BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045677
(352 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2NLI|A Chain A, Crystal Structure Of The Complex Between L-Lactate Oxidase
And A Substrate Analogue At 1.59 Angstrom Resolution
pdb|2NLI|B Chain B, Crystal Structure Of The Complex Between L-Lactate Oxidase
And A Substrate Analogue At 1.59 Angstrom Resolution
Length = 368
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 8/68 (11%)
Query: 260 FLDVACFYKWENRDYVSKILDSCGFDPIIGISVLIEKSLLTVRENDRLWMHDLLQEMGQQ 319
++DV Y E SK++ GF+ I G S T R NDR W H LL Q
Sbjct: 10 YIDVVNTYDLEEE--ASKVVPHGGFNYIAGAS----GDEWTKRANDRAWKHKLLYPRLAQ 63
Query: 320 IVRRQSPD 327
V ++PD
Sbjct: 64 DV--EAPD 69
>pdb|2DU2|A Chain A, Crystal Structure Analysis Of The L-Lactate Oxidase
pdb|2DU2|B Chain B, Crystal Structure Analysis Of The L-Lactate Oxidase
pdb|2DU2|C Chain C, Crystal Structure Analysis Of The L-Lactate Oxidase
pdb|2DU2|D Chain D, Crystal Structure Analysis Of The L-Lactate Oxidase
pdb|2E77|A Chain A, Crystal Structure Of L-Lactate Oxidase With Pyruvate
Complex
pdb|2E77|B Chain B, Crystal Structure Of L-Lactate Oxidase With Pyruvate
Complex
pdb|2E77|C Chain C, Crystal Structure Of L-Lactate Oxidase With Pyruvate
Complex
pdb|2E77|D Chain D, Crystal Structure Of L-Lactate Oxidase With Pyruvate
Complex
pdb|2ZFA|A Chain A, Structure Of Lactate Oxidase At Ph4.5 From Aerococcus
Viridans
pdb|2ZFA|B Chain B, Structure Of Lactate Oxidase At Ph4.5 From Aerococcus
Viridans
Length = 374
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 8/68 (11%)
Query: 260 FLDVACFYKWENRDYVSKILDSCGFDPIIGISVLIEKSLLTVRENDRLWMHDLLQEMGQQ 319
++DV Y E SK++ GF+ I G S T R NDR W H LL Q
Sbjct: 16 YIDVVNTYDLEEE--ASKVVPHGGFNYIAGAS----GDEWTKRANDRAWKHKLLYPRLAQ 69
Query: 320 IVRRQSPD 327
V ++PD
Sbjct: 70 DV--EAPD 75
>pdb|2J6X|A Chain A, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|B Chain B, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|C Chain C, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|D Chain D, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|E Chain E, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|F Chain F, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|G Chain G, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|H Chain H, The Crystal Structure Of Lactate Oxidase
Length = 374
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 8/68 (11%)
Query: 260 FLDVACFYKWENRDYVSKILDSCGFDPIIGISVLIEKSLLTVRENDRLWMHDLLQEMGQQ 319
++DV Y E SK++ GF+ I G S T R NDR W H LL Q
Sbjct: 16 YIDVVNTYDLEEE--ASKVVPHGGFNYIAGAS----GDEWTKRANDRAWKHKLLYPRLAQ 69
Query: 320 IVRRQSPD 327
V ++PD
Sbjct: 70 DV--EAPD 75
>pdb|2QE7|D Chain D, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|E Chain E, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|F Chain F, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
Length = 462
Score = 31.2 bits (69), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 35 IGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGS 78
IG++G G+GKT L + + + ++ E G S A V ER +EG+
Sbjct: 147 IGLFGGAGVGKTVLIQELINNVAQEHGGLSVFAGVGERT-REGN 189
>pdb|1SKY|E Chain E, Crystal Structure Of The Nucleotide Free Alpha3beta3
Sub-Complex Of F1-Atpase From The Thermophilic Bacillus
Ps3
Length = 473
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 35 IGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGS 78
IG++G G+GKT L + + ++ E G S A V ER +EG+
Sbjct: 154 IGLFGGAGVGKTVLIQELIHNIAQEHGGISVFAGVGERT-REGN 196
>pdb|1WDD|A Chain A, Crystal Structure Of Activated Rice Rubisco Complexed With
2- Carboxyarabinitol-1,5-Bisphosphate
