 (650)
Q Consensus 586 ~~~ 588 (650)
.+.
T Consensus 361 ~k~ 363 (370)
T 1ihg_A 361 EKA 363 (370)
T ss_dssp HHC
T ss_pred HHH
Confidence 653
No 193
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.50 E-value=7.7e-07 Score=75.48 Aligned_cols=132 Identities=13% Similarity=0.012 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HH
Q 045674 464 CYNVLIDALAKCGKLDEALALFKRMEDEGCD-QT----VYTYTILINGMFKEHRNEEALKLWDMMIDKGIT-PT----AA 533 (650)
Q Consensus 464 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-p~----~~ 533 (650)
++..++..|...|++++|+..+++..+.... .+ ..++..++..+...|++++|...++++.+.... .+ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4455555666666666666666655442110 01 135566666777777777777777776642100 11 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCC----CC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 045674 534 SFRALSIGLCLSGKVARACKILDELAPKG----II--PETAFEDMITCLCKTGRIKEACKLADGIVDR 595 (650)
Q Consensus 534 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 595 (650)
.+..++.++...|++++|.++++++.+.. .. ....+..++.++...|++++|.+.++++++.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 56677788888888888888888877431 11 2456778899999999999999999988764
No 194
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.50 E-value=3.5e-06 Score=69.08 Aligned_cols=113 Identities=9% Similarity=-0.011 Sum_probs=84.8
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHH----cCCHHHHH
Q 045674 511 HRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCK----TGRIKEAC 586 (650)
Q Consensus 511 ~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~ 586 (650)
+++++|+..|++..+.|. ++.. ++..|...+.+++|.++|+++.+.+ +......|+.+|.. .+++++|.
T Consensus 9 ~d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g--~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELN--SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred cCHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCC--CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 466778888888877762 2333 6666777777788888888887763 67777788888877 77888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC
Q 045674 587 KLADGIVDREREIPGKIRTALINALRK----AGNADLAIKLMHSKIGVGYD 633 (650)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~ 633 (650)
++|+++.+.+ ++..+..++..|.. .+++++|+++++++.+.|..
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~ 129 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 129 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCH
Confidence 8888888764 56677778888887 78888888888888887653
No 195
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.45 E-value=1.5e-05 Score=80.26 Aligned_cols=199 Identities=12% Similarity=-0.015 Sum_probs=124.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC----------------HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 045674 363 LIDSYAKLGSMNEAINIFERMKYEGVEPD----------------EVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVN 426 (650)
Q Consensus 363 l~~~~~~~~~~~~A~~~~~~~~~~~~~p~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 426 (650)
-+..+.+.|++++|++.|.++.+...... ...+..++..|...|++++|.+.+..+........
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 35567788999999999988887532211 12356677778888888888888876654321111
Q ss_pred -H----HHHHHHHHHHHHcCCHHHHHHHHHHHHHc----C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCC
Q 045674 427 -A----MFYSSLIDGLGKAGRVDEAEELFEEMVEK----G-CPRDSYCYNVLIDALAKCGKLDEALALFKRMEDE--GCD 494 (650)
Q Consensus 427 -~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~ 494 (650)
. .+.+.+...+...|++++|..+++..... + ...-..++..++..|...|++++|..+++++... +..
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 1 12333334444567788888887776542 1 1122456677777888888888888887776543 111
Q ss_pred ---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC-CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 045674 495 ---QTVYTYTILINGMFKEHRNEEALKLWDMMIDK--GI-TPT---AASFRALSIGLCLSGKVARACKILDELAPK 561 (650)
Q Consensus 495 ---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~-~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 561 (650)
....++..++..|...|++++|..++++.... .+ .|. ...+..++..+...|++++|...+.++.+.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 12346667777777888888888887776631 11 111 234455566666777888888777777653
No 196
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.44 E-value=1.3e-07 Score=74.53 Aligned_cols=94 Identities=14% Similarity=0.137 Sum_probs=71.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC------HHHH
Q 045674 531 TAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIP------GKIR 604 (650)
Q Consensus 531 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~ 604 (650)
+...+..++..+...|++++|.+.++++++..|.+..++..++.++...|++++|++.++++++.. +.+ ..++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-STAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SSTTSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCccHHHHHHHHH
Confidence 455677778888888888888888888888878888888888888888888888888888888765 444 5566
Q ss_pred HHHHHHHHhcCCHHHHHHHHH
Q 045674 605 TALINALRKAGNADLAIKLMH 625 (650)
Q Consensus 605 ~~l~~~~~~~g~~~~A~~~~~ 625 (650)
..++.++...|++++|+..++
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHhHhhhHhHHH
Confidence 666777776666665554443
No 197
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.44 E-value=4.9e-07 Score=87.36 Aligned_cols=151 Identities=12% Similarity=0.069 Sum_probs=90.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 045674 426 NAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILIN 505 (650)
Q Consensus 426 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 505 (650)
....+..+...+.+.|++++|+..|++++... |+... +...|+++++...+. ...|..+..
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~ 238 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHH
Confidence 35567788888999999999999999998863 43321 223344444443321 136788889
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHH-HHcCCHHH
Q 045674 506 GMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCL-CKTGRIKE 584 (650)
Q Consensus 506 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~ 584 (650)
+|.+.|++++|+..++++++..+. +...+..++.+|...|++++|...|+++++..|.+..++..+..+. ...+..++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999986544 7888999999999999999999999999999888888888888774 45567888
Q ss_pred HHHHHHHHHHcC
Q 045674 585 ACKLADGIVDRE 596 (650)
Q Consensus 585 A~~~~~~~~~~~ 596 (650)
+.++|++++...
T Consensus 318 a~~~~~~~l~~~ 329 (338)
T 2if4_A 318 QKEMYKGIFKGK 329 (338)
T ss_dssp ------------
T ss_pred HHHHHHHhhCCC
Confidence 899999998764
No 198
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.38 E-value=1.1e-06 Score=72.16 Aligned_cols=95 Identities=11% Similarity=-0.010 Sum_probs=77.6
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 045674 543 CLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRI----------KEACKLADGIVDREREIPGKIRTALINALR 612 (650)
Q Consensus 543 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 612 (650)
.+.+.+++|++.++++++.+|.+.+.|..++.++...|++ ++|+..|+++++.+ |.+..+|..++.+|.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHH
Confidence 4557788889999999888888888888888888888764 58999999998887 677888888888888
Q ss_pred hcC-----------CHHHHHHHHHHHHHCCCCChhhh
Q 045674 613 KAG-----------NADLAIKLMHSKIGVGYDRMGSI 638 (650)
Q Consensus 613 ~~g-----------~~~~A~~~~~~~~~~~~~~~~~~ 638 (650)
..| ++++|++.|+++++..+......
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~ 128 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYL 128 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHH
Confidence 774 88999999999998877754433
No 199
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.38 E-value=3.6e-06 Score=66.57 Aligned_cols=80 Identities=11% Similarity=-0.036 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 045674 515 EALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVD 594 (650)
Q Consensus 515 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 594 (650)
+|+..++++++..+. +...+..++.++...|++++|+..++++++.++.+...+..++.++...|++++|+..|+++++
T Consensus 3 ~a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 355666666655433 5566666666677777777777777777766666666666677777777777777777776665
Q ss_pred c
Q 045674 595 R 595 (650)
Q Consensus 595 ~ 595 (650)
.
T Consensus 82 ~ 82 (115)
T 2kat_A 82 A 82 (115)
T ss_dssp H
T ss_pred h
Confidence 4
No 200
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.37 E-value=3.9e-06 Score=62.92 Aligned_cols=83 Identities=17% Similarity=0.157 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 045674 532 AASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINAL 611 (650)
Q Consensus 532 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 611 (650)
...+..++..+...|++++|..+++++++..+.+..++..++.++...|++++|++.++++++.. +.+..++..++.++
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 44566677777778888888888888877777777777788888888888888888888887765 55677777777766
Q ss_pred HhcC
Q 045674 612 RKAG 615 (650)
Q Consensus 612 ~~~g 615 (650)
...|
T Consensus 88 ~~~g 91 (91)
T 1na3_A 88 QKQG 91 (91)
T ss_dssp HHHC
T ss_pred HhcC
Confidence 6543
No 201
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.31 E-value=6.1e-06 Score=65.21 Aligned_cols=82 Identities=11% Similarity=0.007 Sum_probs=62.0
Q ss_pred HHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045674 550 RACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIG 629 (650)
Q Consensus 550 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 629 (650)
+|+..|+++++..|.+...+..++.++...|++++|+..++++++.+ +.+...|..++.+|...|++++|+..++++++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 46677777777777777777777888888888888888888777765 55677777777777778888888888877777
Q ss_pred CCC
Q 045674 630 VGY 632 (650)
Q Consensus 630 ~~~ 632 (650)
..+
T Consensus 82 ~~~ 84 (115)
T 2kat_A 82 AAQ 84 (115)
T ss_dssp HHH
T ss_pred hcc
Confidence 644
No 202
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.23 E-value=9.6e-07 Score=69.34 Aligned_cols=95 Identities=13% Similarity=0.093 Sum_probs=69.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc------HHHH
Q 045674 496 TVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIP------ETAF 569 (650)
Q Consensus 496 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~ 569 (650)
+...+..++..+...|++++|+..|+++++..+. +...+..++.++...|++++|++.++++++..+.+ ..++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 4456667777777788888888888887775443 66777778888888888888888888888777765 6667
Q ss_pred HHHHHHHHHcCCHHHHHHHHHH
Q 045674 570 EDMITCLCKTGRIKEACKLADG 591 (650)
Q Consensus 570 ~~l~~~~~~~g~~~~A~~~~~~ 591 (650)
..++.++...|++++|++.+++
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHhHhhhHhHHHH
Confidence 7777777777776666555443
No 203
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.22 E-value=1.4e-05 Score=80.44 Aligned_cols=95 Identities=7% Similarity=-0.122 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhh-----CCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCC
Q 045674 534 SFRALSIGLCLSGKVARACKILDELAP-----KGIIP---ETAFEDMITCLCKTGRIKEACKLADGIVDR-----EREIP 600 (650)
Q Consensus 534 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~ 600 (650)
+++.++.+|...|++++|..+++++++ .|+.. ...++.|+.+|...|++++|+.+++++++. | +..
T Consensus 353 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG-~~H 431 (490)
T 3n71_A 353 LLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHG-PSH 431 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-TTS
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC-CCC
Confidence 445555555555555555555555442 23332 234555555556666666665555555432 2 122
Q ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045674 601 ---GKIRTALINALRKAGNADLAIKLMHSKIG 629 (650)
Q Consensus 601 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 629 (650)
..+...+..++...|++++|...|+++.+
T Consensus 432 p~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 432 PITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12333455555555666666666665554
No 204
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.21 E-value=6e-05 Score=61.60 Aligned_cols=111 Identities=8% Similarity=-0.052 Sum_probs=75.4
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHH
Q 045674 476 GKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCL----SGKVARA 551 (650)
Q Consensus 476 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A 551 (650)
+++++|++.|++..+.|. ++.. |...|...+..++|++.|++..+.| +......++..|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 356667777777766652 2332 5555556666677777777777653 55666677777766 6777777
Q ss_pred HHHHHHHhhCCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcC
Q 045674 552 CKILDELAPKGIIPETAFEDMITCLCK----TGRIKEACKLADGIVDRE 596 (650)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 596 (650)
.++|+++.+.+ ++.....|+.+|.. .+++++|.++|+++.+.+
T Consensus 81 ~~~~~~Aa~~g--~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC--CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 77777777653 56677777777777 777888888888777765
No 205
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.19 E-value=9.8e-06 Score=62.03 Aligned_cols=65 Identities=12% Similarity=0.032 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 045674 531 TAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDR 595 (650)
Q Consensus 531 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 595 (650)
+...+..++.++...|++++|++.|+++++.+|.+..+|..++.++...|++++|++.|+++++.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 55667777777777788888888888777777777777777777777788888887777777654
No 206
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.15 E-value=2.3e-05 Score=58.59 Aligned_cols=83 Identities=14% Similarity=0.148 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Q 045674 497 VYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCL 576 (650)
Q Consensus 497 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 576 (650)
...+..+...+...|++++|+..++++++..+. +...+..++.++...|++++|...++++.+..|.+..++..++.++
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 445666677777777777777777777765433 5667777777888888888888888888877777777777777777
Q ss_pred HHcC
Q 045674 577 CKTG 580 (650)
Q Consensus 577 ~~~g 580 (650)
...|
T Consensus 88 ~~~g 91 (91)
T 1na3_A 88 QKQG 91 (91)
T ss_dssp HHHC
T ss_pred HhcC
Confidence 6544
No 207
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.13 E-value=3.2e-05 Score=77.83 Aligned_cols=124 Identities=9% Similarity=0.007 Sum_probs=93.1
Q ss_pred HHHcCCHHHHHHHHHHHHHc-----CCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCC-CC-HHHHHH
Q 045674 472 LAKCGKLDEALALFKRMEDE-----GCD-Q-TVYTYTILINGMFKEHRNEEALKLWDMMID-----KGIT-PT-AASFRA 537 (650)
Q Consensus 472 ~~~~g~~~~A~~~~~~~~~~-----~~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~-p~-~~~~~~ 537 (650)
+..+|++++|+.++++.++. |.. | ...+++.|+.+|...|++++|..+++++++ .|.. |+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 55678888888888777552 211 1 345778888888888898888888888764 2333 22 346788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhh-----CCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 045674 538 LSIGLCLSGKVARACKILDELAP-----KGIIP---ETAFEDMITCLCKTGRIKEACKLADGIVDR 595 (650)
Q Consensus 538 l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 595 (650)
|+..|...|++++|..+++++++ .|++. .+....+..++...|.+++|..+|+++.+.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999998874 56663 355677888888999999999999998764
No 208
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.09 E-value=4.8e-06 Score=63.67 Aligned_cols=88 Identities=11% Similarity=0.073 Sum_probs=65.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 045674 537 ALSIGLCLSGKVARACKILDELAPKGIIPET-AFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAG 615 (650)
Q Consensus 537 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 615 (650)
..+..+...|++++|...++++++..+.+.. ++..++.++...|++++|++.|+++++.+ +.+..++.. +
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~--------~ 75 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN-PDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHH--------H
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHH--------H
Confidence 3456677888888888888888888787777 88888888888888888888888888876 445554421 5
Q ss_pred CHHHHHHHHHHHHHCCCC
Q 045674 616 NADLAIKLMHSKIGVGYD 633 (650)
Q Consensus 616 ~~~~A~~~~~~~~~~~~~ 633 (650)
.+.+|...++++.+..+.
