Query 045677
Match_columns 352
No_of_seqs 146 out of 1687
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 04:23:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045677.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045677hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 3.4E-41 7.3E-46 341.0 35.6 343 3-351 178-531 (1153)
2 KOG4658 Apoptotic ATPase [Sign 100.0 4.3E-39 9.4E-44 311.1 26.2 306 12-324 161-498 (889)
3 PF00931 NB-ARC: NB-ARC domain 100.0 4.1E-37 8.8E-42 268.8 18.6 268 14-286 1-283 (287)
4 PRK04841 transcriptional regul 99.9 4.5E-21 9.7E-26 193.0 27.3 302 3-326 8-337 (903)
5 COG2909 MalT ATP-dependent tra 99.9 1.3E-19 2.8E-24 168.6 23.5 300 4-327 14-344 (894)
6 COG3899 Predicted ATPase [Gene 99.8 6.7E-18 1.5E-22 164.9 20.3 328 10-348 1-405 (849)
7 PRK00411 cdc6 cell division co 99.7 2.3E-15 4.9E-20 137.5 22.9 288 4-302 25-358 (394)
8 PF01637 Arch_ATPase: Archaeal 99.7 1.8E-16 4E-21 134.1 9.5 198 11-214 1-234 (234)
9 TIGR02928 orc1/cdc6 family rep 99.6 2.7E-13 5.9E-18 122.5 27.6 290 3-303 9-351 (365)
10 TIGR00635 ruvB Holliday juncti 99.6 2.3E-14 5E-19 126.2 18.0 256 9-307 4-294 (305)
11 PRK00080 ruvB Holliday junctio 99.6 5.5E-14 1.2E-18 124.6 16.9 263 5-306 21-314 (328)
12 TIGR03015 pepcterm_ATPase puta 99.5 2.9E-12 6.4E-17 110.8 18.9 181 32-218 43-242 (269)
13 PF14516 AAA_35: AAA-like doma 99.4 1.3E-10 2.8E-15 102.8 24.1 287 4-317 6-329 (331)
14 PF05729 NACHT: NACHT domain 99.4 5.3E-12 1.1E-16 100.8 11.6 143 33-183 1-163 (166)
15 PRK12402 replication factor C 99.3 2.7E-10 5.8E-15 101.9 19.4 207 5-217 11-229 (337)
16 COG2256 MGS1 ATPase related to 99.3 3.9E-11 8.5E-16 103.8 12.0 170 9-210 24-208 (436)
17 PRK06893 DNA replication initi 99.3 2.6E-10 5.7E-15 95.6 16.1 154 32-218 39-207 (229)
18 PTZ00112 origin recognition co 99.3 6.6E-10 1.4E-14 105.7 19.3 284 4-302 750-1086(1164)
19 COG1474 CDC6 Cdc6-related prot 99.2 2.5E-09 5.4E-14 95.1 21.7 289 3-303 11-335 (366)
20 PRK13342 recombination factor 99.2 5.6E-10 1.2E-14 102.1 17.3 181 5-218 8-200 (413)
21 TIGR03420 DnaA_homol_Hda DnaA 99.2 5.8E-10 1.3E-14 93.8 15.9 175 9-218 15-205 (226)
22 PRK07003 DNA polymerase III su 99.2 3E-09 6.4E-14 100.6 21.5 194 7-213 14-220 (830)
23 PLN03025 replication factor C 99.2 2.2E-09 4.9E-14 94.8 19.4 189 5-216 9-202 (319)
24 PRK00440 rfc replication facto 99.2 2.2E-09 4.8E-14 95.3 19.5 185 9-217 17-206 (319)
25 PRK14961 DNA polymerase III su 99.2 8.1E-09 1.8E-13 92.8 21.3 197 5-215 12-221 (363)
26 PRK14960 DNA polymerase III su 99.2 2.9E-09 6.3E-14 99.5 18.1 195 7-214 13-219 (702)
27 PRK14956 DNA polymerase III su 99.1 4E-09 8.7E-14 95.7 18.2 196 7-215 16-223 (484)
28 PRK08727 hypothetical protein; 99.1 2.7E-09 5.8E-14 89.7 15.9 170 11-215 21-205 (233)
29 PRK08903 DnaA regulatory inact 99.1 1.5E-09 3.2E-14 91.3 14.4 172 9-218 19-203 (227)
30 PRK14963 DNA polymerase III su 99.1 7.8E-09 1.7E-13 95.9 20.2 201 7-217 12-220 (504)
31 PRK12323 DNA polymerase III su 99.1 8E-09 1.7E-13 96.4 19.6 200 7-214 14-225 (700)
32 PRK04195 replication factor C 99.1 6.1E-09 1.3E-13 97.2 19.1 218 5-250 10-239 (482)
33 PRK14949 DNA polymerase III su 99.1 1.6E-08 3.4E-13 97.6 21.9 194 6-215 13-221 (944)
34 TIGR02397 dnaX_nterm DNA polym 99.1 2.9E-08 6.2E-13 89.5 22.4 195 5-217 10-221 (355)
35 PF13191 AAA_16: AAA ATPase do 99.1 5E-10 1.1E-14 91.1 9.9 50 10-59 1-51 (185)
36 COG2255 RuvB Holliday junction 99.1 4.2E-09 9.1E-14 87.3 15.0 258 7-307 24-316 (332)
37 PTZ00202 tuzin; Provisional 99.1 1E-08 2.3E-13 90.8 17.9 169 3-183 256-434 (550)
38 PRK14087 dnaA chromosomal repl 99.1 4.7E-09 1E-13 96.4 16.5 191 9-218 116-323 (450)
39 PRK08084 DNA replication initi 99.1 7.5E-09 1.6E-13 87.2 16.3 177 7-218 21-213 (235)
40 PRK08691 DNA polymerase III su 99.1 5.4E-09 1.2E-13 98.5 16.6 196 7-215 14-221 (709)
41 PRK07471 DNA polymerase III su 99.1 1.2E-08 2.6E-13 90.9 18.0 200 5-214 15-238 (365)
42 PF00308 Bac_DnaA: Bacterial d 99.1 6.7E-09 1.5E-13 86.3 15.1 194 2-218 2-212 (219)
43 PRK09112 DNA polymerase III su 99.1 4.4E-09 9.4E-14 93.3 14.7 200 5-214 19-240 (351)
44 PRK05642 DNA replication initi 99.1 7.7E-09 1.7E-13 87.0 15.4 181 5-218 16-212 (234)
45 PRK14951 DNA polymerase III su 99.1 5.3E-08 1.2E-12 91.9 22.5 198 7-215 14-226 (618)
46 PRK06645 DNA polymerase III su 99.1 2.9E-08 6.3E-13 91.8 20.4 196 7-214 19-229 (507)
47 COG3903 Predicted ATPase [Gene 99.1 3.3E-10 7.1E-15 98.8 7.2 284 31-326 13-319 (414)
48 PF05496 RuvB_N: Holliday junc 99.0 5.1E-09 1.1E-13 84.9 12.8 181 5-219 20-226 (233)
49 PRK09087 hypothetical protein; 99.0 4.3E-09 9.4E-14 87.8 12.8 145 32-218 44-199 (226)
50 PRK14964 DNA polymerase III su 99.0 1.7E-08 3.6E-13 92.7 17.7 197 6-215 10-218 (491)
51 PRK14962 DNA polymerase III su 99.0 5.6E-08 1.2E-12 89.6 21.1 195 5-216 10-221 (472)
52 PRK14958 DNA polymerase III su 99.0 4.1E-08 8.8E-13 91.4 20.4 196 7-215 14-221 (509)
53 PRK14088 dnaA chromosomal repl 99.0 5E-08 1.1E-12 89.6 20.2 189 7-218 104-309 (440)
54 PF13173 AAA_14: AAA domain 99.0 1.1E-09 2.3E-14 83.3 7.4 119 33-175 3-127 (128)
55 PF10443 RNA12: RNA12 protein; 99.0 3.8E-07 8.2E-12 81.0 24.1 290 14-322 1-394 (431)
56 PRK14955 DNA polymerase III su 99.0 3.2E-08 6.9E-13 90.0 17.8 204 5-216 12-230 (397)
57 PRK14957 DNA polymerase III su 99.0 1.2E-07 2.5E-12 88.5 21.4 189 8-212 15-218 (546)
58 PRK07940 DNA polymerase III su 99.0 4.4E-08 9.5E-13 88.1 17.8 184 9-211 5-210 (394)
59 PRK05564 DNA polymerase III su 99.0 5.6E-08 1.2E-12 85.8 18.2 176 9-212 4-188 (313)
60 PRK07994 DNA polymerase III su 99.0 1.4E-08 3E-13 96.0 14.8 197 6-215 13-221 (647)
61 PRK09111 DNA polymerase III su 99.0 8.2E-08 1.8E-12 90.8 19.8 199 6-215 21-234 (598)
62 KOG0989 Replication factor C, 99.0 5.4E-08 1.2E-12 81.7 16.2 189 5-210 32-226 (346)
63 PRK14970 DNA polymerase III su 99.0 2.4E-07 5.3E-12 83.7 21.7 188 5-217 13-212 (367)
64 TIGR00678 holB DNA polymerase 99.0 8.6E-08 1.9E-12 78.1 17.0 88 114-209 95-186 (188)
65 cd00009 AAA The AAA+ (ATPases 99.0 1E-08 2.2E-13 79.8 11.2 46 12-59 1-46 (151)
66 PRK14950 DNA polymerase III su 98.9 1.1E-07 2.4E-12 90.6 20.0 202 5-218 12-225 (585)
67 PRK14086 dnaA chromosomal repl 98.9 8.9E-08 1.9E-12 89.5 18.7 252 6-280 286-580 (617)
68 PRK07764 DNA polymerase III su 98.9 1.1E-07 2.3E-12 93.0 19.8 188 9-214 15-221 (824)
69 PRK14952 DNA polymerase III su 98.9 2.9E-07 6.2E-12 86.7 22.0 193 7-212 11-217 (584)
70 KOG2028 ATPase related to the 98.9 3.3E-08 7.2E-13 84.8 14.1 173 9-209 138-331 (554)
71 TIGR01242 26Sp45 26S proteasom 98.9 1.5E-08 3.3E-13 91.2 12.9 175 7-208 120-328 (364)
72 PF13401 AAA_22: AAA domain; P 98.9 5.2E-09 1.1E-13 79.9 8.6 114 32-152 4-125 (131)
73 TIGR03345 VI_ClpV1 type VI sec 98.9 1.9E-08 4.1E-13 99.3 14.5 184 7-213 185-395 (852)
74 PRK05896 DNA polymerase III su 98.9 9E-08 2E-12 89.4 18.1 198 5-216 12-222 (605)
75 TIGR00362 DnaA chromosomal rep 98.9 6.7E-08 1.4E-12 88.5 17.0 187 9-218 111-314 (405)
76 PRK14953 DNA polymerase III su 98.9 4.8E-07 1E-11 83.9 22.6 199 7-216 14-222 (486)
77 PRK14969 DNA polymerase III su 98.9 1.6E-07 3.4E-12 88.1 19.5 195 7-214 14-220 (527)
78 PRK13341 recombination factor 98.9 4.2E-08 9.2E-13 94.6 16.0 175 9-216 28-219 (725)
79 PRK00149 dnaA chromosomal repl 98.9 5.9E-08 1.3E-12 89.9 16.3 249 9-280 123-413 (450)
80 PRK14954 DNA polymerase III su 98.9 2.4E-07 5.2E-12 87.9 20.4 202 5-213 12-227 (620)
81 TIGR02639 ClpA ATP-dependent C 98.9 2.8E-08 6.1E-13 97.2 14.5 152 9-183 182-358 (731)
82 PRK07133 DNA polymerase III su 98.9 5.8E-07 1.3E-11 85.9 21.5 197 5-216 14-221 (725)
83 PRK08451 DNA polymerase III su 98.9 5.9E-07 1.3E-11 83.4 20.8 195 5-215 10-219 (535)
84 PRK06620 hypothetical protein; 98.9 6.6E-08 1.4E-12 80.0 13.0 168 4-217 12-192 (214)
85 PRK14959 DNA polymerase III su 98.8 7.3E-07 1.6E-11 83.9 21.0 196 8-217 15-224 (624)
86 PRK03992 proteasome-activating 98.8 1.3E-07 2.9E-12 85.6 15.8 174 8-208 130-337 (389)
87 PRK05563 DNA polymerase III su 98.8 1.4E-06 2.9E-11 82.5 22.6 196 5-214 12-220 (559)
88 PRK06647 DNA polymerase III su 98.8 1.3E-06 2.8E-11 82.4 22.3 197 5-215 12-221 (563)
89 PRK12422 chromosomal replicati 98.8 3.8E-07 8.3E-12 83.7 18.3 183 6-212 109-311 (445)
90 PRK06305 DNA polymerase III su 98.8 9.9E-07 2.1E-11 81.3 21.0 200 5-215 13-223 (451)
91 CHL00095 clpC Clp protease ATP 98.8 7.7E-08 1.7E-12 95.3 14.3 150 9-181 179-352 (821)
92 PRK14971 DNA polymerase III su 98.8 1.5E-06 3.3E-11 82.9 21.8 196 7-215 15-223 (614)
93 PRK14948 DNA polymerase III su 98.8 7.1E-07 1.5E-11 85.1 19.5 198 8-216 15-224 (620)
94 TIGR02881 spore_V_K stage V sp 98.8 1.2E-07 2.7E-12 81.3 12.4 153 10-184 7-192 (261)
95 TIGR03346 chaperone_ClpB ATP-d 98.8 2E-07 4.4E-12 92.7 15.0 152 8-182 172-348 (852)
96 PRK14965 DNA polymerase III su 98.7 1.7E-06 3.6E-11 82.3 20.2 190 5-212 12-218 (576)
97 COG3267 ExeA Type II secretory 98.7 8.1E-07 1.8E-11 73.0 15.1 182 30-217 49-248 (269)
98 PF05673 DUF815: Protein of un 98.7 2E-06 4.3E-11 71.0 17.5 122 5-155 23-153 (249)
99 PHA02544 44 clamp loader, smal 98.7 5.6E-07 1.2E-11 79.7 14.6 150 5-181 17-171 (316)
100 PRK10865 protein disaggregatio 98.7 2.5E-07 5.4E-12 91.8 13.0 49 8-58 177-225 (857)
101 PRK05707 DNA polymerase III su 98.7 1.7E-06 3.7E-11 76.2 16.5 93 115-213 106-202 (328)
102 COG0593 DnaA ATPase involved i 98.7 7.4E-07 1.6E-11 79.5 14.1 184 7-213 86-285 (408)
103 PRK11034 clpA ATP-dependent Cl 98.6 1E-07 2.2E-12 92.5 8.9 151 9-182 186-361 (758)
104 PRK07399 DNA polymerase III su 98.6 4.5E-06 9.9E-11 73.1 17.5 193 9-214 4-221 (314)
105 KOG2543 Origin recognition com 98.6 3.6E-07 7.9E-12 79.0 9.7 167 6-183 3-193 (438)
106 TIGR03689 pup_AAA proteasome A 98.6 1.4E-06 3E-11 80.6 13.8 159 9-183 182-378 (512)
107 KOG2227 Pre-initiation complex 98.5 5.3E-06 1.2E-10 73.8 16.0 206 6-217 147-371 (529)
108 PRK08769 DNA polymerase III su 98.5 7.1E-06 1.5E-10 71.7 16.7 180 18-213 13-207 (319)
109 COG2812 DnaX DNA polymerase II 98.5 3.2E-06 7E-11 77.7 15.0 193 9-212 16-218 (515)
110 CHL00176 ftsH cell division pr 98.5 2.7E-06 5.9E-11 81.3 15.0 181 9-216 183-397 (638)
111 PF00004 AAA: ATPase family as 98.5 9.3E-07 2E-11 67.4 9.6 24 35-58 1-24 (132)
112 PTZ00454 26S protease regulato 98.5 2.5E-06 5.5E-11 77.1 13.4 181 9-216 145-360 (398)
113 TIGR01241 FtsH_fam ATP-depende 98.5 6.6E-06 1.4E-10 77.3 16.5 181 9-216 55-269 (495)
114 TIGR02880 cbbX_cfxQ probable R 98.5 5.7E-06 1.2E-10 71.7 14.8 152 10-183 23-208 (284)
115 COG1222 RPT1 ATP-dependent 26S 98.5 4.6E-06 1E-10 71.8 13.4 171 12-210 154-359 (406)
116 CHL00181 cbbX CbbX; Provisiona 98.4 2.5E-05 5.4E-10 67.7 17.1 130 32-183 59-209 (287)
117 CHL00195 ycf46 Ycf46; Provisio 98.4 3.3E-06 7.1E-11 78.1 12.2 154 31-209 258-430 (489)
118 PRK06871 DNA polymerase III su 98.4 3.8E-05 8.3E-10 67.3 18.2 172 19-210 12-199 (325)
119 PF05621 TniB: Bacterial TniB 98.4 2.6E-05 5.7E-10 66.6 16.5 200 9-214 34-261 (302)
120 COG1373 Predicted ATPase (AAA+ 98.4 1.3E-05 2.9E-10 72.7 15.5 221 34-301 39-269 (398)
121 PRK08058 DNA polymerase III su 98.4 1.5E-05 3.3E-10 70.6 15.5 161 10-182 6-181 (329)
122 PTZ00361 26 proteosome regulat 98.4 6.1E-06 1.3E-10 75.2 13.1 180 9-215 183-397 (438)
123 PRK06964 DNA polymerase III su 98.4 3.2E-05 7E-10 68.3 17.2 90 114-213 131-224 (342)
124 TIGR00602 rad24 checkpoint pro 98.4 5.9E-06 1.3E-10 78.5 13.0 53 5-57 80-135 (637)
125 PRK08116 hypothetical protein; 98.4 3.2E-06 6.8E-11 72.5 10.0 101 33-152 115-220 (268)
126 TIGR02903 spore_lon_C ATP-depe 98.4 2.4E-05 5.2E-10 75.0 16.7 48 7-56 152-199 (615)
127 PRK07993 DNA polymerase III su 98.3 4.5E-05 9.7E-10 67.5 17.1 169 18-210 11-200 (334)
128 PRK06090 DNA polymerase III su 98.3 7.8E-05 1.7E-09 65.2 17.5 172 19-214 13-201 (319)
129 KOG0733 Nuclear AAA ATPase (VC 98.3 1.3E-05 2.9E-10 73.6 12.5 174 9-209 190-397 (802)
130 COG0542 clpA ATP-binding subun 98.3 4.8E-06 1E-10 79.8 10.0 152 8-182 169-345 (786)
131 PRK07952 DNA replication prote 98.3 4.7E-06 1E-10 70.0 8.7 49 18-66 85-133 (244)
132 PRK08181 transposase; Validate 98.3 6.3E-06 1.4E-10 70.3 9.5 34 33-66 107-140 (269)
133 KOG2228 Origin recognition com 98.3 3E-05 6.4E-10 66.4 13.2 174 8-183 23-219 (408)
134 COG0466 Lon ATP-dependent Lon 98.3 1.4E-05 3E-10 75.0 12.1 160 7-183 321-508 (782)
135 smart00382 AAA ATPases associa 98.2 5.9E-06 1.3E-10 63.6 8.4 28 33-60 3-30 (148)
136 KOG0991 Replication factor C, 98.2 4.5E-05 9.7E-10 61.9 13.3 58 5-64 23-81 (333)
137 PF13177 DNA_pol3_delta2: DNA 98.2 1.7E-05 3.7E-10 62.6 10.8 146 13-171 1-162 (162)
138 TIGR01243 CDC48 AAA family ATP 98.2 4.3E-05 9.3E-10 75.4 15.9 179 10-215 454-665 (733)
139 TIGR01243 CDC48 AAA family ATP 98.2 3.1E-05 6.8E-10 76.3 15.0 173 10-209 179-382 (733)
140 KOG0735 AAA+-type ATPase [Post 98.2 3.9E-05 8.5E-10 71.8 14.3 164 31-216 430-618 (952)
141 cd01128 rho_factor Transcripti 98.2 1.8E-06 3.9E-11 72.8 5.3 92 32-126 16-114 (249)
142 PF07693 KAP_NTPase: KAP famil 98.2 0.00015 3.2E-09 64.5 17.9 77 14-90 1-80 (325)
143 COG0470 HolB ATPase involved i 98.2 5.7E-05 1.2E-09 67.2 14.1 161 10-180 2-178 (325)
144 PRK12377 putative replication 98.2 1E-05 2.2E-10 68.3 8.6 36 32-67 101-136 (248)
145 PRK13531 regulatory ATPase Rav 98.2 1.8E-05 4E-10 72.1 10.6 48 7-58 18-65 (498)
146 TIGR03345 VI_ClpV1 type VI sec 98.2 7.8E-05 1.7E-09 74.2 15.8 52 7-58 564-622 (852)
147 TIGR02640 gas_vesic_GvpN gas v 98.1 9E-05 1.9E-09 63.6 14.3 37 18-58 11-47 (262)
148 PF01695 IstB_IS21: IstB-like 98.1 3.2E-06 6.9E-11 67.8 4.8 36 32-67 47-82 (178)
149 PRK06835 DNA replication prote 98.1 6.4E-06 1.4E-10 72.5 6.9 35 33-67 184-218 (329)
150 TIGR00763 lon ATP-dependent pr 98.1 3E-05 6.6E-10 76.7 12.3 53 8-60 319-375 (775)
151 TIGR02639 ClpA ATP-dependent C 98.1 8.5E-05 1.8E-09 73.1 14.9 50 8-57 453-509 (731)
152 PRK09376 rho transcription ter 98.1 7.9E-06 1.7E-10 72.3 6.8 91 32-125 169-266 (416)
153 KOG0744 AAA+-type ATPase [Post 98.1 3E-06 6.6E-11 71.8 4.0 80 32-127 177-262 (423)
154 PRK10536 hypothetical protein; 98.1 0.0001 2.2E-09 61.7 12.9 43 9-55 55-97 (262)
155 PRK04132 replication factor C 98.1 0.00069 1.5E-08 66.6 20.2 160 37-218 569-735 (846)
156 PRK08699 DNA polymerase III su 98.1 0.00016 3.5E-09 63.7 14.5 86 115-210 113-202 (325)
157 PRK06526 transposase; Provisio 98.1 7.2E-06 1.6E-10 69.6 5.8 29 32-60 98-126 (254)
158 TIGR02902 spore_lonB ATP-depen 98.1 5E-05 1.1E-09 71.7 11.9 47 9-57 65-111 (531)
159 PLN00020 ribulose bisphosphate 98.1 0.00028 6.1E-09 62.0 15.4 30 30-59 146-175 (413)
160 TIGR03346 chaperone_ClpB ATP-d 98.1 0.00024 5.1E-09 71.2 17.1 53 7-59 563-622 (852)
161 PRK10865 protein disaggregatio 98.0 0.00016 3.4E-09 72.3 15.6 52 8-59 567-625 (857)
162 TIGR00767 rho transcription te 98.0 9.6E-06 2.1E-10 72.1 6.3 93 31-126 167-266 (415)
163 KOG0741 AAA+-type ATPase [Post 98.0 0.00016 3.5E-09 65.6 14.0 131 30-183 536-686 (744)
164 TIGR02974 phageshock_pspF psp 98.0 0.00012 2.7E-09 64.8 13.4 47 11-57 1-47 (329)
165 PRK09183 transposase/IS protei 98.0 1.8E-05 3.8E-10 67.7 7.5 27 33-59 103-129 (259)
166 COG1484 DnaC DNA replication p 98.0 1.5E-05 3.2E-10 67.8 7.0 29 31-59 104-132 (254)
167 PRK06921 hypothetical protein; 98.0 8.1E-06 1.8E-10 69.9 5.4 37 31-67 116-153 (266)
168 TIGR01817 nifA Nif-specific re 98.0 0.00012 2.6E-09 69.7 13.7 52 7-58 194-245 (534)
169 KOG2004 Mitochondrial ATP-depe 98.0 5.8E-05 1.3E-09 70.8 11.0 53 8-60 410-466 (906)
170 PRK08939 primosomal protein Dn 98.0 3E-05 6.5E-10 67.7 8.6 54 13-66 135-190 (306)
171 PF10236 DAP3: Mitochondrial r 98.0 0.00026 5.5E-09 62.2 14.5 48 164-211 258-306 (309)
172 COG2607 Predicted ATPase (AAA+ 98.0 0.00016 3.5E-09 59.1 11.9 54 9-62 60-115 (287)
173 PRK11331 5-methylcytosine-spec 98.0 3.2E-05 7E-10 70.0 8.6 46 9-58 175-220 (459)
174 COG1223 Predicted ATPase (AAA+ 98.0 5.4E-05 1.2E-09 62.5 9.1 172 9-207 121-318 (368)
175 KOG0730 AAA+-type ATPase [Post 98.0 7.3E-05 1.6E-09 69.5 10.8 153 30-209 466-638 (693)
176 PRK12608 transcription termina 98.0 9.3E-05 2E-09 65.5 11.0 103 19-125 121-230 (380)
177 PRK10787 DNA-binding ATP-depen 98.0 5.4E-05 1.2E-09 74.4 10.6 53 8-60 321-377 (784)
178 smart00763 AAA_PrkA PrkA AAA d 98.0 1.4E-05 3E-10 70.3 5.8 55 4-58 46-104 (361)
179 PF14532 Sigma54_activ_2: Sigm 98.0 7.3E-06 1.6E-10 63.0 3.7 47 12-58 1-47 (138)
180 PRK11034 clpA ATP-dependent Cl 97.9 0.00014 3E-09 71.1 12.9 50 8-57 457-513 (758)
181 KOG0739 AAA+-type ATPase [Post 97.9 0.00028 6.1E-09 59.5 12.7 173 10-209 134-336 (439)
182 COG0542 clpA ATP-binding subun 97.9 8.1E-05 1.8E-09 71.6 10.9 130 8-151 490-642 (786)
183 PRK09361 radB DNA repair and r 97.9 4.8E-05 1E-09 63.8 8.5 48 20-67 11-58 (225)
184 PRK11608 pspF phage shock prot 97.9 0.0005 1.1E-08 61.0 14.9 49 8-56 5-53 (326)
185 PF03215 Rad17: Rad17 cell cyc 97.9 0.0001 2.2E-09 68.9 10.8 49 9-57 19-70 (519)
186 KOG0731 AAA+-type ATPase conta 97.9 0.00044 9.5E-09 66.3 14.6 177 10-212 312-522 (774)
187 KOG0733 Nuclear AAA ATPase (VC 97.9 0.00024 5.3E-09 65.6 12.1 130 32-185 545-694 (802)
188 TIGR01650 PD_CobS cobaltochela 97.9 0.0022 4.8E-08 56.0 17.6 52 5-60 41-92 (327)
189 cd01394 radB RadB. The archaea 97.9 7.2E-05 1.6E-09 62.4 8.3 49 19-67 6-54 (218)
190 KOG0734 AAA+-type ATPase conta 97.8 0.00023 4.9E-09 64.8 11.3 43 15-57 313-362 (752)
191 PF02562 PhoH: PhoH-like prote 97.8 6.8E-05 1.5E-09 61.0 7.4 129 14-151 5-154 (205)
192 PRK05022 anaerobic nitric oxid 97.8 0.00094 2E-08 63.1 16.1 53 7-59 185-237 (509)
193 KOG1514 Origin recognition com 97.8 0.00088 1.9E-08 63.0 15.2 201 7-212 394-619 (767)
194 PF00158 Sigma54_activat: Sigm 97.8 5.2E-05 1.1E-09 60.1 6.4 47 11-57 1-47 (168)
195 cd01120 RecA-like_NTPases RecA 97.8 0.00011 2.3E-09 58.1 8.2 33 35-67 2-34 (165)
196 PHA00729 NTP-binding motif con 97.8 0.00023 4.9E-09 58.7 10.1 27 31-57 16-42 (226)
197 PRK04296 thymidine kinase; Pro 97.8 4.3E-05 9.4E-10 62.1 5.9 111 33-153 3-116 (190)
198 TIGR02237 recomb_radB DNA repa 97.8 4E-05 8.6E-10 63.5 5.8 38 30-67 10-47 (209)
199 CHL00095 clpC Clp protease ATP 97.8 0.00017 3.7E-09 71.9 11.2 51 7-57 507-564 (821)
200 PF04665 Pox_A32: Poxvirus A32 97.8 2.9E-05 6.3E-10 64.6 4.8 34 34-67 15-48 (241)
201 KOG0735 AAA+-type ATPase [Post 97.8 0.00046 9.9E-09 65.0 12.3 151 33-210 702-872 (952)
202 cd00561 CobA_CobO_BtuR ATP:cor 97.8 9.8E-05 2.1E-09 57.5 6.8 118 33-153 3-138 (159)
203 COG4088 Predicted nucleotide k 97.8 0.00022 4.8E-09 56.9 8.7 28 33-60 2-29 (261)
204 PRK15429 formate hydrogenlyase 97.7 0.0018 3.9E-08 63.6 17.0 50 9-58 376-425 (686)
205 PRK06067 flagellar accessory p 97.7 0.00023 4.9E-09 60.1 9.3 49 19-67 12-60 (234)
206 KOG1970 Checkpoint RAD17-RFC c 97.7 0.0011 2.3E-08 60.8 13.8 42 16-57 89-135 (634)
207 cd01393 recA_like RecA is a b 97.7 0.00045 9.8E-09 58.0 10.9 40 21-60 8-47 (226)
208 cd01129 PulE-GspE PulE/GspE Th 97.7 0.0003 6.5E-09 60.3 9.7 102 18-136 69-170 (264)
209 PF13604 AAA_30: AAA domain; P 97.7 9.7E-05 2.1E-09 60.4 6.4 115 18-151 7-129 (196)
210 PF00448 SRP54: SRP54-type pro 97.7 0.00036 7.8E-09 56.9 9.2 35 32-66 1-35 (196)
211 PF13207 AAA_17: AAA domain; P 97.7 4.3E-05 9.3E-10 57.2 3.6 23 34-56 1-23 (121)
212 cd00983 recA RecA is a bacter 97.6 0.00023 4.9E-09 62.3 8.2 48 20-67 42-90 (325)
213 PRK06696 uridine kinase; Valid 97.6 0.00012 2.7E-09 61.2 6.4 47 13-59 2-49 (223)
214 KOG0743 AAA+-type ATPase [Post 97.6 0.0051 1.1E-07 55.3 16.6 28 32-59 235-262 (457)
215 PTZ00494 tuzin-like protein; P 97.6 0.0033 7.3E-08 56.5 15.3 168 4-183 366-544 (664)
216 CHL00206 ycf2 Ycf2; Provisiona 97.6 0.0004 8.6E-09 72.5 10.9 30 30-59 1628-1657(2281)
217 cd01131 PilT Pilus retraction 97.6 0.00021 4.6E-09 58.5 7.5 106 33-151 2-107 (198)
218 PRK10820 DNA-binding transcrip 97.6 0.0017 3.6E-08 61.5 14.4 48 9-56 204-251 (520)
219 cd02027 APSK Adenosine 5'-phos 97.6 0.00046 1E-08 53.7 8.9 25 34-58 1-25 (149)
220 cd01133 F1-ATPase_beta F1 ATP 97.6 0.00033 7.2E-09 59.6 8.5 42 31-72 68-109 (274)
221 COG0464 SpoVK ATPases of the A 97.6 0.00066 1.4E-08 64.1 11.5 152 30-206 274-445 (494)
222 cd00544 CobU Adenosylcobinamid 97.6 0.00021 4.5E-09 56.7 6.8 22 34-55 1-22 (169)
223 TIGR02012 tigrfam_recA protein 97.6 0.00028 6E-09 61.7 8.1 48 20-67 42-90 (321)
224 PF01583 APS_kinase: Adenylyls 97.6 5.1E-05 1.1E-09 58.8 3.1 35 32-66 2-36 (156)
225 PRK10733 hflB ATP-dependent me 97.6 0.00059 1.3E-08 66.1 11.0 154 33-213 186-363 (644)
226 cd01123 Rad51_DMC1_radA Rad51_ 97.6 0.00046 1E-08 58.3 8.8 36 21-56 8-43 (235)
227 PRK15455 PrkA family serine pr 97.6 0.00012 2.7E-09 67.9 5.5 50 10-59 77-130 (644)
228 COG1618 Predicted nucleotide k 97.6 9.6E-05 2.1E-09 56.6 4.0 34 33-66 6-40 (179)
229 PRK09354 recA recombinase A; P 97.5 0.00044 9.5E-09 61.0 8.6 96 20-124 47-147 (349)
230 PRK05541 adenylylsulfate kinas 97.5 0.00046 1E-08 55.4 8.2 36 31-66 6-41 (176)
231 KOG1969 DNA replication checkp 97.5 0.00018 4E-09 67.7 6.4 28 29-56 323-350 (877)
232 PRK06762 hypothetical protein; 97.5 0.0011 2.3E-08 52.8 10.1 25 32-56 2-26 (166)
233 KOG2035 Replication factor C, 97.5 0.0062 1.3E-07 51.2 14.4 208 10-234 14-259 (351)
234 PRK07667 uridine kinase; Provi 97.5 0.00027 5.8E-09 57.7 6.6 42 18-59 3-44 (193)
235 cd01121 Sms Sms (bacterial rad 97.5 0.0006 1.3E-08 61.2 9.1 48 20-67 70-117 (372)
236 COG0572 Udk Uridine kinase [Nu 97.5 0.001 2.2E-08 54.3 9.5 30 30-59 6-35 (218)
237 PRK04328 hypothetical protein; 97.5 0.00048 1E-08 58.6 8.0 48 20-67 11-58 (249)
238 PF08433 KTI12: Chromatin asso 97.5 0.00015 3.3E-09 62.1 4.8 34 33-66 2-35 (270)
239 KOG0727 26S proteasome regulat 97.5 0.0011 2.5E-08 54.6 9.5 30 30-59 187-216 (408)
240 PRK00771 signal recognition pa 97.5 0.0017 3.6E-08 59.5 11.4 29 31-59 94-122 (437)
241 TIGR01420 pilT_fam pilus retra 97.4 0.00064 1.4E-08 60.7 8.6 95 32-136 122-216 (343)
242 COG0465 HflB ATP-dependent Zn 97.4 0.0023 5E-08 60.2 12.3 174 10-210 151-357 (596)
243 PF03969 AFG1_ATPase: AFG1-lik 97.4 0.00033 7.1E-09 62.6 6.4 101 31-151 61-166 (362)
244 PF00910 RNA_helicase: RNA hel 97.4 8.6E-05 1.9E-09 54.2 2.2 25 35-59 1-25 (107)
245 cd03247 ABCC_cytochrome_bd The 97.4 0.0012 2.7E-08 53.1 9.2 25 32-56 28-52 (178)
246 PRK10923 glnG nitrogen regulat 97.4 0.0043 9.4E-08 58.2 14.0 49 9-57 138-186 (469)
247 PF13671 AAA_33: AAA domain; P 97.4 0.00046 9.9E-09 53.3 6.2 24 34-57 1-24 (143)
248 PRK11823 DNA repair protein Ra 97.4 0.00062 1.3E-08 62.9 8.0 50 18-67 66-115 (446)
