Query 045675
Match_columns 382
No_of_seqs 138 out of 1523
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 04:22:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045675.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045675hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01640 F_box_assoc_1 F-box 100.0 7.8E-33 1.7E-37 243.4 26.4 214 104-333 1-230 (230)
2 PF07734 FBA_1: F-box associat 99.7 8.9E-15 1.9E-19 121.3 17.5 140 209-356 1-164 (164)
3 PLN03215 ascorbic acid mannose 99.6 2.5E-13 5.5E-18 123.9 26.7 297 7-339 2-354 (373)
4 KOG4441 Proteins containing BT 99.6 8.9E-14 1.9E-18 136.6 21.4 218 102-340 326-555 (571)
5 PHA02713 hypothetical protein; 99.6 1.7E-13 3.6E-18 135.1 20.1 222 104-344 299-546 (557)
6 KOG4441 Proteins containing BT 99.5 1.1E-12 2.3E-17 129.0 21.1 237 106-362 282-530 (571)
7 PF08268 FBA_3: F-box associat 99.5 3.2E-13 7E-18 107.3 12.9 106 209-320 1-118 (129)
8 PHA02713 hypothetical protein; 99.5 2.9E-12 6.3E-17 126.3 21.2 221 122-362 273-520 (557)
9 PHA03098 kelch-like protein; P 99.4 2E-11 4.3E-16 120.9 22.4 215 107-340 293-520 (534)
10 PHA02790 Kelch-like protein; P 99.4 2.2E-11 4.8E-16 118.3 20.2 198 107-339 270-478 (480)
11 PLN02153 epithiospecifier prot 99.3 1.1E-09 2.5E-14 102.0 22.4 223 105-339 29-292 (341)
12 TIGR03547 muta_rot_YjhT mutatr 99.3 2.5E-09 5.5E-14 100.0 23.4 242 105-364 14-331 (346)
13 PHA03098 kelch-like protein; P 99.2 8.8E-10 1.9E-14 109.2 19.1 222 122-364 265-497 (534)
14 PLN02193 nitrile-specifier pro 99.2 5E-09 1.1E-13 101.7 20.6 217 106-340 173-419 (470)
15 TIGR03548 mutarot_permut cycli 99.1 1.8E-08 3.9E-13 93.2 23.3 220 122-363 40-312 (323)
16 PRK14131 N-acetylneuraminic ac 99.1 1.3E-08 2.9E-13 96.0 22.6 242 104-363 34-352 (376)
17 PHA02790 Kelch-like protein; P 99.1 6E-09 1.3E-13 101.4 19.4 170 178-364 286-456 (480)
18 PF12937 F-box-like: F-box-lik 99.0 4.5E-10 9.7E-15 72.0 3.4 43 9-51 1-43 (47)
19 PLN02153 epithiospecifier prot 99.0 9.9E-08 2.1E-12 89.0 20.1 189 104-300 81-294 (341)
20 PLN02193 nitrile-specifier pro 98.9 2.4E-07 5.2E-12 90.0 22.5 175 179-363 193-386 (470)
21 PRK14131 N-acetylneuraminic ac 98.8 8.4E-07 1.8E-11 83.8 21.4 152 179-337 189-374 (376)
22 PF00646 F-box: F-box domain; 98.8 1.6E-09 3.5E-14 69.8 1.9 44 9-52 3-46 (48)
23 TIGR03547 muta_rot_YjhT mutatr 98.8 9.4E-07 2E-11 82.7 19.8 137 179-322 168-329 (346)
24 smart00256 FBOX A Receptor for 98.8 4.4E-09 9.5E-14 65.3 2.6 39 12-50 1-39 (41)
25 TIGR03548 mutarot_permut cycli 98.7 1.7E-06 3.7E-11 80.1 19.8 151 105-271 69-232 (323)
26 KOG4693 Uncharacterized conser 98.4 1.1E-05 2.5E-10 69.1 14.3 221 120-361 104-352 (392)
27 KOG4693 Uncharacterized conser 98.4 5.9E-06 1.3E-10 70.8 12.4 211 120-343 43-288 (392)
28 KOG1230 Protein containing rep 98.2 0.00016 3.5E-09 65.9 16.9 211 120-341 97-350 (521)
29 KOG0379 Kelch repeat-containin 97.6 0.0029 6.3E-08 61.7 16.8 201 122-340 89-310 (482)
30 KOG0281 Beta-TrCP (transducin 97.6 0.0016 3.4E-08 58.2 12.8 44 9-52 75-122 (499)
31 KOG0379 Kelch repeat-containin 97.5 0.0026 5.7E-08 62.0 14.9 167 121-301 139-312 (482)
32 KOG2120 SCF ubiquitin ligase, 97.5 7.3E-05 1.6E-09 65.7 2.9 44 5-48 94-137 (419)
33 KOG1230 Protein containing rep 97.3 0.049 1.1E-06 50.3 18.4 146 180-332 99-276 (521)
34 PF13964 Kelch_6: Kelch motif 97.0 0.002 4.3E-08 41.5 5.3 43 207-249 5-48 (50)
35 PF01344 Kelch_1: Kelch motif; 96.6 0.0068 1.5E-07 38.2 5.2 42 207-248 5-47 (47)
36 PF02191 OLF: Olfactomedin-lik 96.5 0.47 1E-05 42.0 17.9 122 205-341 70-213 (250)
37 KOG2997 F-box protein FBX9 [Ge 96.4 0.0019 4.2E-08 57.2 2.6 46 9-54 107-157 (366)
38 COG3055 Uncharacterized protei 95.8 0.17 3.7E-06 46.0 11.4 178 180-367 114-362 (381)
39 PF07646 Kelch_2: Kelch motif; 95.7 0.033 7.2E-07 35.5 5.1 41 207-247 5-47 (49)
40 smart00284 OLF Olfactomedin-li 95.7 1.3 2.9E-05 39.0 16.5 120 207-341 77-218 (255)
41 PF08450 SGL: SMP-30/Gluconola 95.5 1.6 3.5E-05 38.4 21.3 202 105-341 8-223 (246)
42 PF07762 DUF1618: Protein of u 94.8 0.27 5.8E-06 38.8 8.8 75 231-305 7-101 (131)
43 PF13964 Kelch_6: Kelch motif 94.6 0.08 1.7E-06 33.8 4.4 37 105-141 8-48 (50)
44 KOG4152 Host cell transcriptio 94.6 1.1 2.5E-05 42.7 13.4 162 120-298 56-246 (830)
45 PF07250 Glyoxal_oxid_N: Glyox 94.4 0.99 2.1E-05 39.6 11.9 163 180-362 47-226 (243)
46 KOG2055 WD40 repeat protein [G 94.3 1.7 3.6E-05 41.0 13.7 141 178-338 234-381 (514)
47 PF02897 Peptidase_S9_N: Proly 94.3 5.2 0.00011 38.3 19.5 144 179-339 252-412 (414)
48 PF13418 Kelch_4: Galactose ox 94.3 0.097 2.1E-06 33.2 4.3 39 207-245 5-44 (49)
49 PF13360 PQQ_2: PQQ-like domai 93.9 4 8.6E-05 35.4 17.8 188 107-337 35-236 (238)
50 PF06433 Me-amine-dh_H: Methyl 93.7 1.1 2.4E-05 41.1 11.3 122 208-338 188-327 (342)
51 COG4946 Uncharacterized protei 93.2 8 0.00017 36.9 18.5 97 230-339 382-485 (668)
52 PF10282 Lactonase: Lactonase, 93.0 7.8 0.00017 36.1 24.4 166 152-339 145-332 (345)
53 KOG0274 Cdc4 and related F-box 92.9 11 0.00023 37.6 19.1 45 7-51 106-150 (537)
54 COG2706 3-carboxymuconate cycl 92.9 7.3 0.00016 35.7 15.4 116 213-341 155-286 (346)
55 smart00612 Kelch Kelch domain. 92.8 0.21 4.5E-06 30.9 3.9 33 179-214 15-47 (47)
56 PF13360 PQQ_2: PQQ-like domai 92.1 7.3 0.00016 33.7 16.9 134 180-337 4-146 (238)
57 TIGR01640 F_box_assoc_1 F-box 92.1 4.5 9.8E-05 35.1 12.8 137 211-360 3-159 (230)
58 PF07893 DUF1668: Protein of u 92.0 8.5 0.00018 35.9 15.1 147 103-271 71-252 (342)
59 smart00612 Kelch Kelch domain. 92.0 0.5 1.1E-05 29.1 4.9 44 216-262 2-46 (47)
60 COG4257 Vgb Streptogramin lyas 91.7 4 8.6E-05 36.2 11.4 123 103-251 194-318 (353)
61 PF10282 Lactonase: Lactonase, 91.6 7.7 0.00017 36.1 14.5 115 213-340 154-286 (345)
62 KOG4341 F-box protein containi 90.5 0.18 3.8E-06 47.1 2.3 39 7-45 70-108 (483)
63 PF05096 Glu_cyclase_2: Glutam 90.4 12 0.00027 33.2 16.8 135 178-338 67-210 (264)
64 PF13415 Kelch_3: Galactose ox 89.7 1.4 3.1E-05 27.8 5.5 39 213-251 1-41 (49)
65 PF01344 Kelch_1: Kelch motif; 89.3 0.32 6.8E-06 30.4 2.2 35 163-197 12-46 (47)
66 KOG3545 Olfactomedin and relat 89.2 12 0.00026 32.7 12.2 120 207-341 71-212 (249)
67 COG2706 3-carboxymuconate cycl 89.0 18 0.0004 33.1 17.8 148 179-340 167-332 (346)
68 PF08450 SGL: SMP-30/Gluconola 88.5 16 0.00035 31.9 15.1 107 208-338 4-129 (246)
69 PLN02772 guanylate kinase 88.5 3.5 7.5E-05 38.9 9.1 76 207-290 28-107 (398)
70 PRK11138 outer membrane biogen 88.4 11 0.00024 35.7 13.1 107 208-337 64-184 (394)
71 PRK04043 tolB translocation pr 87.5 28 0.0006 33.5 23.0 191 120-341 212-410 (419)
72 PRK11138 outer membrane biogen 87.0 28 0.00061 33.0 20.2 133 179-336 170-317 (394)
73 TIGR03866 PQQ_ABC_repeats PQQ- 86.6 22 0.00048 31.5 21.2 176 120-335 10-191 (300)
74 TIGR03300 assembly_YfgL outer 85.9 19 0.0004 33.9 13.0 104 208-337 60-169 (377)
75 PF07893 DUF1668: Protein of u 85.6 18 0.0004 33.7 12.4 86 180-271 200-297 (342)
76 TIGR02658 TTQ_MADH_Hv methylam 85.2 33 0.00071 32.1 24.4 204 103-338 110-338 (352)
77 PRK11028 6-phosphogluconolacto 84.7 32 0.00069 31.6 22.4 117 211-339 183-314 (330)
78 COG1520 FOG: WD40-like repeat 84.5 29 0.00062 32.7 13.5 136 180-338 36-178 (370)
79 KOG2437 Muskelin [Signal trans 84.2 1.4 3E-05 42.1 4.2 143 125-271 233-394 (723)
80 KOG0310 Conserved WD40 repeat- 83.6 43 0.00093 32.1 14.8 159 180-365 49-218 (487)
81 cd01207 Ena-Vasp Enabled-VASP- 83.5 4.4 9.5E-05 30.8 5.9 44 121-172 9-52 (111)
82 TIGR03074 PQQ_membr_DH membran 81.9 41 0.00089 35.1 14.1 31 207-244 188-220 (764)
83 PF13415 Kelch_3: Galactose ox 81.8 2.2 4.7E-05 26.9 3.3 25 178-202 18-42 (49)
84 cd01206 Homer Homer type EVH1 80.9 4.6 0.0001 30.2 5.0 41 120-171 10-51 (111)
85 PF13418 Kelch_4: Galactose ox 80.4 2.6 5.5E-05 26.4 3.2 35 164-198 14-48 (49)
86 TIGR03075 PQQ_enz_alc_DH PQQ-d 79.8 40 0.00088 33.5 12.9 112 207-338 63-196 (527)
87 PF07646 Kelch_2: Kelch motif; 79.5 4.9 0.00011 25.2 4.4 44 255-300 4-48 (49)
88 PRK11028 6-phosphogluconolacto 78.1 56 0.0012 30.0 18.7 144 179-338 57-214 (330)
89 PRK04792 tolB translocation pr 77.7 71 0.0015 31.0 20.3 188 120-341 241-435 (448)
90 KOG0289 mRNA splicing factor [ 76.3 72 0.0016 30.3 12.3 114 208-339 353-470 (506)
91 COG4257 Vgb Streptogramin lyas 76.0 59 0.0013 29.2 15.8 217 106-341 70-315 (353)
92 PRK05137 tolB translocation pr 76.0 77 0.0017 30.5 21.4 186 120-339 225-420 (435)
93 TIGR03300 assembly_YfgL outer 75.3 73 0.0016 29.9 22.1 135 179-336 155-302 (377)
94 KOG0299 U3 snoRNP-associated p 74.9 80 0.0017 30.2 17.4 198 101-322 206-445 (479)
95 PF05096 Glu_cyclase_2: Glutam 73.9 65 0.0014 28.7 15.4 106 212-336 54-162 (264)
96 PRK00178 tolB translocation pr 73.7 87 0.0019 30.0 21.5 186 120-340 222-415 (430)
97 KOG0286 G-protein beta subunit 73.1 71 0.0015 28.8 17.6 178 120-335 76-263 (343)
98 KOG0316 Conserved WD40 repeat- 71.3 70 0.0015 27.9 15.5 181 108-335 28-217 (307)
99 KOG2437 Muskelin [Signal trans 70.8 7.3 0.00016 37.5 4.7 145 188-339 238-420 (723)
100 PF13570 PQQ_3: PQQ-like domai 69.2 9.2 0.0002 22.7 3.5 25 208-239 16-40 (40)
101 KOG0301 Phospholipase A2-activ 66.8 1.2E+02 0.0026 30.7 12.1 84 230-329 200-286 (745)
102 PF12458 DUF3686: ATPase invol 65.2 67 0.0015 30.6 9.6 142 108-289 238-384 (448)
103 PF14583 Pectate_lyase22: Olig 64.7 86 0.0019 29.6 10.4 104 228-338 166-279 (386)
104 TIGR03866 PQQ_ABC_repeats PQQ- 63.6 1E+02 0.0023 27.0 21.5 115 212-341 166-290 (300)
105 KOG0647 mRNA export protein (c 63.4 50 0.0011 29.8 8.0 63 280-343 49-114 (347)
106 TIGR02800 propeller_TolB tol-p 62.1 1.4E+02 0.0031 28.2 21.3 186 121-340 214-406 (417)
107 PRK05137 tolB translocation pr 61.6 1.6E+02 0.0034 28.4 23.1 185 120-338 181-373 (435)
108 COG3055 Uncharacterized protei 61.6 1.4E+02 0.003 27.8 15.8 139 179-322 196-357 (381)
109 PF13013 F-box-like_2: F-box-l 60.1 7.5 0.00016 29.4 2.2 30 8-37 21-50 (109)
110 KOG2502 Tub family proteins [G 59.8 5.9 0.00013 36.2 1.8 38 7-44 43-88 (355)
111 PRK04043 tolB translocation pr 59.0 1.7E+02 0.0038 28.1 12.7 99 230-340 213-318 (419)
112 PF13854 Kelch_5: Kelch motif 58.4 26 0.00057 21.0 4.1 33 207-239 8-41 (42)
113 PF14583 Pectate_lyase22: Olig 58.3 1.7E+02 0.0037 27.7 12.0 59 324-382 169-227 (386)
114 smart00564 PQQ beta-propeller 57.0 32 0.00069 19.0 4.5 26 210-242 3-28 (33)
115 COG4946 Uncharacterized protei 56.9 1.9E+02 0.0042 28.0 12.6 138 180-339 288-439 (668)
116 COG3386 Gluconolactonase [Carb 56.0 1.7E+02 0.0036 26.9 12.6 105 214-338 37-158 (307)
117 PF03088 Str_synth: Strictosid 55.0 30 0.00066 25.1 4.6 16 324-339 38-53 (89)
118 cd00216 PQQ_DH Dehydrogenases 54.3 1.7E+02 0.0037 28.8 11.2 31 207-244 55-87 (488)
119 KOG1273 WD40 repeat protein [G 53.8 1.8E+02 0.0039 26.7 15.8 124 229-361 174-312 (405)
120 KOG4152 Host cell transcriptio 53.2 2.3E+02 0.0051 27.8 11.3 89 178-271 229-341 (830)
121 PRK04922 tolB translocation pr 52.7 2.2E+02 0.0048 27.4 22.0 187 120-340 227-420 (433)
122 PRK04922 tolB translocation pr 52.2 2.2E+02 0.0049 27.3 20.0 143 178-339 227-376 (433)
123 PLN00181 protein SPA1-RELATED; 51.7 3.1E+02 0.0068 28.8 23.1 175 120-334 554-741 (793)
124 KOG0283 WD40 repeat-containing 51.5 1.3E+02 0.0029 30.8 9.7 99 106-223 378-482 (712)
125 PRK04792 tolB translocation pr 50.1 2.5E+02 0.0054 27.2 20.6 142 179-339 242-390 (448)
126 PF08268 FBA_3: F-box associat 50.1 55 0.0012 25.4 5.8 54 311-364 2-64 (129)
127 PRK03629 tolB translocation pr 49.0 2.5E+02 0.0055 27.0 21.5 186 120-339 178-371 (429)
128 TIGR02658 TTQ_MADH_Hv methylam 48.7 2.3E+02 0.0051 26.5 12.4 104 231-342 28-148 (352)
129 PF01011 PQQ: PQQ enzyme repea 48.5 35 0.00076 19.9 3.4 23 316-338 2-25 (38)
130 PF03178 CPSF_A: CPSF A subuni 47.9 2.2E+02 0.0048 26.0 12.6 98 230-341 62-169 (321)
131 PRK01742 tolB translocation pr 47.8 2.6E+02 0.0057 26.8 19.6 183 121-338 184-368 (429)
132 KOG2321 WD40 repeat protein [G 45.4 1.8E+02 0.0039 29.0 9.2 103 215-338 147-265 (703)
133 PTZ00421 coronin; Provisional 44.4 3.3E+02 0.007 26.9 23.9 160 154-337 129-296 (493)
134 KOG0300 WD40 repeat-containing 43.8 1.7E+02 0.0036 26.8 8.2 61 279-341 376-438 (481)
135 KOG3926 F-box proteins [Amino 41.8 33 0.00071 30.4 3.5 42 6-47 199-241 (332)
136 PF15408 PH_7: Pleckstrin homo 41.6 13 0.00029 26.4 0.9 23 27-49 77-99 (104)
137 KOG0266 WD40 repeat-containing 41.3 3.4E+02 0.0075 26.3 18.8 191 105-334 211-412 (456)
138 PRK00178 tolB translocation pr 40.9 3.3E+02 0.0071 26.0 21.3 142 178-339 222-371 (430)
139 KOG1036 Mitotic spindle checkp 40.7 2.8E+02 0.0062 25.2 17.2 147 155-335 18-167 (323)
140 PF14339 DUF4394: Domain of un 39.4 97 0.0021 27.1 6.0 56 106-170 36-93 (236)
141 PF07569 Hira: TUP1-like enhan 39.0 1.9E+02 0.004 25.0 7.8 76 256-341 15-105 (219)
142 KOG0294 WD40 repeat-containing 38.9 3.1E+02 0.0068 25.2 10.9 94 208-321 47-145 (362)
143 PF09372 PRANC: PRANC domain; 37.9 28 0.00061 25.6 2.3 25 7-31 70-94 (97)
144 PF02239 Cytochrom_D1: Cytochr 37.8 3.5E+02 0.0077 25.4 11.7 104 215-337 6-114 (369)
145 PLN02919 haloacid dehalogenase 35.2 6.5E+02 0.014 27.7 23.0 67 260-335 812-892 (1057)
146 PF07250 Glyoxal_oxid_N: Glyox 35.1 1.8E+02 0.0038 25.7 7.1 87 231-323 47-137 (243)
147 PRK02889 tolB translocation pr 34.7 4.2E+02 0.0091 25.4 21.3 188 121-341 220-413 (427)
148 KOG1963 WD40 repeat protein [G 34.2 5.7E+02 0.012 26.8 19.4 93 231-332 433-539 (792)
149 KOG0321 WD40 repeat-containing 34.0 2.2E+02 0.0048 28.7 8.0 64 214-291 65-132 (720)
150 KOG0649 WD40 repeat protein [G 34.0 1.5E+02 0.0032 26.1 6.1 77 262-338 62-151 (325)
151 KOG0294 WD40 repeat-containing 33.7 3.8E+02 0.0083 24.6 13.4 107 156-291 174-283 (362)
152 cd00837 EVH1 EVH1 (Enabled, Va 33.2 1.9E+02 0.004 21.6 6.1 41 121-172 9-49 (104)
153 cd00200 WD40 WD40 domain, foun 32.7 3E+02 0.0066 23.2 21.4 93 230-336 157-254 (289)
154 PF12217 End_beta_propel: Cata 31.3 3.1E+02 0.0068 24.4 7.7 64 208-271 195-258 (367)
155 PRK02889 tolB translocation pr 30.0 5E+02 0.011 24.9 22.7 198 109-339 164-368 (427)
156 TIGR02800 propeller_TolB tol-p 29.7 4.8E+02 0.01 24.5 19.8 187 120-339 169-362 (417)
157 KOG0292 Vesicle coat complex C 29.6 3E+02 0.0065 29.2 8.4 57 279-336 226-285 (1202)
158 PF00568 WH1: WH1 domain; Int 29.4 1.2E+02 0.0026 22.8 4.6 39 121-171 16-55 (111)
159 PF12768 Rax2: Cortical protei 29.3 4.3E+02 0.0093 23.9 13.0 111 120-247 15-130 (281)
160 COG1520 FOG: WD40-like repeat 28.7 4.9E+02 0.011 24.3 14.9 134 180-338 79-224 (370)
161 PRK03629 tolB translocation pr 28.1 5.4E+02 0.012 24.7 21.8 187 120-340 222-415 (429)
162 KOG0295 WD40 repeat-containing 27.1 3.9E+02 0.0085 25.0 7.9 56 280-338 313-371 (406)
163 KOG4378 Nuclear protein COP1 [ 26.8 4.1E+02 0.0089 26.1 8.3 27 308-334 255-283 (673)
164 TIGR03032 conserved hypothetic 26.8 2.4E+02 0.0052 26.0 6.5 54 207-271 206-260 (335)
165 PTZ00420 coronin; Provisional 26.6 4.7E+02 0.01 26.4 9.3 66 262-337 136-203 (568)
166 KOG0647 mRNA export protein (c 26.4 5.1E+02 0.011 23.7 16.8 105 213-336 83-189 (347)
167 KOG0639 Transducin-like enhanc 26.3 6.4E+02 0.014 24.9 10.3 69 208-291 471-541 (705)
168 PF12768 Rax2: Cortical protei 25.8 5E+02 0.011 23.5 9.7 63 178-247 15-81 (281)
169 KOG2048 WD40 repeat protein [G 25.6 7.3E+02 0.016 25.3 15.0 165 120-321 224-400 (691)
170 KOG0266 WD40 repeat-containing 25.5 6.3E+02 0.014 24.5 12.6 114 209-338 166-283 (456)
171 KOG0303 Actin-binding protein 23.9 5E+02 0.011 24.7 8.0 58 279-339 152-211 (472)
172 PF06881 Elongin_A: RNA polyme 23.6 80 0.0017 23.8 2.6 29 8-36 3-31 (109)
173 PLN02772 guanylate kinase 23.5 3.4E+02 0.0073 25.9 7.2 45 178-223 50-96 (398)
174 cd00200 WD40 WD40 domain, foun 23.3 4.5E+02 0.0097 22.0 21.4 93 230-336 115-212 (289)
175 PF02239 Cytochrom_D1: Cytochr 23.2 6.3E+02 0.014 23.8 17.9 183 120-338 15-209 (369)
176 KOG0278 Serine/threonine kinas 22.6 5.5E+02 0.012 22.9 7.8 50 280-332 164-214 (334)
177 KOG0292 Vesicle coat complex C 22.3 4.4E+02 0.0094 28.1 8.0 77 279-355 270-375 (1202)
178 KOG2096 WD40 repeat protein [G 22.0 6.4E+02 0.014 23.3 9.4 97 212-323 196-299 (420)
179 KOG0289 mRNA splicing factor [ 21.3 7.5E+02 0.016 23.9 11.2 53 279-334 367-422 (506)
180 KOG2321 WD40 repeat protein [G 21.1 2.5E+02 0.0054 28.0 5.8 29 104-135 183-211 (703)
181 KOG0265 U5 snRNP-specific prot 20.9 4.8E+02 0.01 23.8 7.1 53 280-335 68-124 (338)
182 PF13859 BNR_3: BNR repeat-lik 20.3 6.8E+02 0.015 23.0 8.7 80 208-297 125-212 (310)
183 KOG1852 Cell cycle-associated 20.2 61 0.0013 26.0 1.4 30 22-51 144-175 (223)
No 1
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=100.00 E-value=7.8e-33 Score=243.37 Aligned_cols=214 Identities=24% Similarity=0.484 Sum_probs=163.0
Q ss_pred eeccCceEEEeeCCCCceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecC-CCCCEEE
Q 045675 104 VGSCNGLLCLDVSSAFGMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQA-RYDAIAE 182 (382)
Q Consensus 104 ~~s~~Gll~~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~-~~~~~~~ 182 (382)
++|||||||+... ..++||||+||+++.||+++..... ... ..++||||+.+++||||++..... .....++
T Consensus 1 ~~sCnGLlc~~~~----~~~~V~NP~T~~~~~LP~~~~~~~~--~~~-~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~ 73 (230)
T TIGR01640 1 VVPCDGLICFSYG----KRLVVWNPSTGQSRWLPTPKSRRSN--KES-DTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQ 73 (230)
T ss_pred CcccceEEEEecC----CcEEEECCCCCCEEecCCCCCcccc--ccc-ceEEEeecccCCcEEEEEEEeecCCCCCccEE
Confidence 4799999998765 3799999999999999977642111 111 257999999999999999987421 2346899
Q ss_pred EEECCCCCeeeecCCCCeeEEeCCcceEEECceEEEEeecccccccccEEEEEECCCceee-EeCCCCCCCC--CeeeEE
Q 045675 183 VYSTSTGKWKEVAAGTGSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFW-RTAMPELPTD--CYVKAL 259 (382)
Q Consensus 183 vyss~t~~W~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~-~i~~P~~~~~--~~~~l~ 259 (382)
||++++++||.++..+..... . +.+|++||.+||+....... ....|++||+.+|+|+ .+++|..... ....|+
T Consensus 74 Vys~~~~~Wr~~~~~~~~~~~-~-~~~v~~~G~lyw~~~~~~~~-~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~~L~ 150 (230)
T TIGR01640 74 VYTLGSNSWRTIECSPPHHPL-K-SRGVCINGVLYYLAYTLKTN-PDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLSLI 150 (230)
T ss_pred EEEeCCCCccccccCCCCccc-c-CCeEEECCEEEEEEEECCCC-CcEEEEEEEcccceEeeeeecCccccccccceEEE
Confidence 999999999998854332222 2 35999999999999764221 1138999999999999 5898876432 356799
Q ss_pred EeCCeEEEEEecCCCccCCCCCeEEEEEECCCCC--eeEEEEeecCCc------ccceEEeeCCcEEEEEcC---e-EEE
Q 045675 260 SYDQSLALAVYPGLGFRSRLSNRFELWVMNEGKG--WTRTFNTAFERI------AWPVGSFRDSKIIMKSVD---Q-FFL 327 (382)
Q Consensus 260 ~~~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~--W~~~~~i~~~~~------~~~~~~~~~g~l~l~~~~---~-~~~ 327 (382)
+++|+||++... . ....++||+|++++. |+++++|++... ..|+++.++|+|++...+ . ++.
T Consensus 151 ~~~G~L~~v~~~--~----~~~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~~~~~~~~ 224 (230)
T TIGR01640 151 NYKGKLAVLKQK--K----DTNNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDENPFYIFY 224 (230)
T ss_pred EECCEEEEEEec--C----CCCcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCCCceEEEE
Confidence 999999999986 3 235699999998743 999999975322 347888889998888774 3 999
Q ss_pred EeCCCC
Q 045675 328 FNPKTK 333 (382)
Q Consensus 328 yd~~t~ 333 (382)
||++++
T Consensus 225 y~~~~~ 230 (230)
T TIGR01640 225 YNVGEN 230 (230)
T ss_pred EeccCC
Confidence 999875
No 2
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.66 E-value=8.9e-15 Score=121.26 Aligned_cols=140 Identities=20% Similarity=0.331 Sum_probs=100.4
Q ss_pred eEEECceEEEEeecccccccccEEEEEECCCcee-eEeCCCCCCC--CCeeeEEE-eCCeEEEEEecCCCccCCCCCeEE
Q 045675 209 AVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELF-WRTAMPELPT--DCYVKALS-YDQSLALAVYPGLGFRSRLSNRFE 284 (382)
Q Consensus 209 ~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~-~~i~~P~~~~--~~~~~l~~-~~g~L~~~~~~~~~~~~~~~~~~~ 284 (382)
+|++||.+||++...... ....|++||+++|+| +.+++|.... .....|++ .+++||++... . ....++
T Consensus 1 gV~vnG~~hW~~~~~~~~-~~~~IlsFDl~~E~F~~~~~lP~~~~~~~~~~~L~~v~~~~L~~~~~~--~----~~~~~~ 73 (164)
T PF07734_consen 1 GVFVNGALHWLAYDENND-EKDFILSFDLSTEKFGRSLPLPFCNDDDDDSVSLSVVRGDCLCVLYQC--D----ETSKIE 73 (164)
T ss_pred CEEECCEEEeeEEecCCC-CceEEEEEeccccccCCEECCCCccCccCCEEEEEEecCCEEEEEEec--c----CCccEE
Confidence 589999999999977432 112799999999999 8889998765 25677754 47899999765 2 356799
Q ss_pred EEEECCCC---C-eeEEEEeecCCc---c-----cceEEeeCCcEEEEEcC--------eEEEEeCCCCcEEEEeeeCCC
Q 045675 285 LWVMNEGK---G-WTRTFNTAFERI---A-----WPVGSFRDSKIIMKSVD--------QFFLFNPKTKRNFILPIDSGM 344 (382)
Q Consensus 285 iW~l~~~~---~-W~~~~~i~~~~~---~-----~~~~~~~~g~l~l~~~~--------~~~~yd~~t~~~~~v~~~~~~ 344 (382)
||+|++++ . |+|.++|++... . ..+.+..++++++..+. .+++|+ +++..+++.+....
T Consensus 74 IWvm~~~~~~~~SWtK~~~i~~~~~~~~~~~~~~~~~~i~~~~~vlv~~~~~~~~~~~~~i~i~g-~~~~~~~~~~~~~~ 152 (164)
T PF07734_consen 74 IWVMKKYGYGKESWTKLFTIDLPPLPSLFFHFRNPSFFIDEEKKVLVCCDKETQREEKNKIYIVG-EDGKFIEVDIEDKS 152 (164)
T ss_pred EEEEeeeccCcceEEEEEEEecCCCCCcccccccceEEEeCCCeEEEEEcCCCCccceeEEEEEc-CCCEEEEcccccCC
Confidence 99999642 2 999999976543 1 22333344556666543 377888 77788888775433
Q ss_pred CCeEEEEEEeec
Q 045675 345 GYSYKVFTYVDS 356 (382)
Q Consensus 345 ~~~~~~~~y~~S 356 (382)
..++.++.|+||
T Consensus 153 ~~~~~~~~YvpS 164 (164)
T PF07734_consen 153 SCWPSICNYVPS 164 (164)
T ss_pred CCCCCEEEECCC
Confidence 336778899987
No 3
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=99.64 E-value=2.5e-13 Score=123.91 Aligned_cols=297 Identities=11% Similarity=0.031 Sum_probs=156.4
Q ss_pred CCCCCCCHHHHHHHHhcCC-hhhhhhhhccchhhHhhcCCHHHHHHHHccCCCceeeEEEeeccCCCCce-eeeeecCCC
Q 045675 7 TTVSSVPLVIITDILLQLP-IKSIVRFKCVSKSWLLLIKSSEFVTAHLNCSIRNHSLIVRYYNHAFGNDS-GLMLLRSDL 84 (382)
Q Consensus 7 ~~~~~LP~dll~~IL~rLp-~~sl~r~r~VcK~W~~li~sp~F~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 84 (382)
..|+.||+||+..|..||| ..++.|||+|||+||+.+....= +.++... ..+++.... ...+... .......+.
T Consensus 2 ~~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~~~-~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~ 77 (373)
T PLN03215 2 ADWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGVGK-KNPFRTR--PLILFNPIN-PSETLTDDRSYISRPGA 77 (373)
T ss_pred CChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcccccc-cCCcccc--cccccCccc-CCCCccccccccccccc
Confidence 4689999999999999998 57999999999999998774110 0000000 011111100 0000000 000000000
Q ss_pred ---cceeecCCCCCCCCCCCeeeeccCceEEEeeCCCCceeEEEEcccccceeccCCCCCccccccceeE----EEEEE-
Q 045675 85 ---KQHQVELPPLEGLSTFPKIVGSCNGLLCLDVSSAFGMAFVLWNPATNEFKGLPTPSLTESRLKTFWM----VSLGF- 156 (382)
Q Consensus 85 ---~~~~~~~p~~~~~~~~~~~~~s~~Gll~~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~----~~~~~- 156 (382)
...-+..+. ..++..|+|.-.+......++.+.||+++....+|+.....- +..+ ..+.+
T Consensus 78 ~ls~~~~~r~~~---------~~~~~~~WLik~~~~~~~~~~~Ll~PLsr~~~~~~~~~lnll---~f~v~ei~~~y~l~ 145 (373)
T PLN03215 78 FLSRAAFFRVTL---------SSSPSKGWLIKSDMDVNSGRFHLLNPLSRLPLRHSSESVDLL---EFTVSEIREAYQVL 145 (373)
T ss_pred eeeeeEEEEeec---------CCCCCCCcEEEEeccccCCccEecCccccCccCCCCccceee---eeEEEEccceEEEE
Confidence 000001110 013568999765543125688999999999777774322110 1100 01111
Q ss_pred EeeCC------------------C-CCeEEEEEEeecCCCCCEEEEEECCCCCeeeecCCCCeeEEeCCcceEEECceEE
Q 045675 157 GFNQD------------------T-NDYVLVRIVNFQARYDAIAEVYSTSTGKWKEVAAGTGSCVIYGGQDAVAVKGVLH 217 (382)
Q Consensus 157 g~d~~------------------~-~~ykvv~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~v~~~G~ly 217 (382)
+.+.. . .+|-|+++... .++.... .+.|..++.. .. .. ...++.+|++|
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~i~~~-----g~l~~w~--~~~Wt~l~~~-~~-~~---~DIi~~kGkfY 213 (373)
T PLN03215 146 DWAKRRETRPGYQRSALVKVKEGDNHRDGVLGIGRD-----GKINYWD--GNVLKALKQM-GY-HF---SDIIVHKGQTY 213 (373)
T ss_pred ecccccccccceeEEEEEEeecCCCcceEEEEEeec-----CcEeeec--CCeeeEccCC-Cc-ee---eEEEEECCEEE
Confidence 11100 0 11223333221 0111122 4788888643 22 22 48899999999
Q ss_pred EEeecccccccccEEEEEECCCceeeEeCCC-----C-CCCCCeeeEEEeCCeEEEEEecCCCcc---------CCCCCe
Q 045675 218 WIANGIGVLVNEKFVVSYDMNLELFWRTAMP-----E-LPTDCYVKALSYDQSLALAVYPGLGFR---------SRLSNR 282 (382)
Q Consensus 218 wl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P-----~-~~~~~~~~l~~~~g~L~~~~~~~~~~~---------~~~~~~ 282 (382)
.+...+ .+.++|..- +.+.+..+ . ........|++..|.|++|........ ...+..
T Consensus 214 AvD~~G-------~l~~i~~~l-~i~~v~~~i~~~~~~g~~~~~~yLVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~ 285 (373)
T PLN03215 214 ALDSIG-------IVYWINSDL-EFSRFGTSLDENITDGCWTGDRRFVECCGELYIVERLPKESTWKRKADGFEYSRTVG 285 (373)
T ss_pred EEcCCC-------eEEEEecCC-ceeeecceecccccCCcccCceeEEEECCEEEEEEEEccCcccccccccccccceeE
Confidence 996554 666777432 12222211 1 111235779999999999998511100 012357
Q ss_pred EEEEEECCCCC-eeEEEEeecCCc----ccceEEe-------eCCcEEEEEcCeEEEEeCCCCcEEEEe
Q 045675 283 FELWVMNEGKG-WTRTFNTAFERI----AWPVGSF-------RDSKIIMKSVDQFFLFNPKTKRNFILP 339 (382)
Q Consensus 283 ~~iW~l~~~~~-W~~~~~i~~~~~----~~~~~~~-------~~g~l~l~~~~~~~~yd~~t~~~~~v~ 339 (382)
++||+++...+ |+++..+.-..+ -..+++. ..+.||+..+....+||++.++..-+.
T Consensus 286 f~VfklD~~~~~WveV~sLgd~aLFlG~~~s~sv~a~e~pG~k~NcIYFtdd~~~~v~~~~dg~~~~~~ 354 (373)
T PLN03215 286 FKVYKFDDELAKWMEVKTLGDNAFVMATDTCFSVLAHEFYGCLPNSIYFTEDTMPKVFKLDNGNGSSIE 354 (373)
T ss_pred EEEEEEcCCCCcEEEecccCCeEEEEECCccEEEecCCCCCccCCEEEEECCCcceEEECCCCCccceE
Confidence 99999987644 999987753332 1111111 223488888778889999999866553
No 4
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.61 E-value=8.9e-14 Score=136.58 Aligned_cols=218 Identities=16% Similarity=0.062 Sum_probs=158.7
Q ss_pred eeeeccCceEEEeeCCC----CceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCC
Q 045675 102 KIVGSCNGLLCLDVSSA----FGMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARY 177 (382)
Q Consensus 102 ~~~~s~~Gll~~~~~~~----~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~ 177 (382)
.-++..+|.|.+..+.+ ....+..+||-+++|..+|+++..+ .++|.....+.-.+|+... +...
T Consensus 326 ~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R----------~~~~v~~l~g~iYavGG~d-g~~~ 394 (571)
T KOG4441|consen 326 VGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKR----------SDFGVAVLDGKLYAVGGFD-GEKS 394 (571)
T ss_pred ccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCcc----------ccceeEEECCEEEEEeccc-cccc
Confidence 34566688888776653 2567999999999999999998743 2344444444555555544 3445
Q ss_pred CCEEEEEECCCCCeeeecCCCCeeEEeCCcceEEECceEEEEeecccccccccEEEEEECCCceeeEe-CCCCCCCCCee
Q 045675 178 DAIAEVYSTSTGKWKEVAAGTGSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRT-AMPELPTDCYV 256 (382)
Q Consensus 178 ~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P~~~~~~~~ 256 (382)
...+|.|++.++.|..++.+...+.. ..++.++|.+|-+++..........+.+||+.+++|+.+ +++..+ ...
T Consensus 395 l~svE~YDp~~~~W~~va~m~~~r~~---~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R--~~~ 469 (571)
T KOG4441|consen 395 LNSVECYDPVTNKWTPVAPMLTRRSG---HGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRR--SGF 469 (571)
T ss_pred cccEEEecCCCCcccccCCCCcceee---eEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCccccc--ccc
Confidence 56999999999999999999655544 588999999999999765544567999999999999998 677666 566
Q ss_pred eEEEeCCeEEEEEecCCCccCCCCCeEEEEEECCCCCeeEEEEeecCCcccceEEeeCCcEEEEEcC-------eEEEEe
Q 045675 257 KALSYDQSLALAVYPGLGFRSRLSNRFELWVMNEGKGWTRTFNTAFERIAWPVGSFRDSKIIMKSVD-------QFFLFN 329 (382)
Q Consensus 257 ~l~~~~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~W~~~~~i~~~~~~~~~~~~~~g~l~l~~~~-------~~~~yd 329 (382)
.+++++|+|+++++. .+ ......++.+-...+ .|..+..|....-..-+.+ .++.+|++.+. .+-.||
T Consensus 470 g~a~~~~~iYvvGG~--~~-~~~~~~VE~ydp~~~-~W~~v~~m~~~rs~~g~~~-~~~~ly~vGG~~~~~~l~~ve~yd 544 (571)
T KOG4441|consen 470 GVAVLNGKIYVVGGF--DG-TSALSSVERYDPETN-QWTMVAPMTSPRSAVGVVV-LGGKLYAVGGFDGNNNLNTVECYD 544 (571)
T ss_pred eEEEECCEEEEECCc--cC-CCccceEEEEcCCCC-ceeEcccCccccccccEEE-ECCEEEEEecccCccccceeEEcC
Confidence 789999999999997 32 223445565555544 5999976644332222233 35667776653 799999
Q ss_pred CCCCcEEEEee
Q 045675 330 PKTKRNFILPI 340 (382)
Q Consensus 330 ~~t~~~~~v~~ 340 (382)
+++++|+...-
T Consensus 545 p~~d~W~~~~~ 555 (571)
T KOG4441|consen 545 PETDTWTEVTE 555 (571)
T ss_pred CCCCceeeCCC
Confidence 99999999854
No 5
>PHA02713 hypothetical protein; Provisional
Probab=99.58 E-value=1.7e-13 Score=135.10 Aligned_cols=222 Identities=12% Similarity=0.006 Sum_probs=148.4
Q ss_pred eeccCceEEEeeCCC----CceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCC
Q 045675 104 VGSCNGLLCLDVSSA----FGMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDA 179 (382)
Q Consensus 104 ~~s~~Gll~~~~~~~----~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~ 179 (382)
.+..+|.|.+..+.. ....++.+||.+++|..+|+++.... .++.....+...|++... ......
T Consensus 299 ~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~----------~~~~~~~~g~IYviGG~~-~~~~~~ 367 (557)
T PHA02713 299 SAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRC----------RFSLAVIDDTIYAIGGQN-GTNVER 367 (557)
T ss_pred EEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhh----------ceeEEEECCEEEEECCcC-CCCCCc
Confidence 455678877666531 13568899999999999999886432 111111223344444432 122235
Q ss_pred EEEEEECCCCCeeeecCCCCeeEEeCCcceEEECceEEEEeeccccc-----------------ccccEEEEEECCCcee
Q 045675 180 IAEVYSTSTGKWKEVAAGTGSCVIYGGQDAVAVKGVLHWIANGIGVL-----------------VNEKFVVSYDMNLELF 242 (382)
Q Consensus 180 ~~~vyss~t~~W~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~-----------------~~~~~i~~fD~~~~~~ 242 (382)
.+++|++.+++|..++.++.+... ..++.++|++|.+++..... .....+.+||+.+++|
T Consensus 368 sve~Ydp~~~~W~~~~~mp~~r~~---~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W 444 (557)
T PHA02713 368 TIECYTMGDDKWKMLPDMPIALSS---YGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIW 444 (557)
T ss_pred eEEEEECCCCeEEECCCCCccccc---ccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeE
Confidence 799999999999999988655443 57889999999998754210 0135799999999999
Q ss_pred eEe-CCCCCCCCCeeeEEEeCCeEEEEEecCCCccCCCCCeEEEEEECCCCCeeEEEEeecCCcccceEEeeCCcEEEEE
Q 045675 243 WRT-AMPELPTDCYVKALSYDQSLALAVYPGLGFRSRLSNRFELWVMNEGKGWTRTFNTAFERIAWPVGSFRDSKIIMKS 321 (382)
Q Consensus 243 ~~i-~~P~~~~~~~~~l~~~~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~W~~~~~i~~~~~~~~~~~~~~g~l~l~~ 321 (382)
+.+ ++|..+ ....+++++|+|+++++. .........++.+-.+.++.|+.+..|+.......+++. +|.||+..
T Consensus 445 ~~v~~m~~~r--~~~~~~~~~~~IYv~GG~--~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~-~~~iyv~G 519 (557)
T PHA02713 445 ETLPNFWTGT--IRPGVVSHKDDIYVVCDI--KDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH-DNTIMMLH 519 (557)
T ss_pred eecCCCCccc--ccCcEEEECCEEEEEeCC--CCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE-CCEEEEEe
Confidence 988 555554 456788999999999886 210001123455554441259999888765444444444 67788776
Q ss_pred cC----eEEEEeCCCCcEEEEeeeCCC
Q 045675 322 VD----QFFLFNPKTKRNFILPIDSGM 344 (382)
Q Consensus 322 ~~----~~~~yd~~t~~~~~v~~~~~~ 344 (382)
+. .+-+||++|++|..+.-....
T Consensus 520 g~~~~~~~e~yd~~~~~W~~~~~~~~~ 546 (557)
T PHA02713 520 CYESYMLQDTFNVYTYEWNHICHQHSN 546 (557)
T ss_pred eecceeehhhcCcccccccchhhhcCC
Confidence 53 588999999999999755433
No 6
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.53 E-value=1.1e-12 Score=129.02 Aligned_cols=237 Identities=17% Similarity=0.100 Sum_probs=161.0
Q ss_pred ccCceEEEeeCCCC----ceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEE
Q 045675 106 SCNGLLCLDVSSAF----GMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIA 181 (382)
Q Consensus 106 s~~Gll~~~~~~~~----~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~ 181 (382)
++.+.|.+..+... ...+..+||.+++|..+.+++..... ++.+.- .+...|++....+......+
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~--------~~~~~~--~~~lYv~GG~~~~~~~l~~v 351 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCR--------VGVAVL--NGKLYVVGGYDSGSDRLSSV 351 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCccccc--------ccEEEE--CCEEEEEccccCCCcccceE
Confidence 55566655554321 45678899999999999999865421 122222 22233333322112344699
Q ss_pred EEEECCCCCeeeecCCCCeeEEeCCcceEEECceEEEEeecccccccccEEEEEECCCceeeEe-CCCCCCCCCeeeEEE
Q 045675 182 EVYSTSTGKWKEVAAGTGSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRT-AMPELPTDCYVKALS 260 (382)
Q Consensus 182 ~vyss~t~~W~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P~~~~~~~~~l~~ 260 (382)
+.|++.+++|..++.+...+.. ...+.++|.+|.+++.++. .....+..||+.+++|..+ +++..+ .....++
T Consensus 352 e~YD~~~~~W~~~a~M~~~R~~---~~v~~l~g~iYavGG~dg~-~~l~svE~YDp~~~~W~~va~m~~~r--~~~gv~~ 425 (571)
T KOG4441|consen 352 ERYDPRTNQWTPVAPMNTKRSD---FGVAVLDGKLYAVGGFDGE-KSLNSVECYDPVTNKWTPVAPMLTRR--SGHGVAV 425 (571)
T ss_pred EEecCCCCceeccCCccCcccc---ceeEEECCEEEEEeccccc-cccccEEEecCCCCcccccCCCCcce--eeeEEEE
Confidence 9999999999999999665544 5889999999999997743 3566899999999999998 566644 6788899
Q ss_pred eCCeEEEEEecCCCccCCCCCeEEEEEECCCCCeeEEEEeecCCcccceEEeeCCcEEEEEcC-------eEEEEeCCCC
Q 045675 261 YDQSLALAVYPGLGFRSRLSNRFELWVMNEGKGWTRTFNTAFERIAWPVGSFRDSKIIMKSVD-------QFFLFNPKTK 333 (382)
Q Consensus 261 ~~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~W~~~~~i~~~~~~~~~~~~~~g~l~l~~~~-------~~~~yd~~t~ 333 (382)
++|+||++++. .........++.+-...+ .|+.+..|........+++. ++.||.+.+. .+-.||++++
T Consensus 426 ~~g~iYi~GG~--~~~~~~l~sve~YDP~t~-~W~~~~~M~~~R~~~g~a~~-~~~iYvvGG~~~~~~~~~VE~ydp~~~ 501 (571)
T KOG4441|consen 426 LGGKLYIIGGG--DGSSNCLNSVECYDPETN-TWTLIAPMNTRRSGFGVAVL-NGKIYVVGGFDGTSALSSVERYDPETN 501 (571)
T ss_pred ECCEEEEEcCc--CCCccccceEEEEcCCCC-ceeecCCcccccccceEEEE-CCEEEEECCccCCCccceEEEEcCCCC
Confidence 99999999997 321113456666665554 59999988766555555655 6678877763 5899999999
Q ss_pred cEEEEeeeCCCCCeEEEEEEeeceeecCC
Q 045675 334 RNFILPIDSGMGYSYKVFTYVDSIVAVNG 362 (382)
Q Consensus 334 ~~~~v~~~~~~~~~~~~~~y~~SLv~~~~ 362 (382)
+|..+...........+......|--+++
T Consensus 502 ~W~~v~~m~~~rs~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 502 QWTMVAPMTSPRSAVGVVVLGGKLYAVGG 530 (571)
T ss_pred ceeEcccCccccccccEEEECCEEEEEec
Confidence 99999633211112334444444444443
No 7
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.51 E-value=3.2e-13 Score=107.26 Aligned_cols=106 Identities=23% Similarity=0.454 Sum_probs=81.3
Q ss_pred eEEECceEEEEeecccccccccEEEEEECCCceeeEeCCC--CCCCCCeeeEEEeCCeEEEEEecCCCccCCCCCeEEEE
Q 045675 209 AVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRTAMP--ELPTDCYVKALSYDQSLALAVYPGLGFRSRLSNRFELW 286 (382)
Q Consensus 209 ~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P--~~~~~~~~~l~~~~g~L~~~~~~~~~~~~~~~~~~~iW 286 (382)
++++||.+||++.... .....|++||+.+|+|+.+++| .........|.+++|+|+++... ... ....++||
T Consensus 1 gicinGvly~~a~~~~--~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~--~~~--~~~~~~iW 74 (129)
T PF08268_consen 1 GICINGVLYWLAWSED--SDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYN--DQG--EPDSIDIW 74 (129)
T ss_pred CEEECcEEEeEEEECC--CCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEec--CCC--CcceEEEE
Confidence 5889999999998721 1357999999999999999998 22223678899999999999987 310 13579999
Q ss_pred EECCCCC--eeEEEEe-ecC-------CcccceEEeeCCcEEEE
Q 045675 287 VMNEGKG--WTRTFNT-AFE-------RIAWPVGSFRDSKIIMK 320 (382)
Q Consensus 287 ~l~~~~~--W~~~~~i-~~~-------~~~~~~~~~~~g~l~l~ 320 (382)
+|+|++. |++.+.+ +.. ....+.++.++|+|++.
T Consensus 75 vLeD~~k~~Wsk~~~~lp~~~~~~~~~~~~~~~g~~~~Geiv~~ 118 (129)
T PF08268_consen 75 VLEDYEKQEWSKKHIVLPPSWQHFVHDCDFSFVGVTDTGEIVFA 118 (129)
T ss_pred EeeccccceEEEEEEECChHHhcccCCcEEEEEEEcCCCEEEEE
Confidence 9998854 9988764 332 12567788888998887
No 8
>PHA02713 hypothetical protein; Provisional
Probab=99.50 E-value=2.9e-12 Score=126.35 Aligned_cols=221 Identities=13% Similarity=0.023 Sum_probs=140.7
Q ss_pred eEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEECCCCCeeeecCCCCee
Q 045675 122 AFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYSTSTGKWKEVAAGTGSC 201 (382)
Q Consensus 122 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~~~ 201 (382)
.+..+||.+++|..++++|..... .+.+ ...+.-.|++...........++.|++.++.|..++.++..+
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~--------~~~a--~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R 342 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIIN--------YASA--IVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNR 342 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccc--------eEEE--EECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchh
Confidence 567899999999999988864311 1111 112333333322111112357999999999999998886544
Q ss_pred EEeCCcceEEECceEEEEeecccccccccEEEEEECCCceeeEe-CCCCCCCCCeeeEEEeCCeEEEEEecCCCccC---
Q 045675 202 VIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRT-AMPELPTDCYVKALSYDQSLALAVYPGLGFRS--- 277 (382)
Q Consensus 202 ~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P~~~~~~~~~l~~~~g~L~~~~~~~~~~~~--- 277 (382)
.. ..++.++|++|.+++..... ....+.+||+.+++|+.+ ++|..+ .....++++|+|+++++. ....
T Consensus 343 ~~---~~~~~~~g~IYviGG~~~~~-~~~sve~Ydp~~~~W~~~~~mp~~r--~~~~~~~~~g~IYviGG~--~~~~~~~ 414 (557)
T PHA02713 343 CR---FSLAVIDDTIYAIGGQNGTN-VERTIECYTMGDDKWKMLPDMPIAL--SSYGMCVLDQYIYIIGGR--TEHIDYT 414 (557)
T ss_pred hc---eeEEEECCEEEEECCcCCCC-CCceEEEEECCCCeEEECCCCCccc--ccccEEEECCEEEEEeCC--Ccccccc
Confidence 33 47889999999999865321 245799999999999998 666655 455677899999999986 2100
Q ss_pred --------------CCCCeEEEEEECCCCCeeEEEEeecCCcccceEEeeCCcEEEEEcC--------eEEEEeCCC-Cc
Q 045675 278 --------------RLSNRFELWVMNEGKGWTRTFNTAFERIAWPVGSFRDSKIIMKSVD--------QFFLFNPKT-KR 334 (382)
Q Consensus 278 --------------~~~~~~~iW~l~~~~~W~~~~~i~~~~~~~~~~~~~~g~l~l~~~~--------~~~~yd~~t-~~ 334 (382)
.....++.+-...+ .|+.+..|+.......+++. +|.||+..+. .+.+||+++ ++
T Consensus 415 ~~~~~~~~~~~~~~~~~~~ve~YDP~td-~W~~v~~m~~~r~~~~~~~~-~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~ 492 (557)
T PHA02713 415 SVHHMNSIDMEEDTHSSNKVIRYDTVNN-IWETLPNFWTGTIRPGVVSH-KDDIYVVCDIKDEKNVKTCIFRYNTNTYNG 492 (557)
T ss_pred cccccccccccccccccceEEEECCCCC-eEeecCCCCcccccCcEEEE-CCEEEEEeCCCCCCccceeEEEecCCCCCC
Confidence 00123333333332 49988877654433334443 6778877642 467999999 89
Q ss_pred EEEEeeeCCCCCeEEEEEEeeceeecCC
Q 045675 335 NFILPIDSGMGYSYKVFTYVDSIVAVNG 362 (382)
Q Consensus 335 ~~~v~~~~~~~~~~~~~~y~~SLv~~~~ 362 (382)
|+.+...........+..+...|--+++
T Consensus 493 W~~~~~m~~~r~~~~~~~~~~~iyv~Gg 520 (557)
T PHA02713 493 WELITTTESRLSALHTILHDNTIMMLHC 520 (557)
T ss_pred eeEccccCcccccceeEEECCEEEEEee
Confidence 9998643322223444444444444544
No 9
>PHA03098 kelch-like protein; Provisional
Probab=99.44 E-value=2e-11 Score=120.90 Aligned_cols=215 Identities=14% Similarity=0.090 Sum_probs=137.9
Q ss_pred cCceEEEeeCCC----CceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEE
Q 045675 107 CNGLLCLDVSSA----FGMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAE 182 (382)
Q Consensus 107 ~~Gll~~~~~~~----~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~ 182 (382)
.++.|.+..+.. ....++.+||.|++|..+|+++..... ++... ..+...|++... .......++
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~--------~~~~~--~~~~lyv~GG~~-~~~~~~~v~ 361 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKN--------PGVTV--FNNRIYVIGGIY-NSISLNTVE 361 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCccccc--------ceEEE--ECCEEEEEeCCC-CCEecceEE
Confidence 356665554421 134688999999999999988753211 11111 123333443322 122345899
Q ss_pred EEECCCCCeeeecCCCCeeEEeCCcceEEECceEEEEeecccccccccEEEEEECCCceeeEe-CCCCCCCCCeeeEEEe
Q 045675 183 VYSTSTGKWKEVAAGTGSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRT-AMPELPTDCYVKALSY 261 (382)
Q Consensus 183 vyss~t~~W~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P~~~~~~~~~l~~~ 261 (382)
+|+..+++|+..+.++.++.. +.++.++|.+|.+++..........+..||+.+++|+.+ ++|... .....+..