T Consensus 76 ~~~~a~~~~~~~~~~~p~ 93 (99)
T 2kc7_A 76 MVMDILNFYNKDMYNQLE 93 (99)
T ss_dssp HHHHHHHHHCCTTHHHHC
T ss_pred HHHHHHHHHHHHhccCcc
Confidence 566677777666655444
No 209
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.04 E-value=2.5e-05 Score=59.71 Aligned_cols=68 Identities=15% Similarity=-0.015 Sum_probs=45.0
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 045674 563 IIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVG 631 (650)
Q Consensus 563 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 631 (650)
|.+..++..++.++...|++++|++.|+++++.+ +.+..+|..++.+|...|++++|++.++++++..
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 71 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVA 71 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 4456666667777777777777777777776665 5556666666777777777777777777666553
No 210
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.93 E-value=8.1e-05 Score=55.49 Aligned_cols=66 Identities=18% Similarity=0.080 Sum_probs=39.6
Q ss_pred CHHHHHHHHHHHHhcCC---HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 045674 531 TAASFRALSIGLCLSGK---VARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDRE 596 (650)
Q Consensus 531 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 596 (650)
+...+..++.++...++ .++|..+++++++.+|.+......++..+...|++++|+..|+++++.+
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 45555555555544333 4666666666666666666666666666666666666666666666554
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.88 E-value=0.00012 Score=69.11 Aligned_cols=73 Identities=11% Similarity=0.003 Sum_probs=59.8
Q ss_pred hCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 045674 560 PKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYDR 634 (650)
Q Consensus 560 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 634 (650)
..++.++.++..++..+...|++++|+..+++++..+ |+...|..++..+.-.|++++|++.+++++..+|.+
T Consensus 271 ~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 271 PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 3445578888888888888899999999999998886 677777788888888999999999999998887764
No 212
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.82 E-value=0.0015 Score=58.99 Aligned_cols=91 Identities=9% Similarity=0.044 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHhhCCCC--cHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhc-CCHH
Q 045674 548 VARACKILDELAPKGII--PETAFEDMITCLCKT-----GRIKEACKLADGIVDREREI-PGKIRTALINALRKA-GNAD 618 (650)
Q Consensus 548 ~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~-g~~~ 618 (650)
..+|...++++++.++. +...|..++..|... |+.++|.+.|+++++.+ +. +..++..++..++.. |+++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~Ln-P~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYC-SAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHC-CTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhC-CCCCchHHHHHHHHHHHhcCCHH
Confidence 57888889999998888 778899999998885 89999999999999887 33 478888888888774 8999
Q ss_pred HHHHHHHHHHHCCCC--Chhhhh
Q 045674 619 LAIKLMHSKIGVGYD--RMGSIK 639 (650)
Q Consensus 619 ~A~~~~~~~~~~~~~--~~~~~~ 639 (650)
+|.+.+++++...+. |+..+-
T Consensus 258 ~a~~~L~kAL~a~p~~~P~~~la 280 (301)
T 3u64_A 258 GFDEALDRALAIDPESVPHNKLL 280 (301)
T ss_dssp HHHHHHHHHHHCCGGGCSSCHHH
T ss_pred HHHHHHHHHHcCCCCCCCChhHH
Confidence 999999999998887 655443
No 213
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.81 E-value=8.2e-05 Score=60.18 Aligned_cols=83 Identities=17% Similarity=0.132 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHhhCC-CC-cHHHHHHHHHHHHHcCCHHHHHH
Q 045674 513 NEEALKLWDMMIDKGITPTAASFRALSIGLCLSG---KVARACKILDELAPKG-II-PETAFEDMITCLCKTGRIKEACK 587 (650)
Q Consensus 513 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~A~~ 587 (650)
...+.+.|.+..+.+. ++..+...+++++++.+ ++++++.+|+.+.+.+ |. ..+.+..++.++.+.|++++|++
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 4455666666666554 47777777777777777 5567777777777765 42 56677777777777788888888
Q ss_pred HHHHHHHcC
Q 045674 588 LADGIVDRE 596 (650)
Q Consensus 588 ~~~~~~~~~ 596 (650)
+++.+++..
T Consensus 93 y~~~lL~ie 101 (152)
T 1pc2_A 93 YVRGLLQTE 101 (152)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHhcC
Confidence 887777764
No 214
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.71 E-value=0.074 Score=56.83 Aligned_cols=27 Identities=19% Similarity=0.313 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHh
Q 045674 254 TYNTMIKGYCKVGKTQKAMEKFRAMEA 280 (650)
Q Consensus 254 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 280 (650)
-|..+++++.+.++.+.+.++|.++..
T Consensus 232 dy~~a~~~ai~LnD~~li~~if~~l~~ 258 (963)
T 4ady_A 232 DYLTLNKVVVNLNDAGLALQLFKKLKE 258 (963)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455666777777888888888888764
No 215
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.65 E-value=0.00043 Score=51.50 Aligned_cols=71 Identities=13% Similarity=-0.003 Sum_probs=61.5
Q ss_pred CCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 045674 562 GIIPETAFEDMITCLCKTGR---IKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYD 633 (650)
Q Consensus 562 ~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 633 (650)
.+.++.++..++.++...++ .++|..+++++++.+ |.+..++..++..+.+.|++++|+..|+++++..+.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 35678888999999876665 789999999999987 778889999999999999999999999999998777
No 216
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.65 E-value=0.00048 Score=55.72 Aligned_cols=90 Identities=10% Similarity=0.112 Sum_probs=64.5
Q ss_pred CHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHH
Q 045674 547 KVARACKILDELAPKGIIPETAFEDMITCLCKTG---RIKEACKLADGIVDREREI--PGKIRTALINALRKAGNADLAI 621 (650)
Q Consensus 547 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~ 621 (650)
....+.+.|.+....++.+.++...+++++++.+ +.++++.+++...+.+ .| +...+..++-+|.+.|++++|+
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 3455666677766666777777778888888877 5667888888877764 23 4567777777788888888888
Q ss_pred HHHHHHHHCCCCChhh
Q 045674 622 KLMHSKIGVGYDRMGS 637 (650)
Q Consensus 622 ~~~~~~~~~~~~~~~~ 637 (650)
++++.+++..|.....
T Consensus 92 ~y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 92 KYVRGLLQTEPQNNQA 107 (152)
T ss_dssp HHHHHHHHHCTTCHHH
T ss_pred HHHHHHHhcCCCCHHH
Confidence 8888888877765433
No 217
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.65 E-value=0.00019 Score=55.10 Aligned_cols=75 Identities=9% Similarity=0.066 Sum_probs=56.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 045674 531 TAASFRALSIGLCLSGKVARACKILDELAPK-------GIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKI 603 (650)
Q Consensus 531 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 603 (650)
+..-...++..+...|+++.|..+|+.+.+. ++....++..++.++.+.|++++|+.+++++++.. |.+..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~-P~~~~~ 82 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD-PEHQRA 82 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHH
Confidence 5556677888888888999999888888753 23466788888888888888888888888888775 555554
Q ss_pred HHH
Q 045674 604 RTA 606 (650)
Q Consensus 604 ~~~ 606 (650)
...
T Consensus 83 ~~n 85 (104)
T 2v5f_A 83 NGN 85 (104)
T ss_dssp HHH
T ss_pred Hhh
Confidence 433
No 218
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.61 E-value=0.00022 Score=70.50 Aligned_cols=87 Identities=6% Similarity=-0.078 Sum_probs=46.3
Q ss_pred hcCCHHHHHHHHHHHHH---CCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhh-----CCCCc---HHHHHHHH
Q 045674 509 KEHRNEEALKLWDMMID---KGITPT----AASFRALSIGLCLSGKVARACKILDELAP-----KGIIP---ETAFEDMI 573 (650)
Q Consensus 509 ~~~~~~~A~~~~~~~~~---~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~---~~~~~~l~ 573 (650)
..|++++|..++++.++ .-+.|+ ..+++.++.+|...|++++|+.+++++++ .|+.. ...++.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 45666666666666553 111111 23455566666666666666666666553 23332 23355555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHc
Q 045674 574 TCLCKTGRIKEACKLADGIVDR 595 (650)
Q Consensus 574 ~~~~~~g~~~~A~~~~~~~~~~ 595 (650)
.+|...|++++|+.+++++++.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHH
Confidence 5555555555555555555543
No 219
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.60 E-value=0.00036 Score=52.91 Aligned_cols=67 Identities=22% Similarity=0.214 Sum_probs=59.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCChhhh
Q 045674 571 DMITCLCKTGRIKEACKLADGIVDREREIPGK-IRTALINALRKAGNADLAIKLMHSKIGVGYDRMGSI 638 (650)
Q Consensus 571 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 638 (650)
..+..+...|++++|++.++++++.. +.+.. ++..++.+|...|++++|++.++++++..+......
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 46778899999999999999999986 66778 999999999999999999999999999988755443
No 220
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.57 E-value=0.0011 Score=50.79 Aligned_cols=76 Identities=8% Similarity=-0.037 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCChhhhhh
Q 045674 567 TAFEDMITCLCKTGRIKEACKLADGIVDRE------REIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYDRMGSIKR 640 (650)
Q Consensus 567 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 640 (650)
.-...+|..+...|+++.|+..++.+++.. -.....++..++.++.+.|++++|+..++++++..|.......+
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n 85 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhh
Confidence 334455666666666666666666655431 01234455556666666666666666666666655554444444
Q ss_pred hh
Q 045674 641 RV 642 (650)
Q Consensus 641 ~~ 642 (650)
+.
T Consensus 86 ~~ 87 (104)
T 2v5f_A 86 LK 87 (104)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 221
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.55 E-value=0.13 Score=54.94 Aligned_cols=272 Identities=12% Similarity=0.085 Sum_probs=146.2
Q ss_pred HHHhcCChHHHHHHHHHHHHcC--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--C-----CCHHhHHHHHHH
Q 045674 331 GLCKVGKCIEGHAIFESMIRRG--CQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGV--E-----PDEVTYGVIISG 401 (650)
Q Consensus 331 ~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~-----p~~~~~~~l~~~ 401 (650)
+.+..|+.+++..++...+..+ -.+.+..-..+.-+....|..+++..++.......- . +....-..+.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 4556777788877777665421 122233334445555666665677887777654311 0 111112223223
Q ss_pred HHhcCC-HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHHcCC
Q 045674 402 LCKNER-LEEAMQYFEFCRANGVAV-NAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYN--VLIDALAKCGK 477 (650)
Q Consensus 402 ~~~~g~-~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~ 477 (650)
++-.|. -+++.+.+..+....-.. ....-..+...+...|+-+....++..+.+.. +..+.. .+.-++...|+
T Consensus 463 la~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTC
T ss_pred HHhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCC
Confidence 333332 245666666655542110 01112234444556788877778877777642 333333 33444456788
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 045674 478 LDEALALFKRMEDEGCDQTVYTY--TILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKIL 555 (650)
Q Consensus 478 ~~~A~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 555 (650)
.+.+..+++.+... ..|....- ..++.+|+..|+.....+++..+.+.. ..+..-...++-++...|+.+.+.+++
T Consensus 540 ~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 540 QELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp GGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred hHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 88888888887764 12222211 234456778899887777988888642 223333334444555567776667777
Q ss_pred HHHhhCCCCcHHHHHHHHHH--HHHcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 045674 556 DELAPKGIIPETAFEDMITC--LCKTGR-IKEACKLADGIVDREREIPGKIRTALINALR 612 (650)
Q Consensus 556 ~~~~~~~~~~~~~~~~l~~~--~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 612 (650)
+.+.+.+ ++.+-...+.+ ....|+ ..+|+..+..+.. .++..+....+.++.
T Consensus 618 ~~L~~~~--d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG 672 (963)
T 4ady_A 618 QLLSKSH--NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIALS 672 (963)
T ss_dssp TTGGGCS--CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHHH
T ss_pred HHHHhcC--CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHHH
Confidence 6665543 34443333333 333444 3678888888874 355555544444443
No 222
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.50 E-value=0.0091 Score=53.97 Aligned_cols=105 Identities=14% Similarity=0.078 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHhhCCCC-cHHHHHHHHHHHHHc-CCH
Q 045674 513 NEEALKLWDMMIDKGITPT---AASFRALSIGLCLS-----GKVARACKILDELAPKGII-PETAFEDMITCLCKT-GRI 582 (650)
Q Consensus 513 ~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~-g~~ 582 (650)
...|...++++++. .|+ ...+..++..|... |+.++|.++|+++++.+|. +..++..+++.++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 46788888888885 555 55788899889884 9999999999999999997 589999999999985 999
Q ss_pred HHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 045674 583 KEACKLADGIVDRERE--IPGKIRTALINALRKAGNADLAIKLMHSK 627 (650)
Q Consensus 583 ~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 627 (650)
++|.+++++++..+.. |+....+ .+.-.+|..++.++
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan--------~~~q~eA~~LL~~~ 295 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLV--------ILSQKRARWLKAHV 295 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHH--------HHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHH--------HHHHHHHHHHHHHh
Confidence 9999999999987533 3333222 23335666665544
No 223
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.48 E-value=0.00082 Score=66.52 Aligned_cols=92 Identities=11% Similarity=-0.046 Sum_probs=46.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhh-----CCCCc---HHH
Q 045674 504 INGMFKEHRNEEALKLWDMMIDK---GITPT----AASFRALSIGLCLSGKVARACKILDELAP-----KGIIP---ETA 568 (650)
Q Consensus 504 ~~~~~~~~~~~~A~~~~~~~~~~---~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~---~~~ 568 (650)
+..+...|++++|+.+++++++. -+.|+ ..+++.++.+|...|++++|+.++++++. .|+.. ...