249 PRK07132 DNA polymerase III su 97.4 0.013 2.8E-07 51.0 15.6 143 18-182 5-161 (299)
250 COG1066 Sms Predicted ATP-depe 97.4 0.0013 2.9E-08 58.2 9.2 48 19-67 80-127 (456)
251 KOG0736 Peroxisome assembly fa 97.4 0.0079 1.7E-07 57.5 14.8 69 34-126 707-775 (953)
252 TIGR00708 cobA cob(I)alamin ad 97.4 0.0013 2.8E-08 52.0 8.4 119 33-153 6-140 (173)
253 cd03223 ABCD_peroxisomal_ALDP 97.4 0.0013 2.9E-08 52.2 8.7 117 32-155 27-150 (166)
254 PRK11388 DNA-binding transcrip 97.4 0.0069 1.5E-07 59.1 15.1 49 9-57 325-373 (638)
255 PF06068 TIP49: TIP49 C-termin 97.3 0.00035 7.7E-09 61.2 5.4 58 4-61 19-79 (398)
256 PRK11889 flhF flagellar biosyn 97.3 0.0039 8.6E-08 55.7 11.9 29 31-59 240-268 (436)
257 PRK08118 topology modulation p 97.3 0.00021 4.5E-09 56.8 3.6 26 34-59 3-28 (167)
258 TIGR00150 HI0065_YjeE ATPase, 97.3 0.0004 8.7E-09 52.4 4.9 42 16-57 6-47 (133)
259 cd03214 ABC_Iron-Siderophores_ 97.3 0.0016 3.5E-08 52.5 8.9 122 32-155 25-160 (180)
260 TIGR03499 FlhF flagellar biosy 97.3 0.0017 3.6E-08 56.4 9.4 29 31-59 193-221 (282)
261 COG1136 SalX ABC-type antimicr 97.3 0.002 4.4E-08 53.1 9.3 60 99-159 144-209 (226)
262 PF08298 AAA_PrkA: PrkA AAA do 97.3 0.00052 1.1E-08 60.0 6.1 55 5-59 57-115 (358)
263 cd03115 SRP The signal recogni 97.3 0.0014 3E-08 52.5 8.2 26 34-59 2-27 (173)
264 cd03228 ABCC_MRP_Like The MRP 97.3 0.0022 4.7E-08 51.2 9.3 27 31-57 27-53 (171)
265 KOG0728 26S proteasome regulat 97.3 0.0068 1.5E-07 50.1 11.9 148 11-182 148-330 (404)
266 COG2884 FtsE Predicted ATPase 97.3 0.0019 4.2E-08 51.1 8.5 60 101-160 141-204 (223)
267 TIGR02858 spore_III_AA stage I 97.3 0.0017 3.6E-08 55.7 8.9 116 30-155 109-231 (270)
268 PRK14974 cell division protein 97.3 0.0026 5.6E-08 56.3 10.3 29 31-59 139-167 (336)
269 COG1224 TIP49 DNA helicase TIP 97.3 0.00062 1.4E-08 59.0 6.2 58 4-61 34-94 (450)
270 PRK05917 DNA polymerase III su 97.3 0.015 3.1E-07 50.2 14.6 138 19-170 7-154 (290)
271 PF00437 T2SE: Type II/IV secr 97.3 0.0008 1.7E-08 58.1 7.1 110 10-133 105-215 (270)
272 TIGR00416 sms DNA repair prote 97.3 0.0016 3.5E-08 60.2 9.3 49 19-67 81-129 (454)
273 TIGR01359 UMP_CMP_kin_fam UMP- 97.3 0.0029 6.4E-08 51.1 9.9 24 34-57 1-24 (183)
274 KOG0651 26S proteasome regulat 97.3 0.0023 4.9E-08 54.6 9.2 30 31-60 165-194 (388)
275 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.3 0.0015 3.1E-08 50.6 7.6 25 32-56 26-50 (144)
276 PF03308 ArgK: ArgK protein; 97.2 0.00074 1.6E-08 56.4 6.0 43 17-59 14-56 (266)
277 COG0529 CysC Adenylylsulfate k 97.2 0.00068 1.5E-08 52.9 5.4 32 30-61 21-52 (197)
278 PF13238 AAA_18: AAA domain; P 97.2 0.00027 6E-09 53.3 3.3 22 35-56 1-22 (129)
279 PRK00889 adenylylsulfate kinas 97.2 0.0023 4.9E-08 51.4 8.8 28 32-59 4-31 (175)
280 TIGR03574 selen_PSTK L-seryl-t 97.2 0.0011 2.3E-08 56.6 7.2 26 34-59 1-26 (249)
281 PF07728 AAA_5: AAA domain (dy 97.2 0.00025 5.4E-09 54.5 3.1 23 35-57 2-24 (139)
282 COG0468 RecA RecA/RadA recombi 97.2 0.0012 2.7E-08 56.4 7.4 95 24-124 52-150 (279)
283 PRK06547 hypothetical protein; 97.2 0.00061 1.3E-08 54.3 5.2 28 29-56 12-39 (172)
284 PRK05986 cob(I)alamin adenolsy 97.2 0.00099 2.2E-08 53.4 6.3 120 32-153 22-158 (191)
285 TIGR00455 apsK adenylylsulfate 97.2 0.0025 5.3E-08 51.6 8.7 29 31-59 17-45 (184)
286 COG0563 Adk Adenylate kinase a 97.2 0.0026 5.6E-08 51.0 8.6 22 35-56 3-24 (178)
287 cd03238 ABC_UvrA The excision 97.2 0.0022 4.8E-08 51.3 8.2 22 32-53 21-42 (176)
288 PRK12724 flagellar biosynthesi 97.2 0.0041 8.8E-08 56.2 10.6 25 32-56 223-247 (432)
289 PHA02244 ATPase-like protein 97.2 0.00047 1E-08 60.9 4.5 49 7-59 94-146 (383)
290 TIGR02533 type_II_gspE general 97.2 0.0023 5E-08 59.7 9.3 119 12-151 224-343 (486)
291 PRK13765 ATP-dependent proteas 97.2 0.00089 1.9E-08 64.2 6.7 62 3-68 25-87 (637)
292 COG4240 Predicted kinase [Gene 97.2 0.0012 2.6E-08 53.7 6.3 89 29-117 47-135 (300)
293 cd03246 ABCC_Protease_Secretio 97.2 0.002 4.3E-08 51.6 7.8 25 32-56 28-52 (173)
294 KOG3928 Mitochondrial ribosome 97.2 0.018 4E-07 51.1 14.1 55 161-218 402-460 (461)
295 cd01122 GP4d_helicase GP4d_hel 97.2 0.0047 1E-07 53.4 10.7 37 31-67 29-66 (271)
296 COG1875 NYN ribonuclease and A 97.2 0.0041 8.9E-08 54.3 9.9 41 11-53 226-266 (436)
297 PRK07261 topology modulation p 97.2 0.00034 7.4E-09 55.8 3.3 23 34-56 2-24 (171)
298 PRK12723 flagellar biosynthesi 97.2 0.0062 1.3E-07 55.0 11.5 27 31-57 173-199 (388)
299 PF13086 AAA_11: AAA domain; P 97.2 0.00099 2.1E-08 56.0 6.3 37 16-56 5-41 (236)
300 KOG1051 Chaperone HSP104 and r 97.2 0.0042 9.1E-08 61.1 11.1 104 8-126 561-671 (898)
301 cd02019 NK Nucleoside/nucleoti 97.2 0.00043 9.2E-09 46.0 3.1 22 35-56 2-23 (69)
302 PF07724 AAA_2: AAA domain (Cd 97.1 0.0012 2.5E-08 52.6 6.0 41 33-74 4-45 (171)
303 COG4619 ABC-type uncharacteriz 97.1 0.0022 4.7E-08 49.7 7.1 25 32-56 29-53 (223)
304 cd01130 VirB11-like_ATPase Typ 97.1 0.0019 4.1E-08 52.4 7.4 92 33-133 26-118 (186)
305 PF00485 PRK: Phosphoribulokin 97.1 0.00046 1E-08 56.4 3.8 26 34-59 1-26 (194)
306 PRK14722 flhF flagellar biosyn 97.1 0.0028 6E-08 56.7 8.8 27 31-57 136-162 (374)
307 cd03222 ABC_RNaseL_inhibitor T 97.1 0.0023 5E-08 51.2 7.6 25 32-56 25-49 (177)
308 PF12775 AAA_7: P-loop contain 97.1 0.00056 1.2E-08 58.8 4.3 26 33-58 34-59 (272)
309 PF13245 AAA_19: Part of AAA d 97.1 0.00053 1.1E-08 46.4 3.3 24 33-56 11-34 (76)
310 PF07726 AAA_3: ATPase family 97.1 0.00033 7.2E-09 51.9 2.5 28 35-62 2-29 (131)
311 PRK09270 nucleoside triphospha 97.1 0.00095 2.1E-08 56.1 5.6 32 29-60 30-61 (229)
312 PF03266 NTPase_1: NTPase; In 97.1 0.0006 1.3E-08 54.1 4.0 24 35-58 2-25 (168)
313 PRK10436 hypothetical protein; 97.1 0.0036 7.7E-08 57.9 9.5 120 12-152 200-320 (462)
314 cd03216 ABC_Carb_Monos_I This 97.1 0.0012 2.7E-08 52.2 5.8 114 32-154 26-143 (163)
315 COG2804 PulE Type II secretory 97.1 0.0056 1.2E-07 56.0 10.5 115 18-153 247-361 (500)
316 PRK08233 hypothetical protein; 97.1 0.00051 1.1E-08 55.5 3.6 26 32-57 3-28 (182)
317 PRK07276 DNA polymerase III su 97.1 0.078 1.7E-06 45.9 17.0 68 114-182 103-174 (290)
318 cd03281 ABC_MSH5_euk MutS5 hom 97.1 0.00053 1.1E-08 56.8 3.7 23 32-54 29-51 (213)
319 TIGR00390 hslU ATP-dependent p 97.1 0.00073 1.6E-08 60.7 4.7 54 7-60 10-75 (441)
320 PRK15115 response regulator Gl 97.1 0.011 2.4E-07 55.1 12.8 49 9-57 134-182 (444)
321 PF03193 DUF258: Protein of un 97.1 0.00086 1.9E-08 52.3 4.5 36 15-55 23-58 (161)
322 TIGR03877 thermo_KaiC_1 KaiC d 97.1 0.0013 2.7E-08 55.7 5.9 49 19-67 8-56 (237)
323 TIGR03575 selen_PSTK_euk L-ser 97.1 0.0026 5.5E-08 56.2 7.9 24 35-58 2-25 (340)
324 TIGR02238 recomb_DMC1 meiotic 97.1 0.0044 9.5E-08 54.4 9.4 36 20-55 84-119 (313)
325 COG3910 Predicted ATPase [Gene 97.1 0.0053 1.2E-07 48.5 8.7 25 31-55 36-60 (233)
326 TIGR02236 recomb_radA DNA repa 97.1 0.0033 7.1E-08 55.5 8.7 37 21-57 84-120 (310)
327 COG1703 ArgK Putative periplas 97.1 0.0012 2.5E-08 56.1 5.5 43 19-61 38-80 (323)
328 PRK12726 flagellar biosynthesi 97.1 0.0078 1.7E-07 53.6 10.7 36 31-66 205-240 (407)
329 PTZ00301 uridine kinase; Provi 97.0 0.00066 1.4E-08 55.9 3.9 28 32-59 3-30 (210)
330 TIGR02655 circ_KaiC circadian 97.0 0.0021 4.6E-08 60.3 7.7 50 18-67 249-298 (484)
331 PF08423 Rad51: Rad51; InterP 97.0 0.0017 3.6E-08 55.4 6.4 25 32-56 38-62 (256)
332 TIGR03878 thermo_KaiC_2 KaiC d 97.0 0.0011 2.4E-08 56.7 5.3 37 31-67 35-71 (259)
333 TIGR00064 ftsY signal recognit 97.0 0.0056 1.2E-07 52.7 9.6 36 31-67 71-106 (272)
334 PF05970 PIF1: PIF1-like helic 97.0 0.002 4.4E-08 58.1 7.2 40 19-60 11-50 (364)
335 cd01124 KaiC KaiC is a circadi 97.0 0.00075 1.6E-08 54.7 4.1 33 35-67 2-34 (187)
336 PRK05480 uridine/cytidine kina 97.0 0.00079 1.7E-08 55.7 4.2 27 30-56 4-30 (209)
337 PRK04301 radA DNA repair and r 97.0 0.0032 7E-08 55.7 8.3 38 20-57 90-127 (317)
338 PRK05201 hslU ATP-dependent pr 97.0 0.0012 2.5E-08 59.5 5.4 54 7-60 13-78 (443)
339 cd03230 ABC_DR_subfamily_A Thi 97.0 0.0032 6.9E-08 50.4 7.5 25 32-56 26-50 (173)
340 COG0467 RAD55 RecA-superfamily 97.0 0.0015 3.2E-08 56.1 5.9 45 23-67 14-58 (260)
341 PRK10867 signal recognition pa 97.0 0.0039 8.4E-08 57.1 8.8 29 31-59 99-127 (433)
342 TIGR00764 lon_rel lon-related 97.0 0.002 4.3E-08 61.9 7.3 61 3-67 12-73 (608)
343 COG0714 MoxR-like ATPases [Gen 97.0 0.0011 2.4E-08 58.9 5.3 49 8-60 23-71 (329)
344 PRK14738 gmk guanylate kinase; 97.0 0.00074 1.6E-08 55.7 3.7 31 25-55 6-36 (206)
345 COG1419 FlhF Flagellar GTP-bin 97.0 0.0083 1.8E-07 53.5 10.3 26 32-57 203-228 (407)
346 TIGR02524 dot_icm_DotB Dot/Icm 97.0 0.003 6.5E-08 56.5 7.7 108 32-151 134-244 (358)
347 TIGR02525 plasmid_TraJ plasmid 97.0 0.0024 5.2E-08 57.3 7.0 95 33-136 150-246 (372)
348 PF00625 Guanylate_kin: Guanyl 97.0 0.00095 2.1E-08 54.0 4.1 35 32-66 2-36 (183)
349 PF00406 ADK: Adenylate kinase 97.0 0.0023 5.1E-08 49.9 6.2 20 37-56 1-20 (151)
350 PRK04040 adenylate kinase; Pro 97.0 0.00098 2.1E-08 54.0 4.1 25 33-57 3-27 (188)
351 PF06309 Torsin: Torsin; Inte 97.0 0.002 4.4E-08 47.7 5.4 48 9-56 25-77 (127)
352 PTZ00035 Rad51 protein; Provis 97.0 0.0043 9.4E-08 55.1 8.5 38 20-57 106-143 (337)
353 cd00227 CPT Chloramphenicol (C 96.9 0.00091 2E-08 53.7 3.8 26 33-58 3-28 (175)
354 PLN03187 meiotic recombination 96.9 0.0024 5.2E-08 56.6 6.7 34 22-55 116-149 (344)
355 COG0194 Gmk Guanylate kinase [ 96.9 0.0011 2.3E-08 52.4 3.9 25 32-56 4-28 (191)
356 TIGR01360 aden_kin_iso1 adenyl 96.9 0.00085 1.8E-08 54.5 3.6 25 32-56 3-27 (188)
357 cd03213 ABCG_EPDR ABCG transpo 96.9 0.0054 1.2E-07 50.1 8.4 26 31-56 34-59 (194)
358 PF13481 AAA_25: AAA domain; P 96.9 0.00093 2E-08 54.5 3.9 26 33-58 33-58 (193)
359 PRK05537 bifunctional sulfate 96.9 0.0023 4.9E-08 60.9 6.9 52 7-58 367-418 (568)
360 PF00154 RecA: recA bacterial 96.9 0.0046 1E-07 54.0 8.2 101 20-126 40-142 (322)
361 TIGR02782 TrbB_P P-type conjug 96.9 0.0087 1.9E-07 52.3 10.0 88 33-133 133-222 (299)
362 PRK00131 aroK shikimate kinase 96.9 0.0009 1.9E-08 53.6 3.7 26 32-57 4-29 (175)
363 TIGR00235 udk uridine kinase. 96.9 0.0011 2.4E-08 54.8 4.2 28 30-57 4-31 (207)
364 KOG0742 AAA+-type ATPase [Post 96.9 0.0046 9.9E-08 54.8 8.0 31 30-60 382-412 (630)
365 PF00006 ATP-synt_ab: ATP synt 96.9 0.003 6.6E-08 52.1 6.7 27 33-59 16-42 (215)
366 TIGR01818 ntrC nitrogen regula 96.9 0.015 3.2E-07 54.5 12.3 49 9-57 134-182 (463)
367 PRK03839 putative kinase; Prov 96.9 0.00091 2E-08 53.9 3.6 25 34-58 2-26 (180)
368 KOG0652 26S proteasome regulat 96.9 0.045 9.7E-07 45.7 13.2 48 10-57 172-230 (424)
369 KOG0726 26S proteasome regulat 96.9 0.014 2.9E-07 49.5 10.3 49 11-59 187-246 (440)
370 PRK05973 replicative DNA helic 96.9 0.0019 4.1E-08 54.0 5.4 37 31-67 63-99 (237)
371 COG3854 SpoIIIAA ncharacterize 96.9 0.0063 1.4E-07 49.8 8.0 101 35-151 140-251 (308)
372 PRK03846 adenylylsulfate kinas 96.9 0.0032 6.9E-08 51.6 6.7 37 30-66 22-58 (198)
373 PRK05703 flhF flagellar biosyn 96.9 0.011 2.4E-07 54.3 10.8 26 32-57 221-246 (424)
374 PRK05342 clpX ATP-dependent pr 96.9 0.0015 3.3E-08 59.4 5.2 52 8-59 70-135 (412)
375 PF03205 MobB: Molybdopterin g 96.9 0.0015 3.3E-08 50.1 4.4 28 33-60 1-28 (140)
376 COG1121 ZnuC ABC-type Mn/Zn tr 96.9 0.0038 8.2E-08 52.4 7.0 23 32-54 30-52 (254)
377 COG2874 FlaH Predicted ATPases 96.9 0.014 3.1E-07 47.2 9.8 48 20-67 16-63 (235)
378 cd03232 ABC_PDR_domain2 The pl 96.9 0.0046 1E-07 50.4 7.4 24 32-55 33-56 (192)
379 cd00984 DnaB_C DnaB helicase C 96.9 0.0088 1.9E-07 50.7 9.4 37 31-67 12-49 (242)
380 COG2805 PilT Tfp pilus assembl 96.9 0.01 2.2E-07 50.6 9.3 107 31-151 124-230 (353)
381 COG1643 HrpA HrpA-like helicas 96.8 0.013 2.8E-07 57.9 11.4 128 16-152 53-204 (845)
382 KOG0924 mRNA splicing factor A 96.8 0.0055 1.2E-07 57.6 8.3 115 33-152 372-509 (1042)
383 cd00071 GMPK Guanosine monopho 96.8 0.00092 2E-08 51.2 2.9 26 34-59 1-26 (137)
384 TIGR02538 type_IV_pilB type IV 96.8 0.007 1.5E-07 57.8 9.4 116 16-152 303-418 (564)
385 TIGR02768 TraA_Ti Ti-type conj 96.8 0.0088 1.9E-07 59.1 10.3 27 33-59 369-395 (744)
386 PRK12678 transcription termina 96.8 0.0036 7.8E-08 58.4 7.0 38 32-69 416-454 (672)
387 PRK05818 DNA polymerase III su 96.8 0.037 8E-07 46.8 12.4 56 115-170 88-147 (261)
388 KOG1532 GTPase XAB1, interacts 96.8 0.0043 9.2E-08 51.9 6.7 92 31-124 18-124 (366)
389 KOG1942 DNA helicase, TBP-inte 96.8 0.0027 5.8E-08 53.7 5.6 58 4-61 33-93 (456)
390 TIGR03881 KaiC_arch_4 KaiC dom 96.8 0.003 6.4E-08 53.1 6.1 48 20-67 8-55 (229)
391 cd02021 GntK Gluconate kinase 96.8 0.00097 2.1E-08 52.0 2.9 23 34-56 1-23 (150)
392 TIGR01425 SRP54_euk signal rec 96.8 0.013 2.8E-07 53.5 10.3 29 31-59 99-127 (429)
393 cd01428 ADK Adenylate kinase ( 96.8 0.015 3.1E-07 47.4 10.0 22 35-56 2-23 (194)
394 PRK10751 molybdopterin-guanine 96.8 0.0025 5.4E-08 50.5 5.1 29 31-59 5-33 (173)
395 PF06414 Zeta_toxin: Zeta toxi 96.8 0.0031 6.8E-08 51.7 6.0 29 29-57 12-40 (199)
396 KOG0736 Peroxisome assembly fa 96.8 0.041 9E-07 52.9 13.8 49 12-60 404-459 (953)
397 PRK09435 membrane ATPase/prote 96.8 0.0037 8E-08 55.1 6.7 41 19-59 43-83 (332)
398 cd03233 ABC_PDR_domain1 The pl 96.8 0.011 2.5E-07 48.5 9.3 27 31-57 32-58 (202)
399 COG2274 SunT ABC-type bacterio 96.8 0.0036 7.8E-08 61.0 7.2 23 32-54 499-521 (709)
400 TIGR01069 mutS2 MutS2 family p 96.8 0.0022 4.8E-08 63.2 5.7 24 32-55 322-345 (771)
401 PF02456 Adeno_IVa2: Adenoviru 96.8 0.015 3.2E-07 49.7 9.7 35 32-66 87-122 (369)
402 cd02028 UMPK_like Uridine mono 96.8 0.0017 3.7E-08 52.3 4.2 26 34-59 1-26 (179)
403 TIGR02322 phosphon_PhnN phosph 96.8 0.0013 2.8E-08 53.0 3.5 25 33-57 2-26 (179)
404 TIGR02788 VirB11 P-type DNA tr 96.8 0.0083 1.8E-07 52.8 8.8 92 32-132 144-235 (308)
405 KOG0922 DEAH-box RNA helicase 96.8 0.0076 1.6E-07 56.5 8.7 124 19-151 57-203 (674)
406 PRK00279 adk adenylate kinase; 96.8 0.0077 1.7E-07 50.1 8.2 23 35-57 3-25 (215)
407 TIGR00959 ffh signal recogniti 96.8 0.0085 1.8E-07 54.8 9.0 26 32-57 99-124 (428)
408 PRK14737 gmk guanylate kinase; 96.8 0.0013 2.9E-08 53.1 3.4 26 31-56 3-28 (186)
409 cd03217 ABC_FeS_Assembly ABC-t 96.7 0.0053 1.2E-07 50.4 7.0 25 31-55 25-49 (200)
410 PTZ00088 adenylate kinase 1; P 96.7 0.0079 1.7E-07 50.3 8.0 23 35-57 9-31 (229)
411 PRK13764 ATPase; Provisional 96.7 0.0083 1.8E-07 57.1 9.0 85 33-133 258-342 (602)
412 COG5635 Predicted NTPase (NACH 96.7 0.0022 4.8E-08 64.2 5.6 141 33-180 223-375 (824)
413 KOG3347 Predicted nucleotide k 96.7 0.0014 3E-08 49.5 3.0 25 33-57 8-32 (176)
414 COG1102 Cmk Cytidylate kinase 96.7 0.0015 3.2E-08 50.3 3.2 26 34-59 2-27 (179)
415 cd00820 PEPCK_HprK Phosphoenol 96.7 0.0016 3.6E-08 46.9 3.3 22 32-53 15-36 (107)
416 cd00046 DEXDc DEAD-like helica 96.7 0.006 1.3E-07 46.3 6.8 25 34-58 2-26 (144)
417 PRK09519 recA DNA recombinatio 96.7 0.0068 1.5E-07 59.2 8.4 96 19-124 46-147 (790)
418 PF02367 UPF0079: Uncharacteri 96.7 0.0021 4.5E-08 47.8 3.9 27 31-57 14-40 (123)
419 KOG0737 AAA+-type ATPase [Post 96.7 0.012 2.5E-07 51.6 8.9 31 31-61 126-156 (386)
420 PRK05439 pantothenate kinase; 96.7 0.0026 5.6E-08 55.4 5.1 30 29-58 83-112 (311)
421 COG1116 TauB ABC-type nitrate/ 96.7 0.0014 3.1E-08 54.3 3.2 23 32-54 29-51 (248)
422 COG1485 Predicted ATPase [Gene 96.7 0.0069 1.5E-07 52.8 7.5 101 31-151 64-169 (367)
423 PRK00625 shikimate kinase; Pro 96.7 0.0016 3.6E-08 51.9 3.5 25 34-58 2-26 (173)
424 PRK12597 F0F1 ATP synthase sub 96.7 0.0086 1.9E-07 55.1 8.5 29 31-59 142-170 (461)
425 cd03243 ABC_MutS_homologs The 96.7 0.0012 2.7E-08 54.3 2.8 22 33-54 30-51 (202)
426 cd00267 ABC_ATPase ABC (ATP-bi 96.7 0.0032 7E-08 49.4 5.1 116 32-157 25-144 (157)
427 PF13555 AAA_29: P-loop contai 96.7 0.002 4.4E-08 41.2 3.2 24 33-56 24-47 (62)
428 TIGR02239 recomb_RAD51 DNA rep 96.7 0.0063 1.4E-07 53.6 7.3 36 20-55 84-119 (316)
429 PRK10463 hydrogenase nickel in 96.7 0.0047 1E-07 53.1 6.3 36 30-65 102-137 (290)
430 cd01125 repA Hexameric Replica 96.7 0.0094 2E-07 50.5 8.1 23 34-56 3-25 (239)
431 PRK06217 hypothetical protein; 96.7 0.0016 3.5E-08 52.7 3.3 24 34-57 3-26 (183)
432 PRK08533 flagellar accessory p 96.7 0.0021 4.4E-08 54.0 4.0 38 30-67 22-59 (230)
433 PF09848 DUF2075: Uncharacteri 96.7 0.0095 2.1E-07 53.6 8.5 35 33-67 2-38 (352)
434 COG1936 Predicted nucleotide k 96.7 0.0015 3.2E-08 50.9 2.8 20 34-53 2-21 (180)
435 TIGR00750 lao LAO/AO transport 96.7 0.0045 9.9E-08 54.3 6.3 42 18-59 20-61 (300)
436 KOG0732 AAA+-type ATPase conta 96.7 0.032 6.9E-07 55.8 12.5 161 30-212 297-478 (1080)
437 COG4608 AppF ABC-type oligopep 96.7 0.0073 1.6E-07 50.9 7.1 124 32-158 39-175 (268)
438 TIGR02868 CydC thiol reductant 96.7 0.007 1.5E-07 57.7 8.1 25 31-55 360-384 (529)
439 cd03280 ABC_MutS2 MutS2 homolo 96.7 0.0022 4.8E-08 52.7 4.1 22 32-53 28-49 (200)
440 PF08477 Miro: Miro-like prote 96.7 0.0018 3.9E-08 48.1 3.3 21 35-55 2-22 (119)
441 PRK15453 phosphoribulokinase; 96.7 0.0033 7.2E-08 53.6 5.1 30 30-59 3-32 (290)
442 PRK14527 adenylate kinase; Pro 96.6 0.0019 4.2E-08 52.6 3.7 27 31-57 5-31 (191)
443 cd03254 ABCC_Glucan_exporter_l 96.6 0.019 4E-07 48.3 9.8 25 32-56 29-53 (229)
444 PRK11361 acetoacetate metaboli 96.6 0.053 1.2E-06 50.7 13.7 48 10-57 144-191 (457)
445 PRK09280 F0F1 ATP synthase sub 96.6 0.01 2.2E-07 54.5 8.4 31 31-61 143-173 (463)
446 PRK10875 recD exonuclease V su 96.6 0.0091 2E-07 57.3 8.5 27 32-58 167-193 (615)
447 KOG0740 AAA+-type ATPase [Post 96.6 0.014 3E-07 52.7 9.1 30 30-59 184-213 (428)
448 PRK10416 signal recognition pa 96.6 0.0065 1.4E-07 53.5 7.0 29 31-59 113-141 (318)
449 PRK13833 conjugal transfer pro 96.6 0.0079 1.7E-07 52.9 7.4 87 33-133 145-233 (323)
450 TIGR01447 recD exodeoxyribonuc 96.6 0.0073 1.6E-07 57.7 7.7 26 32-57 160-185 (586)
451 PRK10646 ADP-binding protein; 96.6 0.0041 8.9E-08 48.1 5.0 44 14-57 10-53 (153)
452 TIGR01039 atpD ATP synthase, F 96.6 0.011 2.4E-07 54.1 8.4 37 31-67 142-178 (461)
453 cd02020 CMPK Cytidine monophos 96.6 0.002 4.3E-08 49.9 3.2 24 34-57 1-24 (147)
454 KOG0058 Peptide exporter, ABC 96.6 0.0044 9.4E-08 58.9 5.9 24 31-54 493-516 (716)
455 TIGR00382 clpX endopeptidase C 96.6 0.0037 8E-08 56.8 5.3 51 8-58 76-142 (413)
456 PRK14529 adenylate kinase; Pro 96.6 0.017 3.7E-07 48.0 8.8 24 35-58 3-26 (223)
457 TIGR03263 guanyl_kin guanylate 96.6 0.0017 3.7E-08 52.3 2.9 24 33-56 2-25 (180)
458 PRK05800 cobU adenosylcobinami 96.6 0.015 3.3E-07 46.2 8.2 24 34-57 3-26 (170)
459 TIGR01313 therm_gnt_kin carboh 96.6 0.0016 3.5E-08 51.5 2.7 23 35-57 1-23 (163)
460 cd03369 ABCC_NFT1 Domain 2 of 96.6 0.03 6.4E-07 46.2 10.3 24 32-55 34-57 (207)
461 PRK00300 gmk guanylate kinase; 96.6 0.0021 4.5E-08 53.0 3.4 26 32-57 5-30 (205)
462 PRK13947 shikimate kinase; Pro 96.6 0.0022 4.8E-08 51.2 3.4 26 34-59 3-28 (171)
463 PF06745 KaiC: KaiC; InterPro 96.6 0.0021 4.6E-08 53.9 3.4 47 21-67 8-55 (226)
464 COG1672 Predicted ATPase (AAA+ 96.5 0.015 3.2E-07 52.5 9.0 56 9-66 2-57 (359)
465 KOG2170 ATPase of the AAA+ sup 96.5 0.01 2.2E-07 50.5 7.1 42 18-59 95-137 (344)
466 smart00072 GuKc Guanylate kina 96.5 0.0024 5.2E-08 51.7 3.5 25 33-57 3-27 (184)
467 cd03289 ABCC_CFTR2 The CFTR su 96.5 0.036 7.9E-07 47.9 10.9 26 32-57 30-55 (275)
468 KOG0730 AAA+-type ATPase [Post 96.5 0.017 3.7E-07 54.4 9.2 151 31-208 217-386 (693)
469 PRK09302 circadian clock prote 96.5 0.0078 1.7E-07 57.0 7.4 103 18-124 259-372 (509)
470 TIGR01967 DEAH_box_HrpA ATP-de 96.5 0.012 2.6E-07 60.7 9.0 36 18-57 72-107 (1283)
471 PRK12339 2-phosphoglycerate ki 96.5 0.0028 6E-08 51.7 3.7 25 32-56 3-27 (197)
472 TIGR03880 KaiC_arch_3 KaiC dom 96.5 0.0056 1.2E-07 51.3 5.7 47 21-67 5-51 (224)
473 cd02023 UMPK Uridine monophosp 96.5 0.0021 4.6E-08 52.7 3.1 23 34-56 1-23 (198)
474 PRK13900 type IV secretion sys 96.5 0.0061 1.3E-07 54.0 6.1 93 33-133 161-253 (332)
475 COG0378 HypB Ni2+-binding GTPa 96.5 0.0041 8.9E-08 49.5 4.4 36 33-68 14-49 (202)
476 PRK14530 adenylate kinase; Pro 96.5 0.0025 5.5E-08 53.0 3.5 25 33-57 4-28 (215)
477 cd02024 NRK1 Nicotinamide ribo 96.5 0.0021 4.6E-08 51.8 2.9 23 34-56 1-23 (187)
478 cd01135 V_A-ATPase_B V/A-type 96.5 0.019 4E-07 49.0 8.7 27 31-57 68-94 (276)
479 PRK13407 bchI magnesium chelat 96.5 0.0034 7.3E-08 55.5 4.4 48 7-56 6-53 (334)
480 PRK12727 flagellar biosynthesi 96.5 0.012 2.6E-07 54.8 8.1 29 31-59 349-377 (559)
481 PRK13949 shikimate kinase; Pro 96.5 0.0027 5.8E-08 50.6 3.4 25 34-58 3-27 (169)
482 COG3640 CooC CO dehydrogenase 96.5 0.0047 1E-07 50.6 4.8 36 34-69 2-37 (255)
483 COG4618 ArpD ABC-type protease 96.5 0.0061 1.3E-07 55.6 5.9 23 32-54 362-384 (580)
484 PRK06761 hypothetical protein; 96.5 0.0036 7.8E-08 53.8 4.4 27 33-59 4-30 (282)
485 KOG0738 AAA+-type ATPase [Post 96.5 0.019 4.1E-07 50.7 8.7 27 31-57 244-270 (491)
486 cd00464 SK Shikimate kinase (S 96.5 0.0028 6.2E-08 49.5 3.5 23 35-57 2-24 (154)
487 PF10923 DUF2791: P-loop Domai 96.5 0.027 5.9E-07 51.1 9.9 87 8-96 24-115 (416)
488 cd02025 PanK Pantothenate kina 96.5 0.0023 5E-08 53.3 3.0 25 34-58 1-25 (220)
489 PLN02200 adenylate kinase fami 96.4 0.0033 7.1E-08 52.9 3.9 26 31-56 42-67 (234)
490 cd02029 PRK_like Phosphoribulo 96.4 0.014 3E-07 49.5 7.5 26 34-59 1-26 (277)
491 PF13521 AAA_28: AAA domain; P 96.4 0.0026 5.7E-08 50.3 3.1 21 35-55 2-22 (163)
492 TIGR00176 mobB molybdopterin-g 96.4 0.0039 8.5E-08 48.8 4.0 26 34-59 1-26 (155)
493 PRK13889 conjugal transfer rel 96.4 0.011 2.4E-07 59.5 8.0 27 33-59 363-389 (988)
494 PF01078 Mg_chelatase: Magnesi 96.4 0.0061 1.3E-07 49.5 5.1 42 10-55 4-45 (206)
495 PRK14723 flhF flagellar biosyn 96.4 0.097 2.1E-06 51.3 14.0 25 32-56 185-209 (767)
496 PRK10078 ribose 1,5-bisphospho 96.4 0.0028 6.1E-08 51.4 3.2 24 33-56 3-26 (186)
497 PLN03186 DNA repair protein RA 96.4 0.028 6.1E-07 50.0 9.6 35 21-55 112-146 (342)
498 COG1126 GlnQ ABC-type polar am 96.4 0.0029 6.3E-08 51.2 3.0 22 32-53 28-49 (240)
499 COG1120 FepC ABC-type cobalami 96.4 0.008 1.7E-07 50.7 5.7 23 32-54 28-50 (258)
500 PHA02530 pseT polynucleotide k 96.4 0.0033 7.1E-08 55.2 3.6 24 33-56 3-26 (300)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=3.4e-41 Score=341.01 Aligned_cols=343 Identities=36% Similarity=0.651 Sum_probs=285.6
Q ss_pred CCCCCCcCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeec--ccc---cc---
Q 045677 3 SELEIPKELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADV--RER---CD--- 74 (352)
Q Consensus 3 ~~~~~~~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~--~~~---~~--- 74 (352)
+++...+++|||+..++++..++.-..++.++|.|+|++|+||||||+.++..+..+|...+|+... ... ..
