BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045675
(382 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1RD5|A Chain A, Crystal Structure Of Tryptophan Synthase Alpha Chain
Homolog Bx1: A Member Of The Chemical Plant Defense
System
pdb|1RD5|B Chain B, Crystal Structure Of Tryptophan Synthase Alpha Chain
Homolog Bx1: A Member Of The Chemical Plant Defense
System
Length = 262
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 50/119 (42%), Gaps = 14/119 (11%)
Query: 108 NGLLCLDVSSAFGMAFVLWNPATN---EFKGLPTPSLTESRLKTFWMVSLGFGFNQDTND 164
+GL+ D+ + A LW+ A N E L TP++ E R+K S GF + N
Sbjct: 120 HGLIVPDLP--YVAAHSLWSEAKNNNLELVLLTTPAIPEDRMKEITKASEGFVYLVSVNG 177
Query: 165 YVLVRIVNFQARYDAIAEVYSTSTGKWKEVAAGTGSCVIYGGQDAVAVKGVLHWIANGI 223
R N R +++ + T K VA G +G VK + W A+G+
Sbjct: 178 VTGPR-ANVNPRVESLIQEVKKVTN--KPVAVG------FGISKPEHVKQIAQWGADGV 227
>pdb|3A4L|A Chain A, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3A4L|B Chain B, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3A4M|A Chain A, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3A4M|B Chain B, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3A4N|A Chain A, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3A4N|B Chain B, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3AM1|A Chain A, Crystal Structure Of O-Phosphoseryl-Trna Kinase Complexed
With Anticodon-StemLOOP TRUNCATED TRNA(SEC)
Length = 260
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 12/90 (13%)
Query: 96 GLSTFPKIVGSCNGLLCLDV----SSAFGMAFVLWNPATNEFKGLPTPSLTESRLKTFWM 151
G STF K + +DV S +F +W EF T L +S LK +W+
Sbjct: 16 GKSTFSKNLAKILSKNNIDVIVLGSDLIRESFPVWKEKYEEFIKKSTYRLIDSALKNYWV 75
Query: 152 VSLGFGFNQDTNDYVLVR--IVNFQARYDA 179
+ DTN Y +R ++N +Y+
Sbjct: 76 IV------DDTNYYNSMRRDLINIAKKYNK 99
>pdb|3ADB|A Chain A, Crystal Structure Of O-Phosphoseryl-Trna Kinase Complexed
With Selenocysteine Trna And Amppnp (Crystal Type 1)
pdb|3ADB|B Chain B, Crystal Structure Of O-Phosphoseryl-Trna Kinase Complexed
With Selenocysteine Trna And Amppnp (Crystal Type 1)
pdb|3ADC|A Chain A, Crystal Structure Of O-Phosphoseryl-Trna Kinase Complexed
With Selenocysteine Trna And Amppnp (Crystal Type 2)
pdb|3ADC|B Chain B, Crystal Structure Of O-Phosphoseryl-Trna Kinase Complexed
With Selenocysteine Trna And Amppnp (Crystal Type 2)
pdb|3ADD|A Chain A, Crystal Structure Of O-Phosphoseryl-Trna Kinase Complexed
With Selenocysteine Trna And Amppnp (Crystal Type 3)
pdb|3ADD|B Chain B, Crystal Structure Of O-Phosphoseryl-Trna Kinase Complexed
With Selenocysteine Trna And Amppnp (Crystal Type 3)
Length = 259
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 12/90 (13%)
Query: 96 GLSTFPKIVGSCNGLLCLDV----SSAFGMAFVLWNPATNEFKGLPTPSLTESRLKTFWM 151
G STF K + +DV S +F +W EF T L +S LK +W+
Sbjct: 23 GKSTFSKNLAKILSKNNIDVIVLGSDLIRESFPVWKEKYEEFIKKSTYRLIDSALKNYWV 82
Query: 152 VSLGFGFNQDTNDYVLVR--IVNFQARYDA 179
+ DTN Y R ++N +Y+
Sbjct: 83 IV------DDTNYYNSXRRDLINIAKKYNK 106
>pdb|3HT5|A Chain A, Crystal Structure Of Ilve A Branched Chain Amino Acid
Transaminase From Mycobacterium Tuberculosis
Length = 368
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 34/79 (43%)
Query: 244 RTAMPELPTDCYVKALSYDQSLALAVYPGLGFRSRLSNRFELWVMNEGKGWTRTFNTAFE 303
R A+PELP ++++L ++ A PG G L R ++ G G +
Sbjct: 108 RLAIPELPDAVFIESLRQLIAVDKAWVPGAGGEEALYLRPFIFATEPGLGVRPATQYRYL 167
Query: 304 RIAWPVGSFRDSKIIMKSV 322
IA P G++ I SV
Sbjct: 168 LIASPAGAYFKGGIAPVSV 186
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,699,366
Number of Sequences: 62578
Number of extensions: 498154
Number of successful extensions: 974
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 972
Number of HSP's gapped (non-prelim): 6
length of query: 382
length of database: 14,973,337
effective HSP length: 101
effective length of query: 281
effective length of database: 8,652,959
effective search space: 2431481479
effective search space used: 2431481479
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)