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 33344556666666666665532 11111 23445555555556666666666555542 23332 233
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 045674 569 FEDMITCLCKTGRIKEACKLADGIVDR 595 (650)
Q Consensus 569 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 595 (650)
++.|+.+|...|++++|+.+++++++.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 455555555555555555555555544
No 224
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.46 E-value=0.0021 Score=60.72 Aligned_cols=66 Identities=12% Similarity=0.018 Sum_probs=29.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 045674 496 TVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGI 563 (650)
Q Consensus 496 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 563 (650)
+..+|..+...+...|++++|...+++++..+ |+...+..+++.+...|++++|.+.|+++...+|
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 44444444444444444444444444444432 3444444444444444444444444444444443
No 225
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.35 E-value=0.00081 Score=66.44 Aligned_cols=87 Identities=14% Similarity=-0.002 Sum_probs=63.9
Q ss_pred HcCCHHHHHHHHHHHHHc-----CCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCC-CC-HHHHHHHH
Q 045674 474 KCGKLDEALALFKRMEDE-----GCD-Q-TVYTYTILINGMFKEHRNEEALKLWDMMID-----KGIT-PT-AASFRALS 539 (650)
Q Consensus 474 ~~g~~~~A~~~~~~~~~~-----~~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~-p~-~~~~~~l~ 539 (650)
..|++++|+.++++.++. |.. | ...+++.|+.+|...|++++|+.+++++++ .|.. |+ ..+++.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 358889999888887652 221 1 245778888888889999999999888874 3432 22 23578888
Q ss_pred HHHHhcCCHHHHHHHHHHHhh
Q 045674 540 IGLCLSGKVARACKILDELAP 560 (650)
Q Consensus 540 ~~~~~~g~~~~A~~~~~~~~~ 560 (650)
..|..+|++++|+.+++++++
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 888899999999888877765
No 226
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.30 E-value=0.022 Score=62.33 Aligned_cols=189 Identities=20% Similarity=0.162 Sum_probs=112.0
Q ss_pred HHhcCCHHHHHH-HHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 045674 367 YAKLGSMNEAIN-IFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDE 445 (650)
Q Consensus 367 ~~~~~~~~~A~~-~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 445 (650)
....+++++|.+ ++..+ ++......++..+.+.|..++|+++.+. .. .-.......|++++
T Consensus 609 ~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~---------~~---~~f~~~l~~~~~~~ 670 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPD---------QD---QKFELALKVGQLTL 670 (814)
T ss_dssp HHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCC---------HH---HHHHHHHHHTCHHH
T ss_pred HHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCC---------cc---hheehhhhcCCHHH
Confidence 345677777766 44221 1122336666667778888887766531 11 11233566788888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045674 446 AEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMID 525 (650)
Q Consensus 446 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 525 (650)
|.++.+. ..+...|..++..+.+.|+++.|++.|.++.+ |..+...+...|+.+...++.+.+..
T Consensus 671 A~~~~~~------~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~ 735 (814)
T 3mkq_A 671 ARDLLTD------ESAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAET 735 (814)
T ss_dssp HHHHHTT------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHh------hCcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHH
Confidence 8877543 35677888888888888888888888887653 33444555556777666555555444
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----
Q 045674 526 KGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPG---- 601 (650)
Q Consensus 526 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---- 601 (650)
.|. +.....++.+.|++++|++++ .+.+++++|..+.+.. .+..
T Consensus 736 ~~~------~~~A~~~~~~~g~~~~a~~~~---------------------~~~~~~~~A~~lA~~~-----~~~~~~i~ 783 (814)
T 3mkq_A 736 TGK------FNLAFNAYWIAGDIQGAKDLL---------------------IKSQRFSEAAFLGSTY-----GLGDNEVN 783 (814)
T ss_dssp TTC------HHHHHHHHHHHTCHHHHHHHH---------------------HHTTCHHHHHHHHHHT-----TCCHHHHH
T ss_pred cCc------hHHHHHHHHHcCCHHHHHHHH---------------------HHcCChHHHHHHHHHh-----CCChHHHH
Confidence 321 122233345566666666554 4446777777776653 2333
Q ss_pred HHHHHHHHHHHhcCCHHHH
Q 045674 602 KIRTALINALRKAGNADLA 620 (650)
Q Consensus 602 ~~~~~l~~~~~~~g~~~~A 620 (650)
.+.......+...|+.+.|
T Consensus 784 ~~~~~~~~~L~~~~~~~~a 802 (814)
T 3mkq_A 784 DIVTKWKENLILNGKNTVS 802 (814)
T ss_dssp HHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHHHhccchhHH
Confidence 4445555556666665443
No 227
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.21 E-value=0.0026 Score=62.96 Aligned_cols=91 Identities=15% Similarity=0.074 Sum_probs=46.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcC---CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCC-CC-HHH
Q 045674 469 IDALAKCGKLDEALALFKRMEDEG---CDQ----TVYTYTILINGMFKEHRNEEALKLWDMMID-----KGIT-PT-AAS 534 (650)
Q Consensus 469 ~~~~~~~g~~~~A~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~-p~-~~~ 534 (650)
+..+.+.|++++|+.++++.++.. ..+ ...+++.|+.+|...|++++|+.+++++++ .|.. |+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 333445566666666666554321 011 133455555566666666666666665552 1221 11 124
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHh
Q 045674 535 FRALSIGLCLSGKVARACKILDELA 559 (650)
Q Consensus 535 ~~~l~~~~~~~g~~~~A~~~~~~~~ 559 (650)
++.++..|...|++++|+.++++++
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 5555666666666666665555443
No 228
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.15 E-value=0.003 Score=50.13 Aligned_cols=64 Identities=8% Similarity=0.011 Sum_probs=48.2
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCChhhhhhhh
Q 045674 578 KTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYDRMGSIKRRV 642 (650)
Q Consensus 578 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 642 (650)
..++.++|.++|+.+++.. +.=..+|...+..-.++|+..+|++++.+++..++.|...+...+
T Consensus 72 ei~D~d~aR~vy~~a~~~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~ 135 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANC-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIAL 135 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 4477888888888887664 333778888888888888888888888888888888766655443
No 229
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.09 E-value=0.0063 Score=47.23 Aligned_cols=88 Identities=15% Similarity=0.077 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHhhCC-CC-cHHHHHHHHHHHHHcCCHHHHHH
Q 045674 513 NEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVAR---ACKILDELAPKG-II-PETAFEDMITCLCKTGRIKEACK 587 (650)
Q Consensus 513 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~A~~ 587 (650)
...+.+.|.+....|. ++..+-..++|++.+..+..+ ++.+++.+.+.+ |. ..+....++.++.+.|++++|.+
T Consensus 17 l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3444455555554443 577777778888887776555 778888877765 32 55677777888888888888888
Q ss_pred HHHHHHHcCCCCCHH
Q 045674 588 LADGIVDREREIPGK 602 (650)
Q Consensus 588 ~~~~~~~~~~~~~~~ 602 (650)
+++.+++.. |.+..
T Consensus 96 ~~~~lL~~e-P~n~Q 109 (126)
T 1nzn_A 96 YVRGLLQTE-PQNNQ 109 (126)
T ss_dssp HHHHHHHHC-TTCHH
T ss_pred HHHHHHHhC-CCCHH
Confidence 888888764 43433
No 230
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.05 E-value=0.0036 Score=48.59 Aligned_cols=92 Identities=10% Similarity=0.072 Sum_probs=74.5
Q ss_pred cCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHH
Q 045674 545 SGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKE---ACKLADGIVDRERE-IPGKIRTALINALRKAGNADLA 620 (650)
Q Consensus 545 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A 620 (650)
......+.+.|.+....+..+..+-..+++++.+..+..+ ++.+++.+.+.+.+ ........++-++.+.|+|++|
T Consensus 14 ~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 3445566777777777777888999999999999887666 99999999876511 2456778899999999999999
Q ss_pred HHHHHHHHHCCCCChh
Q 045674 621 IKLMHSKIGVGYDRMG 636 (650)
Q Consensus 621 ~~~~~~~~~~~~~~~~ 636 (650)
++.++.+++..|....
T Consensus 94 ~~~~~~lL~~eP~n~Q 109 (126)
T 1nzn_A 94 LKYVRGLLQTEPQNNQ 109 (126)
T ss_dssp HHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHhCCCCHH
Confidence 9999999999887543
No 231
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.96 E-value=0.065 Score=58.52 Aligned_cols=45 Identities=13% Similarity=0.204 Sum_probs=23.2
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 045674 368 AKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFC 418 (650)
Q Consensus 368 ~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 418 (650)
...|+++.|.++.+.+ .+...|..+...+.+.|+++.|.+.|..+
T Consensus 663 l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 4455555555553322 14445555555555555555555555543
No 232
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.94 E-value=0.0071 Score=48.00 Aligned_cols=113 Identities=11% Similarity=0.077 Sum_probs=61.0
Q ss_pred CCCHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHcCCCCCH-HHHHHHHHH------HHhcCCHHHHHHHHHHHHH
Q 045674 459 PRDSYCYNVLIDALAKCGKL------DEALALFKRMEDEGCDQTV-YTYTILING------MFKEHRNEEALKLWDMMID 525 (650)
Q Consensus 459 ~~~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~~~~~~~-~~~~~l~~~------~~~~~~~~~A~~~~~~~~~ 525 (650)
+.|..+|...+....+.|+. +..+++|++.... ++|+. ..|...+.. +...++.++|.++|+.+++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 45666666666666666666 6666677766654 23321 111111111 1233566666666666654
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHH
Q 045674 526 KGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMI 573 (650)
Q Consensus 526 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 573 (650)
.+-.- ...|...++--.++|+...|.+++.+++..++.+.+.+...+
T Consensus 89 ~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~ 135 (161)
T 4h7y_A 89 NCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIAL 135 (161)
T ss_dssp HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHH
T ss_pred HhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 32222 445555555555666666666666666666666555554443
No 233
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.84 E-value=0.11 Score=40.27 Aligned_cols=66 Identities=21% Similarity=0.313 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 045674 567 TAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYD 633 (650)
Q Consensus 567 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 633 (650)
+.....+..+...|+-++-.+++..++... ++++..+..++.+|.+.|+..+|.++++++.++|..
T Consensus 92 e~vd~ALd~lv~~~KkDqLdki~~~~l~n~-~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 92 EHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhccHhHHHHHHHHHhccC-CCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 344444555566666666666666654432 566666667777777777777777777777776654
No 234
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.49 E-value=0.2 Score=38.83 Aligned_cols=140 Identities=13% Similarity=0.112 Sum_probs=85.1
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 045674 437 LGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEA 516 (650)
Q Consensus 437 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 516 (650)
+.-.|.+++..++..+.... .+..-+|-++.-....-+-+-..++++.+-+. + |. ...|+....
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki-F--Di----------s~C~NlKrV 80 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY-F--DL----------DKCQNLKSV 80 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-S--CG----------GGCSCTHHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh-c--Cc----------HhhhcHHHH
Confidence 34457777777777777664 35555555555555555555555555554332 1 11 123343333
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 045674 517 LKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDRE 596 (650)
Q Consensus 517 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 596 (650)
...+-.+ .-+...++..+..+..+|+-++-.+++..+....+.+++.+..++.+|.+.|+..+|.+++.++.+.|
T Consensus 81 i~C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 81 VECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 3333322 11444555566667778888888888888766555577888888888888888888888888888777
Q ss_pred C
Q 045674 597 R 597 (650)
Q Consensus 597 ~ 597 (650)
.
T Consensus 156 ~ 156 (172)
T 1wy6_A 156 E 156 (172)
T ss_dssp C
T ss_pred h
Confidence 3
No 235
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.29 E-value=2.9e-06 Score=81.18 Aligned_cols=251 Identities=12% Similarity=0.058 Sum_probs=152.2
Q ss_pred CCchhhhHHHHHHhhcCCCChHHHHHHHHhccCCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 045674 91 SSDMEANLDSFCRKFLIKLSPNFVSFVLRNHDVSKRPNVGLRLFTWAARQKKYSHNLECYISLIDCLALCGDVDRVRLVF 170 (650)
Q Consensus 91 ~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 170 (650)
.+...+++++|.+ .-+|+.+..|+..+...|.++.-.+++.-+++.. .++.+=..++-+|++.+++.+..+++
T Consensus 67 ~~~v~eAIdsyIk----A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~---ke~~IDteLi~ayAk~~rL~elEefl 139 (624)
T 3lvg_A 67 KGMVKEAIDSYIK----ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA---RESYVETELIFALAKTNRLAELEEFI 139 (624)
T ss_dssp SSSCTTTTTSSCC----CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC---CSTTTTHHHHHHHHTSCSSSTTTSTT
T ss_pred cCchHHHHHHHHh----CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh---cccccHHHHHHHHHhhCcHHHHHHHH
Confidence 4667788887764 3567777888888889999999999999887653 34445567899999999887655443
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCC
Q 045674 171 NELKEKGFLMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMFIESSELVFKVMENGKVGP 250 (650)
Q Consensus 171 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~ 250 (650)
. .++..-...++.-+...|.++.|.-+|..+.. |..|..+++..|++..|.+.-++ .-
T Consensus 140 ~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq~AVdaArK------An 197 (624)
T 3lvg_A 140 N-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARK------AN 197 (624)
T ss_dssp S-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGGSSTTTTTT------CC
T ss_pred c-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHHHHHHHHHh------cC
Confidence 2 34555566778888888888888777765432 33344556667777666543332 23
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 045674 251 DVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIG 330 (650)
Q Consensus 251 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 330 (650)
++.+|-.+-.+|...+++.-|.-.--.+.-. +| -...++..|-..|.+++-+.+++.-.... ......|+-|.-
T Consensus 198 s~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaI 271 (624)
T 3lvg_A 198 STRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAI 271 (624)
T ss_dssp SSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHH
T ss_pred ChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHH
Confidence 5677777777777777776665444333321 11 11224555666777777777777655321 224556666666
Q ss_pred HHHhcCChHHHHHHHHHHHHc-CCCc------CHHHHHHHHHHHHhcCCHHHHH
Q 045674 331 GLCKVGKCIEGHAIFESMIRR-GCQP------NVAIYTALIDSYAKLGSMNEAI 377 (650)
Q Consensus 331 ~~~~~g~~~~a~~~~~~~~~~-~~~~------~~~~~~~l~~~~~~~~~~~~A~ 377 (650)
.|++- +.++-.+.++..-.+ +++- ....|.-++-.|.+-.+++.|.
T Consensus 272 LYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 272 LYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 66554 233333333222111 1110 1234555666666666666554
No 236
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.25 E-value=0.081 Score=41.17 Aligned_cols=70 Identities=23% Similarity=0.194 Sum_probs=52.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHhhCCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 045674 527 GITPTAASFRALSIGLCLSGKV---ARACKILDELAPKGII-PETAFEDMITCLCKTGRIKEACKLADGIVDRE 596 (650)
Q Consensus 527 ~~~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 596 (650)
+..|+..+-..++|++.+..+. .+++.+++.+.+.++. ..+.+..++.++.+.|++++|.++.+.+++..
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~e 108 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 108 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 4567778888888888877654 4677788887776664 56777778888888888888888888888764
No 237
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.13 E-value=0.19 Score=39.74 Aligned_cols=74 Identities=20% Similarity=0.140 Sum_probs=56.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHhhCCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 045674 527 GITPTAASFRALSIGLCLSGK---VARACKILDELAPKGII-PETAFEDMITCLCKTGRIKEACKLADGIVDREREIPG 601 (650)
Q Consensus 527 ~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 601 (650)
+..|+..+-..++|++.+..+ ..+++.+++.+...++. ..+....++.++.+.|++++|.++.+.+++.. |.|.