T Consensus 178 ~~~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~~~~~~~~ 257 (1153)
T PLN03210 178 TPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSMEIYSSAN 257 (1153)
T ss_pred ccCcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccchhhccccc
Confidence 4556678899999999999999886667789999999999999999999999999999888877431 100 00
Q ss_pred --CCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHHhhhCCceEEEEEeCCCChhhhhhhhCCCCCCCCCceEEEEeCc
Q 045677 75 --KEGSVISLQKQLLSDLLMLADNSIRNVYDGVNMIGSRLRHKKVLLLIDDVADVEQLRGLFGKRDWFGLGSMIIITTRD 152 (352)
Q Consensus 75 --~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~~~~~~l~~~~~~~~~~~~iiitsr~ 152 (352)
.......+...++..+.......... ...+++.+.++++||||||+|+...++.+.......+.|++||||||+
T Consensus 258 ~~~~~~~~~l~~~~l~~il~~~~~~~~~----~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd 333 (1153)
T PLN03210 258 PDDYNMKLHLQRAFLSEILDKKDIKIYH----LGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKD 333 (1153)
T ss_pred ccccchhHHHHHHHHHHHhCCCCcccCC----HHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCc
Confidence 00111233344444443322221111 245677788999999999999999998888766666789999999999
Q ss_pred hhHhhhcCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchhHHHHHHhhcCCChhHHHHHHHH
Q 045677 153 EHLLKLHRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLAVDVLVSFLFGRPVDQWRSTQER 232 (352)
Q Consensus 153 ~~~~~~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~~l~~~~~~~~~~~~~~ 232 (352)
..+.........++++.++.++++++|.+.++....+++...+...+++++|+|+||||+.+|+.++.++..+|...+++
T Consensus 334 ~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~ 413 (1153)
T PLN03210 334 KHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPR 413 (1153)
T ss_pred HHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 98877665667999999999999999999998877666677889999999999999999999999999999999999999
Q ss_pred HccCCchhHHHHHHhhhccCcH-hhhhhhhhhccCCCCCCHHHHHHHHHhcCCCchhchHHHhhccceeecCCCceehhH
Q 045677 233 LKRDPENKILGILQISFDGLKE-AEKNIFLDVACFYKWENRDYVSKILDSCGFDPIIGISVLIEKSLLTVRENDRLWMHD 311 (352)
Q Consensus 233 ~~~~~~~~~~~~l~~~~~~L~~-~~~~~l~~ls~~~~~~~~~~l~~~~~~~~~~~~~~l~~L~~~~li~~~~~~~~~~H~ 311 (352)
+....+..+..++..+|+.|++ .+|.+|.++++|+.+...+.+..++...+......++.|++++||+.. .+++.||+
T Consensus 414 L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l~~L~~ksLi~~~-~~~~~MHd 492 (1153)
T PLN03210 414 LRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVR-EDIVEMHS 492 (1153)
T ss_pred HHhCccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchhChHHHHhcCCEEEc-CCeEEhhh
Confidence 9887788999999999999976 589999999999999999988888888888888889999999999886 56799999
Q ss_pred HHHHHHHHHHhhcCCCCCCCcccccccchhhHhhccCCCC
Q 045677 312 LLQEMGQQIVRRQSPDEPGRRSRLWEEADVSHVLSQNTVS 351 (352)
Q Consensus 312 lir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 351 (352)
++|++++++++++. ..++.+.++|.+.++.+++.+..|+
T Consensus 493 Ll~~~~r~i~~~~~-~~~~~r~~l~~~~di~~vl~~~~g~ 531 (1153)
T PLN03210 493 LLQEMGKEIVRAQS-NEPGEREFLVDAKDICDVLEDNTGT 531 (1153)
T ss_pred HHHHHHHHHHHhhc-CCCCcceeEeCHHHHHHHHHhCccc
Confidence 99999999998875 6789999999999999999887765
No 2
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=4.3e-39 Score=311.06 Aligned_cols=306 Identities=30% Similarity=0.388 Sum_probs=261.1
Q ss_pred ccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHH---hcCCCcceeEeeeccccccCCCcHHHHHHHHHH
Q 045677 12 VGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDL---MSHEFDGSSFLADVRERCDKEGSVISLQKQLLS 88 (352)
Q Consensus 12 vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 88 (352)
||.+..++++.+.|... +..++.|+|+||+||||||+++.++ ++.+|+..+|++ ++..... ..+..+++.
T Consensus 161 VG~e~~~~kl~~~L~~d--~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~----VSk~f~~-~~iq~~Il~ 233 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMED--DVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVV----VSKEFTT-RKIQQTILE 233 (889)
T ss_pred ccHHHHHHHHHHHhccC--CCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEE----EcccccH-HhHHHHHHH
Confidence 99999999999999954 3389999999999999999999986 568899999998 4444444 788888888
Q ss_pred HHhcccCCC-ccchhhhHHHHHhhhCCceEEEEEeCCCChhhhhhhhCCCCCCCCCceEEEEeCchhHhhh-cCcccEEe
Q 045677 89 DLLMLADNS-IRNVYDGVNMIGSRLRHKKVLLLIDDVADVEQLRGLFGKRDWFGLGSMIIITTRDEHLLKL-HRVEEVYK 166 (352)
Q Consensus 89 ~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~llvlDd~~~~~~~~~l~~~~~~~~~~~~iiitsr~~~~~~~-~~~~~~~~ 166 (352)
.+....... ..........+.+.+.+++++||+||+|+..+|+.+...++....|++|++|||+..++.. +.....++
T Consensus 234 ~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~ 313 (889)
T KOG4658|consen 234 RLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIE 313 (889)
T ss_pred HhccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCcccc
Confidence 776633332 3334788888999999999999999999999999999988877788999999999999888 66778999
Q ss_pred cCCCCHhHHHHHHHhhhcCCCC-CchhHHHHHHHHHHHcCCCchhHHHHHHhhcCCC-hhHHHHHHHHHccC-------C
Q 045677 167 LEALNFDEAFRLFCLKAFDTYK-PLEEYLELAKCFVKYASGLPLAVDVLVSFLFGRP-VDQWRSTQERLKRD-------P 237 (352)
Q Consensus 167 l~~l~~~e~~~ll~~~~~~~~~-~~~~~~~~~~~i~~~~~G~Pl~i~~~~~~l~~~~-~~~~~~~~~~~~~~-------~ 237 (352)
+..|+.+|||.+|.+.++.... ..+..++.+++++++|+|+|+|+..+|..++.+. ..+|..+.+.+.+. .
T Consensus 314 v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~ 393 (889)
T KOG4658|consen 314 VECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGM 393 (889)
T ss_pred ccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCch
Confidence 9999999999999999876532 2244789999999999999999999999998864 55899999987654 2
Q ss_pred chhHHHHHHhhhccCcHhhhhhhhhhccCCCC--CCHHHHHHHHHhcCCC------------chhchHHHhhccceeecC
Q 045677 238 ENKILGILQISFDGLKEAEKNIFLDVACFYKW--ENRDYVSKILDSCGFD------------PIIGISVLIEKSLLTVRE 303 (352)
Q Consensus 238 ~~~~~~~l~~~~~~L~~~~~~~l~~ls~~~~~--~~~~~l~~~~~~~~~~------------~~~~l~~L~~~~li~~~~ 303 (352)
...+..++..+|+.|+++.+.||+|||+||++ +..+.+..+|.++|+. ...++.+|++++|+....
T Consensus 394 ~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~ 473 (889)
T KOG4658|consen 394 EESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEER 473 (889)
T ss_pred hhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcc
Confidence 46788999999999999999999999999987 5899999999999843 355699999999999875
Q ss_pred C----CceehhHHHHHHHHHHHhhc
Q 045677 304 N----DRLWMHDLLQEMGQQIVRRQ 324 (352)
Q Consensus 304 ~----~~~~~H~lir~~~~~~~~~~ 324 (352)
+ ..+.|||++|++|...+++.
T Consensus 474 ~~~~~~~~kmHDvvRe~al~ias~~ 498 (889)
T KOG4658|consen 474 DEGRKETVKMHDVVREMALWIASDF 498 (889)
T ss_pred cccceeEEEeeHHHHHHHHHHhccc
Confidence 3 45899999999999999933
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=4.1e-37 Score=268.77 Aligned_cols=268 Identities=31% Similarity=0.450 Sum_probs=206.9
Q ss_pred ccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHH--hcCCCcceeEeeeccccccCCCcHHHHHHHHHHHHh
Q 045677 14 MESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDL--MSHEFDGSSFLADVRERCDKEGSVISLQKQLLSDLL 91 (352)
Q Consensus 14 R~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 91 (352)
|+.++++|.++|....++.++|+|+|++|+|||+||.+++++ .+.+|+..+|+.. ...... ..+...++..+.
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~----~~~~~~-~~~~~~i~~~l~ 75 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSL----SKNPSL-EQLLEQILRQLG 75 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEE----ES-SCC-HHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccccccccccccccccc----cccccc-cccccccccccc
Confidence 789999999999975578899999999999999999999988 8888987777762 333333 677788888876
Q ss_pred cccCC--CccchhhhHHHHHhhhCCceEEEEEeCCCChhhhhhhhCCCCCCCCCceEEEEeCchhHhhhcCc-ccEEecC
Q 045677 92 MLADN--SIRNVYDGVNMIGSRLRHKKVLLLIDDVADVEQLRGLFGKRDWFGLGSMIIITTRDEHLLKLHRV-EEVYKLE 168 (352)
Q Consensus 92 ~~~~~--~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~~~~~~l~~~~~~~~~~~~iiitsr~~~~~~~~~~-~~~~~l~ 168 (352)
..... ...+.......+.+.+.++++||||||+|+...|+.+...+.....+++||+|||+..+...... ...++++
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~ 155 (287)
T PF00931_consen 76 EPDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELE 155 (287)
T ss_dssp CC-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECS
T ss_pred ccccccccccccccccccchhhhccccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccc
Confidence 65432 45677778899999999999999999999999988887666555678999999999877665443 6789999
Q ss_pred CCCHhHHHHHHHhhhcCCC-CCchhHHHHHHHHHHHcCCCchhHHHHHHhhcCC-ChhHHHHHHHHHccC------Cchh
Q 045677 169 ALNFDEAFRLFCLKAFDTY-KPLEEYLELAKCFVKYASGLPLAVDVLVSFLFGR-PVDQWRSTQERLKRD------PENK 240 (352)
Q Consensus 169 ~l~~~e~~~ll~~~~~~~~-~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~~l~~~-~~~~~~~~~~~~~~~------~~~~ 240 (352)
+|+.+|+.++|.+.++... ...+..++.+++|++.|+|+|++|+.+|++++.+ ...+|....+.+... ....
T Consensus 156 ~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~ 235 (287)
T PF00931_consen 156 PLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRS 235 (287)
T ss_dssp S--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999875544 1223345678999999999999999999999543 567888888776543 2478
Q ss_pred HHHHHHhhhccCcHhhhhhhhhhccCCCC--CCHHHHHHHHHhcCCCc
Q 045677 241 ILGILQISFDGLKEAEKNIFLDVACFYKW--ENRDYVSKILDSCGFDP 286 (352)
Q Consensus 241 ~~~~l~~~~~~L~~~~~~~l~~ls~~~~~--~~~~~l~~~~~~~~~~~ 286 (352)
+...+..+|+.|+++.|.||.+|++||.+ ++.+.+..+|.++++..
T Consensus 236 ~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~ 283 (287)
T PF00931_consen 236 VFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFIS 283 (287)
T ss_dssp HHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC
T ss_pred ccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCc
Confidence 99999999999999999999999999987 56999999998876544
No 4
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.89 E-value=4.5e-21 Score=193.02 Aligned_cols=302 Identities=14% Similarity=0.139 Sum_probs=196.2
Q ss_pred CCCCCCcCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHH
Q 045677 3 SELEIPKELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISL 82 (352)
Q Consensus 3 ~~~~~~~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 82 (352)
.||..+..+|-|+.-++.|.+ ....++++|+||+|.||||++.++.... ....|+. +... ...+..+
T Consensus 8 ~~p~~~~~~~~R~rl~~~l~~-----~~~~~~~~v~apaG~GKTtl~~~~~~~~----~~~~w~~-l~~~---d~~~~~f 74 (903)
T PRK04841 8 SRPVRLHNTVVRERLLAKLSG-----ANNYRLVLVTSPAGYGKTTLISQWAAGK----NNLGWYS-LDES---DNQPERF 74 (903)
T ss_pred CCCCCccccCcchHHHHHHhc-----ccCCCeEEEECCCCCCHHHHHHHHHHhC----CCeEEEe-cCcc---cCCHHHH
Confidence 478888899999987777754 2356899999999999999999988643 2467774 3222 2222344
Q ss_pred HHHHHHHHhcccCC------------CccchhhhHHHHHhhhC--CceEEEEEeCCCCh--hhhhhhhCC-CCCCCCCce
Q 045677 83 QKQLLSDLLMLADN------------SIRNVYDGVNMIGSRLR--HKKVLLLIDDVADV--EQLRGLFGK-RDWFGLGSM 145 (352)
Q Consensus 83 ~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~l~--~~~~llvlDd~~~~--~~~~~l~~~-~~~~~~~~~ 145 (352)
...++..+...... ...........+...+. +.+++|||||++.. ..+..++.. +...+.+.+
T Consensus 75 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~ 154 (903)
T PRK04841 75 ASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLT 154 (903)
T ss_pred HHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeE
Confidence 44555444211111 00122223333333332 68999999999643 222222222 222356788
Q ss_pred EEEEeCchhHhhhcC---cccEEecC----CCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchhHHHHHHhh
Q 045677 146 IIITTRDEHLLKLHR---VEEVYKLE----ALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLAVDVLVSFL 218 (352)
Q Consensus 146 iiitsr~~~~~~~~~---~~~~~~l~----~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~~l 218 (352)
+|||||......... .....+|. +|+.+|+.+++...... .. ..+.+..+++.|+|+|+++.+++..+
T Consensus 155 lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~-~~----~~~~~~~l~~~t~Gwp~~l~l~~~~~ 229 (903)
T PRK04841 155 LVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSS-PI----EAAESSRLCDDVEGWATALQLIALSA 229 (903)
T ss_pred EEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCC-CC----CHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 999999753221111 12244555 99999999999776522 11 23668899999999999999988776
Q ss_pred cCCChhHHHHHHHHHccCCchhHHHHHH-hhhccCcHhhhhhhhhhccCCCCCCHHHHHHHHHhcCCCchhchHHHhhcc
Q 045677 219 FGRPVDQWRSTQERLKRDPENKILGILQ-ISFDGLKEAEKNIFLDVACFYKWENRDYVSKILDSCGFDPIIGISVLIEKS 297 (352)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~L~~~~~~~l~~ls~~~~~~~~~~l~~~~~~~~~~~~~~l~~L~~~~ 297 (352)
.... .........+.......+...+. ..+..||+..+.++..+|+++ .++.+.+..+++ ..+....+..|.+.|
T Consensus 230 ~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~-~~~~~l~~~l~~--~~~~~~~L~~l~~~~ 305 (903)
T PRK04841 230 RQNN-SSLHDSARRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR-SMNDALIVRVTG--EENGQMRLEELERQG 305 (903)
T ss_pred hhCC-CchhhhhHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc-cCCHHHHHHHcC--CCcHHHHHHHHHHCC
Confidence 5432 11111122222222345666654 448999999999999999986 788887777774 335578899999999
Q ss_pred ceeec-C--CCceehhHHHHHHHHHHHhhcCC
Q 045677 298 LLTVR-E--NDRLWMHDLLQEMGQQIVRRQSP 326 (352)
Q Consensus 298 li~~~-~--~~~~~~H~lir~~~~~~~~~~~~ 326 (352)
++... + ..+|++||++|+|++..+....+
T Consensus 306 l~~~~~~~~~~~yr~H~L~r~~l~~~l~~~~~ 337 (903)
T PRK04841 306 LFIQRMDDSGEWFRYHPLFASFLRHRCQWELA 337 (903)
T ss_pred CeeEeecCCCCEEehhHHHHHHHHHHHHhcCc
Confidence 97643 2 23799999999999999866543
No 5
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.86 E-value=1.3e-19 Score=168.56 Aligned_cols=300 Identities=17% Similarity=0.191 Sum_probs=204.6
Q ss_pred CCCCCcCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHH
Q 045677 4 ELEIPKELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQ 83 (352)
Q Consensus 4 ~~~~~~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 83 (352)
||..+.++|-|..-++.|.. ..++|.++|..|+|.|||||+.+++. .......+.|+. .....+....++
T Consensus 14 ~P~~~~~~v~R~rL~~~L~~-----~~~~RL~li~APAGfGKttl~aq~~~-~~~~~~~v~Wls----lde~dndp~rF~ 83 (894)
T COG2909 14 RPVRPDNYVVRPRLLDRLRR-----ANDYRLILISAPAGFGKTTLLAQWRE-LAADGAAVAWLS----LDESDNDPARFL 83 (894)
T ss_pred CCCCcccccccHHHHHHHhc-----CCCceEEEEeCCCCCcHHHHHHHHHH-hcCcccceeEee----cCCccCCHHHHH
Confidence 56667888888877777765 45679999999999999999999998 455556788887 333333346677
Q ss_pred HHHHHHHhcccCCC------------ccchhhhHHHHHhhhC--CceEEEEEeCCCCh------hhhhhhhCCCCCCCCC
Q 045677 84 KQLLSDLLMLADNS------------IRNVYDGVNMIGSRLR--HKKVLLLIDDVADV------EQLRGLFGKRDWFGLG 143 (352)
Q Consensus 84 ~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~l~--~~~~llvlDd~~~~------~~~~~l~~~~~~~~~~ 143 (352)
..++..+..-.+.. ..+.....+.+...+. .+++.+||||++-+ ..++.++.. .+.+
T Consensus 84 ~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~---~P~~ 160 (894)
T COG2909 84 SYLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKH---APEN 160 (894)
T ss_pred HHHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHh---CCCC
Confidence 77776655322222 1234444555555443 57999999999522 224444433 4678
Q ss_pred ceEEEEeCchhHhhhcCc---ccEEe----cCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchhHHHHHH
Q 045677 144 SMIIITTRDEHLLKLHRV---EEVYK----LEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLAVDVLVS 216 (352)
Q Consensus 144 ~~iiitsr~~~~~~~~~~---~~~~~----l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~ 216 (352)
..+|+|||..+.....+. ...++ .=.|+.+|+.++|..... .. ..+..++.+++.++|++-++.+++-
T Consensus 161 l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~-l~----Ld~~~~~~L~~~teGW~~al~L~aL 235 (894)
T COG2909 161 LTLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGS-LP----LDAADLKALYDRTEGWAAALQLIAL 235 (894)
T ss_pred eEEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCC-CC----CChHHHHHHHhhcccHHHHHHHHHH
Confidence 899999997654333211 11122 235899999999987652 11 2346688999999999999999988
Q ss_pred hhcCCChhHHHHHHHHHccCCchhHHH-HHHhhhccCcHhhhhhhhhhccCCCCCCHHHHHHHHHhcCCCchhchHHHhh
Q 045677 217 FLFGRPVDQWRSTQERLKRDPENKILG-ILQISFDGLKEAEKNIFLDVACFYKWENRDYVSKILDSCGFDPIIGISVLIE 295 (352)
Q Consensus 217 ~l~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~L~~~~~~~l~~ls~~~~~~~~~~l~~~~~~~~~~~~~~l~~L~~ 295 (352)
.++.+... ......+... ...+.+ +.+..++.||++.+.++..+|+++ .|.-+...++++ ..+...-+++|.+
T Consensus 236 a~~~~~~~--~q~~~~LsG~-~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~-~f~~eL~~~Ltg--~~ng~amLe~L~~ 309 (894)
T COG2909 236 ALRNNTSA--EQSLRGLSGA-ASHLSDYLVEEVLDRLPPELRDFLLQTSVLS-RFNDELCNALTG--EENGQAMLEELER 309 (894)
T ss_pred HccCCCcH--HHHhhhccch-HHHHHHHHHHHHHhcCCHHHHHHHHHHHhHH-HhhHHHHHHHhc--CCcHHHHHHHHHh
Confidence 88843221 1122222222 234444 567889999999999999999983 355566656652 3345667999999
Q ss_pred ccceeec---CCCceehhHHHHHHHHHHHhhcCCC
Q 045677 296 KSLLTVR---ENDRLWMHDLLQEMGQQIVRRQSPD 327 (352)
Q Consensus 296 ~~li~~~---~~~~~~~H~lir~~~~~~~~~~~~~ 327 (352)
+||+-.. ++++|++|++|.+|.+.++....+.
T Consensus 310 ~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~~~~~ 344 (894)
T COG2909 310 RGLFLQRLDDEGQWFRYHHLFAEFLRQRLQRELAA 344 (894)
T ss_pred CCCceeeecCCCceeehhHHHHHHHHhhhccccCC
Confidence 9999733 3667999999999999999986544
No 6
>COG3899 Predicted ATPase [General function prediction only]
Probab=99.79 E-value=6.7e-18 Score=164.90 Aligned_cols=328 Identities=16% Similarity=0.195 Sum_probs=200.1
Q ss_pred CcccccHHHHHHHHHHhc-CCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEe-eeccccccCCCcHHHHHHHHH
Q 045677 10 ELVGMESRLEKLKFLMCT-GSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFL-ADVRERCDKEGSVISLQKQLL 87 (352)
Q Consensus 10 ~~vGR~~~l~~l~~~l~~-~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~ 87 (352)
.++||+.|++.|...+.. ..+...++.|.|.+|||||++++++...+.+.....+.. ++--....+...+.+.++++.
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~ 80 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLM 80 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHH
Confidence 479999999999998886 445678999999999999999999999876652211111 110111112222333444444
Q ss_pred HHHhcccCCCc-------------------cch---------------------h-----hhHHHHHhhhC-CceEEEEE
Q 045677 88 SDLLMLADNSI-------------------RNV---------------------Y-----DGVNMIGSRLR-HKKVLLLI 121 (352)
Q Consensus 88 ~~~~~~~~~~~-------------------~~~---------------------~-----~~~~~~~~~l~-~~~~llvl 121 (352)
.++........ +.+ + .....+..... .+|+++|+
T Consensus 81 ~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~l 160 (849)
T COG3899 81 GQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVL 160 (849)
T ss_pred HHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEE
Confidence 33311111100 000 0 11122222233 45999999
Q ss_pred eCC-CCh-hhh---hhhhCCCC--CC-CCCceEEEEeCch--hHhhhcCcccEEecCCCCHhHHHHHHHhhhcCCCCCch
Q 045677 122 DDV-ADV-EQL---RGLFGKRD--WF-GLGSMIIITTRDE--HLLKLHRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLE 191 (352)
Q Consensus 122 Dd~-~~~-~~~---~~l~~~~~--~~-~~~~~iiitsr~~--~~~~~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~ 191 (352)
||+ |.. .++ +.++.... .. ......+.+.+.. .+.........+.|.||+..+...++..........
T Consensus 161 eDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~~-- 238 (849)
T COG3899 161 EDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKLL-- 238 (849)
T ss_pred ecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcccc--
Confidence 999 533 333 33333221 00 0122222233322 122223445789999999999999999887542222
Q ss_pred hHHHHHHHHHHHcCCCchhHHHHHHhhcCC-------ChhHHHHHHHHHccC-CchhHHHHHHhhhccCcHhhhhhhhhh
Q 045677 192 EYLELAKCFVKYASGLPLAVDVLVSFLFGR-------PVDQWRSTQERLKRD-PENKILGILQISFDGLKEAEKNIFLDV 263 (352)
Q Consensus 192 ~~~~~~~~i~~~~~G~Pl~i~~~~~~l~~~-------~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~L~~~~~~~l~~l 263 (352)
..+..+.+++++.|||+++..+.+.+.++ ....|......+... ..+++...+...++.||...++++...