T Consensus 362 ~yd~~~~~W~~~~~lp~~r~~---~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r--~~~~~~~~ 436 (534)
T PHA03098 362 SWKPGESKWREEPPLIFPRYN---PCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISH--YGGCAIYH 436 (534)
T ss_pred EEcCCCCceeeCCCcCcCCcc---ceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccc--cCceEEEE
Confidence 999999999998877554433 577889999999988532221245799999999999988 556544 34456778
Q ss_pred CCeEEEEEecCCCccCCCCCeEEEEEECCCCC-eeEEEEeecCCcccceEEeeCCcEEEEEcC-------eEEEEeCCCC
Q 045675 262 DQSLALAVYPGLGFRSRLSNRFELWVMNEGKG-WTRTFNTAFERIAWPVGSFRDSKIIMKSVD-------QFFLFNPKTK 333 (382)
Q Consensus 262 ~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~-W~~~~~i~~~~~~~~~~~~~~g~l~l~~~~-------~~~~yd~~t~ 333 (382)
+|+|+++++. .........-.+|..+...+ |+.+..++........++. ++.|++..+. .+..||++++
T Consensus 437 ~~~iyv~GG~--~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 437 DGKIYVIGGI--SYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF-NNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred CCEEEEECCc--cCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE-CCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 9999999886 21000001123666665434 9988766543332333333 6677776642 7899999999
Q ss_pred cEEEEee
Q 045675 334 RNFILPI 340 (382)
Q Consensus 334 ~~~~v~~ 340 (382)
+|+.+..
T Consensus 514 ~W~~~~~ 520 (534)
T PHA03098 514 TWTLFCK 520 (534)
T ss_pred EEEecCC
Confidence 9998864
No 10
>PHA02790 Kelch-like protein; Provisional
Probab=99.41 E-value=2.2e-11 Score=118.34 Aligned_cols=198 Identities=12% Similarity=0.033 Sum_probs=133.7
Q ss_pred cCceEEEeeCCC---CceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEE
Q 045675 107 CNGLLCLDVSSA---FGMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEV 183 (382)
Q Consensus 107 ~~Gll~~~~~~~---~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~v 183 (382)
.++.|.+..+.+ ....+..+||.+++|..+|+++..... .+.. ...+...+++... ....++.
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~--------~~~v--~~~~~iYviGG~~----~~~sve~ 335 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLY--------ASGV--PANNKLYVVGGLP----NPTSVER 335 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhc--------ceEE--EECCEEEEECCcC----CCCceEE
Confidence 566666555431 134677899999999999998764321 1111 1123344444322 1246899
Q ss_pred EECCCCCeeeecCCCCeeEEeCCcceEEECceEEEEeecccccccccEEEEEECCCceeeEe-CCCCCCCCCeeeEEEeC
Q 045675 184 YSTSTGKWKEVAAGTGSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRT-AMPELPTDCYVKALSYD 262 (382)
Q Consensus 184 yss~t~~W~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P~~~~~~~~~l~~~~ 262 (382)
|++.+++|..++.++.++.. ..++.++|.+|.+++.... ...+.+||+.+++|+.+ ++|..+ .....++.+
T Consensus 336 ydp~~n~W~~~~~l~~~r~~---~~~~~~~g~IYviGG~~~~---~~~ve~ydp~~~~W~~~~~m~~~r--~~~~~~~~~ 407 (480)
T PHA02790 336 WFHGDAAWVNMPSLLKPRCN---PAVASINNVIYVIGGHSET---DTTTEYLLPNHDQWQFGPSTYYPH--YKSCALVFG 407 (480)
T ss_pred EECCCCeEEECCCCCCCCcc---cEEEEECCEEEEecCcCCC---CccEEEEeCCCCEEEeCCCCCCcc--ccceEEEEC
Confidence 99999999999888654433 5788999999999886422 24688999999999998 444444 345667899
Q ss_pred CeEEEEEecCCCccCCCCCeEEEEEECCCCCeeEEEEeecCCcccceEEeeCCcEEEEEcC-------eEEEEeCCCCcE
Q 045675 263 QSLALAVYPGLGFRSRLSNRFELWVMNEGKGWTRTFNTAFERIAWPVGSFRDSKIIMKSVD-------QFFLFNPKTKRN 335 (382)
Q Consensus 263 g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~W~~~~~i~~~~~~~~~~~~~~g~l~l~~~~-------~~~~yd~~t~~~ 335 (382)
|+|+++++. .+++-.+.+ .|+.+..|+.......+++. +|.||+..+. .+.+||+++++|
T Consensus 408 ~~IYv~GG~-----------~e~ydp~~~-~W~~~~~m~~~r~~~~~~v~-~~~IYviGG~~~~~~~~~ve~Yd~~~~~W 474 (480)
T PHA02790 408 RRLFLVGRN-----------AEFYCESSN-TWTLIDDPIYPRDNPELIIV-DNKLLLIGGFYRGSYIDTIEVYNNRTYSW 474 (480)
T ss_pred CEEEEECCc-----------eEEecCCCC-cEeEcCCCCCCccccEEEEE-CCEEEEECCcCCCcccceEEEEECCCCeE
Confidence 999998763 244444332 49988877654433334443 6778887652 688999999999
Q ss_pred EEEe
Q 045675 336 FILP 339 (382)
Q Consensus 336 ~~v~ 339 (382)
+..+
T Consensus 475 ~~~~ 478 (480)
T PHA02790 475 NIWD 478 (480)
T ss_pred EecC
Confidence 8653
No 11
>PLN02153 epithiospecifier protein
Probab=99.28 E-value=1.1e-09 Score=102.03 Aligned_cols=223 Identities=10% Similarity=-0.002 Sum_probs=129.7
Q ss_pred eccCceEEEeeCCC-----CceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCC
Q 045675 105 GSCNGLLCLDVSSA-----FGMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDA 179 (382)
Q Consensus 105 ~s~~Gll~~~~~~~-----~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~ 179 (382)
...++.|.+..+.. ....++++||.+.+|..+|+....+.. ...++......+...|++... ......
T Consensus 29 ~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~------~~~~~~~~~~~~~iyv~GG~~-~~~~~~ 101 (341)
T PLN02153 29 AVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRI------SCLGVRMVAVGTKLYIFGGRD-EKREFS 101 (341)
T ss_pred EEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCC------ccCceEEEEECCEEEEECCCC-CCCccC
Confidence 44566776654421 024689999999999998865422110 011111111123344443322 122234
Q ss_pred EEEEEECCCCCeeeecCC-----CCeeEEeCCcceEEECceEEEEeeccccc-----ccccEEEEEECCCceeeEeCCCC
Q 045675 180 IAEVYSTSTGKWKEVAAG-----TGSCVIYGGQDAVAVKGVLHWIANGIGVL-----VNEKFVVSYDMNLELFWRTAMPE 249 (382)
Q Consensus 180 ~~~vyss~t~~W~~~~~~-----~~~~~~~~~~~~v~~~G~lywl~~~~~~~-----~~~~~i~~fD~~~~~~~~i~~P~ 249 (382)
.+++|++.+++|+.++.+ +..+.. +.++..+|++|.+++..... .....+.+||+.+++|..++.+.
T Consensus 102 ~v~~yd~~t~~W~~~~~~~~~~~p~~R~~---~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~ 178 (341)
T PLN02153 102 DFYSYDTVKNEWTFLTKLDEEGGPEARTF---HSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPG 178 (341)
T ss_pred cEEEEECCCCEEEEeccCCCCCCCCCcee---eEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCC
Confidence 799999999999988765 223333 57788999999998864211 01246899999999999885432
Q ss_pred C--CCCCeeeEEEeCCeEEEEEecCCC---ccCC--CCCeEEEEEECCCCCeeEEEEe---ecCCcccceEEeeCCcEEE
Q 045675 250 L--PTDCYVKALSYDQSLALAVYPGLG---FRSR--LSNRFELWVMNEGKGWTRTFNT---AFERIAWPVGSFRDSKIIM 319 (382)
Q Consensus 250 ~--~~~~~~~l~~~~g~L~~~~~~~~~---~~~~--~~~~~~iW~l~~~~~W~~~~~i---~~~~~~~~~~~~~~g~l~l 319 (382)
. .......++..+|+|+++...... .+.. ....++++.++.. .|+++... |.........+ -++.||+
T Consensus 179 ~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~-~W~~~~~~g~~P~~r~~~~~~~-~~~~iyv 256 (341)
T PLN02153 179 ENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASG-KWTEVETTGAKPSARSVFAHAV-VGKYIII 256 (341)
T ss_pred CCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCC-cEEeccccCCCCCCcceeeeEE-ECCEEEE
Confidence 1 111344567889999998764100 0000 1223444433333 49988643 22221222222 3456766
Q ss_pred EEcC----------------eEEEEeCCCCcEEEEe
Q 045675 320 KSVD----------------QFFLFNPKTKRNFILP 339 (382)
Q Consensus 320 ~~~~----------------~~~~yd~~t~~~~~v~ 339 (382)
.... .++.||+++++|+.+.
T Consensus 257 ~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~ 292 (341)
T PLN02153 257 FGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLG 292 (341)
T ss_pred ECcccCCccccccccccccccEEEEEcCccEEEecc
Confidence 5541 6899999999999985
No 12
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.25 E-value=2.5e-09 Score=99.98 Aligned_cols=242 Identities=10% Similarity=0.039 Sum_probs=142.1
Q ss_pred eccCceEEEeeCCCCceeEEEEcc--cccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecC-----CC
Q 045675 105 GSCNGLLCLDVSSAFGMAFVLWNP--ATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQA-----RY 177 (382)
Q Consensus 105 ~s~~Gll~~~~~~~~~~~~~V~NP--~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~-----~~ 177 (382)
+..++-|.+..+.. ...++++|+ .+++|..+|+++..... .+++.. ..+...|++...... ..
T Consensus 14 ~~~~~~vyv~GG~~-~~~~~~~d~~~~~~~W~~l~~~p~~~R~-------~~~~~~--~~~~iYv~GG~~~~~~~~~~~~ 83 (346)
T TIGR03547 14 AIIGDKVYVGLGSA-GTSWYKLDLKKPSKGWQKIADFPGGPRN-------QAVAAA--IDGKLYVFGGIGKANSEGSPQV 83 (346)
T ss_pred EEECCEEEEEcccc-CCeeEEEECCCCCCCceECCCCCCCCcc-------cceEEE--ECCEEEEEeCCCCCCCCCccee
Confidence 34567776655432 346777774 78889999988732111 111111 123444444432111 01
Q ss_pred CCEEEEEECCCCCeeeecCC-CCeeEEeCCcceE-EECceEEEEeeccccc-----------------------------
Q 045675 178 DAIAEVYSTSTGKWKEVAAG-TGSCVIYGGQDAV-AVKGVLHWIANGIGVL----------------------------- 226 (382)
Q Consensus 178 ~~~~~vyss~t~~W~~~~~~-~~~~~~~~~~~~v-~~~G~lywl~~~~~~~----------------------------- 226 (382)
...++.|++.+++|+.++.+ +.... + +.++ .++|++|.+++.....
T Consensus 84 ~~~v~~Yd~~~~~W~~~~~~~p~~~~--~-~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (346)
T TIGR03547 84 FDDVYRYDPKKNSWQKLDTRSPVGLL--G-ASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQP 160 (346)
T ss_pred cccEEEEECCCCEEecCCCCCCCccc--c-eeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCC
Confidence 24799999999999998743 22221 1 2344 6899999998864210
Q ss_pred ----ccccEEEEEECCCceeeEe-CCCCCCCCCeeeEEEeCCeEEEEEecCCCccCCCCCeEEEEE--ECCCC-CeeEEE
Q 045675 227 ----VNEKFVVSYDMNLELFWRT-AMPELPTDCYVKALSYDQSLALAVYPGLGFRSRLSNRFELWV--MNEGK-GWTRTF 298 (382)
Q Consensus 227 ----~~~~~i~~fD~~~~~~~~i-~~P~~~~~~~~~l~~~~g~L~~~~~~~~~~~~~~~~~~~iW~--l~~~~-~W~~~~ 298 (382)
.....+.+||+.+++|+.+ ++|.... ....++..+|+|++++.. ... .....++|. ++... .|..+.
T Consensus 161 ~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r-~~~~~~~~~~~iyv~GG~--~~~--~~~~~~~~~y~~~~~~~~W~~~~ 235 (346)
T TIGR03547 161 PEDYFWNKNVLSYDPSTNQWRNLGENPFLGT-AGSAIVHKGNKLLLINGE--IKP--GLRTAEVKQYLFTGGKLEWNKLP 235 (346)
T ss_pred hhHcCccceEEEEECCCCceeECccCCCCcC-CCceEEEECCEEEEEeee--eCC--CccchheEEEEecCCCceeeecC
Confidence 0025799999999999998 5664221 345677899999999986 210 122334544 44332 399988
Q ss_pred EeecCCc------ccceEEeeCCcEEEEEcC------------------------eEEEEeCCCCcEEEEeeeCCCCCeE
Q 045675 299 NTAFERI------AWPVGSFRDSKIIMKSVD------------------------QFFLFNPKTKRNFILPIDSGMGYSY 348 (382)
Q Consensus 299 ~i~~~~~------~~~~~~~~~g~l~l~~~~------------------------~~~~yd~~t~~~~~v~~~~~~~~~~ 348 (382)
.|+.... .....+.-++.||+.... .+-+||+++++|+.+..........
T Consensus 236 ~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~~~~~ 315 (346)
T TIGR03547 236 PLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLPQGLAYG 315 (346)
T ss_pred CCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCCCCceee
Confidence 7764321 111122346678776541 4679999999999986332222233
Q ss_pred EEEEEeeceeecCCCC
Q 045675 349 KVFTYVDSIVAVNGEN 364 (382)
Q Consensus 349 ~~~~y~~SLv~~~~~~ 364 (382)
.+......|.-+.+..
T Consensus 316 ~~~~~~~~iyv~GG~~ 331 (346)
T TIGR03547 316 VSVSWNNGVLLIGGEN 331 (346)
T ss_pred EEEEcCCEEEEEeccC
Confidence 4445566666666544
No 13
>PHA03098 kelch-like protein; Provisional
Probab=99.21 E-value=8.8e-10 Score=109.18 Aligned_cols=222 Identities=12% Similarity=0.057 Sum_probs=137.5
Q ss_pred eEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEECCCCCeeeecCCCCee
Q 045675 122 AFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYSTSTGKWKEVAAGTGSC 201 (382)
Q Consensus 122 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~~~ 201 (382)
.+.-+|+.+++|..+++.+... .++.....+...|++...........+..|++.+++|...+.++.++
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R 333 (534)
T PHA03098 265 NYITNYSPLSEINTIIDIHYVY-----------CFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPR 333 (534)
T ss_pred eeeecchhhhhcccccCccccc-----------cceEEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCccc
Confidence 4556789999999887665321 11111112233333322211112347899999999999988875444
Q ss_pred EEeCCcceEEECceEEEEeecccccccccEEEEEECCCceeeEe-CCCCCCCCCeeeEEEeCCeEEEEEecCCCccCCCC
Q 045675 202 VIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRT-AMPELPTDCYVKALSYDQSLALAVYPGLGFRSRLS 280 (382)
Q Consensus 202 ~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P~~~~~~~~~l~~~~g~L~~~~~~~~~~~~~~~ 280 (382)
.. ..++.++|.+|.+++.... .....+..||+.+++|+.+ ++|..+ .....+..+|+|+++++. .......
T Consensus 334 ~~---~~~~~~~~~lyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~~lp~~r--~~~~~~~~~~~iYv~GG~--~~~~~~~ 405 (534)
T PHA03098 334 KN---PGVTVFNNRIYVIGGIYNS-ISLNTVESWKPGESKWREEPPLIFPR--YNPCVVNVNNLIYVIGGI--SKNDELL 405 (534)
T ss_pred cc---ceEEEECCEEEEEeCCCCC-EecceEEEEcCCCCceeeCCCcCcCC--ccceEEEECCEEEEECCc--CCCCccc
Confidence 33 5788999999999986522 1345789999999999988 566554 445667889999999885 2111112
Q ss_pred CeEEEEEECCCCCeeEEEEeecCCcccceEEeeCCcEEEEEcC----------eEEEEeCCCCcEEEEeeeCCCCCeEEE
Q 045675 281 NRFELWVMNEGKGWTRTFNTAFERIAWPVGSFRDSKIIMKSVD----------QFFLFNPKTKRNFILPIDSGMGYSYKV 350 (382)
Q Consensus 281 ~~~~iW~l~~~~~W~~~~~i~~~~~~~~~~~~~~g~l~l~~~~----------~~~~yd~~t~~~~~v~~~~~~~~~~~~ 350 (382)
..+++|..+.. .|.....++...... ..+..++.||+..+. .+.+||+++++|+.+............
T Consensus 406 ~~v~~yd~~t~-~W~~~~~~p~~r~~~-~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~ 483 (534)
T PHA03098 406 KTVECFSLNTN-KWSKGSPLPISHYGG-CAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASL 483 (534)
T ss_pred ceEEEEeCCCC-eeeecCCCCccccCc-eEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceE
Confidence 34444444332 499887665443322 233346677776642 389999999999998633222212344
Q ss_pred EEEeeceeecCCCC
Q 045675 351 FTYVDSIVAVNGEN 364 (382)
Q Consensus 351 ~~y~~SLv~~~~~~ 364 (382)
..+...|.-+++..
T Consensus 484 ~~~~~~iyv~GG~~ 497 (534)
T PHA03098 484 CIFNNKIYVVGGDK 497 (534)
T ss_pred EEECCEEEEEcCCc
Confidence 55555666555443
No 14
>PLN02193 nitrile-specifier protein
Probab=99.15 E-value=5e-09 Score=101.65 Aligned_cols=217 Identities=9% Similarity=0.010 Sum_probs=130.2
Q ss_pred ccCceEEEeeCCC-----CceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCE
Q 045675 106 SCNGLLCLDVSSA-----FGMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAI 180 (382)
Q Consensus 106 s~~Gll~~~~~~~-----~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~ 180 (382)
..++.|.+..+.. ....++++||.+.+|..+|+....+.. .. ..+.+... .+...|++... .......
T Consensus 173 ~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~--~~--~~~~~v~~--~~~lYvfGG~~-~~~~~nd 245 (470)
T PLN02193 173 QVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHL--SC--LGVRMVSI--GSTLYVFGGRD-ASRQYNG 245 (470)
T ss_pred EECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCC--cc--cceEEEEE--CCEEEEECCCC-CCCCCcc
Confidence 3455565544421 024589999999999988754211110 00 01111111 12233333222 1123358
Q ss_pred EEEEECCCCCeeeecCC---CCeeEEeCCcceEEECceEEEEeecccccccccEEEEEECCCceeeEeCCCCCCC--CCe
Q 045675 181 AEVYSTSTGKWKEVAAG---TGSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRTAMPELPT--DCY 255 (382)
Q Consensus 181 ~~vyss~t~~W~~~~~~---~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~--~~~ 255 (382)
+++|++.+++|+.++.+ +.++.. +.++.+++++|.+++..... ....+.+||+.+++|+.++.|.... ...
T Consensus 246 v~~yD~~t~~W~~l~~~~~~P~~R~~---h~~~~~~~~iYv~GG~~~~~-~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~ 321 (470)
T PLN02193 246 FYSFDTTTNEWKLLTPVEEGPTPRSF---HSMAADEENVYVFGGVSATA-RLKTLDSYNIVDKKWFHCSTPGDSFSIRGG 321 (470)
T ss_pred EEEEECCCCEEEEcCcCCCCCCCccc---eEEEEECCEEEEECCCCCCC-CcceEEEEECCCCEEEeCCCCCCCCCCCCC
Confidence 99999999999998766 333433 57788999999998864321 2356889999999999886543211 134
Q ss_pred eeEEEeCCeEEEEEecCCCccCCCCCeEEEEEECCCC-CeeEEEEe---ecCCcccceEEeeCCcEEEEEcC--------
Q 045675 256 VKALSYDQSLALAVYPGLGFRSRLSNRFELWVMNEGK-GWTRTFNT---AFERIAWPVGSFRDSKIIMKSVD-------- 323 (382)
Q Consensus 256 ~~l~~~~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~-~W~~~~~i---~~~~~~~~~~~~~~g~l~l~~~~-------- 323 (382)
..++..+|+|+++... .. ...-.+|.++-.. .|+++..+ |.........+ -++.|++....
T Consensus 322 ~~~~~~~gkiyviGG~--~g----~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~ 394 (470)
T PLN02193 322 AGLEVVQGKVWVVYGF--NG----CEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAA-VGKHIVIFGGEIAMDPLAH 394 (470)
T ss_pred cEEEEECCcEEEEECC--CC----CccCceEEEECCCCEEEEeccCCCCCCCcceeEEEE-ECCEEEEECCccCCccccc
Confidence 5567789999999886 21 1123456665443 49998765 22222222333 35567665541
Q ss_pred --------eEEEEeCCCCcEEEEee
Q 045675 324 --------QFFLFNPKTKRNFILPI 340 (382)
Q Consensus 324 --------~~~~yd~~t~~~~~v~~ 340 (382)
.+++||+.+++|+++..
T Consensus 395 ~~~~~~~ndv~~~D~~t~~W~~~~~ 419 (470)
T PLN02193 395 VGPGQLTDGTFALDTETLQWERLDK 419 (470)
T ss_pred cCccceeccEEEEEcCcCEEEEccc
Confidence 48999999999999863
No 15
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.15 E-value=1.8e-08 Score=93.24 Aligned_cols=220 Identities=9% Similarity=0.029 Sum_probs=128.8
Q ss_pred eEEEE-ccccc-ceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEECCCCCe----eeec
Q 045675 122 AFVLW-NPATN-EFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYSTSTGKW----KEVA 195 (382)
Q Consensus 122 ~~~V~-NP~T~-~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vyss~t~~W----~~~~ 195 (382)
.++++ +|..+ +|..++++|..... ..+..+ .+...|++... .......++.|+..++.| +..+
T Consensus 40 ~v~~~~~~~~~~~W~~~~~lp~~r~~-------~~~~~~---~~~lyviGG~~-~~~~~~~v~~~d~~~~~w~~~~~~~~ 108 (323)
T TIGR03548 40 GIYIAKDENSNLKWVKDGQLPYEAAY-------GASVSV---ENGIYYIGGSN-SSERFSSVYRITLDESKEELICETIG 108 (323)
T ss_pred eeEEEecCCCceeEEEcccCCccccc-------eEEEEE---CCEEEEEcCCC-CCCCceeEEEEEEcCCceeeeeeEcC
Confidence 45655 45433 79998877754311 111111 23333333322 122235889999999988 5555
Q ss_pred CCCCeeEEeCCcceEEECceEEEEeecccccccccEEEEEECCCceeeEeC-CCCCCCCCeeeEEEeCCeEEEEEecCCC
Q 045675 196 AGTGSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRTA-MPELPTDCYVKALSYDQSLALAVYPGLG 274 (382)
Q Consensus 196 ~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~-~P~~~~~~~~~l~~~~g~L~~~~~~~~~ 274 (382)
.++.++.. +.++.++|++|.+++..... ....+.+||+.+++|+.++ +|.... .....+..+++|++++.. .
T Consensus 109 ~lp~~~~~---~~~~~~~~~iYv~GG~~~~~-~~~~v~~yd~~~~~W~~~~~~p~~~r-~~~~~~~~~~~iYv~GG~--~ 181 (323)
T TIGR03548 109 NLPFTFEN---GSACYKDGTLYVGGGNRNGK-PSNKSYLFNLETQEWFELPDFPGEPR-VQPVCVKLQNELYVFGGG--S 181 (323)
T ss_pred CCCcCccC---ceEEEECCEEEEEeCcCCCc-cCceEEEEcCCCCCeeECCCCCCCCC-CcceEEEECCEEEEEcCC--C
Confidence 55444333 57788999999998853211 2457999999999999984 664322 344557889999999986 2
Q ss_pred ccCCCCCeEEEEEECCCC-CeeEEEEeecCCc-----ccceEEeeCCcEEEEEc--------------------------
Q 045675 275 FRSRLSNRFELWVMNEGK-GWTRTFNTAFERI-----AWPVGSFRDSKIIMKSV-------------------------- 322 (382)
Q Consensus 275 ~~~~~~~~~~iW~l~~~~-~W~~~~~i~~~~~-----~~~~~~~~~g~l~l~~~-------------------------- 322 (382)
......+|..+-.. .|+++..++.... .....+..++.||+...
T Consensus 182 ----~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (323)
T TIGR03548 182 ----NIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKK 257 (323)
T ss_pred ----CccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHH
Confidence 12223455665432 3998765532111 11112233456666543
Q ss_pred -------------CeEEEEeCCCCcEEEEeeeC-CCCCeEEEEEEeeceeecCCC
Q 045675 323 -------------DQFFLFNPKTKRNFILPIDS-GMGYSYKVFTYVDSIVAVNGE 363 (382)
Q Consensus 323 -------------~~~~~yd~~t~~~~~v~~~~-~~~~~~~~~~y~~SLv~~~~~ 363 (382)
+.+.+||+++++|+.+.-.. .......+......|.-+.+.
T Consensus 258 ~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~ 312 (323)
T TIGR03548 258 EYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPFFARCGAALLLTGNNIFSINGE 312 (323)
T ss_pred HHhCCCccccCcCceEEEEECCCCeeeEcccccccccCchheEEECCEEEEEecc
Confidence 25899999999999986321 111123445555566655543
No 16
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.14 E-value=1.3e-08 Score=96.03 Aligned_cols=242 Identities=10% Similarity=-0.006 Sum_probs=141.1
Q ss_pred eeccCceEEEeeCCCCceeEEEEccc--ccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecC-----C
Q 045675 104 VGSCNGLLCLDVSSAFGMAFVLWNPA--TNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQA-----R 176 (382)
Q Consensus 104 ~~s~~Gll~~~~~~~~~~~~~V~NP~--T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~-----~ 176 (382)
.+..++-|.+..+.. ...++++++. +++|..+|+++..... +++.....+...|++...... .
T Consensus 34 ~~~~~~~iyv~gG~~-~~~~~~~d~~~~~~~W~~l~~~p~~~r~---------~~~~v~~~~~IYV~GG~~~~~~~~~~~ 103 (376)
T PRK14131 34 GAIDNNTVYVGLGSA-GTSWYKLDLNAPSKGWTKIAAFPGGPRE---------QAVAAFIDGKLYVFGGIGKTNSEGSPQ 103 (376)
T ss_pred EEEECCEEEEEeCCC-CCeEEEEECCCCCCCeEECCcCCCCCcc---------cceEEEECCEEEEEcCCCCCCCCCcee
Confidence 455677776654432 3356777764 5789999877632111 111111124444444432100 0
Q ss_pred CCCEEEEEECCCCCeeeecCC-CCeeEEeCCcceEE-ECceEEEEeeccccc----------------------------
Q 045675 177 YDAIAEVYSTSTGKWKEVAAG-TGSCVIYGGQDAVA-VKGVLHWIANGIGVL---------------------------- 226 (382)
Q Consensus 177 ~~~~~~vyss~t~~W~~~~~~-~~~~~~~~~~~~v~-~~G~lywl~~~~~~~---------------------------- 226 (382)
....+++|+..+++|+.++.. +.... + +.++. .+|++|.+++.....
T Consensus 104 ~~~~v~~YD~~~n~W~~~~~~~p~~~~--~-~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~ 180 (376)
T PRK14131 104 VFDDVYKYDPKTNSWQKLDTRSPVGLA--G-HVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDK 180 (376)
T ss_pred EcccEEEEeCCCCEEEeCCCCCCCccc--c-eEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcC
Confidence 124799999999999998753 22221 2 34444 799999998864210
Q ss_pred -----ccccEEEEEECCCceeeEe-CCCCCCCCCeeeEEEeCCeEEEEEecCCCccCCCCCeEEEEEE--CCCC-CeeEE
Q 045675 227 -----VNEKFVVSYDMNLELFWRT-AMPELPTDCYVKALSYDQSLALAVYPGLGFRSRLSNRFELWVM--NEGK-GWTRT 297 (382)
Q Consensus 227 -----~~~~~i~~fD~~~~~~~~i-~~P~~~~~~~~~l~~~~g~L~~~~~~~~~~~~~~~~~~~iW~l--~~~~-~W~~~ 297 (382)
.....+.+||+.+++|+.+ ++|.... ....++..+++|++++..... .....++|.+ +... .|+++
T Consensus 181 ~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~-~~~a~v~~~~~iYv~GG~~~~----~~~~~~~~~~~~~~~~~~W~~~ 255 (376)
T PRK14131 181 KPEDYFFNKEVLSYDPSTNQWKNAGESPFLGT-AGSAVVIKGNKLWLINGEIKP----GLRTDAVKQGKFTGNNLKWQKL 255 (376)
T ss_pred ChhhcCcCceEEEEECCCCeeeECCcCCCCCC-CcceEEEECCEEEEEeeeECC----CcCChhheEEEecCCCcceeec
Confidence 0124799999999999998 5664221 345667789999999986111 1334556544 3332 39998
Q ss_pred EEeecCCc-------ccceEEeeCCcEEEEEcC------------------------eEEEEeCCCCcEEEEeeeCCCCC
Q 045675 298 FNTAFERI-------AWPVGSFRDSKIIMKSVD------------------------QFFLFNPKTKRNFILPIDSGMGY 346 (382)
Q Consensus 298 ~~i~~~~~-------~~~~~~~~~g~l~l~~~~------------------------~~~~yd~~t~~~~~v~~~~~~~~ 346 (382)
..|+.... ....++.-++.||+.... .+-+||+++++|+.+........
T Consensus 256 ~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~r~ 335 (376)
T PRK14131 256 PDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQGLA 335 (376)
T ss_pred CCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCCcc
Confidence 87754321 111123345667766531 24579999999998863322221
Q ss_pred eEEEEEEeeceeecCCC
Q 045675 347 SYKVFTYVDSIVAVNGE 363 (382)
Q Consensus 347 ~~~~~~y~~SLv~~~~~ 363 (382)
...+......|+-+.+.
T Consensus 336 ~~~av~~~~~iyv~GG~ 352 (376)
T PRK14131 336 YGVSVSWNNGVLLIGGE 352 (376)
T ss_pred ceEEEEeCCEEEEEcCC
Confidence 34455566666666654
No 17
>PHA02790 Kelch-like protein; Provisional
Probab=99.12 E-value=6e-09 Score=101.38 Aligned_cols=170 Identities=7% Similarity=-0.000 Sum_probs=121.3
Q ss_pred CCEEEEEECCCCCeeeecCCCCeeEEeCCcceEEECceEEEEeecccccccccEEEEEECCCceeeEe-CCCCCCCCCee
Q 045675 178 DAIAEVYSTSTGKWKEVAAGTGSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRT-AMPELPTDCYV 256 (382)
Q Consensus 178 ~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P~~~~~~~~ 256 (382)
...++.|++.+++|..++.++.++.. ..++.++|.+|.+++... ...+..||+.+++|..+ ++|..+ ...
T Consensus 286 ~~~v~~Ydp~~~~W~~~~~m~~~r~~---~~~v~~~~~iYviGG~~~----~~sve~ydp~~n~W~~~~~l~~~r--~~~ 356 (480)
T PHA02790 286 HNNAIAVNYISNNWIPIPPMNSPRLY---ASGVPANNKLYVVGGLPN----PTSVERWFHGDAAWVNMPSLLKPR--CNP 356 (480)
T ss_pred CCeEEEEECCCCEEEECCCCCchhhc---ceEEEECCEEEEECCcCC----CCceEEEECCCCeEEECCCCCCCC--ccc
Confidence 35789999999999999988654433 467889999999998642 24689999999999988 666555 456
Q ss_pred eEEEeCCeEEEEEecCCCccCCCCCeEEEEEECCCCCeeEEEEeecCCcccceEEeeCCcEEEEEcCeEEEEeCCCCcEE
Q 045675 257 KALSYDQSLALAVYPGLGFRSRLSNRFELWVMNEGKGWTRTFNTAFERIAWPVGSFRDSKIIMKSVDQFFLFNPKTKRNF 336 (382)
Q Consensus 257 ~l~~~~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~W~~~~~i~~~~~~~~~~~~~~g~l~l~~~~~~~~yd~~t~~~~ 336 (382)
..++++|+|+++++. .. ....++.|..+.+ .|+.+..++........+ .-+|.||+..+ .+.+||+++++|+
T Consensus 357 ~~~~~~g~IYviGG~--~~---~~~~ve~ydp~~~-~W~~~~~m~~~r~~~~~~-~~~~~IYv~GG-~~e~ydp~~~~W~ 428 (480)
T PHA02790 357 AVASINNVIYVIGGH--SE---TDTTTEYLLPNHD-QWQFGPSTYYPHYKSCAL-VFGRRLFLVGR-NAEFYCESSNTWT 428 (480)
T ss_pred EEEEECCEEEEecCc--CC---CCccEEEEeCCCC-EEEeCCCCCCccccceEE-EECCEEEEECC-ceEEecCCCCcEe
Confidence 778999999999986 31 2345677755443 599987776544333233 34666776654 5678999999999
Q ss_pred EEeeeCCCCCeEEEEEEeeceeecCCCC
Q 045675 337 ILPIDSGMGYSYKVFTYVDSIVAVNGEN 364 (382)
Q Consensus 337 ~v~~~~~~~~~~~~~~y~~SLv~~~~~~ 364 (382)
.+...........+..+...|.-+++.+
T Consensus 429 ~~~~m~~~r~~~~~~v~~~~IYviGG~~ 456 (480)
T PHA02790 429 LIDDPIYPRDNPELIIVDNKLLLIGGFY 456 (480)
T ss_pred EcCCCCCCccccEEEEECCEEEEECCcC
Confidence 9864333222456667777777776654
No 18
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.97 E-value=4.5e-10 Score=71.99 Aligned_cols=43 Identities=21% Similarity=0.420 Sum_probs=37.1
Q ss_pred CCCCCHHHHHHHHhcCChhhhhhhhccchhhHhhcCCHHHHHH
Q 045675 9 VSSVPLVIITDILLQLPIKSIVRFKCVSKSWLLLIKSSEFVTA 51 (382)
Q Consensus 9 ~~~LP~dll~~IL~rLp~~sl~r~r~VcK~W~~li~sp~F~~~ 51 (382)
|..||+|++.+||+.|+++++.++++|||+|+.++.++.+-+.
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~ 43 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRR 43 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhh
Confidence 5789999999999999999999999999999999988765544
No 19
>PLN02153 epithiospecifier protein
Probab=98.96 E-value=9.9e-08 Score=89.02 Aligned_cols=189 Identities=12% Similarity=0.019 Sum_probs=110.5
Q ss_pred eeccCceEEEeeCCC---CceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCC----
Q 045675 104 VGSCNGLLCLDVSSA---FGMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQAR---- 176 (382)
Q Consensus 104 ~~s~~Gll~~~~~~~---~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~---- 176 (382)
..++++.|.+..+.. ....++++||.|++|..+++++..... ... ..+.... ..+...|++.......
T Consensus 81 ~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p-~~R--~~~~~~~--~~~~iyv~GG~~~~~~~~~~ 155 (341)
T PLN02153 81 MVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGP-EAR--TFHSMAS--DENHVYVFGGVSKGGLMKTP 155 (341)
T ss_pred EEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCC-CCc--eeeEEEE--ECCEEEEECCccCCCccCCC
Confidence 455677776665531 134689999999999998865211000 000 1111111 1233444444321110
Q ss_pred -CCCEEEEEECCCCCeeeecCCC-CeeEEeCCcceEEECceEEEEeecccc-------cccccEEEEEECCCceeeEeC-
Q 045675 177 -YDAIAEVYSTSTGKWKEVAAGT-GSCVIYGGQDAVAVKGVLHWIANGIGV-------LVNEKFVVSYDMNLELFWRTA- 246 (382)
Q Consensus 177 -~~~~~~vyss~t~~W~~~~~~~-~~~~~~~~~~~v~~~G~lywl~~~~~~-------~~~~~~i~~fD~~~~~~~~i~- 246 (382)
....+++|+..+++|+.++.+. .+... ..+..+.++|++|.+.+.... ......+.+||+.+++|+.+.
T Consensus 156 ~~~~~v~~yd~~~~~W~~l~~~~~~~~~r-~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~ 234 (341)
T PLN02153 156 ERFRTIEAYNIADGKWVQLPDPGENFEKR-GGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVET 234 (341)
T ss_pred cccceEEEEECCCCeEeeCCCCCCCCCCC-CcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccc
Confidence 1247899999999999987652 11222 224677899999998764210 011246999999999999884
Q ss_pred ---CCCCCCCCeeeEEEeCCeEEEEEecCCCc--cC-CC-CCeEEEEEECCCCC-eeEEEEe
Q 045675 247 ---MPELPTDCYVKALSYDQSLALAVYPGLGF--RS-RL-SNRFELWVMNEGKG-WTRTFNT 300 (382)
Q Consensus 247 ---~P~~~~~~~~~l~~~~g~L~~~~~~~~~~--~~-~~-~~~~~iW~l~~~~~-W~~~~~i 300 (382)
+|..+ .....+..+++|++++...... +. .. ...-++|.++-... |+++...
T Consensus 235 ~g~~P~~r--~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~ 294 (341)
T PLN02153 235 TGAKPSAR--SVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGEC 294 (341)
T ss_pred cCCCCCCc--ceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCC
Confidence 35444 3456678899999999961000 00 00 11227888886534 9988643
No 20
>PLN02193 nitrile-specifier protein
Probab=98.94 E-value=2.4e-07 Score=90.01 Aligned_cols=175 Identities=12% Similarity=0.037 Sum_probs=107.2
Q ss_pred CEEEEEECCCCCeeeecCC--CCeeEEeCCcceEEECceEEEEeecccccccccEEEEEECCCceeeEe-CC---CCCCC
Q 045675 179 AIAEVYSTSTGKWKEVAAG--TGSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRT-AM---PELPT 252 (382)
Q Consensus 179 ~~~~vyss~t~~W~~~~~~--~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~---P~~~~ 252 (382)
..+++|+..+++|...+.. .+.... ..+.++.++++||.+++..... ....+.+||+.+++|+.+ ++ |..+
T Consensus 193 ~~v~~yD~~~~~W~~~~~~g~~P~~~~-~~~~~v~~~~~lYvfGG~~~~~-~~ndv~~yD~~t~~W~~l~~~~~~P~~R- 269 (470)
T PLN02193 193 KHLYVFDLETRTWSISPATGDVPHLSC-LGVRMVSIGSTLYVFGGRDASR-QYNGFYSFDTTTNEWKLLTPVEEGPTPR- 269 (470)
T ss_pred CcEEEEECCCCEEEeCCCCCCCCCCcc-cceEEEEECCEEEEECCCCCCC-CCccEEEEECCCCEEEEcCcCCCCCCCc-
Confidence 4699999999999987654 121111 1246788999999998864321 235789999999999998 33 3333
Q ss_pred CCeeeEEEeCCeEEEEEecCCCccCCCCCeEEEEEECCCC-CeeEEEEe---ecCCcccceEEeeCCcEEEEEc------
Q 045675 253 DCYVKALSYDQSLALAVYPGLGFRSRLSNRFELWVMNEGK-GWTRTFNT---AFERIAWPVGSFRDSKIIMKSV------ 322 (382)
Q Consensus 253 ~~~~~l~~~~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~-~W~~~~~i---~~~~~~~~~~~~~~g~l~l~~~------ 322 (382)
....++..+++|++++.. .. ..... .+|.++-.. .|..+... +...-...+.+. ++.|++...
T Consensus 270 -~~h~~~~~~~~iYv~GG~--~~-~~~~~--~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~-~gkiyviGG~~g~~~ 342 (470)
T PLN02193 270 -SFHSMAADEENVYVFGGV--SA-TARLK--TLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVV-QGKVWVVYGFNGCEV 342 (470)
T ss_pred -cceEEEEECCEEEEECCC--CC-CCCcc--eEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEE-CCcEEEEECCCCCcc
Confidence 345567789999999886 21 11123 344554332 49876432 111112223333 567776654
Q ss_pred CeEEEEeCCCCcEEEEeee---CCCCCeEEEEEEeeceeecCCC
Q 045675 323 DQFFLFNPKTKRNFILPID---SGMGYSYKVFTYVDSIVAVNGE 363 (382)
Q Consensus 323 ~~~~~yd~~t~~~~~v~~~---~~~~~~~~~~~y~~SLv~~~~~ 363 (382)
+.+.+||+++++|+++... +.......+..+...|.-+.+.
T Consensus 343 ~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~ 386 (470)
T PLN02193 343 DDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGE 386 (470)
T ss_pred CceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCc
Confidence 2799999999999998643 1111124444555555555543
No 21
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=98.83 E-value=8.4e-07 Score=83.84 Aligned_cols=152 Identities=15% Similarity=0.096 Sum_probs=96.6
Q ss_pred CEEEEEECCCCCeeeecCCCC-eeEEeCCcceEEECceEEEEeeccccc--ccccEEEEEECCCceeeEe-CCCCCCCC-
Q 045675 179 AIAEVYSTSTGKWKEVAAGTG-SCVIYGGQDAVAVKGVLHWIANGIGVL--VNEKFVVSYDMNLELFWRT-AMPELPTD- 253 (382)
Q Consensus 179 ~~~~vyss~t~~W~~~~~~~~-~~~~~~~~~~v~~~G~lywl~~~~~~~--~~~~~i~~fD~~~~~~~~i-~~P~~~~~- 253 (382)
..+++|+..++.|+..+.++. .+.. +..+.+++++|.+++..... ........||+.+.+|+.+ .+|.....
T Consensus 189 ~~v~~YD~~t~~W~~~~~~p~~~~~~---~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~ 265 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAGESPFLGTAG---SAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGGS 265 (376)
T ss_pred ceEEEEECCCCeeeECCcCCCCCCCc---ceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCcCC
Confidence 479999999999999887643 3322 47788899999999853211 1223455678899999988 56654321
Q ss_pred -----CeeeEEEeCCeEEEEEecCCCccC----------------CCCCeEEEEEECCCCCeeEEEEeecCCcccceEEe
Q 045675 254 -----CYVKALSYDQSLALAVYPGLGFRS----------------RLSNRFELWVMNEGKGWTRTFNTAFERIAWPVGSF 312 (382)
Q Consensus 254 -----~~~~l~~~~g~L~~~~~~~~~~~~----------------~~~~~~~iW~l~~~~~W~~~~~i~~~~~~~~~~~~ 312 (382)
.....++.+|+|++++.. .... .....++++..+.. .|+.+..+|...... .++.
T Consensus 266 ~~~~~~~~~a~~~~~~iyv~GG~--~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~-~W~~~~~lp~~r~~~-~av~ 341 (376)
T PRK14131 266 SQEGVAGAFAGYSNGVLLVAGGA--NFPGARENYQNGKLYAHEGLKKSWSDEIYALVNG-KWQKVGELPQGLAYG-VSVS 341 (376)
T ss_pred cCCccceEeceeECCEEEEeecc--CCCCChhhhhcCCcccccCCcceeehheEEecCC-cccccCcCCCCccce-EEEE
Confidence 112246789999999986 2100 00013455665543 599887776533222 3343
Q ss_pred eCCcEEEEEcC--------eEEEEeCCCCcEEE
Q 045675 313 RDSKIIMKSVD--------QFFLFNPKTKRNFI 337 (382)
Q Consensus 313 ~~g~l~l~~~~--------~~~~yd~~t~~~~~ 337 (382)
-++.||+.... .+..|+++++++..
T Consensus 342 ~~~~iyv~GG~~~~~~~~~~v~~~~~~~~~~~~ 374 (376)
T PRK14131 342 WNNGVLLIGGETAGGKAVSDVTLLSWDGKKLTV 374 (376)
T ss_pred eCCEEEEEcCCCCCCcEeeeEEEEEEcCCEEEE
Confidence 45678777642 68888888776653
No 22
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.82 E-value=1.6e-09 Score=69.84 Aligned_cols=44 Identities=32% Similarity=0.471 Sum_probs=37.7
Q ss_pred CCCCCHHHHHHHHhcCChhhhhhhhccchhhHhhcCCHHHHHHH
Q 045675 9 VSSVPLVIITDILLQLPIKSIVRFKCVSKSWLLLIKSSEFVTAH 52 (382)
Q Consensus 9 ~~~LP~dll~~IL~rLp~~sl~r~r~VcK~W~~li~sp~F~~~~ 52 (382)
+..||+|++.+||.+|+++++.++++|||+|+.++.++.+...+
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~ 46 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKI 46 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHH
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHH
Confidence 46799999999999999999999999999999999999987654
No 23
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=98.78 E-value=9.4e-07 Score=82.67 Aligned_cols=137 Identities=13% Similarity=0.082 Sum_probs=86.1
Q ss_pred CEEEEEECCCCCeeeecCCCC-eeEEeCCcceEEECceEEEEeecccccccccEEEE--EECCCceeeEe-CCCCCCCC-
Q 045675 179 AIAEVYSTSTGKWKEVAAGTG-SCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVS--YDMNLELFWRT-AMPELPTD- 253 (382)
Q Consensus 179 ~~~~vyss~t~~W~~~~~~~~-~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~--fD~~~~~~~~i-~~P~~~~~- 253 (382)
..+++|++.+++|+.++.++. .+.. +.++.++|++|.+++..........+.. +|+.+++|+.+ ++|..+..
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~---~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~ 244 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAG---SAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSS 244 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCC---ceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCCCc
Confidence 579999999999999988753 2322 4677899999999886421111123434 45577799988 56553211
Q ss_pred ----CeeeEEEeCCeEEEEEecCCCccC----------------CCCCeEEEEEECCCCCeeEEEEeecCCcccceEEee
Q 045675 254 ----CYVKALSYDQSLALAVYPGLGFRS----------------RLSNRFELWVMNEGKGWTRTFNTAFERIAWPVGSFR 313 (382)
Q Consensus 254 ----~~~~l~~~~g~L~~~~~~~~~~~~----------------~~~~~~~iW~l~~~~~W~~~~~i~~~~~~~~~~~~~ 313 (382)
.....++++|+|++++.. .... .....+++|..+.. .|+.+..||...... ..+.-
T Consensus 245 ~~~~~~~~a~~~~~~Iyv~GG~--~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~-~W~~~~~lp~~~~~~-~~~~~ 320 (346)
T TIGR03547 245 QEGLAGAFAGISNGVLLVAGGA--NFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNG-KWSKVGKLPQGLAYG-VSVSW 320 (346)
T ss_pred cccccEEeeeEECCEEEEeecC--CCCCchhhhhcCCccccCCCCceeEeeEEEecCC-cccccCCCCCCceee-EEEEc
Confidence 123366889999999986 2100 00125778887754 699998776533222 22333
Q ss_pred CCcEEEEEc
Q 045675 314 DSKIIMKSV 322 (382)
Q Consensus 314 ~g~l~l~~~ 322 (382)
++.|++...
T Consensus 321 ~~~iyv~GG 329 (346)
T TIGR03547 321 NNGVLLIGG 329 (346)
T ss_pred CCEEEEEec
Confidence 566777665
No 24
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.77 E-value=4.4e-09 Score=65.27 Aligned_cols=39 Identities=38% Similarity=0.663 Sum_probs=36.9
Q ss_pred CCHHHHHHHHhcCChhhhhhhhccchhhHhhcCCHHHHH
Q 045675 12 VPLVIITDILLQLPIKSIVRFKCVSKSWLLLIKSSEFVT 50 (382)
Q Consensus 12 LP~dll~~IL~rLp~~sl~r~r~VcK~W~~li~sp~F~~ 50 (382)
||+|++.+||.+|+++++.++++|||+|+.++.++.|.+
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~ 39 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWF 39 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 799999999999999999999999999999999988754
No 25
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=98.73 E-value=1.7e-06 Score=80.08 Aligned_cols=151 Identities=10% Similarity=-0.087 Sum_probs=92.2
Q ss_pred eccCceEEEeeCCC---CceeEEEEcccccce----eccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCC
Q 045675 105 GSCNGLLCLDVSSA---FGMAFVLWNPATNEF----KGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARY 177 (382)
Q Consensus 105 ~s~~Gll~~~~~~~---~~~~~~V~NP~T~~~----~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~ 177 (382)
++.++-|.+..+.. ....++.+|+.+++| ..+|++|..... .. +..+ .+...|++... ....
T Consensus 69 ~~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~------~~-~~~~---~~~iYv~GG~~-~~~~ 137 (323)
T TIGR03548 69 VSVENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFEN------GS-ACYK---DGTLYVGGGNR-NGKP 137 (323)
T ss_pred EEECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccC------ce-EEEE---CCEEEEEeCcC-CCcc
Confidence 34466665554421 135788899999987 678877654321 11 1111 12333333321 1123
Q ss_pred CCEEEEEECCCCCeeeecCCCC-eeEEeCCcceEEECceEEEEeecccccccccEEEEEECCCceeeEeCC-CCC---CC
Q 045675 178 DAIAEVYSTSTGKWKEVAAGTG-SCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRTAM-PEL---PT 252 (382)
Q Consensus 178 ~~~~~vyss~t~~W~~~~~~~~-~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~-P~~---~~ 252 (382)
...+++|++.+++|..++.++. .+.. +.++.++|++|.+++..... ...+.+||+.+++|+.+.. +.. ..
T Consensus 138 ~~~v~~yd~~~~~W~~~~~~p~~~r~~---~~~~~~~~~iYv~GG~~~~~--~~~~~~yd~~~~~W~~~~~~~~~~~p~~ 212 (323)
T TIGR03548 138 SNKSYLFNLETQEWFELPDFPGEPRVQ---PVCVKLQNELYVFGGGSNIA--YTDGYKYSPKKNQWQKVADPTTDSEPIS 212 (323)
T ss_pred CceEEEEcCCCCCeeECCCCCCCCCCc---ceEEEECCEEEEEcCCCCcc--ccceEEEecCCCeeEECCCCCCCCCcee
Confidence 4589999999999999887642 3322 46678999999998764221 2347899999999998843 211 10
Q ss_pred C-CeeeEEEeCCeEEEEEec
Q 045675 253 D-CYVKALSYDQSLALAVYP 271 (382)
Q Consensus 253 ~-~~~~l~~~~g~L~~~~~~ 271 (382)
. ....++..+++|++++..
T Consensus 213 ~~~~~~~~~~~~~iyv~GG~ 232 (323)
T TIGR03548 213 LLGAASIKINESLLLCIGGF 232 (323)
T ss_pred ccceeEEEECCCEEEEECCc
Confidence 0 223345568999999886
No 26
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=98.41 E-value=1.1e-05 Score=69.11 Aligned_cols=221 Identities=12% Similarity=0.096 Sum_probs=133.1
Q ss_pred ceeEEEEcccccceec------cCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeec-CCCCCEEEEEECCCCCee
Q 045675 120 GMAFVLWNPATNEFKG------LPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQ-ARYDAIAEVYSTSTGKWK 192 (382)
Q Consensus 120 ~~~~~V~NP~T~~~~~------LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~-~~~~~~~~vyss~t~~W~ 192 (382)
...++-++|-|.+|+. +|+....+. ++-+| +...|++.+..+ ......+++++..|..||
T Consensus 104 CN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHs--------AcV~g-----n~MyiFGGye~~a~~FS~d~h~ld~~TmtWr 170 (392)
T KOG4693|consen 104 CNLLYEFDPETNVWKKPEVEGFVPGARDGHS--------ACVWG-----NQMYIFGGYEEDAQRFSQDTHVLDFATMTWR 170 (392)
T ss_pred cceeeeeccccccccccceeeecCCccCCce--------eeEEC-----cEEEEecChHHHHHhhhccceeEeccceeee
Confidence 4457888999999986 444444321 11222 344555544322 224568999999999999
Q ss_pred eecCC-CCeeEEeCCcceEEECceEEEEeeccccc--------ccccEEEEEECCCceeeEeC----CCCCCCCCeeeEE
Q 045675 193 EVAAG-TGSCVIYGGQDAVAVKGVLHWIANGIGVL--------VNEKFVVSYDMNLELFWRTA----MPELPTDCYVKAL 259 (382)
Q Consensus 193 ~~~~~-~~~~~~~~~~~~v~~~G~lywl~~~~~~~--------~~~~~i~~fD~~~~~~~~i~----~P~~~~~~~~~l~ 259 (382)
.+... .+++.. .-+.++.++|.+|-.+++.... ..-..|++||+.|+.|...+ .|..+ ......
T Consensus 171 ~~~Tkg~PprwR-DFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GR--RSHS~f 247 (392)
T KOG4693|consen 171 EMHTKGDPPRWR-DFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGR--RSHSTF 247 (392)
T ss_pred ehhccCCCchhh-hhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcc--cccceE
Confidence 98766 222222 3378889999999999876532 23458999999999998762 23322 455667
Q ss_pred EeCCeEEEEEecCCCccCCCCCeEEEEEECCCCC-eeEEEEee-cCC-cccceEEeeCCcEEEEEcCeEEEEeCC-----
Q 045675 260 SYDQSLALAVYPGLGFRSRLSNRFELWVMNEGKG-WTRTFNTA-FER-IAWPVGSFRDSKIIMKSVDQFFLFNPK----- 331 (382)
Q Consensus 260 ~~~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~-W~~~~~i~-~~~-~~~~~~~~~~g~l~l~~~~~~~~yd~~----- 331 (382)
+++|++++++.. .. .-...--++|.++.... |.+...-. .+. -.+..++.-++++++.....-....+-
T Consensus 248 vYng~~Y~FGGY--ng-~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v~g~kv~LFGGTsP~~~~~~Spt~~ 324 (392)
T KOG4693|consen 248 VYNGKMYMFGGY--NG-TLNVHFNDLYCFDPKTSMWSVISVRGKYPSARRRQCSVVSGGKVYLFGGTSPLPCHPLSPTNY 324 (392)
T ss_pred EEcceEEEeccc--ch-hhhhhhcceeecccccchheeeeccCCCCCcccceeEEEECCEEEEecCCCCCCCCCCCcccc
Confidence 899999999987 31 11123347899887644 98765331 111 145566666777887776522111111
Q ss_pred CCcEEEEeeeCCCCCeEEEEEEeeceeecC
Q 045675 332 TKRNFILPIDSGMGYSYKVFTYVDSIVAVN 361 (382)
Q Consensus 332 t~~~~~v~~~~~~~~~~~~~~y~~SLv~~~ 361 (382)
++......+-. .+-..+.-|.|||-.+.
T Consensus 325 ~G~~~~~~LiD--~SDLHvLDF~PsLKTLa 352 (392)
T KOG4693|consen 325 NGMISPSGLID--LSDLHVLDFAPSLKTLA 352 (392)
T ss_pred CCCCCcccccc--cccceeeecChhHHHHH
Confidence 11111111111 12367788888886654
No 27
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=98.41 E-value=5.9e-06 Score=70.84 Aligned_cols=211 Identities=12% Similarity=0.089 Sum_probs=126.8
Q ss_pred ceeEEEEcccccceeccCCCCCccc-c--ccceeEEEEEEEeeCCCCCeEEEEEEe----ecCC-----CCCEEEEEECC
Q 045675 120 GMAFVLWNPATNEFKGLPTPSLTES-R--LKTFWMVSLGFGFNQDTNDYVLVRIVN----FQAR-----YDAIAEVYSTS 187 (382)
Q Consensus 120 ~~~~~V~NP~T~~~~~LP~~~~~~~-~--~~~~~~~~~~~g~d~~~~~ykvv~~~~----~~~~-----~~~~~~vyss~ 187 (382)
+..+.+.|..+-+|..+|+--.... . ..-..+.++| ..||.+-+ ++.+ .-..+..|+++
T Consensus 43 piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYG---------HtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~ 113 (392)
T KOG4693|consen 43 PIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYG---------HTVVEYQDKAYVWGGRNDDEGACNLLYEFDPE 113 (392)
T ss_pred cceeEEeeccceeEEecCcccccccccCCCCccchhhcC---------ceEEEEcceEEEEcCccCcccccceeeeeccc
Confidence 5678999999999999998422110 0 0000001111 22332211 1111 12378889999
Q ss_pred CCCeeeecCC---CCeeEEeCCcceEEECceEEEEeecccc-cccccEEEEEECCCceeeEeC---CCCCCCCCeeeEEE
Q 045675 188 TGKWKEVAAG---TGSCVIYGGQDAVAVKGVLHWIANGIGV-LVNEKFVVSYDMNLELFWRTA---MPELPTDCYVKALS 260 (382)
Q Consensus 188 t~~W~~~~~~---~~~~~~~~~~~~v~~~G~lywl~~~~~~-~~~~~~i~~fD~~~~~~~~i~---~P~~~~~~~~~l~~ 260 (382)
++.|.+.+.. |+.+ .++.+++++..+|-.++.... ..+..-+-+||+.|.+|+.+. .|+.-. ......+
T Consensus 114 t~~W~~p~v~G~vPgaR---DGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwR-DFH~a~~ 189 (392)
T KOG4693|consen 114 TNVWKKPEVEGFVPGAR---DGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWR-DFHTASV 189 (392)
T ss_pred cccccccceeeecCCcc---CCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchhh-hhhhhhh
Confidence 9999986554 3333 347899999999999886532 234457889999999999983 344432 2344567
Q ss_pred eCCeEEEEEecCCCccC----CCCCeEEEEEECCCCC-eeEEEEeecCCc--ccceEEeeCCcEEEEEcC---------e
Q 045675 261 YDQSLALAVYPGLGFRS----RLSNRFELWVMNEGKG-WTRTFNTAFERI--AWPVGSFRDSKIIMKSVD---------Q 324 (382)
Q Consensus 261 ~~g~L~~~~~~~~~~~~----~~~~~~~iW~l~~~~~-W~~~~~i~~~~~--~~~~~~~~~g~l~l~~~~---------~ 324 (382)
++|..++++...+..+. .+.-.-+|-.++-..+ |.+...-.+... ..-..+..+|++++.... .