T Consensus 34 ~~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e-P~n~ 111 (144)
T 1y8m_A 34 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE-RNNK 111 (144)
T ss_dssp STTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC-CCCH
T ss_pred cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcH
Confidence 345788888888888888765 44678888888876664 66777788888888888888888888888874 4343
No 238
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.04 E-value=0.5 Score=39.22 Aligned_cols=8 Identities=13% Similarity=0.156 Sum_probs=2.9
Q ss_pred CCHHHHHH
Q 045674 511 HRNEEALK 518 (650)
Q Consensus 511 ~~~~~A~~ 518 (650)
|+++++.+
T Consensus 103 Gdv~~~i~ 110 (177)
T 3mkq_B 103 NSTKERSS 110 (177)
T ss_dssp TCHHHHHH
T ss_pred CCHHHHHH
Confidence 33333333
No 239
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=95.96 E-value=0.07 Score=41.54 Aligned_cols=76 Identities=11% Similarity=-0.022 Sum_probs=62.5
Q ss_pred CCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCChhh
Q 045674 562 GIIPETAFEDMITCLCKTGR---IKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYDRMGS 637 (650)
Q Consensus 562 ~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 637 (650)
|..+..+-..+++++.+..+ ..+++.+++.+.+.+.......+..++-++.+.|++++|+++.+.+++..|.....
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 34478888889999998876 45789999999987622346788899999999999999999999999998876443
No 240
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.90 E-value=0.61 Score=38.71 Aligned_cols=43 Identities=21% Similarity=0.308 Sum_probs=19.9
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 045674 439 KAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKR 487 (650)
Q Consensus 439 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 487 (650)
..|+++.|.++.+++ .+...|..|+....+.|+++-|++.|.+
T Consensus 17 ~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~ 59 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQT 59 (177)
T ss_dssp HTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 344444444444332 2344444455444445555444444444
No 241
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.76 E-value=0.17 Score=39.90 Aligned_cols=73 Identities=11% Similarity=-0.009 Sum_probs=61.2
Q ss_pred CcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCChh
Q 045674 564 IPETAFEDMITCLCKTGR---IKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYDRMG 636 (650)
Q Consensus 564 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 636 (650)
.+..+-..+++++.+..+ ..+++.+++.+.+.+..........++-++.+.|+|++|+++.+.+++..|....
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 478888889999999886 4578999999998752235677788999999999999999999999999887643
No 242
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=94.79 E-value=0.13 Score=41.85 Aligned_cols=57 Identities=9% Similarity=-0.018 Sum_probs=32.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC-CCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 045674 503 LINGMFKEHRNEEALKLWDMMIDK-GITPT-------AASFRALSIGLCLSGKVARACKILDELA 559 (650)
Q Consensus 503 l~~~~~~~~~~~~A~~~~~~~~~~-~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 559 (650)
-+..+...|.++.|+-+.+.+... +..|+ ..++..++.++...|++..|...|++++
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 344556667777776666654421 11222 1244556666667777777777776654
No 243
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.75 E-value=0.16 Score=53.33 Aligned_cols=53 Identities=13% Similarity=0.001 Sum_probs=27.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 045674 574 TCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSK 627 (650)
Q Consensus 574 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 627 (650)
..|...|+++-|+++.+++.... |.+-.+|..|+.+|...|+++.|+-.++.+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 33444555555555555555443 444455555555555555555555554443
No 244
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=94.48 E-value=3.1 Score=38.69 Aligned_cols=166 Identities=13% Similarity=0.023 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH----HHHHHcCCCCCHHHHHHHH
Q 045674 429 FYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALF----KRMEDEGCDQTVYTYTILI 504 (650)
Q Consensus 429 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~----~~~~~~~~~~~~~~~~~l~ 504 (650)
+|.++..-|.+.+++++|++++-.... .+.+.|+...|.++. +-..+.+.++|......++
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA~---------------~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVSQ---------------TLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 344555568888888888887654332 245566665555443 4445567777887777777
Q ss_pred HHHHhcCCHH-HHHHHHHHHHH----C--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc-HHHHHHHHHHH
Q 045674 505 NGMFKEHRNE-EALKLWDMMID----K--GITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIP-ETAFEDMITCL 576 (650)
Q Consensus 505 ~~~~~~~~~~-~A~~~~~~~~~----~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~ 576 (650)
..+.....-+ .=..+.+++++ . ...-|+.....++..|.+.+++.+|...|- . +-++ .+.+..+..-+
T Consensus 102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew 177 (336)
T 3lpz_A 102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEW 177 (336)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHH
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHH
Confidence 7665443211 11233333331 1 233466777777777777777777777662 1 2222 24444443333
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHH
Q 045674 577 CKTGRIKEACKLADGIVDREREIPGKIR-TALINALRKAGNADLAIKLMHSKIG 629 (650)
Q Consensus 577 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~ 629 (650)
...+. +.....+ ...+--|.-.++...|..++....+
T Consensus 178 ~~~~~----------------~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 178 YKQDE----------------SHTAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHTSC----------------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhcC----------------CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 33222 1112222 2223336678899999887766554
No 245
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.43 E-value=3.8 Score=40.43 Aligned_cols=50 Identities=6% Similarity=0.135 Sum_probs=28.7
Q ss_pred CChHHHHHHHHHHHHc-----CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045674 336 GKCIEGHAIFESMIRR-----GCQPNVAIYTALIDSYAKLGSMNEAINIFERMKY 385 (650)
Q Consensus 336 g~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 385 (650)
|++++|.+.+..+.+. ...........++..|...|+++...+.+.-+..
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk 84 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK 84 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 5666666666555432 1222344556666777777777776666655543
No 246
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=94.34 E-value=0.22 Score=40.52 Aligned_cols=133 Identities=14% Similarity=0.121 Sum_probs=80.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHH
Q 045674 465 YNVLIDALAKCGKLDEALALFKRMEDEG-CDQT-------VYTYTILINGMFKEHRNEEALKLWDMMIDK--GITPTAAS 534 (650)
Q Consensus 465 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~p~~~~ 534 (650)
+..-+..+...|.++.|+-+.+.+.... ..++ ..++..++.++...|++..|...|+++++. .+.-+...
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 4455667788999999998887764421 1233 236677888999999999999999998742 11111111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 045674 535 FRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINAL 611 (650)
Q Consensus 535 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 611 (650)
...+.. ...... -... +.+.++-..++.|+.+.|++++|+.+++.+.... -++.+-..|+..|
T Consensus 103 ~~~~~~----~ss~p~-------s~~~-~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~--Rt~kvnm~LakLy 165 (167)
T 3ffl_A 103 RPSTGN----SASTPQ-------SQCL-PSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQ--RTPKINMLLANLY 165 (167)
T ss_dssp -------------------------CC-CCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGG--CCHHHHHHHHHHC
T ss_pred cccccc----cCCCcc-------cccc-cchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchh--cCHHHHHHHHHHh
Confidence 111100 000000 0011 2366778889999999999999999998765442 3455555555544
No 247
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=94.17 E-value=0.75 Score=40.94 Aligned_cols=124 Identities=11% Similarity=0.044 Sum_probs=85.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcH---HHHHHHHHHHHHcCC
Q 045674 505 NGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPE---TAFEDMITCLCKTGR 581 (650)
Q Consensus 505 ~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~ 581 (650)
....+.|+.++|++....-++..+. |...-..+++.+|-.|+++.|.+-++.+.+.+|... ..|..++.+-
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE----- 78 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAA----- 78 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH-----
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHH-----
Confidence 3456889999999999999988666 888888899999999999999999999998877622 2344444331
Q ss_pred HHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHCCCCChhhhh
Q 045674 582 IKEACKLADGIVDRERE-----IPGKIRTALINAL--RKAGNADLAIKLMHSKIGVGYDRMGSIK 639 (650)
Q Consensus 582 ~~~A~~~~~~~~~~~~~-----~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 639 (650)
..=++...-+.. ........++.++ ...|+.++|..+-.++.+.-+...+.+.
T Consensus 79 -----~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G~~~ 138 (273)
T 1zbp_A 79 -----QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAN 138 (273)
T ss_dssp -----HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEET
T ss_pred -----HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCCCcC
Confidence 111122211111 1233344555554 4579999999999999998666444433
No 248
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.56 E-value=0.38 Score=50.60 Aligned_cols=53 Identities=11% Similarity=0.063 Sum_probs=33.2
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045674 540 IGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGI 592 (650)
Q Consensus 540 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 592 (650)
..+...|+++-|+++-++++..-|.+-..|..|+.+|...|+++.|+-.++.+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 33445566666666666666665666666666666666666666666665554
No 249
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=93.44 E-value=2.4 Score=47.91 Aligned_cols=169 Identities=12% Similarity=0.124 Sum_probs=104.1
Q ss_pred HHHHHHhccCCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 045674 114 VSFVLRNHDVSKRPNVGLRLFTWAARQKKYSHNLECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFG 193 (650)
Q Consensus 114 ~~~~l~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 193 (650)
...++..+...+.++.+.++..|+ +.++..-..++.++...|++++|...|.+... |+..+...
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~------~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l--------- 878 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWL------NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQ--------- 878 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHS------CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCS---------
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhc------cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchh---------
Confidence 334444455556777787777774 33555667889999999999999999987642 11111000
Q ss_pred cCCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCC----hhhHHHHHHHHHHcCC
Q 045674 194 GLGMVEELLWVWRSMKENG--IEPSLYTYNFLMNGLVNSMFIESSELVFKVMENGKVGPD----VVTYNTMIKGYCKVGK 267 (650)
Q Consensus 194 ~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~ 267 (650)
...... +..+.... ...-..-|..++..+.+.+.++.+.++-+..++.....+ ...|..+.+.+...|+
T Consensus 879 -~~~~~~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ 953 (1139)
T 4fhn_B 879 -FAVLRE----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGK 953 (1139)
T ss_dssp -CSSHHH----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCC
T ss_pred -hhhhcc----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCC
Confidence 001111 11112111 111234567777778888888888877776654321112 1257788899999999
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 045674 268 TQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDS 305 (650)
Q Consensus 268 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 305 (650)
+++|...+-.+..... -......|+..+|..|..+.
T Consensus 954 ye~Ay~aL~~~pd~~~--r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 954 FDAAHVALMVLSTTPL--KKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp SGGGGHHHHHHHHSSS--CHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHhCCCHHH--HHHHHHHHHHHHHhCCChhh
Confidence 9999999888876532 45667777777777766543
No 250
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=93.36 E-value=4.9 Score=37.09 Aligned_cols=169 Identities=9% Similarity=-0.052 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HHHHHHcCCCCCHHHHHHHH
Q 045674 429 FYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALAL----FKRMEDEGCDQTVYTYTILI 504 (650)
Q Consensus 429 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~----~~~~~~~~~~~~~~~~~~l~ 504 (650)
.|.++..-|.+.+++++|++++..... .+.+.|+...|.++ ++...+.+.+++......++
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~ 99 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV 99 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 344455557777778877777654432 24555666555543 44444556777777777777
Q ss_pred HHHHhcCCHH-HHHHHHHHHH----HCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Q 045674 505 NGMFKEHRNE-EALKLWDMMI----DKG--ITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLC 577 (650)
Q Consensus 505 ~~~~~~~~~~-~A~~~~~~~~----~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 577 (650)
..+..-...+ .=.+++++++ +.| ..-++.....++..|.+.|++.+|...|-... .++.+.+..+..-+.
T Consensus 100 ~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~---~~s~~~~a~~l~~w~ 176 (312)
T 2wpv_A 100 RLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGT---HDSMIKYVDLLWDWL 176 (312)
T ss_dssp HHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSC---HHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC---CccHHHHHHHHHHHH
Confidence 6654422111 1123333333 121 22366666777777777777777666553110 013344443333333
Q ss_pred Hc---CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045674 578 KT---GRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGV 630 (650)
Q Consensus 578 ~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 630 (650)
.. |...++--++ ...+--|.-.|+...|..++....++
T Consensus 177 ~~~~~~~~~e~dlf~---------------~RaVL~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 177 CQVDDIEDSTVAEFF---------------SRLVFNYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHTTCCCHHHHHHHH---------------HHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HhcCCCCcchHHHHH---------------HHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 32 3332221111 11222356688999999998876643
No 251
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.26 E-value=0.54 Score=45.64 Aligned_cols=78 Identities=15% Similarity=0.095 Sum_probs=60.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCHHHHHHHHH
Q 045674 535 FRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVD-----REREIPGKIRTALIN 609 (650)
Q Consensus 535 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~l~~ 609 (650)
...++..+...|++++|...+..+....|.+...+..++.+|...|+..+|++.|+++.+ .|+.|.+.+-...-.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~~ 253 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNER 253 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 344566677888999999888888888888888888999999999999999888887643 478888876655544
Q ss_pred HHH
Q 045674 610 ALR 612 (650)
Q Consensus 610 ~~~ 612 (650)
.+.
T Consensus 254 il~ 256 (388)
T 2ff4_A 254 ILR 256 (388)
T ss_dssp HHT
T ss_pred HHc
Confidence 443
No 252
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.08 E-value=0.41 Score=46.47 Aligned_cols=74 Identities=14% Similarity=0.066 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCChhhhhhhh
Q 045674 568 AFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIG-----VGYDRMGSIKRRV 642 (650)
Q Consensus 568 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~~ 642 (650)
+...++..+...|++++|+..++.++... |-+...+..++.+|.+.|+..+|++.|+++.+ .|.+|...+..+.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 44567788899999999999999999886 77888999999999999999999999998654 5999887776554
No 253
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=91.01 E-value=9.5 Score=35.17 Aligned_cols=25 Identities=28% Similarity=0.252 Sum_probs=14.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHH
Q 045674 461 DSYCYNVLIDALAKCGKLDEALALF 485 (650)
Q Consensus 461 ~~~~~~~l~~~~~~~g~~~~A~~~~ 485 (650)
++.....++..|.+.|++.+|+..|
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 5555566666666666666665544
No 254
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.17 E-value=15 Score=36.13 Aligned_cols=96 Identities=14% Similarity=0.050 Sum_probs=60.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC---HHhHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC--HH
Q 045674 360 YTALIDSYAKLGSMNEAINIFERMKYE--GVEPD---EVTYGVIISGLCKNERLEEAMQYFEFCRA----NGVAVN--AM 428 (650)
Q Consensus 360 ~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~--~~ 428 (650)
...|+..|...|++.+|.+++..+... +.... ...+...++.|...+++..|..++.++.. ....|+ ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 345677777788888888888777532 21111 23455666677777888888777776532 222222 24
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 045674 429 FYSSLIDGLGKAGRVDEAEELFEEMVE 455 (650)
Q Consensus 429 ~~~~l~~~~~~~~~~~~A~~~~~~~~~ 455 (650)
.+...+..+...+++.+|...|.++..