T Consensus 239 -~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l~~rl~kL~~~t~~Vl~~A 317 (849)
T COG3899 239 -PAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFLAARLQKLPGTTREVLKAA 317 (849)
T ss_pred -cchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 23678899999999999999999998774 234455444443321 123455678999999999999999999
Q ss_pred ccCCCCCCHHHHHHHHHhcCCC-chhchHHHhhccceeec-----C---CCc-e-ehhHHHHHHHHHHHhhcCCCCCCCc
Q 045677 264 ACFYKWENRDYVSKILDSCGFD-PIIGISVLIEKSLLTVR-----E---NDR-L-WMHDLLQEMGQQIVRRQSPDEPGRR 332 (352)
Q Consensus 264 s~~~~~~~~~~l~~~~~~~~~~-~~~~l~~L~~~~li~~~-----~---~~~-~-~~H~lir~~~~~~~~~~~~~~~~~~ 332 (352)
+|+.+.|+.+.+..++...... ....+..|....++... . .-. | ..|+++++++++.+.+. .|
T Consensus 318 A~iG~~F~l~~La~l~~~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY~~i~~~------~r 391 (849)
T COG3899 318 ACIGNRFDLDTLAALAEDSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQAAYNLIPES------QR 391 (849)
T ss_pred HHhCccCCHHHHHHHHhhchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHHHHhccCchh------hH
Confidence 9999999999999998643222 33344555555555321 1 111 2 46999999998877764 22
Q ss_pred ccccccchhhHhhccC
Q 045677 333 SRLWEEADVSHVLSQN 348 (352)
Q Consensus 333 ~~~~~~~~~~~~l~~~ 348 (352)
. ..|-.+...|.+.
T Consensus 392 q--~~H~~i~~lL~~~ 405 (849)
T COG3899 392 Q--YLHLRIGQLLEQN 405 (849)
T ss_pred H--HHHHHHHHHHHHh
Confidence 2 4477777777543
No 7
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.72 E-value=2.3e-15 Score=137.45 Aligned_cols=288 Identities=16% Similarity=0.144 Sum_probs=168.2
Q ss_pred CCCCCcCcccccHHHHHHHHHHhcC--CCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCC-cceeEeeeccccccCCCcHH
Q 045677 4 ELEIPKELVGMESRLEKLKFLMCTG--SNDVRTIGIWGMGGLGKTTLARVVYDLMSHEF-DGSSFLADVRERCDKEGSVI 80 (352)
Q Consensus 4 ~~~~~~~~vGR~~~l~~l~~~l~~~--~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 80 (352)
|...|+.|+||+.|+++|...+... +...+.++|+|++|+|||++++.+++.+.... ...+.+.++.... ...
T Consensus 25 ~~~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~----~~~ 100 (394)
T PRK00411 25 PDYVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDR----TRY 100 (394)
T ss_pred CCCcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCC----CHH
Confidence 4557889999999999999998642 33456689999999999999999999876543 2222222222222 225
Q ss_pred HHHHHHHHHHhcccC-CCccchhhhHHHHHhhhC--CceEEEEEeCCCChh------hhhhhhCCCCCC-CCCceEEEEe
Q 045677 81 SLQKQLLSDLLMLAD-NSIRNVYDGVNMIGSRLR--HKKVLLLIDDVADVE------QLRGLFGKRDWF-GLGSMIIITT 150 (352)
Q Consensus 81 ~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~--~~~~llvlDd~~~~~------~~~~l~~~~~~~-~~~~~iiits 150 (352)
.++..++..+..... ....+.......+.+.+. +++++||||+++... .+..+....... ..+..+|.++
T Consensus 101 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~ 180 (394)
T PRK00411 101 AIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGIS 180 (394)
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEE
Confidence 666677776654221 122234555666666654 467999999996542 344444332211 1234456665
Q ss_pred CchhHhhhc-------CcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHc----CCCchhHHHHHHhh-
Q 045677 151 RDEHLLKLH-------RVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYA----SGLPLAVDVLVSFL- 218 (352)
Q Consensus 151 r~~~~~~~~-------~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~----~G~Pl~i~~~~~~l- 218 (352)
.+....... -....+.+++++.++..+++..++..........++.++.+++.+ |..+.++..+-..+
T Consensus 181 ~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~ 260 (394)
T PRK00411 181 SDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGL 260 (394)
T ss_pred CCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 543322211 112467899999999999998876322111112335555565555 33555555543321
Q ss_pred --c-CC----ChhHHHHHHHHHccCCchhHHHHHHhhhccCcHhhhhhhhhhccCC----CCCCHHHHHH----HHHhcC
Q 045677 219 --F-GR----PVDQWRSTQERLKRDPENKILGILQISFDGLKEAEKNIFLDVACFY----KWENRDYVSK----ILDSCG 283 (352)
Q Consensus 219 --~-~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~l~~ls~~~----~~~~~~~l~~----~~~~~~ 283 (352)
. .. ....+....+.. ....+...+..||..++.++..++... ..++...+.. ++...+
T Consensus 261 ~a~~~~~~~I~~~~v~~a~~~~-------~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~ 333 (394)
T PRK00411 261 IAEREGSRKVTEEDVRKAYEKS-------EIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELG 333 (394)
T ss_pred HHHHcCCCCcCHHHHHHHHHHH-------HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcC
Confidence 1 11 123333333332 123456678999999999988876442 3344444432 221122
Q ss_pred C------CchhchHHHhhccceeec
Q 045677 284 F------DPIIGISVLIEKSLLTVR 302 (352)
Q Consensus 284 ~------~~~~~l~~L~~~~li~~~ 302 (352)
. ....+++.|...|||...
T Consensus 334 ~~~~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 334 YEPRTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred CCcCcHHHHHHHHHHHHhcCCeEEE
Confidence 2 234578999999999854
No 8
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.67 E-value=1.8e-16 Score=134.10 Aligned_cols=198 Identities=21% Similarity=0.225 Sum_probs=103.0
Q ss_pred cccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHH------HH
Q 045677 11 LVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISL------QK 84 (352)
Q Consensus 11 ~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l------~~ 84 (352)
|+||+.|+++|.+++.+ +..+.++|+|+.|+|||+|+..+...........+|+......... ..... ..
T Consensus 1 F~gR~~el~~l~~~l~~--~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~--~~~~~~~~~~~~~ 76 (234)
T PF01637_consen 1 FFGREKELEKLKELLES--GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNES--SLRSFIEETSLAD 76 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHH--HHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHh--hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhh--HHHHHHHHHHHHH
Confidence 89999999999999984 3457899999999999999999999885543334444322111110 00111 11
Q ss_pred HHHHHHhcccC---------CCccchhhhHHHHHhhhC--CceEEEEEeCCCChh-------h----hhhhhCCCCCCCC
Q 045677 85 QLLSDLLMLAD---------NSIRNVYDGVNMIGSRLR--HKKVLLLIDDVADVE-------Q----LRGLFGKRDWFGL 142 (352)
Q Consensus 85 ~~~~~~~~~~~---------~~~~~~~~~~~~~~~~l~--~~~~llvlDd~~~~~-------~----~~~l~~~~~~~~~ 142 (352)
.+...+..... ............+.+.+. +.+++|||||++... . +..+..... ...
T Consensus 77 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~ 155 (234)
T PF01637_consen 77 ELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLL-SQQ 155 (234)
T ss_dssp HCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-----T
T ss_pred HHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhcc-ccC
Confidence 11111111111 011222233333333332 345999999995444 1 222222211 134
Q ss_pred CceEEEEeCchhHhhh--------cCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchhHHHH
Q 045677 143 GSMIIITTRDEHLLKL--------HRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLAVDVL 214 (352)
Q Consensus 143 ~~~iiitsr~~~~~~~--------~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~ 214 (352)
+..+|+++....+... ......+.|++|+.+++.+++.......... +...+..+.++..+||+|..|..+
T Consensus 156 ~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~gG~P~~l~~~ 234 (234)
T PF01637_consen 156 NVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELIKL-PFSDEDIEEIYSLTGGNPRYLQEL 234 (234)
T ss_dssp TEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHHHH
T ss_pred CceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhhcc-cCCHHHHHHHHHHhCCCHHHHhcC
Confidence 4555565554433322 2233459999999999999998865333111 235677899999999999998753
No 9
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.65 E-value=2.7e-13 Score=122.52 Aligned_cols=290 Identities=14% Similarity=0.102 Sum_probs=163.3
Q ss_pred CCCCCCcCcccccHHHHHHHHHHhc--CCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCc-----ceeEeeeccccccC
Q 045677 3 SELEIPKELVGMESRLEKLKFLMCT--GSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFD-----GSSFLADVRERCDK 75 (352)
Q Consensus 3 ~~~~~~~~~vGR~~~l~~l~~~l~~--~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 75 (352)
++...|+.|+||+.|+++|..++.. .+...+.++|+|++|+|||++++.+++.+..... ..+.+.++....
T Consensus 9 ~~~~~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~-- 86 (365)
T TIGR02928 9 EPDYVPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILD-- 86 (365)
T ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCC--
Confidence 3556788999999999999999875 2234567899999999999999999987643221 222233322221
Q ss_pred CCcHHHHHHHHHHHHhc--cc-CCCccchhhhHHHHHhhh--CCceEEEEEeCCCChh-----hhhhhhCCC--CCC-CC
Q 045677 76 EGSVISLQKQLLSDLLM--LA-DNSIRNVYDGVNMIGSRL--RHKKVLLLIDDVADVE-----QLRGLFGKR--DWF-GL 142 (352)
Q Consensus 76 ~~~~~~l~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~l--~~~~~llvlDd~~~~~-----~~~~l~~~~--~~~-~~ 142 (352)
....++..++..+.. .. +....+..+....+.+.+ .+++++||||+++... .+..+.... ... ..
T Consensus 87 --~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~ 164 (365)
T TIGR02928 87 --TLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNA 164 (365)
T ss_pred --CHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCC
Confidence 225666677766632 11 111122334444455544 3568899999997551 133333321 111 13
Q ss_pred CceEEEEeCchhHhhhc------Cc-ccEEecCCCCHhHHHHHHHhhhcCC---CCCchhHHHHHHHHHHHcCCCchhHH
Q 045677 143 GSMIIITTRDEHLLKLH------RV-EEVYKLEALNFDEAFRLFCLKAFDT---YKPLEEYLELAKCFVKYASGLPLAVD 212 (352)
Q Consensus 143 ~~~iiitsr~~~~~~~~------~~-~~~~~l~~l~~~e~~~ll~~~~~~~---~~~~~~~~~~~~~i~~~~~G~Pl~i~ 212 (352)
+..+|.++......... +. ...+.+++++.++..+++..+.... ....+..-+.+..++..+.|.|..+.
T Consensus 165 ~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al 244 (365)
T TIGR02928 165 KVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAI 244 (365)
T ss_pred eEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHH
Confidence 34455555433221111 11 2468899999999999998876311 11222222345566777789986654
Q ss_pred HHHHhhc-----C-C---ChhHHHHHHHHHccCCchhHHHHHHhhhccCcHhhhhhhhhhccCC----CCCCHHHHHH--
Q 045677 213 VLVSFLF-----G-R---PVDQWRSTQERLKRDPENKILGILQISFDGLKEAEKNIFLDVACFY----KWENRDYVSK-- 277 (352)
Q Consensus 213 ~~~~~l~-----~-~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~l~~ls~~~----~~~~~~~l~~-- 277 (352)
.++.... + . ..+.+....+.. -...+...+..||.+++.++..+..+- ..+....+..
T Consensus 245 ~~l~~a~~~a~~~~~~~it~~~v~~a~~~~-------~~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y 317 (365)
T TIGR02928 245 DLLRVAGEIAEREGAERVTEDHVEKAQEKI-------EKDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVY 317 (365)
T ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHH-------HHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHH
Confidence 4333221 1 1 122223222222 123455678899999988887765321 2244333332
Q ss_pred --HHHhcCC------CchhchHHHhhccceeecC
Q 045677 278 --ILDSCGF------DPIIGISVLIEKSLLTVRE 303 (352)
Q Consensus 278 --~~~~~~~------~~~~~l~~L~~~~li~~~~ 303 (352)
+....+. .....+..|...|||+...
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~l~~l~~~gli~~~~ 351 (365)
T TIGR02928 318 KEVCEDIGVDPLTQRRISDLLNELDMLGLVEAEE 351 (365)
T ss_pred HHHHHhcCCCCCcHHHHHHHHHHHHhcCCeEEEE
Confidence 2211121 1245688999999998753
No 10
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.63 E-value=2.3e-14 Score=126.15 Aligned_cols=256 Identities=19% Similarity=0.180 Sum_probs=154.0
Q ss_pred cCcccccHHHHHHHHHHhc---CCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHHH
Q 045677 9 KELVGMESRLEKLKFLMCT---GSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQKQ 85 (352)
Q Consensus 9 ~~~vGR~~~l~~l~~~l~~---~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 85 (352)
..|||++..++.|..++.. ..+..+.++|+||+|+|||+||..+++.+...+ ........... ..+ ..
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~----~~~~~~~~~~~----~~l-~~ 74 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNL----KITSGPALEKP----GDL-AA 74 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCE----EEeccchhcCc----hhH-HH
Confidence 4699999999999998874 123345688999999999999999998876432 11111000000 111 11
Q ss_pred HHHHHhcccCCCccchhhhHHHHHhhhCCceEEEEEeCCCChh--hhhhhhCCCC-------------------CCCCCc
Q 045677 86 LLSDLLMLADNSIRNVYDGVNMIGSRLRHKKVLLLIDDVADVE--QLRGLFGKRD-------------------WFGLGS 144 (352)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~~--~~~~l~~~~~-------------------~~~~~~ 144 (352)
.+..+ +...+++||+++... ..+.++..+. ...+.+
T Consensus 75 ~l~~~-----------------------~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 131 (305)
T TIGR00635 75 ILTNL-----------------------EEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFT 131 (305)
T ss_pred HHHhc-----------------------ccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeE
Confidence 11111 123466667664221 1111111110 001233
Q ss_pred eEEEEeCchhHhhh--cCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchhHHHHHHhhcC--
Q 045677 145 MIIITTRDEHLLKL--HRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLAVDVLVSFLFG-- 220 (352)
Q Consensus 145 ~iiitsr~~~~~~~--~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~~l~~-- 220 (352)
.|..|++...+... .+....+.+.+++.++..+++.+.+..... ...++.++.|++.|+|.|..+..++..+..
T Consensus 132 li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~--~~~~~al~~ia~~~~G~pR~~~~ll~~~~~~a 209 (305)
T TIGR00635 132 LVGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNV--EIEPEAALEIARRSRGTPRIANRLLRRVRDFA 209 (305)
T ss_pred EEEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCC--CcCHHHHHHHHHHhCCCcchHHHHHHHHHHHH
Confidence 34445665433222 123456899999999999999887643222 234577889999999999887766654321
Q ss_pred ----CChhHHHHHHHHHccCCchhHHHHHHhhhccCcHhhhhhhhhh-ccCCC-CCCHHHHHHHHHhcCCCchhchH-HH
Q 045677 221 ----RPVDQWRSTQERLKRDPENKILGILQISFDGLKEAEKNIFLDV-ACFYK-WENRDYVSKILDSCGFDPIIGIS-VL 293 (352)
Q Consensus 221 ----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~l~~l-s~~~~-~~~~~~l~~~~~~~~~~~~~~l~-~L 293 (352)
...-..... ......+...+..++..++..|..+ ..+.+ +++.+.++..++.+....+..++ .|
T Consensus 210 ~~~~~~~it~~~v---------~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~~~~~~~ia~~lg~~~~~~~~~~e~~L 280 (305)
T TIGR00635 210 QVRGQKIINRDIA---------LKALEMLMIDELGLDEIDRKLLSVLIEQFQGGPVGLKTLAAALGEDADTIEDVYEPYL 280 (305)
T ss_pred HHcCCCCcCHHHH---------HHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCCcccHHHHHHHhCCCcchHHHhhhHHH
Confidence 000000000 1111124556788888888877744 54543 47899999999988888888899 69
Q ss_pred hhccceeecCCCce
Q 045677 294 IEKSLLTVRENDRL 307 (352)
Q Consensus 294 ~~~~li~~~~~~~~ 307 (352)
+++|||...+.|++
T Consensus 281 i~~~li~~~~~g~~ 294 (305)
T TIGR00635 281 LQIGFLQRTPRGRI 294 (305)
T ss_pred HHcCCcccCCchhh
Confidence 99999987766643
No 11
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.59 E-value=5.5e-14 Score=124.60 Aligned_cols=263 Identities=19% Similarity=0.174 Sum_probs=159.2
Q ss_pred CCCCcCcccccHHHHHHHHHHhc---CCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHH
Q 045677 5 LEIPKELVGMESRLEKLKFLMCT---GSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVIS 81 (352)
Q Consensus 5 ~~~~~~~vGR~~~l~~l~~~l~~---~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (352)
|..-..|+||+..++.+..++.. .....+.++|+|++|+|||+||..+++.+...+. ....... . . ..
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~----~~~~~~~-~---~-~~ 91 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIR----ITSGPAL-E---K-PG 91 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeE----EEecccc-c---C-hH
Confidence 34456799999999999887764 2334567899999999999999999998764321 1111000 0 0 11
Q ss_pred HHHHHHHHHhcccCCCccchhhhHHHHHhhhCCceEEEEEeCCCChh--hhhhhhCCCC-------------------CC
Q 045677 82 LQKQLLSDLLMLADNSIRNVYDGVNMIGSRLRHKKVLLLIDDVADVE--QLRGLFGKRD-------------------WF 140 (352)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~~--~~~~l~~~~~-------------------~~ 140 (352)
.+..++..+ +...+|+||+++... ..+.+...+. ..
T Consensus 92 ~l~~~l~~l-----------------------~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l 148 (328)
T PRK00080 92 DLAAILTNL-----------------------EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDL 148 (328)
T ss_pred HHHHHHHhc-----------------------ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecC
Confidence 111111111 223477777774321 1111111000 00
Q ss_pred CCCceEEEEeCchhHhhhc--CcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchhHHHHHHhh
Q 045677 141 GLGSMIIITTRDEHLLKLH--RVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLAVDVLVSFL 218 (352)
Q Consensus 141 ~~~~~iiitsr~~~~~~~~--~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~~l 218 (352)
.+.+.|..|++...+.... +....+.+++++.++..+++......... ...++.+..|++.|+|.|..+..+...+
T Consensus 149 ~~~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~--~~~~~~~~~ia~~~~G~pR~a~~~l~~~ 226 (328)
T PRK00080 149 PPFTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGV--EIDEEGALEIARRSRGTPRIANRLLRRV 226 (328)
T ss_pred CCceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCC--CcCHHHHHHHHHHcCCCchHHHHHHHHH
Confidence 1223344455544332221 23457899999999999999987643322 2345779999999999998777666543
Q ss_pred cCCChhHHHHHHH--HHccCCchhHHHHHHhhhccCcHhhhhhhh-hhccCCC-CCCHHHHHHHHHhcCCCchhchH-HH
Q 045677 219 FGRPVDQWRSTQE--RLKRDPENKILGILQISFDGLKEAEKNIFL-DVACFYK-WENRDYVSKILDSCGFDPIIGIS-VL 293 (352)
Q Consensus 219 ~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~L~~~~~~~l~-~ls~~~~-~~~~~~l~~~~~~~~~~~~~~l~-~L 293 (352)
.. |..... ......-......+...+..|++..+..+. .+..|.+ ++..+.++..++.+....+..++ .|
T Consensus 227 ~~-----~a~~~~~~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~a~~lg~~~~~~~~~~e~~L 301 (328)
T PRK00080 227 RD-----FAQVKGDGVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGGPVGLDTLAAALGEERDTIEDVYEPYL 301 (328)
T ss_pred HH-----HHHHcCCCCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCCceeHHHHHHHHCCCcchHHHHhhHHH
Confidence 21 110000 000000012223345667788888888886 5555654 58999999999888888888898 99
Q ss_pred hhccceeecCCCc
Q 045677 294 IEKSLLTVRENDR 306 (352)
Q Consensus 294 ~~~~li~~~~~~~ 306 (352)
++.|||+....|+
T Consensus 302 i~~~li~~~~~gr 314 (328)
T PRK00080 302 IQQGFIQRTPRGR 314 (328)
T ss_pred HHcCCcccCCchH
Confidence 9999998776664
No 12
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.50 E-value=2.9e-12 Score=110.77 Aligned_cols=181 Identities=17% Similarity=0.141 Sum_probs=106.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHHHHHHHHhcccCCCcc--chhhhHHHHH
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQKQLLSDLLMLADNSIR--NVYDGVNMIG 109 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 109 (352)
.++++|+|++|+||||+++.++..+...-...+++. ..... ...+...++..+......... ....+...+.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~-----~~~~~-~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~ 116 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLV-----NTRVD-AEDLLRMVAADFGLETEGRDKAALLRELEDFLI 116 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeee-----CCCCC-HHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Confidence 468899999999999999999988763311122221 11122 245666666554332211110 1112222222
Q ss_pred hh-hCCceEEEEEeCCCChh--hhhhhh---CCCCCCCCCceEEEEeCchhHhh--------h-cCcccEEecCCCCHhH
Q 045677 110 SR-LRHKKVLLLIDDVADVE--QLRGLF---GKRDWFGLGSMIIITTRDEHLLK--------L-HRVEEVYKLEALNFDE 174 (352)
Q Consensus 110 ~~-l~~~~~llvlDd~~~~~--~~~~l~---~~~~~~~~~~~iiitsr~~~~~~--------~-~~~~~~~~l~~l~~~e 174 (352)
.. ..+++.++|+||++... .++.+. ...........|++|........ . .+....+.+++++.+|
T Consensus 117 ~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e 196 (269)
T TIGR03015 117 EQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLDREE 196 (269)
T ss_pred HHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCCHHH
Confidence 22 25778999999997542 333332 22111123345566665432100 0 1124468899999999
Q ss_pred HHHHHHhhhcCCC--CCchhHHHHHHHHHHHcCCCchhHHHHHHhh
Q 045677 175 AFRLFCLKAFDTY--KPLEEYLELAKCFVKYASGLPLAVDVLVSFL 218 (352)
Q Consensus 175 ~~~ll~~~~~~~~--~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~~l 218 (352)
...++........ ......++.++.|++.|+|+|..|+.++..+
T Consensus 197 ~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 197 TREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 9999987663222 1122456889999999999999999988876
No 13
>PF14516 AAA_35: AAA-like domain
Probab=99.42 E-value=1.3e-10 Score=102.79 Aligned_cols=287 Identities=13% Similarity=0.053 Sum_probs=157.3
Q ss_pred CCCCCcCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeecccccc-CCCcHHHH
Q 045677 4 ELEIPKELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCD-KEGSVISL 82 (352)
Q Consensus 4 ~~~~~~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l 82 (352)
-+..++.+|+|....+.+.+.+... ...+.|.||..+|||+|+..+.+.+++.....+++ ++..... .......+
T Consensus 6 ~~~~~~~Yi~R~~~e~~~~~~i~~~---G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~i-d~~~~~~~~~~~~~~f 81 (331)
T PF14516_consen 6 LPLDSPFYIERPPAEQECYQEIVQP---GSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYI-DLQQLGSAIFSDLEQF 81 (331)
T ss_pred CCCCCCcccCchHHHHHHHHHHhcC---CCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEE-EeecCCCcccCCHHHH
Confidence 3556677899997777777777732 36889999999999999999998886653333443 4444332 22233445
Q ss_pred HHHHHHHHhcccCCC----------ccchhhhHHHHHhhh---CCceEEEEEeCCCChhh----hhhhhCCC----CC--
Q 045677 83 QKQLLSDLLMLADNS----------IRNVYDGVNMIGSRL---RHKKVLLLIDDVADVEQ----LRGLFGKR----DW-- 139 (352)
Q Consensus 83 ~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~l---~~~~~llvlDd~~~~~~----~~~l~~~~----~~-- 139 (352)
+..++..+...-... ..........+.+.+ .+++++|+||+++..-. ..+++..+ ..
T Consensus 82 ~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~ 161 (331)
T PF14516_consen 82 LRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRK 161 (331)
T ss_pred HHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcc
Confidence 555554443322111 112223333343332 26899999999963211 11222111 10
Q ss_pred -C--CCCceEEEEeCchhH------hhhcCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchh
Q 045677 140 -F--GLGSMIIITTRDEHL------LKLHRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLA 210 (352)
Q Consensus 140 -~--~~~~~iiitsr~~~~------~~~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~ 210 (352)
. -...++++....+.. .+..+....++|++++.+|+..|+.+.... . .+..++.++.+++|+|+.
T Consensus 162 ~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~---~---~~~~~~~l~~~tgGhP~L 235 (331)
T PF14516_consen 162 NNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE---F---SQEQLEQLMDWTGGHPYL 235 (331)
T ss_pred cCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc---C---CHHHHHHHHHHHCCCHHH
Confidence 0 112233333222111 111233457999999999999998776422 1 123399999999999999
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHccCCchhHHHHHHhhhccC--cHhhhhhhhhhccCCCCCCHHHHHHHHHhc--CCCc
Q 045677 211 VDVLVSFLFGRPVDQWRSTQERLKRDPENKILGILQISFDGL--KEAEKNIFLDVACFYKWENRDYVSKILDSC--GFDP 286 (352)
Q Consensus 211 i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L--~~~~~~~l~~ls~~~~~~~~~~l~~~~~~~--~~~~ 286 (352)
+..++..+.++.. .....++.-.... .....-++.-+..| .+..+..+ ..++... ....
T Consensus 236 v~~~~~~l~~~~~-~~~~l~~~a~~~~-~~~~~hL~~l~~~L~~~~~L~~~~---------------~~il~~~~~~~~~ 298 (331)
T PF14516_consen 236 VQKACYLLVEEQI-TLEQLLEEAITDN-GIYNDHLDRLLDRLQQNPELLEAY---------------QQILFSGEPVDLD 298 (331)
T ss_pred HHHHHHHHHHccC-cHHHHHHHHHHhc-ccHHHHHHHHHHHHccCHHHHHHH---------------HHHHhCCCCcccC
Confidence 9999999977421 1222222211110 11122333333333 12222222 2222211 1112
Q ss_pred hhchHHHhhccceeecCCCceehhHHHHHHH
Q 045677 287 IIGISVLIEKSLLTVRENDRLWMHDLLQEMG 317 (352)
Q Consensus 287 ~~~l~~L~~~~li~~~~~~~~~~H~lir~~~ 317 (352)
......|...|||...++.-..-.++.|++.
T Consensus 299 ~~~~~~L~~~GLV~~~~~~~~~~n~iY~~yF 329 (331)
T PF14516_consen 299 SDDIYKLESLGLVKRDGNQLEVRNPIYRQYF 329 (331)
T ss_pred hHHHHHHHHCCeEEEeCCEEEEEcHHHHHHh
Confidence 3456789999999999444334456777665
No 14
>PF05729 NACHT: NACHT domain
Probab=99.38 E-value=5.3e-12 Score=100.79 Aligned_cols=143 Identities=24% Similarity=0.334 Sum_probs=84.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcCCCc-----ceeEeeeccccccCCCcHHHHHHHHHHHHhcccCCCccchhhhHHH
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLMSHEFD-----GSSFLADVRERCDKEGSVISLQKQLLSDLLMLADNSIRNVYDGVNM 107 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (352)
|+++|+|++|+|||+++..++..+..... ..+++...+........ ..+...+...... ....... .
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~----~~~~~~~---~ 72 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNS-RSLADLLFDQLPE----SIAPIEE---L 72 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhcccc-chHHHHHHHhhcc----chhhhHH---H
Confidence 57899999999999999999988655532 23334444444333222 2233333322211 1111111 1
Q ss_pred HHh-hhCCceEEEEEeCCCChhh---------hhhhhC-CCCC-CCCCceEEEEeCchhH---hhhcCcccEEecCCCCH
Q 045677 108 IGS-RLRHKKVLLLIDDVADVEQ---------LRGLFG-KRDW-FGLGSMIIITTRDEHL---LKLHRVEEVYKLEALNF 172 (352)
Q Consensus 108 ~~~-~l~~~~~llvlDd~~~~~~---------~~~l~~-~~~~-~~~~~~iiitsr~~~~---~~~~~~~~~~~l~~l~~ 172 (352)
+.. .....+++||||++++... +..++. .+.. ...++++++|+|.... .........+.+.+|+.
T Consensus 73 ~~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~ 152 (166)
T PF05729_consen 73 LQELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSE 152 (166)
T ss_pred HHHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCH
Confidence 111 2246899999999964322 222222 2221 2568899999997655 22234446899999999
Q ss_pred hHHHHHHHhhh
Q 045677 173 DEAFRLFCLKA 183 (352)
Q Consensus 173 ~e~~~ll~~~~ 183 (352)
++..+++++..
T Consensus 153 ~~~~~~~~~~f 163 (166)
T PF05729_consen 153 EDIKQYLRKYF 163 (166)
T ss_pred HHHHHHHHHHh
Confidence 99999997764
No 15
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.31 E-value=2.7e-10 Score=101.92 Aligned_cols=207 Identities=14% Similarity=0.055 Sum_probs=113.3
Q ss_pred CCCCcCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCC-cceeEeeeccccccCCCcHHHHH
Q 045677 5 LEIPKELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEF-DGSSFLADVRERCDKEGSVISLQ 83 (352)
Q Consensus 5 ~~~~~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~ 83 (352)
|..-+.++|++..++.|.+++.. +..+.++++||+|+|||++|..+++.+.... .......++........ ..+.
T Consensus 11 P~~~~~~~g~~~~~~~L~~~~~~--~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~--~~~~ 86 (337)
T PRK12402 11 PALLEDILGQDEVVERLSRAVDS--PNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGK--KYLV 86 (337)
T ss_pred CCcHHHhcCCHHHHHHHHHHHhC--CCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcch--hhhh
Confidence 33446789999999999998884 3445688999999999999999998865332 22222222211110000 0000
Q ss_pred --HHHHHHHhcccCCCccchhhhHHHHHhh---h--CCceEEEEEeCCCChh--hhhhhhCCCCCCCCCceEEEEeCch-
Q 045677 84 --KQLLSDLLMLADNSIRNVYDGVNMIGSR---L--RHKKVLLLIDDVADVE--QLRGLFGKRDWFGLGSMIIITTRDE- 153 (352)
Q Consensus 84 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l--~~~~~llvlDd~~~~~--~~~~l~~~~~~~~~~~~iiitsr~~- 153 (352)
..+...+.................+... . ...+-+|||||++... ....+...+......+++|+++...
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~ 166 (337)
T PRK12402 87 EDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPS 166 (337)
T ss_pred cCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChh
Confidence 0000000000000000111111111111 1 1334589999996442 2333333333334556777776543
Q ss_pred hHhh-hcCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchhHHHHHHh
Q 045677 154 HLLK-LHRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLAVDVLVSF 217 (352)
Q Consensus 154 ~~~~-~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~~ 217 (352)
.+.. .......+.+.+++.++...++.+.+...... ..++.++.+++.++|++-.+......
T Consensus 167 ~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~--~~~~al~~l~~~~~gdlr~l~~~l~~ 229 (337)
T PRK12402 167 KLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD--YDDDGLELIAYYAGGDLRKAILTLQT 229 (337)
T ss_pred hCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 2222 22334678899999999999998865322221 33578889999999998877654443
No 16
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.29 E-value=3.9e-11 Score=103.84 Aligned_cols=170 Identities=23% Similarity=0.375 Sum_probs=103.7
Q ss_pred cCcccccHHH---HHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHHH
Q 045677 9 KELVGMESRL---EKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQKQ 85 (352)
Q Consensus 9 ~~~vGR~~~l---~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 85 (352)
+.+||.+..+ +-|.+.+. .+......+|||||+||||||+.++......|... +...+.+.++ +.