T Consensus 190 ~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGYng~ln~Hfnd 269 (392)
T KOG4693|consen 190 IDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYNGKMYMFGGYNGTLNVHFND 269 (392)
T ss_pred ccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEEcceEEEecccchhhhhhhcc
Confidence 78999999887322111 0111223444443323 887643222111 222334458888876652 7
Q ss_pred EEEEeCCCCcEEEEeeeCC
Q 045675 325 FFLFNPKTKRNFILPIDSG 343 (382)
Q Consensus 325 ~~~yd~~t~~~~~v~~~~~ 343 (382)
++.||++|..|..|...+.
T Consensus 270 Ly~FdP~t~~W~~I~~~Gk 288 (392)
T KOG4693|consen 270 LYCFDPKTSMWSVISVRGK 288 (392)
T ss_pred eeecccccchheeeeccCC
Confidence 9999999999999987643
No 28
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=98.18 E-value=0.00016 Score=65.93 Aligned_cols=211 Identities=13% Similarity=0.151 Sum_probs=126.0
Q ss_pred ceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeec--CCC-----C-CEEEEEECCCCCe
Q 045675 120 GMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQ--ARY-----D-AIAEVYSTSTGKW 191 (382)
Q Consensus 120 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~--~~~-----~-~~~~vyss~t~~W 191 (382)
...+|++|--+.+|+.+-.+..++.+ ..+.....++. ++.+++.. +.. + ..+.+|++.+++|
T Consensus 97 YndLy~Yn~k~~eWkk~~spn~P~pR------sshq~va~~s~----~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkw 166 (521)
T KOG1230|consen 97 YNDLYSYNTKKNEWKKVVSPNAPPPR------SSHQAVAVPSN----ILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKW 166 (521)
T ss_pred eeeeeEEeccccceeEeccCCCcCCC------ccceeEEeccC----eEEEeccccCCcchhhhhhhhheeeeeeccchh
Confidence 34689999999999986433332222 12223333433 22222211 111 1 2788999999999
Q ss_pred eeecCCCCeeEEeCCcceEEECceEEEEeeccccc---ccccEEEEEECCCceeeEeCCCCCCC--CCeeeEEEe-CCeE
Q 045675 192 KEVAAGTGSCVIYGGQDAVAVKGVLHWIANGIGVL---VNEKFVVSYDMNLELFWRTAMPELPT--DCYVKALSY-DQSL 265 (382)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~---~~~~~i~~fD~~~~~~~~i~~P~~~~--~~~~~l~~~-~g~L 265 (382)
..+...-.+... .+++.|.....|.-.++-.... ..-.-+.+||+.+=+|+.+..+.... .+.+.+.+. +|.+
T Consensus 167 eql~~~g~PS~R-SGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i 245 (521)
T KOG1230|consen 167 EQLEFGGGPSPR-SGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGI 245 (521)
T ss_pred eeeccCCCCCCC-ccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcE
Confidence 998776222222 2256776666655555422211 12346899999999999995543211 144555555 8999
Q ss_pred EEEEecCCCc----cCCCCCeEEEEEECCCCC------eeEEEEeecC---CcccceEEeeCCc-EEEEE--c-------
Q 045675 266 ALAVYPGLGF----RSRLSNRFELWVMNEGKG------WTRTFNTAFE---RIAWPVGSFRDSK-IIMKS--V------- 322 (382)
Q Consensus 266 ~~~~~~~~~~----~~~~~~~~~iW~l~~~~~------W~~~~~i~~~---~~~~~~~~~~~g~-l~l~~--~------- 322 (382)
+|.++..+.. .+.....-..|.|+...+ |.++..+.+. ...-.+++++++. ++|.. +
T Consensus 246 ~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV~D~eeeeEs 325 (521)
T KOG1230|consen 246 VVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGVCDLEEEEES 325 (521)
T ss_pred EEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEecceecccccchh
Confidence 9988863311 122345668899975432 8888766432 2244566777766 44432 1
Q ss_pred ------CeEEEEeCCCCcEEEEeee
Q 045675 323 ------DQFFLFNPKTKRNFILPID 341 (382)
Q Consensus 323 ------~~~~~yd~~t~~~~~v~~~ 341 (382)
+.++.||+..++|....+.
T Consensus 326 l~g~F~NDLy~fdlt~nrW~~~qlq 350 (521)
T KOG1230|consen 326 LSGEFFNDLYFFDLTRNRWSEGQLQ 350 (521)
T ss_pred hhhhhhhhhhheecccchhhHhhhc
Confidence 1699999999999987655
No 29
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=97.64 E-value=0.0029 Score=61.70 Aligned_cols=201 Identities=9% Similarity=-0.035 Sum_probs=122.7
Q ss_pred eEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeec-CCCCCEEEEEECCCCCeeeecCC---
Q 045675 122 AFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQ-ARYDAIAEVYSTSTGKWKEVAAG--- 197 (382)
Q Consensus 122 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~-~~~~~~~~vyss~t~~W~~~~~~--- 197 (382)
.++++|--+..|.........+.. .........+ ++-++...... ......+..|+..|++|+.....
T Consensus 89 dl~~~d~~~~~w~~~~~~g~~p~~--r~g~~~~~~~------~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~ 160 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATGDEPSP--RYGHSLSAVG------DKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDP 160 (482)
T ss_pred eeEEeecCCcccccccccCCCCCc--ccceeEEEEC------CeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCC
Confidence 599999999888876543332211 0000111111 22222222211 22335899999999999987666
Q ss_pred CCeeEEeCCcceEEECceEEEEeecccccccccEEEEEECCCceeeEeCC----CCCCCCCeeeEEEeCCeEEEEEecCC
Q 045675 198 TGSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRTAM----PELPTDCYVKALSYDQSLALAVYPGL 273 (382)
Q Consensus 198 ~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~----P~~~~~~~~~l~~~~g~L~~~~~~~~ 273 (382)
|+.+.. +.++..+-++|..++.+........+.+||+.+.+|..+.. |..+ ....+++.+++++++...
T Consensus 161 P~~r~~---Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR--~gH~~~~~~~~~~v~gG~-- 233 (482)
T KOG0379|consen 161 PPPRAG---HSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPR--YGHAMVVVGNKLLVFGGG-- 233 (482)
T ss_pred CCCccc---ceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCC--CCceEEEECCeEEEEecc--
Confidence 233332 67888888888888876544456789999999999999843 3322 456778889999999987
Q ss_pred CccCCCCCeEEEEEECCCCC-eeEEEEe---ecCCcccceEEeeCCcEEEEEcC---------eEEEEeCCCCcEEEEee
Q 045675 274 GFRSRLSNRFELWVMNEGKG-WTRTFNT---AFERIAWPVGSFRDSKIIMKSVD---------QFFLFNPKTKRNFILPI 340 (382)
Q Consensus 274 ~~~~~~~~~~~iW~l~~~~~-W~~~~~i---~~~~~~~~~~~~~~g~l~l~~~~---------~~~~yd~~t~~~~~v~~ 340 (382)
.. .....=.+|.++-... |.++... +-........+. +..+++.... .++.||++++.|.++..
T Consensus 234 ~~--~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~~~-~~~~~l~gG~~~~~~~~l~~~~~l~~~~~~w~~~~~ 310 (482)
T KOG0379|consen 234 DD--GDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLTVS-GDHLLLFGGGTDPKQEPLGDLYGLDLETLVWSKVES 310 (482)
T ss_pred cc--CCceecceEeeecccceeeeccccCCCCCCcceeeeEEE-CCEEEEEcCCcccccccccccccccccccceeeeec
Confidence 21 1233447788776533 8855433 222223334433 2234444322 57899999999999853
No 30
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=97.60 E-value=0.0016 Score=58.20 Aligned_cols=44 Identities=20% Similarity=0.304 Sum_probs=39.6
Q ss_pred CCCCC----HHHHHHHHhcCChhhhhhhhccchhhHhhcCCHHHHHHH
Q 045675 9 VSSVP----LVIITDILLQLPIKSIVRFKCVSKSWLLLIKSSEFVTAH 52 (382)
Q Consensus 9 ~~~LP----~dll~~IL~rLp~~sl~r~r~VcK~W~~li~sp~F~~~~ 52 (382)
+..|| +++.+.||+.|...+|..|..|||+|+.+++++-.-+.-
T Consensus 75 i~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKkL 122 (499)
T KOG0281|consen 75 ITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKKL 122 (499)
T ss_pred HHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHHH
Confidence 35689 999999999999999999999999999999998776653
No 31
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=97.54 E-value=0.0026 Score=62.01 Aligned_cols=167 Identities=12% Similarity=-0.024 Sum_probs=104.4
Q ss_pred eeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCC-CCCEEEEEECCCCCeeeecCC-C
Q 045675 121 MAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQAR-YDAIAEVYSTSTGKWKEVAAG-T 198 (382)
Q Consensus 121 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~-~~~~~~vyss~t~~W~~~~~~-~ 198 (382)
..+..+|+.|++|..+.+....+.. . ..+.+... +++-+|........ ....++||+..+.+|.++... +
T Consensus 139 ~~l~~~d~~t~~W~~l~~~~~~P~~---r--~~Hs~~~~---g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~ 210 (482)
T KOG0379|consen 139 NELHSLDLSTRTWSLLSPTGDPPPP---R--AGHSATVV---GTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGE 210 (482)
T ss_pred hheEeccCCCCcEEEecCcCCCCCC---c--ccceEEEE---CCEEEEECCccCcccceeeeeeeccccccceecccCCC
Confidence 4789999999999998654431111 0 11111111 13333333322122 456999999999999998776 3
Q ss_pred CeeEEeCCcceEEECceEEEEeecccccccccEEEEEECCCceeeEe----CCCCCCCCCeeeEEEeCCeEEEEEecCCC
Q 045675 199 GSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRT----AMPELPTDCYVKALSYDQSLALAVYPGLG 274 (382)
Q Consensus 199 ~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i----~~P~~~~~~~~~l~~~~g~L~~~~~~~~~ 274 (382)
.+.+. ..+..+.+++.++.+.+.........-+..||+.+.+|..+ ..|..+ ....++..+..+.+++.. .
T Consensus 211 ~P~pR-~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R--~~h~~~~~~~~~~l~gG~--~ 285 (482)
T KOG0379|consen 211 APSPR-YGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPR--SGHSLTVSGDHLLLFGGG--T 285 (482)
T ss_pred CCCCC-CCceEEEECCeEEEEeccccCCceecceEeeecccceeeeccccCCCCCCc--ceeeeEEECCEEEEEcCC--c
Confidence 33333 33678888888888777663333556899999999999844 233333 456666777888888887 3
Q ss_pred ccCCCCCeEEEEEECCCCC-eeEEEEee
Q 045675 275 FRSRLSNRFELWVMNEGKG-WTRTFNTA 301 (382)
Q Consensus 275 ~~~~~~~~~~iW~l~~~~~-W~~~~~i~ 301 (382)
.. ....--++|.++..+. |..+..+.
T Consensus 286 ~~-~~~~l~~~~~l~~~~~~w~~~~~~~ 312 (482)
T KOG0379|consen 286 DP-KQEPLGDLYGLDLETLVWSKVESVG 312 (482)
T ss_pred cc-ccccccccccccccccceeeeeccc
Confidence 10 0014567888876545 98886554
No 32
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=7.3e-05 Score=65.73 Aligned_cols=44 Identities=20% Similarity=0.246 Sum_probs=39.3
Q ss_pred CCCCCCCCCHHHHHHHHhcCChhhhhhhhccchhhHhhcCCHHH
Q 045675 5 DTTTVSSVPLVIITDILLQLPIKSIVRFKCVSKSWLLLIKSSEF 48 (382)
Q Consensus 5 ~~~~~~~LP~dll~~IL~rLp~~sl~r~r~VcK~W~~li~sp~F 48 (382)
..-.|..|||||+..||+.|+.|+|.++..|||+|+++.++...
T Consensus 94 pgv~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~l 137 (419)
T KOG2120|consen 94 PGVSWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESL 137 (419)
T ss_pred CCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccc
Confidence 34568899999999999999999999999999999999876554
No 33
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=97.29 E-value=0.049 Score=50.29 Aligned_cols=146 Identities=15% Similarity=0.161 Sum_probs=92.2
Q ss_pred EEEEEECCCCCeeeecCC--CCeeEEeCCcceEEEC-ceEEEEeeccccc-----ccccEEEEEECCCceeeEeCCCCCC
Q 045675 180 IAEVYSTSTGKWKEVAAG--TGSCVIYGGQDAVAVK-GVLHWIANGIGVL-----VNEKFVVSYDMNLELFWRTAMPELP 251 (382)
Q Consensus 180 ~~~vyss~t~~W~~~~~~--~~~~~~~~~~~~v~~~-G~lywl~~~~~~~-----~~~~~i~~fD~~~~~~~~i~~P~~~ 251 (382)
.+..|+..++.|+.+..+ |+++.. +.+|.+- |.+|..++....+ ..-.-+..||+.+.+|..+.++...
T Consensus 99 dLy~Yn~k~~eWkk~~spn~P~pRss---hq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~P 175 (521)
T KOG1230|consen 99 DLYSYNTKKNEWKKVVSPNAPPPRSS---HQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGP 175 (521)
T ss_pred eeeEEeccccceeEeccCCCcCCCcc---ceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCCC
Confidence 788899999999998887 444433 4566555 7555554443221 1112477899999999999776543
Q ss_pred CC-CeeeEEEeCCeEEEEEecCCCccCCCC-CeEEEEEEC--CCCCeeEEEEeec----CCcccceEEeeCCcEEEEEcC
Q 045675 252 TD-CYVKALSYDQSLALAVYPGLGFRSRLS-NRFELWVMN--EGKGWTRTFNTAF----ERIAWPVGSFRDSKIIMKSVD 323 (382)
Q Consensus 252 ~~-~~~~l~~~~g~L~~~~~~~~~~~~~~~-~~~~iW~l~--~~~~W~~~~~i~~----~~~~~~~~~~~~g~l~l~~~~ 323 (382)
.. +..+++....+|.++++. ++..... .-=.||.++ .+ .|.++.. +- ..-...+.+...|.|++..+.
T Consensus 176 S~RSGHRMvawK~~lilFGGF--hd~nr~y~YyNDvy~FdLdty-kW~Klep-sga~PtpRSGcq~~vtpqg~i~vyGGY 251 (521)
T KOG1230|consen 176 SPRSGHRMVAWKRQLILFGGF--HDSNRDYIYYNDVYAFDLDTY-KWSKLEP-SGAGPTPRSGCQFSVTPQGGIVVYGGY 251 (521)
T ss_pred CCCccceeEEeeeeEEEEcce--ecCCCceEEeeeeEEEeccce-eeeeccC-CCCCCCCCCcceEEecCCCcEEEEcch
Confidence 32 667888999999999998 4211111 112455554 44 5999864 32 111333445556777776541
Q ss_pred ----------------eEEEEeCCC
Q 045675 324 ----------------QFFLFNPKT 332 (382)
Q Consensus 324 ----------------~~~~yd~~t 332 (382)
.++..++++
T Consensus 252 sK~~~kK~~dKG~~hsDmf~L~p~~ 276 (521)
T KOG1230|consen 252 SKQRVKKDVDKGTRHSDMFLLKPED 276 (521)
T ss_pred hHhhhhhhhhcCceeeeeeeecCCc
Confidence 588889988
No 34
>PF13964 Kelch_6: Kelch motif
Probab=97.03 E-value=0.002 Score=41.45 Aligned_cols=43 Identities=21% Similarity=0.138 Sum_probs=35.0
Q ss_pred cceEEECceEEEEeecccccccccEEEEEECCCceeeEe-CCCC
Q 045675 207 QDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRT-AMPE 249 (382)
Q Consensus 207 ~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P~ 249 (382)
+.++.++|.+|.+++..........+..||+.+++|+.+ ++|.
T Consensus 5 ~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~ 48 (50)
T PF13964_consen 5 HSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPT 48 (50)
T ss_pred CEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCC
Confidence 478899999999999875323457999999999999998 5554
No 35
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=96.58 E-value=0.0068 Score=38.24 Aligned_cols=42 Identities=24% Similarity=0.162 Sum_probs=35.4
Q ss_pred cceEEECceEEEEeecccccccccEEEEEECCCceeeEe-CCC
Q 045675 207 QDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRT-AMP 248 (382)
Q Consensus 207 ~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P 248 (382)
..++.++|.+|.+++..........+..||+.+++|..+ ++|
T Consensus 5 ~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 5 HAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp EEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred CEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 478899999999999876445678999999999999988 443
No 36
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=96.51 E-value=0.47 Score=41.96 Aligned_cols=122 Identities=13% Similarity=0.147 Sum_probs=83.7
Q ss_pred CCcceEEECceEEEEeecccccccccEEEEEECCCceee-EeCCCCCCCC----------CeeeEEEeCCeEEEEEecCC
Q 045675 205 GGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFW-RTAMPELPTD----------CYVKALSYDQSLALAVYPGL 273 (382)
Q Consensus 205 ~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~-~i~~P~~~~~----------~~~~l~~~~g~L~~~~~~~~ 273 (382)
.+.+.|..||.+|...... ..|+.||+.++... ...+|..... ..+.+++.+..|.++...
T Consensus 70 ~GtG~vVYngslYY~~~~s------~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat-- 141 (250)
T PF02191_consen 70 QGTGHVVYNGSLYYNKYNS------RNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYAT-- 141 (250)
T ss_pred ccCCeEEECCcEEEEecCC------ceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEec--
Confidence 3358899999999987643 58999999999998 7788865431 467789999999999887
Q ss_pred CccCCCCCeEEEEEECCCC-C----eeEEEEeecCCcccceEEeeCCcEEEEEcC------eEEEEeCCCCcEEEEeee
Q 045675 274 GFRSRLSNRFELWVMNEGK-G----WTRTFNTAFERIAWPVGSFRDSKIIMKSVD------QFFLFNPKTKRNFILPID 341 (382)
Q Consensus 274 ~~~~~~~~~~~iW~l~~~~-~----W~~~~~i~~~~~~~~~~~~~~g~l~l~~~~------~~~~yd~~t~~~~~v~~~ 341 (382)
.. ....+.|=.|+..+ . |.-.+ +-.. ..-.+ .-+|.|+..... -.++||..+++-+.+.+.
T Consensus 142 ~~---~~g~ivvskld~~tL~v~~tw~T~~--~k~~-~~naF-mvCGvLY~~~s~~~~~~~I~yafDt~t~~~~~~~i~ 213 (250)
T PF02191_consen 142 ED---NNGNIVVSKLDPETLSVEQTWNTSY--PKRS-AGNAF-MVCGVLYATDSYDTRDTEIFYAFDTYTGKEEDVSIP 213 (250)
T ss_pred CC---CCCcEEEEeeCcccCceEEEEEecc--Cchh-hccee-eEeeEEEEEEECCCCCcEEEEEEECCCCceeceeee
Confidence 31 23468888888652 1 65321 2112 22222 236766665543 357999999988887665
No 37
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=96.45 E-value=0.0019 Score=57.16 Aligned_cols=46 Identities=13% Similarity=0.188 Sum_probs=40.2
Q ss_pred CCCCCHHHHHHHHhcCCh-----hhhhhhhccchhhHhhcCCHHHHHHHHc
Q 045675 9 VSSVPLVIITDILLQLPI-----KSIVRFKCVSKSWLLLIKSSEFVTAHLN 54 (382)
Q Consensus 9 ~~~LP~dll~~IL~rLp~-----~sl~r~r~VcK~W~~li~sp~F~~~~~~ 54 (382)
+..|||||+.+||.+.=. .++.++.+|||.|+-...+|.|-+....
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~ 157 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACL 157 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHH
Confidence 467999999999987654 8999999999999999999999876544
No 38
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.76 E-value=0.17 Score=45.98 Aligned_cols=178 Identities=14% Similarity=0.202 Sum_probs=112.6
Q ss_pred EEEEEECCCCCeeeecCCCCeeEEeCCcceEEECc-eEEEEeeccccc--------------------------------
Q 045675 180 IAEVYSTSTGKWKEVAAGTGSCVIYGGQDAVAVKG-VLHWIANGIGVL-------------------------------- 226 (382)
Q Consensus 180 ~~~vyss~t~~W~~~~~~~~~~~~~~~~~~v~~~G-~lywl~~~~~~~-------------------------------- 226 (382)
.++.|++.+++|...+...+.... + +.++.+++ .+|+.++-....
T Consensus 114 d~Y~y~p~~nsW~kl~t~sP~gl~-G-~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~d 191 (381)
T COG3055 114 DAYRYDPSTNSWHKLDTRSPTGLV-G-ASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAED 191 (381)
T ss_pred eeEEecCCCChhheeccccccccc-c-ceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHH
Confidence 789999999999998887333322 3 46666666 888887654310
Q ss_pred -ccccEEEEEECCCceeeEe-CCCCCCCCCeeeEEEeCCeEEEEEecCCCccCCCCCeEEEEEE--CCCC-CeeEEEEee
Q 045675 227 -VNEKFVVSYDMNLELFWRT-AMPELPTDCYVKALSYDQSLALAVYPGLGFRSRLSNRFELWVM--NEGK-GWTRTFNTA 301 (382)
Q Consensus 227 -~~~~~i~~fD~~~~~~~~i-~~P~~~~~~~~~l~~~~g~L~~~~~~~~~~~~~~~~~~~iW~l--~~~~-~W~~~~~i~ 301 (382)
.....+++||+.+++|+.. ..|.... .-..++..+++|.++....+. ...+-++|+. .... .|.++...|
T Consensus 192 y~~n~ev~sy~p~~n~W~~~G~~pf~~~-aGsa~~~~~n~~~lInGEiKp----GLRt~~~k~~~~~~~~~~w~~l~~lp 266 (381)
T COG3055 192 YFFNKEVLSYDPSTNQWRNLGENPFYGN-AGSAVVIKGNKLTLINGEIKP----GLRTAEVKQADFGGDNLKWLKLSDLP 266 (381)
T ss_pred hcccccccccccccchhhhcCcCcccCc-cCcceeecCCeEEEEcceecC----CccccceeEEEeccCceeeeeccCCC
Confidence 2445799999999999998 5776543 234455567789999887433 3445555554 3331 299986654
Q ss_pred cCC---cccceEEe---eCCcEEEEEc--------------------------CeEEEEeCCCCcEEEEe-eeCCCCCeE
Q 045675 302 FER---IAWPVGSF---RDSKIIMKSV--------------------------DQFFLFNPKTKRNFILP-IDSGMGYSY 348 (382)
Q Consensus 302 ~~~---~~~~~~~~---~~g~l~l~~~--------------------------~~~~~yd~~t~~~~~v~-~~~~~~~~~ 348 (382)
... .....+.. .++++++... +.|+.+| .+.|+.+. ++.+.. .-
T Consensus 267 ~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~GeLp~~l~-YG 343 (381)
T COG3055 267 APIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NGSWKIVGELPQGLA-YG 343 (381)
T ss_pred CCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--CCceeeecccCCCcc-ce
Confidence 321 12222222 1233333321 1577777 88999996 444444 46
Q ss_pred EEEEEeeceeecCCCCchH
Q 045675 349 KVFTYVDSIVAVNGENDEK 367 (382)
Q Consensus 349 ~~~~y~~SLv~~~~~~~~~ 367 (382)
-...|-+.+..+.+.....
T Consensus 344 ~s~~~nn~vl~IGGE~~~G 362 (381)
T COG3055 344 VSLSYNNKVLLIGGETSGG 362 (381)
T ss_pred EEEecCCcEEEEccccCCC
Confidence 6778888998888766553
No 39
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=95.72 E-value=0.033 Score=35.47 Aligned_cols=41 Identities=12% Similarity=0.017 Sum_probs=33.3
Q ss_pred cceEEECceEEEEeec--ccccccccEEEEEECCCceeeEeCC
Q 045675 207 QDAVAVKGVLHWIANG--IGVLVNEKFVVSYDMNLELFWRTAM 247 (382)
Q Consensus 207 ~~~v~~~G~lywl~~~--~~~~~~~~~i~~fD~~~~~~~~i~~ 247 (382)
+.++.++|+||.+++. .........+..||+++++|+.+..
T Consensus 5 hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~ 47 (49)
T PF07646_consen 5 HSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSP 47 (49)
T ss_pred eEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCC
Confidence 5788999999999998 2233456689999999999998843
No 40
>smart00284 OLF Olfactomedin-like domains.
Probab=95.69 E-value=1.3 Score=39.01 Aligned_cols=120 Identities=12% Similarity=0.117 Sum_probs=80.9
Q ss_pred cceEEECceEEEEeecccccccccEEEEEECCCceeeEe-CCCCCC-C---------CCeeeEEEeCCeEEEEEecCCCc
Q 045675 207 QDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRT-AMPELP-T---------DCYVKALSYDQSLALAVYPGLGF 275 (382)
Q Consensus 207 ~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P~~~-~---------~~~~~l~~~~g~L~~~~~~~~~~ 275 (382)
...|+.||.+|...... ..|+.||+.+++.... .+|... . ...+.+++.+..|.++-.. ..
T Consensus 77 tG~VVYngslYY~~~~s------~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat--~~ 148 (255)
T smart00284 77 TGVVVYNGSLYFNKFNS------HDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYAT--EQ 148 (255)
T ss_pred ccEEEECceEEEEecCC------ccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEec--cC
Confidence 58999999999965443 5899999999998643 577432 1 1568899999999999876 21
Q ss_pred cCCCCCeEEEEEECCCC-C----eeEEEEeecCCcccceEEeeCCcEEEEEc----C--eEEEEeCCCCcEEEEeee
Q 045675 276 RSRLSNRFELWVMNEGK-G----WTRTFNTAFERIAWPVGSFRDSKIIMKSV----D--QFFLFNPKTKRNFILPID 341 (382)
Q Consensus 276 ~~~~~~~~~iW~l~~~~-~----W~~~~~i~~~~~~~~~~~~~~g~l~l~~~----~--~~~~yd~~t~~~~~v~~~ 341 (382)
....|.|=+|+... . |.--+ +-.. ....++ -+|.|+.... + -.++||..|++-+.+.+.
T Consensus 149 ---~~g~ivvSkLnp~tL~ve~tW~T~~--~k~s-a~naFm-vCGvLY~~~s~~~~~~~I~yayDt~t~~~~~~~i~ 218 (255)
T smart00284 149 ---NAGKIVISKLNPATLTIENTWITTY--NKRS-ASNAFM-ICGILYVTRSLGSKGEKVFYAYDTNTGKEGHLDIP 218 (255)
T ss_pred ---CCCCEEEEeeCcccceEEEEEEcCC--Cccc-ccccEE-EeeEEEEEccCCCCCcEEEEEEECCCCccceeeee
Confidence 34678888888652 1 55422 2122 222233 3577776653 1 477999999987777665
No 41
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=95.49 E-value=1.6 Score=38.36 Aligned_cols=202 Identities=18% Similarity=0.071 Sum_probs=109.8
Q ss_pred eccCceEEEeeCCCCceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEE
Q 045675 105 GSCNGLLCLDVSSAFGMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVY 184 (382)
Q Consensus 105 ~s~~Gll~~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vy 184 (382)
...+|-|+..+.. ...++.++|.+++...+..+. ..|+.++...+.+. ++.. ....++
T Consensus 8 d~~~g~l~~~D~~--~~~i~~~~~~~~~~~~~~~~~------------~~G~~~~~~~g~l~-v~~~-------~~~~~~ 65 (246)
T PF08450_consen 8 DPRDGRLYWVDIP--GGRIYRVDPDTGEVEVIDLPG------------PNGMAFDRPDGRLY-VADS-------GGIAVV 65 (246)
T ss_dssp ETTTTEEEEEETT--TTEEEEEETTTTEEEEEESSS------------EEEEEEECTTSEEE-EEET-------TCEEEE
T ss_pred ECCCCEEEEEEcC--CCEEEEEECCCCeEEEEecCC------------CceEEEEccCCEEE-EEEc-------CceEEE
Confidence 3446777666654 568999999999876544333 12556663333332 2221 245677
Q ss_pred ECCCCCeeeecCCC-C--eeEEeCCcceEEECceEEEEeecccccccc--cEEEEEECCCceeeEeCCCCCCCCCeeeEE
Q 045675 185 STSTGKWKEVAAGT-G--SCVIYGGQDAVAVKGVLHWIANGIGVLVNE--KFVVSYDMNLELFWRTAMPELPTDCYVKAL 259 (382)
Q Consensus 185 ss~t~~W~~~~~~~-~--~~~~~~~~~~v~~~G~lywl~~~~~~~~~~--~~i~~fD~~~~~~~~i~~P~~~~~~~~~l~ 259 (382)
+..++.++.....+ . .... ...-++--+|.+|.-.......... ..|..+|.. .+.+.+.-... ..-.++
T Consensus 66 d~~~g~~~~~~~~~~~~~~~~~-~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~---~pNGi~ 140 (246)
T PF08450_consen 66 DPDTGKVTVLADLPDGGVPFNR-PNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLG---FPNGIA 140 (246)
T ss_dssp ETTTTEEEEEEEEETTCSCTEE-EEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEES---SEEEEE
T ss_pred ecCCCcEEEEeeccCCCcccCC-CceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcc---cccceE
Confidence 88898887765541 1 1111 1123445578977766544322122 589999999 55554421111 111233
Q ss_pred -EeCCe-EEEEEecCCCccCCCCCeEEEEEECCCCC-eeEEEEe-ecCCc---ccceEEeeCCcEEEEEc--CeEEEEeC
Q 045675 260 -SYDQS-LALAVYPGLGFRSRLSNRFELWVMNEGKG-WTRTFNT-AFERI---AWPVGSFRDSKIIMKSV--DQFFLFNP 330 (382)
Q Consensus 260 -~~~g~-L~~~~~~~~~~~~~~~~~~~iW~l~~~~~-W~~~~~i-~~~~~---~~~~~~~~~g~l~l~~~--~~~~~yd~ 330 (382)
.-+|+ |++.... ...+..+.++...+ +.....+ ++... ..-+++..+|.|++... +++..||+
T Consensus 141 ~s~dg~~lyv~ds~--------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p 212 (246)
T PF08450_consen 141 FSPDGKTLYVADSF--------NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDP 212 (246)
T ss_dssp EETTSSEEEEEETT--------TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEET
T ss_pred ECCcchheeecccc--------cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECC
Confidence 34565 6655544 44544444544323 5443333 43332 33456666788888764 39999999
Q ss_pred CCCcEEEEeee
Q 045675 331 KTKRNFILPID 341 (382)
Q Consensus 331 ~t~~~~~v~~~ 341 (382)
+.+....+.++
T Consensus 213 ~G~~~~~i~~p 223 (246)
T PF08450_consen 213 DGKLLREIELP 223 (246)
T ss_dssp TSCEEEEEE-S
T ss_pred CccEEEEEcCC
Confidence 97778878776
No 42
>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa.
Probab=94.80 E-value=0.27 Score=38.78 Aligned_cols=75 Identities=9% Similarity=0.139 Sum_probs=53.2
Q ss_pred EEEEEECCCc--eeeEeCCCCCCCC------------CeeeEEEeCCeEEEEEecCCCccC--CCCCeEEEEEECCC---
Q 045675 231 FVVSYDMNLE--LFWRTAMPELPTD------------CYVKALSYDQSLALAVYPGLGFRS--RLSNRFELWVMNEG--- 291 (382)
Q Consensus 231 ~i~~fD~~~~--~~~~i~~P~~~~~------------~~~~l~~~~g~L~~~~~~~~~~~~--~~~~~~~iW~l~~~--- 291 (382)
.|+.+|+..+ .++.+++|..... ..-.+++.+|+|-++......... .....+.+|+|...
T Consensus 7 GIL~CD~~~~~p~l~~vpLP~~~~~~~~~~~~~~~~~~~R~v~v~~G~ikfV~i~~~~~~~~~~~~~~vt~Wtl~~~~~~ 86 (131)
T PF07762_consen 7 GILFCDVFDDSPVLRFVPLPPPCPPNRRDDRPRGSPESYRDVGVSGGKIKFVEIDGYEDDGPPSGGWTVTTWTLKDPEGS 86 (131)
T ss_pred CEEEEECCCCCccEEEEeCCCccccCcccccccCCchhCceEEecCCCEEEEEEecccCCCcccCCcEEEEEEeccCCCC
Confidence 6889999765 6778888876431 233467789999999987221111 24668999999883
Q ss_pred CC-eeEEEEeecCCc
Q 045675 292 KG-WTRTFNTAFERI 305 (382)
Q Consensus 292 ~~-W~~~~~i~~~~~ 305 (382)
.. |.+.++++...+
T Consensus 87 ~~~W~~d~~v~~~di 101 (131)
T PF07762_consen 87 SWEWKKDCEVDLSDI 101 (131)
T ss_pred CCCEEEeEEEEhhhc
Confidence 22 999999987665
No 43
>PF13964 Kelch_6: Kelch motif
Probab=94.60 E-value=0.08 Score=33.79 Aligned_cols=37 Identities=16% Similarity=0.240 Sum_probs=27.8
Q ss_pred eccCceEEEeeCCC----CceeEEEEcccccceeccCCCCC
Q 045675 105 GSCNGLLCLDVSSA----FGMAFVLWNPATNEFKGLPTPSL 141 (382)
Q Consensus 105 ~s~~Gll~~~~~~~----~~~~~~V~NP~T~~~~~LP~~~~ 141 (382)
.+.+|-|.+..+.. ....+.++||.|++|..+|+++.
T Consensus 8 v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~ 48 (50)
T PF13964_consen 8 VVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPT 48 (50)
T ss_pred EEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCC
Confidence 45566766655432 15689999999999999998875
No 44
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=94.56 E-value=1.1 Score=42.74 Aligned_cols=162 Identities=13% Similarity=0.153 Sum_probs=82.1
Q ss_pred ceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEECCCC--CeeeecCC
Q 045675 120 GMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYSTSTG--KWKEVAAG 197 (382)
Q Consensus 120 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vyss~t~--~W~~~~~~ 197 (382)
.+.+.|+|-+|+||.. |...-.... -+.++||-..+.+..|++.+-.-. ...=+.|.+... .|+++...
T Consensus 56 iDELHvYNTatnqWf~-PavrGDiPp------gcAA~GfvcdGtrilvFGGMvEYG--kYsNdLYELQasRWeWkrlkp~ 126 (830)
T KOG4152|consen 56 IDELHVYNTATNQWFA-PAVRGDIPP------GCAAFGFVCDGTRILVFGGMVEYG--KYSNDLYELQASRWEWKRLKPK 126 (830)
T ss_pred hhhhhhhccccceeec-chhcCCCCC------chhhcceEecCceEEEEccEeeec--cccchHHHhhhhhhhHhhcCCC
Confidence 5678999999999985 221111100 122444444444444444443211 223345555544 56665433
Q ss_pred -----CCeeEEeCCcceEEECceEEEEeeccccc--------c--cccEEEEEECCCce--eeEe----CCCCCCCCCee
Q 045675 198 -----TGSCVIYGGQDAVAVKGVLHWIANGIGVL--------V--NEKFVVSYDMNLEL--FWRT----AMPELPTDCYV 256 (382)
Q Consensus 198 -----~~~~~~~~~~~~v~~~G~lywl~~~~~~~--------~--~~~~i~~fD~~~~~--~~~i----~~P~~~~~~~~ 256 (382)
+++++.++ +.-...+.++|.+++-..++ . .+.+|+-+-..+.. |... .+|..+. ++.
T Consensus 127 ~p~nG~pPCPRlG-HSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRE-SHT 204 (830)
T KOG4152|consen 127 TPKNGPPPCPRLG-HSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRE-SHT 204 (830)
T ss_pred CCCCCCCCCCccC-ceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCCCCCcc-cce
Confidence 34666644 46667778999988765443 1 22344444444432 3321 3444432 222
Q ss_pred eE--EEeCC---eEEEEEecCCCccCCCCCeEEEEEECCCCC-eeEEE
Q 045675 257 KA--LSYDQ---SLALAVYPGLGFRSRLSNRFELWVMNEGKG-WTRTF 298 (382)
Q Consensus 257 ~l--~~~~g---~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~-W~~~~ 298 (382)
.+ .+.|. ++++++.. . .-.--++|.|+-+.- |.+-.
T Consensus 205 AViY~eKDs~~skmvvyGGM--~----G~RLgDLW~Ldl~Tl~W~kp~ 246 (830)
T KOG4152|consen 205 AVIYTEKDSKKSKMVVYGGM--S----GCRLGDLWTLDLDTLTWNKPS 246 (830)
T ss_pred eEEEEeccCCcceEEEEccc--c----cccccceeEEecceeeccccc
Confidence 22 23333 45555554 2 234458999987522 88753
No 45
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=94.35 E-value=0.99 Score=39.62 Aligned_cols=163 Identities=15% Similarity=0.136 Sum_probs=96.8
Q ss_pred EEEEEECCCCCeeeecCC-CCeeEEeCCcceEEECceEEEEeecccccccccEEEEEECCC----ceeeEeC--CCCCCC
Q 045675 180 IAEVYSTSTGKWKEVAAG-TGSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNL----ELFWRTA--MPELPT 252 (382)
Q Consensus 180 ~~~vyss~t~~W~~~~~~-~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~----~~~~~i~--~P~~~~ 252 (382)
...+|++.+++++..... ...+.. .++.-||.+.-.++... ....+-.|++.+ ..|.+.. |-..+
T Consensus 47 ~s~~yD~~tn~~rpl~v~td~FCSg----g~~L~dG~ll~tGG~~~---G~~~ir~~~p~~~~~~~~w~e~~~~m~~~R- 118 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLTVQTDTFCSG----GAFLPDGRLLQTGGDND---GNKAIRIFTPCTSDGTCDWTESPNDMQSGR- 118 (243)
T ss_pred EEEEEecCCCcEEeccCCCCCcccC----cCCCCCCCEEEeCCCCc---cccceEEEecCCCCCCCCceECcccccCCC-
Confidence 466788888888876654 222221 44556787776665542 235677788765 5566542 22222
Q ss_pred CCeeeEEEe-CCeEEEEEecCCCccCCCCCeEEEEEECCC-CC---eeEEEEee---cCCcccceEEeeCCcEEEEEcCe
Q 045675 253 DCYVKALSY-DQSLALAVYPGLGFRSRLSNRFELWVMNEG-KG---WTRTFNTA---FERIAWPVGSFRDSKIIMKSVDQ 324 (382)
Q Consensus 253 ~~~~~l~~~-~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~-~~---W~~~~~i~---~~~~~~~~~~~~~g~l~l~~~~~ 324 (382)
+......+ ||++.++++. . ....+.|=-... .+ |....... ...++--+.+..+|+||+....+
T Consensus 119 -WYpT~~~L~DG~vlIvGG~--~-----~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~ 190 (243)
T PF07250_consen 119 -WYPTATTLPDGRVLIVGGS--N-----NPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG 190 (243)
T ss_pred -ccccceECCCCCEEEEeCc--C-----CCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC
Confidence 44444544 8999999987 2 555666544221 12 32222111 11235556677899999999988
Q ss_pred EEEEeCCCCcE-EEEe-eeCCCCCeEEEEEEeeceeecCC
Q 045675 325 FFLFNPKTKRN-FILP-IDSGMGYSYKVFTYVDSIVAVNG 362 (382)
Q Consensus 325 ~~~yd~~t~~~-~~v~-~~~~~~~~~~~~~y~~SLv~~~~ 362 (382)
-.+||.+++++ +.+. ++++ .+.++...|-|-++-
T Consensus 191 s~i~d~~~n~v~~~lP~lPg~----~R~YP~sgssvmLPl 226 (243)
T PF07250_consen 191 SIIYDYKTNTVVRTLPDLPGG----PRNYPASGSSVMLPL 226 (243)
T ss_pred cEEEeCCCCeEEeeCCCCCCC----ceecCCCcceEEecC
Confidence 88899999976 5554 4332 456777776554443
No 46
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=94.32 E-value=1.7 Score=40.99 Aligned_cols=141 Identities=13% Similarity=0.132 Sum_probs=81.2
Q ss_pred CCEEEEEECCCCCeeeecCC-CCeeEEeCCcceEEECce-EEEEeecccccccccEEEEEECCCceeeEeCCCCCCCCC-
Q 045675 178 DAIAEVYSTSTGKWKEVAAG-TGSCVIYGGQDAVAVKGV-LHWIANGIGVLVNEKFVVSYDMNLELFWRTAMPELPTDC- 254 (382)
Q Consensus 178 ~~~~~vyss~t~~W~~~~~~-~~~~~~~~~~~~v~~~G~-lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~- 254 (382)
+..+.+|......=..+.++ ...++. . ....+-+|. .-+.+++. .++.+||+.+.+...+..|......
T Consensus 234 d~~lrifqvDGk~N~~lqS~~l~~fPi-~-~a~f~p~G~~~i~~s~rr------ky~ysyDle~ak~~k~~~~~g~e~~~ 305 (514)
T KOG2055|consen 234 DGTLRIFQVDGKVNPKLQSIHLEKFPI-Q-KAEFAPNGHSVIFTSGRR------KYLYSYDLETAKVTKLKPPYGVEEKS 305 (514)
T ss_pred CCcEEEEEecCccChhheeeeeccCcc-c-eeeecCCCceEEEecccc------eEEEEeeccccccccccCCCCcccch
Confidence 34788887765443344444 333333 2 144455776 55554443 6999999999999999888776532
Q ss_pred --eeeEEEeCCeEEEEEecCCCccCCCCCeEEEEEECCCCCeeEEEEeecCCcccceEEeeCCcEEEEE-cC-eEEEEeC
Q 045675 255 --YVKALSYDQSLALAVYPGLGFRSRLSNRFELWVMNEGKGWTRTFNTAFERIAWPVGSFRDSKIIMKS-VD-QFFLFNP 330 (382)
Q Consensus 255 --~~~l~~~~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~W~~~~~i~~~~~~~~~~~~~~g~l~l~~-~~-~~~~yd~ 330 (382)
.+.+.- ++...++.+. ...|.+-..+.. .|...+.| .....-+.+..+|+.++.. .+ .|+++|+
T Consensus 306 ~e~FeVSh-d~~fia~~G~--------~G~I~lLhakT~-eli~s~Ki--eG~v~~~~fsSdsk~l~~~~~~GeV~v~nl 373 (514)
T KOG2055|consen 306 MERFEVSH-DSNFIAIAGN--------NGHIHLLHAKTK-ELITSFKI--EGVVSDFTFSSDSKELLASGGTGEVYVWNL 373 (514)
T ss_pred hheeEecC-CCCeEEEccc--------CceEEeehhhhh-hhhheeee--ccEEeeEEEecCCcEEEEEcCCceEEEEec
Confidence 222222 3443333332 334444333333 25544444 3445556666677754444 44 9999999
Q ss_pred CCCcEEEE
Q 045675 331 KTKRNFIL 338 (382)
Q Consensus 331 ~t~~~~~v 338 (382)
+.+.....
T Consensus 374 ~~~~~~~r 381 (514)
T KOG2055|consen 374 RQNSCLHR 381 (514)
T ss_pred CCcceEEE
Confidence 99965544
No 47
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=94.30 E-value=5.2 Score=38.28 Aligned_cols=144 Identities=13% Similarity=0.124 Sum_probs=81.7
Q ss_pred CEEEEEECCCC-----CeeeecCC-CCeeEEeCCcceEEECceEEEEeecccccccccEEEEEECCCce---eeEeCCCC
Q 045675 179 AIAEVYSTSTG-----KWKEVAAG-TGSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLEL---FWRTAMPE 249 (382)
Q Consensus 179 ~~~~vyss~t~-----~W~~~~~~-~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~---~~~i~~P~ 249 (382)
..+.+.+...+ .|+.+... ..... ..-+.++.+|.++..+. ....|++.|+.+.. |..+-.|.
T Consensus 252 s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~-----~v~~~~~~~yi~Tn~~a---~~~~l~~~~l~~~~~~~~~~~l~~~ 323 (414)
T PF02897_consen 252 SEVYLLDLDDGGSPDAKPKLLSPREDGVEY-----YVDHHGDRLYILTNDDA---PNGRLVAVDLADPSPAEWWTVLIPE 323 (414)
T ss_dssp EEEEEEECCCTTTSS-SEEEEEESSSS-EE-----EEEEETTEEEEEE-TT----TT-EEEEEETTSTSGGGEEEEEE--
T ss_pred CeEEEEeccccCCCcCCcEEEeCCCCceEE-----EEEccCCEEEEeeCCCC---CCcEEEEecccccccccceeEEcCC
Confidence 45555565553 56665443 22111 23345888998887542 24699999998765 66443333
Q ss_pred CCCCCeeeEEEeCCeEEEEEecCCCccCCCCCeEEEEEECCCCCeeEEEEeecCCcccceEEe--e-CCcEEEEEcC---
Q 045675 250 LPTDCYVKALSYDQSLALAVYPGLGFRSRLSNRFELWVMNEGKGWTRTFNTAFERIAWPVGSF--R-DSKIIMKSVD--- 323 (382)
Q Consensus 250 ~~~~~~~~l~~~~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~W~~~~~i~~~~~~~~~~~~--~-~g~l~l~~~~--- 323 (382)
........+...++.|.+.... . ....+.++.++. +|.. ..+++.......++. . ..++++...+
T Consensus 324 ~~~~~l~~~~~~~~~Lvl~~~~--~----~~~~l~v~~~~~--~~~~-~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~ 394 (414)
T PF02897_consen 324 DEDVSLEDVSLFKDYLVLSYRE--N----GSSRLRVYDLDD--GKES-REIPLPEAGSVSGVSGDFDSDELRFSYSSFTT 394 (414)
T ss_dssp SSSEEEEEEEEETTEEEEEEEE--T----TEEEEEEEETT---TEEE-EEEESSSSSEEEEEES-TT-SEEEEEEEETTE
T ss_pred CCceeEEEEEEECCEEEEEEEE--C----CccEEEEEECCC--CcEE-eeecCCcceEEeccCCCCCCCEEEEEEeCCCC
Confidence 2211233445568888887776 3 466777777772 3443 345444433223332 2 2346666654
Q ss_pred --eEEEEeCCCCcEEEEe
Q 045675 324 --QFFLFNPKTKRNFILP 339 (382)
Q Consensus 324 --~~~~yd~~t~~~~~v~ 339 (382)
.++.||+++++.+.+.
T Consensus 395 P~~~y~~d~~t~~~~~~k 412 (414)
T PF02897_consen 395 PPTVYRYDLATGELTLLK 412 (414)
T ss_dssp EEEEEEEETTTTCEEEEE
T ss_pred CCEEEEEECCCCCEEEEE
Confidence 8999999999988764
No 48
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=94.30 E-value=0.097 Score=33.18 Aligned_cols=39 Identities=10% Similarity=0.051 Sum_probs=24.9
Q ss_pred cceEEE-CceEEEEeecccccccccEEEEEECCCceeeEe
Q 045675 207 QDAVAV-KGVLHWIANGIGVLVNEKFVVSYDMNLELFWRT 245 (382)
Q Consensus 207 ~~~v~~-~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i 245 (382)
+.++.+ ++.+|..++.........-+..||+.+++|+.+
T Consensus 5 h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~ 44 (49)
T PF13418_consen 5 HSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRL 44 (49)
T ss_dssp -EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE-
T ss_pred EEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEEC
Confidence 466767 589999988765423445788999999999998
No 49
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=93.86 E-value=4 Score=35.36 Aligned_cols=188 Identities=11% Similarity=0.069 Sum_probs=93.0
Q ss_pred cCceEEEeeCCCCceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEEC
Q 045675 107 CNGLLCLDVSSAFGMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYST 186 (382)
Q Consensus 107 ~~Gll~~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vyss 186 (382)
-+|.|++... ...++.+|+.|++.+.--..+..... . +...+=+|+.... ...+..++.
T Consensus 35 ~~~~v~~~~~---~~~l~~~d~~tG~~~W~~~~~~~~~~--~-----------~~~~~~~v~v~~~-----~~~l~~~d~ 93 (238)
T PF13360_consen 35 DGGRVYVASG---DGNLYALDAKTGKVLWRFDLPGPISG--A-----------PVVDGGRVYVGTS-----DGSLYALDA 93 (238)
T ss_dssp ETTEEEEEET---TSEEEEEETTTSEEEEEEECSSCGGS--G-----------EEEETTEEEEEET-----TSEEEEEET
T ss_pred eCCEEEEEcC---CCEEEEEECCCCCEEEEeeccccccc--e-----------eeecccccccccc-----eeeeEeccc
Confidence 5788877755 56899999999985542222211100 0 0001112222211 126777776
Q ss_pred CCC--Cee-eecCCCCeeEEeCCcceEEECceEEEEeecccccccccEEEEEECCCcee--eE-eCCCCCCC------CC
Q 045675 187 STG--KWK-EVAAGTGSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELF--WR-TAMPELPT------DC 254 (382)
Q Consensus 187 ~t~--~W~-~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~--~~-i~~P~~~~------~~ 254 (382)
.++ .|+ .....+..... ........++.+|.....+ .|.++|+.+.+- .. +..|.... +.
T Consensus 94 ~tG~~~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g-------~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~ 165 (238)
T PF13360_consen 94 KTGKVLWSIYLTSSPPAGVR-SSSSPAVDGDRLYVGTSSG-------KLVALDPKTGKLLWKYPVGEPRGSSPISSFSDI 165 (238)
T ss_dssp TTSCEEEEEEE-SSCTCSTB---SEEEEETTEEEEEETCS-------EEEEEETTTTEEEEEEESSTT-SS--EEEETTE
T ss_pred CCcceeeeeccccccccccc-cccCceEecCEEEEEeccC-------cEEEEecCCCcEEEEeecCCCCCCcceeeeccc
Confidence 666 798 44332211111 1123334466676665444 899999987544 33 23333211 01
Q ss_pred eeeEEEeCCeEEEEEecCCCccCCCCCeEEEEEECCCCC-eeEEEEeecCCcccceEEeeCCcEEEEEcC-eEEEEeCCC
Q 045675 255 YVKALSYDQSLALAVYPGLGFRSRLSNRFELWVMNEGKG-WTRTFNTAFERIAWPVGSFRDSKIIMKSVD-QFFLFNPKT 332 (382)
Q Consensus 255 ~~~l~~~~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~-W~~~~~i~~~~~~~~~~~~~~g~l~l~~~~-~~~~yd~~t 332 (382)
...+...+|.+++.... ...+.+ .+...+. |+.. + .. ........++.|++...+ .++++|++|
T Consensus 166 ~~~~~~~~~~v~~~~~~--------g~~~~~-d~~tg~~~w~~~--~--~~-~~~~~~~~~~~l~~~~~~~~l~~~d~~t 231 (238)
T PF13360_consen 166 NGSPVISDGRVYVSSGD--------GRVVAV-DLATGEKLWSKP--I--SG-IYSLPSVDGGTLYVTSSDGRLYALDLKT 231 (238)
T ss_dssp EEEEECCTTEEEEECCT--------SSEEEE-ETTTTEEEEEEC--S--S--ECECEECCCTEEEEEETTTEEEEEETTT
T ss_pred ccceEEECCEEEEEcCC--------CeEEEE-ECCCCCEEEEec--C--CC-ccCCceeeCCEEEEEeCCCEEEEEECCC
Confidence 23344456766665544 223443 4444421 6322 2 12 111123334446666644 999999999
Q ss_pred CcEEE
Q 045675 333 KRNFI 337 (382)
Q Consensus 333 ~~~~~ 337 (382)
++..+
T Consensus 232 G~~~W 236 (238)
T PF13360_consen 232 GKVVW 236 (238)
T ss_dssp TEEEE
T ss_pred CCEEe
Confidence 98654
No 50
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=93.73 E-value=1.1 Score=41.11 Aligned_cols=122 Identities=15% Similarity=0.101 Sum_probs=73.5
Q ss_pred ceEEE--CceEEEEeecccccccccEEEEEECCCceeeEe---CCCCCC---CC---CeeeEEE---eCCeEEEEEecCC
Q 045675 208 DAVAV--KGVLHWIANGIGVLVNEKFVVSYDMNLELFWRT---AMPELP---TD---CYVKALS---YDQSLALAVYPGL 273 (382)
Q Consensus 208 ~~v~~--~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i---~~P~~~---~~---~~~~l~~---~~g~L~~~~~~~~ 273 (382)
.+++. +|.+||++..+ .|...|++.+.-... .+-... .+ .-..+.. -.|+|++..+.+
T Consensus 188 ~~~~~~~~~~~~F~Sy~G-------~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g- 259 (342)
T PF06433_consen 188 HPAYSRDGGRLYFVSYEG-------NVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQG- 259 (342)
T ss_dssp --EEETTTTEEEEEBTTS-------EEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--
T ss_pred ccceECCCCeEEEEecCC-------EEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCC-
Confidence 44444 36799988776 899999988765443 111111 01 1122222 367899877653
Q ss_pred CccCCCCCeEEEEEECCCCCeeEEEEeecCCcccceEEeeCCc-EEEEE-c-C-eEEEEeCCCCcEEEE
Q 045675 274 GFRSRLSNRFELWVMNEGKGWTRTFNTAFERIAWPVGSFRDSK-IIMKS-V-D-QFFLFNPKTKRNFIL 338 (382)
Q Consensus 274 ~~~~~~~~~~~iW~l~~~~~W~~~~~i~~~~~~~~~~~~~~g~-l~l~~-~-~-~~~~yd~~t~~~~~v 338 (382)
..+++....=+||+++-..+ .++.+|+++.-...+.+..+.+ +++.. . + .+++||..|++..+.
T Consensus 260 ~~gsHKdpgteVWv~D~~t~-krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~ 327 (342)
T PF06433_consen 260 GEGSHKDPGTEVWVYDLKTH-KRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRS 327 (342)
T ss_dssp -TT-TTS-EEEEEEEETTTT-EEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEE
T ss_pred CCCCccCCceEEEEEECCCC-eEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEee
Confidence 33456778899999987645 6778888765556788887766 55543 3 3 799999999975543
No 51
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=93.22 E-value=8 Score=36.89 Aligned_cols=97 Identities=15% Similarity=0.144 Sum_probs=54.8
Q ss_pred cEEEEEECCCceeeEeCCCCCCCCCeeeEEEe-CCeEEEEEecCCCccCCCCCeEEEEEECCCCCeeEEEEeecCCcccc
Q 045675 230 KFVVSYDMNLELFWRTAMPELPTDCYVKALSY-DQSLALAVYPGLGFRSRLSNRFELWVMNEGKGWTRTFNTAFERIAWP 308 (382)
Q Consensus 230 ~~i~~fD~~~~~~~~i~~P~~~~~~~~~l~~~-~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~W~~~~~i~~~~~~~~ 308 (382)
..+..||..+.+-..+.-+... ...+.+. +|+-.++. ...+++|+.+-..|=.++..-+-..+..-
T Consensus 382 D~l~iyd~~~~e~kr~e~~lg~---I~av~vs~dGK~~vva----------Ndr~el~vididngnv~~idkS~~~lItd 448 (668)
T COG4946 382 DKLGIYDKDGGEVKRIEKDLGN---IEAVKVSPDGKKVVVA----------NDRFELWVIDIDNGNVRLIDKSEYGLITD 448 (668)
T ss_pred ceEEEEecCCceEEEeeCCccc---eEEEEEcCCCcEEEEE----------cCceEEEEEEecCCCeeEecccccceeEE
Confidence 4899999999998888766542 3344443 66644433 34678999875434111111111223444
Q ss_pred eEEeeCCc-EEEEEcC-----eEEEEeCCCCcEEEEe
Q 045675 309 VGSFRDSK-IIMKSVD-----QFFLFNPKTKRNFILP 339 (382)
Q Consensus 309 ~~~~~~g~-l~l~~~~-----~~~~yd~~t~~~~~v~ 339 (382)
+..+++++ +-..... .+-.||+.+++.-.+.