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 456667777777888777777766654
No 255
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=90.01 E-value=0.0011 Score=63.84 Aligned_cols=245 Identities=13% Similarity=0.079 Sum_probs=142.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 045674 147 LECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNG 226 (650)
Q Consensus 147 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 226 (650)
+.+|..++.+....|+..+|++-|-+.. |+..|..++....+.|.+++.+.++...++..- +...=+.|+-+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA~------Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~a 125 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKAD------DPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFA 125 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCCS------CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhCC------ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHH
Confidence 3456666666666666666655442221 344456666666666666666666665554422 22233455566
Q ss_pred HHhcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhC--------------------CCCCC
Q 045674 227 LVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEAR--------------------NVQPD 286 (650)
Q Consensus 227 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------------------~~~~~ 286 (650)
|.+.+++.+-++++. .||..-...+.+-|...|.++.|.-+|..+... .-.-+
T Consensus 126 yAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns 198 (624)
T 3lvg_A 126 LAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANS 198 (624)
T ss_dssp HHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCS
T ss_pred HHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 666666544322221 344444555555555555555555554433110 01236
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 045674 287 KITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDS 366 (650)
Q Consensus 287 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 366 (650)
..||..+..+|...+.+.-|.-.--.++-.. .-...++..|-..|.+++-+.+++..+.. -......|+-|+-.
T Consensus 199 ~ktWKeV~~ACvd~~EfrLAqicGLniIvha-----deL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaIL 272 (624)
T 3lvg_A 199 TRTWKEVCFACVDGKEFRLAQMCGLHIVVHA-----DELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAIL 272 (624)
T ss_dssp SCSHHHHTHHHHHSCTTTTTTHHHHHHHCCS-----SCCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCchHHHHHHHhcchhcccH-----HHHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHH
Confidence 6789999999999998887765544444321 12334566788899999999999988743 23467788888888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCC-------CHHhHHHHHHHHHhcCCHHHHHH
Q 045674 367 YAKLGSMNEAINIFERMKYEGVEP-------DEVTYGVIISGLCKNERLEEAMQ 413 (650)
Q Consensus 367 ~~~~~~~~~A~~~~~~~~~~~~~p-------~~~~~~~l~~~~~~~g~~~~a~~ 413 (650)
|++- ++++.++.++..-.+=-.| ....|.-++-.|++-.+++.|..
T Consensus 273 YsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 273 YSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 8765 4666666655433210011 23456667777777777776643
No 256
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=88.72 E-value=17 Score=34.81 Aligned_cols=166 Identities=10% Similarity=-0.064 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC---CHHhHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHHH--
Q 045674 358 AIYTALIDSYAKLGSMNEAINIFERMKYE-GVEP---DEVTYGVIISGLCKN-ERLEEAMQYFEFCRANGVAVNAMFY-- 430 (650)
Q Consensus 358 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~p---~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~-- 430 (650)
.....|+..|.+.|+.++..+++.....- +.-+ .......++..+... +..+.-.++..+..+-.-. +..+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~flr 98 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 44556888888888888888888776431 0011 122344555555443 3333333333333221000 11111
Q ss_pred ----HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCHHH
Q 045674 431 ----SSLIDGLGKAGRVDEAEELFEEMVEKGCPRD-----SYCYNVLIDALAKCGKLDEALALFKRMEDE--GCDQTVYT 499 (650)
Q Consensus 431 ----~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~ 499 (650)
..++..|...|++.+|.+++..+.+.--..| ..++..-+..|...+++.++...+...... .+.+++..
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 1456666667777777666666665311111 123344455566666666666666655432 11122221
Q ss_pred HH----HHHHHHH-hcCCHHHHHHHHHHHH
Q 045674 500 YT----ILINGMF-KEHRNEEALKLWDMMI 524 (650)
Q Consensus 500 ~~----~l~~~~~-~~~~~~~A~~~~~~~~ 524 (650)
-. .-+..+. ..++|.+|...|-+..
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 11 1122234 4566666666655543
No 257
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=88.61 E-value=6.5 Score=33.24 Aligned_cols=73 Identities=14% Similarity=0.010 Sum_probs=51.3
Q ss_pred CCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHhhCCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 045674 528 ITPTAASFRALSIGLCL--SGKVARACKILDELAPKGII--PETAFEDMITCLCKTGRIKEACKLADGIVDREREIP 600 (650)
Q Consensus 528 ~~p~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 600 (650)
..-|...+..-+...-. .++..++.++|..+...++. -...|...+..+...|++++|.++|+..++.+-.|-
T Consensus 73 YkND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 73 YRNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp GTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccCCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 34455544333332222 45577888888888876655 677888888888888999999999998888776663
No 258
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=87.27 E-value=5.8 Score=44.79 Aligned_cols=145 Identities=19% Similarity=0.131 Sum_probs=72.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----------------
Q 045674 432 SLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCD----------------- 494 (650)
Q Consensus 432 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----------------- 494 (650)
.++..+...+..+-+.++..- ++.++.....++.+|...|++++|...|++.... +.
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~-~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLV-LYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCS-CTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhh-hcccchhhhhhcccccccc
Confidence 345556666666655543322 2445555566777777788888888777765211 10
Q ss_pred ------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 045674 495 ------QTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTA----ASFRALSIGLCLSGKVARACKILDELAPKGII 564 (650)
Q Consensus 495 ------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 564 (650)
.-..-|..++..+.+.+.++.+.++-+.+++.....+. ..|..+...+...|++++|...+-.+.....
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~- 969 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL- 969 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS-
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH-
Confidence 01122344444455555555555555555432111111 1234444555555555555555544443211
Q ss_pred cHHHHHHHHHHHHHcCCHH
Q 045674 565 PETAFEDMITCLCKTGRIK 583 (650)
Q Consensus 565 ~~~~~~~l~~~~~~~g~~~ 583 (650)
-...+..|+..+|..|..+
T Consensus 970 r~~cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 970 KKSCLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp CHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHhCCChh
Confidence 2344455555555555433
No 259
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=86.57 E-value=1.9 Score=38.35 Aligned_cols=57 Identities=16% Similarity=0.113 Sum_probs=51.0
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 045674 540 IGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDRE 596 (650)
Q Consensus 540 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 596 (650)
..+.+.|+.++|+..+...++..|.|...-..+.+.||-.|+++.|.+-++.+.+.+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~ 61 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF 61 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 345678999999999999999999999999999999999999999999999988875
No 260
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=84.56 E-value=11 Score=31.99 Aligned_cols=73 Identities=10% Similarity=-0.035 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCChhhhhhh
Q 045674 568 AFEDMITCLCKTGRIKEACKLADGIVDREREI-PGKIRTALINALRKAGNADLAIKLMHSKIGVGYDRMGSIKRR 641 (650)
Q Consensus 568 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 641 (650)
+|..++..+ ..+...++.++|..+...++-. -+..|...+..+-..|++++|.++|+..++.+-.|...+.+.
T Consensus 82 lWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~rL~~~ 155 (202)
T 3esl_A 82 IWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYNRLLRS 155 (202)
T ss_dssp HHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHH
T ss_pred HHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHH
Confidence 444444433 2445789999999998887554 466778899999999999999999999999999997776654
No 261
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=83.63 E-value=8.1 Score=28.27 Aligned_cols=49 Identities=18% Similarity=0.127 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 045674 513 NEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPK 561 (650)
Q Consensus 513 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 561 (650)
.=+..+-++.+....+.|++.+..+.+++|.+.+++.-|.++++.+..+
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3445555555555566666666666666666666666666666666643
No 262
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=83.53 E-value=16 Score=29.36 Aligned_cols=51 Identities=14% Similarity=0.155 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhhCCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 045674 549 ARACKILDELAPKGII--PETAFEDMITCLCKTGRIKEACKLADGIVDREREI 599 (650)
Q Consensus 549 ~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 599 (650)
+++.++|..+..+++. -...|...+..+...|++++|.++|+..++.+-.|
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3477788888776665 66777788888888888888888888888776555
No 263
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=82.85 E-value=30 Score=32.12 Aligned_cols=111 Identities=14% Similarity=0.111 Sum_probs=54.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHH----HHHHHCCCCCCHHhHHHHHH
Q 045674 325 YNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIF----ERMKYEGVEPDEVTYGVIIS 400 (650)
Q Consensus 325 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~----~~~~~~~~~p~~~~~~~l~~ 400 (650)
|.++..-|.+.+++++|.+++..... .+.+.|+...|.++- +-..+.++++|......++.
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~GA~---------------~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~ 102 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASVSQ---------------TLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLG 102 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 44455557777777777776543322 233445554443333 33444566667666666666
Q ss_pred HHHhcCCHHH-HHHHHHHHH----HC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 045674 401 GLCKNERLEE-AMQYFEFCR----AN--GVAVNAMFYSSLIDGLGKAGRVDEAEELF 450 (650)
Q Consensus 401 ~~~~~g~~~~-a~~~~~~~~----~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 450 (650)
.+.....-+- =..+++.++ +. ...-+......+...|.+.+++.+|...|
T Consensus 103 L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 103 CLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 5554432111 111112111 11 12234455555555566555555555544
No 264
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=81.80 E-value=7 Score=28.39 Aligned_cols=80 Identities=14% Similarity=0.072 Sum_probs=48.7
Q ss_pred CCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 045674 124 SKRPNVGLRLFTWAARQKKYSHNLECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELLW 203 (650)
Q Consensus 124 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 203 (650)
..+.++|..+.+|....+. ...+-..-+..+...|++++|..+.+.+- .||...|.+|.. .+.|..+++..
T Consensus 19 ~H~HqEA~tIAdwL~~~~~---~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~ 89 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERLGQ---DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDR 89 (115)
T ss_dssp TTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHH
Confidence 4567888888888877642 11122233445667777777776655433 556666665554 35677777776
Q ss_pred HHHHHHHCC
Q 045674 204 VWRSMKENG 212 (650)
Q Consensus 204 ~~~~~~~~~ 212 (650)
.+.++...|
T Consensus 90 rL~~la~sg 98 (115)
T 2uwj_G 90 RLAGLGGSS 98 (115)
T ss_dssp HHHHHHTCS
T ss_pred HHHHHHhCC
Confidence 666666654
No 265
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=81.00 E-value=54 Score=33.76 Aligned_cols=201 Identities=9% Similarity=0.011 Sum_probs=115.9
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHhH----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 045674 371 GSMNEAINIFERMKYEGVEPDEVTY----GVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEA 446 (650)
Q Consensus 371 ~~~~~A~~~~~~~~~~~~~p~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 446 (650)
.+.+.|...+....... ..+.... ..+...+...+...++...+........ +.....-.+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ--STSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC--CHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCC--ChHHHHHHHHHHHHCCCHHHH
Confidence 47889999998886532 1232222 2222233334435566677766554432 333344445555677999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045674 447 EELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDK 526 (650)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 526 (650)
...|+.|.... ........-++.++...|+.++|..+|+.+.+. .+ .|..+. ..+.|..-.. .-.
T Consensus 305 ~~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~---~~--fYg~lA--a~~Lg~~~~~-------~~~ 369 (618)
T 1qsa_A 305 NTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG--FYPMVA--AQRIGEEYEL-------KID 369 (618)
T ss_dssp HHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS--HHHHHH--HHHTTCCCCC-------CCC
T ss_pred HHHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CC--hHHHHH--HHHcCCCCCC-------CCC
Confidence 99998876532 234555677788888899999999999988752 12 233322 1233321000 000
Q ss_pred CCCC---CH---HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 045674 527 GITP---TA---ASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADG 591 (650)
Q Consensus 527 ~~~p---~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 591 (650)
.+.+ .. .....-+..+...|....|...+..+... . +..-...++......|.++.++....+
T Consensus 370 ~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~-~-~~~~~~~la~~a~~~~~~~~~v~~~~~ 438 (618)
T 1qsa_A 370 KAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS-K-SKTEQAQLARYAFNNQWWDLSVQATIA 438 (618)
T ss_dssp CCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT-C-CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc-C-CHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 0111 00 01123345577889999999888887764 2 333344566667778888877765543
No 266
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=80.18 E-value=15 Score=26.89 Aligned_cols=49 Identities=8% Similarity=0.034 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 045674 408 LEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEK 456 (650)
Q Consensus 408 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 456 (650)
.=+..+-++.+...+..|+..+....+.+|.+.+++.-|.++|+-+..+
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3344455555555555556666666666666666666666666555544
No 267
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=79.92 E-value=23 Score=28.86 Aligned_cols=53 Identities=9% Similarity=0.038 Sum_probs=40.8
Q ss_pred HHHHHHHHHhhCCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 045674 550 RACKILDELAPKGII--PETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGK 602 (650)
Q Consensus 550 ~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 602 (650)
++.++|..+...++. -...|...+..+...|++.+|.++|+..++.+-.|-..
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 366778888877665 67778888888888888888888888888877666443
No 268
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.80 E-value=17 Score=35.68 Aligned_cols=63 Identities=8% Similarity=0.111 Sum_probs=47.5
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045674 253 VTYNTMIKGYCKVGKTQKAMEKFRAMEARN--VQPDKITYMTLIQACYLEGDFDSCLSLYHEMDE 315 (650)
Q Consensus 253 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 315 (650)
.++..+...|.+.|++++|.+.|.++.... ...-...+..+++.+...+++..+...+.+...
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~ 196 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNS 196 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 467778888999999999999998887642 222345667778888888888888888877654
No 269
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.57 E-value=20 Score=35.14 Aligned_cols=98 Identities=12% Similarity=0.006 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCCHHH--HH
Q 045674 464 CYNVLIDALAKCGKLDEALALFKRMEDE--GCDQTVYTYTILINGMFKEHRNEEALKLWDMMID---KGITPTAAS--FR 536 (650)
Q Consensus 464 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~p~~~~--~~ 536 (650)
+...++..|.+.|++++|.+.+.++... +...-...+..++..+...+++..+...+.++.. .+..|+... ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 5678999999999999999999999874 2333456677788888899999999999998863 333333322 11
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhC
Q 045674 537 ALSIGLCLSGKVARACKILDELAPK 561 (650)
Q Consensus 537 ~l~~~~~~~g~~~~A~~~~~~~~~~ 561 (650)
..+..+...+++.+|...|-++...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 2233345678999999888877643
No 270
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=78.54 E-value=64 Score=33.20 Aligned_cols=201 Identities=10% Similarity=-0.016 Sum_probs=114.4
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHH----HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 045674 406 ERLEEAMQYFEFCRANGVAVNAMFYSSL----IDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEA 481 (650)
Q Consensus 406 g~~~~a~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 481 (650)
.+.+.|...+........ .+......+ +..+...+...++...+...... ..+.....-.+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHH
Confidence 377889988887765432 233322222 22233344245666666665554 34444444455555677999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 045674 482 LALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPK 561 (650)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 561 (650)
...|+.|...... .....--+..++...|+.++|..+|+.+... .+ .|..++ ..+.|..-. . .....