pdb|1WDD|E Chain E, Crystal Structure Of Activated Rice Rubisco Complexed With
2- Carboxyarabinitol-1,5-Bisphosphate
pdb|3AXK|A Chain A, Structure Of Rice Rubisco In Complex With Nadp(H)
pdb|3AXK|B Chain B, Structure Of Rice Rubisco In Complex With Nadp(H)
pdb|3AXM|A Chain A, Structure Of Rice Rubisco In Complex With 6pg
pdb|3AXM|B Chain B, Structure Of Rice Rubisco In Complex With 6pg
pdb|3AXM|C Chain C, Structure Of Rice Rubisco In Complex With 6pg
pdb|3AXM|D Chain D, Structure Of Rice Rubisco In Complex With 6pg
pdb|3AXM|E Chain E, Structure Of Rice Rubisco In Complex With 6pg
pdb|3AXM|F Chain F, Structure Of Rice Rubisco In Complex With 6pg
pdb|3AXM|G Chain G, Structure Of Rice Rubisco In Complex With 6pg
pdb|3AXM|H Chain H, Structure Of Rice Rubisco In Complex With 6pg
Length = 477
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 27/49 (55%)
Query: 117 VLLLIDDVADVEQLRGLFGKRDWFGLGSMIIITTRDEHLLKLHRVEEVY 165
V LL DD + ++ RG+F +DW + +I + + H+ + + E++
Sbjct: 346 VDLLRDDFIEKDRARGIFFTQDWVSMPGVIPVASGGIHVWHMPALTEIF 394
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 52/231 (22%), Positives = 96/231 (41%), Gaps = 23/231 (9%)
Query: 35 IGIWGMGGLGKTTLARVV---YDLMSHEFDGSSFLADVRERCDKEGSVIXXXXXXXXXXX 91
+ I+GM G GK+ LA + L+ F G + ++ DK G ++
Sbjct: 150 VTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQ-DKSGLLMKLQNLCMRLDQ 208
Query: 92 XXADN-----SIRNVYDGVNMIGSRLRHKKVLLLIDDVADVEQLRGLFGKRDWFGLGSMI 146
+ + +I D + ++ R +H + LL++DDV D L+ F I
Sbjct: 209 EESFSQRLPLNIEEAKDRLRVLMLR-KHPRSLLILDDVWDPWVLKA-------FDNQCQI 260
Query: 147 IITTRDEHLL-KLHRVEEVYKLEA-LNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYA 204
++TTRD+ + + + V +E+ L ++ + L F K E+ A +K
Sbjct: 261 LLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSL--FVNMKK-EDLPAEAHSIIKEC 317
Query: 205 SGLPLAVDVLVSFLFGRPVDQWRSTQERLKRDPENKILGILQISFDGLKEA 255
G PL V ++ + L P ++W +L+ +I ++ L EA
Sbjct: 318 KGSPLVVSLIGALLRDFP-NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEA 367
>pdb|3K1J|A Chain A, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
pdb|3K1J|B Chain B, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
Length = 604
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 8/62 (12%)
Query: 2 NSELEIPKEL----VGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMS 57
E+E+P++L +G E +E +K T +N R + + G G GK+ L + + +L+
Sbjct: 30 TEEIEVPEKLIDQVIGQEHAVEVIK----TAANQKRHVLLIGEPGTGKSMLGQAMAELLP 85
Query: 58 HE 59
E
Sbjct: 86 TE 87
>pdb|3O1H|B Chain B, Crystal Structure Of The Tors Sensor Domain - Tort Complex
In The Presence Of Tmao
pdb|3O1I|D Chain D, Crystal Structure Of The Tors Sensor Domain - Tort Complex
In The Absence Of Ligand
pdb|3O1I|C Chain C, Crystal Structure Of The Tors Sensor Domain - Tort Complex
In The Absence Of Ligand
pdb|3O1J|C Chain C, Crystal Structure Of The Tors Sensor Domain - Tort Complex
In The Absence Of Isopropanol
pdb|3O1J|D Chain D, Crystal Structure Of The Tors Sensor Domain - Tort Complex
In The Absence Of Isopropanol
Length = 304
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
Query: 251 GLKEAEKNIFLDVACFYKWEN-----RDYVSKILDSCGFDPIIGISVLIEKSLLTVREND 305
G EA KN + + + +N R+ V +++D D I+G +V IE ++ +R D
Sbjct: 157 GFYEAIKNSDIHIVDSFWADNDKELQRNLVQRVIDMGNIDYIVGSAVAIEAAISELRSAD 216
Query: 306 RLWMHDL 312
+ HD+
Sbjct: 217 K--THDI 221
>pdb|2O35|A Chain A, Protein Of Unknown Function (Duf1244) From Sinorhizobium
Meliloti
pdb|2O35|B Chain B, Protein Of Unknown Function (Duf1244) From Sinorhizobium
Meliloti
Length = 105
Score = 28.5 bits (62), Expect = 6.1, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 204 ASGLPLAVDVLVSFLFGRPVDQWRSTQERLKRDPENK 240