T Consensus 449 f~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vT 485 (668)
T COG4946 449 FDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVT 485 (668)
T ss_pred EEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEec
Confidence 44555555 3233322 5677777777766663
No 52
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=92.96 E-value=7.8 Score=36.09 Aligned_cols=166 Identities=14% Similarity=0.054 Sum_probs=89.5
Q ss_pred EEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEECCCCC--eeeecCC---CCeeEEeCCcceEEECc-eEEEEeecccc
Q 045675 152 VSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYSTSTGK--WKEVAAG---TGSCVIYGGQDAVAVKG-VLHWIANGIGV 225 (382)
Q Consensus 152 ~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vyss~t~~--W~~~~~~---~~~~~~~~~~~~v~~~G-~lywl~~~~~~ 225 (382)
..+.+.++|..+...|.-+ ....+.+|+...+. ....... ....+. +-...-+| .+|.+....
T Consensus 145 h~H~v~~~pdg~~v~v~dl------G~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPR---h~~f~pdg~~~Yv~~e~s-- 213 (345)
T PF10282_consen 145 HPHQVVFSPDGRFVYVPDL------GADRVYVYDIDDDTGKLTPVDSIKVPPGSGPR---HLAFSPDGKYAYVVNELS-- 213 (345)
T ss_dssp CEEEEEE-TTSSEEEEEET------TTTEEEEEEE-TTS-TEEEEEEEECSTTSSEE---EEEE-TTSSEEEEEETTT--
T ss_pred cceeEEECCCCCEEEEEec------CCCEEEEEEEeCCCceEEEeeccccccCCCCc---EEEEcCCcCEEEEecCCC--
Confidence 3456777886544433322 22478888887665 5432211 222222 22333366 466655443
Q ss_pred cccccEEEEEECC--CceeeEe----CCCCCCCC--CeeeEEEe-CCeEEEEEecCCCccCCCCCeEEEEEECCCCC-ee
Q 045675 226 LVNEKFVVSYDMN--LELFWRT----AMPELPTD--CYVKALSY-DQSLALAVYPGLGFRSRLSNRFELWVMNEGKG-WT 295 (382)
Q Consensus 226 ~~~~~~i~~fD~~--~~~~~~i----~~P~~~~~--~~~~l~~~-~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~-W~ 295 (382)
..|.+|+.. +..++.+ .+|..... ....+... +|+..++... ....+.++.++...| -.
T Consensus 214 ----~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr-------~~~sI~vf~~d~~~g~l~ 282 (345)
T PF10282_consen 214 ----NTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNR-------GSNSISVFDLDPATGTLT 282 (345)
T ss_dssp ----TEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEEC-------TTTEEEEEEECTTTTTEE
T ss_pred ----CcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEec-------cCCEEEEEEEecCCCceE
Confidence 356666665 6666654 34543322 23444443 6765444443 388999999976545 56
Q ss_pred EEEEeecCC-cccceEEeeCCc-EEEEEcC--eEE--EEeCCCCcEEEEe
Q 045675 296 RTFNTAFER-IAWPVGSFRDSK-IIMKSVD--QFF--LFNPKTKRNFILP 339 (382)
Q Consensus 296 ~~~~i~~~~-~~~~~~~~~~g~-l~l~~~~--~~~--~yd~~t~~~~~v~ 339 (382)
.+..++... .-+-+.+..+|+ |++...+ .+. ..|.++++++.+.
T Consensus 283 ~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 283 LVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp EEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred EEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEec
Confidence 566666533 244566667888 4555544 444 4577899988875
No 53
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=92.94 E-value=11 Score=37.55 Aligned_cols=45 Identities=18% Similarity=0.254 Sum_probs=40.3
Q ss_pred CCCCCCCHHHHHHHHhcCChhhhhhhhccchhhHhhcCCHHHHHH
Q 045675 7 TTVSSVPLVIITDILLQLPIKSIVRFKCVSKSWLLLIKSSEFVTA 51 (382)
Q Consensus 7 ~~~~~LP~dll~~IL~rLp~~sl~r~r~VcK~W~~li~sp~F~~~ 51 (382)
.-+..||.++...||..|+.+++.++++||+.|+.++.+......
T Consensus 106 dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~ 150 (537)
T KOG0274|consen 106 DFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWR 150 (537)
T ss_pred chhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhh
Confidence 456789999999999999999999999999999999987776553
No 54
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=92.94 E-value=7.3 Score=35.66 Aligned_cols=116 Identities=11% Similarity=0.065 Sum_probs=77.7
Q ss_pred CceEEEEeecccccccccEEEEEECCCceeeEe---CCCCCCCCCeeeEEEeCCeEEEEEecCCCccCCCCCeEEEEEEC
Q 045675 213 KGVLHWIANGIGVLVNEKFVVSYDMNLELFWRT---AMPELPTDCYVKALSYDQSLALAVYPGLGFRSRLSNRFELWVMN 289 (382)
Q Consensus 213 ~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i---~~P~~~~~~~~~l~~~~g~L~~~~~~~~~~~~~~~~~~~iW~l~ 289 (382)
+|..-|...-+ ...|..||+........ .+++.. +.+.-+..-+|+++.+... . ..++.+|..+
T Consensus 155 ~~~~l~v~DLG-----~Dri~~y~~~dg~L~~~~~~~v~~G~-GPRHi~FHpn~k~aY~v~E--L-----~stV~v~~y~ 221 (346)
T COG2706 155 DGRYLVVPDLG-----TDRIFLYDLDDGKLTPADPAEVKPGA-GPRHIVFHPNGKYAYLVNE--L-----NSTVDVLEYN 221 (346)
T ss_pred CCCEEEEeecC-----CceEEEEEcccCccccccccccCCCC-CcceEEEcCCCcEEEEEec--c-----CCEEEEEEEc
Confidence 56666766665 46888888886655543 333332 2445556778998888887 3 8899999999
Q ss_pred CCCC-eeEEEEeec-C-Cc-----ccceEEeeCCcEEEEEcC-----eEEEEeCCCCcEEEEeee
Q 045675 290 EGKG-WTRTFNTAF-E-RI-----AWPVGSFRDSKIIMKSVD-----QFFLFNPKTKRNFILPID 341 (382)
Q Consensus 290 ~~~~-W~~~~~i~~-~-~~-----~~~~~~~~~g~l~l~~~~-----~~~~yd~~t~~~~~v~~~ 341 (382)
...+ -+.+.+|+. + .+ ..-+.+..+|..+.+++. .++..|..+++++-+..-
T Consensus 222 ~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~ 286 (346)
T COG2706 222 PAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGIT 286 (346)
T ss_pred CCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEe
Confidence 8634 666666632 1 12 556777788985555543 677779999998888654
No 55
>smart00612 Kelch Kelch domain.
Probab=92.80 E-value=0.21 Score=30.91 Aligned_cols=33 Identities=21% Similarity=0.374 Sum_probs=24.0
Q ss_pred CEEEEEECCCCCeeeecCCCCeeEEeCCcceEEECc
Q 045675 179 AIAEVYSTSTGKWKEVAAGTGSCVIYGGQDAVAVKG 214 (382)
Q Consensus 179 ~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~v~~~G 214 (382)
..+++|++.+++|+..+.++..+.. +.++.++|
T Consensus 15 ~~v~~yd~~~~~W~~~~~~~~~r~~---~~~~~~~g 47 (47)
T smart00612 15 KSVEVYDPETNKWTPLPSMPTPRSG---HGVAVING 47 (47)
T ss_pred eeEEEECCCCCeEccCCCCCCcccc---ceEEEeCC
Confidence 4899999999999998877554433 35555554
No 56
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=92.12 E-value=7.3 Score=33.68 Aligned_cols=134 Identities=11% Similarity=0.135 Sum_probs=74.9
Q ss_pred EEEEEECCCC--CeeeecCCCCeeEEeCCcceEEECceEEEEeecccccccccEEEEEECCCceee-EeCCCCCCCCCee
Q 045675 180 IAEVYSTSTG--KWKEVAAGTGSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFW-RTAMPELPTDCYV 256 (382)
Q Consensus 180 ~~~vyss~t~--~W~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~-~i~~P~~~~~~~~ 256 (382)
.+..++..++ .|+..-........ ..++.-+|.+|.....+ .|.++|..+.+-. ...++... ..
T Consensus 4 ~l~~~d~~tG~~~W~~~~~~~~~~~~---~~~~~~~~~v~~~~~~~-------~l~~~d~~tG~~~W~~~~~~~~---~~ 70 (238)
T PF13360_consen 4 TLSALDPRTGKELWSYDLGPGIGGPV---ATAVPDGGRVYVASGDG-------NLYALDAKTGKVLWRFDLPGPI---SG 70 (238)
T ss_dssp EEEEEETTTTEEEEEEECSSSCSSEE---ETEEEETTEEEEEETTS-------EEEEEETTTSEEEEEEECSSCG---GS
T ss_pred EEEEEECCCCCEEEEEECCCCCCCcc---ceEEEeCCEEEEEcCCC-------EEEEEECCCCCEEEEeeccccc---cc
Confidence 5677887766 68874321111111 12455788888875444 8999998665432 22444432 12
Q ss_pred eEEEeCCeEEEEEecCCCccCCCCCeEEEEEECCCCC---eeE-EEEeecCCcccc-eEEeeCCcEEEEEcC-eEEEEeC
Q 045675 257 KALSYDQSLALAVYPGLGFRSRLSNRFELWVMNEGKG---WTR-TFNTAFERIAWP-VGSFRDSKIIMKSVD-QFFLFNP 330 (382)
Q Consensus 257 ~l~~~~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~---W~~-~~~i~~~~~~~~-~~~~~~g~l~l~~~~-~~~~yd~ 330 (382)
.....++.+++.... . .++.++...| |.. ...-+......+ .....++.+++...+ .++.+|+
T Consensus 71 ~~~~~~~~v~v~~~~--------~---~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~ 139 (238)
T PF13360_consen 71 APVVDGGRVYVGTSD--------G---SLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDP 139 (238)
T ss_dssp GEEEETTEEEEEETT--------S---EEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEET
T ss_pred eeeecccccccccce--------e---eeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEec
Confidence 247778888777643 2 5666653324 984 433222222222 222234446666644 9999999
Q ss_pred CCCcEEE
Q 045675 331 KTKRNFI 337 (382)
Q Consensus 331 ~t~~~~~ 337 (382)
++++...
T Consensus 140 ~tG~~~w 146 (238)
T PF13360_consen 140 KTGKLLW 146 (238)
T ss_dssp TTTEEEE
T ss_pred CCCcEEE
Confidence 9998644
No 57
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=92.09 E-value=4.5 Score=35.13 Aligned_cols=137 Identities=9% Similarity=0.127 Sum_probs=76.6
Q ss_pred EECceEEEEeecccccccccEEEEEECCCceeeEeCCCCCC---CCC-eeeEEEe--CC--eEEEEEecCCCccCCCCCe
Q 045675 211 AVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRTAMPELP---TDC-YVKALSY--DQ--SLALAVYPGLGFRSRLSNR 282 (382)
Q Consensus 211 ~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~---~~~-~~~l~~~--~g--~L~~~~~~~~~~~~~~~~~ 282 (382)
.+||-+ ++... ..+...|+.|+++..++.|... ... ...++-. .+ ++..+... . +......
T Consensus 3 sCnGLl-c~~~~-------~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~--~-~~~~~~~ 71 (230)
T TIGR01640 3 PCDGLI-CFSYG-------KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDR--S-GNRNQSE 71 (230)
T ss_pred ccceEE-EEecC-------CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEee--c-CCCCCcc
Confidence 468888 44433 2799999999999999766532 111 1223211 12 22222211 0 0112467
Q ss_pred EEEEEECCCCCeeEEEEeecCCc-ccceEEeeCCcEEEEEcC-------eEEEEeCCCCcEEE-EeeeCCCC---CeEEE
Q 045675 283 FELWVMNEGKGWTRTFNTAFERI-AWPVGSFRDSKIIMKSVD-------QFFLFNPKTKRNFI-LPIDSGMG---YSYKV 350 (382)
Q Consensus 283 ~~iW~l~~~~~W~~~~~i~~~~~-~~~~~~~~~g~l~l~~~~-------~~~~yd~~t~~~~~-v~~~~~~~---~~~~~ 350 (382)
++|+.++.+ .|......+.... ... ++.-+|.|+..... .++.||+++.+++. +..+.... .....
T Consensus 72 ~~Vys~~~~-~Wr~~~~~~~~~~~~~~-~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~~L 149 (230)
T TIGR01640 72 HQVYTLGSN-SWRTIECSPPHHPLKSR-GVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLSL 149 (230)
T ss_pred EEEEEeCCC-CccccccCCCCccccCC-eEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCccccccccceEE
Confidence 889999876 6998763221111 222 55557877655431 59999999999995 66543221 12345
Q ss_pred EEEeeceeec
Q 045675 351 FTYVDSIVAV 360 (382)
Q Consensus 351 ~~y~~SLv~~ 360 (382)
..+...|.-+
T Consensus 150 ~~~~G~L~~v 159 (230)
T TIGR01640 150 INYKGKLAVL 159 (230)
T ss_pred EEECCEEEEE
Confidence 5555555443
No 58
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=92.03 E-value=8.5 Score=35.87 Aligned_cols=147 Identities=10% Similarity=0.011 Sum_probs=81.7
Q ss_pred eeeccCceEEEeeCCCCceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCC----
Q 045675 103 IVGSCNGLLCLDVSSAFGMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYD---- 178 (382)
Q Consensus 103 ~~~s~~Gll~~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~---- 178 (382)
.++..+.-|+..+. .....|+|+.|+....+|.+...... . ..+.+ .+. +..+........
T Consensus 71 F~al~gskIv~~d~---~~~t~vyDt~t~av~~~P~l~~pk~~--p---isv~V-----G~~--LY~m~~~~~~~~~~~~ 135 (342)
T PF07893_consen 71 FFALHGSKIVAVDQ---SGRTLVYDTDTRAVATGPRLHSPKRC--P---ISVSV-----GDK--LYAMDRSPFPEPAGRP 135 (342)
T ss_pred EEEecCCeEEEEcC---CCCeEEEECCCCeEeccCCCCCCCcc--e---EEEEe-----CCe--EEEeeccCccccccCc
Confidence 33444555555555 34689999999999999987653221 1 11111 222 333322111110
Q ss_pred --CEEEEE--E--------CCCCCeeeecCCC-CeeE------EeCCcceEEECceEEEEeecccccccccEEEEEECCC
Q 045675 179 --AIAEVY--S--------TSTGKWKEVAAGT-GSCV------IYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNL 239 (382)
Q Consensus 179 --~~~~vy--s--------s~t~~W~~~~~~~-~~~~------~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~ 239 (382)
..+|++ . ..+.+|+..+.+| .... + . .-+|+ +|.--|++..+. ...-.+||..+
T Consensus 136 ~~~~FE~l~~~~~~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i-~-sYavv-~g~~I~vS~~~~----~~GTysfDt~~ 208 (342)
T PF07893_consen 136 DFPCFEALVYRPPPDDPSPEESWSWRSLPPPPFVRDRRYSDYRI-T-SYAVV-DGRTIFVSVNGR----RWGTYSFDTES 208 (342)
T ss_pred cceeEEEeccccccccccCCCcceEEcCCCCCccccCCcccceE-E-EEEEe-cCCeEEEEecCC----ceEEEEEEcCC
Confidence 155555 2 2234788876652 1110 2 1 24556 898888876651 13689999999
Q ss_pred ceeeEe---CCCCCCCC-----CeeeEE--EeC--CeEEEEEec
Q 045675 240 ELFWRT---AMPELPTD-----CYVKAL--SYD--QSLALAVYP 271 (382)
Q Consensus 240 ~~~~~i---~~P~~~~~-----~~~~l~--~~~--g~L~~~~~~ 271 (382)
.+|+.. .||..... ....++ ..+ +.||.+...
T Consensus 209 ~~W~~~GdW~LPF~G~a~y~~el~~W~Gls~~~~~~~lca~dv~ 252 (342)
T PF07893_consen 209 HEWRKHGDWMLPFHGQAEYVPELDLWFGLSSDGGGGHLCACDVS 252 (342)
T ss_pred cceeeccceecCcCCccEECCCcCeEEEeccCCCCcEEEEEecc
Confidence 999987 88876541 222333 333 477776665
No 59
>smart00612 Kelch Kelch domain.
Probab=91.99 E-value=0.5 Score=29.11 Aligned_cols=44 Identities=16% Similarity=0.007 Sum_probs=26.5
Q ss_pred EEEEeecccccccccEEEEEECCCceeeEe-CCCCCCCCCeeeEEEeC
Q 045675 216 LHWIANGIGVLVNEKFVVSYDMNLELFWRT-AMPELPTDCYVKALSYD 262 (382)
Q Consensus 216 lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P~~~~~~~~~l~~~~ 262 (382)
+|.+++... ......+..||+.+++|+.+ ++|..+ .....+.++
T Consensus 2 iyv~GG~~~-~~~~~~v~~yd~~~~~W~~~~~~~~~r--~~~~~~~~~ 46 (47)
T smart00612 2 IYVVGGFDG-GQRLKSVEVYDPETNKWTPLPSMPTPR--SGHGVAVIN 46 (47)
T ss_pred EEEEeCCCC-CceeeeEEEECCCCCeEccCCCCCCcc--ccceEEEeC
Confidence 455554332 11245789999999999987 555544 334444444
No 60
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=91.72 E-value=4 Score=36.21 Aligned_cols=123 Identities=13% Similarity=0.143 Sum_probs=71.7
Q ss_pred eeeccCceEEEeeCCCCceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEE
Q 045675 103 IVGSCNGLLCLDVSSAFGMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAE 182 (382)
Q Consensus 103 ~~~s~~Gll~~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~ 182 (382)
+++.-+|-|-...-. ...+...||.++.-..+|.+...... . . .+..|+-. -+.+... ....++
T Consensus 194 i~atpdGsvwyasla--gnaiaridp~~~~aev~p~P~~~~~g---s--R--riwsdpig----~~wittw---g~g~l~ 257 (353)
T COG4257 194 ICATPDGSVWYASLA--GNAIARIDPFAGHAEVVPQPNALKAG---S--R--RIWSDPIG----RAWITTW---GTGSLH 257 (353)
T ss_pred eEECCCCcEEEEecc--ccceEEcccccCCcceecCCCccccc---c--c--ccccCccC----cEEEecc---CCceee
Confidence 334445555443221 23456679999988888877763221 0 0 22323321 2222221 234788
Q ss_pred EEECCCCCeeeecCC-CCeeEEeCCcceEEEC-ceEEEEeecccccccccEEEEEECCCceeeEeCCCCCC
Q 045675 183 VYSTSTGKWKEVAAG-TGSCVIYGGQDAVAVK-GVLHWIANGIGVLVNEKFVVSYDMNLELFWRTAMPELP 251 (382)
Q Consensus 183 vyss~t~~W~~~~~~-~~~~~~~~~~~~v~~~-G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~ 251 (382)
-|++.+.+|.+-..+ .... ..+++++ --.-|+..-+ ...|..||+++++|+++++|...
T Consensus 258 rfdPs~~sW~eypLPgs~ar-----pys~rVD~~grVW~sea~-----agai~rfdpeta~ftv~p~pr~n 318 (353)
T COG4257 258 RFDPSVTSWIEYPLPGSKAR-----PYSMRVDRHGRVWLSEAD-----AGAIGRFDPETARFTVLPIPRPN 318 (353)
T ss_pred EeCcccccceeeeCCCCCCC-----cceeeeccCCcEEeeccc-----cCceeecCcccceEEEecCCCCC
Confidence 899999999876554 1111 1233343 2456775544 46999999999999999888754
No 61
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=91.61 E-value=7.7 Score=36.15 Aligned_cols=115 Identities=16% Similarity=0.146 Sum_probs=69.5
Q ss_pred CceEEEEeecccccccccEEEEEECCCce--eeE---eCCCCCCCCCeeeEEEeCCeEEEEEecCCCccCCCCCeEEEEE
Q 045675 213 KGVLHWIANGIGVLVNEKFVVSYDMNLEL--FWR---TAMPELPTDCYVKALSYDQSLALAVYPGLGFRSRLSNRFELWV 287 (382)
Q Consensus 213 ~G~lywl~~~~~~~~~~~~i~~fD~~~~~--~~~---i~~P~~~~~~~~~l~~~~g~L~~~~~~~~~~~~~~~~~~~iW~ 287 (382)
+|...|+...+ ...|..|++..+. ... +.+|.... .+.....-+|+..++... ....+.++.
T Consensus 154 dg~~v~v~dlG-----~D~v~~~~~~~~~~~l~~~~~~~~~~G~G-PRh~~f~pdg~~~Yv~~e-------~s~~v~v~~ 220 (345)
T PF10282_consen 154 DGRFVYVPDLG-----ADRVYVYDIDDDTGKLTPVDSIKVPPGSG-PRHLAFSPDGKYAYVVNE-------LSNTVSVFD 220 (345)
T ss_dssp TSSEEEEEETT-----TTEEEEEEE-TTS-TEEEEEEEECSTTSS-EEEEEE-TTSSEEEEEET-------TTTEEEEEE
T ss_pred CCCEEEEEecC-----CCEEEEEEEeCCCceEEEeeccccccCCC-CcEEEEcCCcCEEEEecC-------CCCcEEEEe
Confidence 57777777665 3578888887665 533 45665542 222223346665555554 388999999
Q ss_pred ECCCCC-eeEEEEeecC--Cc-----ccceEEeeCCc-EEEEEcC--eEEEEeC--CCCcEEEEee
Q 045675 288 MNEGKG-WTRTFNTAFE--RI-----AWPVGSFRDSK-IIMKSVD--QFFLFNP--KTKRNFILPI 340 (382)
Q Consensus 288 l~~~~~-W~~~~~i~~~--~~-----~~~~~~~~~g~-l~l~~~~--~~~~yd~--~t~~~~~v~~ 340 (382)
++...+ +....+++.- .. ..-+.+..+|+ ||+.... .+.+|++ ++++++.+..
T Consensus 221 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~ 286 (345)
T PF10282_consen 221 YDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQT 286 (345)
T ss_dssp EETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEE
T ss_pred ecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEE
Confidence 985435 7777777532 11 33456667888 5555544 7777776 6678888753
No 62
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=90.53 E-value=0.18 Score=47.05 Aligned_cols=39 Identities=21% Similarity=0.291 Sum_probs=35.0
Q ss_pred CCCCCCCHHHHHHHHhcCChhhhhhhhccchhhHhhcCC
Q 045675 7 TTVSSVPLVIITDILLQLPIKSIVRFKCVSKSWLLLIKS 45 (382)
Q Consensus 7 ~~~~~LP~dll~~IL~rLp~~sl~r~r~VcK~W~~li~s 45 (382)
...-.||.|++..||+-|..+++.|++.+|+.|+-+..+
T Consensus 70 ~~~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD 108 (483)
T KOG4341|consen 70 SISRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALD 108 (483)
T ss_pred cccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhc
Confidence 344579999999999999999999999999999998654
No 63
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=90.43 E-value=12 Score=33.17 Aligned_cols=135 Identities=13% Similarity=0.082 Sum_probs=78.9
Q ss_pred CCEEEEEECCCCCeeeecCCCCeeEEeCCcceEEECceEEEEeecccccccccEEEEEECCC-ceeeEeCCCCCCCCCee
Q 045675 178 DAIAEVYSTSTGKWKEVAAGTGSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNL-ELFWRTAMPELPTDCYV 256 (382)
Q Consensus 178 ~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~-~~~~~i~~P~~~~~~~~ 256 (382)
...+..|+..+++=......+... + + .....+++.+|-|+... .....||..+ +.-..++.|. .-.
T Consensus 67 ~S~l~~~d~~tg~~~~~~~l~~~~-F-g-EGit~~~d~l~qLTWk~------~~~f~yd~~tl~~~~~~~y~~----EGW 133 (264)
T PF05096_consen 67 QSSLRKVDLETGKVLQSVPLPPRY-F-G-EGITILGDKLYQLTWKE------GTGFVYDPNTLKKIGTFPYPG----EGW 133 (264)
T ss_dssp EEEEEEEETTTSSEEEEEE-TTT----E-EEEEEETTEEEEEESSS------SEEEEEETTTTEEEEEEE-SS----S--
T ss_pred cEEEEEEECCCCcEEEEEECCccc-c-c-eeEEEECCEEEEEEecC------CeEEEEccccceEEEEEecCC----cce
Confidence 358999999998754444443333 3 3 37778899999999987 5889999986 3334455553 345
Q ss_pred eEEEeCCeEEEEEecCCCccCCCCCeEEEEEECCCCCeeEEEEeecCCcccc------eEEeeCCcEEEEE--cCeEEEE
Q 045675 257 KALSYDQSLALAVYPGLGFRSRLSNRFELWVMNEGKGWTRTFNTAFERIAWP------VGSFRDSKIIMKS--VDQFFLF 328 (382)
Q Consensus 257 ~l~~~~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~W~~~~~i~~~~~~~~------~~~~~~g~l~l~~--~~~~~~y 328 (382)
.|+..+..|.+-.+. . .++.++.. ....+.+|....-..| +-.. +|.|+--. .+.++..
T Consensus 134 GLt~dg~~Li~SDGS---------~--~L~~~dP~-~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~I 200 (264)
T PF05096_consen 134 GLTSDGKRLIMSDGS---------S--RLYFLDPE-TFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRI 200 (264)
T ss_dssp EEEECSSCEEEE-SS---------S--EEEEE-TT-T-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEE
T ss_pred EEEcCCCEEEEECCc---------c--ceEEECCc-ccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEE
Confidence 666556666654443 3 44455533 3455655644322222 3333 67666333 3499999
Q ss_pred eCCCCcEEEE
Q 045675 329 NPKTKRNFIL 338 (382)
Q Consensus 329 d~~t~~~~~v 338 (382)
|++|+++...
T Consensus 201 dp~tG~V~~~ 210 (264)
T PF05096_consen 201 DPETGKVVGW 210 (264)
T ss_dssp ETTT-BEEEE
T ss_pred eCCCCeEEEE
Confidence 9999997764
No 64
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=89.67 E-value=1.4 Score=27.75 Aligned_cols=39 Identities=13% Similarity=0.008 Sum_probs=26.9
Q ss_pred CceEEEEeecc-cccccccEEEEEECCCceeeEe-CCCCCC
Q 045675 213 KGVLHWIANGI-GVLVNEKFVVSYDMNLELFWRT-AMPELP 251 (382)
Q Consensus 213 ~G~lywl~~~~-~~~~~~~~i~~fD~~~~~~~~i-~~P~~~ 251 (382)
++++|..++.. ........+.+||+.+.+|+.+ .+|..+
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~~R 41 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPPPR 41 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCCCc
Confidence 35666666655 2233456889999999999998 555544
No 65
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=89.33 E-value=0.32 Score=30.36 Aligned_cols=35 Identities=20% Similarity=0.298 Sum_probs=24.0
Q ss_pred CCeEEEEEEeecCCCCCEEEEEECCCCCeeeecCC
Q 045675 163 NDYVLVRIVNFQARYDAIAEVYSTSTGKWKEVAAG 197 (382)
Q Consensus 163 ~~ykvv~~~~~~~~~~~~~~vyss~t~~W~~~~~~ 197 (382)
+...|++...........+++|+..+++|+..+.+
T Consensus 12 ~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~m 46 (47)
T PF01344_consen 12 NKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPM 46 (47)
T ss_dssp TEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEE
T ss_pred CEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCC
Confidence 44555555442123446999999999999998765
No 66
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=89.22 E-value=12 Score=32.70 Aligned_cols=120 Identities=12% Similarity=0.139 Sum_probs=76.5
Q ss_pred cceEEECceEEEEeecccccccccEEEEEECCCcee-eEeCCCCCCCC----------CeeeEEEeCCeEEEEEecCCCc
Q 045675 207 QDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELF-WRTAMPELPTD----------CYVKALSYDQSLALAVYPGLGF 275 (382)
Q Consensus 207 ~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~-~~i~~P~~~~~----------~~~~l~~~~g~L~~~~~~~~~~ 275 (382)
...|+.+|.+|...... ..|+.||+.++.- ....+|..... ....+++.+..|.++-.. .+
T Consensus 71 Tg~VVynGs~yynk~~t------~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~avDE~GLWviYat--~~ 142 (249)
T KOG3545|consen 71 TGHVVYNGSLYYNKAGT------RNIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHSDIDLAVDENGLWVIYAT--PE 142 (249)
T ss_pred cceEEEcceEEeeccCC------cceEEEEeecceeeeeeeccccccCCCcccccCCCccccceecccceeEEecc--cc
Confidence 58899999999987543 5899999998543 33456644321 457788888889888886 31
Q ss_pred cCCCCCeEEEEEECCC----CC-eeEEEEeecCCcccceEEeeCCcEEEEEcC-----eE-EEEeCCCCcEEEEeee
Q 045675 276 RSRLSNRFELWVMNEG----KG-WTRTFNTAFERIAWPVGSFRDSKIIMKSVD-----QF-FLFNPKTKRNFILPID 341 (382)
Q Consensus 276 ~~~~~~~~~iW~l~~~----~~-W~~~~~i~~~~~~~~~~~~~~g~l~l~~~~-----~~-~~yd~~t~~~~~v~~~ 341 (382)
....+.|=.|+.. +. |.-.. +-.... -++.-+|.|+.+..- .+ ++||..+++-+.+.++
T Consensus 143 ---~~g~iv~skLdp~tl~~e~tW~T~~--~k~~~~--~aF~iCGvLY~v~S~~~~~~~i~yaydt~~~~~~~~~ip 212 (249)
T KOG3545|consen 143 ---NAGTIVLSKLDPETLEVERTWNTTL--PKRSAG--NAFMICGVLYVVHSYNCTHTQISYAYDTTTGTQERIDLP 212 (249)
T ss_pred ---cCCcEEeeccCHHHhheeeeecccc--CCCCcC--ceEEEeeeeEEEeccccCCceEEEEEEcCCCceeccccc
Confidence 3556666777763 11 64222 111111 122235666665542 33 6999999999888765
No 67
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=88.95 E-value=18 Score=33.13 Aligned_cols=148 Identities=14% Similarity=0.073 Sum_probs=86.5
Q ss_pred CEEEEEECCCCCeeeecCC---CCeeEEeCCcceEEECce-EEEEeecccccccccEEEEEECCCceeeEe----CCCCC
Q 045675 179 AIAEVYSTSTGKWKEVAAG---TGSCVIYGGQDAVAVKGV-LHWIANGIGVLVNEKFVVSYDMNLELFWRT----AMPEL 250 (382)
Q Consensus 179 ~~~~vyss~t~~W~~~~~~---~~~~~~~~~~~~v~~~G~-lywl~~~~~~~~~~~~i~~fD~~~~~~~~i----~~P~~ 250 (382)
.++.+|+...+.-...... +...+. +-..+-||+ +|.++.-. .+-.+..+|....++..+ .+|..
T Consensus 167 Dri~~y~~~dg~L~~~~~~~v~~G~GPR---Hi~FHpn~k~aY~v~EL~----stV~v~~y~~~~g~~~~lQ~i~tlP~d 239 (346)
T COG2706 167 DRIFLYDLDDGKLTPADPAEVKPGAGPR---HIVFHPNGKYAYLVNELN----STVDVLEYNPAVGKFEELQTIDTLPED 239 (346)
T ss_pred ceEEEEEcccCccccccccccCCCCCcc---eEEEcCCCcEEEEEeccC----CEEEEEEEcCCCceEEEeeeeccCccc
Confidence 3888999987765544433 221111 223344664 56665544 234666677777888776 56776
Q ss_pred CCC--CeeeEE-EeCCeEEEEEecCCCccCCCCCeEEEEEECCCCC-eeEEEEeecCCc-ccceEEeeCCcEEEEE-cC-
Q 045675 251 PTD--CYVKAL-SYDQSLALAVYPGLGFRSRLSNRFELWVMNEGKG-WTRTFNTAFERI-AWPVGSFRDSKIIMKS-VD- 323 (382)
Q Consensus 251 ~~~--~~~~l~-~~~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~-W~~~~~i~~~~~-~~~~~~~~~g~l~l~~-~~- 323 (382)
..+ +...+- .-+|+...+.-. .-..|.++..++..+ =+.+...+.... -+-+-+..+|+++++. .+
T Consensus 240 F~g~~~~aaIhis~dGrFLYasNR-------g~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~s 312 (346)
T COG2706 240 FTGTNWAAAIHISPDGRFLYASNR-------GHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKS 312 (346)
T ss_pred cCCCCceeEEEECCCCCEEEEecC-------CCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCC
Confidence 654 222332 347775544443 255777788887745 444444454443 4455666677755444 33
Q ss_pred ---eEEEEeCCCCcEEEEee
Q 045675 324 ---QFFLFNPKTKRNFILPI 340 (382)
Q Consensus 324 ---~~~~yd~~t~~~~~v~~ 340 (382)
.++.-|.+|+++..+..
T Consensus 313 d~i~vf~~d~~TG~L~~~~~ 332 (346)
T COG2706 313 DNITVFERDKETGRLTLLGR 332 (346)
T ss_pred CcEEEEEEcCCCceEEeccc
Confidence 67788999999888753
No 68
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=88.52 E-value=16 Score=31.93 Aligned_cols=107 Identities=13% Similarity=0.058 Sum_probs=68.3
Q ss_pred ceEEE--CceEEEEeecccccccccEEEEEECCCceeeEeCCCCCCCCCeeeEEE--eCCeEEEEEecCCCccCCCCCeE
Q 045675 208 DAVAV--KGVLHWIANGIGVLVNEKFVVSYDMNLELFWRTAMPELPTDCYVKALS--YDQSLALAVYPGLGFRSRLSNRF 283 (382)
Q Consensus 208 ~~v~~--~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~~~l~~--~~g~L~~~~~~~~~~~~~~~~~~ 283 (382)
.+++. +|.+||..... ..|..+|+.+++...+..|.. ..++. -+|+|++.... .+
T Consensus 4 gp~~d~~~g~l~~~D~~~------~~i~~~~~~~~~~~~~~~~~~-----~G~~~~~~~g~l~v~~~~----------~~ 62 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPG------GRIYRVDPDTGEVEVIDLPGP-----NGMAFDRPDGRLYVADSG----------GI 62 (246)
T ss_dssp EEEEETTTTEEEEEETTT------TEEEEEETTTTEEEEEESSSE-----EEEEEECTTSEEEEEETT----------CE
T ss_pred ceEEECCCCEEEEEEcCC------CEEEEEECCCCeEEEEecCCC-----ceEEEEccCCEEEEEEcC----------ce
Confidence 45555 69999997655 589999999999988877762 23333 47888776654 12
Q ss_pred EEEEECCCCC-eeEEEEeecC--Cc--ccceEEeeCCcEEEEEcC----------eEEEEeCCCCcEEEE
Q 045675 284 ELWVMNEGKG-WTRTFNTAFE--RI--AWPVGSFRDSKIIMKSVD----------QFFLFNPKTKRNFIL 338 (382)
Q Consensus 284 ~iW~l~~~~~-W~~~~~i~~~--~~--~~~~~~~~~g~l~l~~~~----------~~~~yd~~t~~~~~v 338 (382)
.+. +...+ ++.....+.. .. ..-+.+..+|.|++.... +++.++.. ++.+.+
T Consensus 63 ~~~--d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~ 129 (246)
T PF08450_consen 63 AVV--DPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVV 129 (246)
T ss_dssp EEE--ETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEE
T ss_pred EEE--ecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEE
Confidence 222 32223 7777776422 23 334666677888877642 48899998 665555
No 69
>PLN02772 guanylate kinase
Probab=88.47 E-value=3.5 Score=38.87 Aligned_cols=76 Identities=9% Similarity=0.001 Sum_probs=54.9
Q ss_pred cceEEECceEEEEeecccccccccEEEEEECCCceeeEe----CCCCCCCCCeeeEEEeCCeEEEEEecCCCccCCCCCe
Q 045675 207 QDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRT----AMPELPTDCYVKALSYDQSLALAVYPGLGFRSRLSNR 282 (382)
Q Consensus 207 ~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i----~~P~~~~~~~~~l~~~~g~L~~~~~~~~~~~~~~~~~ 282 (382)
+.++..+.++|.++++.........+..||..|.+|..- ..|..+ +.+..+..-+++|.++... ....
T Consensus 28 ~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r-~GhSa~v~~~~rilv~~~~-------~~~~ 99 (398)
T PLN02772 28 ETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPC-KGYSAVVLNKDRILVIKKG-------SAPD 99 (398)
T ss_pred ceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCC-CcceEEEECCceEEEEeCC-------CCCc
Confidence 688999999999998654322345899999999999864 233333 2455555668999998876 2455
Q ss_pred EEEEEECC
Q 045675 283 FELWVMNE 290 (382)
Q Consensus 283 ~~iW~l~~ 290 (382)
=.||.|.-
T Consensus 100 ~~~w~l~~ 107 (398)
T PLN02772 100 DSIWFLEV 107 (398)
T ss_pred cceEEEEc
Confidence 78999864
No 70
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=88.41 E-value=11 Score=35.74 Aligned_cols=107 Identities=11% Similarity=0.113 Sum_probs=61.6
Q ss_pred ceEEECceEEEEeecccccccccEEEEEECCCc--eeeEeCCCCCCC--------CCeeeEEEeCCeEEEEEecCCCccC
Q 045675 208 DAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLE--LFWRTAMPELPT--------DCYVKALSYDQSLALAVYPGLGFRS 277 (382)
Q Consensus 208 ~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~--~~~~i~~P~~~~--------~~~~~l~~~~g~L~~~~~~~~~~~~ 277 (382)
.++..+|.+|.....+ .+.+||..+. .|+. .++.... ......+..+|++++....
T Consensus 64 sPvv~~~~vy~~~~~g-------~l~ald~~tG~~~W~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~------ 129 (394)
T PRK11138 64 HPAVAYNKVYAADRAG-------LVKALDADTGKEIWSV-DLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEK------ 129 (394)
T ss_pred ccEEECCEEEEECCCC-------eEEEEECCCCcEeeEE-cCCCcccccccccccccccccEEECCEEEEEcCC------
Confidence 5678899999987655 8999998754 4543 3322100 0112245667887764332
Q ss_pred CCCCeEEEEEECCCCC---eeEEEEeecCCcccceEEeeCCcEEEEEcC-eEEEEeCCCCcEEE
Q 045675 278 RLSNRFELWVMNEGKG---WTRTFNTAFERIAWPVGSFRDSKIIMKSVD-QFFLFNPKTKRNFI 337 (382)
Q Consensus 278 ~~~~~~~iW~l~~~~~---W~~~~~i~~~~~~~~~~~~~~g~l~l~~~~-~~~~yd~~t~~~~~ 337 (382)
. .+..++...| |+... +-.....|+. .++.|++...+ .++.+|.++++..+
T Consensus 130 ---g--~l~ald~~tG~~~W~~~~--~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W 184 (394)
T PRK11138 130 ---G--QVYALNAEDGEVAWQTKV--AGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKW 184 (394)
T ss_pred ---C--EEEEEECCCCCCcccccC--CCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEee
Confidence 2 3444543223 87643 2111133433 24556666555 89999999998554
No 71
>PRK04043 tolB translocation protein TolB; Provisional
Probab=87.51 E-value=28 Score=33.49 Aligned_cols=191 Identities=10% Similarity=0.088 Sum_probs=103.1
Q ss_pred ceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEECCCCCeeeecCCCC
Q 045675 120 GMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYSTSTGKWKEVAAGTG 199 (382)
Q Consensus 120 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~ 199 (382)
...+++.|..|++...|-..+.. .....+.|.+ ...++.... .....+.+++..++.++.+...+.
T Consensus 212 ~~~Iyv~dl~tg~~~~lt~~~g~----------~~~~~~SPDG-~~la~~~~~---~g~~~Iy~~dl~~g~~~~LT~~~~ 277 (419)
T PRK04043 212 KPTLYKYNLYTGKKEKIASSQGM----------LVVSDVSKDG-SKLLLTMAP---KGQPDIYLYDTNTKTLTQITNYPG 277 (419)
T ss_pred CCEEEEEECCCCcEEEEecCCCc----------EEeeEECCCC-CEEEEEEcc---CCCcEEEEEECCCCcEEEcccCCC
Confidence 45788899999888777543221 1122344432 333333221 234578888988888887654422
Q ss_pred eeEEeCCcceEEECc-eEEEEeecccccccccEEEEEECCCceeeEeCCCCCCCCCeeeEEEeCCe-EEEEEecCCCccC
Q 045675 200 SCVIYGGQDAVAVKG-VLHWIANGIGVLVNEKFVVSYDMNLELFWRTAMPELPTDCYVKALSYDQS-LALAVYPGLGFRS 277 (382)
Q Consensus 200 ~~~~~~~~~~v~~~G-~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~~~l~~~~g~-L~~~~~~~~~~~~ 277 (382)
.. ......-+| .+|+.....+ ...|...|+.+.+.+.+-.-.. .... ..-+|+ |.++... ....
T Consensus 278 ~d----~~p~~SPDG~~I~F~Sdr~g----~~~Iy~~dl~~g~~~rlt~~g~---~~~~-~SPDG~~Ia~~~~~--~~~~ 343 (419)
T PRK04043 278 ID----VNGNFVEDDKRIVFVSDRLG----YPNIFMKKLNSGSVEQVVFHGK---NNSS-VSTYKNYIVYSSRE--TNNE 343 (419)
T ss_pred cc----CccEECCCCCEEEEEECCCC----CceEEEEECCCCCeEeCccCCC---cCce-ECCCCCEEEEEEcC--CCcc
Confidence 11 113334456 6888776542 3479999999888866532111 1122 223555 4444433 1000
Q ss_pred CCCCeEEEEEECCCCC-eeEEEEeecCCcccceEEeeCCc-EEEEEcC----eEEEEeCCCCcEEEEeee
Q 045675 278 RLSNRFELWVMNEGKG-WTRTFNTAFERIAWPVGSFRDSK-IIMKSVD----QFFLFNPKTKRNFILPID 341 (382)
Q Consensus 278 ~~~~~~~iW~l~~~~~-W~~~~~i~~~~~~~~~~~~~~g~-l~l~~~~----~~~~yd~~t~~~~~v~~~ 341 (382)
......+||.++-..+ +..+..- .......+..+|+ |++.... .+..+++..+.-.++...
T Consensus 344 ~~~~~~~I~v~d~~~g~~~~LT~~---~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~~~l~~~ 410 (419)
T PRK04043 344 FGKNTFNLYLISTNSDYIRRLTAN---GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKSFLFPLK 410 (419)
T ss_pred cCCCCcEEEEEECCCCCeEECCCC---CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCeeEEeecC
Confidence 1113467888764323 5443321 1222234456787 5565543 688999988877777653
No 72
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=87.01 E-value=28 Score=33.01 Aligned_cols=133 Identities=12% Similarity=0.184 Sum_probs=73.6
Q ss_pred CEEEEEECCCC--CeeeecCCCCeeEEeCCcceEEECceEEEEeecccccccccEEEEEECCCc--eeeE-eCCCCCCCC
Q 045675 179 AIAEVYSTSTG--KWKEVAAGTGSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLE--LFWR-TAMPELPTD 253 (382)
Q Consensus 179 ~~~~vyss~t~--~W~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~--~~~~-i~~P~~~~~ 253 (382)
..+..++..++ .|+.....+..... ....++..+|.+|+....+ .+.++|..+. .|+. +..|.....
T Consensus 170 g~l~ald~~tG~~~W~~~~~~~~~~~~-~~~sP~v~~~~v~~~~~~g-------~v~a~d~~~G~~~W~~~~~~~~~~~~ 241 (394)
T PRK11138 170 GMLQALNESDGAVKWTVNLDVPSLTLR-GESAPATAFGGAIVGGDNG-------RVSAVLMEQGQLIWQQRISQPTGATE 241 (394)
T ss_pred CEEEEEEccCCCEeeeecCCCCccccc-CCCCCEEECCEEEEEcCCC-------EEEEEEccCChhhheeccccCCCccc
Confidence 36788888776 58875433221111 1135667788888866554 7999999875 4543 223322110
Q ss_pred ------CeeeEEEeCCeEEEEEecCCCccCCCCCeEEEEEECCCCC---eeEEEEeecCCcccceEEeeCCcEEEEEcC-
Q 045675 254 ------CYVKALSYDQSLALAVYPGLGFRSRLSNRFELWVMNEGKG---WTRTFNTAFERIAWPVGSFRDSKIIMKSVD- 323 (382)
Q Consensus 254 ------~~~~l~~~~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~---W~~~~~i~~~~~~~~~~~~~~g~l~l~~~~- 323 (382)
....-+..+|.|++.... . .++.++-..| |.... .....+ . ..++.||+...+
T Consensus 242 ~~~~~~~~~sP~v~~~~vy~~~~~---------g--~l~ald~~tG~~~W~~~~----~~~~~~-~-~~~~~vy~~~~~g 304 (394)
T PRK11138 242 IDRLVDVDTTPVVVGGVVYALAYN---------G--NLVALDLRSGQIVWKREY----GSVNDF-A-VDGGRIYLVDQND 304 (394)
T ss_pred hhcccccCCCcEEECCEEEEEEcC---------C--eEEEEECCCCCEEEeecC----CCccCc-E-EECCEEEEEcCCC
Confidence 011223457777765543 2 2334443223 87532 111222 2 235668877766
Q ss_pred eEEEEeCCCCcEE
Q 045675 324 QFFLFNPKTKRNF 336 (382)
Q Consensus 324 ~~~~yd~~t~~~~ 336 (382)
+++++|.++++..
T Consensus 305 ~l~ald~~tG~~~ 317 (394)
T PRK11138 305 RVYALDTRGGVEL 317 (394)
T ss_pred eEEEEECCCCcEE
Confidence 9999999998643
No 73
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=86.63 E-value=22 Score=31.48 Aligned_cols=176 Identities=15% Similarity=0.091 Sum_probs=84.4
Q ss_pred ceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEECCCCCeee-ecCCC
Q 045675 120 GMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYSTSTGKWKE-VAAGT 198 (382)
Q Consensus 120 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vyss~t~~W~~-~~~~~ 198 (382)
...+.+||+.|++....-..... ..++.+++..+ +-++.. . ....+.+|+..++.... .....
T Consensus 10 d~~v~~~d~~t~~~~~~~~~~~~----------~~~l~~~~dg~-~l~~~~-~----~~~~v~~~d~~~~~~~~~~~~~~ 73 (300)
T TIGR03866 10 DNTISVIDTATLEVTRTFPVGQR----------PRGITLSKDGK-LLYVCA-S----DSDTIQVIDLATGEVIGTLPSGP 73 (300)
T ss_pred CCEEEEEECCCCceEEEEECCCC----------CCceEECCCCC-EEEEEE-C----CCCeEEEEECCCCcEEEeccCCC
Confidence 45788899988764432111110 11355666543 221221 1 23478889888776533 21111
Q ss_pred CeeEEeCCcceEEECceEEEEeecccccccccEEEEEECCCcee-eEeCCCCCCCCCeeeEE-EeCCeEEEEEecCCCcc
Q 045675 199 GSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELF-WRTAMPELPTDCYVKAL-SYDQSLALAVYPGLGFR 276 (382)
Q Consensus 199 ~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~-~~i~~P~~~~~~~~~l~-~~~g~L~~~~~~~~~~~ 276 (382)
.. . ...+.-+|...++.... ...|..+|+.+.+- ..++.+... ..+. .-+|.+.++...
T Consensus 74 ~~--~---~~~~~~~g~~l~~~~~~-----~~~l~~~d~~~~~~~~~~~~~~~~----~~~~~~~dg~~l~~~~~----- 134 (300)
T TIGR03866 74 DP--E---LFALHPNGKILYIANED-----DNLVTVIDIETRKVLAEIPVGVEP----EGMAVSPDGKIVVNTSE----- 134 (300)
T ss_pred Cc--c---EEEECCCCCEEEEEcCC-----CCeEEEEECCCCeEEeEeeCCCCc----ceEEECCCCCEEEEEec-----
Confidence 11 1 11222345544444332 24788899987542 233322111 1222 236776665554
Q ss_pred CCCCCeEEEEEECCCCCeeEEEEeecCCcccceEEeeCCcEE-EEEc--CeEEEEeCCCCcE
Q 045675 277 SRLSNRFELWVMNEGKGWTRTFNTAFERIAWPVGSFRDSKII-MKSV--DQFFLFNPKTKRN 335 (382)
Q Consensus 277 ~~~~~~~~iW~l~~~~~W~~~~~i~~~~~~~~~~~~~~g~l~-l~~~--~~~~~yd~~t~~~ 335 (382)
....+.+|..+.. .....+........+.+..+|..+ +... +.+..||+++++.
T Consensus 135 --~~~~~~~~d~~~~---~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~ 191 (300)
T TIGR03866 135 --TTNMAHFIDTKTY---EIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKV 191 (300)
T ss_pred --CCCeEEEEeCCCC---eEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCccee
Confidence 1334455544332 333333222222334555677644 4433 3899999998764
No 74
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=85.89 E-value=19 Score=33.91 Aligned_cols=104 Identities=12% Similarity=0.145 Sum_probs=56.9
Q ss_pred ceEEECceEEEEeecccccccccEEEEEECCCce--eeEeCCCCCCCCCeeeEEEeCCeEEEEEecCCCccCCCCCeEEE
Q 045675 208 DAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLEL--FWRTAMPELPTDCYVKALSYDQSLALAVYPGLGFRSRLSNRFEL 285 (382)
Q Consensus 208 ~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~--~~~i~~P~~~~~~~~~l~~~~g~L~~~~~~~~~~~~~~~~~~~i 285 (382)
.++..+|.+|.....+ .+.+||..+.+ |+ ..++... ....+..++.+++.... . .+
T Consensus 60 ~p~v~~~~v~v~~~~g-------~v~a~d~~tG~~~W~-~~~~~~~---~~~p~v~~~~v~v~~~~---------g--~l 117 (377)
T TIGR03300 60 QPAVAGGKVYAADADG-------TVVALDAETGKRLWR-VDLDERL---SGGVGADGGLVFVGTEK---------G--EV 117 (377)
T ss_pred ceEEECCEEEEECCCC-------eEEEEEccCCcEeee-ecCCCCc---ccceEEcCCEEEEEcCC---------C--EE
Confidence 5677788998876554 89999987554 43 2444332 12233445666543332 2 34
Q ss_pred EEECCCCC---eeEEEEeecCCcccceEEeeCCcEEEEEcC-eEEEEeCCCCcEEE
Q 045675 286 WVMNEGKG---WTRTFNTAFERIAWPVGSFRDSKIIMKSVD-QFFLFNPKTKRNFI 337 (382)
Q Consensus 286 W~l~~~~~---W~~~~~i~~~~~~~~~~~~~~g~l~l~~~~-~~~~yd~~t~~~~~ 337 (382)
+.++...| |.... +-.....|+. .++.|++...+ .++++|.++++..+
T Consensus 118 ~ald~~tG~~~W~~~~--~~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W 169 (377)
T TIGR03300 118 IALDAEDGKELWRAKL--SSEVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLW 169 (377)
T ss_pred EEEECCCCcEeeeecc--CceeecCCEE--ECCEEEEECCCCeEEEEEcCCCceee
Confidence 44443223 76432 1111122322 34556665555 89999999887543
No 75
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=85.65 E-value=18 Score=33.67 Aligned_cols=86 Identities=9% Similarity=0.031 Sum_probs=53.0
Q ss_pred EEEEEECCCCCeeeecCCCCeeEEeCCcceEEECceEEEEeecccccccccEEEEEECCCc-----------eeeEeCCC
Q 045675 180 IAEVYSTSTGKWKEVAAGTGSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLE-----------LFWRTAMP 248 (382)
Q Consensus 180 ~~~vyss~t~~W~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~-----------~~~~i~~P 248 (382)
....|+-++.+|+.++.-.- ++ . -.+.|+..-=-|++-..... ...+.++|+.+. .|..+..|
T Consensus 200 GTysfDt~~~~W~~~GdW~L--PF-~-G~a~y~~el~~W~Gls~~~~--~~~lca~dv~~~~~~~~pp~~~~~~~~l~~~ 273 (342)
T PF07893_consen 200 GTYSFDTESHEWRKHGDWML--PF-H-GQAEYVPELDLWFGLSSDGG--GGHLCACDVSSADSASPPPEWKLTWEELFPP 273 (342)
T ss_pred EEEEEEcCCcceeeccceec--Cc-C-CccEECCCcCeEEEeccCCC--CcEEEEEeccccccCCCCCcceecccccccc
Confidence 57888888899999866511 12 1 26677766667887765331 148999999763 22223333
Q ss_pred CCCCCCeeeEEEe-CCeEEEEEec
Q 045675 249 ELPTDCYVKALSY-DQSLALAVYP 271 (382)
Q Consensus 249 ~~~~~~~~~l~~~-~g~L~~~~~~ 271 (382)
.........|+-+ +|+.|++...
T Consensus 274 ~~~~~~~~~Lv~lG~grFCi~~~~ 297 (342)
T PF07893_consen 274 EEWRHVGATLVYLGSGRFCIVEFF 297 (342)
T ss_pred ccccccCceEEECCCCCEEEEEEe
Confidence 3322234555555 6789998875
No 76
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=85.25 E-value=33 Score=32.10 Aligned_cols=204 Identities=11% Similarity=0.019 Sum_probs=107.7
Q ss_pred eeeccCceE-EEeeCCCCceeEEEEcccccceec-cCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCE
Q 045675 103 IVGSCNGLL-CLDVSSAFGMAFVLWNPATNEFKG-LPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAI 180 (382)
Q Consensus 103 ~~~s~~Gll-~~~~~~~~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~ 180 (382)
+.-|-+|-. ++.+.. ....+.|.|..+++... +|-+.. ...|-.....|.+.++-. .
T Consensus 110 ~~ls~dgk~l~V~n~~-p~~~V~VvD~~~~kvv~ei~vp~~-------------~~vy~t~e~~~~~~~~Dg-------~ 168 (352)
T TIGR02658 110 TSLTPDNKTLLFYQFS-PSPAVGVVDLEGKAFVRMMDVPDC-------------YHIFPTANDTFFMHCRDG-------S 168 (352)
T ss_pred EEECCCCCEEEEecCC-CCCEEEEEECCCCcEEEEEeCCCC-------------cEEEEecCCccEEEeecC-------c
Confidence 344557754 444432 15688999999999766 554322 122223334455444422 2
Q ss_pred EEEEECCC-CCeeeecCCC----CeeEEeCCcce-EEECceEEEEeecccccccccEEEEEECCCc------eeeEeCCC
Q 045675 181 AEVYSTST-GKWKEVAAGT----GSCVIYGGQDA-VAVKGVLHWIANGIGVLVNEKFVVSYDMNLE------LFWRTAMP 248 (382)
Q Consensus 181 ~~vyss~t-~~W~~~~~~~----~~~~~~~~~~~-v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~------~~~~i~~P 248 (382)
...+++++ ++ ......+ ...+. ..++. .-.+|..+|+...+ .|...|+++. .|..+..-
T Consensus 169 ~~~v~~d~~g~-~~~~~~~vf~~~~~~v-~~rP~~~~~dg~~~~vs~eG-------~V~~id~~~~~~~~~~~~~~~~~~ 239 (352)
T TIGR02658 169 LAKVGYGTKGN-PKIKPTEVFHPEDEYL-INHPAYSNKSGRLVWPTYTG-------KIFQIDLSSGDAKFLPAIEAFTEA 239 (352)
T ss_pred eEEEEecCCCc-eEEeeeeeecCCcccc-ccCCceEcCCCcEEEEecCC-------eEEEEecCCCcceecceeeecccc
Confidence 22333322 22 1111110 00111 11222 23379999998775 7888886443 34333211
Q ss_pred C---CCC-C-Ce-eeEEEeCCeEEEEEecCCCccCCCCCeEEEEEECCCCCeeEEEEeecCCcccceEEeeCCc-EEEEE
Q 045675 249 E---LPT-D-CY-VKALSYDQSLALAVYPGLGFRSRLSNRFELWVMNEGKGWTRTFNTAFERIAWPVGSFRDSK-IIMKS 321 (382)
Q Consensus 249 ~---~~~-~-~~-~~l~~~~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~W~~~~~i~~~~~~~~~~~~~~g~-l~l~~ 321 (382)
. ... + .. ..+.--+++|++..+.. ..+++....=+||+++-. .+..+.+|++..-...+.+..+|+ +++..