T Consensus 305 ~~~~~~l~~~~~~-~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~---~~--fYg~lA--a~~Lg~~~~-~----~~~~~ 371 (618)
T 1qsa_A 305 NTWLARLPMEAKE-KDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG--FYPMVA--AQRIGEEYE-L----KIDKA 371 (618)
T ss_dssp HHHHHHSCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS--HHHHHH--HHHTTCCCC-C----CCCCC
T ss_pred HHHHHHccccccc-cHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CC--hHHHHH--HHHcCCCCC-C----CCCCC
Confidence 9999888653222 3333344566777889999999999998752 12 233222 223332100 0 00000
Q ss_pred CCC--c---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 045674 562 GII--P---ETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMH 625 (650)
Q Consensus 562 ~~~--~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 625 (650)
... . .......+..+...|....|...|..+.+. .+..-...++......|.++.++....
T Consensus 372 ~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~a~~~~~~~~~v~~~~ 437 (618)
T 1qsa_A 372 PQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATI 437 (618)
T ss_dssp CSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 000 0 011223456688899999999999988754 234444556666677888887775544
No 271
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=77.18 E-value=19 Score=26.28 Aligned_cols=79 Identities=13% Similarity=0.063 Sum_probs=38.7
Q ss_pred CCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 045674 124 SKRPNVGLRLFTWAARQKKYSHNLECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELLW 203 (650)
Q Consensus 124 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 203 (650)
..+.++|..+.+|....+. ...+-..-+..+...|++++|..+.+.+- .||...|.+|... +.|..+++..
T Consensus 20 ~H~HqEA~tIAdwL~~~~~---~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~--rlGl~s~le~ 90 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKGE---EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCEY--RLGLGSALES 90 (116)
T ss_dssp TTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHHH--HHTCHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHHH--hcccHHHHHH
Confidence 3456677777777665532 11111222333455666666655544332 4455555444432 4455555555
Q ss_pred HHHHHHHC
Q 045674 204 VWRSMKEN 211 (650)
Q Consensus 204 ~~~~~~~~ 211 (650)
.+.++...
T Consensus 91 rL~~la~s 98 (116)
T 2p58_C 91 RLNRLARS 98 (116)
T ss_dssp HHHHHTTC
T ss_pred HHHHHHhC
Confidence 55455444
No 272
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=75.43 E-value=27 Score=27.21 Aligned_cols=48 Identities=8% Similarity=0.043 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 045674 409 EEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEK 456 (650)
Q Consensus 409 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 456 (650)
=+..+-++.+...+..|+..+....+.+|.+.+|+.-|.++|+-+..+
T Consensus 70 wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K 117 (152)
T 2y69_E 70 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 117 (152)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 344455555555566666666666666666666666666666655554
No 273
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=75.33 E-value=18 Score=28.16 Aligned_cols=58 Identities=16% Similarity=0.111 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHH
Q 045674 515 EALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDM 572 (650)
Q Consensus 515 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 572 (650)
+..+-++.+....+.|++.++...+++|-+.+++.-|.++|+-+..+--...++|..+
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~ 128 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYV 128 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHH
Confidence 4444455555556666666666666666666777777776666664422223344443
No 274
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=74.52 E-value=18 Score=26.35 Aligned_cols=51 Identities=14% Similarity=-0.007 Sum_probs=25.3
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCC
Q 045674 191 SFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMFIESSELVFKVMENGK 247 (650)
Q Consensus 191 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~ 247 (650)
.+...|++++|..+.+.+ +.||...|..|. -.+.|..++++..+..+...|
T Consensus 48 SLmNrG~Yq~Al~l~~~~----c~pdlepw~ALc--e~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 48 SLANQGRYQEALAFAHGN----PWPALEPWFALC--EWHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHHTTCHHHHHGGGTTC----CCGGGHHHHHHH--HHHTTCHHHHHHHHHHHHTCS
T ss_pred HHHcchhHHHHHHhcCCC----CCchHHHHHHHH--HHhcccHHHHHHHHHHHHhCC
Confidence 345556666665554433 245555554443 235555555555554444433
No 275
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.86 E-value=23 Score=35.20 Aligned_cols=69 Identities=9% Similarity=0.009 Sum_probs=45.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 045674 496 TVYTYTILINGMFKEHRNEEALKLWDMMIDKGI-TPTA---ASFRALSIGLCLSGKVARACKILDELAPKGII 564 (650)
Q Consensus 496 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 564 (650)
-...+|.++..|...+.++.|..+..+..--.. .++. ..+..++..+.-.+++.+|.+.+..+..+-|.
T Consensus 230 qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~ 302 (523)
T 4b4t_S 230 KAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPH 302 (523)
T ss_dssp HHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSC
T ss_pred hHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 345677888888888888888888887741100 1121 12334566777788888888888888776554
No 276
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=73.40 E-value=90 Score=32.34 Aligned_cols=16 Identities=13% Similarity=-0.056 Sum_probs=12.5
Q ss_pred HHhcCCHHHHHHHHHH
Q 045674 611 LRKAGNADLAIKLMHS 626 (650)
Q Consensus 611 ~~~~g~~~~A~~~~~~ 626 (650)
+.+.|+++.|++.+++
T Consensus 548 ~~~~g~~~~AL~~i~~ 563 (661)
T 2qx5_A 548 LYFNKQWQETLSQMEL 563 (661)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHh
Confidence 4778999998877666
No 277
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=72.39 E-value=24 Score=35.11 Aligned_cols=74 Identities=9% Similarity=-0.030 Sum_probs=43.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Q 045674 503 LINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLC 577 (650)
Q Consensus 503 l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 577 (650)
|+...-....++.|...|.++....+. +...++.|+-.....|+.-+|.-+|-+.+....+-+.+..++...+.
T Consensus 158 LGDL~RY~~~~~~A~~~Y~~A~~~~P~-~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 158 LGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhCCC-CCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence 333333455566777777777765443 55567777666666677666666666665443344455555554443
No 278
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=71.89 E-value=35 Score=27.76 Aligned_cols=60 Identities=7% Similarity=0.053 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCChhhhhhhh
Q 045674 583 KEACKLADGIVDREREI-PGKIRTALINALRKAGNADLAIKLMHSKIGVGYDRMGSIKRRV 642 (650)
Q Consensus 583 ~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 642 (650)
+++.++|..+...++-. -+..|...+..+-..|++.+|.++|+..++.+-.|...+....
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L~~~~ 137 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLERLQSQH 137 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 44778899998876554 3667788899999999999999999999999999987776543
No 279
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=69.75 E-value=41 Score=26.94 Aligned_cols=51 Identities=16% Similarity=0.105 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC
Q 045674 165 RVRLVFNELKEKGFLMT-VSAANSLIKSFGGLGMVEELLWVWRSMKENGIEP 215 (650)
Q Consensus 165 ~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 215 (650)
++..+|..|..+|+... ...|..-+..+-..|++++|.++|+.-++.+-.|
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 36666666666654433 3345555666666677777777777666665554
No 280
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=69.34 E-value=82 Score=30.18 Aligned_cols=223 Identities=8% Similarity=-0.085 Sum_probs=101.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC--CCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCHHHH----
Q 045674 397 VIISGLCKNERLEEAMQYFEFCRAN--GVA---VNAMFYSSLIDGLGKAGRVDEAEELFEEMVEK--GCPRDSYCY---- 465 (650)
Q Consensus 397 ~l~~~~~~~g~~~~a~~~~~~~~~~--~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~---- 465 (650)
.++..|...|++.+|.+++..+.+. ... .-..++...+..|...+++.++...+...... .+.+++.+.
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 3555566666666666666555442 111 11234555566677777777777777666542 122333322
Q ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHH-HHHHCCCCCCHHHHHH
Q 045674 466 NVLIDALA-KCGKLDEALALFKRMEDEGCDQT------VYTYTILINGMFKEHRNEEALKLWD-MMIDKGITPTAASFRA 537 (650)
Q Consensus 466 ~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~-~~~~~~~~p~~~~~~~ 537 (650)
..-+..+. ..++|..|...|-+..+.-.... ...|..|. + .-.++..+...++. +....-..|....+..
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~-a-Ll~~~r~el~~~l~~~~~~~~~~pei~~l~~ 261 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLC-K-IMLGQSDDVNQLVSGKLAITYSGRDIDAMKS 261 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-H-HHTTCGGGHHHHHHSHHHHTTCSHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHH-H-HHcCCHHHHHHHhccccccccCCccHHHHHH
Confidence 12233355 57777777776655532100111 11222221 1 22233222222221 2111112344455555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 045674 538 LSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNA 617 (650)
Q Consensus 538 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 617 (650)
++.++ ..+++.+...+++.....-..|+....++-..+.+. . ...+.++.+ +-....+..++..+. . ..
T Consensus 262 L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~I--r---~~~L~~i~~---pYsrIsl~~iA~~l~-l-s~ 330 (394)
T 3txn_A 262 VAEAS-HKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTM--L---EQNLCRIIE---PYSRVQVAHVAESIQ-L-PM 330 (394)
T ss_dssp HHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHH--H---HHHHHHHHT---TCSEEEHHHHHHHHT-C-CH
T ss_pred HHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHH--H---HHHHHHHhH---hhceeeHHHHHHHHC-c-CH
Confidence 55554 457777766666665432222443222221111100 0 111222221 223344445554432 2 67
Q ss_pred HHHHHHHHHHHHCCC
Q 045674 618 DLAIKLMHSKIGVGY 632 (650)
Q Consensus 618 ~~A~~~~~~~~~~~~ 632 (650)
+++...+-+++..|.
T Consensus 331 ~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 331 PQVEKKLSQMILDKK 345 (394)
T ss_dssp HHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHCCC
Confidence 788888888877654
No 281
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=67.15 E-value=34 Score=24.97 Aligned_cols=48 Identities=13% Similarity=0.129 Sum_probs=19.8
Q ss_pred HHhcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 045674 227 LVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEA 280 (650)
Q Consensus 227 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 280 (650)
+...|++++|..+.+... .||...|..|.. .+.|--+++...+.++..
T Consensus 50 LmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 50 LMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp HHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 344444444444443332 344444443322 233444444444444433
No 282
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=64.56 E-value=32 Score=29.60 Aligned_cols=51 Identities=12% Similarity=0.087 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhhCCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 045674 549 ARACKILDELAPKGII--PETAFEDMITCLCKTGRIKEACKLADGIVDREREI 599 (650)
Q Consensus 549 ~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 599 (650)
+++.++|..+...++. -...|...+..+...|++++|.++|+..++.+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 5677788888877665 67778888888888899999999998888877566
No 283
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=61.06 E-value=27 Score=34.66 Aligned_cols=63 Identities=10% Similarity=0.025 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 045674 533 ASFRALSIGLCLSGKVARACKILDELAPKG--IIP---ETAFEDMITCLCKTGRIKEACKLADGIVDR 595 (650)
Q Consensus 533 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 595 (650)
..++.+++.|...+.+++|.++..+..--. ..+ ...+..+|..+.-.++|.+|.+.+..+...
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 345666777777777777777777764211 111 123344667777777777777777777654
No 284
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=60.65 E-value=68 Score=26.19 Aligned_cols=25 Identities=16% Similarity=0.127 Sum_probs=14.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 045674 605 TALINALRKAGNADLAIKLMHSKIG 629 (650)
Q Consensus 605 ~~l~~~~~~~g~~~~A~~~~~~~~~ 629 (650)
..++..|...|+.++|+..+..--.
T Consensus 118 ~l~a~lltq~g~r~EaI~y~~~Sf~ 142 (242)
T 3kae_A 118 SLLGDLCTLSGYREEGIGHYVRSFG 142 (242)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHhhhHhhhhcC
Confidence 4455555666666666666554443
No 285
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=55.53 E-value=83 Score=27.12 Aligned_cols=53 Identities=15% Similarity=0.086 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC
Q 045674 164 DRVRLVFNELKEKGFLMT-VSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPS 216 (650)
Q Consensus 164 ~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 216 (650)
+++..+|..|...|+... ...|..-+..+-..|++.+|.++|+.-++.+-.|-
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 466677777777765544 34466677777778888888888888777765553
No 286
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=54.46 E-value=1.1e+02 Score=33.66 Aligned_cols=29 Identities=7% Similarity=-0.056 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 045674 567 TAFEDMITCLCKTGRIKEACKLADGIVDR 595 (650)
Q Consensus 567 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 595 (650)
..|.+++..+.+.+-++-++++.+.+++.
T Consensus 898 ~YY~hV~~LFE~~~a~~~vi~fA~lAI~~ 926 (950)
T 4gq2_M 898 CYYLHLSKKLFEESAYIDALEFSLLADAS 926 (950)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 35667777777777777777777777765
No 287
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=53.76 E-value=46 Score=27.00 Aligned_cols=52 Identities=12% Similarity=0.069 Sum_probs=25.2
Q ss_pred HcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHH----H--HHhcCCHHHHHHHHHHHHH
Q 045674 578 KTGRIKEACKLADGIVDREREI--PGKIRTALIN----A--LRKAGNADLAIKLMHSKIG 629 (650)
Q Consensus 578 ~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~----~--~~~~g~~~~A~~~~~~~~~ 629 (650)
..|++=+|-++++.+-.....+ ....|..|++ + ..+.|+...|..++.++++
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3355555555555555443222 2333443433 1 2334666666666666555
No 288
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=51.30 E-value=1.1e+02 Score=28.19 Aligned_cols=50 Identities=12% Similarity=0.112 Sum_probs=31.4
Q ss_pred CHHHHHHHHHHHhhCCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 045674 547 KVARACKILDELAPKGIIPE---TAFEDMITCLCKTGRIKEACKLADGIVDRE 596 (650)
Q Consensus 547 ~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 596 (650)
+....+++---+..-...+. -++..-+...++.+++..|..+.+++++.+
T Consensus 185 ~~kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~ 237 (325)
T 3mv2_A 185 NTVRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKII 237 (325)
T ss_dssp CHHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 33444444444444444433 234445666788888999888888888775
No 289
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=50.15 E-value=67 Score=35.27 Aligned_cols=137 Identities=12% Similarity=0.058 Sum_probs=80.9
Q ss_pred hHHHHHHHHhccCCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 045674 111 PNFVSFVLRNHDVSKRPNVGLRLFTWAARQKKYSHNLECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIK 190 (650)
Q Consensus 111 ~~~~~~~l~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 190 (650)
++.+..++..+...+.++.|.++..|+ +.++..-..++.+|...|++++|...|+++.. |+..+.....