T Consensus 24 de~vGQ~HLlg~~~~lrr~v~--~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~---------sAv~~gvkdl-r~ 91 (436)
T COG2256 24 DEVVGQEHLLGEGKPLRRAVE--AGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEAL---------SAVTSGVKDL-RE 91 (436)
T ss_pred HHhcChHhhhCCCchHHHHHh--cCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEe---------ccccccHHHH-HH
Confidence 4466666555 23444455 45667788999999999999999998877664321 1112221222 22
Q ss_pred HHHHHhcccCCCccchhhhHHHHHhhhCCceEEEEEeCCC--ChhhhhhhhCCCCCCCCCceEEE--EeCchhH---hhh
Q 045677 86 LLSDLLMLADNSIRNVYDGVNMIGSRLRHKKVLLLIDDVA--DVEQLRGLFGKRDWFGLGSMIII--TTRDEHL---LKL 158 (352)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~--~~~~~~~l~~~~~~~~~~~~iii--tsr~~~~---~~~ 158 (352)
++... -.....+++++|++|+++ +..+-+.|++.+. .|..++| ||-++.. ...
T Consensus 92 i~e~a-----------------~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE---~G~iilIGATTENPsF~ln~AL 151 (436)
T COG2256 92 IIEEA-----------------RKNRLLGRRTILFLDEIHRFNKAQQDALLPHVE---NGTIILIGATTENPSFELNPAL 151 (436)
T ss_pred HHHHH-----------------HHHHhcCCceEEEEehhhhcChhhhhhhhhhhc---CCeEEEEeccCCCCCeeecHHH
Confidence 22210 122234789999999995 5555666666653 4555555 4544421 112
Q ss_pred cCcccEEecCCCCHhHHHHHHHhhhcCCC-----CCchhHHHHHHHHHHHcCCCchh
Q 045677 159 HRVEEVYKLEALNFDEAFRLFCLKAFDTY-----KPLEEYLELAKCFVKYASGLPLA 210 (352)
Q Consensus 159 ~~~~~~~~l~~l~~~e~~~ll~~~~~~~~-----~~~~~~~~~~~~i~~~~~G~Pl~ 210 (352)
.....++.|++|+.++...++.+...... ......++..+.++..++|--..
T Consensus 152 lSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~ 208 (436)
T COG2256 152 LSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARR 208 (436)
T ss_pred hhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHH
Confidence 34567899999999999999987331111 11113456778888888885543
No 17
>PRK06893 DNA replication initiation factor; Validated
Probab=99.27 E-value=2.6e-10 Score=95.61 Aligned_cols=154 Identities=17% Similarity=0.192 Sum_probs=93.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHHhh
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQKQLLSDLLMLADNSIRNVYDGVNMIGSR 111 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (352)
.+.+.|+|++|+|||+|+..+++.+..+.....|+.. .. . ......+ .+.
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~-~~---~----~~~~~~~----------------------~~~ 88 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPL-SK---S----QYFSPAV----------------------LEN 88 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeH-HH---h----hhhhHHH----------------------Hhh
Confidence 4678999999999999999999987655544555541 10 0 0000011 111
Q ss_pred hCCceEEEEEeCCCCh---hhhh-hhhCCCCCC-CCCceEE-EEeCc---------hhHhhhcCcccEEecCCCCHhHHH
Q 045677 112 LRHKKVLLLIDDVADV---EQLR-GLFGKRDWF-GLGSMII-ITTRD---------EHLLKLHRVEEVYKLEALNFDEAF 176 (352)
Q Consensus 112 l~~~~~llvlDd~~~~---~~~~-~l~~~~~~~-~~~~~ii-itsr~---------~~~~~~~~~~~~~~l~~l~~~e~~ 176 (352)
+ .+.-+|+|||++.. ..|. .++..+... ..+..+| +|+.. +.+.+.+.....+++++++.++.+
T Consensus 89 ~-~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~ 167 (229)
T PRK06893 89 L-EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKI 167 (229)
T ss_pred c-ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHH
Confidence 1 12349999999743 2333 232322211 2344554 45543 123333344568899999999999
Q ss_pred HHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchhHHHHHHhh
Q 045677 177 RLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLAVDVLVSFL 218 (352)
Q Consensus 177 ~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~~l 218 (352)
+++++.+...... ..++..+-|++.+.|..-.+..+...+
T Consensus 168 ~iL~~~a~~~~l~--l~~~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 168 IVLQRNAYQRGIE--LSDEVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred HHHHHHHHHcCCC--CCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 9999877543322 345788889999999888776665544
No 18
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.26 E-value=6.6e-10 Score=105.66 Aligned_cols=284 Identities=15% Similarity=0.106 Sum_probs=146.0
Q ss_pred CCCCCcCcccccHHHHHHHHHHhc---CCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCC-----Cc-ceeEeeecccccc
Q 045677 4 ELEIPKELVGMESRLEKLKFLMCT---GSNDVRTIGIWGMGGLGKTTLARVVYDLMSHE-----FD-GSSFLADVRERCD 74 (352)
Q Consensus 4 ~~~~~~~~vGR~~~l~~l~~~l~~---~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~-----~~-~~~~~~~~~~~~~ 74 (352)
+...|+.+.||+.|+++|...|.. ..+...+++|+|++|+|||+.+..+...+... .. ..+.+.++.....
T Consensus 750 ~DYVPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lst 829 (1164)
T PTZ00112 750 LDVVPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVH 829 (1164)
T ss_pred cccCCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCC
Confidence 456788999999999999998885 23334567899999999999999998876432 11 2222333322222
Q ss_pred CCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHHhhhC---CceEEEEEeCCCChh-----hhhhhhCCCCCCCCCce-
Q 045677 75 KEGSVISLQKQLLSDLLMLADNSIRNVYDGVNMIGSRLR---HKKVLLLIDDVADVE-----QLRGLFGKRDWFGLGSM- 145 (352)
Q Consensus 75 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~llvlDd~~~~~-----~~~~l~~~~~~~~~~~~- 145 (352)
. ..+...+..++....+............+...+. ....+||||+++... .+-.++.... ..+++
T Consensus 830 p----~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~--~s~SKL 903 (1164)
T PTZ00112 830 P----NAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPT--KINSKL 903 (1164)
T ss_pred H----HHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhh--ccCCeE
Confidence 2 4455555555543332222223334444444432 235699999996332 2222232222 12333
Q ss_pred -EEEEeCchh----HhhhcC---cccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHH---HcCCC-chhHHH
Q 045677 146 -IIITTRDEH----LLKLHR---VEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVK---YASGL-PLAVDV 213 (352)
Q Consensus 146 -iiitsr~~~----~~~~~~---~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~---~~~G~-Pl~i~~ 213 (352)
+|.++.+.. +.+... ....+..+|++.++..+++..++.... ....+++++.+++ ...|- =.||.+
T Consensus 904 iLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~--gVLdDdAIELIArkVAq~SGDARKALDI 981 (1164)
T PTZ00112 904 VLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCK--EIIDHTAIQLCARKVANVSGDIRKALQI 981 (1164)
T ss_pred EEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCC--CCCCHHHHHHHHHhhhhcCCHHHHHHHH
Confidence 333343211 111111 122467799999999999998874321 1122344444443 33343 333333
Q ss_pred HHHhhc--CCC---hhHHHHHHHHHccCCchhHHHHHHhhhccCcHhhhhhhhhhccCCC-----CCCHHHHH----HHH
Q 045677 214 LVSFLF--GRP---VDQWRSTQERLKRDPENKILGILQISFDGLKEAEKNIFLDVACFYK-----WENRDYVS----KIL 279 (352)
Q Consensus 214 ~~~~l~--~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~l~~ls~~~~-----~~~~~~l~----~~~ 279 (352)
+-.+.. +.. .+....+.+.+ ....+...+..||.+.+.+|..+...-. .++...+. .++
T Consensus 982 LRrAgEikegskVT~eHVrkAleei-------E~srI~e~IktLPlHqKLVLlALIlLlk~tg~~~i~TGEVYerYk~Lc 1054 (1164)
T PTZ00112 982 CRKAFENKRGQKIVPRDITEATNQL-------FDSPLTNAINYLPWPFKMFLTCLIVELRMLNDFIIPYKKVLNRYKVLV 1054 (1164)
T ss_pred HHHHHhhcCCCccCHHHHHHHHHHH-------HhhhHHHHHHcCCHHHHHHHHHHHHHHhhcCCCceeHHHHHHHHHHHH
Confidence 322221 111 11122221111 1223455677899998888775543211 23333322 222
Q ss_pred H-------hcCCC--chhchHHHhhccceeec
Q 045677 280 D-------SCGFD--PIIGISVLIEKSLLTVR 302 (352)
Q Consensus 280 ~-------~~~~~--~~~~l~~L~~~~li~~~ 302 (352)
. .+... ....+.+|...|+|-..
T Consensus 1055 e~~Gk~iGv~plTqRV~d~L~eL~~LGIIl~e 1086 (1164)
T PTZ00112 1055 ETSGKYIGMCSNNELFKIMLDKLVKMGILLIR 1086 (1164)
T ss_pred HhhhhhcCCCCcHHHHHHHHHHHHhcCeEEec
Confidence 2 11111 23457788888888644
No 19
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=2.5e-09 Score=95.13 Aligned_cols=289 Identities=17% Similarity=0.171 Sum_probs=163.2
Q ss_pred CCCCCCcCcccccHHHHHHHHHHhc--CCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcce-eEeeeccccccCCCcH
Q 045677 3 SELEIPKELVGMESRLEKLKFLMCT--GSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGS-SFLADVRERCDKEGSV 79 (352)
Q Consensus 3 ~~~~~~~~~vGR~~~l~~l~~~l~~--~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 79 (352)
.+...|..+.+|+.+++++...|.. .++.+.-++|+|++|+|||+.++.+.+++....... +.+.++......
T Consensus 11 ~~~~iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~---- 86 (366)
T COG1474 11 LEDYIPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTP---- 86 (366)
T ss_pred CCCCCcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCH----
Confidence 4667788899999999999988876 334444599999999999999999999987664433 444444333333
Q ss_pred HHHHHHHHHHHhcccCCCccchhhhHHHHHhhhC--CceEEEEEeCCCChh-----hhhhhhCCCCCCCCCceEEEEeCc
Q 045677 80 ISLQKQLLSDLLMLADNSIRNVYDGVNMIGSRLR--HKKVLLLIDDVADVE-----QLRGLFGKRDWFGLGSMIIITTRD 152 (352)
Q Consensus 80 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~llvlDd~~~~~-----~~~~l~~~~~~~~~~~~iiitsr~ 152 (352)
.++...++.++...+ .......+....+.+.+. +..+++|||+++... .+-.+...........-+|..+-+
T Consensus 87 ~~i~~~i~~~~~~~p-~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~ 165 (366)
T COG1474 87 YQVLSKILNKLGKVP-LTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSND 165 (366)
T ss_pred HHHHHHHHHHcCCCC-CCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEecc
Confidence 667777777765222 222334444555555553 578999999995332 223333332222112223333333
Q ss_pred hhHhhhcC-------cccEEecCCCCHhHHHHHHHhhhcCCCCC---chhHHHHHHHHHHHcCCCc-hhHHHH--HHhhc
Q 045677 153 EHLLKLHR-------VEEVYKLEALNFDEAFRLFCLKAFDTYKP---LEEYLELAKCFVKYASGLP-LAVDVL--VSFLF 219 (352)
Q Consensus 153 ~~~~~~~~-------~~~~~~l~~l~~~e~~~ll~~~~~~~~~~---~~~~~~~~~~i~~~~~G~P-l~i~~~--~~~l~ 219 (352)
........ ....+..+|.+.+|..+++..+....... ....-+.+..+....+|-- .||..+ +..+.
T Consensus 166 ~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiA 245 (366)
T COG1474 166 DKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIA 245 (366)
T ss_pred HHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHH
Confidence 32211111 12347899999999999999887433222 2222334444555555522 222221 11111
Q ss_pred C-C-----ChhHHHHHHHHHccCCchhHHHHHHhhhccCcHhhhhhhhhhccCCCCCCHHHH----HHHHHhcCC---Cc
Q 045677 220 G-R-----PVDQWRSTQERLKRDPENKILGILQISFDGLKEAEKNIFLDVACFYKWENRDYV----SKILDSCGF---DP 286 (352)
Q Consensus 220 ~-~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~l~~ls~~~~~~~~~~l----~~~~~~~~~---~~ 286 (352)
+ . ..+....... ..-...+...+..|+.+++.++........+++...+ ..++...+. ..
T Consensus 246 e~~~~~~v~~~~v~~a~~-------~~~~~~~~~~~~~L~~~~ki~L~~i~~~~~~~~~~~~y~~y~~~~~~~~~~~~~~ 318 (366)
T COG1474 246 EREGSRKVSEDHVREAQE-------EIERDVLEEVLKTLPLHQKIVLLAIVELTVEISTGELYDVYESLCERLRTSQRRF 318 (366)
T ss_pred HhhCCCCcCHHHHHHHHH-------HhhHHHHHHHHHcCCHhHHHHHHHHHHhcCCCChHHHHHHHHHHHhhhCchHHHH
Confidence 1 1 0111111111 1112245556888999888887766655344443333 334433444 33
Q ss_pred hhchHHHhhccceeecC
Q 045677 287 IIGISVLIEKSLLTVRE 303 (352)
Q Consensus 287 ~~~l~~L~~~~li~~~~ 303 (352)
...+++|.-.|+|....
T Consensus 319 ~~ii~~L~~lgiv~~~~ 335 (366)
T COG1474 319 SDIISELEGLGIVSASL 335 (366)
T ss_pred HHHHHHHHhcCeEEeee
Confidence 45688999999998543
No 20
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.23 E-value=5.6e-10 Score=102.09 Aligned_cols=181 Identities=21% Similarity=0.317 Sum_probs=109.6
Q ss_pred CCCCcCcccccHHHHH---HHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHH
Q 045677 5 LEIPKELVGMESRLEK---LKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVIS 81 (352)
Q Consensus 5 ~~~~~~~vGR~~~l~~---l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (352)
|..-+.|||++..+.. |..++.. ...+.++|+|++|+||||||+.+++.....|. .+. . . ... ..
T Consensus 8 P~~l~d~vGq~~~v~~~~~L~~~i~~--~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~---~l~-a--~---~~~-~~ 75 (413)
T PRK13342 8 PKTLDEVVGQEHLLGPGKPLRRMIEA--GRLSSMILWGPPGTGKTTLARIIAGATDAPFE---ALS-A--V---TSG-VK 75 (413)
T ss_pred CCCHHHhcCcHHHhCcchHHHHHHHc--CCCceEEEECCCCCCHHHHHHHHHHHhCCCEE---EEe-c--c---ccc-HH
Confidence 3445679999988776 8888873 44567889999999999999999987654431 111 0 1 001 11
Q ss_pred HHHHHHHHHhcccCCCccchhhhHHHHHh-hhCCceEEEEEeCCCCh--hhhhhhhCCCCCCCCCceEEE-E-eCchh--
Q 045677 82 LQKQLLSDLLMLADNSIRNVYDGVNMIGS-RLRHKKVLLLIDDVADV--EQLRGLFGKRDWFGLGSMIII-T-TRDEH-- 154 (352)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~iii-t-sr~~~-- 154 (352)
.++.+... ... ...+++.+|+||+++.. ...+.++..+. .+..++| + |.+..
T Consensus 76 ~ir~ii~~------------------~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~ 134 (413)
T PRK13342 76 DLREVIEE------------------ARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFE 134 (413)
T ss_pred HHHHHHHH------------------HHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhh
Confidence 11112111 111 11357789999999743 34455555443 2333444 2 33321
Q ss_pred H-hhhcCcccEEecCCCCHhHHHHHHHhhhcCCCCC-chhHHHHHHHHHHHcCCCchhHHHHHHhh
Q 045677 155 L-LKLHRVEEVYKLEALNFDEAFRLFCLKAFDTYKP-LEEYLELAKCFVKYASGLPLAVDVLVSFL 218 (352)
Q Consensus 155 ~-~~~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~-~~~~~~~~~~i~~~~~G~Pl~i~~~~~~l 218 (352)
+ .........+.+.+++.++...++.+........ ....++..+.+++.++|.+..+..+....
T Consensus 135 l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~~ 200 (413)
T PRK13342 135 VNPALLSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLELA 200 (413)
T ss_pred ccHHHhccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 1 1122345689999999999999998765321111 12345778899999999998876655443
No 21
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.23 E-value=5.8e-10 Score=93.80 Aligned_cols=175 Identities=18% Similarity=0.199 Sum_probs=103.6
Q ss_pred cCccc--ccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHHHH
Q 045677 9 KELVG--MESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQKQL 86 (352)
Q Consensus 9 ~~~vG--R~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 86 (352)
++|++ .+..++.+.+++. ....+.++|+|++|+|||+||+.+++.........+++. +...... ...+
T Consensus 15 ~~~~~~~~~~~~~~l~~~~~--~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~-~~~~~~~-------~~~~ 84 (226)
T TIGR03420 15 DNFYAGGNAELLAALRQLAA--GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLP-LAELAQA-------DPEV 84 (226)
T ss_pred cCcCcCCcHHHHHHHHHHHh--cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEe-HHHHHHh-------HHHH
Confidence 34553 4446778888765 344578999999999999999999988654433333332 2221110 0001
Q ss_pred HHHHhcccCCCccchhhhHHHHHhhhCCceEEEEEeCCCChh---h-hhhhhCCCCC-CCCCceEEEEeCchhH------
Q 045677 87 LSDLLMLADNSIRNVYDGVNMIGSRLRHKKVLLLIDDVADVE---Q-LRGLFGKRDW-FGLGSMIIITTRDEHL------ 155 (352)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~~---~-~~~l~~~~~~-~~~~~~iiitsr~~~~------ 155 (352)
...+. +.-+|||||++... . ...+...+.. ...+..+|+|++....
T Consensus 85 ----------------------~~~~~-~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~ 141 (226)
T TIGR03420 85 ----------------------LEGLE-QADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRL 141 (226)
T ss_pred ----------------------Hhhcc-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCccc
Confidence 01111 22389999996432 1 2233322211 1223478888774321
Q ss_pred ---hhhcCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchhHHHHHHhh
Q 045677 156 ---LKLHRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLAVDVLVSFL 218 (352)
Q Consensus 156 ---~~~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~~l 218 (352)
.........+++++++.++...++......... ...++.++.+.+.+.|+|..+..+...+
T Consensus 142 ~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~--~~~~~~l~~L~~~~~gn~r~L~~~l~~~ 205 (226)
T TIGR03420 142 PDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGL--QLPDEVADYLLRHGSRDMGSLMALLDAL 205 (226)
T ss_pred HHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 111222457899999999999988875422211 2334777888889999999887765543
No 22
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.22 E-value=3e-09 Score=100.56 Aligned_cols=194 Identities=14% Similarity=0.096 Sum_probs=116.3
Q ss_pred CCcCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHHHH
Q 045677 7 IPKELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQKQL 86 (352)
Q Consensus 7 ~~~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 86 (352)
.=+++||.+..++.|.+++..+ .-.+.++++|+.|+||||++..+++.+....... . ..++. =..+..+
T Consensus 14 tFdEVIGQe~Vv~~L~~aL~~g-RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~-~-~PCG~--------C~sCr~I 82 (830)
T PRK07003 14 DFASLVGQEHVVRALTHALDGG-RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVT-S-QPCGV--------CRACREI 82 (830)
T ss_pred cHHHHcCcHHHHHHHHHHHhcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCC-C-CCCcc--------cHHHHHH
Confidence 3356899999999999999853 2356778999999999999999998763221000 0 00000 0011111
Q ss_pred HHH----HhcccCCCccchhhhHHHHHhh----hCCceEEEEEeCCCCh--hhhhhhhCCCCCCCCCceEEEEeCchh-H
Q 045677 87 LSD----LLMLADNSIRNVYDGVNMIGSR----LRHKKVLLLIDDVADV--EQLRGLFGKRDWFGLGSMIIITTRDEH-L 155 (352)
Q Consensus 87 ~~~----~~~~~~~~~~~~~~~~~~~~~~----l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~iiitsr~~~-~ 155 (352)
... +......+...+++..+.+... ..++.-++|||+++.. ..++.++..+.....++++|++|.+.. +
T Consensus 83 ~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KI 162 (830)
T PRK07003 83 DEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKI 162 (830)
T ss_pred hcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhc
Confidence 100 0000111111122222222211 1244568999999754 447778777766567888888777643 2
Q ss_pred hhh-cCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCch-hHHH
Q 045677 156 LKL-HRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPL-AVDV 213 (352)
Q Consensus 156 ~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl-~i~~ 213 (352)
... ...+..+.+++++.++..+.|.+.+..... ....+.++.|.+.++|... +|.+
T Consensus 163 p~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI--~id~eAL~lIA~~A~GsmRdALsL 220 (830)
T PRK07003 163 PVTVLSRCLQFNLKQMPAGHIVSHLERILGEERI--AFEPQALRLLARAAQGSMRDALSL 220 (830)
T ss_pred cchhhhheEEEecCCcCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 222 345678999999999999999887632221 2345778899999999765 4444
No 23
>PLN03025 replication factor C subunit; Provisional
Probab=99.21 E-value=2.2e-09 Score=94.81 Aligned_cols=189 Identities=11% Similarity=0.124 Sum_probs=110.2
Q ss_pred CCCCcCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHh-cCCCcceeEeeeccccccCCCcHHHHH
Q 045677 5 LEIPKELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLM-SHEFDGSSFLADVRERCDKEGSVISLQ 83 (352)
Q Consensus 5 ~~~~~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~ 83 (352)
|..-..++|.+..++.|..++.. +..+.+.++||+|+|||++|..+++.+ ...+...+.-.+.. . ... .+.+
T Consensus 9 P~~l~~~~g~~~~~~~L~~~~~~--~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~s---d-~~~-~~~v 81 (319)
T PLN03025 9 PTKLDDIVGNEDAVSRLQVIARD--GNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNAS---D-DRG-IDVV 81 (319)
T ss_pred CCCHHHhcCcHHHHHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeeccc---c-ccc-HHHH
Confidence 33446689999999999988874 344567899999999999999999886 33332222211111 0 001 1222
Q ss_pred HHHHHHHhcccCCCccchhhhHHHHHhhhCCceEEEEEeCCCCh--hhhhhhhCCCCCCCCCceEEEEeCch-hHhh-hc
Q 045677 84 KQLLSDLLMLADNSIRNVYDGVNMIGSRLRHKKVLLLIDDVADV--EQLRGLFGKRDWFGLGSMIIITTRDE-HLLK-LH 159 (352)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~iiitsr~~-~~~~-~~ 159 (352)
+..+..+...... ...++.-+++||+++.. ..-..+...+...+..+++|+++... .+.+ ..
T Consensus 82 r~~i~~~~~~~~~--------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~ 147 (319)
T PLN03025 82 RNKIKMFAQKKVT--------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQ 147 (319)
T ss_pred HHHHHHHHhcccc--------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHH
Confidence 2222211110000 00134569999999743 23333433333334556666665432 2222 12
Q ss_pred CcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchhHHHHHH
Q 045677 160 RVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLAVDVLVS 216 (352)
Q Consensus 160 ~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~ 216 (352)
.....+++++++.++....+...+...... ..++.+..+++.++|....+.....
T Consensus 148 SRc~~i~f~~l~~~~l~~~L~~i~~~egi~--i~~~~l~~i~~~~~gDlR~aln~Lq 202 (319)
T PLN03025 148 SRCAIVRFSRLSDQEILGRLMKVVEAEKVP--YVPEGLEAIIFTADGDMRQALNNLQ 202 (319)
T ss_pred HhhhcccCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 235679999999999999888776332221 2346788999999998866654444
No 24
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.21 E-value=2.2e-09 Score=95.27 Aligned_cols=185 Identities=14% Similarity=0.142 Sum_probs=109.0
Q ss_pred cCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCC-CcceeEeeeccccccCCCcHHHHHHHHH
Q 045677 9 KELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHE-FDGSSFLADVRERCDKEGSVISLQKQLL 87 (352)
Q Consensus 9 ~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 87 (352)
..++|++..++.+..++.. +..+.++|+|++|+|||++++.++..+... +...+...+. +... . .......+
T Consensus 17 ~~~~g~~~~~~~l~~~i~~--~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~---~~~~-~-~~~~~~~i 89 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKE--KNMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNA---SDER-G-IDVIRNKI 89 (319)
T ss_pred HHhcCcHHHHHHHHHHHhC--CCCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecc---cccc-c-hHHHHHHH
Confidence 5589999999999999984 333457999999999999999999886433 2111111111 1111 1 11111111
Q ss_pred HHHhcccCCCccchhhhHHHHHhhhCCceEEEEEeCCCCh--hhhhhhhCCCCCCCCCceEEEEeCch-hH-hhhcCccc
Q 045677 88 SDLLMLADNSIRNVYDGVNMIGSRLRHKKVLLLIDDVADV--EQLRGLFGKRDWFGLGSMIIITTRDE-HL-LKLHRVEE 163 (352)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~iiitsr~~-~~-~~~~~~~~ 163 (352)
..+....+ .....+-++++|+++.. .....+...+......+.+|+++... .+ ........
T Consensus 90 ~~~~~~~~---------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~ 154 (319)
T PRK00440 90 KEFARTAP---------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCA 154 (319)
T ss_pred HHHHhcCC---------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhh
Confidence 11111000 00123569999999643 23344444444334556777766432 11 11123345
Q ss_pred EEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchhHHHHHHh
Q 045677 164 VYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLAVDVLVSF 217 (352)
Q Consensus 164 ~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~~ 217 (352)
.+.+++++.++...++...+..... ...++.++.+++.++|.+.-+......
T Consensus 155 ~~~~~~l~~~ei~~~l~~~~~~~~~--~i~~~al~~l~~~~~gd~r~~~~~l~~ 206 (319)
T PRK00440 155 VFRFSPLKKEAVAERLRYIAENEGI--EITDDALEAIYYVSEGDMRKAINALQA 206 (319)
T ss_pred eeeeCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 7899999999999998877633222 133577889999999998876544433
No 25
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.17 E-value=8.1e-09 Score=92.77 Aligned_cols=197 Identities=16% Similarity=0.137 Sum_probs=115.5
Q ss_pred CCCCcCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHH
Q 045677 5 LEIPKELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQK 84 (352)
Q Consensus 5 ~~~~~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (352)
|..-..++|.+..++.|...+..+ .-++.++++||+|+||||+|..+++.+....... . .+... -..+.
T Consensus 12 P~~~~~iiGq~~~~~~l~~~~~~~-~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~---~------~pc~~-c~~c~ 80 (363)
T PRK14961 12 PQYFRDIIGQKHIVTAISNGLSLG-RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGIT---S------NPCRK-CIICK 80 (363)
T ss_pred CCchhhccChHHHHHHHHHHHHcC-CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCC---C------CCCCC-CHHHH
Confidence 334467899999999999988853 2356788999999999999999998864211000 0 00000 00011
Q ss_pred HHHHH----HhcccCCCccchhhhHHHHHhhh-----CCceEEEEEeCCCChh--hhhhhhCCCCCCCCCceEEEEeCch
Q 045677 85 QLLSD----LLMLADNSIRNVYDGVNMIGSRL-----RHKKVLLLIDDVADVE--QLRGLFGKRDWFGLGSMIIITTRDE 153 (352)
Q Consensus 85 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~l-----~~~~~llvlDd~~~~~--~~~~l~~~~~~~~~~~~iiitsr~~ 153 (352)
.+... +............+.. .+.+.+ .++.-++|||+++... .+..++..+...+...++|++|.+.
T Consensus 81 ~~~~~~~~d~~~~~~~~~~~v~~ir-~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~ 159 (363)
T PRK14961 81 EIEKGLCLDLIEIDAASRTKVEEMR-EILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDV 159 (363)
T ss_pred HHhcCCCCceEEecccccCCHHHHH-HHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCCh
Confidence 11100 0000000001111111 111111 2345699999997543 4667777776656677777766543
Q ss_pred -hHhhh-cCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchhHHHHH
Q 045677 154 -HLLKL-HRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLAVDVLV 215 (352)
Q Consensus 154 -~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~ 215 (352)
.+... ......+++++++.++..+.+...+.... ....++.++.|+..++|.|..+....
T Consensus 160 ~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g--~~i~~~al~~ia~~s~G~~R~al~~l 221 (363)
T PRK14961 160 EKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKES--IDTDEYALKLIAYHAHGSMRDALNLL 221 (363)
T ss_pred HhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 33222 23457899999999999998887653222 11234678889999999997655443
No 26
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.16 E-value=2.9e-09 Score=99.48 Aligned_cols=195 Identities=19% Similarity=0.130 Sum_probs=116.9
Q ss_pred CCcCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHHHH
Q 045677 7 IPKELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQKQL 86 (352)
Q Consensus 7 ~~~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 86 (352)
.-..+||.+...+.|..++..+. -.+.++++|++|+||||+|+.+++.+........--++. -..+..+
T Consensus 13 tFddVIGQe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~----------C~sC~~I 81 (702)
T PRK14960 13 NFNELVGQNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEV----------CATCKAV 81 (702)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCcc----------CHHHHHH
Confidence 33568999999999999998532 357889999999999999999998863221000000000 0011111
Q ss_pred HHH----HhcccCCCccchhhhHHHHHh---h-hCCceEEEEEeCCCCh--hhhhhhhCCCCCCCCCceEEEEeCchh-H
Q 045677 87 LSD----LLMLADNSIRNVYDGVNMIGS---R-LRHKKVLLLIDDVADV--EQLRGLFGKRDWFGLGSMIIITTRDEH-L 155 (352)
Q Consensus 87 ~~~----~~~~~~~~~~~~~~~~~~~~~---~-l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~iiitsr~~~-~ 155 (352)
... +......+...+.+..+.+.. . ..++.-++|||+++.. .....++..+.....++.+|+++.+.. +
T Consensus 82 ~~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kI 161 (702)
T PRK14960 82 NEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKL 161 (702)
T ss_pred hcCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhh
Confidence 100 000000111112221111111 1 1245669999999743 456777777665566778887776542 2
Q ss_pred h-hhcCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchhHHHH
Q 045677 156 L-KLHRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLAVDVL 214 (352)
Q Consensus 156 ~-~~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~ 214 (352)
. .....+..+++.+++.++....+...+..... ....+.+..|++.++|.+..+...
T Consensus 162 p~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI--~id~eAL~~IA~~S~GdLRdALnL 219 (702)
T PRK14960 162 PITVISRCLQFTLRPLAVDEITKHLGAILEKEQI--AADQDAIWQIAESAQGSLRDALSL 219 (702)
T ss_pred hHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 2 22345678999999999999999876633221 234577889999999988666543
No 27
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.15 E-value=4e-09 Score=95.71 Aligned_cols=196 Identities=12% Similarity=0.085 Sum_probs=117.8
Q ss_pred CCcCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHHHH
Q 045677 7 IPKELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQKQL 86 (352)
Q Consensus 7 ~~~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 86 (352)
.-..+||.+..++.|..++..+. -.+.++++|++|+||||+|+.+++.+........-.++. . ..+..+
T Consensus 16 ~f~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~--C--------~sC~~i 84 (484)
T PRK14956 16 FFRDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNE--C--------TSCLEI 84 (484)
T ss_pred CHHHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCC--C--------cHHHHH
Confidence 34568999999999999988532 245689999999999999999998864321100000000 0 001111
Q ss_pred HHH----Hhccc---CCCccchhhhHHHHHhh-hCCceEEEEEeCCC--ChhhhhhhhCCCCCCCCCceEEEEeCc-hhH
Q 045677 87 LSD----LLMLA---DNSIRNVYDGVNMIGSR-LRHKKVLLLIDDVA--DVEQLRGLFGKRDWFGLGSMIIITTRD-EHL 155 (352)
Q Consensus 87 ~~~----~~~~~---~~~~~~~~~~~~~~~~~-l~~~~~llvlDd~~--~~~~~~~l~~~~~~~~~~~~iiitsr~-~~~ 155 (352)
... +.... ....+.+.++.+.+... ..++.-++|||+++ +.+.+..++..+......+.+|++|.+ ..+
T Consensus 85 ~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI 164 (484)
T PRK14956 85 TKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKI 164 (484)
T ss_pred HccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhc
Confidence 110 00000 01111222222222211 23566799999997 445688888777665566666655553 333
Q ss_pred hhh-cCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchhHHHHH
Q 045677 156 LKL-HRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLAVDVLV 215 (352)
Q Consensus 156 ~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~ 215 (352)
... ...+..+.+.+++.++..+.+...+.... ....++.+..|++.++|.+.-...+.