T Consensus 240 ~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~-~~~thk~~~~~V~ViD~~-t~kvi~~i~vG~~~~~iavS~Dgkp~lyvt 317 (352)
T TIGR02658 240 EKADGWRPGGWQQVAYHRARDRIYLLADQR-AKWTHKTASRFLFVVDAK-TGKRLRKIELGHEIDSINVSQDAKPLLYAL 317 (352)
T ss_pred ccccccCCCcceeEEEcCCCCEEEEEecCC-ccccccCCCCEEEEEECC-CCeEEEEEeCCCceeeEEECCCCCeEEEEe
Confidence 1 111 1 11 22222356777744321 112222333488888864 578889998877677788888888 66655
Q ss_pred cC---eEEEEeCCCCc-EEEE
Q 045675 322 VD---QFFLFNPKTKR-NFIL 338 (382)
Q Consensus 322 ~~---~~~~yd~~t~~-~~~v 338 (382)
.. .+.++|..+.+ .+.+
T Consensus 318 n~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 318 STGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred CCCCCcEEEEECcCCeEEeee
Confidence 53 79999999885 4445
No 77
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=84.74 E-value=32 Score=31.57 Aligned_cols=117 Identities=11% Similarity=0.024 Sum_probs=63.8
Q ss_pred EECceEEEEeecccccccccEEEEEECC--CceeeEe----CCCCCCCCCe--eeEE-EeCCeEEEEEecCCCccCCCCC
Q 045675 211 AVKGVLHWIANGIGVLVNEKFVVSYDMN--LELFWRT----AMPELPTDCY--VKAL-SYDQSLALAVYPGLGFRSRLSN 281 (382)
Q Consensus 211 ~~~G~lywl~~~~~~~~~~~~i~~fD~~--~~~~~~i----~~P~~~~~~~--~~l~-~~~g~L~~~~~~~~~~~~~~~~ 281 (382)
.-+|...++.... ...|.+||+. ++++..+ ..|....... ..+. .-+|+..++... ...
T Consensus 183 ~pdg~~lyv~~~~-----~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~-------~~~ 250 (330)
T PRK11028 183 HPNQQYAYCVNEL-----NSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDR-------TAS 250 (330)
T ss_pred CCCCCEEEEEecC-----CCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecC-------CCC
Confidence 3455555554432 2477777775 4454333 2343221111 1122 236664444433 367
Q ss_pred eEEEEEECCCCC-eeEEEEeecCCcccceEEeeCCc-EEEEEcC--eEEEE--eCCCCcEEEEe
Q 045675 282 RFELWVMNEGKG-WTRTFNTAFERIAWPVGSFRDSK-IIMKSVD--QFFLF--NPKTKRNFILP 339 (382)
Q Consensus 282 ~~~iW~l~~~~~-W~~~~~i~~~~~~~~~~~~~~g~-l~l~~~~--~~~~y--d~~t~~~~~v~ 339 (382)
.+.+|.++...+ +..+..++.....+-+.+..+|+ |+..... .+.+| |..++.++.+.
T Consensus 251 ~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l~~~~ 314 (330)
T PRK11028 251 LISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLLTELG 314 (330)
T ss_pred eEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCcEEEcc
Confidence 899999976533 77777776543344566667777 5555542 55555 55677777764
No 78
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=84.55 E-value=29 Score=32.65 Aligned_cols=136 Identities=12% Similarity=0.157 Sum_probs=78.6
Q ss_pred EEEEEECCCCCeeeecCCCCeeEEeCCcc-eEEECceEEEEeecccccccccEEEEEECCCce--eeEeCCCCCCCCCee
Q 045675 180 IAEVYSTSTGKWKEVAAGTGSCVIYGGQD-AVAVKGVLHWIANGIGVLVNEKFVVSYDMNLEL--FWRTAMPELPTDCYV 256 (382)
Q Consensus 180 ~~~vyss~t~~W~~~~~~~~~~~~~~~~~-~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~--~~~i~~P~~~~~~~~ 256 (382)
.......++-.|...-........ . .. +++.+|++|.....+ .|.+||+.+.. |+.-... .......
T Consensus 36 ~~~~~~~g~~~W~~~~~~~~~~~~-~-~~~~~~~dg~v~~~~~~G-------~i~A~d~~~g~~~W~~~~~~-~~~~~~~ 105 (370)
T COG1520 36 AVANNTSGTLLWSVSLGSGGGGIY-A-GPAPADGDGTVYVGTRDG-------NIFALNPDTGLVKWSYPLLG-AVAQLSG 105 (370)
T ss_pred EEEcccCcceeeeeecccCccceE-e-ccccEeeCCeEEEecCCC-------cEEEEeCCCCcEEecccCcC-cceeccC
Confidence 444455566788654222111122 1 23 599999999985544 89999998866 7654443 0000122
Q ss_pred eEEEeCCeEEEEEecCCCccCCCCCeEEEEEECCCCC---eeEEEEeecCCcccceEEeeCCcEEEEEc-CeEEEEeCCC
Q 045675 257 KALSYDQSLALAVYPGLGFRSRLSNRFELWVMNEGKG---WTRTFNTAFERIAWPVGSFRDSKIIMKSV-DQFFLFNPKT 332 (382)
Q Consensus 257 ~l~~~~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~---W~~~~~i~~~~~~~~~~~~~~g~l~l~~~-~~~~~yd~~t 332 (382)
.+...+|+|++-... . +++.+++.+| |....... ..+..+.. ..++.+++... ..+++.|.++
T Consensus 106 ~~~~~~G~i~~g~~~--------g---~~y~ld~~~G~~~W~~~~~~~-~~~~~~~v-~~~~~v~~~s~~g~~~al~~~t 172 (370)
T COG1520 106 PILGSDGKIYVGSWD--------G---KLYALDASTGTLVWSRNVGGS-PYYASPPV-VGDGTVYVGTDDGHLYALNADT 172 (370)
T ss_pred ceEEeCCeEEEeccc--------c---eEEEEECCCCcEEEEEecCCC-eEEecCcE-EcCcEEEEecCCCeEEEEEccC
Confidence 233338887765554 2 7888888545 88665331 11122322 23555666644 4999999998
Q ss_pred CcEEEE
Q 045675 333 KRNFIL 338 (382)
Q Consensus 333 ~~~~~v 338 (382)
++.++.
T Consensus 173 G~~~W~ 178 (370)
T COG1520 173 GTLKWT 178 (370)
T ss_pred CcEEEE
Confidence 876544
No 79
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=84.21 E-value=1.4 Score=42.11 Aligned_cols=143 Identities=8% Similarity=-0.067 Sum_probs=83.7
Q ss_pred EEcccccceeccCCCCCcccccc--ceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEECCCCCeeeecCC---CC
Q 045675 125 LWNPATNEFKGLPTPSLTESRLK--TFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYSTSTGKWKEVAAG---TG 199 (382)
Q Consensus 125 V~NP~T~~~~~LP~~~~~~~~~~--~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vyss~t~~W~~~~~~---~~ 199 (382)
.=-|.+-+|.++|+-........ ......+.+.+++.++-..+.+..+ +......+.+|+.+.+.|..+... |+
T Consensus 233 ~q~ey~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWd-G~~~l~DFW~Y~v~e~~W~~iN~~t~~PG 311 (723)
T KOG2437|consen 233 SQQEYKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWD-GTQDLADFWAYSVKENQWTCINRDTEGPG 311 (723)
T ss_pred hcccccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcc-cchhHHHHHhhcCCcceeEEeecCCCCCc
Confidence 34567888888887653211100 0111234466666555444444332 112234788999999999887654 44
Q ss_pred eeEEeCCcceEEECc--eEEEEeeccccc-----ccccEEEEEECCCceeeEeCCCCCCCC-----CeeeEEEeCCe--E
Q 045675 200 SCVIYGGQDAVAVKG--VLHWIANGIGVL-----VNEKFVVSYDMNLELFWRTAMPELPTD-----CYVKALSYDQS--L 265 (382)
Q Consensus 200 ~~~~~~~~~~v~~~G--~lywl~~~~~~~-----~~~~~i~~fD~~~~~~~~i~~P~~~~~-----~~~~l~~~~g~--L 265 (382)
.+.. ++.|..-. ++|-++..-..+ ....-+..||..++.|..+..-....+ ....+++.+.+ |
T Consensus 312 ~RsC---HRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~i 388 (723)
T KOG2437|consen 312 ARSC---HRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMI 388 (723)
T ss_pred chhh---hhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceE
Confidence 4433 55554444 777776543322 244578999999999999866544322 34445555555 8
Q ss_pred EEEEec
Q 045675 266 ALAVYP 271 (382)
Q Consensus 266 ~~~~~~ 271 (382)
||+++.
T Consensus 389 yVfGGr 394 (723)
T KOG2437|consen 389 YVFGGR 394 (723)
T ss_pred EEecCe
Confidence 887775
No 80
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=83.58 E-value=43 Score=32.11 Aligned_cols=159 Identities=13% Similarity=0.153 Sum_probs=88.2
Q ss_pred EEEEEECCCCCeee-ecCCCCeeEEeCCcceEEECceEEEEeecccccccccEEEEEECCCcee-eEe---CCCCCCCCC
Q 045675 180 IAEVYSTSTGKWKE-VAAGTGSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELF-WRT---AMPELPTDC 254 (382)
Q Consensus 180 ~~~vyss~t~~W~~-~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~-~~i---~~P~~~~~~ 254 (382)
.+++|++.+..=++ ....... .. ...+..+|.|...++.. ..|-.||..+... +.+ ..|..
T Consensus 49 rvqly~~~~~~~~k~~srFk~~-v~---s~~fR~DG~LlaaGD~s------G~V~vfD~k~r~iLR~~~ah~apv~---- 114 (487)
T KOG0310|consen 49 RVQLYSSVTRSVRKTFSRFKDV-VY---SVDFRSDGRLLAAGDES------GHVKVFDMKSRVILRQLYAHQAPVH---- 114 (487)
T ss_pred EEEEEecchhhhhhhHHhhccc-ee---EEEeecCCeEEEccCCc------CcEEEeccccHHHHHHHhhccCcee----
Confidence 79999998865433 2221111 11 23445679999877654 5889999666322 222 22221
Q ss_pred eeeEEEeCCeEEEEEecCCCccCCCCCeEEEEEECCCCCeeEEEEeec-CCcccceEEeeCCc-EEEEEcC--eEEEEeC
Q 045675 255 YVKALSYDQSLALAVYPGLGFRSRLSNRFELWVMNEGKGWTRTFNTAF-ERIAWPVGSFRDSK-IIMKSVD--QFFLFNP 330 (382)
Q Consensus 255 ~~~l~~~~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~W~~~~~i~~-~~~~~~~~~~~~g~-l~l~~~~--~~~~yd~ 330 (382)
.......++.+.+.+.. .....+|.+... -+ ...+.- .+.++-..+....+ +++.... .+-.||.
T Consensus 115 ~~~f~~~d~t~l~s~sD--------d~v~k~~d~s~a--~v-~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~Dt 183 (487)
T KOG0310|consen 115 VTKFSPQDNTMLVSGSD--------DKVVKYWDLSTA--YV-QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDT 183 (487)
T ss_pred EEEecccCCeEEEecCC--------CceEEEEEcCCc--EE-EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEe
Confidence 23333455665554443 778899998876 22 334422 22345455554434 5554443 8889999
Q ss_pred CCCcEEEEeeeCCCCCeEEEEEEee--ceeecCCCCc
Q 045675 331 KTKRNFILPIDSGMGYSYKVFTYVD--SIVAVNGEND 365 (382)
Q Consensus 331 ~t~~~~~v~~~~~~~~~~~~~~y~~--SLv~~~~~~~ 365 (382)
++..-+.+.+..+.. -....|.| |++-.+++++
T Consensus 184 R~~~~~v~elnhg~p--Ve~vl~lpsgs~iasAgGn~ 218 (487)
T KOG0310|consen 184 RSLTSRVVELNHGCP--VESVLALPSGSLIASAGGNS 218 (487)
T ss_pred ccCCceeEEecCCCc--eeeEEEcCCCCEEEEcCCCe
Confidence 998755556655443 33344444 4555555543
No 81
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=83.47 E-value=4.4 Score=30.76 Aligned_cols=44 Identities=7% Similarity=0.042 Sum_probs=31.2
Q ss_pred eeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEe
Q 045675 121 MAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVN 172 (382)
Q Consensus 121 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~ 172 (382)
..++++||.|+.|..+-+.+... ..+.+-+++..+.|+|++...
T Consensus 9 A~Vm~~d~~tk~W~P~~~~~~~l--------s~V~~~~~~~~~~yrIvg~~~ 52 (111)
T cd01207 9 ASVMVYDDSNKKWVPAGGGSQGF--------SRVQIYHHPRNNTFRVVGRKL 52 (111)
T ss_pred EEeeEEcCCCCcEEcCCCCCCCc--------ceEEEEEcCCCCEEEEEEeec
Confidence 47899999999977554422211 355677788889999998753
No 82
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=81.88 E-value=41 Score=35.08 Aligned_cols=31 Identities=16% Similarity=0.051 Sum_probs=24.4
Q ss_pred cceEEECceEEEEeecccccccccEEEEEECCC--ceeeE
Q 045675 207 QDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNL--ELFWR 244 (382)
Q Consensus 207 ~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~--~~~~~ 244 (382)
..++.++|.+|.-+..+ .+.++|..| +.|+.
T Consensus 188 ~TPlvvgg~lYv~t~~~-------~V~ALDa~TGk~lW~~ 220 (764)
T TIGR03074 188 ATPLKVGDTLYLCTPHN-------KVIALDAATGKEKWKF 220 (764)
T ss_pred cCCEEECCEEEEECCCC-------eEEEEECCCCcEEEEE
Confidence 47888999999976554 899999975 56664
No 83
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=81.79 E-value=2.2 Score=26.87 Aligned_cols=25 Identities=12% Similarity=0.112 Sum_probs=19.9
Q ss_pred CCEEEEEECCCCCeeeecCCCCeeE
Q 045675 178 DAIAEVYSTSTGKWKEVAAGTGSCV 202 (382)
Q Consensus 178 ~~~~~vyss~t~~W~~~~~~~~~~~ 202 (382)
...+.+|+..+++|++++..|.++.
T Consensus 18 ~nd~~~~~~~~~~W~~~~~~P~~R~ 42 (49)
T PF13415_consen 18 LNDVWVFDLDTNTWTRIGDLPPPRS 42 (49)
T ss_pred ecCEEEEECCCCEEEECCCCCCCcc
Confidence 3589999999999999966655443
No 84
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=80.91 E-value=4.6 Score=30.25 Aligned_cols=41 Identities=12% Similarity=0.275 Sum_probs=31.0
Q ss_pred ceeEEEEccccc-ceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEE
Q 045675 120 GMAFVLWNPATN-EFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIV 171 (382)
Q Consensus 120 ~~~~~V~NP~T~-~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~ 171 (382)
...++++||.|+ .|...-+.. ..+.+-+|+..+.|+||.+-
T Consensus 10 rA~V~~yd~~tKk~WvPs~~~~-----------~~V~~y~~~~~ntfRIi~~~ 51 (111)
T cd01206 10 RAHVFQIDPKTKKNWIPASKHA-----------VTVSYFYDSTRNVYRIISVG 51 (111)
T ss_pred eeEEEEECCCCcceeEeCCCCc-----------eeEEEEecCCCcEEEEEEec
Confidence 457999999986 787443211 46678889999999999964
No 85
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=80.36 E-value=2.6 Score=26.43 Aligned_cols=35 Identities=6% Similarity=0.023 Sum_probs=17.9
Q ss_pred CeEEEEEEeecCCCCCEEEEEECCCCCeeeecCCC
Q 045675 164 DYVLVRIVNFQARYDAIAEVYSTSTGKWKEVAAGT 198 (382)
Q Consensus 164 ~ykvv~~~~~~~~~~~~~~vyss~t~~W~~~~~~~ 198 (382)
...|++...........+.+|+..+++|++++.+|
T Consensus 14 ~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 14 SIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp EEEEE--EEE-TEE---EEEEETTTTEEEE--SS-
T ss_pred eEEEECCCCCCCcccCCEEEEECCCCEEEECCCCC
Confidence 34444444322224458999999999999986553
No 86
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=79.80 E-value=40 Score=33.51 Aligned_cols=112 Identities=18% Similarity=0.213 Sum_probs=62.5
Q ss_pred cceEEECceEEEEeecccccccccEEEEEECCC--ceeeEe-CCCCCCCC------CeeeEEEeCCeEEEEEecCCCccC
Q 045675 207 QDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNL--ELFWRT-AMPELPTD------CYVKALSYDQSLALAVYPGLGFRS 277 (382)
Q Consensus 207 ~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~--~~~~~i-~~P~~~~~------~~~~l~~~~g~L~~~~~~~~~~~~ 277 (382)
..++..+|.+|.....+ .|.++|..| +.|+.- ..|..... ....++..+|++++....
T Consensus 63 stPvv~~g~vyv~s~~g-------~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~d------ 129 (527)
T TIGR03075 63 SQPLVVDGVMYVTTSYS-------RVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLD------ 129 (527)
T ss_pred cCCEEECCEEEEECCCC-------cEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCC------
Confidence 36788899999876554 799999976 456543 33322110 011234567777764443
Q ss_pred CCCCeEEEEEECCCCC---eeEEEE-eecC-Cc-ccceEEeeCCcEEEEEc-------CeEEEEeCCCCcEEEE
Q 045675 278 RLSNRFELWVMNEGKG---WTRTFN-TAFE-RI-AWPVGSFRDSKIIMKSV-------DQFFLFNPKTKRNFIL 338 (382)
Q Consensus 278 ~~~~~~~iW~l~~~~~---W~~~~~-i~~~-~~-~~~~~~~~~g~l~l~~~-------~~~~~yd~~t~~~~~v 338 (382)
. .+..++-..| |..... .... .+ ..|+.. ++.||+... ..++.||.+|++...-
T Consensus 130 ---g--~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~--~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~ 196 (527)
T TIGR03075 130 ---A--RLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVV--KGKVITGISGGEFGVRGYVTAYDAKTGKLVWR 196 (527)
T ss_pred ---C--EEEEEECCCCCEEeecccccccccccccCCcEEE--CCEEEEeecccccCCCcEEEEEECCCCceeEe
Confidence 1 4556654434 875431 1100 11 234332 455666542 3899999999985543
No 87
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=79.54 E-value=4.9 Score=25.20 Aligned_cols=44 Identities=18% Similarity=0.208 Sum_probs=30.6
Q ss_pred eeeEEEeCCeEEEEEecCCCccCCCCCeEEEEEECCCCC-eeEEEEe
Q 045675 255 YVKALSYDQSLALAVYPGLGFRSRLSNRFELWVMNEGKG-WTRTFNT 300 (382)
Q Consensus 255 ~~~l~~~~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~-W~~~~~i 300 (382)
....++.+++|++++.. .........-.+|.++.... |.++..+
T Consensus 4 ~hs~~~~~~kiyv~GG~--~~~~~~~~~~~v~~~d~~t~~W~~~~~~ 48 (49)
T PF07646_consen 4 GHSAVVLDGKIYVFGGY--GTDNGGSSSNDVWVFDTETNQWTELSPM 48 (49)
T ss_pred ceEEEEECCEEEEECCc--ccCCCCcccceeEEEECCCCEEeecCCC
Confidence 34567889999999987 22223466778888887644 9987543
No 88
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=78.13 E-value=56 Score=29.96 Aligned_cols=144 Identities=10% Similarity=0.024 Sum_probs=69.3
Q ss_pred CEEEEEECC-CCCeeeecCCCCeeEEeCCcceEEECceEEEEeecccccccccEEEEEECCCc-ee-eEeC-CCCCCCCC
Q 045675 179 AIAEVYSTS-TGKWKEVAAGTGSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLE-LF-WRTA-MPELPTDC 254 (382)
Q Consensus 179 ~~~~vyss~-t~~W~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~-~~-~~i~-~P~~~~~~ 254 (382)
..+.+|+.. ++++......+... . ...-+..-+|...+.+... ...|.+||+.+. .. ..+. .+... ..
T Consensus 57 ~~i~~~~~~~~g~l~~~~~~~~~~-~-p~~i~~~~~g~~l~v~~~~-----~~~v~v~~~~~~g~~~~~~~~~~~~~-~~ 128 (330)
T PRK11028 57 FRVLSYRIADDGALTFAAESPLPG-S-PTHISTDHQGRFLFSASYN-----ANCVSVSPLDKDGIPVAPIQIIEGLE-GC 128 (330)
T ss_pred CcEEEEEECCCCceEEeeeecCCC-C-ceEEEECCCCCEEEEEEcC-----CCeEEEEEECCCCCCCCceeeccCCC-cc
Confidence 466777765 45665444321100 0 0012223357655555443 247888988642 11 1121 11111 11
Q ss_pred eeeEEEeCCeEEEEEecCCCccCCCCCeEEEEEECCCCC-eeEE----EEeecCCcccceEEeeCCc-EEEEEc--CeEE
Q 045675 255 YVKALSYDQSLALAVYPGLGFRSRLSNRFELWVMNEGKG-WTRT----FNTAFERIAWPVGSFRDSK-IIMKSV--DQFF 326 (382)
Q Consensus 255 ~~~l~~~~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~-W~~~----~~i~~~~~~~~~~~~~~g~-l~l~~~--~~~~ 326 (382)
......-+|+..++... ....+.||.++.. + -... ..++...-.+-+.+..+|. +|+... +.+.
T Consensus 129 ~~~~~~p~g~~l~v~~~-------~~~~v~v~d~~~~-g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~ 200 (330)
T PRK11028 129 HSANIDPDNRTLWVPCL-------KEDRIRLFTLSDD-GHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVD 200 (330)
T ss_pred cEeEeCCCCCEEEEeeC-------CCCEEEEEEECCC-CcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEE
Confidence 11122336665544444 3788999999864 4 2211 1222222133356667777 455544 2888
Q ss_pred EEeCC--CCcEEEE
Q 045675 327 LFNPK--TKRNFIL 338 (382)
Q Consensus 327 ~yd~~--t~~~~~v 338 (382)
+||++ +++++.+
T Consensus 201 v~~~~~~~~~~~~~ 214 (330)
T PRK11028 201 VWQLKDPHGEIECV 214 (330)
T ss_pred EEEEeCCCCCEEEE
Confidence 88876 4555544
No 89
>PRK04792 tolB translocation protein TolB; Provisional
Probab=77.73 E-value=71 Score=30.99 Aligned_cols=188 Identities=9% Similarity=0.014 Sum_probs=95.3
Q ss_pred ceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEECCCCCeeeecCCCC
Q 045675 120 GMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYSTSTGKWKEVAAGTG 199 (382)
Q Consensus 120 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~ 199 (382)
...++++|..|++...+...+.. .....+.|.++.. ++.. . ......+.+++..++..+.+.....
T Consensus 241 ~~~L~~~dl~tg~~~~lt~~~g~----------~~~~~wSPDG~~L-a~~~-~--~~g~~~Iy~~dl~tg~~~~lt~~~~ 306 (448)
T PRK04792 241 KAEIFVQDIYTQVREKVTSFPGI----------NGAPRFSPDGKKL-ALVL-S--KDGQPEIYVVDIATKALTRITRHRA 306 (448)
T ss_pred CcEEEEEECCCCCeEEecCCCCC----------cCCeeECCCCCEE-EEEE-e--CCCCeEEEEEECCCCCeEECccCCC
Confidence 44789999999887766543321 1124455554332 2221 1 1123467778888887766544311
Q ss_pred eeEEeCCcceEEECce-EEEEeecccccccccEEEEEECCCceeeEeCCCCCCCCCeeeEEEeCCeEEEEEecCCCccCC
Q 045675 200 SCVIYGGQDAVAVKGV-LHWIANGIGVLVNEKFVVSYDMNLELFWRTAMPELPTDCYVKALSYDQSLALAVYPGLGFRSR 278 (382)
Q Consensus 200 ~~~~~~~~~~v~~~G~-lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~~~l~~~~g~L~~~~~~~~~~~~~ 278 (382)
. .......-+|. +++...... ...|..+|+.+.+.+.+....... ..... .-+|+..++... .
T Consensus 307 --~--~~~p~wSpDG~~I~f~s~~~g----~~~Iy~~dl~~g~~~~Lt~~g~~~-~~~~~-SpDG~~l~~~~~--~---- 370 (448)
T PRK04792 307 --I--DTEPSWHPDGKSLIFTSERGG----KPQIYRVNLASGKVSRLTFEGEQN-LGGSI-TPDGRSMIMVNR--T---- 370 (448)
T ss_pred --C--ccceEECCCCCEEEEEECCCC----CceEEEEECCCCCEEEEecCCCCC-cCeeE-CCCCCEEEEEEe--c----
Confidence 0 00122233553 555544332 347889999888887764221110 11111 235654433333 1
Q ss_pred CCCeEEEEEECCCCC-eeEEEEeecCCcccceEEeeCCc-EEEEEcC----eEEEEeCCCCcEEEEeee
Q 045675 279 LSNRFELWVMNEGKG-WTRTFNTAFERIAWPVGSFRDSK-IIMKSVD----QFFLFNPKTKRNFILPID 341 (382)
Q Consensus 279 ~~~~~~iW~l~~~~~-W~~~~~i~~~~~~~~~~~~~~g~-l~l~~~~----~~~~yd~~t~~~~~v~~~ 341 (382)
....+||.++-..+ ...+.. . ..-..| .+..+|. |++.... .++.+|.+.+..+++...
T Consensus 371 -~g~~~I~~~dl~~g~~~~lt~-~-~~d~~p-s~spdG~~I~~~~~~~g~~~l~~~~~~G~~~~~l~~~ 435 (448)
T PRK04792 371 -NGKFNIARQDLETGAMQVLTS-T-RLDESP-SVAPNGTMVIYSTTYQGKQVLAAVSIDGRFKARLPAG 435 (448)
T ss_pred -CCceEEEEEECCCCCeEEccC-C-CCCCCc-eECCCCCEEEEEEecCCceEEEEEECCCCceEECcCC
Confidence 44567888774434 322211 1 111334 4456676 5554433 578888876666666543
No 90
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=76.34 E-value=72 Score=30.34 Aligned_cols=114 Identities=13% Similarity=0.083 Sum_probs=71.6
Q ss_pred ceEEECceEEEEeecccccccccEEEEEECCCceeeEeCCCCCCCCCeeeEEEeCCeEEEEEecCCCccCCCCCeEEEEE
Q 045675 208 DAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRTAMPELPTDCYVKALSYDQSLALAVYPGLGFRSRLSNRFELWV 287 (382)
Q Consensus 208 ~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~~~l~~~~g~L~~~~~~~~~~~~~~~~~~~iW~ 287 (382)
..++=+|.++-.+..+ ..+-.||+.+.. -.-.+|..- .....+.-.++.-+++... . ...+.+|-
T Consensus 353 ~~fHpDgLifgtgt~d------~~vkiwdlks~~-~~a~Fpght-~~vk~i~FsENGY~Lat~a--d-----d~~V~lwD 417 (506)
T KOG0289|consen 353 AAFHPDGLIFGTGTPD------GVVKIWDLKSQT-NVAKFPGHT-GPVKAISFSENGYWLATAA--D-----DGSVKLWD 417 (506)
T ss_pred eeEcCCceEEeccCCC------ceEEEEEcCCcc-ccccCCCCC-CceeEEEeccCceEEEEEe--c-----CCeEEEEE
Confidence 3445577777766554 477789998876 333666532 1333444445666666666 2 55699999
Q ss_pred ECCCCCeeEEEEeecCCc--ccceEEeeCCcEEEEEc-C-eEEEEeCCCCcEEEEe
Q 045675 288 MNEGKGWTRTFNTAFERI--AWPVGSFRDSKIIMKSV-D-QFFLFNPKTKRNFILP 339 (382)
Q Consensus 288 l~~~~~W~~~~~i~~~~~--~~~~~~~~~g~l~l~~~-~-~~~~yd~~t~~~~~v~ 339 (382)
|.... ...++.++.. ...+.+...|..+.... + .++.|+.+++.|.++.
T Consensus 418 LRKl~---n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~ 470 (506)
T KOG0289|consen 418 LRKLK---NFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIK 470 (506)
T ss_pred ehhhc---ccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeee
Confidence 98762 3445554443 44556666676443334 3 8999999999999884
No 91
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=76.01 E-value=59 Score=29.15 Aligned_cols=217 Identities=15% Similarity=0.160 Sum_probs=114.6
Q ss_pred ccCceEEEeeCCCCceeEEEEcccccceeccCCCCCcccc----cc--ceeEEEEE---EEeeCCCCCeEEEEEEeecCC
Q 045675 106 SCNGLLCLDVSSAFGMAFVLWNPATNEFKGLPTPSLTESR----LK--TFWMVSLG---FGFNQDTNDYVLVRIVNFQAR 176 (382)
Q Consensus 106 s~~Gll~~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~----~~--~~~~~~~~---~g~d~~~~~ykvv~~~~~~~~ 176 (382)
+-+|-|-+.... ...+-=.||.|++....|-..-.+.. +. ..|+...+ .-+|+.+.+++=+-+-.+-..
T Consensus 70 apdG~VWft~qg--~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~dpkt~evt~f~lp~~~a~ 147 (353)
T COG4257 70 APDGAVWFTAQG--TGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGLAIGRLDPKTLEVTRFPLPLEHAD 147 (353)
T ss_pred CCCCceEEecCc--cccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcceeEEecCcccceEEeecccccCC
Confidence 447766655443 33444579999998887755432211 00 01111111 112333333222222111111
Q ss_pred CCCEEEEEECCCCCeeeecCC------CCe---eEE--e--CCcce--EEECceEEEEeecccccccccEEEEEECCCce
Q 045675 177 YDAIAEVYSTSTGKWKEVAAG------TGS---CVI--Y--GGQDA--VAVKGVLHWIANGIGVLVNEKFVVSYDMNLEL 241 (382)
Q Consensus 177 ~~~~~~vyss~t~~W~~~~~~------~~~---~~~--~--~~~~~--v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~ 241 (382)
.+.+..||+...+-|-..... +.. ..+ . +...+ +.-+|.+|+-...+ ..|...|+.+..
T Consensus 148 ~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG~gpyGi~atpdGsvwyaslag------naiaridp~~~~ 221 (353)
T COG4257 148 ANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQGGGPYGICATPDGSVWYASLAG------NAIARIDPFAGH 221 (353)
T ss_pred CcccceeeCCCccEEEeeccccceecCcccCceeeeccCCCCCCcceEECCCCcEEEEeccc------cceEEcccccCC
Confidence 245788899999999654432 100 000 0 11233 34479998876554 589999999998
Q ss_pred eeEeCCCCCCC-CCeeeEEEeCCeEEEEEecCCCccCCCCCeEEEEEECCCCC-eeEEEEeecCC-cccceEEeeCCcEE
Q 045675 242 FWRTAMPELPT-DCYVKALSYDQSLALAVYPGLGFRSRLSNRFELWVMNEGKG-WTRTFNTAFER-IAWPVGSFRDSKII 318 (382)
Q Consensus 242 ~~~i~~P~~~~-~~~~~l~~~~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~-W~~~~~i~~~~-~~~~~~~~~~g~l~ 318 (382)
-.+++.|.... +....-....|++.+-.-. ... +...+-... |.. +.+|-.. .-..+.+...|.|.
T Consensus 222 aev~p~P~~~~~gsRriwsdpig~~wittwg--------~g~--l~rfdPs~~sW~e-ypLPgs~arpys~rVD~~grVW 290 (353)
T COG4257 222 AEVVPQPNALKAGSRRIWSDPIGRAWITTWG--------TGS--LHRFDPSVTSWIE-YPLPGSKARPYSMRVDRHGRVW 290 (353)
T ss_pred cceecCCCcccccccccccCccCcEEEeccC--------Cce--eeEeCccccccee-eeCCCCCCCcceeeeccCCcEE
Confidence 88888888732 2222222334555443222 222 223333222 763 4454322 23345666666677
Q ss_pred EEEcC--eEEEEeCCCCcEEEEeee
Q 045675 319 MKSVD--QFFLFNPKTKRNFILPID 341 (382)
Q Consensus 319 l~~~~--~~~~yd~~t~~~~~v~~~ 341 (382)
+..-+ .+..+|+++.++..+.+.
T Consensus 291 ~sea~agai~rfdpeta~ftv~p~p 315 (353)
T COG4257 291 LSEADAGAIGRFDPETARFTVLPIP 315 (353)
T ss_pred eeccccCceeecCcccceEEEecCC
Confidence 75544 899999999999998765
No 92
>PRK05137 tolB translocation protein TolB; Provisional
Probab=75.97 E-value=77 Score=30.51 Aligned_cols=186 Identities=9% Similarity=0.036 Sum_probs=90.9
Q ss_pred ceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEECCCCCeeeecCCCC
Q 045675 120 GMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYSTSTGKWKEVAAGTG 199 (382)
Q Consensus 120 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~ 199 (382)
...++++|+.|++...|...+.. .....+.|.++. -++... ......+.+++..++.-+.+.....
T Consensus 225 ~~~i~~~dl~~g~~~~l~~~~g~----------~~~~~~SPDG~~-la~~~~---~~g~~~Iy~~d~~~~~~~~Lt~~~~ 290 (435)
T PRK05137 225 RPRVYLLDLETGQRELVGNFPGM----------TFAPRFSPDGRK-VVMSLS---QGGNTDIYTMDLRSGTTTRLTDSPA 290 (435)
T ss_pred CCEEEEEECCCCcEEEeecCCCc----------ccCcEECCCCCE-EEEEEe---cCCCceEEEEECCCCceEEccCCCC
Confidence 45799999999988776543321 113344554332 222221 1123466777887776655443211
Q ss_pred eeEEeCCcceEEECce-EEEEeecccccccccEEEEEECCCceeeEeCCCCCCCCCeeeEEEeCCe-EEEEEecCCCccC
Q 045675 200 SCVIYGGQDAVAVKGV-LHWIANGIGVLVNEKFVVSYDMNLELFWRTAMPELPTDCYVKALSYDQS-LALAVYPGLGFRS 277 (382)
Q Consensus 200 ~~~~~~~~~~v~~~G~-lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~~~l~~~~g~-L~~~~~~~~~~~~ 277 (382)
. .......-+|. +++.....+ ...|..+|+.+...+.+...... ...... .-+|+ |.+....
T Consensus 291 ~----~~~~~~spDG~~i~f~s~~~g----~~~Iy~~d~~g~~~~~lt~~~~~-~~~~~~-SpdG~~ia~~~~~------ 354 (435)
T PRK05137 291 I----DTSPSYSPDGSQIVFESDRSG----SPQLYVMNADGSNPRRISFGGGR-YSTPVW-SPRGDLIAFTKQG------ 354 (435)
T ss_pred c----cCceeEcCCCCEEEEEECCCC----CCeEEEEECCCCCeEEeecCCCc-ccCeEE-CCCCCEEEEEEcC------
Confidence 0 00122233553 444443321 24688889888777766322111 011222 23554 4444433
Q ss_pred CCCCeEEEEEECCCCCeeEEEEeecCCcccceEEeeCCc-EEEEEc-------CeEEEEeCCCCcEEEEe
Q 045675 278 RLSNRFELWVMNEGKGWTRTFNTAFERIAWPVGSFRDSK-IIMKSV-------DQFFLFNPKTKRNFILP 339 (382)
Q Consensus 278 ~~~~~~~iW~l~~~~~W~~~~~i~~~~~~~~~~~~~~g~-l~l~~~-------~~~~~yd~~t~~~~~v~ 339 (382)
.....||.++-..+..+..+-. .......+..+|+ |++... ..++.+|+.++..+.+.
T Consensus 355 --~~~~~i~~~d~~~~~~~~lt~~--~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~ 420 (435)
T PRK05137 355 --GGQFSIGVMKPDGSGERILTSG--FLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREVP 420 (435)
T ss_pred --CCceEEEEEECCCCceEeccCC--CCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceEEcc
Confidence 2234555555321222221111 1122334456776 555443 15889999888777665
No 93
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=75.31 E-value=73 Score=29.87 Aligned_cols=135 Identities=16% Similarity=0.238 Sum_probs=72.4
Q ss_pred CEEEEEECCCC--CeeeecCCCCeeEEeCCcceEEECceEEEEeecccccccccEEEEEECCCc--eeeE-eCCCCCCCC
Q 045675 179 AIAEVYSTSTG--KWKEVAAGTGSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLE--LFWR-TAMPELPTD 253 (382)
Q Consensus 179 ~~~~vyss~t~--~W~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~--~~~~-i~~P~~~~~ 253 (382)
..+..++..++ .|+.....+..... ....++..+|.+|.-...+ .+.++|+.++ .|+. +..|.....
T Consensus 155 g~l~a~d~~tG~~~W~~~~~~~~~~~~-~~~sp~~~~~~v~~~~~~g-------~v~ald~~tG~~~W~~~~~~~~g~~~ 226 (377)
T TIGR03300 155 GRLTALDAATGERLWTYSRVTPALTLR-GSASPVIADGGVLVGFAGG-------KLVALDLQTGQPLWEQRVALPKGRTE 226 (377)
T ss_pred CeEEEEEcCCCceeeEEccCCCceeec-CCCCCEEECCEEEEECCCC-------EEEEEEccCCCEeeeeccccCCCCCc
Confidence 36777887766 68754333221111 1135667788777644333 8999999765 4542 222321110
Q ss_pred ------CeeeEEEeCCeEEEEEecCCCccCCCCCeEEEEEECCCCC-eeEEEEeecCCcccceEEeeCCcEEEEEcC-eE
Q 045675 254 ------CYVKALSYDQSLALAVYPGLGFRSRLSNRFELWVMNEGKG-WTRTFNTAFERIAWPVGSFRDSKIIMKSVD-QF 325 (382)
Q Consensus 254 ------~~~~l~~~~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~-W~~~~~i~~~~~~~~~~~~~~g~l~l~~~~-~~ 325 (382)
........+|.+++.... ..+..+.++..+. |.... .....|. + .++.||+...+ .+
T Consensus 227 ~~~~~~~~~~p~~~~~~vy~~~~~---------g~l~a~d~~tG~~~W~~~~----~~~~~p~-~-~~~~vyv~~~~G~l 291 (377)
T TIGR03300 227 LERLVDVDGDPVVDGGQVYAVSYQ---------GRVAALDLRSGRVLWKRDA----SSYQGPA-V-DDNRLYVTDADGVV 291 (377)
T ss_pred hhhhhccCCccEEECCEEEEEEcC---------CEEEEEECCCCcEEEeecc----CCccCce-E-eCCEEEEECCCCeE
Confidence 011223456766664432 3455555554422 86542 1222232 2 35667777765 89
Q ss_pred EEEeCCCCcEE
Q 045675 326 FLFNPKTKRNF 336 (382)
Q Consensus 326 ~~yd~~t~~~~ 336 (382)
+++|.++++..
T Consensus 292 ~~~d~~tG~~~ 302 (377)
T TIGR03300 292 VALDRRSGSEL 302 (377)
T ss_pred EEEECCCCcEE
Confidence 99999988643
No 94
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=74.87 E-value=80 Score=30.17 Aligned_cols=198 Identities=14% Similarity=0.074 Sum_probs=101.6
Q ss_pred CeeeeccCceEEEeeCCCCceeEEEEcccccceecc-CCCCCccccccceeEEEEEEEeeCCCCC---------eEEEEE
Q 045675 101 PKIVGSCNGLLCLDVSSAFGMAFVLWNPATNEFKGL-PTPSLTESRLKTFWMVSLGFGFNQDTND---------YVLVRI 170 (382)
Q Consensus 101 ~~~~~s~~Gll~~~~~~~~~~~~~V~NP~T~~~~~L-P~~~~~~~~~~~~~~~~~~~g~d~~~~~---------ykvv~~ 170 (382)
..+..||+|-.++..+. ...+.||++-|++++.. +.... ...+++|-..+++ -||.-+
T Consensus 206 l~~avS~Dgkylatgg~--d~~v~Iw~~~t~ehv~~~~ghr~----------~V~~L~fr~gt~~lys~s~Drsvkvw~~ 273 (479)
T KOG0299|consen 206 LTLAVSSDGKYLATGGR--DRHVQIWDCDTLEHVKVFKGHRG----------AVSSLAFRKGTSELYSASADRSVKVWSI 273 (479)
T ss_pred EEEEEcCCCcEEEecCC--CceEEEecCcccchhhccccccc----------ceeeeeeecCccceeeeecCCceEEEeh
Confidence 45677899998888775 55677999999998876 32221 2334444322221 222221
Q ss_pred Eee---------cC--------CCCCEEEEEEC--CCCCeeeecCCC-CeeEEeCCcceEEECceEEEEeeccccccccc
Q 045675 171 VNF---------QA--------RYDAIAEVYST--STGKWKEVAAGT-GSCVIYGGQDAVAVKGVLHWIANGIGVLVNEK 230 (382)
Q Consensus 171 ~~~---------~~--------~~~~~~~vyss--~t~~W~~~~~~~-~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~ 230 (382)
-.. +. .....+.|+-. ...-|+..+... -....-+.-.+|.+=..-|++.+.+. .
T Consensus 274 ~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~~HfvsGSdn-----G 348 (479)
T KOG0299|consen 274 DQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFINDEHFVSGSDN-----G 348 (479)
T ss_pred hHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecccceeeccCC-----c
Confidence 000 00 00112223311 112465533321 11100011234444455566666552 2
Q ss_pred EEEEEECCCceeeEe-CCCCC-------CCC--CeeeEEEeCCeEEEEEecCCCccCCCCCeEEEEEECCCCC-eeEEEE
Q 045675 231 FVVSYDMNLELFWRT-AMPEL-------PTD--CYVKALSYDQSLALAVYPGLGFRSRLSNRFELWVMNEGKG-WTRTFN 299 (382)
Q Consensus 231 ~i~~fD~~~~~~~~i-~~P~~-------~~~--~~~~l~~~~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~-W~~~~~ 299 (382)
.|.-.++.+.+.-.+ ..+.. .+. +...|+++.|.=.++... ....+.+|...++.. =...+.
T Consensus 349 ~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS-------~~G~vrLW~i~~g~r~i~~l~~ 421 (479)
T KOG0299|consen 349 SIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGS-------WSGCVRLWKIEDGLRAINLLYS 421 (479)
T ss_pred eEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecC-------CCCceEEEEecCCccccceeee
Confidence 455445544433322 22221 111 344566666664444444 378999999998744 566677
Q ss_pred eecCCcccceEEeeCCc-EEEEEc
Q 045675 300 TAFERIAWPVGSFRDSK-IIMKSV 322 (382)
Q Consensus 300 i~~~~~~~~~~~~~~g~-l~l~~~ 322 (382)
+++..++..+++..+|. |+....
T Consensus 422 ls~~GfVNsl~f~~sgk~ivagiG 445 (479)
T KOG0299|consen 422 LSLVGFVNSLAFSNSGKRIVAGIG 445 (479)
T ss_pred cccccEEEEEEEccCCCEEEEecc
Confidence 77777777888777777 555544
No 95
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=73.91 E-value=65 Score=28.69 Aligned_cols=106 Identities=13% Similarity=0.114 Sum_probs=66.0
Q ss_pred ECceEEEEeecccccccccEEEEEECCCceee-EeCCCCCCCCCeeeEEEeCCeEEEEEecCCCccCCCCCeEEEEEECC
Q 045675 212 VKGVLHWIANGIGVLVNEKFVVSYDMNLELFW-RTAMPELPTDCYVKALSYDQSLALAVYPGLGFRSRLSNRFELWVMNE 290 (382)
Q Consensus 212 ~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~-~i~~P~~~~~~~~~l~~~~g~L~~~~~~~~~~~~~~~~~~~iW~l~~ 290 (382)
.+|.+|==++..+ .-.|-.+|+.+++.. ..++|... ..-.++..+++|+...-. ....-+|-.+.
T Consensus 54 ~~g~LyESTG~yG----~S~l~~~d~~tg~~~~~~~l~~~~--FgEGit~~~d~l~qLTWk--------~~~~f~yd~~t 119 (264)
T PF05096_consen 54 DDGTLYESTGLYG----QSSLRKVDLETGKVLQSVPLPPRY--FGEGITILGDKLYQLTWK--------EGTGFVYDPNT 119 (264)
T ss_dssp ETTEEEEEECSTT----EEEEEEEETTTSSEEEEEE-TTT----EEEEEEETTEEEEEESS--------SSEEEEEETTT
T ss_pred CCCEEEEeCCCCC----cEEEEEEECCCCcEEEEEECCccc--cceeEEEECCEEEEEEec--------CCeEEEEcccc
Confidence 4677777666553 348999999998774 56888865 455677889999998886 55566665554
Q ss_pred CCCeeEEEEeecCCcccceEEeeCCc-EEEEEcC-eEEEEeCCCCcEE
Q 045675 291 GKGWTRTFNTAFERIAWPVGSFRDSK-IIMKSVD-QFFLFNPKTKRNF 336 (382)
Q Consensus 291 ~~~W~~~~~i~~~~~~~~~~~~~~g~-l~l~~~~-~~~~yd~~t~~~~ 336 (382)
..++.+++++.-. -++..+|+ |++..+. +++..|+++-+..
T Consensus 120 ---l~~~~~~~y~~EG--WGLt~dg~~Li~SDGS~~L~~~dP~~f~~~ 162 (264)
T PF05096_consen 120 ---LKKIGTFPYPGEG--WGLTSDGKRLIMSDGSSRLYFLDPETFKEV 162 (264)
T ss_dssp ---TEEEEEEE-SSS----EEEECSSCEEEE-SSSEEEEE-TTT-SEE
T ss_pred ---ceEEEEEecCCcc--eEEEcCCCEEEEECCccceEEECCcccceE
Confidence 3555556554323 33334555 6666655 9999999876533
No 96
>PRK00178 tolB translocation protein TolB; Provisional
Probab=73.71 E-value=87 Score=30.02 Aligned_cols=186 Identities=11% Similarity=0.055 Sum_probs=92.9
Q ss_pred ceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEECCCCCeeeecCCCC
Q 045675 120 GMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYSTSTGKWKEVAAGTG 199 (382)
Q Consensus 120 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~ 199 (382)
...++++|..|++...|...+.. .....+.|.+ ++-++.... .....+.+++..++..+.+.....
T Consensus 222 ~~~l~~~~l~~g~~~~l~~~~g~----------~~~~~~SpDG-~~la~~~~~---~g~~~Iy~~d~~~~~~~~lt~~~~ 287 (430)
T PRK00178 222 RPRIFVQNLDTGRREQITNFEGL----------NGAPAWSPDG-SKLAFVLSK---DGNPEIYVMDLASRQLSRVTNHPA 287 (430)
T ss_pred CCEEEEEECCCCCEEEccCCCCC----------cCCeEECCCC-CEEEEEEcc---CCCceEEEEECCCCCeEEcccCCC
Confidence 34688899998887777644321 1123445543 222222211 123477888888887766543211
Q ss_pred eeEEeCCcceEEECc-eEEEEeecccccccccEEEEEECCCceeeEeCCCCCCCCCeeeEEEeCCe-EEEEEecCCCccC
Q 045675 200 SCVIYGGQDAVAVKG-VLHWIANGIGVLVNEKFVVSYDMNLELFWRTAMPELPTDCYVKALSYDQS-LALAVYPGLGFRS 277 (382)
Q Consensus 200 ~~~~~~~~~~v~~~G-~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~~~l~~~~g~-L~~~~~~~~~~~~ 277 (382)
. .......-+| .+++.....+ ...|..+|+.+.+.+.+...... ...... .-+|+ |++....
T Consensus 288 ~----~~~~~~spDg~~i~f~s~~~g----~~~iy~~d~~~g~~~~lt~~~~~-~~~~~~-Spdg~~i~~~~~~------ 351 (430)
T PRK00178 288 I----DTEPFWGKDGRTLYFTSDRGG----KPQIYKVNVNGGRAERVTFVGNY-NARPRL-SADGKTLVMVHRQ------ 351 (430)
T ss_pred C----cCCeEECCCCCEEEEEECCCC----CceEEEEECCCCCEEEeecCCCC-ccceEE-CCCCCEEEEEEcc------
Confidence 0 0012222355 4666554432 24788889988877766432211 011122 22454 4444332
Q ss_pred CCCCeEEEEEECCCCC-eeEEEEeecCCcccceEEeeCCc-EEEEEcC----eEEEEeCCCCcEEEEee
Q 045675 278 RLSNRFELWVMNEGKG-WTRTFNTAFERIAWPVGSFRDSK-IIMKSVD----QFFLFNPKTKRNFILPI 340 (382)
Q Consensus 278 ~~~~~~~iW~l~~~~~-W~~~~~i~~~~~~~~~~~~~~g~-l~l~~~~----~~~~yd~~t~~~~~v~~ 340 (382)
.....||.++-..+ ...+..- ..-..| .+..+|. |++.... .++..+...+..+.+..
T Consensus 352 --~~~~~l~~~dl~tg~~~~lt~~--~~~~~p-~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~~~l~~ 415 (430)
T PRK00178 352 --DGNFHVAAQDLQRGSVRILTDT--SLDESP-SVAPNGTMLIYATRQQGRGVLMLVSINGRVRLPLPT 415 (430)
T ss_pred --CCceEEEEEECCCCCEEEccCC--CCCCCc-eECCCCCEEEEEEecCCceEEEEEECCCCceEECcC
Confidence 22445666653323 3332211 111334 4456777 5454432 68888887766656543
No 97
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=73.09 E-value=71 Score=28.77 Aligned_cols=178 Identities=13% Similarity=0.151 Sum_probs=92.8
Q ss_pred ceeEEEEccccccee-ccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEECCCCCee---eec
Q 045675 120 GMAFVLWNPATNEFK-GLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYSTSTGKWK---EVA 195 (382)
Q Consensus 120 ~~~~~V~NP~T~~~~-~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vyss~t~~W~---~~~ 195 (382)
+..+.|||-.|.... .+|.+.. | ....+|.|++ .|..-+.. +..+-||+..+..=+ .+.
T Consensus 76 DGklIvWDs~TtnK~haipl~s~--------W--VMtCA~sPSg-~~VAcGGL------dN~Csiy~ls~~d~~g~~~v~ 138 (343)
T KOG0286|consen 76 DGKLIVWDSFTTNKVHAIPLPSS--------W--VMTCAYSPSG-NFVACGGL------DNKCSIYPLSTRDAEGNVRVS 138 (343)
T ss_pred CCeEEEEEcccccceeEEecCce--------e--EEEEEECCCC-CeEEecCc------CceeEEEecccccccccceee
Confidence 457889999776544 4554432 2 3345677754 34433332 358999998754111 111
Q ss_pred CC-CCe-eEEeCCcceEEECceEEEEeecccccccccEEEEEECCCceeeEe-CCCCCCCCCeeeEEEeCCeEEEEEecC
Q 045675 196 AG-TGS-CVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRT-AMPELPTDCYVKALSYDQSLALAVYPG 272 (382)
Q Consensus 196 ~~-~~~-~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P~~~~~~~~~l~~~~g~L~~~~~~~ 272 (382)
.. +.+ .+. ++.-+++ --|-+++.+ +....-.|+++.+-... .--... -....|...++..++-+..
T Consensus 139 r~l~gHtgyl---ScC~f~d-D~~ilT~SG-----D~TCalWDie~g~~~~~f~GH~gD-V~slsl~p~~~ntFvSg~c- 207 (343)
T KOG0286|consen 139 RELAGHTGYL---SCCRFLD-DNHILTGSG-----DMTCALWDIETGQQTQVFHGHTGD-VMSLSLSPSDGNTFVSGGC- 207 (343)
T ss_pred eeecCcccee---EEEEEcC-CCceEecCC-----CceEEEEEcccceEEEEecCCccc-EEEEecCCCCCCeEEeccc-
Confidence 11 222 222 3555666 455555554 22344467766544322 211000 0112222335666666554
Q ss_pred CCccCCCCCeEEEEEECCCCCeeEEEEeecCC-cccceEEeeCCcEEEEEcC--eEEEEeCCCCcE
Q 045675 273 LGFRSRLSNRFELWVMNEGKGWTRTFNTAFER-IAWPVGSFRDSKIIMKSVD--QFFLFNPKTKRN 335 (382)
Q Consensus 273 ~~~~~~~~~~~~iW~l~~~~~W~~~~~i~~~~-~~~~~~~~~~g~l~l~~~~--~~~~yd~~t~~~ 335 (382)
...-.+|-+.+. . -+...+-.. -+..+.++++|.-|....+ ..-.||++..+-
T Consensus 208 -------D~~aklWD~R~~-~--c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~ 263 (343)
T KOG0286|consen 208 -------DKSAKLWDVRSG-Q--CVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQE 263 (343)
T ss_pred -------ccceeeeeccCc-c--eeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcE
Confidence 566788888876 2 222222111 1566778888875555443 777899988753
No 98
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=71.27 E-value=70 Score=27.93 Aligned_cols=181 Identities=15% Similarity=0.241 Sum_probs=92.2
Q ss_pred CceEEEeeCCCCceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEECC
Q 045675 108 NGLLCLDVSSAFGMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYSTS 187 (382)
Q Consensus 108 ~Gll~~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vyss~ 187 (382)
+|=-|+..+. ++.+-+|||..+....-=. .+.. +. ......+|.+ |+. ..+.+..+++++..
T Consensus 28 dGnY~ltcGs--drtvrLWNp~rg~liktYs---ghG~--EV--lD~~~s~Dns----kf~-----s~GgDk~v~vwDV~ 89 (307)
T KOG0316|consen 28 DGNYCLTCGS--DRTVRLWNPLRGALIKTYS---GHGH--EV--LDAALSSDNS----KFA-----SCGGDKAVQVWDVN 89 (307)
T ss_pred CCCEEEEcCC--CceEEeecccccceeeeec---CCCc--ee--eecccccccc----ccc-----cCCCCceEEEEEcc
Confidence 4555665554 6789999999886542111 1110 11 2223333332 111 12234588999998
Q ss_pred CC----CeeeecCCCCeeEEeCCcceEEECceEEEEeecccccccccEEEEEECCCceeeEeCCCCCCCCCeeeEEEeCC
Q 045675 188 TG----KWKEVAAGTGSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRTAMPELPTDCYVKALSYDQ 263 (382)
Q Consensus 188 t~----~W~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~~~l~~~~g 263 (382)
|+ +||.....-....+ ....+|.+.|.+ +..+-++|..+..+..++.-....+. ..-....+
T Consensus 90 TGkv~Rr~rgH~aqVNtV~f-NeesSVv~Sgsf------------D~s~r~wDCRS~s~ePiQildea~D~-V~Si~v~~ 155 (307)
T KOG0316|consen 90 TGKVDRRFRGHLAQVNTVRF-NEESSVVASGSF------------DSSVRLWDCRSRSFEPIQILDEAKDG-VSSIDVAE 155 (307)
T ss_pred cCeeeeecccccceeeEEEe-cCcceEEEeccc------------cceeEEEEcccCCCCccchhhhhcCc-eeEEEecc
Confidence 87 46654443221112 223555555433 34888999999998888655544322 22223345
Q ss_pred eEEEEEecCCCccCCCCCeEEEEEECCCCCeeEEEEeecCCc---ccceEEeeCCcEEEEE-cC-eEEEEeCCCCcE
Q 045675 264 SLALAVYPGLGFRSRLSNRFELWVMNEGKGWTRTFNTAFERI---AWPVGSFRDSKIIMKS-VD-QFFLFNPKTKRN 335 (382)
Q Consensus 264 ~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~W~~~~~i~~~~~---~~~~~~~~~g~l~l~~-~~-~~~~yd~~t~~~ 335 (382)
...+.+.. ..+++.+-+... . +..+.+ +..+.+.++|.-.++. -+ .+-..|.+|+++
T Consensus 156 heIvaGS~--------DGtvRtydiR~G-~------l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGkl 217 (307)
T KOG0316|consen 156 HEIVAGSV--------DGTVRTYDIRKG-T------LSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKL 217 (307)
T ss_pred cEEEeecc--------CCcEEEEEeecc-e------eehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHH
Confidence 55555444 456666666554 1 111112 3334555666533322 23 566666666653
No 99
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=70.76 E-value=7.3 Score=37.48 Aligned_cols=145 Identities=14% Similarity=0.115 Sum_probs=86.1
Q ss_pred CCCeeeecCCC--------CeeEEeCCcceEEECc--eEEEEeecccccccccEEEEEECCCceeeEeC----CCCCCCC
Q 045675 188 TGKWKEVAAGT--------GSCVIYGGQDAVAVKG--VLHWIANGIGVLVNEKFVVSYDMNLELFWRTA----MPELPTD 253 (382)
Q Consensus 188 t~~W~~~~~~~--------~~~~~~~~~~~v~~~G--~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~----~P~~~~~ 253 (382)
+-.|.++.... .+... +++..|...| ++|-.++=++.. ...-..+|....+.|+.+. .|..+
T Consensus 238 ~~~W~~i~~~~~~~~~~~~~p~~R-gGHQMV~~~~~~CiYLYGGWdG~~-~l~DFW~Y~v~e~~W~~iN~~t~~PG~R-- 313 (723)
T KOG2437|consen 238 KPRWSQIIPKSTKGDGEDNRPGMR-GGHQMVIDVQTECVYLYGGWDGTQ-DLADFWAYSVKENQWTCINRDTEGPGAR-- 313 (723)
T ss_pred cccccccCchhhcccccccCcccc-CcceEEEeCCCcEEEEecCcccch-hHHHHHhhcCCcceeEEeecCCCCCcch--
Confidence 34787665441 12333 5578899888 999887755332 1224567888899999983 45443
Q ss_pred CeeeEE--EeCCeEEEEEecCCCccC---CCCCeEEEEEECCCCC-eeEEEEeecCCcccceEEe-------eCCcEEEE
Q 045675 254 CYVKAL--SYDQSLALAVYPGLGFRS---RLSNRFELWVMNEGKG-WTRTFNTAFERIAWPVGSF-------RDSKIIMK 320 (382)
Q Consensus 254 ~~~~l~--~~~g~L~~~~~~~~~~~~---~~~~~~~iW~l~~~~~-W~~~~~i~~~~~~~~~~~~-------~~g~l~l~ 320 (382)
...+++ +...+|++.+.. .+.+ ....+-.+|+++.... |..+- ++...-.+|-.+. .+.-++.+
T Consensus 314 sCHRMVid~S~~KLYLlG~Y--~~sS~r~~~s~RsDfW~FDi~~~~W~~ls-~dt~~dGGP~~vfDHqM~Vd~~k~~iyV 390 (723)
T KOG2437|consen 314 SCHRMVIDISRRKLYLLGRY--LDSSVRNSKSLRSDFWRFDIDTNTWMLLS-EDTAADGGPKLVFDHQMCVDSEKHMIYV 390 (723)
T ss_pred hhhhhhhhhhHhHHhhhhhc--cccccccccccccceEEEecCCceeEEec-ccccccCCcceeecceeeEecCcceEEE
Confidence 333333 445578887765 2211 2345678999998644 98552 4333223333332 22223433
Q ss_pred EcC-----------eEEEEeCCCCcEEEEe
Q 045675 321 SVD-----------QFFLFNPKTKRNFILP 339 (382)
Q Consensus 321 ~~~-----------~~~~yd~~t~~~~~v~ 339 (382)
.++ ++++||.....|+.+.