ASG+P + + ++G P ++WR TQ + + PE K
Sbjct: 58 ASGVPXSKEESREIVYGXPYEEWR-TQNQGEASPEQK 93
>pdb|1EJ7|L Chain L, Crystal Structure Of Unactivated Tobacco Rubisco With
Bound Phosphate Ions
Length = 475
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 12/49 (24%), Positives = 27/49 (55%)
Query: 117 VLLLIDDVADVEQLRGLFGKRDWFGLGSMIIITTRDEHLLKLHRVEEVY 165
V LL DD + ++ RG++ +DW L ++ + + H+ + + E++
Sbjct: 344 VDLLRDDFVEQDRSRGIYFTQDWVSLPGVLPVASGGIHVWHMPALTEIF 392
>pdb|4RUB|A Chain A, A Crystal Form Of Ribulose-1,5-Bisphosphate
Carboxylase(Slash) Oxygenase From Nicotiana Tabacum In
The Activated State
pdb|4RUB|B Chain B, A Crystal Form Of Ribulose-1,5-Bisphosphate
Carboxylase(Slash) Oxygenase From Nicotiana Tabacum In
The Activated State
pdb|4RUB|C Chain C, A Crystal Form Of Ribulose-1,5-Bisphosphate
Carboxylase(Slash) Oxygenase From Nicotiana Tabacum In
The Activated State
pdb|1RLC|L Chain L, Crystal Structure Of The Unactivated Ribulose 1,
5-Bisphosphate Carboxylase(Slash)oxygenase Complexed
With A Transition State Analog, 2-Carboxy-D-Arabinitol
1,5-Bisphosphate
pdb|4RUB|D Chain D, A Crystal Form Of Ribulose-1,5-Bisphosphate
Carboxylase(Slash) Oxygenase From Nicotiana Tabacum In
The Activated State
Length = 477
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 12/49 (24%), Positives = 27/49 (55%)
Query: 117 VLLLIDDVADVEQLRGLFGKRDWFGLGSMIIITTRDEHLLKLHRVEEVY 165
V LL DD + ++ RG++ +DW L ++ + + H+ + + E++
Sbjct: 346 VDLLRDDFVEQDRSRGIYFTQDWVSLPGVLPVASGGIHVWHMPALTEIF 394
>pdb|3RUB|L Chain L, Crystal Structure Of The Unactivated Form Of
Ribulose-1,5-Bisphosphate Carboxylase(Slash)oxygenase
From Tobacco Refined At 2.0-Angstroms Resolution
Length = 477
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 12/49 (24%), Positives = 27/49 (55%)
Query: 117 VLLLIDDVADVEQLRGLFGKRDWFGLGSMIIITTRDEHLLKLHRVEEVY 165
V LL DD + ++ RG++ +DW L ++ + + H+ + + E++
Sbjct: 346 VDLLRDDFVEQDRSRGIYFTQDWVSLPGVLPVASGGIHVWHMPALTEIF 394
>pdb|1RLD|A Chain A, Solid-State Phase Transition In The Crystal Structure Of
Ribulose 1,5- Biphosphate Carboxylase(Slash)oxygenase
pdb|1RLD|B Chain B, Solid-State Phase Transition In The Crystal Structure Of
Ribulose 1,5- Biphosphate Carboxylase(Slash)oxygenase
Length = 446
Score = 27.7 bits (60), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 12/49 (24%), Positives = 27/49 (55%)
Query: 117 VLLLIDDVADVEQLRGLFGKRDWFGLGSMIIITTRDEHLLKLHRVEEVY 165
V LL DD + ++ RG++ +DW L ++ + + H+ + + E++
Sbjct: 325 VDLLRDDFVEQDRSRGIYFTQDWVSLPGVLPVASGGIHVWHMPALTEIF 373
>pdb|4HHH|A Chain A, Structure Of Pisum Sativum Rubisco
pdb|4HHH|B Chain B, Structure Of Pisum Sativum Rubisco
pdb|4HHH|C Chain C, Structure Of Pisum Sativum Rubisco
pdb|4HHH|D Chain D, Structure Of Pisum Sativum Rubisco
Length = 475
Score = 27.7 bits (60), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 26/49 (53%)
Query: 117 VLLLIDDVADVEQLRGLFGKRDWFGLGSMIIITTRDEHLLKLHRVEEVY 165
V LL DD ++ RG++ +DW L +I + + H+ + + E++
Sbjct: 346 VDLLRDDYIKKDRSRGIYFTQDWVSLPGVIPVASGGIHVWHMPALTEIF 394
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.140 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,009,338
Number of Sequences: 62578
Number of extensions: 403297
Number of successful extensions: 1171
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1160
Number of HSP's gapped (non-prelim): 19
length of query: 352
length of database: 14,973,337
effective HSP length: 100
effective length of query: 252
effective length of database: 8,715,537
effective search space: 2196315324
effective search space used: 2196315324
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)