T Consensus 810 ~~~~~~l~~~L~~~~~~~~a~eL~~~~------~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~---- 878 (950)
T 4gq2_M 810 NDLVTELVEKLFLFKQYNACMQLIGWL------NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFA---- 878 (950)
T ss_dssp CCHHHHHHHHHHHTTCHHHHHHHGGGC------CSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCG----
T ss_pred CccHHHHHHHHHHhcHHHHHHHHHhhc------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCccccc----
Confidence 334444555566677888888777774 34555557899999999999999999988642 2211100000
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCh----hhHHHHHHHHHHcC
Q 045674 191 SFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMFIESSELVFKVMENGKVGPDV----VTYNTMIKGYCKVG 266 (650)
Q Consensus 191 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g 266 (650)
.......++..... ......-|..++..+.+.+.++.+.++-+..++.--..|. ..|..+.++.+..|
T Consensus 879 ------~~~~~~~ll~~~e~--~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 879 ------VLREFQEIAEKYHH--QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp ------GGHHHHHHHHHTTT--CSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred ------chhhhhhccCcccc--cchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 00111112211110 1112336777888888889998888888877753212232 35777777777655
No 290
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=46.83 E-value=63 Score=32.15 Aligned_cols=79 Identities=11% Similarity=-0.065 Sum_probs=67.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 045674 534 SFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRK 613 (650)
Q Consensus 534 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 613 (650)
++..++........++.|..+|.++....|.+...|+.|+......|+.-+|.-.|-+.+-.. .|-+.+...+...+.+
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~-~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcC-CCChhHHHHHHHHHHH
Confidence 456677777777889999999999999999999999999999999999999999988888765 6777788777776654
No 291
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=46.33 E-value=1.7e+02 Score=27.53 Aligned_cols=62 Identities=10% Similarity=0.194 Sum_probs=29.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcC
Q 045674 395 YGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGR--VDEAEELFEEMVEKG 457 (650)
Q Consensus 395 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~ 457 (650)
...++.-|...|+.++|.+.++++...... ...+...+..++-+.++ .+...+++..+...|
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~g 283 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSS 283 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCC
Confidence 455566666666777766666666432211 12223333333333222 334555555555544
No 292
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=45.15 E-value=1.3e+02 Score=26.33 Aligned_cols=89 Identities=11% Similarity=0.034 Sum_probs=40.9
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhC--CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 045674 258 MIKGYCKVGKTQKAMEKFRAMEAR--NVQP----DKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGG 331 (650)
Q Consensus 258 l~~~~~~~g~~~~A~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 331 (650)
-++.+....++++|.+++++..+. +.+. ........+..-.....-.-+..+.+++.. ..........+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHH
Confidence 345666667777777776655431 1111 111112222222222222233333334422 2344445555566
Q ss_pred HHhcCChHHHHHHHHHHH
Q 045674 332 LCKVGKCIEGHAIFESMI 349 (650)
Q Consensus 332 ~~~~g~~~~a~~~~~~~~ 349 (650)
+.+.|+.++|.++|-+..
T Consensus 101 L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHH
Confidence 666676666666665443
No 293
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=44.77 E-value=2.3e+02 Score=27.63 Aligned_cols=120 Identities=15% Similarity=0.168 Sum_probs=78.3
Q ss_pred HHHHHHHhccCCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 045674 113 FVSFVLRNHDVSKRPNVGLRLFTWAARQKKYSHNLECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSF 192 (650)
Q Consensus 113 ~~~~~l~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 192 (650)
++..+... ..+++.|+++..+. +++-..+.|..-.+.+...|++++|.++-..... |+--+..+.+.+-..=
T Consensus 334 ivpyi~~~---l~n~~lA~~lA~R~----~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp 405 (494)
T 1bpo_A 334 IIPYITNV---LQNPDLALRMAVRN----NLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVP 405 (494)
T ss_dssp HHHHHHHT---TCCHHHHHHHHHHT----TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSC
T ss_pred chhhhhhc---cCCHHHHHHHHHhc----CCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCC
Confidence 44455443 36777777766653 4555667788888999999999999998877765 4455666666555544
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 045674 193 GGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMFIESSELVFK 241 (650)
Q Consensus 193 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~ 241 (650)
...|+..-.+.+|..+.+.| ..+..--.-+.+.....|+.+-.++.+.
T Consensus 406 ~~pgq~splL~YF~~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~llekWl~ 453 (494)
T 1bpo_A 406 AQPGQTSPLLQYFGILLDQG-QLNKYESLELCRPVLQQGRKQLLEKWLK 453 (494)
T ss_dssp CCTTSCCHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHhccC-ccchHHhhHHhHHHHhccHHHHHHHHHh
Confidence 45566667777777777775 3455444445555556666655554443
No 294
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=43.07 E-value=2.2e+02 Score=26.79 Aligned_cols=25 Identities=16% Similarity=0.438 Sum_probs=17.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 045674 290 YMTLIQACYLEGDFDSCLSLYHEMD 314 (650)
Q Consensus 290 ~~~l~~~~~~~~~~~~a~~~~~~~~ 314 (650)
...++.-|...++.++|...++++.
T Consensus 57 ~~~ii~EYf~~~d~~Ea~~~l~eL~ 81 (358)
T 3eiq_C 57 LTPIIQEYFEHGDTNEVAEMLRDLN 81 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhC
Confidence 4556777777777777777777654
No 295
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=37.21 E-value=1.1e+02 Score=23.55 Aligned_cols=84 Identities=7% Similarity=0.083 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 045674 395 YGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRV--DEAEELFEEMVEKGCPRDSYCYNVLIDAL 472 (650)
Q Consensus 395 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 472 (650)
...++.-|...|+.++|...++++...... ...+...+..++-+.++- +....++..+...|+-........+...+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~~~Gf~~v~ 88 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIY 88 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHH
Q ss_pred HHcCCHH
Q 045674 473 AKCGKLD 479 (650)
Q Consensus 473 ~~~g~~~ 479 (650)
....+..
T Consensus 89 ~~l~Dl~ 95 (129)
T 2nsz_A 89 NEIPDIN 95 (129)
T ss_dssp HHHHHHH
T ss_pred hhChHhh
No 296
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=36.85 E-value=1.6e+02 Score=23.63 Aligned_cols=51 Identities=18% Similarity=0.176 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc
Q 045674 513 NEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIP 565 (650)
Q Consensus 513 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 565 (650)
.+.+..+++.+.+.|+-.|...-..++....+.|. ....+-.++..+|+..
T Consensus 46 ~~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g~--G~~~I~~eL~~KGI~~ 96 (159)
T 3c1d_A 46 AEDYERVIAWCHEHGYLDDSRFVARFIASRSRKGY--GPARIRQELNQKGISR 96 (159)
T ss_dssp HHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHTTC--CHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHhCCc--cHHHHHHHHHHcCCCH
Confidence 34445555555566555344333444444443331 2334455555555553
No 297
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=36.43 E-value=1.8e+02 Score=25.35 Aligned_cols=28 Identities=18% Similarity=0.339 Sum_probs=17.4
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHH
Q 045674 251 DVVTYNTMIKGYCKVGKTQKAMEKFRAM 278 (650)
Q Consensus 251 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 278 (650)
+.......+..+.+.|+.++|.++|-+.
T Consensus 90 ~~~~~r~~v~~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 90 EIVHLKSGTENMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 3444555556666777777777766554
No 298
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=36.17 E-value=44 Score=23.45 Aligned_cols=19 Identities=16% Similarity=0.328 Sum_probs=14.4
Q ss_pred HHHcCCHHHHHHHHHHHHH
Q 045674 576 LCKTGRIKEACKLADGIVD 594 (650)
Q Consensus 576 ~~~~g~~~~A~~~~~~~~~ 594 (650)
+-+.|++++|+.+|..+++
T Consensus 21 ~D~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 21 ADKEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHH
Confidence 3678888888888877764
No 299
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=35.34 E-value=70 Score=22.81 Aligned_cols=26 Identities=15% Similarity=0.072 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 045674 568 AFEDMITCLCKTGRIKEACKLADGIV 593 (650)
Q Consensus 568 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 593 (650)
.+...++.+.+.|+|++|++..+++.
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 34456666777777777777766553
No 300
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=31.03 E-value=3.2e+02 Score=26.72 Aligned_cols=141 Identities=16% Similarity=0.128 Sum_probs=87.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 045674 475 CGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKI 554 (650)
Q Consensus 475 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 554 (650)
..+.+-|.++.. +.|.+--...|..-...+...|++++|.++--..-. |+--+..|++.+-.+=...|+..--+.+
T Consensus 342 l~n~~lA~~lA~---R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~Y 417 (494)
T 1bpo_A 342 LQNPDLALRMAV---RNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQY 417 (494)
T ss_dssp TCCHHHHHHHHH---HTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHH
T ss_pred cCCHHHHHHHHH---hcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHH
Confidence 466666655543 445554555666667778888999888887665543 3444777776554443445666677888
Q ss_pred HHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 045674 555 LDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSK 627 (650)
Q Consensus 555 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 627 (650)
|..+.+.+.-+..--..+++.-...|+.+-..+.+.+- ....+.+ |++.. +..+...|..+|.++
T Consensus 418 F~~Ll~~g~Ln~~ESlEl~r~vL~q~r~~llekWl~e~---KL~~SEe----LGDlv-k~~d~~LAl~IY~~a 482 (494)
T 1bpo_A 418 FGILLDQGQLNKYESLELCRPVLQQGRKQLLEKWLKED---KLECSEE----LGDLV-KSVDPTLALSVYLRA 482 (494)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHT---CSCCCHH----HHHHH-HHHCSHHHHHHHHHH
T ss_pred HHHHhccCccchHHhhHHhHHHHhccHHHHHHHHHhcC---CccccHH----hHhhh-hhcCHHHHHHHHHHc
Confidence 88888777666555556677777777766555555432 2233333 33332 444667888877765
No 301
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=30.24 E-value=72 Score=22.36 Aligned_cols=17 Identities=24% Similarity=0.173 Sum_probs=9.1
Q ss_pred HHcCCHHHHHHHHHHHH
Q 045674 577 CKTGRIKEACKLADGIV 593 (650)
Q Consensus 577 ~~~g~~~~A~~~~~~~~ 593 (650)
-+.|++++|+.+|..++
T Consensus 30 D~~g~y~eAl~lY~~ai 46 (83)
T 2w2u_A 30 DKEGNAEEAITNYKKAI 46 (83)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHH
Confidence 34555555555555544
No 302
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=29.79 E-value=98 Score=24.79 Aligned_cols=22 Identities=9% Similarity=0.126 Sum_probs=10.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 045674 397 VIISGLCKNERLEEAMQYFEFC 418 (650)
Q Consensus 397 ~l~~~~~~~g~~~~a~~~~~~~ 418 (650)
.++.-|...|+.++|...++++
T Consensus 14 ~lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 14 MLLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHh
Confidence 3444444444444444444444
No 303
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=29.76 E-value=1.9e+02 Score=22.91 Aligned_cols=44 Identities=16% Similarity=0.150 Sum_probs=20.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 045674 293 LIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVG 336 (650)
Q Consensus 293 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 336 (650)
++..+...+..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 32 IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 32 VVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 33344444444455555555555444444444444444444443
No 304
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=28.89 E-value=2.5e+02 Score=23.37 Aligned_cols=16 Identities=13% Similarity=0.279 Sum_probs=5.9
Q ss_pred CHHHHHHHHHHHHcCC
Q 045674 181 TVSAANSLIKSFGGLG 196 (650)
Q Consensus 181 ~~~~~~~l~~~~~~~g 196 (650)
+...-...+..+.+.|
T Consensus 32 ~~~vR~~A~~~L~~~~ 47 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIG 47 (211)
T ss_dssp SHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhC
Confidence 3333333333333333
No 305
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=28.38 E-value=1.9e+02 Score=22.78 Aligned_cols=36 Identities=6% Similarity=-0.009 Sum_probs=14.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 045674 300 EGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKV 335 (650)
Q Consensus 300 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 335 (650)
.+..-.|.++++.+.+.+...+..|...-+..+...
T Consensus 34 ~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~ 69 (145)
T 2fe3_A 34 SMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRES 69 (145)
T ss_dssp CSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHC
Confidence 333344444554444444333433333333333333
No 306
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=27.35 E-value=4.4e+02 Score=25.63 Aligned_cols=20 Identities=10% Similarity=0.164 Sum_probs=10.1
Q ss_pred cCCHHHHHHHHHHHHHCCCC
Q 045674 405 NERLEEAMQYFEFCRANGVA 424 (650)
Q Consensus 405 ~g~~~~a~~~~~~~~~~~~~ 424 (650)
.++.+.|+.++.+|.+.|..
T Consensus 268 gsd~daAl~~la~ml~~Ged 287 (447)
T 3pvs_A 268 GSAPDAALYWYARIITAGGD 287 (447)
T ss_dssp TTCHHHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHcCCC
Confidence 34555555555555555444
No 307
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=27.32 E-value=2e+02 Score=24.49 Aligned_cols=22 Identities=18% Similarity=0.333 Sum_probs=12.1
Q ss_pred HHHhcCChhHHHHHHHHHHHCC
Q 045674 156 CLALCGDVDRVRLVFNELKEKG 177 (650)
Q Consensus 156 ~~~~~g~~~~A~~~~~~~~~~~ 177 (650)
..++.|+.+.+..+++.+.+.+
T Consensus 15 ~A~~~g~~~~v~~Ll~~~~~~~ 36 (241)
T 1k1a_A 15 IAVVQGNLPAVHRLVNLFQQGG 36 (241)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHhcC
Confidence 3445566666666665554443
No 308
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=27.06 E-value=1.9e+02 Score=23.14 Aligned_cols=21 Identities=24% Similarity=0.379 Sum_probs=10.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q 045674 468 LIDALAKCGKLDEALALFKRM 488 (650)
Q Consensus 468 l~~~~~~~g~~~~A~~~~~~~ 488 (650)
++.-|...|+.++|...++++
T Consensus 15 lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 15 LLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHh
Confidence 444444455555555555544
No 309
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=26.91 E-value=3.7e+02 Score=24.57 Aligned_cols=25 Identities=12% Similarity=0.143 Sum_probs=17.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 045674 325 YNLVIGGLCKVGKCIEGHAIFESMI 349 (650)
Q Consensus 325 ~~~l~~~~~~~g~~~~a~~~~~~~~ 349 (650)
...++.-|...|+.++|...++++.