T Consensus 391 fGGr~~~~~e~~f~GLYaf~~~~~~w~~l~ 420 (723)
T KOG2437|consen 391 FGGRILTCNEPQFSGLYAFNCQCQTWKLLR 420 (723)
T ss_pred ecCeeccCCCccccceEEEecCCccHHHHH
Confidence 321 7999999999998763
No 100
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=69.19 E-value=9.2 Score=22.72 Aligned_cols=25 Identities=8% Similarity=-0.066 Sum_probs=18.1
Q ss_pred ceEEECceEEEEeecccccccccEEEEEECCC
Q 045675 208 DAVAVKGVLHWIANGIGVLVNEKFVVSYDMNL 239 (382)
Q Consensus 208 ~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~ 239 (382)
.+++.+|.+|..+..+ .+.+||.+|
T Consensus 16 ~~~v~~g~vyv~~~dg-------~l~ald~~t 40 (40)
T PF13570_consen 16 SPAVAGGRVYVGTGDG-------NLYALDAAT 40 (40)
T ss_dssp --EECTSEEEEE-TTS-------EEEEEETT-
T ss_pred CCEEECCEEEEEcCCC-------EEEEEeCCC
Confidence 5678899999988766 899999875
No 101
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=66.76 E-value=1.2e+02 Score=30.67 Aligned_cols=84 Identities=11% Similarity=0.208 Sum_probs=50.6
Q ss_pred cEEEEEECCCceeeEeCCCCCCCCCeeeEE-EeCCeEEEEEecCCCccCCCCCeEEEEEECCCCCeeEEEEeecCCc-cc
Q 045675 230 KFVVSYDMNLELFWRTAMPELPTDCYVKAL-SYDQSLALAVYPGLGFRSRLSNRFELWVMNEGKGWTRTFNTAFERI-AW 307 (382)
Q Consensus 230 ~~i~~fD~~~~~~~~i~~P~~~~~~~~~l~-~~~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~W~~~~~i~~~~~-~~ 307 (382)
..|.--|+..|...++.--.. ....+. ..++.+.+.++. ..+++||.-++. +..|.++.. ++
T Consensus 200 g~Ir~w~~~ge~l~~~~ghtn---~vYsis~~~~~~~Ivs~gE--------DrtlriW~~~e~-----~q~I~lPttsiW 263 (745)
T KOG0301|consen 200 GSIRLWDLDGEVLLEMHGHTN---FVYSISMALSDGLIVSTGE--------DRTLRIWKKDEC-----VQVITLPTTSIW 263 (745)
T ss_pred ceEEEEeccCceeeeeeccce---EEEEEEecCCCCeEEEecC--------CceEEEeecCce-----EEEEecCccceE
Confidence 467767776666665543222 122333 457777777765 789999998854 445544332 44
Q ss_pred ceEEeeCCcEEEEEcC-eEEEEe
Q 045675 308 PVGSFRDSKIIMKSVD-QFFLFN 329 (382)
Q Consensus 308 ~~~~~~~g~l~l~~~~-~~~~yd 329 (382)
...+..+|+|+..+.+ .+.+|-
T Consensus 264 sa~~L~NgDIvvg~SDG~VrVfT 286 (745)
T KOG0301|consen 264 SAKVLLNGDIVVGGSDGRVRVFT 286 (745)
T ss_pred EEEEeeCCCEEEeccCceEEEEE
Confidence 4555668888887776 444443
No 102
>PF12458 DUF3686: ATPase involved in DNA repair ; InterPro: IPR020958 This entry represents an N-terminal domain associated with ATPases and some uncharacterised proteins; it is approximately 450 amino acids in length and contains two conserved sequence motifs: DVF and SPNGED.
Probab=65.18 E-value=67 Score=30.55 Aligned_cols=142 Identities=16% Similarity=0.155 Sum_probs=73.9
Q ss_pred CceEEEeeCCCC--ceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEE
Q 045675 108 NGLLCLDVSSAF--GMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYS 185 (382)
Q Consensus 108 ~Gll~~~~~~~~--~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vys 185 (382)
+.||++.-..-. .-.|+|+|..|++...|..........++..-..+--||--.++++|++-.... ..
T Consensus 238 G~LILLrI~PY~E~~~RylVfN~~t~~V~R~Daig~acv~LPedqGiIFpgGYyLqtGe~K~Fd~~~~----~l------ 307 (448)
T PF12458_consen 238 GNLILLRIRPYREEEWRYLVFNTRTKKVVRLDAIGQACVRLPEDQGIIFPGGYYLQTGEYKTFDTDMD----GL------ 307 (448)
T ss_pred CcEEEEEeccCCCcceeEEEEecccceEEEecchhhhhhcCCccCceEccCceEeccCCceeecccCC----Cc------
Confidence 566666543211 237999999999999887665432211111001222344444555555442210 00
Q ss_pred CCCCCe-eeecCCCCeeEEeCCcceEEECc--eEEEEeecccccccccEEEEEECCCceeeEeCCCCCCCCCeeeEEEeC
Q 045675 186 TSTGKW-KEVAAGTGSCVIYGGQDAVAVKG--VLHWIANGIGVLVNEKFVVSYDMNLELFWRTAMPELPTDCYVKALSYD 262 (382)
Q Consensus 186 s~t~~W-~~~~~~~~~~~~~~~~~~v~~~G--~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~~~l~~~~ 262 (382)
.. |.+.+ =|| .+|..-.... ....++.||+-..+. ..|-.+ ...-.--|
T Consensus 308 ----~F~r~vrS---------------PNGEDvLYvF~~~~~---g~~~Ll~YN~I~k~v---~tPi~c---hG~alf~D 359 (448)
T PF12458_consen 308 ----EFERKVRS---------------PNGEDVLYVFYAREE---GRYLLLPYNLIRKEV---ATPIIC---HGYALFED 359 (448)
T ss_pred ----eEEEEecC---------------CCCceEEEEEEECCC---CcEEEEechhhhhhh---cCCeec---cceeEecC
Confidence 01 11111 122 4555544442 246888998877543 344433 23333458
Q ss_pred CeEEEEEecCCCccCCCCCeEEEEEEC
Q 045675 263 QSLALAVYPGLGFRSRLSNRFELWVMN 289 (382)
Q Consensus 263 g~L~~~~~~~~~~~~~~~~~~~iW~l~ 289 (382)
|+|+++... ..+......++||.--
T Consensus 360 G~l~~fra~--~~EptrvHp~QiWqTP 384 (448)
T PF12458_consen 360 GRLVYFRAE--GDEPTRVHPMQIWQTP 384 (448)
T ss_pred CEEEEEecC--CCCcceeccceeecCC
Confidence 999999876 3222234578999853
No 103
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=64.68 E-value=86 Score=29.62 Aligned_cols=104 Identities=13% Similarity=0.014 Sum_probs=50.6
Q ss_pred cccEEEEEECCCceeeEeCC-CCCCCCCeeeEEEeCCeEEEEEecCCCccCCCCCeEEEEEECCCCC--eeEEEEeecCC
Q 045675 228 NEKFVVSYDMNLELFWRTAM-PELPTDCYVKALSYDQSLALAVYPGLGFRSRLSNRFELWVMNEGKG--WTRTFNTAFER 304 (382)
Q Consensus 228 ~~~~i~~fD~~~~~~~~i~~-P~~~~~~~~~l~~~~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~--W~~~~~i~~~~ 304 (382)
..+.|+..|+.+.+...+.- ..=. ......-.+..|.++++.+-. ..-.-+||.++...+ |-.....+...
T Consensus 166 p~~~i~~idl~tG~~~~v~~~~~wl--gH~~fsP~dp~li~fCHEGpw----~~Vd~RiW~i~~dg~~~~~v~~~~~~e~ 239 (386)
T PF14583_consen 166 PHCRIFTIDLKTGERKVVFEDTDWL--GHVQFSPTDPTLIMFCHEGPW----DLVDQRIWTINTDGSNVKKVHRRMEGES 239 (386)
T ss_dssp --EEEEEEETTT--EEEEEEESS-E--EEEEEETTEEEEEEEEE-S-T----TTSS-SEEEEETTS---EESS---TTEE
T ss_pred CCceEEEEECCCCceeEEEecCccc--cCcccCCCCCCEEEEeccCCc----ceeceEEEEEEcCCCcceeeecCCCCcc
Confidence 35689999999988877632 1100 122222336778888776211 222347899987622 44333433322
Q ss_pred cccceEEeeCCc-EEEEEc--C----eEEEEeCCCCcEEEE
Q 045675 305 IAWPVGSFRDSK-IIMKSV--D----QFFLFNPKTKRNFIL 338 (382)
Q Consensus 305 ~~~~~~~~~~g~-l~l~~~--~----~~~~yd~~t~~~~~v 338 (382)
....... .+|. |++... . .+..||++|.+-+.+
T Consensus 240 ~gHEfw~-~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~ 279 (386)
T PF14583_consen 240 VGHEFWV-PDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRL 279 (386)
T ss_dssp EEEEEE--TTSS-EEEEEEETTT--EEEEEE-TTT--EEEE
T ss_pred ccccccc-CCCCEEEEEeecCCCCceEEEeeCCCCCCceEE
Confidence 2344444 3565 544332 1 788999999877665
No 104
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=63.61 E-value=1e+02 Score=27.05 Aligned_cols=115 Identities=12% Similarity=0.152 Sum_probs=61.9
Q ss_pred ECceEEEEeecccccccccEEEEEECCCcee-eEeCC--CCCCCC--CeeeEE-EeCCeEEEEEecCCCccCCCCCeEEE
Q 045675 212 VKGVLHWIANGIGVLVNEKFVVSYDMNLELF-WRTAM--PELPTD--CYVKAL-SYDQSLALAVYPGLGFRSRLSNRFEL 285 (382)
Q Consensus 212 ~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~-~~i~~--P~~~~~--~~~~l~-~~~g~L~~~~~~~~~~~~~~~~~~~i 285 (382)
-+|...++.... ...|..+|+.+.+. ..+.. +..... ....+. .-+|+..++... ....+.+
T Consensus 166 ~dg~~l~~~~~~-----~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~-------~~~~i~v 233 (300)
T TIGR03866 166 ADGKELWVSSEI-----GGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALG-------PANRVAV 233 (300)
T ss_pred CCCCEEEEEcCC-----CCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcC-------CCCeEEE
Confidence 356655554332 24788899987654 33322 111000 112232 335665444433 2557888
Q ss_pred EEECCCCCeeEEEEeecCCcccceEEeeCCcEEEEE-c--CeEEEEeCCCCcE-EEEeee
Q 045675 286 WVMNEGKGWTRTFNTAFERIAWPVGSFRDSKIIMKS-V--DQFFLFNPKTKRN-FILPID 341 (382)
Q Consensus 286 W~l~~~~~W~~~~~i~~~~~~~~~~~~~~g~l~l~~-~--~~~~~yd~~t~~~-~~v~~~ 341 (382)
|.++. |.....+........+.+..+|+.++.. . +.+.+||+++.+. +.+.+.
T Consensus 234 ~d~~~---~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~ 290 (300)
T TIGR03866 234 VDAKT---YEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG 290 (300)
T ss_pred EECCC---CcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc
Confidence 87643 4555444333334456666777754443 3 3899999999884 556553
No 105
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=63.38 E-value=50 Score=29.85 Aligned_cols=63 Identities=11% Similarity=0.166 Sum_probs=39.9
Q ss_pred CCeEEEEEECCCCC-eeEEEEeecCCcccceEEeeCCc-EEEEEcC-eEEEEeCCCCcEEEEeeeCC
Q 045675 280 SNRFELWVMNEGKG-WTRTFNTAFERIAWPVGSFRDSK-IIMKSVD-QFFLFNPKTKRNFILPIDSG 343 (382)
Q Consensus 280 ~~~~~iW~l~~~~~-W~~~~~i~~~~~~~~~~~~~~g~-l~l~~~~-~~~~yd~~t~~~~~v~~~~~ 343 (382)
...+++|+++.. | -+-+.-..+..-..-++..++|. |+....+ .+-.||+.+++...+..+..
T Consensus 49 D~tVR~wevq~~-g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~ 114 (347)
T KOG0647|consen 49 DGTVRIWEVQNS-GQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAAHDA 114 (347)
T ss_pred CCceEEEEEecC-CcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeeeeeeccc
Confidence 678999999986 4 22222122222222233345666 5555555 89999999999999977643
No 106
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=62.11 E-value=1.4e+02 Score=28.17 Aligned_cols=186 Identities=13% Similarity=0.100 Sum_probs=90.3
Q ss_pred eeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEECCCCCeeeecCCCCe
Q 045675 121 MAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYSTSTGKWKEVAAGTGS 200 (382)
Q Consensus 121 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~~ 200 (382)
..++++|..|++...+...... .....+.|.++.+.+. .. ......+.+++.+++..+.+......
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~~~----------~~~~~~spDg~~l~~~--~~--~~~~~~i~~~d~~~~~~~~l~~~~~~ 279 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFPGM----------NGAPAFSPDGSKLAVS--LS--KDGNPDIYVMDLDGKQLTRLTNGPGI 279 (417)
T ss_pred cEEEEEECCCCCEEEeecCCCC----------ccceEECCCCCEEEEE--EC--CCCCccEEEEECCCCCEEECCCCCCC
Confidence 4688889888876655433211 1134455544322221 11 11234677778887766555332110
Q ss_pred eEEeCCcceEEECc-eEEEEeecccccccccEEEEEECCCceeeEeCCCCCCCCCeeeEE-EeCCeEEEEEecCCCccCC
Q 045675 201 CVIYGGQDAVAVKG-VLHWIANGIGVLVNEKFVVSYDMNLELFWRTAMPELPTDCYVKAL-SYDQSLALAVYPGLGFRSR 278 (382)
Q Consensus 201 ~~~~~~~~~v~~~G-~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~~~l~-~~~g~L~~~~~~~~~~~~~ 278 (382)
.......-+| .+++...... ...|..+|+.+..+..+..... ...... .-+|+..++... .
T Consensus 280 ----~~~~~~s~dg~~l~~~s~~~g----~~~iy~~d~~~~~~~~l~~~~~---~~~~~~~spdg~~i~~~~~--~---- 342 (417)
T TIGR02800 280 ----DTEPSWSPDGKSIAFTSDRGG----SPQIYMMDADGGEVRRLTFRGG---YNASPSWSPDGDLIAFVHR--E---- 342 (417)
T ss_pred ----CCCEEECCCCCEEEEEECCCC----CceEEEEECCCCCEEEeecCCC---CccCeEECCCCCEEEEEEc--c----
Confidence 0011222355 4556554432 2378888998877766543221 111222 236665555554 1
Q ss_pred CCCeEEEEEECCCCCeeEEEEeecCCcccceEEeeCCc-EEEEEcC----eEEEEeCCCCcEEEEee
Q 045675 279 LSNRFELWVMNEGKGWTRTFNTAFERIAWPVGSFRDSK-IIMKSVD----QFFLFNPKTKRNFILPI 340 (382)
Q Consensus 279 ~~~~~~iW~l~~~~~W~~~~~i~~~~~~~~~~~~~~g~-l~l~~~~----~~~~yd~~t~~~~~v~~ 340 (382)
....+||.++-..+|.+...-. .....| .+..+|. |++...+ .++.++...+..+.+..
T Consensus 343 -~~~~~i~~~d~~~~~~~~l~~~-~~~~~p-~~spdg~~l~~~~~~~~~~~l~~~~~~g~~~~~~~~ 406 (417)
T TIGR02800 343 -GGGFNIAVMDLDGGGERVLTDT-GLDESP-SFAPNGRMILYATTRGGRGVLGLVSTDGRFRARLPL 406 (417)
T ss_pred -CCceEEEEEeCCCCCeEEccCC-CCCCCc-eECCCCCEEEEEEeCCCcEEEEEEECCCceeeECCC
Confidence 3455666666443443322111 111233 3444565 5555443 56666766655555543
No 107
>PRK05137 tolB translocation protein TolB; Provisional
Probab=61.57 E-value=1.6e+02 Score=28.39 Aligned_cols=185 Identities=14% Similarity=0.033 Sum_probs=91.6
Q ss_pred ceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEECCCCCeeeecCCCC
Q 045675 120 GMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYSTSTGKWKEVAAGTG 199 (382)
Q Consensus 120 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~ 199 (382)
...++++|.-++..+.|..... ......+.|.++ +++.... ......+.+++..++..+.+.....
T Consensus 181 ~~~l~~~d~dg~~~~~lt~~~~----------~v~~p~wSpDG~--~lay~s~--~~g~~~i~~~dl~~g~~~~l~~~~g 246 (435)
T PRK05137 181 IKRLAIMDQDGANVRYLTDGSS----------LVLTPRFSPNRQ--EITYMSY--ANGRPRVYLLDLETGQRELVGNFPG 246 (435)
T ss_pred ceEEEEECCCCCCcEEEecCCC----------CeEeeEECCCCC--EEEEEEe--cCCCCEEEEEECCCCcEEEeecCCC
Confidence 4578899987766555543322 122345555443 2222222 1223578888998887766543322
Q ss_pred eeEEeCCcceEEECce-EEEEeecccccccccEEEEEECCCceeeEeC-CCCCCCCCeeeEEEeCCeEEEEEecCCCccC
Q 045675 200 SCVIYGGQDAVAVKGV-LHWIANGIGVLVNEKFVVSYDMNLELFWRTA-MPELPTDCYVKALSYDQSLALAVYPGLGFRS 277 (382)
Q Consensus 200 ~~~~~~~~~~v~~~G~-lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~-~P~~~~~~~~~l~~~~g~L~~~~~~~~~~~~ 277 (382)
.. . .....-+|. +.+....+ ....|..+|+.+...+.+. -+... ..... .-+|+-.++... .
T Consensus 247 ~~-~---~~~~SPDG~~la~~~~~~----g~~~Iy~~d~~~~~~~~Lt~~~~~~--~~~~~-spDG~~i~f~s~--~--- 310 (435)
T PRK05137 247 MT-F---APRFSPDGRKVVMSLSQG----GNTDIYTMDLRSGTTTRLTDSPAID--TSPSY-SPDGSQIVFESD--R--- 310 (435)
T ss_pred cc-c---CcEECCCCCEEEEEEecC----CCceEEEEECCCCceEEccCCCCcc--CceeE-cCCCCEEEEEEC--C---
Confidence 11 0 133334564 44443332 1347888899887766552 22111 11111 225553333333 1
Q ss_pred CCCCeEEEEEECCCCC-eeEEEEeecCCcccceEEeeCCc-EEEEEcC----eEEEEeCCCCcEEEE
Q 045675 278 RLSNRFELWVMNEGKG-WTRTFNTAFERIAWPVGSFRDSK-IIMKSVD----QFFLFNPKTKRNFIL 338 (382)
Q Consensus 278 ~~~~~~~iW~l~~~~~-W~~~~~i~~~~~~~~~~~~~~g~-l~l~~~~----~~~~yd~~t~~~~~v 338 (382)
....+||.++-..+ ...+.. . ...........+|+ |++...+ .++.+|+.++..+.+
T Consensus 311 --~g~~~Iy~~d~~g~~~~~lt~-~-~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~l 373 (435)
T PRK05137 311 --SGSPQLYVMNADGSNPRRISF-G-GGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERIL 373 (435)
T ss_pred --CCCCeEEEEECCCCCeEEeec-C-CCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEec
Confidence 23346777764322 222211 1 11122233456666 5555432 789999988776655
No 108
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.56 E-value=1.4e+02 Score=27.82 Aligned_cols=139 Identities=17% Similarity=0.169 Sum_probs=73.6
Q ss_pred CEEEEEECCCCCeeeecCCCCeeEEeCCcceEEECce-EEEEeeccc-cc-ccccEEEEEECCCceeeEe-CCCCCCCCC
Q 045675 179 AIAEVYSTSTGKWKEVAAGTGSCVIYGGQDAVAVKGV-LHWIANGIG-VL-VNEKFVVSYDMNLELFWRT-AMPELPTDC 254 (382)
Q Consensus 179 ~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~v~~~G~-lywl~~~~~-~~-~~~~~i~~fD~~~~~~~~i-~~P~~~~~~ 254 (382)
..+-+|++.++.|+.....|-.-.. + .++...|. +-.+.+.-- .. .......-|.-...+|..+ .+|......
T Consensus 196 ~ev~sy~p~~n~W~~~G~~pf~~~a-G--sa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~~~~~~ 272 (381)
T COG3055 196 KEVLSYDPSTNQWRNLGENPFYGNA-G--SAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPAPIGSN 272 (381)
T ss_pred ccccccccccchhhhcCcCcccCcc-C--cceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCCCCCCC
Confidence 4788899999999998855211111 1 22333333 333322211 00 1223455566678899887 566544321
Q ss_pred e-----eeEEEeCCeEEEEEecCC--------------CccCCCCCeEEEEEECCCCCeeEEEEeecCCcccceEEeeCC
Q 045675 255 Y-----VKALSYDQSLALAVYPGL--------------GFRSRLSNRFELWVMNEGKGWTRTFNTAFERIAWPVGSFRDS 315 (382)
Q Consensus 255 ~-----~~l~~~~g~L~~~~~~~~--------------~~~~~~~~~~~iW~l~~~~~W~~~~~i~~~~~~~~~~~~~~g 315 (382)
. ..-+..+|.+.+....-. +.+....-+=+||.+++. .|..+..+|. .+.--+.+..++
T Consensus 273 ~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d~g-~Wk~~GeLp~-~l~YG~s~~~nn 350 (381)
T COG3055 273 KEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFDNG-SWKIVGELPQ-GLAYGVSLSYNN 350 (381)
T ss_pred ccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEcCC-ceeeecccCC-CccceEEEecCC
Confidence 1 112345666666655310 111122345688888854 5999998886 444344444455
Q ss_pred cEEEEEc
Q 045675 316 KIIMKSV 322 (382)
Q Consensus 316 ~l~l~~~ 322 (382)
.|++...
T Consensus 351 ~vl~IGG 357 (381)
T COG3055 351 KVLLIGG 357 (381)
T ss_pred cEEEEcc
Confidence 5666654
No 109
>PF13013 F-box-like_2: F-box-like domain
Probab=60.06 E-value=7.5 Score=29.42 Aligned_cols=30 Identities=10% Similarity=0.108 Sum_probs=23.3
Q ss_pred CCCCCCHHHHHHHHhcCChhhhhhhhccch
Q 045675 8 TVSSVPLVIITDILLQLPIKSIVRFKCVSK 37 (382)
Q Consensus 8 ~~~~LP~dll~~IL~rLp~~sl~r~r~VcK 37 (382)
.+..||+||++.|+..-..+.+...-..|+
T Consensus 21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred chhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 477899999999999999877755444444
No 110
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=59.76 E-value=5.9 Score=36.22 Aligned_cols=38 Identities=18% Similarity=0.355 Sum_probs=32.4
Q ss_pred CCCCCCCHHHHHHHHhcCCh--------hhhhhhhccchhhHhhcC
Q 045675 7 TTVSSVPLVIITDILLQLPI--------KSIVRFKCVSKSWLLLIK 44 (382)
Q Consensus 7 ~~~~~LP~dll~~IL~rLp~--------~sl~r~r~VcK~W~~li~ 44 (382)
..|..||.+++.+|+.|..- ++...+..|||.|+....
T Consensus 43 ~~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~ 88 (355)
T KOG2502|consen 43 SLWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISK 88 (355)
T ss_pred chhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhcc
Confidence 46779999999999998862 368889999999999765
No 111
>PRK04043 tolB translocation protein TolB; Provisional
Probab=59.00 E-value=1.7e+02 Score=28.08 Aligned_cols=99 Identities=15% Similarity=0.087 Sum_probs=57.7
Q ss_pred cEEEEEECCCceeeEeCCCCCCCCCeeeEEEeCCe-EEEEEecCCCccCCCCCeEEEEEECCCCC-eeEEEEeecCCccc
Q 045675 230 KFVVSYDMNLELFWRTAMPELPTDCYVKALSYDQS-LALAVYPGLGFRSRLSNRFELWVMNEGKG-WTRTFNTAFERIAW 307 (382)
Q Consensus 230 ~~i~~fD~~~~~~~~i~~P~~~~~~~~~l~~~~g~-L~~~~~~~~~~~~~~~~~~~iW~l~~~~~-W~~~~~i~~~~~~~ 307 (382)
..|..+|+.+.+-+.+....... .... ..-||+ |.+.... ...-+||.++-..+ +..+..-+.. ...
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~~g~~-~~~~-~SPDG~~la~~~~~--------~g~~~Iy~~dl~~g~~~~LT~~~~~-d~~ 281 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASSQGML-VVSD-VSKDGSKLLLTMAP--------KGQPDIYLYDTNTKTLTQITNYPGI-DVN 281 (419)
T ss_pred CEEEEEECCCCcEEEEecCCCcE-EeeE-ECCCCCEEEEEEcc--------CCCcEEEEEECCCCcEEEcccCCCc-cCc
Confidence 37999999988777763222110 1111 233664 5544433 33568888874324 6554332211 122
Q ss_pred ceEEeeCCc-EEEEEcC----eEEEEeCCCCcEEEEee
Q 045675 308 PVGSFRDSK-IIMKSVD----QFFLFNPKTKRNFILPI 340 (382)
Q Consensus 308 ~~~~~~~g~-l~l~~~~----~~~~yd~~t~~~~~v~~ 340 (382)
| ....+|+ |+|..+. .++.+|+.+++.+++-.
T Consensus 282 p-~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~ 318 (419)
T PRK04043 282 G-NFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF 318 (419)
T ss_pred c-EECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc
Confidence 3 3456675 7777754 89999999999987743
No 112
>PF13854 Kelch_5: Kelch motif
Probab=58.42 E-value=26 Score=21.02 Aligned_cols=33 Identities=15% Similarity=0.030 Sum_probs=23.4
Q ss_pred cceEEECceEEEEeeccc-ccccccEEEEEECCC
Q 045675 207 QDAVAVKGVLHWIANGIG-VLVNEKFVVSYDMNL 239 (382)
Q Consensus 207 ~~~v~~~G~lywl~~~~~-~~~~~~~i~~fD~~~ 239 (382)
++++.+++.+|..++... ......-+..||+.+
T Consensus 8 hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 8 HSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPS 41 (42)
T ss_pred eEEEEECCEEEEEcCccCCCCCEECcEEEEECCC
Confidence 688899999999998773 222344666777654
No 113
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=58.30 E-value=1.7e+02 Score=27.74 Aligned_cols=59 Identities=19% Similarity=0.127 Sum_probs=38.5
Q ss_pred eEEEEeCCCCcEEEEeeeCCCCCeEEEEEEeeceeecCCCCchHHHhhhhcceecCCCC
Q 045675 324 QFFLFNPKTKRNFILPIDSGMGYSYKVFTYVDSIVAVNGENDEKEVEAQIEGMVHDGSN 382 (382)
Q Consensus 324 ~~~~yd~~t~~~~~v~~~~~~~~~~~~~~y~~SLv~~~~~~~~~~~~~~~~~~~~~~~~ 382 (382)
+++..|++|++.+.|.-........++.+..|.|+..+...-...+.+-|=.+.-|++|
T Consensus 169 ~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~ 227 (386)
T PF14583_consen 169 RIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSN 227 (386)
T ss_dssp EEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS--
T ss_pred eEEEEECCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCc
Confidence 79999999999999866554433688999999999887655555555556666666654
No 114
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=56.97 E-value=32 Score=18.98 Aligned_cols=26 Identities=12% Similarity=-0.017 Sum_probs=18.4
Q ss_pred EEECceEEEEeecccccccccEEEEEECCCcee
Q 045675 210 VAVKGVLHWIANGIGVLVNEKFVVSYDMNLELF 242 (382)
Q Consensus 210 v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~ 242 (382)
+..+|.+|.-...+ .+.++|..+.+-
T Consensus 3 ~~~~~~v~~~~~~g-------~l~a~d~~~G~~ 28 (33)
T smart00564 3 VLSDGTVYVGSTDG-------TLYALDAKTGEI 28 (33)
T ss_pred EEECCEEEEEcCCC-------EEEEEEcccCcE
Confidence 45577888765554 899999976543
No 115
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=56.92 E-value=1.9e+02 Score=28.02 Aligned_cols=138 Identities=8% Similarity=0.007 Sum_probs=78.4
Q ss_pred EEEEEECCCCCeeeecCC-CCe------eEEeC---CcceEEECceEEEEeecccccccccEEEEEECCCceeeEeCCCC
Q 045675 180 IAEVYSTSTGKWKEVAAG-TGS------CVIYG---GQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRTAMPE 249 (382)
Q Consensus 180 ~~~vyss~t~~W~~~~~~-~~~------~~~~~---~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~ 249 (382)
.+.+|++.+++=+.++-. +.. ....+ ...-..++|.++.+..++ ....+++...---.+.-+.
T Consensus 288 dIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRG-------kaFi~~~~~~~~iqv~~~~ 360 (668)
T COG4946 288 DIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRG-------KAFIMRPWDGYSIQVGKKG 360 (668)
T ss_pred cEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecC-------cEEEECCCCCeeEEcCCCC
Confidence 577777777766655433 110 11100 023456789999998887 5555666554333333333
Q ss_pred CCCCCeeeEEEeCCeEEEEEecCCCccCCCCCeEEEEEECCCCCeeEEEEe--ecCCcccceEEeeCCc-EEEEEcC-eE
Q 045675 250 LPTDCYVKALSYDQSLALAVYPGLGFRSRLSNRFELWVMNEGKGWTRTFNT--AFERIAWPVGSFRDSK-IIMKSVD-QF 325 (382)
Q Consensus 250 ~~~~~~~~l~~~~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~W~~~~~i--~~~~~~~~~~~~~~g~-l~l~~~~-~~ 325 (382)
.+ ....+......+.+ +.. ....+.|+-.+.. ++.++ ++.. ...+.+..+|. +++..+. .+
T Consensus 361 ~V--rY~r~~~~~e~~vi-gt~-------dgD~l~iyd~~~~----e~kr~e~~lg~-I~av~vs~dGK~~vvaNdr~el 425 (668)
T COG4946 361 GV--RYRRIQVDPEGDVI-GTN-------DGDKLGIYDKDGG----EVKRIEKDLGN-IEAVKVSPDGKKVVVANDRFEL 425 (668)
T ss_pred ce--EEEEEccCCcceEE-ecc-------CCceEEEEecCCc----eEEEeeCCccc-eEEEEEcCCCcEEEEEcCceEE
Confidence 32 34444444443322 222 3667888776665 23333 3333 34456667777 5566555 99
Q ss_pred EEEeCCCCcEEEEe
Q 045675 326 FLFNPKTKRNFILP 339 (382)
Q Consensus 326 ~~yd~~t~~~~~v~ 339 (382)
+++|++++..+.++
T Consensus 426 ~vididngnv~~id 439 (668)
T COG4946 426 WVIDIDNGNVRLID 439 (668)
T ss_pred EEEEecCCCeeEec
Confidence 99999999998875
No 116
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=55.97 E-value=1.7e+02 Score=26.90 Aligned_cols=105 Identities=13% Similarity=0.005 Sum_probs=60.2
Q ss_pred ceEEEEeecccccccccEEEEEECCCceeeEeCCCCCCCCCeeeEEEeCCeEEEEEecCCCccCCCCCeEEEEEECCCCC
Q 045675 214 GVLHWIANGIGVLVNEKFVVSYDMNLELFWRTAMPELPTDCYVKALSYDQSLALAVYPGLGFRSRLSNRFELWVMNEGKG 293 (382)
Q Consensus 214 G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~~~l~~~~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~ 293 (382)
+.+||..-.+ ..|..+|+.+..-+.+..|... ....+...+|.|....+. +.++..+.. +
T Consensus 37 ~~L~w~DI~~------~~i~r~~~~~g~~~~~~~p~~~--~~~~~~d~~g~Lv~~~~g-----------~~~~~~~~~-~ 96 (307)
T COG3386 37 GALLWVDILG------GRIHRLDPETGKKRVFPSPGGF--SSGALIDAGGRLIACEHG-----------VRLLDPDTG-G 96 (307)
T ss_pred CEEEEEeCCC------CeEEEecCCcCceEEEECCCCc--ccceeecCCCeEEEEccc-----------cEEEeccCC-c
Confidence 4678887665 5899999999999999999876 334444555565554443 223333222 3
Q ss_pred -eeEEEEeec-CCc--ccceEEeeCCcEEEEEcC-------------eEEEEeCCCCcEEEE
Q 045675 294 -WTRTFNTAF-ERI--AWPVGSFRDSKIIMKSVD-------------QFFLFNPKTKRNFIL 338 (382)
Q Consensus 294 -W~~~~~i~~-~~~--~~~~~~~~~g~l~l~~~~-------------~~~~yd~~t~~~~~v 338 (382)
|.......- ... ..-..+..+|.+++..-. .++.||+.+...+.+
T Consensus 97 ~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~ 158 (307)
T COG3386 97 KITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLL 158 (307)
T ss_pred eeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEee
Confidence 544444321 111 223444455666653311 699999854444444
No 117
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=55.00 E-value=30 Score=25.10 Aligned_cols=16 Identities=25% Similarity=0.573 Sum_probs=14.2
Q ss_pred eEEEEeCCCCcEEEEe
Q 045675 324 QFFLFNPKTKRNFILP 339 (382)
Q Consensus 324 ~~~~yd~~t~~~~~v~ 339 (382)
+++.||++|++.+.+.
T Consensus 38 Rll~ydp~t~~~~vl~ 53 (89)
T PF03088_consen 38 RLLRYDPSTKETTVLL 53 (89)
T ss_dssp EEEEEETTTTEEEEEE
T ss_pred CEEEEECCCCeEEEeh
Confidence 7999999999988773
No 118
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=54.28 E-value=1.7e+02 Score=28.78 Aligned_cols=31 Identities=13% Similarity=0.187 Sum_probs=23.9
Q ss_pred cceEEECceEEEEeecccccccccEEEEEECCCc--eeeE
Q 045675 207 QDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLE--LFWR 244 (382)
Q Consensus 207 ~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~--~~~~ 244 (382)
..++..+|.+|.....+ .+.++|..+. .|+.
T Consensus 55 ~sPvv~~g~vy~~~~~g-------~l~AlD~~tG~~~W~~ 87 (488)
T cd00216 55 GTPLVVDGDMYFTTSHS-------ALFALDAATGKVLWRY 87 (488)
T ss_pred cCCEEECCEEEEeCCCC-------cEEEEECCCChhhcee
Confidence 36788899999977655 8999999764 5654
No 119
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=53.81 E-value=1.8e+02 Score=26.67 Aligned_cols=124 Identities=5% Similarity=-0.008 Sum_probs=60.6
Q ss_pred ccEEEEEECCCceee-EeCCCCCCCCCeeeEEEeCCeEEEEEecCCCccCCCCCeEEEEEECCCC--C----eeEEEEe-
Q 045675 229 EKFVVSYDMNLELFW-RTAMPELPTDCYVKALSYDQSLALAVYPGLGFRSRLSNRFELWVMNEGK--G----WTRTFNT- 300 (382)
Q Consensus 229 ~~~i~~fD~~~~~~~-~i~~P~~~~~~~~~l~~~~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~--~----W~~~~~i- 300 (382)
...++.+|.+|-+.. .+..-. ...-..-.+..+|+..++... ...++++...+-. | =+.++.+
T Consensus 174 KGkllv~~a~t~e~vas~rits-~~~IK~I~~s~~g~~liiNts--------DRvIR~ye~~di~~~~r~~e~e~~~K~q 244 (405)
T KOG1273|consen 174 KGKLLVYDAETLECVASFRITS-VQAIKQIIVSRKGRFLIINTS--------DRVIRTYEISDIDDEGRDGEVEPEHKLQ 244 (405)
T ss_pred cceEEEEecchheeeeeeeech-heeeeEEEEeccCcEEEEecC--------CceEEEEehhhhcccCccCCcChhHHHH
Confidence 358899998875332 121111 111122334556776666664 5677777776321 1 1111211
Q ss_pred ec-CCc-ccceEEeeCCcEEEEEcC---eEEEEeCCCCcEEEE-e-eeCCCCCeEEEEEEeeceeecC
Q 045675 301 AF-ERI-AWPVGSFRDSKIIMKSVD---QFFLFNPKTKRNFIL-P-IDSGMGYSYKVFTYVDSIVAVN 361 (382)
Q Consensus 301 ~~-~~~-~~~~~~~~~g~l~l~~~~---~~~~yd~~t~~~~~v-~-~~~~~~~~~~~~~y~~SLv~~~ 361 (382)
++ ..+ +.-.++..+|+-++.... .++++-..++.+.++ + -++...---+-.++.++++++.
T Consensus 245 DvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si~ 312 (405)
T KOG1273|consen 245 DVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASIA 312 (405)
T ss_pred HHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeecc
Confidence 11 011 445566666764444443 677777777776665 2 2222211123345555665553
No 120
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=53.19 E-value=2.3e+02 Score=27.82 Aligned_cols=89 Identities=8% Similarity=-0.021 Sum_probs=57.4
Q ss_pred CCEEEEEECCCCCeeeecCC---CCeeEEeCCcceEEECceEEEEeeccc----cc---------ccccEEEEEECCCce
Q 045675 178 DAIAEVYSTSTGKWKEVAAG---TGSCVIYGGQDAVAVKGVLHWIANGIG----VL---------VNEKFVVSYDMNLEL 241 (382)
Q Consensus 178 ~~~~~vyss~t~~W~~~~~~---~~~~~~~~~~~~v~~~G~lywl~~~~~----~~---------~~~~~i~~fD~~~~~ 241 (382)
...+...+++|-.|.+.... +.++.. +.++..+.+||..++=-. .. .....+-++++.+..
T Consensus 229 LgDLW~Ldl~Tl~W~kp~~~G~~PlPRSL---Hsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~ 305 (830)
T KOG4152|consen 229 LGDLWTLDLDTLTWNKPSLSGVAPLPRSL---HSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMA 305 (830)
T ss_pred ccceeEEecceeecccccccCCCCCCccc---ccceeecceeEEecceeeeeccccccccccceeeeccceeeeeecchh
Confidence 34677788889999876554 334444 688888999997764211 10 234578889999999
Q ss_pred eeEeCC--------CCCCCCCeeeEEEeCCeEEEEEec
Q 045675 242 FWRTAM--------PELPTDCYVKALSYDQSLALAVYP 271 (382)
Q Consensus 242 ~~~i~~--------P~~~~~~~~~l~~~~g~L~~~~~~ 271 (382)
|..+.+ |..+ .....+..+.+||+....
T Consensus 306 W~tl~~d~~ed~tiPR~R--AGHCAvAigtRlYiWSGR 341 (830)
T KOG4152|consen 306 WETLLMDTLEDNTIPRAR--AGHCAVAIGTRLYIWSGR 341 (830)
T ss_pred eeeeeecccccccccccc--ccceeEEeccEEEEEecc
Confidence 987643 2222 223344567777777775
No 121
>PRK04922 tolB translocation protein TolB; Provisional
Probab=52.68 E-value=2.2e+02 Score=27.36 Aligned_cols=187 Identities=11% Similarity=0.016 Sum_probs=90.3
Q ss_pred ceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEECCCCCeeeecCCCC
Q 045675 120 GMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYSTSTGKWKEVAAGTG 199 (382)
Q Consensus 120 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~ 199 (382)
...++++|..+++...+-..+.. .....+.|.++ .-++.... .....+.+++..++.-+.+.....
T Consensus 227 ~~~l~~~dl~~g~~~~l~~~~g~----------~~~~~~SpDG~-~l~~~~s~---~g~~~Iy~~d~~~g~~~~lt~~~~ 292 (433)
T PRK04922 227 RSAIYVQDLATGQRELVASFRGI----------NGAPSFSPDGR-RLALTLSR---DGNPEIYVMDLGSRQLTRLTNHFG 292 (433)
T ss_pred CcEEEEEECCCCCEEEeccCCCC----------ccCceECCCCC-EEEEEEeC---CCCceEEEEECCCCCeEECccCCC
Confidence 34688899988887666433221 11234445432 22222211 123468888888776554432211
Q ss_pred eeEEeCCcceEEECce-EEEEeecccccccccEEEEEECCCceeeEeCCCCCCCCCeeeEEEeCCe-EEEEEecCCCccC
Q 045675 200 SCVIYGGQDAVAVKGV-LHWIANGIGVLVNEKFVVSYDMNLELFWRTAMPELPTDCYVKALSYDQS-LALAVYPGLGFRS 277 (382)
Q Consensus 200 ~~~~~~~~~~v~~~G~-lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~~~l~~~~g~-L~~~~~~~~~~~~ 277 (382)
. .......-+|. +++.....+ ...|..+|+.+.+.+.+....... ..... .-+|+ |++.... .
T Consensus 293 ---~-~~~~~~spDG~~l~f~sd~~g----~~~iy~~dl~~g~~~~lt~~g~~~-~~~~~-SpDG~~Ia~~~~~--~--- 357 (433)
T PRK04922 293 ---I-DTEPTWAPDGKSIYFTSDRGG----RPQIYRVAASGGSAERLTFQGNYN-ARASV-SPDGKKIAMVHGS--G--- 357 (433)
T ss_pred ---C-ccceEECCCCCEEEEEECCCC----CceEEEEECCCCCeEEeecCCCCc-cCEEE-CCCCCEEEEEECC--C---
Confidence 0 00122333553 555544331 236888898887776664321110 11222 22555 4443332 1
Q ss_pred CCCCeEEEEEECCCCCeeEEEEeecCCcccceEEeeCCc-EEEEEcC----eEEEEeCCCCcEEEEee
Q 045675 278 RLSNRFELWVMNEGKGWTRTFNTAFERIAWPVGSFRDSK-IIMKSVD----QFFLFNPKTKRNFILPI 340 (382)
Q Consensus 278 ~~~~~~~iW~l~~~~~W~~~~~i~~~~~~~~~~~~~~g~-l~l~~~~----~~~~yd~~t~~~~~v~~ 340 (382)
....+.+|.++.. ....+. .-.....| .+..+|. |++.... .++.+|+..+..+++..
T Consensus 358 -~~~~I~v~d~~~g-~~~~Lt--~~~~~~~p-~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~~~l~~ 420 (433)
T PRK04922 358 -GQYRIAVMDLSTG-SVRTLT--PGSLDESP-SFAPNGSMVLYATREGGRGVLAAVSTDGRVRQRLVS 420 (433)
T ss_pred -CceeEEEEECCCC-CeEECC--CCCCCCCc-eECCCCCEEEEEEecCCceEEEEEECCCCceEEccc
Confidence 1234555555433 233221 11111233 4556777 5555542 79999998776666654
No 122
>PRK04922 tolB translocation protein TolB; Provisional
Probab=52.22 E-value=2.2e+02 Score=27.31 Aligned_cols=143 Identities=15% Similarity=0.020 Sum_probs=72.4
Q ss_pred CCEEEEEECCCCCeeeecCCCCeeEEeCCcceEEECce-EEEEeecccccccccEEEEEECCCceeeEeCCCCCCCCCee
Q 045675 178 DAIAEVYSTSTGKWKEVAAGTGSCVIYGGQDAVAVKGV-LHWIANGIGVLVNEKFVVSYDMNLELFWRTAMPELPTDCYV 256 (382)
Q Consensus 178 ~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~v~~~G~-lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~~ 256 (382)
...+.+++..++.-+.+....... . .....-+|. +++.....+ ...|..+|+.+.+.+.+.--... ....
T Consensus 227 ~~~l~~~dl~~g~~~~l~~~~g~~-~---~~~~SpDG~~l~~~~s~~g----~~~Iy~~d~~~g~~~~lt~~~~~-~~~~ 297 (433)
T PRK04922 227 RSAIYVQDLATGQRELVASFRGIN-G---APSFSPDGRRLALTLSRDG----NPEIYVMDLGSRQLTRLTNHFGI-DTEP 297 (433)
T ss_pred CcEEEEEECCCCCEEEeccCCCCc-c---CceECCCCCEEEEEEeCCC----CceEEEEECCCCCeEECccCCCC-ccce
Confidence 346778888877665544332110 0 123334563 555443331 24788899988776654211111 0112
Q ss_pred eEEEeCCeEEEEEecCCCccCCCCCeEEEEEECCCCC-eeEEEEeecCCcccceEEeeCCc-EEEEEcC----eEEEEeC
Q 045675 257 KALSYDQSLALAVYPGLGFRSRLSNRFELWVMNEGKG-WTRTFNTAFERIAWPVGSFRDSK-IIMKSVD----QFFLFNP 330 (382)
Q Consensus 257 ~l~~~~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~-W~~~~~i~~~~~~~~~~~~~~g~-l~l~~~~----~~~~yd~ 330 (382)
.. .-+|+-.++... . ....+||.++-..+ ..++. .. ........+..+|+ |++...+ .++.+|+
T Consensus 298 ~~-spDG~~l~f~sd--~-----~g~~~iy~~dl~~g~~~~lt-~~-g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~ 367 (433)
T PRK04922 298 TW-APDGKSIYFTSD--R-----GGRPQIYRVAASGGSAERLT-FQ-GNYNARASVSPDGKKIAMVHGSGGQYRIAVMDL 367 (433)
T ss_pred EE-CCCCCEEEEEEC--C-----CCCceEEEEECCCCCeEEee-cC-CCCccCEEECCCCCEEEEEECCCCceeEEEEEC
Confidence 21 235654444443 2 33457777764323 44332 11 11122345556776 5555432 6999999
Q ss_pred CCCcEEEEe
Q 045675 331 KTKRNFILP 339 (382)
Q Consensus 331 ~t~~~~~v~ 339 (382)
.+++.+.+.
T Consensus 368 ~~g~~~~Lt 376 (433)
T PRK04922 368 STGSVRTLT 376 (433)
T ss_pred CCCCeEECC
Confidence 999887663
No 123
>PLN00181 protein SPA1-RELATED; Provisional
Probab=51.74 E-value=3.1e+02 Score=28.85 Aligned_cols=175 Identities=12% Similarity=0.108 Sum_probs=86.2
Q ss_pred ceeEEEEcccccceec-cCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEECCCCC-eeeecCC
Q 045675 120 GMAFVLWNPATNEFKG-LPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYSTSTGK-WKEVAAG 197 (382)
Q Consensus 120 ~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vyss~t~~-W~~~~~~ 197 (382)
+..+.|||..+++... +.. +.. ....+.+++..+.+-+.+- .+..+.+|+..++. .......
T Consensus 554 Dg~v~lWd~~~~~~~~~~~~----H~~------~V~~l~~~p~~~~~L~Sgs------~Dg~v~iWd~~~~~~~~~~~~~ 617 (793)
T PLN00181 554 EGVVQVWDVARSQLVTEMKE----HEK------RVWSIDYSSADPTLLASGS------DDGSVKLWSINQGVSIGTIKTK 617 (793)
T ss_pred CCeEEEEECCCCeEEEEecC----CCC------CEEEEEEcCCCCCEEEEEc------CCCEEEEEECCCCcEEEEEecC
Confidence 4577888877665332 111 111 2345666665444433332 23478888887642 1111111
Q ss_pred CCeeEEeCCcceEEE---CceEEEEeecccccccccEEEEEECCCce--eeEeCCCCCCCCCeeeEEEeCCeEEEEEecC
Q 045675 198 TGSCVIYGGQDAVAV---KGVLHWIANGIGVLVNEKFVVSYDMNLEL--FWRTAMPELPTDCYVKALSYDQSLALAVYPG 272 (382)
Q Consensus 198 ~~~~~~~~~~~~v~~---~G~lywl~~~~~~~~~~~~i~~fD~~~~~--~~~i~~P~~~~~~~~~l~~~~g~L~~~~~~~ 272 (382)
. .. ..+.+ +|.....+..+ ..|..+|+.+.. ...+. ... .....+...++...+....
T Consensus 618 -~--~v----~~v~~~~~~g~~latgs~d------g~I~iwD~~~~~~~~~~~~--~h~-~~V~~v~f~~~~~lvs~s~- 680 (793)
T PLN00181 618 -A--NI----CCVQFPSESGRSLAFGSAD------HKVYYYDLRNPKLPLCTMI--GHS-KTVSYVRFVDSSTLVSSST- 680 (793)
T ss_pred -C--Ce----EEEEEeCCCCCEEEEEeCC------CeEEEEECCCCCccceEec--CCC-CCEEEEEEeCCCEEEEEEC-
Confidence 0 00 11211 35554444433 588899987643 11221 111 1222333346665444443
Q ss_pred CCccCCCCCeEEEEEECCCC---CeeEEEEeec-CCcccceEEeeCCcEEEEE-cC-eEEEEeCCCCc
Q 045675 273 LGFRSRLSNRFELWVMNEGK---GWTRTFNTAF-ERIAWPVGSFRDSKIIMKS-VD-QFFLFNPKTKR 334 (382)
Q Consensus 273 ~~~~~~~~~~~~iW~l~~~~---~W~~~~~i~~-~~~~~~~~~~~~g~l~l~~-~~-~~~~yd~~t~~ 334 (382)
...+.||.+.... .|..+..+.- ......+++..++.++... .+ .+.+||.....
T Consensus 681 -------D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~ 741 (793)
T PLN00181 681 -------DNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPM 741 (793)
T ss_pred -------CCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCC
Confidence 6789999987532 1665555422 2223345555556654444 33 88888876553
No 124
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=51.46 E-value=1.3e+02 Score=30.77 Aligned_cols=99 Identities=19% Similarity=0.302 Sum_probs=64.5
Q ss_pred ccCceEEEeeCCCCceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEE
Q 045675 106 SCNGLLCLDVSSAFGMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYS 185 (382)
Q Consensus 106 s~~Gll~~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vys 185 (382)
|-|++||-..- +.++-+|.|-+++.+.+=.-+. ......|.|..++|.|-+-.+ .++.+.+
T Consensus 378 SKn~fLLSSSM---DKTVRLWh~~~~~CL~~F~Hnd----------fVTcVaFnPvDDryFiSGSLD------~KvRiWs 438 (712)
T KOG0283|consen 378 SKNNFLLSSSM---DKTVRLWHPGRKECLKVFSHND----------FVTCVAFNPVDDRYFISGSLD------GKVRLWS 438 (712)
T ss_pred ccCCeeEeccc---cccEEeecCCCcceeeEEecCC----------eeEEEEecccCCCcEeecccc------cceEEee
Confidence 44777776554 5689999999888775432222 456789999999999876554 3788887
Q ss_pred CCCC---CeeeecCC-CCeeEEeCCcceE--EECceEEEEeecc
Q 045675 186 TSTG---KWKEVAAG-TGSCVIYGGQDAV--AVKGVLHWIANGI 223 (382)
Q Consensus 186 s~t~---~W~~~~~~-~~~~~~~~~~~~v--~~~G~lywl~~~~ 223 (382)
.-.. -|..+..+ ...++...+..+| .++|.+++....+
T Consensus 439 I~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~ 482 (712)
T KOG0283|consen 439 ISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEG 482 (712)
T ss_pred cCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccC
Confidence 7765 57776655 2233332222333 5677777776655
No 125
>PRK04792 tolB translocation protein TolB; Provisional
Probab=50.13 E-value=2.5e+02 Score=27.23 Aligned_cols=142 Identities=15% Similarity=0.050 Sum_probs=72.4
Q ss_pred CEEEEEECCCCCeeeecCCCCeeEEeCCcceEEECce-EEEEeecccccccccEEEEEECCCceeeEeCCCCCCCCCeee
Q 045675 179 AIAEVYSTSTGKWKEVAAGTGSCVIYGGQDAVAVKGV-LHWIANGIGVLVNEKFVVSYDMNLELFWRTAMPELPTDCYVK 257 (382)
Q Consensus 179 ~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~v~~~G~-lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~~~ 257 (382)
..+.+++..++.-+.+...... .......-+|. +++....++ ...|..+|+.+.+.+.+.-.... .....
T Consensus 242 ~~L~~~dl~tg~~~~lt~~~g~----~~~~~wSPDG~~La~~~~~~g----~~~Iy~~dl~tg~~~~lt~~~~~-~~~p~ 312 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSFPGI----NGAPRFSPDGKKLALVLSKDG----QPEIYVVDIATKALTRITRHRAI-DTEPS 312 (448)
T ss_pred cEEEEEECCCCCeEEecCCCCC----cCCeeECCCCCEEEEEEeCCC----CeEEEEEECCCCCeEECccCCCC-ccceE
Confidence 4677778777765444332110 00122233554 444433331 34788899998887765321111 01111
Q ss_pred EEEeCCeEEEEEecCCCccCCCCCeEEEEEECCCCC-eeEEEEeecCCcccceEEeeCCc-EEEEEcC----eEEEEeCC
Q 045675 258 ALSYDQSLALAVYPGLGFRSRLSNRFELWVMNEGKG-WTRTFNTAFERIAWPVGSFRDSK-IIMKSVD----QFFLFNPK 331 (382)
Q Consensus 258 l~~~~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~-W~~~~~i~~~~~~~~~~~~~~g~-l~l~~~~----~~~~yd~~ 331 (382)
. .-+|+-.++... . ....+||.++-..+ +.++. ........ ..+..+|+ |++.... .++.+|++
T Consensus 313 w-SpDG~~I~f~s~--~-----~g~~~Iy~~dl~~g~~~~Lt-~~g~~~~~-~~~SpDG~~l~~~~~~~g~~~I~~~dl~ 382 (448)
T PRK04792 313 W-HPDGKSLIFTSE--R-----GGKPQIYRVNLASGKVSRLT-FEGEQNLG-GSITPDGRSMIMVNRTNGKFNIARQDLE 382 (448)
T ss_pred E-CCCCCEEEEEEC--C-----CCCceEEEEECCCCCEEEEe-cCCCCCcC-eeECCCCCEEEEEEecCCceEEEEEECC
Confidence 1 235654433343 2 33467888764423 55442 11111122 24456776 5555442 78899999
Q ss_pred CCcEEEEe
Q 045675 332 TKRNFILP 339 (382)
Q Consensus 332 t~~~~~v~ 339 (382)
+++.+.+.