T Consensus 165 ~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Eg--i~~e~eAL~~Ia~~S~Gd~RdAL~lL 223 (484)
T PRK14956 165 PETILSRCQDFIFKKVPLSVLQDYSEKLCKIEN--VQYDQEGLFWIAKKGDGSVRDMLSFM 223 (484)
T ss_pred cHHHHhhhheeeecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCChHHHHHHHH
Confidence 222 34456799999999999998888763222 22345778999999999986554443
No 28
>PRK08727 hypothetical protein; Validated
Probab=99.14 E-value=2.7e-09 Score=89.74 Aligned_cols=170 Identities=16% Similarity=0.122 Sum_probs=98.5
Q ss_pred ccccc-HHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHHHHHHH
Q 045677 11 LVGME-SRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQKQLLSD 89 (352)
Q Consensus 11 ~vGR~-~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 89 (352)
|++.. ..+..+..... +.....++|+|++|+|||+|+..+++...+......|+. .. +....+..
T Consensus 21 f~~~~~n~~~~~~~~~~--~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~-~~----------~~~~~~~~- 86 (233)
T PRK08727 21 YIAAPDGLLAQLQALAA--GQSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLP-LQ----------AAAGRLRD- 86 (233)
T ss_pred ccCCcHHHHHHHHHHHh--ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEe-HH----------HhhhhHHH-
Confidence 55444 44444444433 223467999999999999999999988766644445543 11 11111110
Q ss_pred HhcccCCCccchhhhHHHHHhhhCCceEEEEEeCCCCh----hhhhhhhCCCCC-CCCCceEEEEeCchh---------H
Q 045677 90 LLMLADNSIRNVYDGVNMIGSRLRHKKVLLLIDDVADV----EQLRGLFGKRDW-FGLGSMIIITTRDEH---------L 155 (352)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~----~~~~~l~~~~~~-~~~~~~iiitsr~~~---------~ 155 (352)
.+. .+ .+.-+|||||++.. ..-..++..+.. ...+..+|+|++... +
T Consensus 87 -----------------~~~-~l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL 147 (233)
T PRK08727 87 -----------------ALE-AL-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDL 147 (233)
T ss_pred -----------------HHH-HH-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHH
Confidence 000 11 12248999999532 122233332221 123567999888532 1
Q ss_pred hhhcCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchhHHHHH
Q 045677 156 LKLHRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLAVDVLV 215 (352)
Q Consensus 156 ~~~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~ 215 (352)
.+.......+++++++.++..+++++.+..... ...++.++.+++.++|-.-.+..+.
T Consensus 148 ~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l--~l~~e~~~~La~~~~rd~r~~l~~L 205 (233)
T PRK08727 148 RSRLAQCIRIGLPVLDDVARAAVLRERAQRRGL--ALDEAAIDWLLTHGERELAGLVALL 205 (233)
T ss_pred HHHHhcCceEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhCCCCHHHHHHHH
Confidence 122223568899999999999999986643222 2345778888888887766654433
No 29
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.14 E-value=1.5e-09 Score=91.34 Aligned_cols=172 Identities=17% Similarity=0.168 Sum_probs=98.0
Q ss_pred cCcccccHHH-HHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHHHHH
Q 045677 9 KELVGMESRL-EKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQKQLL 87 (352)
Q Consensus 9 ~~~vGR~~~l-~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 87 (352)
+.+.|+..+. ..+.++... ....+.++|+|++|+|||+||..+++..........++. ... ....+
T Consensus 19 ~f~~~~~~~~~~~l~~~~~~-~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~-~~~----------~~~~~- 85 (227)
T PRK08903 19 NFVAGENAELVARLRELAAG-PVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLD-AAS----------PLLAF- 85 (227)
T ss_pred ccccCCcHHHHHHHHHHHhc-cCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe-hHH----------hHHHH-
Confidence 3344665554 444444442 233467899999999999999999988644433333333 111 10000
Q ss_pred HHHhcccCCCccchhhhHHHHHhhhCCceEEEEEeCCCCh--hhhhhhhCCCCCC-CCCc-eEEEEeCchhHhh------
Q 045677 88 SDLLMLADNSIRNVYDGVNMIGSRLRHKKVLLLIDDVADV--EQLRGLFGKRDWF-GLGS-MIIITTRDEHLLK------ 157 (352)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~-~~~~-~iiitsr~~~~~~------ 157 (352)
.. ....-+|+|||++.. .....+...+... ..+. .+|+|++......
T Consensus 86 ----------------------~~-~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L 142 (227)
T PRK08903 86 ----------------------DF-DPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDL 142 (227)
T ss_pred ----------------------hh-cccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHH
Confidence 00 122347999999533 2222332322211 1233 3666665432111
Q ss_pred --hcCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchhHHHHHHhh
Q 045677 158 --LHRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLAVDVLVSFL 218 (352)
Q Consensus 158 --~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~~l 218 (352)
.......+++++++.++-..++.+...... ....++.++.+++.+.|++..+..+...+
T Consensus 143 ~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~--v~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 143 RTRLGWGLVYELKPLSDADKIAALKAAAAERG--LQLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHHhcCeEEEecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 122246899999999887777776442211 12345788889999999999887776654
No 30
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.14 E-value=7.8e-09 Score=95.95 Aligned_cols=201 Identities=16% Similarity=0.094 Sum_probs=115.9
Q ss_pred CCcCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCC--CcceeEeeeccc-cccCCCcHHHHH
Q 045677 7 IPKELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHE--FDGSSFLADVRE-RCDKEGSVISLQ 83 (352)
Q Consensus 7 ~~~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~l~ 83 (352)
.-+.++|.+..++.|..++..+. -.+.++++|++|+||||+|..+++.+... ....++.+.... ....... +
T Consensus 12 ~~~dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~--d-- 86 (504)
T PRK14963 12 TFDEVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHP--D-- 86 (504)
T ss_pred CHHHhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCC--c--
Confidence 33568999999999999888532 34667999999999999999999886421 112222221100 0000000 0
Q ss_pred HHHHHHHhcccCCCccchhhhHHHHHh-hhCCceEEEEEeCCCCh--hhhhhhhCCCCCCCCCceEEEEeCc-hhHhhh-
Q 045677 84 KQLLSDLLMLADNSIRNVYDGVNMIGS-RLRHKKVLLLIDDVADV--EQLRGLFGKRDWFGLGSMIIITTRD-EHLLKL- 158 (352)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~iiitsr~-~~~~~~- 158 (352)
+ ..+..........+.++...+.. -..+++-++|||+++.. ..+..++..+......+.+|+++.. ..+...
T Consensus 87 --v-~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I 163 (504)
T PRK14963 87 --V-LEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTI 163 (504)
T ss_pred --e-EEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHH
Confidence 0 00000000011111221111111 01245669999999743 4577777666554556666655543 333222
Q ss_pred cCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchhHHHHHHh
Q 045677 159 HRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLAVDVLVSF 217 (352)
Q Consensus 159 ~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~~ 217 (352)
......+++.+++.++...++...+...... ..++.+..|++.++|.+.-+......
T Consensus 164 ~SRc~~~~f~~ls~~el~~~L~~i~~~egi~--i~~~Al~~ia~~s~GdlR~aln~Lek 220 (504)
T PRK14963 164 LSRTQHFRFRRLTEEEIAGKLRRLLEAEGRE--AEPEALQLVARLADGAMRDAESLLER 220 (504)
T ss_pred hcceEEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 2345689999999999999998876332221 23477899999999999876544433
No 31
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.13 E-value=8e-09 Score=96.37 Aligned_cols=200 Identities=14% Similarity=0.084 Sum_probs=117.3
Q ss_pred CCcCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHHHH
Q 045677 7 IPKELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQKQL 86 (352)
Q Consensus 7 ~~~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 86 (352)
.-+++||.+..++.|.+++..+. -.+.++++|+.|+||||+|+.+++.+........ ... .....+. -..+..+
T Consensus 14 tFddVIGQe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~--~g~--~~~PCG~-C~sC~~I 87 (700)
T PRK12323 14 DFTTLVGQEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGE--GGI--TAQPCGQ-CRACTEI 87 (700)
T ss_pred cHHHHcCcHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCcccc--ccC--CCCCCcc-cHHHHHH
Confidence 33568999999999999998532 3467789999999999999999988643110000 000 0000000 0111111
Q ss_pred HHH----HhcccCCCccchhhhHHHHHhh----hCCceEEEEEeCCCC--hhhhhhhhCCCCCCCCCceEEEEeCc-hhH
Q 045677 87 LSD----LLMLADNSIRNVYDGVNMIGSR----LRHKKVLLLIDDVAD--VEQLRGLFGKRDWFGLGSMIIITTRD-EHL 155 (352)
Q Consensus 87 ~~~----~~~~~~~~~~~~~~~~~~~~~~----l~~~~~llvlDd~~~--~~~~~~l~~~~~~~~~~~~iiitsr~-~~~ 155 (352)
... +......+...+++..+.+... ..++.-++|||+++. ....+.|+..+.....++.+|++|.+ ..+
T Consensus 88 ~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kL 167 (700)
T PRK12323 88 DAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKI 167 (700)
T ss_pred HcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhh
Confidence 100 0000111111222222222211 134567999999974 45678888888766677776665554 333
Q ss_pred hhh-cCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchhHHHH
Q 045677 156 LKL-HRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLAVDVL 214 (352)
Q Consensus 156 ~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~ 214 (352)
... ...+..+.++.++.++..+.+.+.+..... ....+.++.|++.++|.|.-...+
T Consensus 168 lpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi--~~d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 168 PVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGI--AHEVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred hhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 333 244678999999999999988876532211 123466788999999999755444
No 32
>PRK04195 replication factor C large subunit; Provisional
Probab=99.13 E-value=6.1e-09 Score=97.16 Aligned_cols=218 Identities=15% Similarity=0.151 Sum_probs=124.8
Q ss_pred CCCCcCcccccHHHHHHHHHHhc--CCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHH
Q 045677 5 LEIPKELVGMESRLEKLKFLMCT--GSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISL 82 (352)
Q Consensus 5 ~~~~~~~vGR~~~l~~l~~~l~~--~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 82 (352)
|..-..++|++..++.|.+|+.. .+...+.++|+||+|+|||++|..+++.+... +...+..+ ... ...
T Consensus 10 P~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~~~----~ielnasd----~r~-~~~ 80 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYGWE----VIELNASD----QRT-ADV 80 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcCCC----EEEEcccc----ccc-HHH
Confidence 44446689999999999999875 22236889999999999999999999887422 12222111 111 122
Q ss_pred HHHHHHHHhcccCCCccchhhhHHHHHhhhCCceEEEEEeCCCChh------hhhhhhCCCCCCCCCceEEEEeCch-hH
Q 045677 83 QKQLLSDLLMLADNSIRNVYDGVNMIGSRLRHKKVLLLIDDVADVE------QLRGLFGKRDWFGLGSMIIITTRDE-HL 155 (352)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~~------~~~~l~~~~~~~~~~~~iiitsr~~-~~ 155 (352)
+..++........ .....+-+||||+++... .+..+...+. ..+..+|+++.+. ..
T Consensus 81 i~~~i~~~~~~~s---------------l~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~ 143 (482)
T PRK04195 81 IERVAGEAATSGS---------------LFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDP 143 (482)
T ss_pred HHHHHHHhhccCc---------------ccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCcccc
Confidence 2232222111100 001356799999996432 2444444433 2334455555432 11
Q ss_pred h--hhcCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchhHHHHHHhhcCC-ChhHHHHHHHH
Q 045677 156 L--KLHRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLAVDVLVSFLFGR-PVDQWRSTQER 232 (352)
Q Consensus 156 ~--~~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~~l~~~-~~~~~~~~~~~ 232 (352)
. ..-.....+.+++++.++....+...+...... ..++.++.|++.++|....+......+... ..-........
T Consensus 144 ~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~--i~~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~ 221 (482)
T PRK04195 144 SLRELRNACLMIEFKRLSTRSIVPVLKRICRKEGIE--CDDEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTL 221 (482)
T ss_pred chhhHhccceEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHh
Confidence 1 222345689999999999999888776332222 235778999999999888776555544332 21112211112
Q ss_pred HccCCchhHHHHHHhhhc
Q 045677 233 LKRDPENKILGILQISFD 250 (352)
Q Consensus 233 ~~~~~~~~~~~~l~~~~~ 250 (352)
...+...+++.++...+.
T Consensus 222 ~~~d~~~~if~~l~~i~~ 239 (482)
T PRK04195 222 GRRDREESIFDALDAVFK 239 (482)
T ss_pred hcCCCCCCHHHHHHHHHC
Confidence 223334555555555444
No 33
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.12 E-value=1.6e-08 Score=97.56 Aligned_cols=194 Identities=18% Similarity=0.099 Sum_probs=119.4
Q ss_pred CCCcCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCC-Ccc--eeEeeeccccccCCCcHHHH
Q 045677 6 EIPKELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHE-FDG--SSFLADVRERCDKEGSVISL 82 (352)
Q Consensus 6 ~~~~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~l 82 (352)
..-..+||.+..++.|.+++..+ .-.+.++++|++|+||||+|+.+++.+... ... .+..+ ..
T Consensus 13 ~tFddIIGQe~Iv~~LknaI~~~-rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C-------------~s 78 (944)
T PRK14949 13 ATFEQMVGQSHVLHALTNALTQQ-RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVC-------------SS 78 (944)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhC-CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCc-------------hH
Confidence 33466899999999999988843 234667899999999999999999886432 100 01111 00
Q ss_pred HHHHHHHH----hcccC---CCccchhhhHHHHHhh-hCCceEEEEEeCCC--ChhhhhhhhCCCCCCCCCceEEEEeCc
Q 045677 83 QKQLLSDL----LMLAD---NSIRNVYDGVNMIGSR-LRHKKVLLLIDDVA--DVEQLRGLFGKRDWFGLGSMIIITTRD 152 (352)
Q Consensus 83 ~~~~~~~~----~~~~~---~~~~~~~~~~~~~~~~-l~~~~~llvlDd~~--~~~~~~~l~~~~~~~~~~~~iiitsr~ 152 (352)
+..+.... ..... .....+..+...+... ..++.-++|||+++ +......|+..+.....++++|++|.+
T Consensus 79 C~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe 158 (944)
T PRK14949 79 CVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTD 158 (944)
T ss_pred HHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCC
Confidence 00000000 00000 1111222222222211 23567799999996 456678888887766677777766554
Q ss_pred h-hHhhh-cCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchhHHHHH
Q 045677 153 E-HLLKL-HRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLAVDVLV 215 (352)
Q Consensus 153 ~-~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~ 215 (352)
. .+... ...+..+++++++.++....+...+.... .....+.++.|++.++|.|.-+..++
T Consensus 159 ~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~Eg--I~~edeAL~lIA~~S~Gd~R~ALnLL 221 (944)
T PRK14949 159 PQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQ--LPFEAEALTLLAKAANGSMRDALSLT 221 (944)
T ss_pred chhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3 33322 33467899999999999999887653221 12334778899999999997665544
No 34
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.12 E-value=2.9e-08 Score=89.52 Aligned_cols=195 Identities=13% Similarity=0.120 Sum_probs=114.7
Q ss_pred CCCCcCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCC-C----cceeEeeeccccccCCCcH
Q 045677 5 LEIPKELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHE-F----DGSSFLADVRERCDKEGSV 79 (352)
Q Consensus 5 ~~~~~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~ 79 (352)
|..-..++|.+..++.|.+++..+. -.+.++++|++|+|||++|..++..+... . .++.+..
T Consensus 10 p~~~~~iig~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~------------ 76 (355)
T TIGR02397 10 PQTFEDVIGQEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECES------------ 76 (355)
T ss_pred CCcHhhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH------------
Confidence 4445678999999999999998532 34678899999999999999999876322 1 0110000
Q ss_pred HHHHHHHHHH----HhcccCC---CccchhhhHHHHHhh-hCCceEEEEEeCCCCh--hhhhhhhCCCCCCCCCceEEEE
Q 045677 80 ISLQKQLLSD----LLMLADN---SIRNVYDGVNMIGSR-LRHKKVLLLIDDVADV--EQLRGLFGKRDWFGLGSMIIIT 149 (352)
Q Consensus 80 ~~l~~~~~~~----~~~~~~~---~~~~~~~~~~~~~~~-l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~iiit 149 (352)
+..+... +...... .......+.+.+... ..+.+-++|||+++.. .....++..+...+..+.+|++
T Consensus 77 ---c~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~ 153 (355)
T TIGR02397 77 ---CKEINSGSSLDVIEIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILA 153 (355)
T ss_pred ---HHHHhcCCCCCEEEeeccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEE
Confidence 0000000 0000000 000111111111110 1234568999999644 4466666666544566666666
Q ss_pred eCchh-Hhhh-cCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchhHHHHHHh
Q 045677 150 TRDEH-LLKL-HRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLAVDVLVSF 217 (352)
Q Consensus 150 sr~~~-~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~~ 217 (352)
+.+.. +... ......+++++++.++..+++...+..... ...++.+..+++.++|.|..+......
T Consensus 154 ~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~--~i~~~a~~~l~~~~~g~~~~a~~~lek 221 (355)
T TIGR02397 154 TTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGI--KIEDEALELIARAADGSLRDALSLLDQ 221 (355)
T ss_pred eCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCChHHHHHHHHH
Confidence 64432 2222 234567899999999999998876533221 123477888999999999877655443
No 35
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=99.11 E-value=5e-10 Score=91.08 Aligned_cols=50 Identities=32% Similarity=0.500 Sum_probs=35.6
Q ss_pred CcccccHHHHHHHHHHhc-CCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCC
Q 045677 10 ELVGMESRLEKLKFLMCT-GSNDVRTIGIWGMGGLGKTTLARVVYDLMSHE 59 (352)
Q Consensus 10 ~~vGR~~~l~~l~~~l~~-~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~ 59 (352)
.||||+.++++|...+.. .....+.++|+|++|+|||+|+.+++..+..+
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 489999999999999943 34456899999999999999999999987766
No 36
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.11 E-value=4.2e-09 Score=87.28 Aligned_cols=258 Identities=20% Similarity=0.227 Sum_probs=154.9
Q ss_pred CCcCcccccHHHHHHHHHHhc---CCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHH
Q 045677 7 IPKELVGMESRLEKLKFLMCT---GSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQ 83 (352)
Q Consensus 7 ~~~~~vGR~~~l~~l~~~l~~---~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 83 (352)
.=..|||.+...+.|.-.+.. .++....++++||+|.||||||..+++++..+.. .. .+..-... .-+
T Consensus 24 ~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k----~t-sGp~leK~----gDl 94 (332)
T COG2255 24 TLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLK----IT-SGPALEKP----GDL 94 (332)
T ss_pred cHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeE----ec-ccccccCh----hhH
Confidence 336799999888888777764 3445677999999999999999999999875531 11 11111111 111
Q ss_pred HHHHHHHhcccCCCccchhhhHHHHHhhhCCceEEEEEeCCCChh-hhhhhh-CCCCCC--------CC-----------
Q 045677 84 KQLLSDLLMLADNSIRNVYDGVNMIGSRLRHKKVLLLIDDVADVE-QLRGLF-GKRDWF--------GL----------- 142 (352)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~~-~~~~l~-~~~~~~--------~~----------- 142 (352)
..++..+. .+=++++|+++-.. ..++++ +...++ ++
T Consensus 95 aaiLt~Le-----------------------~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLpp 151 (332)
T COG2255 95 AAILTNLE-----------------------EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPP 151 (332)
T ss_pred HHHHhcCC-----------------------cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCC
Confidence 22222211 12277788885321 122221 111100 11
Q ss_pred CceEEEEeCchhHhhhc--CcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchhHHHHHHhhcC
Q 045677 143 GSMIIITTRDEHLLKLH--RVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLAVDVLVSFLFG 220 (352)
Q Consensus 143 ~~~iiitsr~~~~~~~~--~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~~l~~ 220 (352)
-..|=-|||...+.... ++.-..++...+.+|...++.+.+.-- ..+..++.+.+|++++.|-|.--.-+.+..+.
T Consensus 152 FTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l--~i~i~~~~a~eIA~rSRGTPRIAnRLLrRVRD 229 (332)
T COG2255 152 FTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKIL--GIEIDEEAALEIARRSRGTPRIANRLLRRVRD 229 (332)
T ss_pred eeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHh--CCCCChHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence 22233588866544433 455678999999999999988776221 22234577899999999999755444333322
Q ss_pred CChhHHHHHHHHHccC--Cch----hHHHHHHhhhccCcHhhhhhhhhhccCC--CCCCHHHHHHHHHhcCCCchhchHH
Q 045677 221 RPVDQWRSTQERLKRD--PEN----KILGILQISFDGLKEAEKNIFLDVACFY--KWENRDYVSKILDSCGFDPIIGISV 292 (352)
Q Consensus 221 ~~~~~~~~~~~~~~~~--~~~----~~~~~l~~~~~~L~~~~~~~l~~ls~~~--~~~~~~~l~~~~~~~~~~~~~~l~~ 292 (352)
....... ... .....+...=..|....++.|..+.-.. +++..+.++..++-+....++.++.
T Consensus 230 ---------fa~V~~~~~I~~~ia~~aL~~L~Vd~~GLd~~D~k~L~~li~~f~GgPVGl~tia~~lge~~~TiEdv~EP 300 (332)
T COG2255 230 ---------FAQVKGDGDIDRDIADKALKMLDVDELGLDEIDRKYLRALIEQFGGGPVGLDTIAAALGEDRDTIEDVIEP 300 (332)
T ss_pred ---------HHHHhcCCcccHHHHHHHHHHhCcccccccHHHHHHHHHHHHHhCCCCccHHHHHHHhcCchhHHHHHHhH
Confidence 1111111 111 1122233333456666777776665543 5678999988887777777777774
Q ss_pred -HhhccceeecCCCce
Q 045677 293 -LIEKSLLTVRENDRL 307 (352)
Q Consensus 293 -L~~~~li~~~~~~~~ 307 (352)
|++.|+++++..|+.
T Consensus 301 yLiq~gfi~RTpRGR~ 316 (332)
T COG2255 301 YLIQQGFIQRTPRGRI 316 (332)
T ss_pred HHHHhchhhhCCCcce
Confidence 999999999988864
No 37
>PTZ00202 tuzin; Provisional
Probab=99.10 E-value=1e-08 Score=90.77 Aligned_cols=169 Identities=14% Similarity=0.083 Sum_probs=103.8
Q ss_pred CCCCCCcCcccccHHHHHHHHHHhcCC-CCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHH
Q 045677 3 SELEIPKELVGMESRLEKLKFLMCTGS-NDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVIS 81 (352)
Q Consensus 3 ~~~~~~~~~vGR~~~l~~l~~~l~~~~-~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (352)
..|+.+..|+||+.|++.|...|...+ +..+++.|+|++|+|||||++.+..... ...++.+.+ + ..+
T Consensus 256 ~lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~~qL~vNpr------g-~eE 324 (550)
T PTZ00202 256 SAPAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----MPAVFVDVR------G-TED 324 (550)
T ss_pred CCCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----ceEEEECCC------C-HHH
Confidence 357778999999999999999997532 3356999999999999999999986654 235555443 1 278
Q ss_pred HHHHHHHHHhcccCCCcc-chhhhHHHHHhhh-C-CceEEEEEeCCC--Chhh-hhhhhCCCCCCCCCceEEEEeCchhH
Q 045677 82 LQKQLLSDLLMLADNSIR-NVYDGVNMIGSRL-R-HKKVLLLIDDVA--DVEQ-LRGLFGKRDWFGLGSMIIITTRDEHL 155 (352)
Q Consensus 82 l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l-~-~~~~llvlDd~~--~~~~-~~~l~~~~~~~~~~~~iiitsr~~~~ 155 (352)
++..++..++........ -...+.+.+.+.. . +++.+|||-=-+ +..- +.+.... .-...-|+|++----+.+
T Consensus 325 lLr~LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v~l-a~drr~ch~v~evplesl 403 (550)
T PTZ00202 325 TLRSVVKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVVAL-ACDRRLCHVVIEVPLESL 403 (550)
T ss_pred HHHHHHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHHHH-HccchhheeeeeehHhhc
Confidence 888898887753222211 1222233333222 2 566666654332 2111 1111111 101345677775443332
Q ss_pred hhh---cCcccEEecCCCCHhHHHHHHHhhh
Q 045677 156 LKL---HRVEEVYKLEALNFDEAFRLFCLKA 183 (352)
Q Consensus 156 ~~~---~~~~~~~~l~~l~~~e~~~ll~~~~ 183 (352)
... .+....+.+++++.+++.++.+...
T Consensus 404 t~~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 404 TIANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred chhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 221 2345678999999999999887665
No 38
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.10 E-value=4.7e-09 Score=96.42 Aligned_cols=191 Identities=14% Similarity=0.104 Sum_probs=111.3
Q ss_pred cCcccccHHH--HHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCC-CcceeEeeeccccccCCCcHHHHHHH
Q 045677 9 KELVGMESRL--EKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHE-FDGSSFLADVRERCDKEGSVISLQKQ 85 (352)
Q Consensus 9 ~~~vGR~~~l--~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~ 85 (352)
+..+|..... ..+..+....+.....++|+|++|+|||+|++.+++.+... ....+.+... ..+...
T Consensus 116 nFv~g~~n~~A~~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~----------~~f~~~ 185 (450)
T PRK14087 116 NFVIGSSNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSG----------DEFARK 185 (450)
T ss_pred cccCCCcHHHHHHHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH----------HHHHHH
Confidence 3456776553 33333433222334668999999999999999999876542 2222322211 234444
Q ss_pred HHHHHhcccCCCccchhhhHHHHHhhhCCceEEEEEeCCCCh----hhhhhhhCCCCC-CCCCceEEEEeCchh------
Q 045677 86 LLSDLLMLADNSIRNVYDGVNMIGSRLRHKKVLLLIDDVADV----EQLRGLFGKRDW-FGLGSMIIITTRDEH------ 154 (352)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~----~~~~~l~~~~~~-~~~~~~iiitsr~~~------ 154 (352)
+...+.... .....+...+. ..-+|||||+... ...+.++..++. ...+..||+|+...+
T Consensus 186 ~~~~l~~~~--------~~~~~~~~~~~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l 256 (450)
T PRK14087 186 AVDILQKTH--------KEIEQFKNEIC-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGF 256 (450)
T ss_pred HHHHHHHhh--------hHHHHHHHHhc-cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhc
Confidence 444332210 11222333333 3348899999532 223344443332 133457888865331
Q ss_pred ---HhhhcCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchhHHHHHHhh
Q 045677 155 ---LLKLHRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLAVDVLVSFL 218 (352)
Q Consensus 155 ---~~~~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~~l 218 (352)
+.+.+...-...+++++.++..+++++.+..........++.++.|++.+.|.|..+..+...+
T Consensus 257 ~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l 323 (450)
T PRK14087 257 DNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSRL 323 (450)
T ss_pred cHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 2222334457889999999999999987743221113456889999999999999998766554
No 39
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.09 E-value=7.5e-09 Score=87.18 Aligned_cols=177 Identities=16% Similarity=0.197 Sum_probs=101.2
Q ss_pred CCcCcccccH-HHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHHH
Q 045677 7 IPKELVGMES-RLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQKQ 85 (352)
Q Consensus 7 ~~~~~vGR~~-~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 85 (352)
..+.++|... .+..+.++... ...+.+.|+|++|+|||+|+..+++..........|+. +... ......
T Consensus 21 fd~f~~~~n~~a~~~l~~~~~~--~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~-~~~~-------~~~~~~ 90 (235)
T PRK08084 21 FASFYPGDNDSLLAALQNALRQ--EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVP-LDKR-------AWFVPE 90 (235)
T ss_pred ccccccCccHHHHHHHHHHHhC--CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE-HHHH-------hhhhHH
Confidence 3334457443 33455555442 23467899999999999999999988765533344443 2110 000001
Q ss_pred HHHHHhcccCCCccchhhhHHHHHhhhCCceEEEEEeCCCCh---hhhh-hhhCCCCCC--CCCceEEEEeCchh-----
Q 045677 86 LLSDLLMLADNSIRNVYDGVNMIGSRLRHKKVLLLIDDVADV---EQLR-GLFGKRDWF--GLGSMIIITTRDEH----- 154 (352)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~---~~~~-~l~~~~~~~--~~~~~iiitsr~~~----- 154 (352)
+ .+.+ .. --+|+|||++.. ..|+ .++..+... ..+.++|+||+...
T Consensus 91 ~------------------~~~~----~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~ 147 (235)
T PRK08084 91 V------------------LEGM----EQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNL 147 (235)
T ss_pred H------------------HHHh----hh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCc
Confidence 1 1111 11 138999999532 2222 222222211 12347888887542
Q ss_pred ----HhhhcCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchhHHHHHHhh
Q 045677 155 ----LLKLHRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLAVDVLVSFL 218 (352)
Q Consensus 155 ----~~~~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~~l 218 (352)
+.+.+.....+++.+++.++-.+++++.+.... ....++.++-+++.+.|..-.+..+...+
T Consensus 148 ~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~--~~l~~~v~~~L~~~~~~d~r~l~~~l~~l 213 (235)
T PRK08084 148 GLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRG--FELPEDVGRFLLKRLDREMRTLFMTLDQL 213 (235)
T ss_pred ccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 222233446899999999999999887553322 22345788889999998887776555443
No 40
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.08 E-value=5.4e-09 Score=98.55 Aligned_cols=196 Identities=16% Similarity=0.072 Sum_probs=114.8
Q ss_pred CCcCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHHHH
Q 045677 7 IPKELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQKQL 86 (352)
Q Consensus 7 ~~~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 86 (352)
.-+.+||.+..++.|..++..+ .-.+.++++|++|+||||+|+.+++.+....... ... ++. -..+..+
T Consensus 14 tFddIIGQe~vv~~L~~ai~~~-rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~-~~p-Cg~--------C~sCr~i 82 (709)
T PRK08691 14 TFADLVGQEHVVKALQNALDEG-RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQH-GEP-CGV--------CQSCTQI 82 (709)
T ss_pred CHHHHcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCC-CCC-Ccc--------cHHHHHH
Confidence 3356899999999999999853 2356789999999999999999998753221100 000 000 0000011
Q ss_pred HHH----HhcccCCCcc---chhhhHHHHHhh-hCCceEEEEEeCCCChh--hhhhhhCCCCCCCCCceEEEEeCch-hH
Q 045677 87 LSD----LLMLADNSIR---NVYDGVNMIGSR-LRHKKVLLLIDDVADVE--QLRGLFGKRDWFGLGSMIIITTRDE-HL 155 (352)
Q Consensus 87 ~~~----~~~~~~~~~~---~~~~~~~~~~~~-l~~~~~llvlDd~~~~~--~~~~l~~~~~~~~~~~~iiitsr~~-~~ 155 (352)
... +......... .+.+++...... ..++.-++|||+++... ....++..+......+++|++|.+. .+
T Consensus 83 ~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL 162 (709)
T PRK08691 83 DAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKV 162 (709)
T ss_pred hccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCcccc
Confidence 000 0000001111 122222211111 12456699999997543 4566666665555677777776543 22
Q ss_pred hhh-cCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchhHHHHH
Q 045677 156 LKL-HRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLAVDVLV 215 (352)
Q Consensus 156 ~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~ 215 (352)
... ...+..+.+.+++.++....+.+.+..... ...++.+..|++.++|.+..+....