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~ 30 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLN 30 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 3456677777777777777777654
No 310
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=26.70 E-value=2.9e+02 Score=23.28 Aligned_cols=95 Identities=9% Similarity=0.148 Sum_probs=0.0
Q ss_pred HHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCC-----HHHHHHHHHHHHHCCCCCCHHHHH
Q 045674 360 YTALIDSYAKL---GSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNER-----LEEAMQYFEFCRANGVAVNAMFYS 431 (650)
Q Consensus 360 ~~~l~~~~~~~---~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-----~~~a~~~~~~~~~~~~~~~~~~~~ 431 (650)
..-+|.++.+. .+.+.|+-++-+|.+.| .|....-..++.+.-..|. ...|...++.....|.+-......
T Consensus 14 HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i~La 92 (204)
T 2r9g_A 14 HYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLPEARIPLA 92 (204)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTTTTHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHHHHHH
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Q 045674 432 SLIDGLGKAGRVDEAEELFEEMVE 455 (650)
Q Consensus 432 ~l~~~~~~~~~~~~A~~~~~~~~~ 455 (650)
..+..++..-+-..+...++.+.+
T Consensus 93 qaviyLA~aPKSNs~y~A~~~A~~ 116 (204)
T 2r9g_A 93 DVVVDLCLSPKSNSAYMALDAALA 116 (204)
T ss_dssp HHHHHHHHSCCCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCccHHHHHHHHHHHH
No 311
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=26.67 E-value=4.5e+02 Score=25.55 Aligned_cols=48 Identities=13% Similarity=0.113 Sum_probs=28.8
Q ss_pred CHHHHHHHHHHHHHC--------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 045674 407 RLEEAMQYFEFCRAN--------GVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEK 456 (650)
Q Consensus 407 ~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 456 (650)
..++...+++..... +...+......++.. ..|+..++..+++.+...
T Consensus 166 ~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~--~~Gd~R~lln~Le~a~~~ 221 (447)
T 3pvs_A 166 STEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAEL--VNGDARRALNTLEMMADM 221 (447)
T ss_dssp CHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHH--HCSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHh
Confidence 345566666665543 233455666555554 467777777777776654
No 312
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=26.23 E-value=1.2e+02 Score=21.62 Aligned_cols=24 Identities=17% Similarity=0.007 Sum_probs=17.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 045674 535 FRALSIGLCLSGKVARACKILDEL 558 (650)
Q Consensus 535 ~~~l~~~~~~~g~~~~A~~~~~~~ 558 (650)
+.-.+..+.+.|++++|++..+++
T Consensus 18 ~~RrAe~ll~~gkydeAIech~kA 41 (97)
T 2crb_A 18 QSRRADRLLAAGKYEEAISCHRKA 41 (97)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhHHHHHHhcCCHHHHHHHHHHH
Confidence 344567788899999998766554
No 313
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=25.86 E-value=1.3e+02 Score=26.67 Aligned_cols=16 Identities=25% Similarity=0.123 Sum_probs=7.3
Q ss_pred HHHHhcCChhHHHHHH
Q 045674 155 DCLALCGDVDRVRLVF 170 (650)
Q Consensus 155 ~~~~~~g~~~~A~~~~ 170 (650)
...++.|+++....++
T Consensus 10 ~~A~~~g~~~~v~~Ll 25 (285)
T 1wdy_A 10 IKAVQNEDVDLVQQLL 25 (285)
T ss_dssp HHHHHTTCHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHH
Confidence 3344555554444333
No 314
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=24.83 E-value=2.4e+02 Score=28.23 Aligned_cols=46 Identities=9% Similarity=0.215 Sum_probs=22.7
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 045674 442 RVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMED 490 (650)
Q Consensus 442 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 490 (650)
-+.+|+.+|++.... .+.........-|...+-++.|.++.-..-+
T Consensus 50 ~L~eAl~Lf~~va~~---l~l~~L~~~c~~~~~l~~y~GaVeL~L~~A~ 95 (525)
T 3i5p_A 50 HLKNATALLEQIVDD---LSIEKLKEAVSMMLSVNYYPKSIEFLLNIAN 95 (525)
T ss_dssp HHHHHHC-------------CHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 355566666654332 1223334457778888888888887655433
No 315
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=24.10 E-value=2.3e+02 Score=24.88 Aligned_cols=11 Identities=9% Similarity=0.036 Sum_probs=4.7
Q ss_pred HHHHHHHHHCC
Q 045674 412 MQYFEFCRANG 422 (650)
Q Consensus 412 ~~~~~~~~~~~ 422 (650)
.++++.+.+.|
T Consensus 199 ~~i~~~Ll~~g 209 (285)
T 1wdy_A 199 EAITHLLLDHG 209 (285)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHcC
Confidence 34444444444
No 316
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=23.83 E-value=3.1e+02 Score=22.74 Aligned_cols=80 Identities=9% Similarity=-0.068 Sum_probs=37.0
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 045674 145 HNLECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLM 224 (650)
Q Consensus 145 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll 224 (650)
++...-...+..+.+.|.. .+...+..+... ++..+-...+.++...|.. .+...+.++.. .++...-...+
T Consensus 31 ~~~~vR~~A~~~L~~~~~~-~~~~~L~~~l~~---~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~ 102 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDE-RAVEPLIKALKD---EDAWVRRAAADALGQIGDE-RAVEPLIKALK---DEDGWVRQSAA 102 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCG-GGHHHHHHHTTC---SCHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCc-cHHHHHHHHHcC---CCHHHHHHHHHHHHhhCCH-HHHHHHHHHHc---CCCHHHHHHHH
Confidence 3556666666667666663 333444444432 2555545555555554442 22233333322 23444444444
Q ss_pred HHHHhcCC
Q 045674 225 NGLVNSMF 232 (650)
Q Consensus 225 ~~~~~~~~ 232 (650)
.++.+.++
T Consensus 103 ~aL~~~~~ 110 (211)
T 3ltm_A 103 VALGQIGD 110 (211)
T ss_dssp HHHHHHCC
T ss_pred HHHHHhCc
Confidence 44444444
No 317
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=23.68 E-value=3.3e+02 Score=22.88 Aligned_cols=44 Identities=16% Similarity=0.166 Sum_probs=26.9
Q ss_pred HHHHHH---hcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC
Q 045674 363 LIDSYA---KLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNE 406 (650)
Q Consensus 363 l~~~~~---~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 406 (650)
+|.++. +..+.+.|+-++-+|++.|-.|....-..++.+.-..|
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 455543 34678888888888887776665555555554444433
No 318
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=23.47 E-value=2.9e+02 Score=22.21 Aligned_cols=79 Identities=10% Similarity=0.119 Sum_probs=42.9
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHhhCCCC-cHHHHHHHHHHHHHcCCHHHH
Q 045674 508 FKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVA-RACKILDELAPKGII-PETAFEDMITCLCKTGRIKEA 585 (650)
Q Consensus 508 ~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A 585 (650)
.-..++.+++..++...-..+ ....-..|+..|....+.. +..+.+-.-+ .+. ++..+ +-+.+.-.|++++|
T Consensus 19 fl~~dYs~VI~~L~~~~~~~L--p~~~kY~LA~SYI~~e~Ls~eQKenIln~i--tlkSde~yL--~YWIyiGRg~~~eA 92 (161)
T 2ynq_A 19 FLQNKYSDVITTLEDYAPEDM--PYVIQYELASSYVMTESLTEEQRQTVSNNI--TLKTDEQYM--LYWIYIGRSQSEEA 92 (161)
T ss_dssp HTTTCHHHHHHHHTTSCGGGS--CHHHHHHHHHHHHHTSSSCHHHHHHHHHTC--CTTSCHHHH--HHHHHHHHTCHHHH
T ss_pred HHHhhHHHHHHHHhcCChhhC--ChhHHHHHHHHHHHccCCCHHHHHHHHhhC--CccCCHHHH--HHHHHHcCCchHHH
Confidence 346778877777665543222 2333445667777666543 2222222221 122 33333 23456677888888
Q ss_pred HHHHHHH
Q 045674 586 CKLADGI 592 (650)
Q Consensus 586 ~~~~~~~ 592 (650)
+.+.+.+
T Consensus 93 lDiA~~L 99 (161)
T 2ynq_A 93 LELARTI 99 (161)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 8888776
No 319
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=23.13 E-value=1.8e+02 Score=19.78 Aligned_cols=24 Identities=8% Similarity=0.093 Sum_probs=13.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Q 045674 571 DMITCLCKTGRIKEACKLADGIVD 594 (650)
Q Consensus 571 ~l~~~~~~~g~~~~A~~~~~~~~~ 594 (650)
.+|+.+...|++++|...|-+++.
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nAl~ 45 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNAIA 45 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 355555566665555554444444
No 320
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=22.60 E-value=1.7e+02 Score=23.03 Aligned_cols=31 Identities=10% Similarity=-0.031 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 045674 304 DSCLSLYHEMDEKGIEIPSHAYNLVIGGLCK 334 (650)
Q Consensus 304 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 334 (650)
-.|.++++.+.+.+...+..|...-+..+..
T Consensus 34 ~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e 64 (145)
T 3eyy_A 34 ATPDDILGEVRKTASGINISTVYRTLELLEE 64 (145)
T ss_dssp BCHHHHHHHHHTTCTTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhhCCCCCHhHHHHHHHHHHH
Confidence 3444444444444333333333333333333
No 321
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=22.49 E-value=2.9e+02 Score=21.84 Aligned_cols=44 Identities=16% Similarity=0.148 Sum_probs=21.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 045674 433 LIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCG 476 (650)
Q Consensus 433 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 476 (650)
++..+...+..-.|.++++.+.+.+...+..|.+.-+..+...|
T Consensus 32 IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 32 VVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 34444444444455555555555543344444444444444444
No 322
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=22.14 E-value=2e+02 Score=22.31 Aligned_cols=33 Identities=15% Similarity=0.147 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 045674 303 FDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKV 335 (650)
Q Consensus 303 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 335 (650)
.-.|.++++.+.+.+...+..|...-+..+.+.
T Consensus 34 ~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~ 66 (136)
T 1mzb_A 34 HMSAEDVYKALMEAGEDVGLATVYRVLTQFEAA 66 (136)
T ss_dssp SBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHC
Confidence 344445555544444333443333333333333
No 323
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=20.93 E-value=1.6e+02 Score=21.22 Aligned_cols=51 Identities=12% Similarity=0.181 Sum_probs=23.8
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHH
Q 045674 577 CKTGRIKEACKLADGIVDREREIPGKIRTALINA-----LRKAGNADLAIKLMHSKIG 629 (650)
Q Consensus 577 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~g~~~~A~~~~~~~~~ 629 (650)
...|++=+|=++++..-.....+....|..+++. ..+.|+. |..++.++++
T Consensus 12 fn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 12 WRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 3446666665555555544311222333333222 1234555 6666666655
No 324
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=20.66 E-value=4.9e+02 Score=23.84 Aligned_cols=98 Identities=15% Similarity=0.102 Sum_probs=56.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCC----CcH---HHHHHHHHHH---H---------Hc-C-----CHHHHHHHHHHHH
Q 045674 539 SIGLCLSGKVARACKILDELAPKGI----IPE---TAFEDMITCL---C---------KT-G-----RIKEACKLADGIV 593 (650)
Q Consensus 539 ~~~~~~~g~~~~A~~~~~~~~~~~~----~~~---~~~~~l~~~~---~---------~~-g-----~~~~A~~~~~~~~ 593 (650)
+..+...|++++|+..|+.++..=+ .+. .-...++..+ . +. + +.....++.-.+-
T Consensus 109 gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icreYilal~iEl~Rr~l~~~~~~~~kR~lELAAYFT 188 (320)
T 3mkr_B 109 CYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLITICREYIVGLSMETERKKLPKETLEQQKRICEMAAYFT 188 (320)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCSHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHhhheeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchhHHHHHHHHHHhc
Confidence 3345688999999999998875321 121 1111111111 0 11 1 1122334443343
Q ss_pred HcCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCChh
Q 045674 594 DREREIPGK--IRTALINALRKAGNADLAIKLMHSKIGVGYDRMG 636 (650)
Q Consensus 594 ~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 636 (650)
.-+..|... ++.......++.+++.-|-.+.+++++.++.+..
T Consensus 189 ~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~ 233 (320)
T 3mkr_B 189 HSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKPEV 233 (320)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCHHH
T ss_pred cCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHH
Confidence 334444433 3445566688999999999999999999876543
No 325
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=20.63 E-value=3.4e+02 Score=21.92 Aligned_cols=17 Identities=6% Similarity=-0.163 Sum_probs=8.6
Q ss_pred HcCCHHHHHHHHHHHHH
Q 045674 578 KTGRIKEACKLADGIVD 594 (650)
Q Consensus 578 ~~g~~~~A~~~~~~~~~ 594 (650)
+.|+..-|..++++++.
T Consensus 87 ~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 87 DFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHCCHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHH
Confidence 34555555555555543
No 326
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=20.57 E-value=2.5e+02 Score=22.05 Aligned_cols=57 Identities=18% Similarity=0.087 Sum_probs=25.9
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-cHHHHHHHHHHHHHcC
Q 045674 523 MIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGII-PETAFEDMITCLCKTG 580 (650)
Q Consensus 523 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g 580 (650)
+.+.|+..+..=. .++..+...+..-.|.++++.+.+.++. +..+.+.-+..+...|
T Consensus 13 l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 13 LKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 3445555444322 2233333344445566666666555444 3333333334444444
No 327
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=20.17 E-value=1.2e+02 Score=25.43 Aligned_cols=20 Identities=10% Similarity=0.129 Sum_probs=9.1
Q ss_pred HHHhcCCHHHHHHHHHHHhh
Q 045674 541 GLCLSGKVARACKILDELAP 560 (650)
Q Consensus 541 ~~~~~g~~~~A~~~~~~~~~ 560 (650)
.|.+.|.+++|.++|++...
T Consensus 126 VCiekg~Fk~A~eiLkr~f~ 145 (211)
T 3bqo_A 126 VCMENGNFKEAEEVFERIFG 145 (211)
T ss_dssp HHHHTTCHHHHHHHHHHHC-
T ss_pred HHHHccchHHHHHHHHHHhc
Confidence 34444555555555544443
Done!