T Consensus 383 ~g~~~~lt 390 (448)
T PRK04792 383 TGAMQVLT 390 (448)
T ss_pred CCCeEEcc
Confidence 99887763
No 126
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=50.11 E-value=55 Score=25.36 Aligned_cols=54 Identities=7% Similarity=0.101 Sum_probs=35.9
Q ss_pred EeeCCcEEEE-Ec-----CeEEEEeCCCCcEEEEeee---CCCCCeEEEEEEeeceeecCCCC
Q 045675 311 SFRDSKIIMK-SV-----DQFFLFNPKTKRNFILPID---SGMGYSYKVFTYVDSIVAVNGEN 364 (382)
Q Consensus 311 ~~~~g~l~l~-~~-----~~~~~yd~~t~~~~~v~~~---~~~~~~~~~~~y~~SLv~~~~~~ 364 (382)
++-||-|+.. .. ..+++||+++.+++.+..+ ...........|..+|.-+....
T Consensus 2 icinGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~ 64 (129)
T PF08268_consen 2 ICINGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYND 64 (129)
T ss_pred EEECcEEEeEEEECCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecC
Confidence 3446776533 33 2899999999999999875 22223466778888887654333
No 127
>PRK03629 tolB translocation protein TolB; Provisional
Probab=49.03 E-value=2.5e+02 Score=26.98 Aligned_cols=186 Identities=12% Similarity=0.022 Sum_probs=91.9
Q ss_pred ceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEECCCCCeeeecCCCC
Q 045675 120 GMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYSTSTGKWKEVAAGTG 199 (382)
Q Consensus 120 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~ 199 (382)
...++++|.-....+.|-..+. ......+.|++...-.+. . ......+.+++..++.-+.+.....
T Consensus 178 ~~~l~~~d~dg~~~~~lt~~~~----------~~~~p~wSPDG~~la~~s--~--~~g~~~i~i~dl~~G~~~~l~~~~~ 243 (429)
T PRK03629 178 PYELRVSDYDGYNQFVVHRSPQ----------PLMSPAWSPDGSKLAYVT--F--ESGRSALVIQTLANGAVRQVASFPR 243 (429)
T ss_pred ceeEEEEcCCCCCCEEeecCCC----------ceeeeEEcCCCCEEEEEE--e--cCCCcEEEEEECCCCCeEEccCCCC
Confidence 4478888876655444422221 122455566544322221 1 1123467778877766444433211
Q ss_pred eeEEeCCcceEEECc-eEEEEeecccccccccEEEEEECCCceeeEeCCCCCCCCCeeeEE-EeCCeEEEEEecCCCccC
Q 045675 200 SCVIYGGQDAVAVKG-VLHWIANGIGVLVNEKFVVSYDMNLELFWRTAMPELPTDCYVKAL-SYDQSLALAVYPGLGFRS 277 (382)
Q Consensus 200 ~~~~~~~~~~v~~~G-~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~~~l~-~~~g~L~~~~~~~~~~~~ 277 (382)
.. . .....-+| .+++.....+ ...|..+|+.+.+.+.+.-... ...... .-+|+-.++... .
T Consensus 244 ~~---~-~~~~SPDG~~La~~~~~~g----~~~I~~~d~~tg~~~~lt~~~~---~~~~~~wSPDG~~I~f~s~--~--- 307 (429)
T PRK03629 244 HN---G-APAFSPDGSKLAFALSKTG----SLNLYVMDLASGQIRQVTDGRS---NNTEPTWFPDSQNLAYTSD--Q--- 307 (429)
T ss_pred Cc---C-CeEECCCCCEEEEEEcCCC----CcEEEEEECCCCCEEEccCCCC---CcCceEECCCCCEEEEEeC--C---
Confidence 10 0 12233356 3666544331 2368889998887766522111 111122 235653333333 1
Q ss_pred CCCCeEEEEEECCCCC-eeEEEEeecCCcccceEEeeCCc-EEEEEcC----eEEEEeCCCCcEEEEe
Q 045675 278 RLSNRFELWVMNEGKG-WTRTFNTAFERIAWPVGSFRDSK-IIMKSVD----QFFLFNPKTKRNFILP 339 (382)
Q Consensus 278 ~~~~~~~iW~l~~~~~-W~~~~~i~~~~~~~~~~~~~~g~-l~l~~~~----~~~~yd~~t~~~~~v~ 339 (382)
....+||.++-..+ -.++. -. ........+..+|+ |++.... .++.+|+++++.+.+.
T Consensus 308 --~g~~~Iy~~d~~~g~~~~lt-~~-~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt 371 (429)
T PRK03629 308 --AGRPQVYKVNINGGAPQRIT-WE-GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLT 371 (429)
T ss_pred --CCCceEEEEECCCCCeEEee-cC-CCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeC
Confidence 33468888764323 22221 11 11122344556776 5554432 6889999999988774
No 128
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=48.69 E-value=2.3e+02 Score=26.51 Aligned_cols=104 Identities=13% Similarity=0.008 Sum_probs=62.8
Q ss_pred EEEEEECCCceee-EeCCCCCCCCCeeeEEEeCCeEEEEEecCCCcc---CCCCCeEEEEEECCCCCeeEEEEeecCCc-
Q 045675 231 FVVSYDMNLELFW-RTAMPELPTDCYVKALSYDQSLALAVYPGLGFR---SRLSNRFELWVMNEGKGWTRTFNTAFERI- 305 (382)
Q Consensus 231 ~i~~fD~~~~~~~-~i~~P~~~~~~~~~l~~~~g~L~~~~~~~~~~~---~~~~~~~~iW~l~~~~~W~~~~~i~~~~~- 305 (382)
.|.++|..+.+.. .++.-... ...+.-.+..|+++... ..+ ......++||-.+.. ..+.+|++..-
T Consensus 28 ~v~ViD~~~~~v~g~i~~G~~P---~~~~spDg~~lyva~~~--~~R~~~G~~~d~V~v~D~~t~---~~~~~i~~p~~p 99 (352)
T TIGR02658 28 QVYTIDGEAGRVLGMTDGGFLP---NPVVASDGSFFAHASTV--YSRIARGKRTDYVEVIDPQTH---LPIADIELPEGP 99 (352)
T ss_pred eEEEEECCCCEEEEEEEccCCC---ceeECCCCCEEEEEecc--ccccccCCCCCEEEEEECccC---cEEeEEccCCCc
Confidence 7889999886653 34433221 22233334457777772 111 113678888887776 56667765321
Q ss_pred -------ccceEEeeCCcE-EEEEcC---eEEEEeCCCCcEEE-EeeeC
Q 045675 306 -------AWPVGSFRDSKI-IMKSVD---QFFLFNPKTKRNFI-LPIDS 342 (382)
Q Consensus 306 -------~~~~~~~~~g~l-~l~~~~---~~~~yd~~t~~~~~-v~~~~ 342 (382)
-..+++..+|+. |+..-+ .+-++|+++++... +..+.
T Consensus 100 ~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~ 148 (352)
T TIGR02658 100 RFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD 148 (352)
T ss_pred hhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC
Confidence 235677788884 444422 89999999998654 66653
No 129
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=48.53 E-value=35 Score=19.94 Aligned_cols=23 Identities=13% Similarity=0.319 Sum_probs=16.9
Q ss_pred cEEEEEcC-eEEEEeCCCCcEEEE
Q 045675 316 KIIMKSVD-QFFLFNPKTKRNFIL 338 (382)
Q Consensus 316 ~l~l~~~~-~~~~yd~~t~~~~~v 338 (382)
.|++...+ .++.+|.+|++...-
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~ 25 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWK 25 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEE
T ss_pred EEEEeCCCCEEEEEECCCCCEEEe
Confidence 35555444 899999999986654
No 130
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=47.88 E-value=2.2e+02 Score=25.96 Aligned_cols=98 Identities=9% Similarity=0.140 Sum_probs=56.8
Q ss_pred cEEEEEECCCc-----eeeEe-CCCCCCCCCeeeEEEeCCeEEEEEecCCCccCCCCCeEEEEEECCCCCeeEEEEeecC
Q 045675 230 KFVVSYDMNLE-----LFWRT-AMPELPTDCYVKALSYDQSLALAVYPGLGFRSRLSNRFELWVMNEGKGWTRTFNTAFE 303 (382)
Q Consensus 230 ~~i~~fD~~~~-----~~~~i-~~P~~~~~~~~~l~~~~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~W~~~~~i~~~ 303 (382)
..|+.|++.+. ++..+ ..+.. +....+...+|+|.+.. ...+.+|.++..+.+.+...++..
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~--g~V~ai~~~~~~lv~~~----------g~~l~v~~l~~~~~l~~~~~~~~~ 129 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVK--GPVTAICSFNGRLVVAV----------GNKLYVYDLDNSKTLLKKAFYDSP 129 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEES--S-EEEEEEETTEEEEEE----------TTEEEEEEEETTSSEEEEEEE-BS
T ss_pred cEEEEEEEEcccccceEEEEEEEEeec--CcceEhhhhCCEEEEee----------cCEEEEEEccCcccchhhheecce
Confidence 36666666663 44443 11111 14567788899955433 458899999988338888777655
Q ss_pred CcccceEEeeCCcEEEEEcC----eEEEEeCCCCcEEEEeee
Q 045675 304 RIAWPVGSFRDSKIIMKSVD----QFFLFNPKTKRNFILPID 341 (382)
Q Consensus 304 ~~~~~~~~~~~g~l~l~~~~----~~~~yd~~t~~~~~v~~~ 341 (382)
....-+.+. ++.+++.+- .++.|+.+.+++..+.-.
T Consensus 130 ~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d 169 (321)
T PF03178_consen 130 FYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARD 169 (321)
T ss_dssp SSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEE
T ss_pred EEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEec
Confidence 444344443 344444432 566778877777777543
No 131
>PRK01742 tolB translocation protein TolB; Provisional
Probab=47.75 E-value=2.6e+02 Score=26.81 Aligned_cols=183 Identities=14% Similarity=-0.003 Sum_probs=88.2
Q ss_pred eeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEECCCCCeeeecCCCCe
Q 045675 121 MAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYSTSTGKWKEVAAGTGS 200 (382)
Q Consensus 121 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~~ 200 (382)
..++|+|.-....+.|-.... ......+.|.++.. +.. .. ......+.+++..++.-+.+......
T Consensus 184 ~~i~i~d~dg~~~~~lt~~~~----------~v~~p~wSPDG~~l-a~~-s~--~~~~~~i~i~dl~tg~~~~l~~~~g~ 249 (429)
T PRK01742 184 YEVRVADYDGFNQFIVNRSSQ----------PLMSPAWSPDGSKL-AYV-SF--ENKKSQLVVHDLRSGARKVVASFRGH 249 (429)
T ss_pred EEEEEECCCCCCceEeccCCC----------ccccceEcCCCCEE-EEE-Ee--cCCCcEEEEEeCCCCceEEEecCCCc
Confidence 577888876554333322211 12234455544322 221 11 11234677777777654444322111
Q ss_pred eEEeCCcceEEECce-EEEEeecccccccccEEEEEECCCceeeEeCCCCCCCCCeeeEEEeCCeEEEEEecCCCccCCC
Q 045675 201 CVIYGGQDAVAVKGV-LHWIANGIGVLVNEKFVVSYDMNLELFWRTAMPELPTDCYVKALSYDQSLALAVYPGLGFRSRL 279 (382)
Q Consensus 201 ~~~~~~~~~v~~~G~-lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~~~l~~~~g~L~~~~~~~~~~~~~~ 279 (382)
. ......-+|. +.+....++ ...|..+|+.+...+.+.-.... ..... -.-+|+..++... .
T Consensus 250 ~----~~~~wSPDG~~La~~~~~~g----~~~Iy~~d~~~~~~~~lt~~~~~-~~~~~-wSpDG~~i~f~s~-------~ 312 (429)
T PRK01742 250 N----GAPAFSPDGSRLAFASSKDG----VLNIYVMGANGGTPSQLTSGAGN-NTEPS-WSPDGQSILFTSD-------R 312 (429)
T ss_pred c----CceeECCCCCEEEEEEecCC----cEEEEEEECCCCCeEeeccCCCC-cCCEE-ECCCCCEEEEEEC-------C
Confidence 0 0122333564 444433321 23578889887776655221110 01111 1236653333333 1
Q ss_pred CCeEEEEEECCCCCeeEEEEeecCCcccceEEeeCCc-EEEEEcCeEEEEeCCCCcEEEE
Q 045675 280 SNRFELWVMNEGKGWTRTFNTAFERIAWPVGSFRDSK-IIMKSVDQFFLFNPKTKRNFIL 338 (382)
Q Consensus 280 ~~~~~iW~l~~~~~W~~~~~i~~~~~~~~~~~~~~g~-l~l~~~~~~~~yd~~t~~~~~v 338 (382)
....+||.++...+.... +.... . ...+..+|+ |++...+.++.+|+.+++++.+
T Consensus 313 ~g~~~I~~~~~~~~~~~~--l~~~~-~-~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~~~l 368 (429)
T PRK01742 313 SGSPQVYRMSASGGGASL--VGGRG-Y-SAQISADGKTLVMINGDNVVKQDLTSGSTEVL 368 (429)
T ss_pred CCCceEEEEECCCCCeEE--ecCCC-C-CccCCCCCCEEEEEcCCCEEEEECCCCCeEEe
Confidence 456799998764233322 22111 1 233455666 5566556888899999987765
No 132
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=45.41 E-value=1.8e+02 Score=28.96 Aligned_cols=103 Identities=10% Similarity=0.043 Sum_probs=55.8
Q ss_pred eEEEEeecccccccccEEEEEECCCceeeE-eCCCCCCCCCeeeEEEeCCeEEEEEecCCCccCCCCCeEEEEEECCCCC
Q 045675 215 VLHWIANGIGVLVNEKFVVSYDMNLELFWR-TAMPELPTDCYVKALSYDQSLALAVYPGLGFRSRLSNRFELWVMNEGKG 293 (382)
Q Consensus 215 ~lywl~~~~~~~~~~~~i~~fD~~~~~~~~-i~~P~~~~~~~~~l~~~~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~ 293 (382)
-||..+... .|..|+++.+.|-. +..-... ...+.+-.+.|-|++ +.. ...++.|-....+.
T Consensus 147 Dly~~gsg~-------evYRlNLEqGrfL~P~~~~~~~-lN~v~in~~hgLla~-Gt~--------~g~VEfwDpR~ksr 209 (703)
T KOG2321|consen 147 DLYLVGSGS-------EVYRLNLEQGRFLNPFETDSGE-LNVVSINEEHGLLAC-GTE--------DGVVEFWDPRDKSR 209 (703)
T ss_pred cEEEeecCc-------ceEEEEcccccccccccccccc-ceeeeecCccceEEe-ccc--------CceEEEecchhhhh
Confidence 466665554 79999999998843 2221110 023334445555442 332 67899998877522
Q ss_pred eeEEEEeec----CCc--------ccceEEeeCCcEEEEEcC---eEEEEeCCCCcEEEE
Q 045675 294 WTRTFNTAF----ERI--------AWPVGSFRDSKIIMKSVD---QFFLFNPKTKRNFIL 338 (382)
Q Consensus 294 W~~~~~i~~----~~~--------~~~~~~~~~g~l~l~~~~---~~~~yd~~t~~~~~v 338 (382)
+.+++. ... +..+.+.++| |=+..+. .+++||+++.+--.+
T Consensus 210 ---v~~l~~~~~v~s~pg~~~~~svTal~F~d~g-L~~aVGts~G~v~iyDLRa~~pl~~ 265 (703)
T KOG2321|consen 210 ---VGTLDAASSVNSHPGGDAAPSVTALKFRDDG-LHVAVGTSTGSVLIYDLRASKPLLV 265 (703)
T ss_pred ---heeeecccccCCCccccccCcceEEEecCCc-eeEEeeccCCcEEEEEcccCCceee
Confidence 222221 111 3334444444 4444432 899999998875444
No 133
>PTZ00421 coronin; Provisional
Probab=44.42 E-value=3.3e+02 Score=26.93 Aligned_cols=160 Identities=11% Similarity=0.044 Sum_probs=72.8
Q ss_pred EEEEeeCCCCCeEEEEEEeecCCCCCEEEEEECCCCCeee-ecCCCCeeEEeCCcceEEECceEEEEeecccccccccEE
Q 045675 154 LGFGFNQDTNDYVLVRIVNFQARYDAIAEVYSTSTGKWKE-VAAGTGSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFV 232 (382)
Q Consensus 154 ~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vyss~t~~W~~-~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i 232 (382)
..+.|.|..+.+-+.+. .+..+.|++..++.-.. ........ . .-...-+|.+...++.+ ..|
T Consensus 129 ~~l~f~P~~~~iLaSgs------~DgtVrIWDl~tg~~~~~l~~h~~~V-~---sla~spdG~lLatgs~D------g~I 192 (493)
T PTZ00421 129 GIVSFHPSAMNVLASAG------ADMVVNVWDVERGKAVEVIKCHSDQI-T---SLEWNLDGSLLCTTSKD------KKL 192 (493)
T ss_pred EEEEeCcCCCCEEEEEe------CCCEEEEEECCCCeEEEEEcCCCCce-E---EEEEECCCCEEEEecCC------CEE
Confidence 35667776544433322 33578999988764221 11111110 0 01122356655554443 478
Q ss_pred EEEECCCceee-EeCCCCCCCCCeeeEE-EeCCeEEEEEecCCCccCCCCCeEEEEEECCCCCeeEEEEeecC--Ccccc
Q 045675 233 VSYDMNLELFW-RTAMPELPTDCYVKAL-SYDQSLALAVYPGLGFRSRLSNRFELWVMNEGKGWTRTFNTAFE--RIAWP 308 (382)
Q Consensus 233 ~~fD~~~~~~~-~i~~P~~~~~~~~~l~-~~~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~W~~~~~i~~~--~~~~~ 308 (382)
-.+|+.+.+.. .+...... ...... ..++.+.+..... . .....+.+|-+..... ....+.+. .....
T Consensus 193 rIwD~rsg~~v~tl~~H~~~--~~~~~~w~~~~~~ivt~G~s-~---s~Dr~VklWDlr~~~~--p~~~~~~d~~~~~~~ 264 (493)
T PTZ00421 193 NIIDPRDGTIVSSVEAHASA--KSQRCLWAKRKDLIITLGCS-K---SQQRQIMLWDTRKMAS--PYSTVDLDQSSALFI 264 (493)
T ss_pred EEEECCCCcEEEEEecCCCC--cceEEEEcCCCCeEEEEecC-C---CCCCeEEEEeCCCCCC--ceeEeccCCCCceEE
Confidence 88999876532 22222111 111111 1233333333220 1 1357899999876522 11122211 11111
Q ss_pred eEEeeCCcE-EEEEc-C-eEEEEeCCCCcEEE
Q 045675 309 VGSFRDSKI-IMKSV-D-QFFLFNPKTKRNFI 337 (382)
Q Consensus 309 ~~~~~~g~l-~l~~~-~-~~~~yd~~t~~~~~ 337 (382)
..+..++.+ ++... + .+.+||+.+++...
T Consensus 265 ~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~ 296 (493)
T PTZ00421 265 PFFDEDTNLLYIGSKGEGNIRCFELMNERLTF 296 (493)
T ss_pred EEEcCCCCEEEEEEeCCCeEEEEEeeCCceEE
Confidence 122335554 44442 3 78888888776543
No 134
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=43.81 E-value=1.7e+02 Score=26.81 Aligned_cols=61 Identities=18% Similarity=0.170 Sum_probs=43.8
Q ss_pred CCCeEEEEEECCCCCeeEEEEeecCCcccceEEeeCCcEE-EEEcC-eEEEEeCCCCcEEEEeee
Q 045675 279 LSNRFELWVMNEGKGWTRTFNTAFERIAWPVGSFRDSKII-MKSVD-QFFLFNPKTKRNFILPID 341 (382)
Q Consensus 279 ~~~~~~iW~l~~~~~W~~~~~i~~~~~~~~~~~~~~g~l~-l~~~~-~~~~yd~~t~~~~~v~~~ 341 (382)
+..++.||.|.+- . +.+.+|..+.-..-+.+..++.|+ +-.++ .+-.||+..+++-++.-.
T Consensus 376 DDrTvKvWdLrNM-R-splATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrt 438 (481)
T KOG0300|consen 376 DDRTVKVWDLRNM-R-SPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRT 438 (481)
T ss_pred CCceEEEeeeccc-c-CcceeeecCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcc
Confidence 4678888988765 2 456677666556667777666655 44555 899999999998888643
No 135
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=41.79 E-value=33 Score=30.42 Aligned_cols=42 Identities=19% Similarity=0.277 Sum_probs=32.7
Q ss_pred CCCCCCCCHHHHHHHHhcCC-hhhhhhhhccchhhHhhcCCHH
Q 045675 6 TTTVSSVPLVIITDILLQLP-IKSIVRFKCVSKSWLLLIKSSE 47 (382)
Q Consensus 6 ~~~~~~LP~dll~~IL~rLp-~~sl~r~r~VcK~W~~li~sp~ 47 (382)
..+...||.+++.+||.||| -.+|.....|-..-..++++..
T Consensus 199 ~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~ 241 (332)
T KOG3926|consen 199 GLTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERR 241 (332)
T ss_pred CCCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHH
Confidence 45778999999999999999 5888888887655555555443
No 136
>PF15408 PH_7: Pleckstrin homology domain
Probab=41.61 E-value=13 Score=26.39 Aligned_cols=23 Identities=26% Similarity=0.517 Sum_probs=19.5
Q ss_pred hhhhhhhccchhhHhhcCCHHHH
Q 045675 27 KSIVRFKCVSKSWLLLIKSSEFV 49 (382)
Q Consensus 27 ~sl~r~r~VcK~W~~li~sp~F~ 49 (382)
+-++-.+-|||+|-..+.+|+|+
T Consensus 77 ~~FA~S~~~~~~Wi~~mN~~s~~ 99 (104)
T PF15408_consen 77 QCFASSKKVCQSWIQVMNSPSFR 99 (104)
T ss_pred hhhhhHHHHHHHHHHHhcChhhh
Confidence 45666788999999999999985
No 137
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=41.30 E-value=3.4e+02 Score=26.33 Aligned_cols=191 Identities=17% Similarity=0.159 Sum_probs=95.3
Q ss_pred eccCceEEEeeCCCCceeEEEEcc-cccc-eeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEE
Q 045675 105 GSCNGLLCLDVSSAFGMAFVLWNP-ATNE-FKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAE 182 (382)
Q Consensus 105 ~s~~Gll~~~~~~~~~~~~~V~NP-~T~~-~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~ 182 (382)
-+-+|..++.... +..+.||+. ..+. .+.|...+. ....+.|.|.+ ...+-+- .+..+.
T Consensus 211 fs~d~~~l~s~s~--D~tiriwd~~~~~~~~~~l~gH~~----------~v~~~~f~p~g-~~i~Sgs------~D~tvr 271 (456)
T KOG0266|consen 211 FSPDGSYLLSGSD--DKTLRIWDLKDDGRNLKTLKGHST----------YVTSVAFSPDG-NLLVSGS------DDGTVR 271 (456)
T ss_pred ECCCCcEEEEecC--CceEEEeeccCCCeEEEEecCCCC----------ceEEEEecCCC-CEEEEec------CCCcEE
Confidence 3446654444433 567888877 3322 344443332 24567777766 3333332 345899
Q ss_pred EEECCCCCeeeecCCCCeeEEeCCcceEEECceEEEEeecccccccccEEEEEECCCceee---EeCCCCCCCCCeeeEE
Q 045675 183 VYSTSTGKWKEVAAGTGSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFW---RTAMPELPTDCYVKAL 259 (382)
Q Consensus 183 vyss~t~~W~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~---~i~~P~~~~~~~~~l~ 259 (382)
|++.++++=...-.... ... . .....-+|...+.+..+ ..|..+|+.++... .+....... ....+.
T Consensus 272 iWd~~~~~~~~~l~~hs-~~i-s-~~~f~~d~~~l~s~s~d------~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~ 341 (456)
T KOG0266|consen 272 IWDVRTGECVRKLKGHS-DGI-S-GLAFSPDGNLLVSASYD------GTIRVWDLETGSKLCLKLLSGAENSA-PVTSVQ 341 (456)
T ss_pred EEeccCCeEEEeeeccC-Cce-E-EEEECCCCCEEEEcCCC------ccEEEEECCCCceeeeecccCCCCCC-ceeEEE
Confidence 99988843221111101 011 0 12233356666665433 58999999999975 222211110 112222
Q ss_pred E-eCCeEEEEEecCCCccCCCCCeEEEEEECCCCC---eeEEEEeecCCcccceEEeeCCcE-EEEEcC-eEEEEeCCCC
Q 045675 260 S-YDQSLALAVYPGLGFRSRLSNRFELWVMNEGKG---WTRTFNTAFERIAWPVGSFRDSKI-IMKSVD-QFFLFNPKTK 333 (382)
Q Consensus 260 ~-~~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~---W~~~~~i~~~~~~~~~~~~~~g~l-~l~~~~-~~~~yd~~t~ 333 (382)
. -+|+..+.... ...+.+|.+....- |.-.. ....++..+.. ..+|.. +....+ .+..+|+.++
T Consensus 342 fsp~~~~ll~~~~--------d~~~~~w~l~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~i~sg~~d~~v~~~~~~s~ 411 (456)
T KOG0266|consen 342 FSPNGKYLLSASL--------DRTLKLWDLRSGKSVGTYTGHS-NLVRCIFSPTL-STGGKLIYSGSEDGSVYVWDSSSG 411 (456)
T ss_pred ECCCCcEEEEecC--------CCeEEEEEccCCcceeeecccC-CcceeEecccc-cCCCCeEEEEeCCceEEEEeCCcc
Confidence 2 24554444443 67999999986521 22111 01112223333 234554 444444 8999999974
Q ss_pred c
Q 045675 334 R 334 (382)
Q Consensus 334 ~ 334 (382)
.
T Consensus 412 ~ 412 (456)
T KOG0266|consen 412 G 412 (456)
T ss_pred c
Confidence 3
No 138
>PRK00178 tolB translocation protein TolB; Provisional
Probab=40.94 E-value=3.3e+02 Score=26.00 Aligned_cols=142 Identities=15% Similarity=0.071 Sum_probs=71.7
Q ss_pred CCEEEEEECCCCCeeeecCCCCeeEEeCCcceEEECce-EEEEeecccccccccEEEEEECCCceeeEeCCCCCCCCCee
Q 045675 178 DAIAEVYSTSTGKWKEVAAGTGSCVIYGGQDAVAVKGV-LHWIANGIGVLVNEKFVVSYDMNLELFWRTAMPELPTDCYV 256 (382)
Q Consensus 178 ~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~v~~~G~-lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~~ 256 (382)
...+.+++..++.-+.+...... . ......-+|. +++.....+ ...|..+|+.+.+.+.+.-.... ....
T Consensus 222 ~~~l~~~~l~~g~~~~l~~~~g~--~--~~~~~SpDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~lt~~~~~-~~~~ 292 (430)
T PRK00178 222 RPRIFVQNLDTGRREQITNFEGL--N--GAPAWSPDGSKLAFVLSKDG----NPEIYVMDLASRQLSRVTNHPAI-DTEP 292 (430)
T ss_pred CCEEEEEECCCCCEEEccCCCCC--c--CCeEECCCCCEEEEEEccCC----CceEEEEECCCCCeEEcccCCCC-cCCe
Confidence 34788888888766654433210 0 0122233553 444443331 24788999998887765321111 1111
Q ss_pred eEEEeCCe-EEEEEecCCCccCCCCCeEEEEEECCCCC-eeEEEEeecCCcccceEEeeCCc-EEEEEcC----eEEEEe
Q 045675 257 KALSYDQS-LALAVYPGLGFRSRLSNRFELWVMNEGKG-WTRTFNTAFERIAWPVGSFRDSK-IIMKSVD----QFFLFN 329 (382)
Q Consensus 257 ~l~~~~g~-L~~~~~~~~~~~~~~~~~~~iW~l~~~~~-W~~~~~i~~~~~~~~~~~~~~g~-l~l~~~~----~~~~yd 329 (382)
.. .-+|+ |++. .. . ....+||.++-..+ +.++.. .. .......+..+|+ |++.... .++.+|
T Consensus 293 ~~-spDg~~i~f~-s~--~-----~g~~~iy~~d~~~g~~~~lt~-~~-~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~d 361 (430)
T PRK00178 293 FW-GKDGRTLYFT-SD--R-----GGKPQIYKVNVNGGRAERVTF-VG-NYNARPRLSADGKTLVMVHRQDGNFHVAAQD 361 (430)
T ss_pred EE-CCCCCEEEEE-EC--C-----CCCceEEEEECCCCCEEEeec-CC-CCccceEECCCCCEEEEEEccCCceEEEEEE
Confidence 11 23555 4444 33 1 33346666653323 544321 11 1122234455666 5555532 699999
Q ss_pred CCCCcEEEEe
Q 045675 330 PKTKRNFILP 339 (382)
Q Consensus 330 ~~t~~~~~v~ 339 (382)
+++++.+.+.
T Consensus 362 l~tg~~~~lt 371 (430)
T PRK00178 362 LQRGSVRILT 371 (430)
T ss_pred CCCCCEEEcc
Confidence 9999887764
No 139
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=40.73 E-value=2.8e+02 Score=25.21 Aligned_cols=147 Identities=9% Similarity=0.040 Sum_probs=68.7
Q ss_pred EEEeeCCCCCeEEEEEEeecCCCCCEEEEEECCCCCeeeecCCCCeeEEeCCcceEEECceEEEEeecccccccccEEEE
Q 045675 155 GFGFNQDTNDYVLVRIVNFQARYDAIAEVYSTSTGKWKEVAAGTGSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVS 234 (382)
Q Consensus 155 ~~g~d~~~~~ykvv~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~ 234 (382)
.+-|++ .+.+-+|.-. +..+.+|+..++.=+. ......+. ..+.+.+-.--|.++- +..|..
T Consensus 18 ~v~f~~-~~~~LLvssW------DgslrlYdv~~~~l~~--~~~~~~pl---L~c~F~d~~~~~~G~~------dg~vr~ 79 (323)
T KOG1036|consen 18 SVKFSP-SSSDLLVSSW------DGSLRLYDVPANSLKL--KFKHGAPL---LDCAFADESTIVTGGL------DGQVRR 79 (323)
T ss_pred eEEEcC-cCCcEEEEec------cCcEEEEeccchhhhh--heecCCce---eeeeccCCceEEEecc------CceEEE
Confidence 344554 3445554443 3489999988872111 11000111 1333444322233332 358999
Q ss_pred EECCCceeeEeCCCCCCCCCeeeEEE-eCCeEEEEEecCCCccCCCCCeEEEEEECCCCCeeEEEEeecCCcccceEEee
Q 045675 235 YDMNLELFWRTAMPELPTDCYVKALS-YDQSLALAVYPGLGFRSRLSNRFELWVMNEGKGWTRTFNTAFERIAWPVGSFR 313 (382)
Q Consensus 235 fD~~~~~~~~i~~P~~~~~~~~~l~~-~~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~W~~~~~i~~~~~~~~~~~~~ 313 (382)
+|+.+..=..+-.-.. .....+ .-+.=|++.+. . ...+.+|-.... ...-..+.. ....++.-
T Consensus 80 ~Dln~~~~~~igth~~----~i~ci~~~~~~~~vIsgs--W-----D~~ik~wD~R~~---~~~~~~d~~--kkVy~~~v 143 (323)
T KOG1036|consen 80 YDLNTGNEDQIGTHDE----GIRCIEYSYEVGCVISGS--W-----DKTIKFWDPRNK---VVVGTFDQG--KKVYCMDV 143 (323)
T ss_pred EEecCCcceeeccCCC----ceEEEEeeccCCeEEEcc--c-----CccEEEEecccc---ccccccccC--ceEEEEec
Confidence 9998765444422111 111111 11222334443 3 567888876632 011111111 12333333
Q ss_pred CCc-EEEEEcC-eEEEEeCCCCcE
Q 045675 314 DSK-IIMKSVD-QFFLFNPKTKRN 335 (382)
Q Consensus 314 ~g~-l~l~~~~-~~~~yd~~t~~~ 335 (382)
.|+ |++.+.+ ++++||++....
T Consensus 144 ~g~~LvVg~~~r~v~iyDLRn~~~ 167 (323)
T KOG1036|consen 144 SGNRLVVGTSDRKVLIYDLRNLDE 167 (323)
T ss_pred cCCEEEEeecCceEEEEEcccccc
Confidence 455 5554666 999999987753
No 140
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=39.37 E-value=97 Score=27.09 Aligned_cols=56 Identities=23% Similarity=0.207 Sum_probs=38.2
Q ss_pred ccCceEEEeeCCCCceeEEEEcccccceecc--CCCCCccccccceeEEEEEEEeeCCCCCeEEEEE
Q 045675 106 SCNGLLCLDVSSAFGMAFVLWNPATNEFKGL--PTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRI 170 (382)
Q Consensus 106 s~~Gll~~~~~~~~~~~~~V~NP~T~~~~~L--P~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~ 170 (382)
..+|.|..... ...+|-.||.|+.-..+ .+....... ..+++-|.|..++-+||.-
T Consensus 36 pa~G~LYgl~~---~g~lYtIn~~tG~aT~vg~s~~~~al~g------~~~gvDFNP~aDRlRvvs~ 93 (236)
T PF14339_consen 36 PANGQLYGLGS---TGRLYTINPATGAATPVGASPLTVALSG------TAFGVDFNPAADRLRVVSN 93 (236)
T ss_pred cCCCCEEEEeC---CCcEEEEECCCCeEEEeecccccccccC------ceEEEecCcccCcEEEEcc
Confidence 44787765544 45899999999997776 333222111 2567888899998888864
No 141
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=38.98 E-value=1.9e+02 Score=25.01 Aligned_cols=76 Identities=16% Similarity=0.159 Sum_probs=44.1
Q ss_pred eeEEEeCCeEEEEEecCCCccCCCCCeEEEEEECCCCCeeEEEEeecCCc--------------ccceEEeeCCcEE-EE
Q 045675 256 VKALSYDQSLALAVYPGLGFRSRLSNRFELWVMNEGKGWTRTFNTAFERI--------------AWPVGSFRDSKII-MK 320 (382)
Q Consensus 256 ~~l~~~~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~W~~~~~i~~~~~--------------~~~~~~~~~g~l~-l~ 320 (382)
......+|...++... ...+.||-+....- ....+++..+ +.-+.+.++|..+ ..
T Consensus 15 ~~~l~~~~~~Ll~iT~--------~G~l~vWnl~~~k~--~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l 84 (219)
T PF07569_consen 15 VSFLECNGSYLLAITS--------SGLLYVWNLKKGKA--VLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL 84 (219)
T ss_pred eEEEEeCCCEEEEEeC--------CCeEEEEECCCCee--ccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEE
Confidence 3334555554443333 67899999887611 1111221111 2334445677744 44
Q ss_pred EcCeEEEEeCCCCcEEEEeee
Q 045675 321 SVDQFFLFNPKTKRNFILPID 341 (382)
Q Consensus 321 ~~~~~~~yd~~t~~~~~v~~~ 341 (382)
.++..|.||..-+.|.+|...
T Consensus 85 sng~~y~y~~~L~~W~~vsd~ 105 (219)
T PF07569_consen 85 SNGDSYSYSPDLGCWIRVSDS 105 (219)
T ss_pred eCCCEEEeccccceeEEeccc
Confidence 445899999999999998654
No 142
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=38.95 E-value=3.1e+02 Score=25.15 Aligned_cols=94 Identities=15% Similarity=0.137 Sum_probs=50.2
Q ss_pred ceEEECceEEEEeecccccccccEEEEEECCCcee-eEeCCCCCCCCCeeeEEEeCCeE---EEEEecCCCccCCCCCeE
Q 045675 208 DAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELF-WRTAMPELPTDCYVKALSYDQSL---ALAVYPGLGFRSRLSNRF 283 (382)
Q Consensus 208 ~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~-~~i~~P~~~~~~~~~l~~~~g~L---~~~~~~~~~~~~~~~~~~ 283 (382)
.+|.++|-.-.-++. +..|-.||+.+..= ..+..+.. ........+.+ .++.+. +...+
T Consensus 47 tavAVs~~~~aSGss------DetI~IYDm~k~~qlg~ll~Hag----sitaL~F~~~~S~shLlS~s-------dDG~i 109 (362)
T KOG0294|consen 47 TALAVSGPYVASGSS------DETIHIYDMRKRKQLGILLSHAG----SITALKFYPPLSKSHLLSGS-------DDGHI 109 (362)
T ss_pred eEEEecceeEeccCC------CCcEEEEeccchhhhcceecccc----ceEEEEecCCcchhheeeec-------CCCcE
Confidence 677777764443333 36899999977533 22233321 12222222333 444444 36788
Q ss_pred EEEEECCCCCeeEEEEee-cCCcccceEEeeCCcEEEEE
Q 045675 284 ELWVMNEGKGWTRTFNTA-FERIAWPVGSFRDSKIIMKS 321 (382)
Q Consensus 284 ~iW~l~~~~~W~~~~~i~-~~~~~~~~~~~~~g~l~l~~ 321 (382)
.||..+. |+.+..+- -..-+.-+.++..|.|-+..
T Consensus 110 ~iw~~~~---W~~~~slK~H~~~Vt~lsiHPS~KLALsV 145 (362)
T KOG0294|consen 110 IIWRVGS---WELLKSLKAHKGQVTDLSIHPSGKLALSV 145 (362)
T ss_pred EEEEcCC---eEEeeeecccccccceeEecCCCceEEEE
Confidence 8887543 87777662 22225556666666654444
No 143
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=37.94 E-value=28 Score=25.56 Aligned_cols=25 Identities=24% Similarity=0.248 Sum_probs=22.5
Q ss_pred CCCCCCCHHHHHHHHhcCChhhhhh
Q 045675 7 TTVSSVPLVIITDILLQLPIKSIVR 31 (382)
Q Consensus 7 ~~~~~LP~dll~~IL~rLp~~sl~r 31 (382)
..|..||.|+-..||..|+-++|..
T Consensus 70 ~~w~~LP~EIk~~Il~~L~~~dL~~ 94 (97)
T PF09372_consen 70 NYWNILPIEIKYKILEYLSNKDLKK 94 (97)
T ss_pred CchhhCCHHHHHHHHHcCCHHHHHH
Confidence 6799999999999999999988754
No 144
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=37.76 E-value=3.5e+02 Score=25.45 Aligned_cols=104 Identities=10% Similarity=-0.027 Sum_probs=56.1
Q ss_pred eEEEEeecccccccccEEEEEECCCce-eeEeCCCCCCCCCeeeEE-EeCCeEEEEEecCCCccCCCCCeEEEEEECCCC
Q 045675 215 VLHWIANGIGVLVNEKFVVSYDMNLEL-FWRTAMPELPTDCYVKAL-SYDQSLALAVYPGLGFRSRLSNRFELWVMNEGK 292 (382)
Q Consensus 215 ~lywl~~~~~~~~~~~~i~~fD~~~~~-~~~i~~P~~~~~~~~~l~-~~~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~ 292 (382)
.++.+..++ ...+-..|..+.+ ...++.... ....+. .-||+..++... ...+.++-+...
T Consensus 6 ~l~~V~~~~-----~~~v~viD~~t~~~~~~i~~~~~---~h~~~~~s~Dgr~~yv~~r--------dg~vsviD~~~~- 68 (369)
T PF02239_consen 6 NLFYVVERG-----SGSVAVIDGATNKVVARIPTGGA---PHAGLKFSPDGRYLYVANR--------DGTVSVIDLATG- 68 (369)
T ss_dssp GEEEEEEGG-----GTEEEEEETTT-SEEEEEE-STT---EEEEEE-TT-SSEEEEEET--------TSEEEEEETTSS-
T ss_pred cEEEEEecC-----CCEEEEEECCCCeEEEEEcCCCC---ceeEEEecCCCCEEEEEcC--------CCeEEEEECCcc-
Confidence 344444444 3588889998754 355554432 122222 235664444333 457777777766
Q ss_pred CeeEEEEeecCCcccceEEeeCCcEEEEEc---CeEEEEeCCCCcEEE
Q 045675 293 GWTRTFNTAFERIAWPVGSFRDSKIIMKSV---DQFFLFNPKTKRNFI 337 (382)
Q Consensus 293 ~W~~~~~i~~~~~~~~~~~~~~g~l~l~~~---~~~~~yd~~t~~~~~ 337 (382)
..+.+|....-..-+++..+|+.+++.. +.+.++|.+|.+..+
T Consensus 69 --~~v~~i~~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~ 114 (369)
T PF02239_consen 69 --KVVATIKVGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVK 114 (369)
T ss_dssp --SEEEEEE-SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEE
T ss_pred --cEEEEEecCCCcceEEEcCCCCEEEEEecCCCceeEecccccccee
Confidence 4566676544445567777888554443 389999998876443
No 145
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=35.22 E-value=6.5e+02 Score=27.73 Aligned_cols=67 Identities=7% Similarity=0.031 Sum_probs=40.4
Q ss_pred EeCCeEEEEEecCCCccCCCCCeEEEEEECCCCCeeEEEEeec----------CCcccce--EEeeCCcEEEEEcC--eE
Q 045675 260 SYDQSLALAVYPGLGFRSRLSNRFELWVMNEGKGWTRTFNTAF----------ERIAWPV--GSFRDSKIIMKSVD--QF 325 (382)
Q Consensus 260 ~~~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~W~~~~~i~~----------~~~~~~~--~~~~~g~l~l~~~~--~~ 325 (382)
.-+|.|+++... ...+++|..+.. ....+..... ..+..|. ++..+|.||+.... .+
T Consensus 812 d~dG~LYVADs~--------N~rIrviD~~tg-~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~I 882 (1057)
T PLN02919 812 AKDGQIYVADSY--------NHKIKKLDPATK-RVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLI 882 (1057)
T ss_pred eCCCcEEEEECC--------CCEEEEEECCCC-eEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEE
Confidence 346788777665 678888877653 1221111110 1123454 44567888877754 88
Q ss_pred EEEeCCCCcE
Q 045675 326 FLFNPKTKRN 335 (382)
Q Consensus 326 ~~yd~~t~~~ 335 (382)
..+|+++++.
T Consensus 883 rvid~~~~~~ 892 (1057)
T PLN02919 883 RYLDLNKGEA 892 (1057)
T ss_pred EEEECCCCcc
Confidence 8999999875
No 146
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=35.07 E-value=1.8e+02 Score=25.70 Aligned_cols=87 Identities=15% Similarity=0.135 Sum_probs=54.4
Q ss_pred EEEEEECCCceeeEeCCCCCCCCCeeeEEEeCCeEEEEEecCCCccCCCCCeEEEEEECCCC---CeeEEE-EeecCCcc
Q 045675 231 FVVSYDMNLELFWRTAMPELPTDCYVKALSYDQSLALAVYPGLGFRSRLSNRFELWVMNEGK---GWTRTF-NTAFERIA 306 (382)
Q Consensus 231 ~i~~fD~~~~~~~~i~~P~~~~~~~~~l~~~~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~---~W~~~~-~i~~~~~~ 306 (382)
.-..||+.+++++.+.++...- ......--+|+|...+.. .. ....++++.....+ .|.... .|.....+
T Consensus 47 ~s~~yD~~tn~~rpl~v~td~F-CSgg~~L~dG~ll~tGG~--~~---G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWY 120 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLTVQTDTF-CSGGAFLPDGRLLQTGGD--ND---GNKAIRIFTPCTSDGTCDWTESPNDMQSGRWY 120 (243)
T ss_pred EEEEEecCCCcEEeccCCCCCc-ccCcCCCCCCCEEEeCCC--Cc---cccceEEEecCCCCCCCCceECcccccCCCcc
Confidence 3457999999999887765431 111122347898888776 32 34567776655421 298775 35544445
Q ss_pred cceEEeeCCcEEEEEcC
Q 045675 307 WPVGSFRDSKIIMKSVD 323 (382)
Q Consensus 307 ~~~~~~~~g~l~l~~~~ 323 (382)
.-.....+|+|+++.+.
T Consensus 121 pT~~~L~DG~vlIvGG~ 137 (243)
T PF07250_consen 121 PTATTLPDGRVLIVGGS 137 (243)
T ss_pred ccceECCCCCEEEEeCc
Confidence 55555678888877765
No 147
>PRK02889 tolB translocation protein TolB; Provisional
Probab=34.70 E-value=4.2e+02 Score=25.40 Aligned_cols=188 Identities=9% Similarity=0.000 Sum_probs=87.3
Q ss_pred eeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEECCCCCeeeecCCCCe
Q 045675 121 MAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYSTSTGKWKEVAAGTGS 200 (382)
Q Consensus 121 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~~ 200 (382)
..++++|..+++...+...+.. .....+.|.++. ++.... ......+.+++..++..+.+.....
T Consensus 220 ~~I~~~dl~~g~~~~l~~~~g~----------~~~~~~SPDG~~--la~~~~--~~g~~~Iy~~d~~~~~~~~lt~~~~- 284 (427)
T PRK02889 220 PVVYVHDLATGRRRVVANFKGS----------NSAPAWSPDGRT--LAVALS--RDGNSQIYTVNADGSGLRRLTQSSG- 284 (427)
T ss_pred cEEEEEECCCCCEEEeecCCCC----------ccceEECCCCCE--EEEEEc--cCCCceEEEEECCCCCcEECCCCCC-
Confidence 4688889888877666543321 113344554332 222221 1122355666666665554432211
Q ss_pred eEEeCCcceEEECce-EEEEeecccccccccEEEEEECCCceeeEeCCCCCCCCCeeeEEEeCCeEEEEEecCCCccCCC
Q 045675 201 CVIYGGQDAVAVKGV-LHWIANGIGVLVNEKFVVSYDMNLELFWRTAMPELPTDCYVKALSYDQSLALAVYPGLGFRSRL 279 (382)
Q Consensus 201 ~~~~~~~~~v~~~G~-lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~~~l~~~~g~L~~~~~~~~~~~~~~ 279 (382)
. .......-+|. +++.....+ ...|..+|+.++..+.+....... ..... .-+|+..++... .. .
T Consensus 285 --~-~~~~~wSpDG~~l~f~s~~~g----~~~Iy~~~~~~g~~~~lt~~g~~~-~~~~~-SpDG~~Ia~~s~--~~---g 350 (427)
T PRK02889 285 --I-DTEPFFSPDGRSIYFTSDRGG----APQIYRMPASGGAAQRVTFTGSYN-TSPRI-SPDGKLLAYISR--VG---G 350 (427)
T ss_pred --C-CcCeEEcCCCCEEEEEecCCC----CcEEEEEECCCCceEEEecCCCCc-CceEE-CCCCCEEEEEEc--cC---C
Confidence 0 11123334564 555544331 246888888877766654322110 11111 235654433333 10 1
Q ss_pred CCeEEEEEECCCCCeeEEEEeecCCcccceEEeeCCc-EEEEEcC----eEEEEeCCCCcEEEEeee
Q 045675 280 SNRFELWVMNEGKGWTRTFNTAFERIAWPVGSFRDSK-IIMKSVD----QFFLFNPKTKRNFILPID 341 (382)
Q Consensus 280 ~~~~~iW~l~~~~~W~~~~~i~~~~~~~~~~~~~~g~-l~l~~~~----~~~~yd~~t~~~~~v~~~ 341 (382)
...+.+|.++.. ....+. . ........+..+|. |++.... .++.++...+..+.+...
T Consensus 351 ~~~I~v~d~~~g-~~~~lt--~-~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~~~~~l~~~ 413 (427)
T PRK02889 351 AFKLYVQDLATG-QVTALT--D-TTRDESPSFAPNGRYILYATQQGGRSVLAAVSSDGRIKQRLSVQ 413 (427)
T ss_pred cEEEEEEECCCC-CeEEcc--C-CCCccCceECCCCCEEEEEEecCCCEEEEEEECCCCceEEeecC
Confidence 234555555443 222221 1 11122234556776 5555543 588888866555555433
No 148
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=34.16 E-value=5.7e+02 Score=26.76 Aligned_cols=93 Identities=16% Similarity=0.285 Sum_probs=53.7
Q ss_pred EEEEEECCCceeeE---eCCCCCCCCCeeeEEE--eCCeEEEEEecCCCccCCCCCeEEEEEECCCCC-------eeEEE
Q 045675 231 FVVSYDMNLELFWR---TAMPELPTDCYVKALS--YDQSLALAVYPGLGFRSRLSNRFELWVMNEGKG-------WTRTF 298 (382)
Q Consensus 231 ~i~~fD~~~~~~~~---i~~P~~~~~~~~~l~~--~~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~-------W~~~~ 298 (382)
..-.|+..+..|.. |..|.+.. ...... .-.+...+... ....+.||.+.+++. |....
T Consensus 433 KFW~~n~~~kt~~L~T~I~~PH~~~--~vat~~~~~~rs~~~vta~-------~dg~~KiW~~~~~~n~~k~~s~W~c~~ 503 (792)
T KOG1963|consen 433 KFWQYNPNSKTFILNTKINNPHGNA--FVATIFLNPTRSVRCVTAS-------VDGDFKIWVFTDDSNIYKKSSNWTCKA 503 (792)
T ss_pred EEEEEcCCcceeEEEEEEecCCCce--eEEEEEecCcccceeEEec-------cCCeEEEEEEecccccCcCccceEEee
Confidence 55667777777753 47776542 222111 11121233332 267899999965421 99775
Q ss_pred EeecCCc-ccceEEeeCCcEEEEE-cCeEEEEeCCC
Q 045675 299 NTAFERI-AWPVGSFRDSKIIMKS-VDQFFLFNPKT 332 (382)
Q Consensus 299 ~i~~~~~-~~~~~~~~~g~l~l~~-~~~~~~yd~~t 332 (382)
.=.+... ....++..+|.++.+. ++.+..||..+
T Consensus 504 i~sy~k~~i~a~~fs~dGslla~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 504 IGSYHKTPITALCFSQDGSLLAVSFDDTITIWDYDT 539 (792)
T ss_pred eeccccCcccchhhcCCCcEEEEecCCEEEEecCCC
Confidence 3333222 4445566778876555 45899999988
No 149
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=34.00 E-value=2.2e+02 Score=28.70 Aligned_cols=64 Identities=9% Similarity=0.055 Sum_probs=43.6
Q ss_pred ceEEEEeecccccccccEEEEEECCCceee----EeCCCCCCCCCeeeEEEeCCeEEEEEecCCCccCCCCCeEEEEEEC
Q 045675 214 GVLHWIANGIGVLVNEKFVVSYDMNLELFW----RTAMPELPTDCYVKALSYDQSLALAVYPGLGFRSRLSNRFELWVMN 289 (382)
Q Consensus 214 G~lywl~~~~~~~~~~~~i~~fD~~~~~~~----~i~~P~~~~~~~~~l~~~~g~L~~~~~~~~~~~~~~~~~~~iW~l~ 289 (382)
-.||.....+ .|.-||.....|+ .+.-|..-....+.+....|..+++... +..+++.|.++
T Consensus 65 HiLavadE~G-------~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsas-------GDsT~r~Wdvk 130 (720)
T KOG0321|consen 65 HILAVADEDG-------GIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSAS-------GDSTIRPWDVK 130 (720)
T ss_pred ceEEEecCCC-------ceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEcc-------CCceeeeeeec
Confidence 3455554444 8888999988887 1222222212456666667999999997 48899999999
Q ss_pred CC
Q 045675 290 EG 291 (382)
Q Consensus 290 ~~ 291 (382)
..
T Consensus 131 ~s 132 (720)
T KOG0321|consen 131 TS 132 (720)
T ss_pred cc
Confidence 86
No 150
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=33.96 E-value=1.5e+02 Score=26.13 Aligned_cols=77 Identities=12% Similarity=0.086 Sum_probs=0.0
Q ss_pred CCeEEEEEecCCCccCCCCCeEEEEEECCCCC-------eeEEEEeecCCc----ccceEEe-eCCcEEEEEcC-eEEEE
Q 045675 262 DQSLALAVYPGLGFRSRLSNRFELWVMNEGKG-------WTRTFNTAFERI----AWPVGSF-RDSKIIMKSVD-QFFLF 328 (382)
Q Consensus 262 ~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~-------W~~~~~i~~~~~----~~~~~~~-~~g~l~l~~~~-~~~~y 328 (382)
+|-++.+...+..--......+.=|..++... |+..-.+....+ +..+.+. ..+.|+++.++ .++..
T Consensus 62 dgpiy~~~f~d~~Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~ 141 (325)
T KOG0649|consen 62 DGPIYYLAFHDDFLLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQV 141 (325)
T ss_pred CCCeeeeeeehhheeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEE
Q ss_pred eCCCCcEEEE
Q 045675 329 NPKTKRNFIL 338 (382)
Q Consensus 329 d~~t~~~~~v 338 (382)
|++++++++.
T Consensus 142 dlE~G~i~r~ 151 (325)
T KOG0649|consen 142 DLEDGRIQRE 151 (325)
T ss_pred EecCCEEEEE
No 151
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=33.66 E-value=3.8e+02 Score=24.62 Aligned_cols=107 Identities=9% Similarity=0.129 Sum_probs=53.4
Q ss_pred EEeeCCCCCeEEEEEEeecCCCCCEEEEEECCCCC-eeeecCCCCeeEEeCCcceEEECceEEEEeecccccccccEEEE
Q 045675 156 FGFNQDTNDYVLVRIVNFQARYDAIAEVYSTSTGK-WKEVAAGTGSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVS 234 (382)
Q Consensus 156 ~g~d~~~~~ykvv~~~~~~~~~~~~~~vyss~t~~-W~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~ 234 (382)
+-+++. ++|.+|.+.. .+.||.+++-+ -+++..+ ... .++-+++|.-..++.++ ..|..
T Consensus 174 v~w~~~-Gd~F~v~~~~-------~i~i~q~d~A~v~~~i~~~--~r~----l~~~~l~~~~L~vG~d~------~~i~~ 233 (362)
T KOG0294|consen 174 VSWSPQ-GDHFVVSGRN-------KIDIYQLDNASVFREIENP--KRI----LCATFLDGSELLVGGDN------EWISL 233 (362)
T ss_pred eEEcCC-CCEEEEEecc-------EEEEEecccHhHhhhhhcc--ccc----eeeeecCCceEEEecCC------ceEEE
Confidence 455654 4444555444 79999988643 3333332 111 24555666555555444 47888
Q ss_pred EECCCceeeEe-CC-CCCCCCCeeeEEEeCCeEEEEEecCCCccCCCCCeEEEEEECCC
Q 045675 235 YDMNLELFWRT-AM-PELPTDCYVKALSYDQSLALAVYPGLGFRSRLSNRFELWVMNEG 291 (382)
Q Consensus 235 fD~~~~~~~~i-~~-P~~~~~~~~~l~~~~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~ 291 (382)
+|..+...-.. .. +.+. ..+....-...-+++... ....+.||.++..
T Consensus 234 ~D~ds~~~~~~~~AH~~RV--K~i~~~~~~~~~~lvTaS-------SDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 234 KDTDSDTPLTEFLAHENRV--KDIASYTNPEHEYLVTAS-------SDGFIKVWDIDME 283 (362)
T ss_pred eccCCCccceeeecchhhe--eeeEEEecCCceEEEEec-------cCceEEEEEcccc
Confidence 88876332221 11 1111 111111112223444443 3678888887754
No 152
>cd00837 EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. The EVH1 domain binds to other proteins at proline rich sequences in either FPPPP or PPXXF motifs. It is found in the cytoskeletal reorganization proteins Enabled VASP, and WASP, and in the synaptic scaffolding protein Homer. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=33.24 E-value=1.9e+02 Score=21.56 Aligned_cols=41 Identities=10% Similarity=0.080 Sum_probs=30.0
Q ss_pred eeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEe
Q 045675 121 MAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVN 172 (382)
Q Consensus 121 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~ 172 (382)
..++..+|.+++|...- ... ..+.+..|+..+.|.++..-.