T Consensus 163 ~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi--~id~eAL~~Ia~~A~GslRdAlnLL 221 (709)
T PRK08691 163 PVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKI--AYEPPALQLLGRAAAGSMRDALSLL 221 (709)
T ss_pred chHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCC--CcCHHHHHHHHHHhCCCHHHHHHHH
Confidence 211 234457888999999999999877643221 2345778999999999997766544
No 41
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.08 E-value=1.2e-08 Score=90.93 Aligned_cols=200 Identities=14% Similarity=0.103 Sum_probs=114.9
Q ss_pred CCCCcCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHh-cCCC-cceeEeeeccccccCCCcHHHH
Q 045677 5 LEIPKELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLM-SHEF-DGSSFLADVRERCDKEGSVISL 82 (352)
Q Consensus 5 ~~~~~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~l 82 (352)
|...+.++|.+...+.|.+.+..+ .-.+.++++|+.|+||+++|..+++.+ ++.. .......... ....... -..
T Consensus 15 P~~~~~iiGq~~~~~~L~~~~~~~-rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~-~l~~~~~-c~~ 91 (365)
T PRK07471 15 PRETTALFGHAAAEAALLDAYRSG-RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPT-SLAIDPD-HPV 91 (365)
T ss_pred CCchhhccChHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccc-cccCCCC-ChH
Confidence 334467899999999999988853 234678899999999999999999875 3221 1100000000 0000000 012
Q ss_pred HHHHHHHHhc------c---cCC----CccchhhhHHHHHhhh-----CCceEEEEEeCCC--ChhhhhhhhCCCCCCCC
Q 045677 83 QKQLLSDLLM------L---ADN----SIRNVYDGVNMIGSRL-----RHKKVLLLIDDVA--DVEQLRGLFGKRDWFGL 142 (352)
Q Consensus 83 ~~~~~~~~~~------~---~~~----~~~~~~~~~~~~~~~l-----~~~~~llvlDd~~--~~~~~~~l~~~~~~~~~ 142 (352)
++.+...... . ... ..-.+++ +..+...+ .+.+.++|||+++ +......++..+.....
T Consensus 92 c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~ 170 (365)
T PRK07471 92 ARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPA 170 (365)
T ss_pred HHHHHccCCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCC
Confidence 2222111000 0 000 0001111 22333332 2467799999996 45556777776665556
Q ss_pred CceEEEEeCch-hHhhh-cCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchhHHHH
Q 045677 143 GSMIIITTRDE-HLLKL-HRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLAVDVL 214 (352)
Q Consensus 143 ~~~iiitsr~~-~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~ 214 (352)
++.+|++|.+. .+.+. ......+.+.+++.++..+++...... .. .+....++..++|+|.....+
T Consensus 171 ~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~--~~----~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 171 RSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD--LP----DDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred CeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc--CC----HHHHHHHHHHcCCCHHHHHHH
Confidence 66666666544 33333 345678999999999999999876421 11 122367899999999865443
No 42
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.07 E-value=6.7e-09 Score=86.30 Aligned_cols=194 Identities=18% Similarity=0.180 Sum_probs=106.3
Q ss_pred CCCCCCCcCcccccHHHH--HHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCC-cceeEeeeccccccCCCc
Q 045677 2 NSELEIPKELVGMESRLE--KLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEF-DGSSFLADVRERCDKEGS 78 (352)
Q Consensus 2 ~~~~~~~~~~vGR~~~l~--~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 78 (352)
|+..+....++|...+.. .........+.....++|+|++|+|||.|++.+++.+.+.+ ...+.+...
T Consensus 2 n~~~tFdnfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~--------- 72 (219)
T PF00308_consen 2 NPKYTFDNFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSA--------- 72 (219)
T ss_dssp -TT-SCCCS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEH---------
T ss_pred CCCCccccCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecH---------
Confidence 445556666678755543 33333343333456689999999999999999999875432 223333222
Q ss_pred HHHHHHHHHHHHhcccCCCccchhhhHHHHHhhhCCceEEEEEeCCCCh---hhh-hhhhCCCCC-CCCCceEEEEeCch
Q 045677 79 VISLQKQLLSDLLMLADNSIRNVYDGVNMIGSRLRHKKVLLLIDDVADV---EQL-RGLFGKRDW-FGLGSMIIITTRDE 153 (352)
Q Consensus 79 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~---~~~-~~l~~~~~~-~~~~~~iiitsr~~ 153 (352)
..+...+...+.. .. ...+...+. .-=+|+|||++.. ..+ +.++..+.. ...+.++|+|+...
T Consensus 73 -~~f~~~~~~~~~~------~~----~~~~~~~~~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~ 140 (219)
T PF00308_consen 73 -EEFIREFADALRD------GE----IEEFKDRLR-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRP 140 (219)
T ss_dssp -HHHHHHHHHHHHT------TS----HHHHHHHHC-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-
T ss_pred -HHHHHHHHHHHHc------cc----chhhhhhhh-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCC
Confidence 2333344333222 11 112223333 2338999999543 222 223222221 13467899998643
Q ss_pred h---------HhhhcCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchhHHHHHHhh
Q 045677 154 H---------LLKLHRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLAVDVLVSFL 218 (352)
Q Consensus 154 ~---------~~~~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~~l 218 (352)
+ +.+.....-.++|.+.+.++..+++++.+...... ..+++++-+++.+.+..-.|..+...+
T Consensus 141 P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~--l~~~v~~~l~~~~~~~~r~L~~~l~~l 212 (219)
T PF00308_consen 141 PSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIE--LPEEVIEYLARRFRRDVRELEGALNRL 212 (219)
T ss_dssp TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT----S-HHHHHHHHHHTTSSHHHHHHHHHHH
T ss_pred CccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCC--CcHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 2 22223345689999999999999999877443332 445788888888888877776554443
No 43
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.07 E-value=4.4e-09 Score=93.27 Aligned_cols=200 Identities=16% Similarity=0.126 Sum_probs=115.9
Q ss_pred CCCCcCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHH
Q 045677 5 LEIPKELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQK 84 (352)
Q Consensus 5 ~~~~~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (352)
|...+.++|-+...+.|...+..+. .++.++|+|+.|+|||++|..+++.+-.......--... ...... ...+.
T Consensus 19 P~~~~~l~Gh~~a~~~L~~a~~~gr-l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~---~~~~~~-c~~c~ 93 (351)
T PRK09112 19 PSENTRLFGHEEAEAFLAQAYREGK-LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETL---ADPDPA-SPVWR 93 (351)
T ss_pred CCchhhccCcHHHHHHHHHHHHcCC-CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcccc---CCCCCC-CHHHH
Confidence 4455678999999999999988532 346789999999999999999998864421100000000 000000 11222
Q ss_pred HHHHHHh-------ccc-CC-----CccchhhhHHHHHhhh-----CCceEEEEEeCCCC--hhhhhhhhCCCCCCCCCc
Q 045677 85 QLLSDLL-------MLA-DN-----SIRNVYDGVNMIGSRL-----RHKKVLLLIDDVAD--VEQLRGLFGKRDWFGLGS 144 (352)
Q Consensus 85 ~~~~~~~-------~~~-~~-----~~~~~~~~~~~~~~~l-----~~~~~llvlDd~~~--~~~~~~l~~~~~~~~~~~ 144 (352)
.+..... ... .. ..-.+++ +..+.+.+ .++.-++|||+++. ....+.++..+...+.+.
T Consensus 94 ~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~-iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~ 172 (351)
T PRK09112 94 QIAQGAHPNLLHITRPFDEKTGKFKTAITVDE-IRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARA 172 (351)
T ss_pred HHHcCCCCCEEEeecccccccccccccCCHHH-HHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCc
Confidence 2221100 000 00 0001111 22233332 24667999999964 445666666665545556
Q ss_pred eEEEEe-CchhHhhh-cCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchhHHHH
Q 045677 145 MIIITT-RDEHLLKL-HRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLAVDVL 214 (352)
Q Consensus 145 ~iiits-r~~~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~ 214 (352)
.+|+.| +...+.+. ......+++.+++.++..+++.+..... . ..++....+++.++|.|.....+
T Consensus 173 ~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~--~--~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 173 LFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQ--G--SDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred eEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhccc--C--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 655544 43333332 2345689999999999999998854211 1 22456788999999999865443
No 44
>PRK05642 DNA replication initiation factor; Validated
Probab=99.07 E-value=7.7e-09 Score=86.98 Aligned_cols=181 Identities=14% Similarity=0.144 Sum_probs=102.8
Q ss_pred CCCCcCcccccHHHHHHHHHH-hcC-CCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHH
Q 045677 5 LEIPKELVGMESRLEKLKFLM-CTG-SNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISL 82 (352)
Q Consensus 5 ~~~~~~~vGR~~~l~~l~~~l-~~~-~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 82 (352)
....+.++|.........+.+ ... ......++|+|++|+|||+|+..+++.+.+.....+|+. .. ++
T Consensus 16 ~tfdnF~~~~~~~a~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~-~~----------~~ 84 (234)
T PRK05642 16 ATFANYYPGANAAALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLP-LA----------EL 84 (234)
T ss_pred ccccccCcCChHHHHHHHHHHhhccccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEee-HH----------HH
Confidence 334444557665544433322 211 112367899999999999999999987655444445543 11 11
Q ss_pred HHHHHHHHhcccCCCccchhhhHHHHHhhhCCceEEEEEeCCCCh---hhhh-hhhCCCCC-CCCCceEEEEeCchhH--
Q 045677 83 QKQLLSDLLMLADNSIRNVYDGVNMIGSRLRHKKVLLLIDDVADV---EQLR-GLFGKRDW-FGLGSMIIITTRDEHL-- 155 (352)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~---~~~~-~l~~~~~~-~~~~~~iiitsr~~~~-- 155 (352)
... .. .+.+.+.+-. +|+|||+... ..+. .++..++. ...+..+|+|++..+.
T Consensus 85 ~~~---------------~~----~~~~~~~~~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l 144 (234)
T PRK05642 85 LDR---------------GP----ELLDNLEQYE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPREL 144 (234)
T ss_pred Hhh---------------hH----HHHHhhhhCC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHc
Confidence 110 01 1222222222 7889999522 2332 23333322 1346678888874321
Q ss_pred -------hhhcCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchhHHHHHHhh
Q 045677 156 -------LKLHRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLAVDVLVSFL 218 (352)
Q Consensus 156 -------~~~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~~l 218 (352)
.+.......+++++++.++...+++..+..... ...++..+-+++.+.|..-.+..+...+
T Consensus 145 ~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~~--~l~~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 145 PIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRGL--HLTDEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred CccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 111223467899999999999999855533221 2335778888888888877776655544
No 45
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.07 E-value=5.3e-08 Score=91.94 Aligned_cols=198 Identities=15% Similarity=0.128 Sum_probs=116.9
Q ss_pred CCcCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCC-c--ceeEeeeccccccCCCcHHHHH
Q 045677 7 IPKELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEF-D--GSSFLADVRERCDKEGSVISLQ 83 (352)
Q Consensus 7 ~~~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~l~ 83 (352)
.=+++||-+..++.|.+++..+ .-.+.++++|+.|+||||+|+.+++.+-... . ...-. ...+. -..+
T Consensus 14 ~f~dviGQe~vv~~L~~~l~~~-rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~-------~pCg~-C~~C 84 (618)
T PRK14951 14 SFSEMVGQEHVVQALTNALTQQ-RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA-------TPCGV-CQAC 84 (618)
T ss_pred CHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC-------CCCCc-cHHH
Confidence 3356899999999999998853 2346778999999999999999988753210 0 00000 00000 0111
Q ss_pred HHHHHH----HhcccCCCccchhhhHHHHHhh----hCCceEEEEEeCCCC--hhhhhhhhCCCCCCCCCceEEEEeCc-
Q 045677 84 KQLLSD----LLMLADNSIRNVYDGVNMIGSR----LRHKKVLLLIDDVAD--VEQLRGLFGKRDWFGLGSMIIITTRD- 152 (352)
Q Consensus 84 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~----l~~~~~llvlDd~~~--~~~~~~l~~~~~~~~~~~~iiitsr~- 152 (352)
..+... +..........+++..+.+... ..++.-++|||+++. ......++..+......+.+|++|.+
T Consensus 85 ~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~ 164 (618)
T PRK14951 85 RDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDP 164 (618)
T ss_pred HHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCc
Confidence 111100 0000011111222222222111 123456899999974 45677888887766677777766543
Q ss_pred hhHh-hhcCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchhHHHHH
Q 045677 153 EHLL-KLHRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLAVDVLV 215 (352)
Q Consensus 153 ~~~~-~~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~ 215 (352)
..+. ........+++++++.++....+...+...... ...+.+..|++.++|.+..+....
T Consensus 165 ~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~--ie~~AL~~La~~s~GslR~al~lL 226 (618)
T PRK14951 165 QKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVP--AEPQALRLLARAARGSMRDALSLT 226 (618)
T ss_pred hhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3332 223456789999999999999998765322221 234678889999999887665543
No 46
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.07 E-value=2.9e-08 Score=91.83 Aligned_cols=196 Identities=18% Similarity=0.182 Sum_probs=115.3
Q ss_pred CCcCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCc--ce-eEeeeccccccCCCcHHHHH
Q 045677 7 IPKELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFD--GS-SFLADVRERCDKEGSVISLQ 83 (352)
Q Consensus 7 ~~~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~l~ 83 (352)
.=..++|.+..++.|...+..+ .-.+.++++|++|+||||+|+.+++.+..... .. .+.. +. . -..+
T Consensus 19 ~f~dliGq~~vv~~L~~ai~~~-ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~-C~-~-------C~~C 88 (507)
T PRK06645 19 NFAELQGQEVLVKVLSYTILND-RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKT-CE-Q-------CTNC 88 (507)
T ss_pred CHHHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCC-CC-C-------ChHH
Confidence 3356799999999999877743 23467899999999999999999988632210 00 0000 00 0 0001
Q ss_pred HHHHHH----HhcccCCCccchhhhHHHHHhh----hCCceEEEEEeCCCC--hhhhhhhhCCCCCCCCCceEEE-EeCc
Q 045677 84 KQLLSD----LLMLADNSIRNVYDGVNMIGSR----LRHKKVLLLIDDVAD--VEQLRGLFGKRDWFGLGSMIII-TTRD 152 (352)
Q Consensus 84 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~----l~~~~~llvlDd~~~--~~~~~~l~~~~~~~~~~~~iii-tsr~ 152 (352)
..+... +......+.....+....+... ..+++-++|||+++. ...+..++..+...+..+.+|+ |+..
T Consensus 89 ~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~ 168 (507)
T PRK06645 89 ISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEV 168 (507)
T ss_pred HHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCCh
Confidence 111100 0000011111222222222111 134567999999975 3457777777665556666655 4444
Q ss_pred hhHhhh-cCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchhHHHH
Q 045677 153 EHLLKL-HRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLAVDVL 214 (352)
Q Consensus 153 ~~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~ 214 (352)
..+... ......+++.+++.++....+...+..... ...++.+..|++.++|.+.-+...
T Consensus 169 ~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi--~ie~eAL~~Ia~~s~GslR~al~~ 229 (507)
T PRK06645 169 QKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENL--KTDIEALRIIAYKSEGSARDAVSI 229 (507)
T ss_pred HHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 444333 234567999999999999999887743221 233467888999999998766443
No 47
>COG3903 Predicted ATPase [General function prediction only]
Probab=99.07 E-value=3.3e-10 Score=98.78 Aligned_cols=284 Identities=18% Similarity=0.217 Sum_probs=185.2
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHHh
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQKQLLSDLLMLADNSIRNVYDGVNMIGS 110 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (352)
..+.+.++|++||||||++-++.. +...|...+++++....+++... ...+...+.-.. .+.......+..
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~~~~~~~v~~vdl~pitD~~~v----~~~~ag~~gl~~----~~g~~~~~~~~~ 83 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AASEYADGVAFVDLAPITDPALV----FPTLAGALGLHV----QPGDSAVDTLVR 83 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-HhhhcccceeeeeccccCchhHh----HHHHHhhccccc----ccchHHHHHHHH
Confidence 358999999999999999999999 88889999999877776665332 222222222211 122334455667
Q ss_pred hhCCceEEEEEeCCCChhh-hhhhhCCCCCCCCCceEEEEeCchhHhhhcCcccEEecCCCCHh-HHHHHHHhhhcCC--
Q 045677 111 RLRHKKVLLLIDDVADVEQ-LRGLFGKRDWFGLGSMIIITTRDEHLLKLHRVEEVYKLEALNFD-EAFRLFCLKAFDT-- 186 (352)
Q Consensus 111 ~l~~~~~llvlDd~~~~~~-~~~l~~~~~~~~~~~~iiitsr~~~~~~~~~~~~~~~l~~l~~~-e~~~ll~~~~~~~-- 186 (352)
...+++.++++||++.... ...+...+........++.|+|.... ........+++++.. ++.++|...+...
T Consensus 84 ~~~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~ 160 (414)
T COG3903 84 RIGDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLVAL 160 (414)
T ss_pred HHhhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHhcc
Confidence 7788999999999965432 33333333323445678888886432 233456677777765 5677766554221
Q ss_pred -CCCchhHHHHHHHHHHHcCCCchhHHHHHHhhcCCChhHHHHHH----HHHccCC------chhHHHHHHhhhccCcHh
Q 045677 187 -YKPLEEYLELAKCFVKYASGLPLAVDVLVSFLFGRPVDQWRSTQ----ERLKRDP------ENKILGILQISFDGLKEA 255 (352)
Q Consensus 187 -~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~~l~~~~~~~~~~~~----~~~~~~~------~~~~~~~l~~~~~~L~~~ 255 (352)
.............|.++..|.|++|+..+.....-.......-+ ..++... .......++.++.-|+..
T Consensus 161 ~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgw 240 (414)
T COG3903 161 SFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGW 240 (414)
T ss_pred ceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhH
Confidence 12223345678889999999999999999988775433332222 2222221 234456788899999999
Q ss_pred hhhhhhhhccCCCCCCHHHHHHHHHhcC-----CCchhchHHHhhccceeecC---CCceehhHHHHHHHHHHHhhcCC
Q 045677 256 EKNIFLDVACFYKWENRDYVSKILDSCG-----FDPIIGISVLIEKSLLTVRE---NDRLWMHDLLQEMGQQIVRRQSP 326 (352)
Q Consensus 256 ~~~~l~~ls~~~~~~~~~~l~~~~~~~~-----~~~~~~l~~L~~~~li~~~~---~~~~~~H~lir~~~~~~~~~~~~ 326 (352)
++-.+.-++.|...|..+.......... +..-..+..++.++++.... .-.|+.-+-.|.|+.+.+.+...
T Consensus 241 e~~~~~rLa~~~g~f~~~l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL~r~~e 319 (414)
T COG3903 241 ERALFGRLAVFVGGFDLGLALAVAAGADVDVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAELHRSGE 319 (414)
T ss_pred HHHHhcchhhhhhhhcccHHHHHhcCCccccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHHHhhhH
Confidence 9999999999999998774433322111 12233466788899887665 22478888888888888877543
No 48
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.05 E-value=5.1e-09 Score=84.91 Aligned_cols=181 Identities=24% Similarity=0.244 Sum_probs=99.0
Q ss_pred CCCCcCcccccHHHHHHHHHHhc---CCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHH
Q 045677 5 LEIPKELVGMESRLEKLKFLMCT---GSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVIS 81 (352)
Q Consensus 5 ~~~~~~~vGR~~~l~~l~~~l~~---~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (352)
|..-++|||.+.-++.+.-++.. .++....+.+|||||+||||||..+++.+...|. +.+ . ... ... .+
T Consensus 20 P~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~---~~s-g-~~i--~k~-~d 91 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFK---ITS-G-PAI--EKA-GD 91 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EE---EEE-C-CC----SC-HH
T ss_pred CCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeE---ecc-c-hhh--hhH-HH
Confidence 44557899999999988766653 3345677999999999999999999999886652 121 1 000 011 11
Q ss_pred HHHHHHHHHhcccCCCccchhhhHHHHHhhhCCceEEEEEeCCCCh--hhhhhhhCCCCCC--------C----------
Q 045677 82 LQKQLLSDLLMLADNSIRNVYDGVNMIGSRLRHKKVLLLIDDVADV--EQLRGLFGKRDWF--------G---------- 141 (352)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~--------~---------- 141 (352)
+. .++.. + +++.+|++|+++-. ..-+.+++.+.+. +
T Consensus 92 l~-~il~~----------------------l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l 147 (233)
T PF05496_consen 92 LA-AILTN----------------------L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINL 147 (233)
T ss_dssp HH-HHHHT-------------------------TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE-
T ss_pred HH-HHHHh----------------------c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccC
Confidence 11 11111 1 23458888999642 2222222221100 1
Q ss_pred -CCceEEEEeCchhHhhhcC--cccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchhHHHHHHhh
Q 045677 142 -LGSMIIITTRDEHLLKLHR--VEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLAVDVLVSFL 218 (352)
Q Consensus 142 -~~~~iiitsr~~~~~~~~~--~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~~l 218 (352)
+-..|=-|||...+....+ +.-..+|...+.+|...++.+.+..-. .+..++.+..|+.++.|.|.--.-+.+..
T Consensus 148 ~~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~--i~i~~~~~~~Ia~rsrGtPRiAnrll~rv 225 (233)
T PF05496_consen 148 PPFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILN--IEIDEDAAEEIARRSRGTPRIANRLLRRV 225 (233)
T ss_dssp ---EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT---EE-HHHHHHHHHCTTTSHHHHHHHHHHH
T ss_pred CCceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhC--CCcCHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 1222335777655544432 334568999999999999987663322 23456889999999999998665555444
Q ss_pred c
Q 045677 219 F 219 (352)
Q Consensus 219 ~ 219 (352)
+
T Consensus 226 r 226 (233)
T PF05496_consen 226 R 226 (233)
T ss_dssp C
T ss_pred H
Confidence 3
No 49
>PRK09087 hypothetical protein; Validated
Probab=99.04 E-value=4.3e-09 Score=87.76 Aligned_cols=145 Identities=16% Similarity=0.092 Sum_probs=88.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHHhh
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQKQLLSDLLMLADNSIRNVYDGVNMIGSR 111 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (352)
.+.++|+|++|+|||+|++.++.... ..|+. .. .+...+...+.
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-----~~~i~-~~----------~~~~~~~~~~~-------------------- 87 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-----ALLIH-PN----------EIGSDAANAAA-------------------- 87 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-----CEEec-HH----------HcchHHHHhhh--------------------
Confidence 46789999999999999998886532 22332 10 01111111100
Q ss_pred hCCceEEEEEeCCCChh-hhhhhhCCCCC-CCCCceEEEEeCch---------hHhhhcCcccEEecCCCCHhHHHHHHH
Q 045677 112 LRHKKVLLLIDDVADVE-QLRGLFGKRDW-FGLGSMIIITTRDE---------HLLKLHRVEEVYKLEALNFDEAFRLFC 180 (352)
Q Consensus 112 l~~~~~llvlDd~~~~~-~~~~l~~~~~~-~~~~~~iiitsr~~---------~~~~~~~~~~~~~l~~l~~~e~~~ll~ 180 (352)
+ -+|+|||++... .-..++..++. ...+..+|+|++.. .+.+.......+++++++.++...+++
T Consensus 88 --~--~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~ 163 (226)
T PRK09087 88 --E--GPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIF 163 (226)
T ss_pred --c--CeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHH
Confidence 0 178889995321 11223332221 13467788888743 222333455789999999999999999
Q ss_pred hhhcCCCCCchhHHHHHHHHHHHcCCCchhHHHHHHhh
Q 045677 181 LKAFDTYKPLEEYLELAKCFVKYASGLPLAVDVLVSFL 218 (352)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~~l 218 (352)
+.+..... ...++.++-|++.+.|....+..+...+
T Consensus 164 ~~~~~~~~--~l~~ev~~~La~~~~r~~~~l~~~l~~L 199 (226)
T PRK09087 164 KLFADRQL--YVDPHVVYYLVSRMERSLFAAQTIVDRL 199 (226)
T ss_pred HHHHHcCC--CCCHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 87743222 2345788889999988888776554443
No 50
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.04 E-value=1.7e-08 Score=92.67 Aligned_cols=197 Identities=17% Similarity=0.117 Sum_probs=115.8
Q ss_pred CCCcCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHHH
Q 045677 6 EIPKELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQKQ 85 (352)
Q Consensus 6 ~~~~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 85 (352)
..=..+||.+..++.|.+.+..+. -.+.++++|++|+||||+|+.++..+--...... .+...-..+..
T Consensus 10 ~~f~dliGQe~vv~~L~~a~~~~r-i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~----------~pCg~C~~C~~ 78 (491)
T PRK14964 10 SSFKDLVGQDVLVRILRNAFTLNK-IPQSILLVGASGVGKTTCARIISLCLNCSNGPTS----------DPCGTCHNCIS 78 (491)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCC----------CCccccHHHHH
Confidence 334568999999999998887432 3467899999999999999999886522111000 00000011111
Q ss_pred HHHHH----hcccCCCccchhhhHHHHHhh----hCCceEEEEEeCCCC--hhhhhhhhCCCCCCCCCceEEEEeCc-hh
Q 045677 86 LLSDL----LMLADNSIRNVYDGVNMIGSR----LRHKKVLLLIDDVAD--VEQLRGLFGKRDWFGLGSMIIITTRD-EH 154 (352)
Q Consensus 86 ~~~~~----~~~~~~~~~~~~~~~~~~~~~----l~~~~~llvlDd~~~--~~~~~~l~~~~~~~~~~~~iiitsr~-~~ 154 (352)
+.... ......+...+++..+.+... ..++.-++|||+++. ....+.++..+.+.+..+.+|++|.+ ..
T Consensus 79 i~~~~~~Dv~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~K 158 (491)
T PRK14964 79 IKNSNHPDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKK 158 (491)
T ss_pred HhccCCCCEEEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHH
Confidence 11100 000001111122211111111 124566999999964 44577777777766677777766543 33
Q ss_pred Hhhh-cCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchhHHHHH
Q 045677 155 LLKL-HRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLAVDVLV 215 (352)
Q Consensus 155 ~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~ 215 (352)
+... ......+.+.+++.++....+...+..... ...++.++.|++.++|.+..+....
T Consensus 159 l~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi--~i~~eAL~lIa~~s~GslR~alslL 218 (491)
T PRK14964 159 IPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENI--EHDEESLKLIAENSSGSMRNALFLL 218 (491)
T ss_pred HHHHHHHhheeeecccccHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3332 345678999999999999998887633221 2345778899999999987554433
No 51
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.04 E-value=5.6e-08 Score=89.57 Aligned_cols=195 Identities=18% Similarity=0.100 Sum_probs=110.3
Q ss_pred CCCCcCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCc---ceeEeeeccccccCCCcHHH
Q 045677 5 LEIPKELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFD---GSSFLADVRERCDKEGSVIS 81 (352)
Q Consensus 5 ~~~~~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 81 (352)
|..-+.+||.+...+.|...+..+. -++.++++||+|+||||+|+.+++.+...-. ..+..+ .
T Consensus 10 P~~~~divGq~~i~~~L~~~i~~~~-l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c-------------~ 75 (472)
T PRK14962 10 PKTFSEVVGQDHVKKLIINALKKNS-ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNEC-------------R 75 (472)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCccc-------------H
Confidence 4444678999998888888887432 3356789999999999999999987642110 000000 0
Q ss_pred HHHHHHHH----HhcccCCCccchhhhHHHHHhh-----hCCceEEEEEeCCCCh--hhhhhhhCCCCCCCCCceEEEEe
Q 045677 82 LQKQLLSD----LLMLADNSIRNVYDGVNMIGSR-----LRHKKVLLLIDDVADV--EQLRGLFGKRDWFGLGSMIIITT 150 (352)
Q Consensus 82 l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-----l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~iiits 150 (352)
.+..+... ................ .+.+. ..+++-++|+|+++.. .....++..+...+..+.+|+++
T Consensus 76 ~c~~i~~g~~~dv~el~aa~~~gid~iR-~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilat 154 (472)
T PRK14962 76 ACRSIDEGTFMDVIELDAASNRGIDEIR-KIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLAT 154 (472)
T ss_pred HHHHHhcCCCCccEEEeCcccCCHHHHH-HHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEe
Confidence 00000000 0000000111111111 11111 1245679999999643 34566666665444555555554
Q ss_pred Cc-hhHhhh-cCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCc-hhHHHHHH
Q 045677 151 RD-EHLLKL-HRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLP-LAVDVLVS 216 (352)
Q Consensus 151 r~-~~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~P-l~i~~~~~ 216 (352)
.+ ..+... ......+.+.+++.++....+...+..... ...++.++.|++.++|.. .++..+-.
T Consensus 155 tn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi--~i~~eal~~Ia~~s~GdlR~aln~Le~ 221 (472)
T PRK14962 155 TNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGI--EIDREALSFIAKRASGGLRDALTMLEQ 221 (472)
T ss_pred CChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 43 333222 334568999999999999998887632221 233567888998887664 55555443
No 52
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.04 E-value=4.1e-08 Score=91.44 Aligned_cols=196 Identities=15% Similarity=0.049 Sum_probs=114.5
Q ss_pred CCcCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHHHH
Q 045677 7 IPKELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQKQL 86 (352)
Q Consensus 7 ~~~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 86 (352)
.-..+||-+..++.|..++..+. -.+.++++|++|+||||+|+.+++.+-.......--+ .. -..+..+
T Consensus 14 ~f~divGq~~v~~~L~~~~~~~~-l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pC------g~----C~~C~~i 82 (509)
T PRK14958 14 CFQEVIGQAPVVRALSNALDQQY-LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPC------ND----CENCREI 82 (509)
T ss_pred CHHHhcCCHHHHHHHHHHHHhCC-CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccC------CC----CHHHHHH
Confidence 33568999999999999998532 3466789999999999999999987632110000000 00 0001111
Q ss_pred HHH----HhcccCCCccchh---hhHHHHHhh-hCCceEEEEEeCCCC--hhhhhhhhCCCCCCCCCceEEEEeCch-hH
Q 045677 87 LSD----LLMLADNSIRNVY---DGVNMIGSR-LRHKKVLLLIDDVAD--VEQLRGLFGKRDWFGLGSMIIITTRDE-HL 155 (352)
Q Consensus 87 ~~~----~~~~~~~~~~~~~---~~~~~~~~~-l~~~~~llvlDd~~~--~~~~~~l~~~~~~~~~~~~iiitsr~~-~~ 155 (352)
... +......+...++ ++.+.+... ..++.-++|||+++. ......++..+...+..+++|++|.+. .+
T Consensus 83 ~~g~~~d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl 162 (509)
T PRK14958 83 DEGRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKL 162 (509)
T ss_pred hcCCCceEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhc
Confidence 000 0000001111122 222211111 124556899999974 456777777776666777777765443 22
Q ss_pred hhh-cCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchhHHHHH
Q 045677 156 LKL-HRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLAVDVLV 215 (352)
Q Consensus 156 ~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~ 215 (352)
... ......+++++++.++....+...+...... ..++.+..|++.++|.+..+....
T Consensus 163 ~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~--~~~~al~~ia~~s~GslR~al~lL 221 (509)
T PRK14958 163 PVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVE--FENAALDLLARAANGSVRDALSLL 221 (509)
T ss_pred hHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCcHHHHHHHH
Confidence 222 2345678899999999888777665322211 234668889999999997665544
No 53
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.03 E-value=5e-08 Score=89.61 Aligned_cols=189 Identities=17% Similarity=0.108 Sum_probs=107.6
Q ss_pred CCcCcccccHHHH--HHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCC-cceeEeeeccccccCCCcHHHHH
Q 045677 7 IPKELVGMESRLE--KLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEF-DGSSFLADVRERCDKEGSVISLQ 83 (352)
Q Consensus 7 ~~~~~vGR~~~l~--~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~ 83 (352)
..+.++|-..... .+.++... .+....++|+|++|+|||+|+..+++.+.+.+ ...+.+... .++.