T Consensus 9 a~v~~~~~~~~~W~~~~-~~~----------g~v~~~~d~~~~~y~i~~~~~ 49 (104)
T cd00837 9 AQVYTADPSTGKWVPAS-GGT----------GAVSLVKDSTRNTYRIRGVDI 49 (104)
T ss_pred EEEEEECCCCCceEECC-CCe----------EEEEEEEECCCCEEEEEEEec
Confidence 47899999999998643 111 356788898888898887754
No 153
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=32.74 E-value=3e+02 Score=23.17 Aligned_cols=93 Identities=12% Similarity=0.040 Sum_probs=47.2
Q ss_pred cEEEEEECCCcee-eEeCCCCCCCCCeeeEEE-eCCeEEEEEecCCCccCCCCCeEEEEEECCCCCeeEEEEe-ecCCcc
Q 045675 230 KFVVSYDMNLELF-WRTAMPELPTDCYVKALS-YDQSLALAVYPGLGFRSRLSNRFELWVMNEGKGWTRTFNT-AFERIA 306 (382)
Q Consensus 230 ~~i~~fD~~~~~~-~~i~~P~~~~~~~~~l~~-~~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~W~~~~~i-~~~~~~ 306 (382)
..|..+|+.+.+. ..+..... ....+.. -+|...++... ...+.+|.+... ..+..+ ......
T Consensus 157 ~~i~i~d~~~~~~~~~~~~~~~---~i~~~~~~~~~~~l~~~~~--------~~~i~i~d~~~~---~~~~~~~~~~~~i 222 (289)
T cd00200 157 GTIKLWDLRTGKCVATLTGHTG---EVNSVAFSPDGEKLLSSSS--------DGTIKLWDLSTG---KCLGTLRGHENGV 222 (289)
T ss_pred CcEEEEEccccccceeEecCcc---ccceEEECCCcCEEEEecC--------CCcEEEEECCCC---ceecchhhcCCce
Confidence 3788888875433 22332211 1122222 24434444443 567888888654 222222 111123
Q ss_pred cceEEeeCCcEEEEEc-C-eEEEEeCCCCcEE
Q 045675 307 WPVGSFRDSKIIMKSV-D-QFFLFNPKTKRNF 336 (382)
Q Consensus 307 ~~~~~~~~g~l~l~~~-~-~~~~yd~~t~~~~ 336 (382)
..+.+..++.+++... + .+..||.++++..
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~ 254 (289)
T cd00200 223 NSVAFSPDGYLLASGSEDGTIRVWDLRTGECV 254 (289)
T ss_pred EEEEEcCCCcEEEEEcCCCcEEEEEcCCceeE
Confidence 3344455566666664 4 8999999876543
No 154
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=31.35 E-value=3.1e+02 Score=24.43 Aligned_cols=64 Identities=13% Similarity=-0.059 Sum_probs=39.9
Q ss_pred ceEEECceEEEEeecccccccccEEEEEECCCceeeEeCCCCCCCCCeeeEEEeCCeEEEEEec
Q 045675 208 DAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRTAMPELPTDCYVKALSYDQSLALAVYP 271 (382)
Q Consensus 208 ~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~~~l~~~~g~L~~~~~~ 271 (382)
+.-+.+|+||..........-.-.+...+...+.|+.+..|........-....++.|+++...
T Consensus 195 CvkyY~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~slrfp~nvHhtnlPFakvgD~l~mFgsE 258 (367)
T PF12217_consen 195 CVKYYDGVLYLTTRGTLPTNPGSSLHRSDDNGQNWSSLRFPNNVHHTNLPFAKVGDVLYMFGSE 258 (367)
T ss_dssp EEEEETTEEEEEEEES-TTS---EEEEESSTTSS-EEEE-TT---SS---EEEETTEEEEEEE-
T ss_pred hhhhhCCEEEEEEcCcCCCCCcceeeeecccCCchhhccccccccccCCCceeeCCEEEEEecc
Confidence 4558899999887544221112366777888899999999987765666778889999999986
No 155
>PRK02889 tolB translocation protein TolB; Provisional
Probab=29.96 E-value=5e+02 Score=24.86 Aligned_cols=198 Identities=13% Similarity=0.034 Sum_probs=92.7
Q ss_pred ceEEEeeCCCCceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEECCC
Q 045675 109 GLLCLDVSSAFGMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYSTST 188 (382)
Q Consensus 109 Gll~~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vyss~t 188 (382)
+.+...........++++|...+....+-..... .....+.|.++....+ .. ......+.+++..+
T Consensus 164 ~~iayv~~~~~~~~L~~~D~dG~~~~~l~~~~~~----------v~~p~wSPDG~~la~~--s~--~~~~~~I~~~dl~~ 229 (427)
T PRK02889 164 TRIAYVIKTGNRYQLQISDADGQNAQSALSSPEP----------IISPAWSPDGTKLAYV--SF--ESKKPVVYVHDLAT 229 (427)
T ss_pred cEEEEEEccCCccEEEEECCCCCCceEeccCCCC----------cccceEcCCCCEEEEE--Ec--cCCCcEEEEEECCC
Confidence 5554433321145688888855444444322211 1233445544222211 11 11234677788776
Q ss_pred CCeeeecCCCCeeEEeCCcceEEECc-eEEEEeecccccccccEEEEEECCCceeeEeCCCCCCCCCeeeEEEeCCeEEE
Q 045675 189 GKWKEVAAGTGSCVIYGGQDAVAVKG-VLHWIANGIGVLVNEKFVVSYDMNLELFWRTAMPELPTDCYVKALSYDQSLAL 267 (382)
Q Consensus 189 ~~W~~~~~~~~~~~~~~~~~~v~~~G-~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~~~l~~~~g~L~~ 267 (382)
+.=+.+...... . ......-+| .+.+....+. ...|..+|+.+...+.+.-.... ..... -.-||+..+
T Consensus 230 g~~~~l~~~~g~--~--~~~~~SPDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~lt~~~~~-~~~~~-wSpDG~~l~ 299 (427)
T PRK02889 230 GRRRVVANFKGS--N--SAPAWSPDGRTLAVALSRDG----NSQIYTVNADGSGLRRLTQSSGI-DTEPF-FSPDGRSIY 299 (427)
T ss_pred CCEEEeecCCCC--c--cceEECCCCCEEEEEEccCC----CceEEEEECCCCCcEECCCCCCC-CcCeE-EcCCCCEEE
Confidence 642222211110 0 012233355 3444433331 34788888877765554221111 11111 223666444
Q ss_pred EEecCCCccCCCCCeEEEEEECCCCC-eeEEEEeecCCcccceEEeeCCc-EEEEEcC----eEEEEeCCCCcEEEEe
Q 045675 268 AVYPGLGFRSRLSNRFELWVMNEGKG-WTRTFNTAFERIAWPVGSFRDSK-IIMKSVD----QFFLFNPKTKRNFILP 339 (382)
Q Consensus 268 ~~~~~~~~~~~~~~~~~iW~l~~~~~-W~~~~~i~~~~~~~~~~~~~~g~-l~l~~~~----~~~~yd~~t~~~~~v~ 339 (382)
+... . ....+||.++...+ ..++. ... .......+..+|+ |++.... .++.+|+.+++.+.+.
T Consensus 300 f~s~--~-----~g~~~Iy~~~~~~g~~~~lt-~~g-~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt 368 (427)
T PRK02889 300 FTSD--R-----GGAPQIYRMPASGGAAQRVT-FTG-SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALT 368 (427)
T ss_pred EEec--C-----CCCcEEEEEECCCCceEEEe-cCC-CCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEcc
Confidence 4443 2 34568999875423 33332 111 1122234556776 5555433 6999999999887763
No 156
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=29.67 E-value=4.8e+02 Score=24.55 Aligned_cols=187 Identities=12% Similarity=-0.014 Sum_probs=88.8
Q ss_pred ceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEECCCCCeeeecCCCC
Q 045675 120 GMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYSTSTGKWKEVAAGTG 199 (382)
Q Consensus 120 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~ 199 (382)
...+++++...++.+.|-..... .....+.|.. .+.++.... .....+.+++..++.-+.......
T Consensus 169 ~~~l~~~d~~g~~~~~l~~~~~~----------~~~p~~Spdg-~~la~~~~~---~~~~~i~v~d~~~g~~~~~~~~~~ 234 (417)
T TIGR02800 169 RYELQVADYDGANPQTITRSREP----------ILSPAWSPDG-QKLAYVSFE---SGKPEIYVQDLATGQREKVASFPG 234 (417)
T ss_pred cceEEEEcCCCCCCEEeecCCCc----------eecccCCCCC-CEEEEEEcC---CCCcEEEEEECCCCCEEEeecCCC
Confidence 44688888865554444332211 1122344433 333222211 123578888888876554433211
Q ss_pred eeEEeCCcceEEECce-EEEEeecccccccccEEEEEECCCceeeEeCCCCCCCCCeeeEEEeCCeEEEEEecCCCccCC
Q 045675 200 SCVIYGGQDAVAVKGV-LHWIANGIGVLVNEKFVVSYDMNLELFWRTAMPELPTDCYVKALSYDQSLALAVYPGLGFRSR 278 (382)
Q Consensus 200 ~~~~~~~~~~v~~~G~-lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~~~l~~~~g~L~~~~~~~~~~~~~ 278 (382)
.. . .....-+|. +++..... ....|..+|+.+.....+...... ...... .-+|+..++... .
T Consensus 235 ~~-~---~~~~spDg~~l~~~~~~~----~~~~i~~~d~~~~~~~~l~~~~~~-~~~~~~-s~dg~~l~~~s~--~---- 298 (417)
T TIGR02800 235 MN-G---APAFSPDGSKLAVSLSKD----GNPDIYVMDLDGKQLTRLTNGPGI-DTEPSW-SPDGKSIAFTSD--R---- 298 (417)
T ss_pred Cc-c---ceEECCCCCEEEEEECCC----CCccEEEEECCCCCEEECCCCCCC-CCCEEE-CCCCCEEEEEEC--C----
Confidence 10 0 122333553 54443332 124688899988877665221111 011111 125654433333 2
Q ss_pred CCCeEEEEEECCCCC-eeEEEEeecCCcccceEEeeCCc-EEEEEcC----eEEEEeCCCCcEEEEe
Q 045675 279 LSNRFELWVMNEGKG-WTRTFNTAFERIAWPVGSFRDSK-IIMKSVD----QFFLFNPKTKRNFILP 339 (382)
Q Consensus 279 ~~~~~~iW~l~~~~~-W~~~~~i~~~~~~~~~~~~~~g~-l~l~~~~----~~~~yd~~t~~~~~v~ 339 (382)
....+||.++-..+ +.++.. .... .....+..+|+ |++...+ .++.||+.++.++.+.
T Consensus 299 -~g~~~iy~~d~~~~~~~~l~~-~~~~-~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~ 362 (417)
T TIGR02800 299 -GGSPQIYMMDADGGEVRRLTF-RGGY-NASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLT 362 (417)
T ss_pred -CCCceEEEEECCCCCEEEeec-CCCC-ccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEcc
Confidence 22346666654323 443221 1111 22234455666 4454443 7999999998777664
No 157
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.62 E-value=3e+02 Score=29.16 Aligned_cols=57 Identities=16% Similarity=0.337 Sum_probs=36.2
Q ss_pred CCCeEEEEEECCCCCeeEEE-EeecCCcccceEEeeCCcEEEEEcC--eEEEEeCCCCcEE
Q 045675 279 LSNRFELWVMNEGKGWTRTF-NTAFERIAWPVGSFRDSKIIMKSVD--QFFLFNPKTKRNF 336 (382)
Q Consensus 279 ~~~~~~iW~l~~~~~W~~~~-~i~~~~~~~~~~~~~~g~l~l~~~~--~~~~yd~~t~~~~ 336 (382)
+...+.+|.|.+...|+.-- +=-... +..+-++...++++.... .+-+||+..++--
T Consensus 226 DDRqVKlWrmnetKaWEvDtcrgH~nn-Vssvlfhp~q~lIlSnsEDksirVwDm~kRt~v 285 (1202)
T KOG0292|consen 226 DDRQVKLWRMNETKAWEVDTCRGHYNN-VSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSV 285 (1202)
T ss_pred CcceeeEEEeccccceeehhhhcccCC-cceEEecCccceeEecCCCccEEEEecccccce
Confidence 37789999999995598652 222222 223334455567776654 7778888776533
No 158
>PF00568 WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1, RanBP1-WASP) domain is found in multi-domain proteins implicated in a diverse range of signalling, nuclear transport and cytoskeletal events. This domain of around 115 amino acids is present in species ranging from yeast to mammals. Many EVH1-containing proteins associate with actin-based structures and play a role in cytoskeletal organisation. EVH1 domains recognise and bind the proline-rich motif FPPPP with low-affinity, further interactions then form between flanking residues [][]. WASP family proteins contain a EVH1 (WH1) in their N-terminals which bind proline-rich sequences in the WASP interacting protein. Proteins of the RanBP1 family contain a WH1 domain in their N-terminal region, which seems to bind a different sequence motif present in the C-terminal part of RanGTP protein [,]. Tertiary structure of the WH1 domain of the Mena protein revealed structure similarities with the pleckstrin homology (PH) domain. The overall fold consists of a compact parallel beta-sandwich, closed along one edge by a long alpha-helix. A highly conserved cluster of three surface-exposed aromatic side-chains forms the recognition site for the molecules target ligands. [].; GO: 0005515 protein binding; PDB: 1I2H_A 1DDV_A 1DDW_A 1EGX_A 3SYX_A 1TJ6_B 1XOD_B 1EVH_A 1I7A_B 2JP2_A ....
Probab=29.39 E-value=1.2e+02 Score=22.83 Aligned_cols=39 Identities=10% Similarity=0.056 Sum_probs=28.9
Q ss_pred eeEEEEcccccc-eeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEE
Q 045675 121 MAFVLWNPATNE-FKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIV 171 (382)
Q Consensus 121 ~~~~V~NP~T~~-~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~ 171 (382)
..++.+||.+++ |... .. . ..+.+..|...+.|+|+.+.
T Consensus 16 A~v~~~~p~~~~~W~~~---~~-------~--g~v~~v~d~~~~~y~I~~~~ 55 (111)
T PF00568_consen 16 AQVYQADPDTKRQWSPV---KG-------T--GVVCFVKDNSRRSYFIRLYD 55 (111)
T ss_dssp EEEEEEETTTSESEEES---SS-------E--EEEEEEEETTTTEEEEEEEE
T ss_pred EEEEEEEcCCCCcEeeC---Ce-------E--EEEEEEEECCCCEEEEEEEE
Confidence 478999999888 9876 11 0 35567788888889888775
No 159
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=29.31 E-value=4.3e+02 Score=23.87 Aligned_cols=111 Identities=11% Similarity=0.237 Sum_probs=61.8
Q ss_pred ceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEECCCCCeeeecCC--
Q 045675 120 GMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYSTSTGKWKEVAAG-- 197 (382)
Q Consensus 120 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vyss~t~~W~~~~~~-- 197 (382)
...+|+||+.+.||..+-..-.. ....+.+. ..++-.|.+-+.........+..|+..+.+|......
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G---------~V~~l~~~-~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s 84 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISG---------TVTDLQWA-SNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSS 84 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceE---------EEEEEEEe-cCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCccc
Confidence 34789999999999987655211 23344444 2233333333332222456899999999999877662
Q ss_pred ---CCeeEEeCCcceEEECceEEEEeecccccccccEEEEEECCCceeeEeCC
Q 045675 198 ---TGSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRTAM 247 (382)
Q Consensus 198 ---~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~ 247 (382)
+.+... -....-++.=.|+.+... .....|..|| ..+|+.+..
T Consensus 85 ~~ipgpv~a---~~~~~~d~~~~~~aG~~~--~g~~~l~~~d--Gs~W~~i~~ 130 (281)
T PF12768_consen 85 NSIPGPVTA---LTFISNDGSNFWVAGRSA--NGSTFLMKYD--GSSWSSIGS 130 (281)
T ss_pred ccCCCcEEE---EEeeccCCceEEEeceec--CCCceEEEEc--CCceEeccc
Confidence 222111 112222444455444421 1235788885 557888755
No 160
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=28.71 E-value=4.9e+02 Score=24.29 Aligned_cols=134 Identities=13% Similarity=0.132 Sum_probs=69.7
Q ss_pred EEEEEECCCCC--eeeecCCCCeeEEeCCcceEEECceEEEEeecccccccccEEEEEECC--CceeeEeCCCCCCCCCe
Q 045675 180 IAEVYSTSTGK--WKEVAAGTGSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMN--LELFWRTAMPELPTDCY 255 (382)
Q Consensus 180 ~~~vyss~t~~--W~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~--~~~~~~i~~P~~~~~~~ 255 (382)
.+.-++..++. |+..... ..... . .+.++.+|++|.-...+ .+.+||.. ++.|+. ..+.. ....
T Consensus 79 ~i~A~d~~~g~~~W~~~~~~-~~~~~-~-~~~~~~~G~i~~g~~~g-------~~y~ld~~~G~~~W~~-~~~~~-~~~~ 146 (370)
T COG1520 79 NIFALNPDTGLVKWSYPLLG-AVAQL-S-GPILGSDGKIYVGSWDG-------KLYALDASTGTLVWSR-NVGGS-PYYA 146 (370)
T ss_pred cEEEEeCCCCcEEecccCcC-cceec-c-CceEEeCCeEEEecccc-------eEEEEECCCCcEEEEE-ecCCC-eEEe
Confidence 45556666654 8764442 00111 1 24555589988866554 79999995 345543 33320 0011
Q ss_pred eeEEEeCCeEEEEEecCCCccCCCCCeEEEEEECCCCC---eeEEEEe--ecCCcccceEEeeCCcEEEEEc--C-eEEE
Q 045675 256 VKALSYDQSLALAVYPGLGFRSRLSNRFELWVMNEGKG---WTRTFNT--AFERIAWPVGSFRDSKIIMKSV--D-QFFL 327 (382)
Q Consensus 256 ~~l~~~~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~---W~~~~~i--~~~~~~~~~~~~~~g~l~l~~~--~-~~~~ 327 (382)
-..+..+|.+++.... . .+..++...| |...... +......|. ..++.+|+... + .++.
T Consensus 147 ~~~v~~~~~v~~~s~~---------g--~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~--~~~~~vy~~~~~~~~~~~a 213 (370)
T COG1520 147 SPPVVGDGTVYVGTDD---------G--HLYALNADTGTLKWTYETPAPLSLSIYGSPA--IASGTVYVGSDGYDGILYA 213 (370)
T ss_pred cCcEEcCcEEEEecCC---------C--eEEEEEccCCcEEEEEecCCccccccccCce--eecceEEEecCCCcceEEE
Confidence 1123445555544321 1 3334444333 7755432 322223444 34566777666 4 7999
Q ss_pred EeCCCCcEEEE
Q 045675 328 FNPKTKRNFIL 338 (382)
Q Consensus 328 yd~~t~~~~~v 338 (382)
+|+++++...-
T Consensus 214 ~~~~~G~~~w~ 224 (370)
T COG1520 214 LNAEDGTLKWS 224 (370)
T ss_pred EEccCCcEeee
Confidence 99988876554
No 161
>PRK03629 tolB translocation protein TolB; Provisional
Probab=28.15 E-value=5.4e+02 Score=24.67 Aligned_cols=187 Identities=13% Similarity=0.068 Sum_probs=87.4
Q ss_pred ceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEECCCCCeeeecCCCC
Q 045675 120 GMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYSTSTGKWKEVAAGTG 199 (382)
Q Consensus 120 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~ 199 (382)
...++++|..+++...|-..+.. .....+.|.+. +-++ ... ......+.+++..++..+.+.....
T Consensus 222 ~~~i~i~dl~~G~~~~l~~~~~~----------~~~~~~SPDG~-~La~-~~~--~~g~~~I~~~d~~tg~~~~lt~~~~ 287 (429)
T PRK03629 222 RSALVIQTLANGAVRQVASFPRH----------NGAPAFSPDGS-KLAF-ALS--KTGSLNLYVMDLASGQIRQVTDGRS 287 (429)
T ss_pred CcEEEEEECCCCCeEEccCCCCC----------cCCeEECCCCC-EEEE-EEc--CCCCcEEEEEECCCCCEEEccCCCC
Confidence 34678888888876665433221 01234455432 2222 111 1122357778888776665543211
Q ss_pred eeEEeCCcceEEECce-EEEEeecccccccccEEEEEECCCceeeEeCCCCCCCCCeeeEEEeCCeEEEEEecCCCccCC
Q 045675 200 SCVIYGGQDAVAVKGV-LHWIANGIGVLVNEKFVVSYDMNLELFWRTAMPELPTDCYVKALSYDQSLALAVYPGLGFRSR 278 (382)
Q Consensus 200 ~~~~~~~~~~v~~~G~-lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~~~l~~~~g~L~~~~~~~~~~~~~ 278 (382)
. . ......-+|. +++...... ...|..+|+.+.....+....... ....+ .-+|+..++... .
T Consensus 288 ~--~--~~~~wSPDG~~I~f~s~~~g----~~~Iy~~d~~~g~~~~lt~~~~~~-~~~~~-SpDG~~Ia~~~~--~---- 351 (429)
T PRK03629 288 N--N--TEPTWFPDSQNLAYTSDQAG----RPQVYKVNINGGAPQRITWEGSQN-QDADV-SSDGKFMVMVSS--N---- 351 (429)
T ss_pred C--c--CceEECCCCCEEEEEeCCCC----CceEEEEECCCCCeEEeecCCCCc-cCEEE-CCCCCEEEEEEc--c----
Confidence 0 0 0122233454 555544331 236788888877666553222110 11111 235654444333 1
Q ss_pred CCCeEEEEEECCCCC-eeEEEEeecCCcccceEEeeCCc-EEEEEcC----eEEEEeCCCCcEEEEee
Q 045675 279 LSNRFELWVMNEGKG-WTRTFNTAFERIAWPVGSFRDSK-IIMKSVD----QFFLFNPKTKRNFILPI 340 (382)
Q Consensus 279 ~~~~~~iW~l~~~~~-W~~~~~i~~~~~~~~~~~~~~g~-l~l~~~~----~~~~yd~~t~~~~~v~~ 340 (382)
....+||.++-..+ +..+.. ......| .+..+|. |++...+ .+...++..+..+++.-
T Consensus 352 -~g~~~I~~~dl~~g~~~~Lt~--~~~~~~p-~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~~~l~~ 415 (429)
T PRK03629 352 -GGQQHIAKQDLATGGVQVLTD--TFLDETP-SIAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPA 415 (429)
T ss_pred -CCCceEEEEECCCCCeEEeCC--CCCCCCc-eECCCCCEEEEEEcCCCceEEEEEECCCCCeEECcc
Confidence 22334555443222 443321 1111233 3456777 5555543 47777887777666643
No 162
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=27.10 E-value=3.9e+02 Score=25.03 Aligned_cols=56 Identities=14% Similarity=0.239 Sum_probs=39.0
Q ss_pred CCeEEEEEECCCCCeeEEEEe-ecCCcccceEEeeCCcEEEEE-cC-eEEEEeCCCCcEEEE
Q 045675 280 SNRFELWVMNEGKGWTRTFNT-AFERIAWPVGSFRDSKIIMKS-VD-QFFLFNPKTKRNFIL 338 (382)
Q Consensus 280 ~~~~~iW~l~~~~~W~~~~~i-~~~~~~~~~~~~~~g~l~l~~-~~-~~~~yd~~t~~~~~v 338 (382)
...+.+|.+.-. ..+.++ .....++.+++..+|.-++.+ ++ .+-+||+++++-.+.
T Consensus 313 DktIk~wdv~tg---~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~ 371 (406)
T KOG0295|consen 313 DKTIKIWDVSTG---MCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKT 371 (406)
T ss_pred cceEEEEeccCC---eEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeec
Confidence 778999998876 334444 344557778888888855444 44 899999998874443
No 163
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=26.80 E-value=4.1e+02 Score=26.07 Aligned_cols=27 Identities=4% Similarity=0.138 Sum_probs=16.9
Q ss_pred ceEEeeCCcEEEEEcC--eEEEEeCCCCc
Q 045675 308 PVGSFRDSKIIMKSVD--QFFLFNPKTKR 334 (382)
Q Consensus 308 ~~~~~~~g~l~l~~~~--~~~~yd~~t~~ 334 (382)
.+++.++|-++..... +++.||++..+
T Consensus 255 tvaf~~~G~~L~aG~s~G~~i~YD~R~~k 283 (673)
T KOG4378|consen 255 TVAFSECGTYLCAGNSKGELIAYDMRSTK 283 (673)
T ss_pred eeeecCCceEEEeecCCceEEEEecccCC
Confidence 3455556654444433 88899988765
No 164
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=26.78 E-value=2.4e+02 Score=25.97 Aligned_cols=54 Identities=13% Similarity=0.054 Sum_probs=41.1
Q ss_pred cceEEECceEEEEeecccccccccEEEEEECCCceeeEe-CCCCCCCCCeeeEEEeCCeEEEEEec
Q 045675 207 QDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRT-AMPELPTDCYVKALSYDQSLALAVYP 271 (382)
Q Consensus 207 ~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P~~~~~~~~~l~~~~g~L~~~~~~ 271 (382)
+++-..+|++|.+.... ..+..+|+.++++..+ .+|.... .|+-. |.+.+++..
T Consensus 206 hSPRWhdgrLwvldsgt------Gev~~vD~~~G~~e~Va~vpG~~r----GL~f~-G~llvVgmS 260 (335)
T TIGR03032 206 HSPRWYQGKLWLLNSGR------GELGYVDPQAGKFQPVAFLPGFTR----GLAFA-GDFAFVGLS 260 (335)
T ss_pred cCCcEeCCeEEEEECCC------CEEEEEcCCCCcEEEEEECCCCCc----cccee-CCEEEEEec
Confidence 57778899999987654 5899999999999887 7776442 33333 888888887
No 165
>PTZ00420 coronin; Provisional
Probab=26.57 E-value=4.7e+02 Score=26.37 Aligned_cols=66 Identities=6% Similarity=0.163 Sum_probs=0.0
Q ss_pred CCeEEEEEecCCCccCCCCCeEEEEEECCCCCeeEEEEeecCCcccceEEeeCCcEEEEEcC--eEEEEeCCCCcEEE
Q 045675 262 DQSLALAVYPGLGFRSRLSNRFELWVMNEGKGWTRTFNTAFERIAWPVGSFRDSKIIMKSVD--QFFLFNPKTKRNFI 337 (382)
Q Consensus 262 ~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~W~~~~~i~~~~~~~~~~~~~~g~l~l~~~~--~~~~yd~~t~~~~~ 337 (382)
++...++... ....+.||-+... .....+.....+..+.+..+|.++..... .+.+||+++++...
T Consensus 136 ~g~~iLaSgS-------~DgtIrIWDl~tg---~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~ 203 (568)
T PTZ00420 136 MNYYIMCSSG-------FDSFVNIWDIENE---KRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIAS 203 (568)
T ss_pred CCCeEEEEEe-------CCCeEEEEECCCC---cEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEE
No 166
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=26.35 E-value=5.1e+02 Score=23.71 Aligned_cols=105 Identities=8% Similarity=0.017 Sum_probs=59.2
Q ss_pred CceEEEEeecccccccccEEEEEECCCceeeEeCCCCCCCCCeeeEEEeCCeEEEEEecCCCccCCCCCeEEEEEECCCC
Q 045675 213 KGVLHWIANGIGVLVNEKFVVSYDMNLELFWRTAMPELPTDCYVKALSYDQSLALAVYPGLGFRSRLSNRFELWVMNEGK 292 (382)
Q Consensus 213 ~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~~~l~~~~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~ 292 (382)
+|..-+.++.+ ..+-.+|+.+++-+.+.+-...- ..+..+...+.=|++.+. . ..++..|-+...
T Consensus 83 dgskVf~g~~D------k~~k~wDL~S~Q~~~v~~Hd~pv-kt~~wv~~~~~~cl~TGS--W-----DKTlKfWD~R~~- 147 (347)
T KOG0647|consen 83 DGSKVFSGGCD------KQAKLWDLASGQVSQVAAHDAPV-KTCHWVPGMNYQCLVTGS--W-----DKTLKFWDTRSS- 147 (347)
T ss_pred CCceEEeeccC------CceEEEEccCCCeeeeeecccce-eEEEEecCCCcceeEecc--c-----ccceeecccCCC-
Confidence 45555555544 46778999999888875544321 112222222234888887 4 678999998876
Q ss_pred CeeEEEEeecCCcccceEEeeCCc-EEEEEcC-eEEEEeCCCCcEE
Q 045675 293 GWTRTFNTAFERIAWPVGSFRDSK-IIMKSVD-QFFLFNPKTKRNF 336 (382)
Q Consensus 293 ~W~~~~~i~~~~~~~~~~~~~~g~-l~l~~~~-~~~~yd~~t~~~~ 336 (382)
..+.+|.|++- ..++.-... +++...+ .+.+||++....+
T Consensus 148 --~pv~t~~LPeR--vYa~Dv~~pm~vVata~r~i~vynL~n~~te 189 (347)
T KOG0647|consen 148 --NPVATLQLPER--VYAADVLYPMAVVATAERHIAVYNLENPPTE 189 (347)
T ss_pred --Ceeeeeeccce--eeehhccCceeEEEecCCcEEEEEcCCCcch
Confidence 45667765442 122211112 3333444 7888888655433
No 167
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=26.31 E-value=6.4e+02 Score=24.88 Aligned_cols=69 Identities=7% Similarity=0.103 Sum_probs=44.5
Q ss_pred ceEEECceEEEEeecccccccccEEEEEECCCceeeEe-CCCCCCCCCeeeEE-EeCCeEEEEEecCCCccCCCCCeEEE
Q 045675 208 DAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRT-AMPELPTDCYVKAL-SYDQSLALAVYPGLGFRSRLSNRFEL 285 (382)
Q Consensus 208 ~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P~~~~~~~~~l~-~~~g~L~~~~~~~~~~~~~~~~~~~i 285 (382)
+-..-||.-.-+++.. -.+-..|+.+.+-+.- +++.... ....|+ ..|-+||+.+.. ...+.|
T Consensus 471 ckL~pdgrtLivGGea------stlsiWDLAapTprikaeltssap-aCyALa~spDakvcFsccs--------dGnI~v 535 (705)
T KOG0639|consen 471 CKLLPDGRTLIVGGEA------STLSIWDLAAPTPRIKAELTSSAP-ACYALAISPDAKVCFSCCS--------DGNIAV 535 (705)
T ss_pred eEecCCCceEEecccc------ceeeeeeccCCCcchhhhcCCcch-hhhhhhcCCccceeeeecc--------CCcEEE
Confidence 4444466555555443 3566778887776653 5554321 234444 458899999887 789999
Q ss_pred EEECCC
Q 045675 286 WVMNEG 291 (382)
Q Consensus 286 W~l~~~ 291 (382)
|-|.+.
T Consensus 536 wDLhnq 541 (705)
T KOG0639|consen 536 WDLHNQ 541 (705)
T ss_pred EEcccc
Confidence 999875
No 168
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=25.85 E-value=5e+02 Score=23.46 Aligned_cols=63 Identities=16% Similarity=0.254 Sum_probs=43.5
Q ss_pred CCEEEEEECCCCCeeeecCCC-C---eeEEeCCcceEEECceEEEEeecccccccccEEEEEECCCceeeEeCC
Q 045675 178 DAIAEVYSTSTGKWKEVAAGT-G---SCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRTAM 247 (382)
Q Consensus 178 ~~~~~vyss~t~~W~~~~~~~-~---~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~ 247 (382)
-..+.+|+..+.+|....... . ...+ -...-+++.|.+-.-.. ....+..||..+.+|..+.-
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~-~~~~~Llv~G~ft~~~~------~~~~la~yd~~~~~w~~~~~ 81 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQW-ASNNQLLVGGNFTLNGT------NSSNLATYDFKNQTWSSLGG 81 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEEEEEEEE-ecCCEEEEEEeeEECCC------CceeEEEEecCCCeeeecCC
Confidence 348999999999999887662 2 1122 12366677776664331 13589999999999988754
No 169
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=25.61 E-value=7.3e+02 Score=25.32 Aligned_cols=165 Identities=12% Similarity=0.109 Sum_probs=77.0
Q ss_pred ceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEECCCC--CeeeecCC
Q 045675 120 GMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYSTSTG--KWKEVAAG 197 (382)
Q Consensus 120 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vyss~t~--~W~~~~~~ 197 (382)
.+.+-+||+.++...+ +-.-+.. ...+++.++..+ +.+.+..+ ..+--|+..++ .|......
T Consensus 224 ~G~V~FWd~~~gTLiq---S~~~h~a------dVl~Lav~~~~d-~vfsaGvd------~~ii~~~~~~~~~~wv~~~~r 287 (691)
T KOG2048|consen 224 AGTVTFWDSIFGTLIQ---SHSCHDA------DVLALAVADNED-RVFSAGVD------PKIIQYSLTTNKSEWVINSRR 287 (691)
T ss_pred CceEEEEcccCcchhh---hhhhhhc------ceeEEEEcCCCC-eEEEccCC------CceEEEEecCCccceeeeccc
Confidence 5678889998886542 2111111 234566555433 33333322 13334444332 48876655
Q ss_pred -CCeeEEeCCcceEEECceEEEEeecccccccccEEEEEECCCceeeEe--CCCCCCCCCeeeEEEeCCeEEEEEecCCC
Q 045675 198 -TGSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRT--AMPELPTDCYVKALSYDQSLALAVYPGLG 274 (382)
Q Consensus 198 -~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i--~~P~~~~~~~~~l~~~~g~L~~~~~~~~~ 274 (382)
...... .++.+-+.++.-++. ...+++...++ +... .+|..........+.-..+|.+.-.
T Consensus 288 ~~h~hdv----rs~av~~~~l~sgG~-------d~~l~i~~s~~-~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~---- 351 (691)
T KOG2048|consen 288 DLHAHDV----RSMAVIENALISGGR-------DFTLAICSSRE-FKNMDHRQKNLFPASDRVSVAPENRLLVLWK---- 351 (691)
T ss_pred cCCcccc----eeeeeecceEEecce-------eeEEEEccccc-cCchhhhccccccccceeecCccceEEEEec----
Confidence 222222 333333333333333 36666666555 2221 2222221122333344555655443
Q ss_pred ccCCCCCeEEEEEECCCC-----CeeEEEEeecCC--cccceEEeeCCcEEEEE
Q 045675 275 FRSRLSNRFELWVMNEGK-----GWTRTFNTAFER--IAWPVGSFRDSKIIMKS 321 (382)
Q Consensus 275 ~~~~~~~~~~iW~l~~~~-----~W~~~~~i~~~~--~~~~~~~~~~g~l~l~~ 321 (382)
...+.+|.+.... +-.++..+.+.. ...+.++..+|+++...
T Consensus 352 -----~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~s 400 (691)
T KOG2048|consen 352 -----AHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAIS 400 (691)
T ss_pred -----cccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEe
Confidence 4567888887541 133444443333 35666667777755333
No 170
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=25.46 E-value=6.3e+02 Score=24.51 Aligned_cols=114 Identities=11% Similarity=0.029 Sum_probs=60.8
Q ss_pred eEEECceEEEEeecccccccccEEEEEECCCceeeEeCCCCCCCCCeeeEE-EeCCeEEEEEecCCCccCCCCCeEEEEE
Q 045675 209 AVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRTAMPELPTDCYVKAL-SYDQSLALAVYPGLGFRSRLSNRFELWV 287 (382)
Q Consensus 209 ~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~~~l~-~~~g~L~~~~~~~~~~~~~~~~~~~iW~ 287 (382)
.+..+|..-+-+... ..|..+++.+.+......+.........+. ..+|+ +++... ....+.||.
T Consensus 166 ~fs~~g~~l~~~~~~------~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~-~l~s~s-------~D~tiriwd 231 (456)
T KOG0266|consen 166 DFSPDGRALAAASSD------GLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGS-YLLSGS-------DDKTLRIWD 231 (456)
T ss_pred EEcCCCCeEEEccCC------CcEEEeecccccchhhccccccccceeeeEECCCCc-EEEEec-------CCceEEEee
Confidence 445566663333222 356666664433222222222111222333 33555 666665 488999999
Q ss_pred ECCCCCeeEEEEe-ecCCcccceEEeeCCcEEEEEcC--eEEEEeCCCCcEEEE
Q 045675 288 MNEGKGWTRTFNT-AFERIAWPVGSFRDSKIIMKSVD--QFFLFNPKTKRNFIL 338 (382)
Q Consensus 288 l~~~~~W~~~~~i-~~~~~~~~~~~~~~g~l~l~~~~--~~~~yd~~t~~~~~v 338 (382)
+.+. + ..+.++ .....+.-+++...|++++...+ .+.++|.++++..+.
T Consensus 232 ~~~~-~-~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~ 283 (456)
T KOG0266|consen 232 LKDD-G-RNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRK 283 (456)
T ss_pred ccCC-C-eEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEe
Confidence 9443 2 333444 33333555666677776655543 899999999664443
No 171
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=23.86 E-value=5e+02 Score=24.72 Aligned_cols=58 Identities=12% Similarity=0.275 Sum_probs=41.0
Q ss_pred CCCeEEEEEECCCCCeeEEEEeecCCcccceEEeeCCcEEE-EEcC-eEEEEeCCCCcEEEEe
Q 045675 279 LSNRFELWVMNEGKGWTRTFNTAFERIAWPVGSFRDSKIIM-KSVD-QFFLFNPKTKRNFILP 339 (382)
Q Consensus 279 ~~~~~~iW~l~~~~~W~~~~~i~~~~~~~~~~~~~~g~l~l-~~~~-~~~~yd~~t~~~~~v~ 339 (382)
....+.||..+.. +-+.++..++++..+.+..+|.++. .+.+ ++-++|+++++.....
T Consensus 152 ~Dn~v~iWnv~tg---eali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~ 211 (472)
T KOG0303|consen 152 SDNTVSIWNVGTG---EALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEG 211 (472)
T ss_pred CCceEEEEeccCC---ceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeec
Confidence 3678899998877 3344455555566666666777554 4444 8999999999987766
No 172
>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A. In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane
Probab=23.62 E-value=80 Score=23.79 Aligned_cols=29 Identities=21% Similarity=0.296 Sum_probs=25.7
Q ss_pred CCCCCCHHHHHHHHhcCChhhhhhhhccc
Q 045675 8 TVSSVPLVIITDILLQLPIKSIVRFKCVS 36 (382)
Q Consensus 8 ~~~~LP~dll~~IL~rLp~~sl~r~r~Vc 36 (382)
.+..+|.+++.-||.++.+..|.+.-.-|
T Consensus 3 dvG~~py~ll~piL~~~~~~QL~~iE~~n 31 (109)
T PF06881_consen 3 DVGDVPYHLLRPILEKCSPEQLRRIEDNN 31 (109)
T ss_pred ccCCCCHHHHHHHHccCCHHHHHHHHHhC
Confidence 46789999999999999999999887766
No 173
>PLN02772 guanylate kinase
Probab=23.46 E-value=3.4e+02 Score=25.94 Aligned_cols=45 Identities=22% Similarity=0.246 Sum_probs=31.0
Q ss_pred CCEEEEEECCCCCeeeecCC-CCeeEEeCCcceEEE-CceEEEEeecc
Q 045675 178 DAIAEVYSTSTGKWKEVAAG-TGSCVIYGGQDAVAV-KGVLHWIANGI 223 (382)
Q Consensus 178 ~~~~~vyss~t~~W~~~~~~-~~~~~~~~~~~~v~~-~G~lywl~~~~ 223 (382)
...+++|+..++.|...... ..+... .++.++.+ ++.++.+....
T Consensus 50 ~~~v~i~D~~t~~W~~P~V~G~~P~~r-~GhSa~v~~~~rilv~~~~~ 96 (398)
T PLN02772 50 SIGVQILDKITNNWVSPIVLGTGPKPC-KGYSAVVLNKDRILVIKKGS 96 (398)
T ss_pred cceEEEEECCCCcEecccccCCCCCCC-CcceEEEECCceEEEEeCCC
Confidence 45899999999999886654 333333 33677766 57888877554
No 174
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=23.31 E-value=4.5e+02 Score=22.05 Aligned_cols=93 Identities=13% Similarity=0.116 Sum_probs=47.2
Q ss_pred cEEEEEECCCceeeE-eCCCCCCCCCeeeEEEeC-CeEEEEEecCCCccCCCCCeEEEEEECCCCCeeEEEEeecCC-cc
Q 045675 230 KFVVSYDMNLELFWR-TAMPELPTDCYVKALSYD-QSLALAVYPGLGFRSRLSNRFELWVMNEGKGWTRTFNTAFER-IA 306 (382)
Q Consensus 230 ~~i~~fD~~~~~~~~-i~~P~~~~~~~~~l~~~~-g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~W~~~~~i~~~~-~~ 306 (382)
..|..+|+.+.+... +. ... .....+.... +.+.+.... ...+.+|.+... .....+.... ..
T Consensus 115 ~~i~~~~~~~~~~~~~~~-~~~--~~i~~~~~~~~~~~l~~~~~--------~~~i~i~d~~~~---~~~~~~~~~~~~i 180 (289)
T cd00200 115 KTIKVWDVETGKCLTTLR-GHT--DWVNSVAFSPDGTFVASSSQ--------DGTIKLWDLRTG---KCVATLTGHTGEV 180 (289)
T ss_pred CeEEEEECCCcEEEEEec-cCC--CcEEEEEEcCcCCEEEEEcC--------CCcEEEEEcccc---ccceeEecCcccc
Confidence 478889998544332 23 111 1122333332 455444442 567888888654 1222222111 23
Q ss_pred cceEEeeCCc-EEEEEcC-eEEEEeCCCCcEE
Q 045675 307 WPVGSFRDSK-IIMKSVD-QFFLFNPKTKRNF 336 (382)
Q Consensus 307 ~~~~~~~~g~-l~l~~~~-~~~~yd~~t~~~~ 336 (382)
..+.+..++. +++...+ .+..||+++++..
T Consensus 181 ~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~ 212 (289)
T cd00200 181 NSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCL 212 (289)
T ss_pred ceEEECCCcCEEEEecCCCcEEEEECCCCcee
Confidence 3445555664 5555444 8889998875443
No 175
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=23.24 E-value=6.3e+02 Score=23.75 Aligned_cols=183 Identities=20% Similarity=0.221 Sum_probs=91.2
Q ss_pred ceeEEEEcccccce-eccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEECCCCCeeeecCC-
Q 045675 120 GMAFVLWNPATNEF-KGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYSTSTGKWKEVAAG- 197 (382)
Q Consensus 120 ~~~~~V~NP~T~~~-~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vyss~t~~W~~~~~~- 197 (382)
...+.|.|..|++. ..+|.....+ .++.+.+. ++|-.|. . .+..+.+++..+++ .+...
T Consensus 15 ~~~v~viD~~t~~~~~~i~~~~~~h----------~~~~~s~D-gr~~yv~--~----rdg~vsviD~~~~~--~v~~i~ 75 (369)
T PF02239_consen 15 SGSVAVIDGATNKVVARIPTGGAPH----------AGLKFSPD-GRYLYVA--N----RDGTVSVIDLATGK--VVATIK 75 (369)
T ss_dssp GTEEEEEETTT-SEEEEEE-STTEE----------EEEE-TT--SSEEEEE--E----TTSEEEEEETTSSS--EEEEEE
T ss_pred CCEEEEEECCCCeEEEEEcCCCCce----------eEEEecCC-CCEEEEE--c----CCCeEEEEECCccc--EEEEEe
Confidence 45889999998874 3455443211 12333443 3454443 2 12478899998876 22222
Q ss_pred CCeeEEeCCcceEEECceEEEEeecccccccccEEEEEECCCc-eeeEeCCCCCC---CC-CeeeEEEeC-CeEEEEEec
Q 045675 198 TGSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLE-LFWRTAMPELP---TD-CYVKALSYD-QSLALAVYP 271 (382)
Q Consensus 198 ~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~-~~~~i~~P~~~---~~-~~~~l~~~~-g~L~~~~~~ 271 (382)
...... .-++.-+|+.-+.+... ...+..+|..|. ..+.++..... .. ....+.... +..+++...
T Consensus 76 ~G~~~~---~i~~s~DG~~~~v~n~~-----~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lk 147 (369)
T PF02239_consen 76 VGGNPR---GIAVSPDGKYVYVANYE-----PGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLK 147 (369)
T ss_dssp -SSEEE---EEEE--TTTEEEEEEEE-----TTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEET
T ss_pred cCCCcc---eEEEcCCCCEEEEEecC-----CCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEc
Confidence 122222 24455688866666554 358999999874 44555443211 11 223344433 344555554
Q ss_pred CCCccCCCCCeEEEEEECCCCC-eeEEEEeecCCcccceEEeeCCcEEEEE-c--CeEEEEeCCCCcEEEE
Q 045675 272 GLGFRSRLSNRFELWVMNEGKG-WTRTFNTAFERIAWPVGSFRDSKIIMKS-V--DQFFLFNPKTKRNFIL 338 (382)
Q Consensus 272 ~~~~~~~~~~~~~iW~l~~~~~-W~~~~~i~~~~~~~~~~~~~~g~l~l~~-~--~~~~~yd~~t~~~~~v 338 (382)
. .. +||.++-.+. =.+...+.......-.++..+|.-+++. . +++.+.|.++++...+
T Consensus 148 --d-----~~--~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~ 209 (369)
T PF02239_consen 148 --D-----TG--EIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVAL 209 (369)
T ss_dssp --T-----TT--EEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred --c-----CC--eEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEE
Confidence 1 22 7788863222 1122344444444445666677754443 2 3899999999877654
No 176
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=22.64 E-value=5.5e+02 Score=22.85 Aligned_cols=50 Identities=16% Similarity=0.301 Sum_probs=32.2
Q ss_pred CCeEEEEEECCCCCeeEEEEeecCCcccceEEeeCCcEEEEEcC-eEEEEeCCC
Q 045675 280 SNRFELWVMNEGKGWTRTFNTAFERIAWPVGSFRDSKIIMKSVD-QFFLFNPKT 332 (382)
Q Consensus 280 ~~~~~iW~l~~~~~W~~~~~i~~~~~~~~~~~~~~g~l~l~~~~-~~~~yd~~t 332 (382)
...+++|-.... ..+.++.+..-...+-+..+|+++..... .+..+|.++
T Consensus 164 d~tVRLWD~rTg---t~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaks 214 (334)
T KOG0278|consen 164 DKTVRLWDHRTG---TEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKS 214 (334)
T ss_pred CCceEEEEeccC---cEEEEEecCCCCcceeeccCCCEEEEecCceeEEecccc
Confidence 778999988776 55667766555566666667775544443 555555544
No 177
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.35 E-value=4.4e+02 Score=28.08 Aligned_cols=77 Identities=8% Similarity=0.159 Sum_probs=45.7
Q ss_pred CCCeEEEEEECCC----------CC-eeEEEE--eecC------Cc-------ccceEEeeCCcEEEEEcCeEEEEeCCC
Q 045675 279 LSNRFELWVMNEG----------KG-WTRTFN--TAFE------RI-------AWPVGSFRDSKIIMKSVDQFFLFNPKT 332 (382)
Q Consensus 279 ~~~~~~iW~l~~~----------~~-W~~~~~--i~~~------~~-------~~~~~~~~~g~l~l~~~~~~~~yd~~t 332 (382)
+...++||-|+.. +. |..... +.+- .+ .+|..+..++.|+++.+..+..||+.|
T Consensus 270 EDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsGm~VFkleRErpa~~v~~n~LfYvkd~~i~~~d~~t 349 (1202)
T KOG0292|consen 270 EDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSGMIVFKLERERPAYAVNGNGLFYVKDRFIRSYDLRT 349 (1202)
T ss_pred CCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecCCceEEEEEcccCceEEEcCCEEEEEccceEEeeeccc
Confidence 3678899988632 12 887654 3321 11 567777655557777766999999999
Q ss_pred CcEEEE-eeeCCC--CCeEEEEEEee
Q 045675 333 KRNFIL-PIDSGM--GYSYKVFTYVD 355 (382)
Q Consensus 333 ~~~~~v-~~~~~~--~~~~~~~~y~~ 355 (382)
.+-..+ .+.+.. -.-++.+.|.|
T Consensus 350 ~~d~~v~~lr~~g~~~~~~~smsYNp 375 (1202)
T KOG0292|consen 350 QKDTAVASLRRPGTLWQPPRSLSYNP 375 (1202)
T ss_pred cccceeEeccCCCcccCCcceeeecc
Confidence 764444 233221 11245556655
No 178
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=21.97 E-value=6.4e+02 Score=23.33 Aligned_cols=97 Identities=11% Similarity=0.087 Sum_probs=56.4
Q ss_pred ECceEEEEeecccccccccEEEEEECCCceeeEeCCCCCCCCCeeeEEEeCCeEEEEEecCCCccCCCCCeEEEEEECCC
Q 045675 212 VKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRTAMPELPTDCYVKALSYDQSLALAVYPGLGFRSRLSNRFELWVMNEG 291 (382)
Q Consensus 212 ~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~~~l~~~~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~ 291 (382)
.+|..|-+.... ...|+-+|+.....+.|..-... .....+.-+|+...+... +..+.||+.--.
T Consensus 196 A~~~k~imsas~-----dt~i~lw~lkGq~L~~idtnq~~--n~~aavSP~GRFia~~gF--------TpDVkVwE~~f~ 260 (420)
T KOG2096|consen 196 AGNAKYIMSASL-----DTKICLWDLKGQLLQSIDTNQSS--NYDAAVSPDGRFIAVSGF--------TPDVKVWEPIFT 260 (420)
T ss_pred cCCceEEEEecC-----CCcEEEEecCCceeeeecccccc--ccceeeCCCCcEEEEecC--------CCCceEEEEEec
Confidence 455566655544 35799999998777777543332 233445568888777776 788899986311
Q ss_pred -CC-eeEEE-EeecCCc---ccceEEeeCCc-EEEEEcC
Q 045675 292 -KG-WTRTF-NTAFERI---AWPVGSFRDSK-IIMKSVD 323 (382)
Q Consensus 292 -~~-W~~~~-~i~~~~~---~~~~~~~~~g~-l~l~~~~ 323 (382)
+| ...+. .+.+... +..+++.++.+ ++-+..+
T Consensus 261 kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkD 299 (420)
T KOG2096|consen 261 KDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKD 299 (420)
T ss_pred cCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecC
Confidence 13 33333 3355544 44455554444 4444444
No 179
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=21.31 E-value=7.5e+02 Score=23.89 Aligned_cols=53 Identities=6% Similarity=0.071 Sum_probs=35.1
Q ss_pred CCCeEEEEEECCCCCeeEEEEeecC-CcccceEEeeCCc-EEEEEcC-eEEEEeCCCCc
Q 045675 279 LSNRFELWVMNEGKGWTRTFNTAFE-RIAWPVGSFRDSK-IIMKSVD-QFFLFNPKTKR 334 (382)
Q Consensus 279 ~~~~~~iW~l~~~~~W~~~~~i~~~-~~~~~~~~~~~g~-l~l~~~~-~~~~yd~~t~~ 334 (382)
....+.||.+++.. .+.+.|.. .-+..+.+.+||- +....++ .|.++|++.-+
T Consensus 367 ~d~~vkiwdlks~~---~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~ 422 (506)
T KOG0289|consen 367 PDGVVKIWDLKSQT---NVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLK 422 (506)
T ss_pred CCceEEEEEcCCcc---ccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhc
Confidence 37899999999872 34444432 1255677777876 4555555 68899987554
No 180
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=21.14 E-value=2.5e+02 Score=28.03 Aligned_cols=29 Identities=21% Similarity=0.447 Sum_probs=23.4
Q ss_pred eeccCceEEEeeCCCCceeEEEEcccccceec
Q 045675 104 VGSCNGLLCLDVSSAFGMAFVLWNPATNEFKG 135 (382)
Q Consensus 104 ~~s~~Gll~~~~~~~~~~~~~V~NP~T~~~~~ 135 (382)
+..|||||++-.. ...+-.|+|-+++...
T Consensus 183 in~~hgLla~Gt~---~g~VEfwDpR~ksrv~ 211 (703)
T KOG2321|consen 183 INEEHGLLACGTE---DGVVEFWDPRDKSRVG 211 (703)
T ss_pred ecCccceEEeccc---CceEEEecchhhhhhe
Confidence 5678999998776 4589999999887554
No 181
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=20.89 E-value=4.8e+02 Score=23.79 Aligned_cols=53 Identities=13% Similarity=0.246 Sum_probs=31.5
Q ss_pred CCeEEEEEEC-CCCC-eeEEEEeecCCcccceEEeeCCcEEEEEcC--eEEEEeCCCCcE
Q 045675 280 SNRFELWVMN-EGKG-WTRTFNTAFERIAWPVGSFRDSKIIMKSVD--QFFLFNPKTKRN 335 (382)
Q Consensus 280 ~~~~~iW~l~-~~~~-W~~~~~i~~~~~~~~~~~~~~g~l~l~~~~--~~~~yd~~t~~~ 335 (382)
...+-+|... +.+. |...- - +..+.-+....++..++.+.. .+..+|.+|++-
T Consensus 68 Dr~I~LWnv~gdceN~~~lkg--H-sgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~ 124 (338)
T KOG0265|consen 68 DRAIVLWNVYGDCENFWVLKG--H-SGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKR 124 (338)
T ss_pred cceEEEEeccccccceeeecc--c-cceeEeeeeccCCCEEEEecCCceEEEEeccccee
Confidence 6789999954 4433 88761 0 111111222346666665543 899999999873
No 182
>PF13859 BNR_3: BNR repeat-like domain; PDB: 3B69_A.
Probab=20.33 E-value=6.8e+02 Score=22.99 Aligned_cols=80 Identities=15% Similarity=0.222 Sum_probs=42.5
Q ss_pred ceEEE-CceEEEEeeccccccc-ccEEEEEECC-CceeeEe-CC-CCCCCCCeeeEEEe-CCeEEEEEecCCCccCCCCC
Q 045675 208 DAVAV-KGVLHWIANGIGVLVN-EKFVVSYDMN-LELFWRT-AM-PELPTDCYVKALSY-DQSLALAVYPGLGFRSRLSN 281 (382)
Q Consensus 208 ~~v~~-~G~lywl~~~~~~~~~-~~~i~~fD~~-~~~~~~i-~~-P~~~~~~~~~l~~~-~g~L~~~~~~~~~~~~~~~~ 281 (382)
.+|.. ||.|.+-......... ...++.|-.. ...|..- -+ |..+ ..+.+++. +|+|.|+... . ..
T Consensus 125 SGV~m~dGTLVFPv~a~~~~~~~~~SlIiYS~d~g~~W~lskg~s~~gC--~~psv~EWe~gkLlM~~~c--~-----~g 195 (310)
T PF13859_consen 125 SGVVMEDGTLVFPVQATKKNGDGTVSLIIYSTDDGKTWKLSKGMSPAGC--SDPSVVEWEDGKLLMMTAC--D-----DG 195 (310)
T ss_dssp E-EE-TTS-EEEEEEEEETT---EEEEEEEESSTTSS-EE-S----TT---EEEEEEEE-TTEEEEEEE---T-----TS
T ss_pred CceEEcCCCEEEEEeeeccCccceEEEEEEECCCccceEeccccCCCCc--ceEEEEeccCCeeEEEEec--c-----cc
Confidence 55555 8887776543222222 2567777666 6778764 22 3333 67889999 8999999988 3 44
Q ss_pred eEEEEEECCCCC--eeEE
Q 045675 282 RFELWVMNEGKG--WTRT 297 (382)
Q Consensus 282 ~~~iW~l~~~~~--W~~~ 297 (382)
.-+|++=.|- | |.+-
T Consensus 196 ~rrVYeS~Dm-G~tWtea 212 (310)
T PF13859_consen 196 RRRVYESGDM-GTTWTEA 212 (310)
T ss_dssp ---EEEESST-TSS-EE-
T ss_pred eEEEEEEccc-ceehhhc
Confidence 5677776654 4 8863
No 183
>KOG1852 consensus Cell cycle-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=20.17 E-value=61 Score=25.99 Aligned_cols=30 Identities=17% Similarity=0.283 Sum_probs=24.5
Q ss_pred hcCChh--hhhhhhccchhhHhhcCCHHHHHH
Q 045675 22 LQLPIK--SIVRFKCVSKSWLLLIKSSEFVTA 51 (382)
Q Consensus 22 ~rLp~~--sl~r~r~VcK~W~~li~sp~F~~~ 51 (382)
+|+..| |+.++..|||+-.++.+..+|..+
T Consensus 144 srvsikessv~klgsvcrrvyrifsha~fhhr 175 (223)
T KOG1852|consen 144 SRVSIKESSVAKLGSVCRRVYRIFSHAYFHHR 175 (223)
T ss_pred cccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566654 688899999999999998888654
Done!