T Consensus 104 FdnFv~g~~n~~a~~~~~~~~~~-~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~----------~~f~ 172 (440)
T PRK14088 104 FENFVVGPGNSFAYHAALEVAKN-PGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS----------EKFL 172 (440)
T ss_pred ccccccCCchHHHHHHHHHHHhC-cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH----------HHHH
Confidence 3444568666543 33333332 22245699999999999999999999876543 333333322 2333
Q ss_pred HHHHHHHhcccCCCccchhhhHHHHHhhhCCceEEEEEeCCCCh---hh-hhhhhCCCCC-CCCCceEEEEeC-chhH--
Q 045677 84 KQLLSDLLMLADNSIRNVYDGVNMIGSRLRHKKVLLLIDDVADV---EQ-LRGLFGKRDW-FGLGSMIIITTR-DEHL-- 155 (352)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~---~~-~~~l~~~~~~-~~~~~~iiitsr-~~~~-- 155 (352)
..+...+... ... .+........-+|+|||++.. .. -..++..+.. ...+..+|+||. .+.-
T Consensus 173 ~~~~~~~~~~------~~~----~f~~~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~ 242 (440)
T PRK14088 173 NDLVDSMKEG------KLN----EFREKYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLS 242 (440)
T ss_pred HHHHHHHhcc------cHH----HHHHHHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHH
Confidence 4444333211 111 223333334558999999632 11 1233322211 123457888775 3211
Q ss_pred ------hhhcCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchhHHHHHHhh
Q 045677 156 ------LKLHRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLAVDVLVSFL 218 (352)
Q Consensus 156 ------~~~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~~l 218 (352)
.+.......+.+.+.+.+.-..++++.+..... ...++.++.|++.+.|+...+.-+...+
T Consensus 243 ~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~--~l~~ev~~~Ia~~~~~~~R~L~g~l~~l 309 (440)
T PRK14088 243 EFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEHG--ELPEEVLNFVAENVDDNLRRLRGAIIKL 309 (440)
T ss_pred HHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHhccccCHHHHHHHHHHH
Confidence 111223457889999999999999887643222 2335788999999999887776554444
No 54
>PF13173 AAA_14: AAA domain
Probab=99.01 E-value=1.1e-09 Score=83.28 Aligned_cols=119 Identities=20% Similarity=0.187 Sum_probs=75.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHHhhh
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQKQLLSDLLMLADNSIRNVYDGVNMIGSRL 112 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 112 (352)
++++|+|+.|+||||++.+++++.. ......++. ..+... . .... .+....+.+..
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~-~~~~~~--------~-~~~~-------------~~~~~~~~~~~ 58 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL-PPENILYIN-FDDPRD--------R-RLAD-------------PDLLEYFLELI 58 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc-ccccceeec-cCCHHH--------H-HHhh-------------hhhHHHHHHhh
Confidence 6899999999999999999998866 222233332 211110 0 0000 00122233333
Q ss_pred CCceEEEEEeCCCChhhhhhhhCCCCCCCCCceEEEEeCchhHhhh------cCcccEEecCCCCHhHH
Q 045677 113 RHKKVLLLIDDVADVEQLRGLFGKRDWFGLGSMIIITTRDEHLLKL------HRVEEVYKLEALNFDEA 175 (352)
Q Consensus 113 ~~~~~llvlDd~~~~~~~~~l~~~~~~~~~~~~iiitsr~~~~~~~------~~~~~~~~l~~l~~~e~ 175 (352)
.+++.+++||++....+|...+..+.+...+.+||+|+........ ......+++.||+..|.
T Consensus 59 ~~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 59 KPGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred ccCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 3477899999998887777777666554567899999887654422 11234689999998874
No 55
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=99.01 E-value=3.8e-07 Score=80.98 Aligned_cols=290 Identities=16% Similarity=0.086 Sum_probs=155.7
Q ss_pred ccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHH-HHHHHHhcCCCcceeEeeeccccccCCCcHHHHHHHHHHH---
Q 045677 14 MESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLA-RVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQKQLLSD--- 89 (352)
Q Consensus 14 R~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 89 (352)
|...+++|..||.. ...-+|+|.||.|+||+.|+ .++...- .. +.+.++.......+. ..++..++.+
T Consensus 1 R~e~~~~L~~wL~e--~~~TFIvV~GPrGSGK~elV~d~~L~~r----~~-vL~IDC~~i~~ar~D-~~~I~~lA~qvGY 72 (431)
T PF10443_consen 1 RKEAIEQLKSWLNE--NPNTFIVVQGPRGSGKRELVMDHVLKDR----KN-VLVIDCDQIVKARGD-AAFIKNLASQVGY 72 (431)
T ss_pred CchHHHHHHHHHhc--CCCeEEEEECCCCCCccHHHHHHHHhCC----CC-EEEEEChHhhhccCh-HHHHHHHHHhcCC
Confidence 67788999999994 34479999999999999998 5555432 12 233333322221111 1222222211
Q ss_pred --------------------HhcccCCCccchhhhHHHHHhh---------------------------h---CCceEEE
Q 045677 90 --------------------LLMLADNSIRNVYDGVNMIGSR---------------------------L---RHKKVLL 119 (352)
Q Consensus 90 --------------------~~~~~~~~~~~~~~~~~~~~~~---------------------------l---~~~~~ll 119 (352)
+.+...+-..+.+..+..+... + ...+.+|
T Consensus 73 ~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVV 152 (431)
T PF10443_consen 73 FPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVV 152 (431)
T ss_pred CcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEE
Confidence 1111111122222222111110 0 0136799
Q ss_pred EEeCCCC-----------hhhhhhhhCCCCCCCCCceEEEEeCchhHhh----hc--CcccEEecCCCCHhHHHHHHHhh
Q 045677 120 LIDDVAD-----------VEQLRGLFGKRDWFGLGSMIIITTRDEHLLK----LH--RVEEVYKLEALNFDEAFRLFCLK 182 (352)
Q Consensus 120 vlDd~~~-----------~~~~~~l~~~~~~~~~~~~iiitsr~~~~~~----~~--~~~~~~~l~~l~~~e~~~ll~~~ 182 (352)
||||+.. ..+|...+.. .+-.+||+.|-+..... .. .....+.|...+.+.|..++...
T Consensus 153 VIdnF~~k~~~~~~iy~~laeWAa~Lv~----~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~ 228 (431)
T PF10443_consen 153 VIDNFLHKAEENDFIYDKLAEWAASLVQ----NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQ 228 (431)
T ss_pred EEcchhccCcccchHHHHHHHHHHHHHh----cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHH
Confidence 9999921 2345554444 34568888877653322 22 34578999999999999999888
Q ss_pred hcCCCCC------------------chhHHHHHHHHHHHcCCCchhHHHHHHhhcCCChhHHHHHHHHHccCCchhHHHH
Q 045677 183 AFDTYKP------------------LEEYLELAKCFVKYASGLPLAVDVLVSFLFGRPVDQWRSTQERLKRDPENKILGI 244 (352)
Q Consensus 183 ~~~~~~~------------------~~~~~~~~~~i~~~~~G~Pl~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (352)
....... .......++...+..||--.-|+.+++.++... .....++.+- +.+...+
T Consensus 229 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe--~p~~Av~~iI---~qsa~eI 303 (431)
T PF10443_consen 229 LDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGE--SPEEAVEEII---SQSASEI 303 (431)
T ss_pred hcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCC--CHHHHHHHHH---HHHHHHH
Confidence 7432110 013456688899999999999999999998742 1222222221 1223333
Q ss_pred HHhhhc-------cCcH---hhhhhhhhhccCCCCCCHHHHHHHHHhcCCCchhchHHHhhccceeecC-CCc---ee-h
Q 045677 245 LQISFD-------GLKE---AEKNIFLDVACFYKWENRDYVSKILDSCGFDPIIGISVLIEKSLLTVRE-NDR---LW-M 309 (352)
Q Consensus 245 l~~~~~-------~L~~---~~~~~l~~ls~~~~~~~~~~l~~~~~~~~~~~~~~l~~L~~~~li~~~~-~~~---~~-~ 309 (352)
....+. ..+. .+..++..+|-- ..++...+..-- .-....+..|..|.+..||+... +|+ ++ =
T Consensus 304 ~k~fl~~~~~~~~~~~Wt~~QaW~LIk~Ls~~-~~v~Y~~ll~~~-lFk~~~E~~L~aLe~aeLItv~~~~G~p~~I~pG 381 (431)
T PF10443_consen 304 RKMFLLDDSDDAKSLKWTREQAWYLIKLLSKN-DEVPYNELLLSP-LFKGNDETALRALEQAELITVTTDNGRPSTIRPG 381 (431)
T ss_pred HHHHhcCCCCcccCCCCCHHHHHHHHHHhccC-CcCcHHHHHccc-ccCCCChHHHHHHHHCCcEEEEecCCcCCeeECC
Confidence 322222 1221 223333333221 224444432210 01113566899999999999765 443 22 2
Q ss_pred hHHHHHHHHHHHh
Q 045677 310 HDLLQEMGQQIVR 322 (352)
Q Consensus 310 H~lir~~~~~~~~ 322 (352)
-|+.|......+.
T Consensus 382 kPvy~aAF~~L~~ 394 (431)
T PF10443_consen 382 KPVYRAAFKRLVN 394 (431)
T ss_pred ChhHHHHHHHHhh
Confidence 4566666555544
No 56
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.00 E-value=3.2e-08 Score=89.99 Aligned_cols=204 Identities=13% Similarity=0.130 Sum_probs=116.1
Q ss_pred CCCCcCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCC-C-cceeEeeeccccccCCCcHHHH
Q 045677 5 LEIPKELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHE-F-DGSSFLADVRERCDKEGSVISL 82 (352)
Q Consensus 5 ~~~~~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~l 82 (352)
|..-..++|.+..++.|..++.++. -.+.++++||+|+||||+|..+++.+.-. . ....|.......+.. =..
T Consensus 12 P~~~~eiiGq~~~~~~L~~~~~~~~-~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~----c~~ 86 (397)
T PRK14955 12 PKKFADITAQEHITRTIQNSLRMGR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGE----CES 86 (397)
T ss_pred CCcHhhccChHHHHHHHHHHHHhCC-cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCC----CHH
Confidence 3444678999999999999888432 34568899999999999999999886431 1 000000000000000 011
Q ss_pred HHHHHHHHh----cccCCCccchhhhHHHHHhhh-----CCceEEEEEeCCCCh--hhhhhhhCCCCCCCCCceEEEEe-
Q 045677 83 QKQLLSDLL----MLADNSIRNVYDGVNMIGSRL-----RHKKVLLLIDDVADV--EQLRGLFGKRDWFGLGSMIIITT- 150 (352)
Q Consensus 83 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l-----~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~iiits- 150 (352)
+..+..... ..........++..+ +.+.+ .+.+-++|+|+++.. ..++.++..+.+....+.+|+++
T Consensus 87 c~~~~~~~~~n~~~~~~~~~~~id~Ir~-l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~ 165 (397)
T PRK14955 87 CRDFDAGTSLNISEFDAASNNSVDDIRL-LRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATT 165 (397)
T ss_pred HHHHhcCCCCCeEeecccccCCHHHHHH-HHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeC
Confidence 111111000 000001111222222 22222 245668999999643 45667776666555666666554
Q ss_pred CchhHhhh-cCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchhHHHHHH
Q 045677 151 RDEHLLKL-HRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLAVDVLVS 216 (352)
Q Consensus 151 r~~~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~ 216 (352)
+...+... ......+++.+++.++....+........ ....++.++.+++.++|.+.-+.....
T Consensus 166 ~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g--~~i~~~al~~l~~~s~g~lr~a~~~L~ 230 (397)
T PRK14955 166 ELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEG--ISVDADALQLIGRKAQGSMRDAQSILD 230 (397)
T ss_pred ChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 33333322 23346789999999999988887653221 123457789999999999976655444
No 57
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.99 E-value=1.2e-07 Score=88.52 Aligned_cols=189 Identities=14% Similarity=0.079 Sum_probs=113.0
Q ss_pred CcCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCc--c-eeEeeeccccccCCCcHHHHHH
Q 045677 8 PKELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFD--G-SSFLADVRERCDKEGSVISLQK 84 (352)
Q Consensus 8 ~~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~l~~ 84 (352)
=..+||.+..++.|...+..+ ...+.++++|++|+||||+|+.+++.+..... . .+-.+ ..+.
T Consensus 15 f~diiGq~~~v~~L~~~i~~~-rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C-------------~sC~ 80 (546)
T PRK14957 15 FAEVAGQQHALNSLVHALETQ-KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKC-------------ENCV 80 (546)
T ss_pred HHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCccc-------------HHHH
Confidence 356899999999999998853 23466789999999999999999987642110 0 00000 0000
Q ss_pred HHHHH----Hhcc---cCCCccchhhhHHHHHhh-hCCceEEEEEeCCC--ChhhhhhhhCCCCCCCCCceEEEEeCch-
Q 045677 85 QLLSD----LLML---ADNSIRNVYDGVNMIGSR-LRHKKVLLLIDDVA--DVEQLRGLFGKRDWFGLGSMIIITTRDE- 153 (352)
Q Consensus 85 ~~~~~----~~~~---~~~~~~~~~~~~~~~~~~-l~~~~~llvlDd~~--~~~~~~~l~~~~~~~~~~~~iiitsr~~- 153 (352)
.+... +... .....+....+.+.+... ..+++-++|||+++ +....+.++..+...+..+.+|++|.+.
T Consensus 81 ~i~~~~~~dlieidaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~ 160 (546)
T PRK14957 81 AINNNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYH 160 (546)
T ss_pred HHhcCCCCceEEeecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChh
Confidence 00000 0000 000111122222222211 23566799999996 4455777777777666677766555433
Q ss_pred hHhhh-cCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchhHH
Q 045677 154 HLLKL-HRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLAVD 212 (352)
Q Consensus 154 ~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~ 212 (352)
.+... ......+++.+++.++....+.+.+.... ....++.+..|++.++|.+.-+.
T Consensus 161 kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~eg--i~~e~~Al~~Ia~~s~GdlR~al 218 (546)
T PRK14957 161 KIPVTILSRCIQLHLKHISQADIKDQLKIILAKEN--INSDEQSLEYIAYHAKGSLRDAL 218 (546)
T ss_pred hhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHH
Confidence 33322 34567899999999999988887553211 12345778889999999886443
No 58
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.99 E-value=4.4e-08 Score=88.15 Aligned_cols=184 Identities=11% Similarity=0.057 Sum_probs=107.1
Q ss_pred cCcccccHHHHHHHHHHhcCCC--------CeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHH
Q 045677 9 KELVGMESRLEKLKFLMCTGSN--------DVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVI 80 (352)
Q Consensus 9 ~~~vGR~~~l~~l~~~l~~~~~--------~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (352)
..++|.+..++.|.+.+..+.. -.+.++++||+|+|||++|..++..+--..... ..++..
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~---~~Cg~C-------- 73 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDE---PGCGEC-------- 73 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCC---CCCCCC--------
Confidence 4578999999999999985431 357789999999999999999998753221100 000000
Q ss_pred HHHHHHHHHHhc-----ccCCCccchhhhHHHHHhhh-----CCceEEEEEeCCCCh--hhhhhhhCCCCCCCCCceEEE
Q 045677 81 SLQKQLLSDLLM-----LADNSIRNVYDGVNMIGSRL-----RHKKVLLLIDDVADV--EQLRGLFGKRDWFGLGSMIII 148 (352)
Q Consensus 81 ~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l-----~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~iii 148 (352)
..+..+...... ......-.+++. ..+.+.. .+++-++|||+++.. .....++..+...+.+..+|+
T Consensus 74 ~~C~~~~~~~hpD~~~i~~~~~~i~i~~i-R~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL 152 (394)
T PRK07940 74 RACRTVLAGTHPDVRVVAPEGLSIGVDEV-RELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLL 152 (394)
T ss_pred HHHHHHhcCCCCCEEEeccccccCCHHHH-HHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEE
Confidence 000111000000 000001111111 1122221 244568999999643 445666666665566676666
Q ss_pred EeCch-hHhhh-cCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchhH
Q 045677 149 TTRDE-HLLKL-HRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLAV 211 (352)
Q Consensus 149 tsr~~-~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i 211 (352)
+|.+. .+.+. ......+.+++++.++..+++.+... . .++.+..++..++|.|..-
T Consensus 153 ~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~---~----~~~~a~~la~~s~G~~~~A 210 (394)
T PRK07940 153 CAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG---V----DPETARRAARASQGHIGRA 210 (394)
T ss_pred EECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC---C----CHHHHHHHHHHcCCCHHHH
Confidence 65543 33333 34467899999999999998875421 1 1355778899999999644
No 59
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.98 E-value=5.6e-08 Score=85.75 Aligned_cols=176 Identities=16% Similarity=0.206 Sum_probs=111.0
Q ss_pred cCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCC-----CcceeEeeeccccccCCCcHHHHH
Q 045677 9 KELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHE-----FDGSSFLADVRERCDKEGSVISLQ 83 (352)
Q Consensus 9 ~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~ 83 (352)
+..+|-+...+.|.+++..+ .-++...++|+.|+|||++|..+++.+... +.....+... ...... .+-+
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~-~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~---~~~~i~-v~~i 78 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKN-RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI---NKKSIG-VDDI 78 (313)
T ss_pred hhccCcHHHHHHHHHHHHcC-CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc---cCCCCC-HHHH
Confidence 45789898899999998843 335778899999999999999999875221 1111111100 000011 1111
Q ss_pred HHHHHHHhcccCCCccchhhhHHHHHhhhCCceEEEEEeCCC--ChhhhhhhhCCCCCCCCCceEEEEeCchh-Hhhh-c
Q 045677 84 KQLLSDLLMLADNSIRNVYDGVNMIGSRLRHKKVLLLIDDVA--DVEQLRGLFGKRDWFGLGSMIIITTRDEH-LLKL-H 159 (352)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~--~~~~~~~l~~~~~~~~~~~~iiitsr~~~-~~~~-~ 159 (352)
+++...+... -..+++-++|||+++ +....+.++..+.+.+.++.+|+++.+.. +.+. .
T Consensus 79 r~~~~~~~~~-----------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~ 141 (313)
T PRK05564 79 RNIIEEVNKK-----------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIK 141 (313)
T ss_pred HHHHHHHhcC-----------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHH
Confidence 2222211110 012455578888874 55678888888887788888888776543 2222 2
Q ss_pred CcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchhHH
Q 045677 160 RVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLAVD 212 (352)
Q Consensus 160 ~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~ 212 (352)
..+..+.+.+++.++...++.+.... ..++.++.++..++|.|.-+.
T Consensus 142 SRc~~~~~~~~~~~~~~~~l~~~~~~------~~~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 142 SRCQIYKLNRLSKEEIEKFISYKYND------IKEEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred hhceeeeCCCcCHHHHHHHHHHHhcC------CCHHHHHHHHHHcCCCHHHHH
Confidence 44678999999999999988765421 122447788899999987554
No 60
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.98 E-value=1.4e-08 Score=96.04 Aligned_cols=197 Identities=17% Similarity=0.116 Sum_probs=118.3
Q ss_pred CCCcCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHHH
Q 045677 6 EIPKELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQKQ 85 (352)
Q Consensus 6 ~~~~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 85 (352)
..=..+||.+..++.|...+..+. -.+.++++|+.|+||||+|+.+++.+...... . ..+.+. -..+..
T Consensus 13 ~~f~divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~---~------~~pCg~-C~~C~~ 81 (647)
T PRK07994 13 QTFAEVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAKGLNCETGI---T------ATPCGE-CDNCRE 81 (647)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhhhccCC---C------CCCCCC-CHHHHH
Confidence 334568999999999999888532 34667899999999999999999875332100 0 000000 011112
Q ss_pred HHHH----HhcccC---CCccchhhhHHHHHhh-hCCceEEEEEeCCC--ChhhhhhhhCCCCCCCCCceEEEEeCch-h
Q 045677 86 LLSD----LLMLAD---NSIRNVYDGVNMIGSR-LRHKKVLLLIDDVA--DVEQLRGLFGKRDWFGLGSMIIITTRDE-H 154 (352)
Q Consensus 86 ~~~~----~~~~~~---~~~~~~~~~~~~~~~~-l~~~~~llvlDd~~--~~~~~~~l~~~~~~~~~~~~iiitsr~~-~ 154 (352)
+... +..... ...+++.++.+.+... ..++.-++|||+++ +....+.++..+...+..+++|++|.+. .
T Consensus 82 i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~k 161 (647)
T PRK07994 82 IEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQK 161 (647)
T ss_pred HHcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccc
Confidence 1110 000000 1111222222222211 23566799999996 4456788887777666777766655543 3
Q ss_pred Hhhh-cCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchhHHHHH
Q 045677 155 LLKL-HRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLAVDVLV 215 (352)
Q Consensus 155 ~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~ 215 (352)
+... ...+..+.+++++.++....+...+..... ...++.+..|+..++|.+.-...+.
T Consensus 162 Ll~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i--~~e~~aL~~Ia~~s~Gs~R~Al~ll 221 (647)
T PRK07994 162 LPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQI--PFEPRALQLLARAADGSMRDALSLT 221 (647)
T ss_pred cchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3322 334678999999999999998876522111 1234678889999999888555443
No 61
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.97 E-value=8.2e-08 Score=90.80 Aligned_cols=199 Identities=16% Similarity=0.130 Sum_probs=117.7
Q ss_pred CCCcCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCc-c--eeEeeeccccccCCCcHHHH
Q 045677 6 EIPKELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFD-G--SSFLADVRERCDKEGSVISL 82 (352)
Q Consensus 6 ~~~~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~l 82 (352)
..-..+||.+..++.|.+.+..+. -.+.++++|+.|+||||+|+.+++.+..... . ..-+. ..+. -..
T Consensus 21 ~~f~dliGq~~~v~~L~~~~~~gr-i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~-------~cg~-c~~ 91 (598)
T PRK09111 21 QTFDDLIGQEAMVRTLTNAFETGR-IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTID-------LCGV-GEH 91 (598)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccc-------cCcc-cHH
Confidence 334568999999999999998532 3467889999999999999999987642211 0 00000 0000 011
Q ss_pred HHHHHHHHh----c---ccCCCccchhhhHHHHHhh-hCCceEEEEEeCCCCh--hhhhhhhCCCCCCCCCceEEEEe-C
Q 045677 83 QKQLLSDLL----M---LADNSIRNVYDGVNMIGSR-LRHKKVLLLIDDVADV--EQLRGLFGKRDWFGLGSMIIITT-R 151 (352)
Q Consensus 83 ~~~~~~~~~----~---~~~~~~~~~~~~~~~~~~~-l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~iiits-r 151 (352)
+..+..... . ......+++.++.+.+... ..++.-++|||+++.. ...+.++..+.+....+.+|+++ .
T Consensus 92 C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte 171 (598)
T PRK09111 92 CQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTE 171 (598)
T ss_pred HHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCC
Confidence 111111100 0 0001111222222222111 1234568999999643 45777777776656677776655 3
Q ss_pred chhHhhh-cCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchhHHHHH
Q 045677 152 DEHLLKL-HRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLAVDVLV 215 (352)
Q Consensus 152 ~~~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~ 215 (352)
...+... ...+..+.+.+++.++....+.+.+.... ....++.++.|++.++|.+..+....
T Consensus 172 ~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~keg--i~i~~eAl~lIa~~a~Gdlr~al~~L 234 (598)
T PRK09111 172 IRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEG--VEVEDEALALIARAAEGSVRDGLSLL 234 (598)
T ss_pred hhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3333322 23457899999999999999988763222 12334778899999999998776544
No 62
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.97 E-value=5.4e-08 Score=81.65 Aligned_cols=189 Identities=14% Similarity=0.091 Sum_probs=113.4
Q ss_pred CCCCcCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcC--CCcceeEeeeccccccCCCcHHHH
Q 045677 5 LEIPKELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSH--EFDGSSFLADVRERCDKEGSVISL 82 (352)
Q Consensus 5 ~~~~~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l 82 (352)
|..-+.++|.+..++.|...+.. ...+..++|||+|+|||+-|..++..+-. -+.+.+.-.++....... ....-
T Consensus 32 Pkt~de~~gQe~vV~~L~~a~~~--~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-vvr~K 108 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKNALLR--RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-VVREK 108 (346)
T ss_pred CCcHHhhcchHHHHHHHHHHHhh--cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-chhhh
Confidence 44456789999999999999985 45688899999999999999999887532 244444322221111110 00000
Q ss_pred HHHHHHHHhcccCCCccchhhhHHHHHhhhCCceEEEEEeCCCC--hhhhhhhhCCCCCCCCCceEE-EEeCchhHhhh-
Q 045677 83 QKQLLSDLLMLADNSIRNVYDGVNMIGSRLRHKKVLLLIDDVAD--VEQLRGLFGKRDWFGLGSMII-ITTRDEHLLKL- 158 (352)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~--~~~~~~l~~~~~~~~~~~~ii-itsr~~~~~~~- 158 (352)
...+..-....... ...-....-+||||+++. .+.|..+.+.+...+...++| |++--..+...
T Consensus 109 ik~fakl~~~~~~~------------~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi 176 (346)
T KOG0989|consen 109 IKNFAKLTVLLKRS------------DGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPL 176 (346)
T ss_pred hcCHHHHhhccccc------------cCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHH
Confidence 00111100000000 000011224899999975 456888888877666666644 45543333222
Q ss_pred cCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchh
Q 045677 159 HRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLA 210 (352)
Q Consensus 159 ~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~ 210 (352)
.....-++.++|..++..+-|+..+... ....+.+..+.|++.++|--.-
T Consensus 177 ~SRC~KfrFk~L~d~~iv~rL~~Ia~~E--~v~~d~~al~~I~~~S~GdLR~ 226 (346)
T KOG0989|consen 177 VSRCQKFRFKKLKDEDIVDRLEKIASKE--GVDIDDDALKLIAKISDGDLRR 226 (346)
T ss_pred HhhHHHhcCCCcchHHHHHHHHHHHHHh--CCCCCHHHHHHHHHHcCCcHHH
Confidence 2345678899999999888888776322 2234457889999999986443
No 63
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.96 E-value=2.4e-07 Score=83.72 Aligned_cols=188 Identities=13% Similarity=0.126 Sum_probs=111.6
Q ss_pred CCCCcCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCC--------cceeEeeeccccccCC
Q 045677 5 LEIPKELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEF--------DGSSFLADVRERCDKE 76 (352)
Q Consensus 5 ~~~~~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~--------~~~~~~~~~~~~~~~~ 76 (352)
|..=+.++|.+..++.+.+++..+ .-.+.++++|++|+|||++|..+++.+.... ...++..+ . . ..
T Consensus 13 P~~~~~iig~~~~~~~l~~~i~~~-~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~--~-~-~~ 87 (367)
T PRK14970 13 PQTFDDVVGQSHITNTLLNAIENN-HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELD--A-A-SN 87 (367)
T ss_pred CCcHHhcCCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEec--c-c-cC
Confidence 344467899999999999999853 2346888999999999999999988764321 11111100 0 0 00
Q ss_pred CcHHHHHHHHHHHHhcccCCCccchhhhHHHHHhhhCCceEEEEEeCCCCh--hhhhhhhCCCCCCCCCceEEEEeC-ch
Q 045677 77 GSVISLQKQLLSDLLMLADNSIRNVYDGVNMIGSRLRHKKVLLLIDDVADV--EQLRGLFGKRDWFGLGSMIIITTR-DE 153 (352)
Q Consensus 77 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~iiitsr-~~ 153 (352)
.. .+....+...+... -..+++-++++|+++.. ..+..++..+...+..+.+|+++. ..
T Consensus 88 ~~-~~~i~~l~~~~~~~-----------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~ 149 (367)
T PRK14970 88 NS-VDDIRNLIDQVRIP-----------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKH 149 (367)
T ss_pred CC-HHHHHHHHHHHhhc-----------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcc
Confidence 00 01111111111000 01234558999999643 346666555544344556665553 22
Q ss_pred hHhh-hcCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchhHHHHHHh
Q 045677 154 HLLK-LHRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLAVDVLVSF 217 (352)
Q Consensus 154 ~~~~-~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~~ 217 (352)
.+.. .......+++++++.++...++...+..... ...++.++.+++.++|.+..+......
T Consensus 150 kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~--~i~~~al~~l~~~~~gdlr~~~~~lek 212 (367)
T PRK14970 150 KIIPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGI--KFEDDALHIIAQKADGALRDALSIFDR 212 (367)
T ss_pred cCCHHHHhcceeEecCCccHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 2222 2234567899999999999888876533222 123477889999999988766544443
No 64
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.95 E-value=8.6e-08 Score=78.06 Aligned_cols=88 Identities=16% Similarity=0.193 Sum_probs=62.4
Q ss_pred CceEEEEEeCCCCh--hhhhhhhCCCCCCCCCceEEEEeCch-hHhhh-cCcccEEecCCCCHhHHHHHHHhhhcCCCCC
Q 045677 114 HKKVLLLIDDVADV--EQLRGLFGKRDWFGLGSMIIITTRDE-HLLKL-HRVEEVYKLEALNFDEAFRLFCLKAFDTYKP 189 (352)
Q Consensus 114 ~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~iiitsr~~-~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~ 189 (352)
+.+-++||||++.. ...+.++..+...+..+.+|+++++. .+... ......+.+.+++.++..+++.+..
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~g------ 168 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQG------ 168 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHcC------
Confidence 45679999999643 44666766666556677777776643 22222 2345689999999999999998872
Q ss_pred chhHHHHHHHHHHHcCCCch
Q 045677 190 LEEYLELAKCFVKYASGLPL 209 (352)
Q Consensus 190 ~~~~~~~~~~i~~~~~G~Pl 209 (352)
..++.+..+++.++|.|.
T Consensus 169 --i~~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 169 --ISEEAAELLLALAGGSPG 186 (188)
T ss_pred --CCHHHHHHHHHHcCCCcc
Confidence 123668899999999985
No 65
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.95 E-value=1e-08 Score=79.82 Aligned_cols=46 Identities=30% Similarity=0.419 Sum_probs=38.7
Q ss_pred ccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCC
Q 045677 12 VGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHE 59 (352)
Q Consensus 12 vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~ 59 (352)
+||+..++.+...+.. ...+.+.|+|++|+|||++++.++..+...
T Consensus 1 ~~~~~~~~~i~~~~~~--~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~ 46 (151)
T cd00009 1 VGQEEAIEALREALEL--PPPKNLLLYGPPGTGKTTLARAIANELFRP 46 (151)
T ss_pred CchHHHHHHHHHHHhC--CCCCeEEEECCCCCCHHHHHHHHHHHhhcC
Confidence 4788999999998874 344789999999999999999999987543
No 66
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.95 E-value=1.1e-07 Score=90.58 Aligned_cols=202 Identities=15% Similarity=0.151 Sum_probs=116.9
Q ss_pred CCCCcCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHH
Q 045677 5 LEIPKELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQK 84 (352)
Q Consensus 5 ~~~~~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (352)
|..-+.+||.+..++.|..++..+ .-.+.++++|++|+|||++|..+++.+.........- .+ +. -..+.
T Consensus 12 P~~~~eiiGq~~~~~~L~~~i~~~-~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~-----~c---~~-c~~c~ 81 (585)
T PRK14950 12 SQTFAELVGQEHVVQTLRNAIAEG-RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGR-----PC---GT-CEMCR 81 (585)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhC-CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCC-----CC---cc-CHHHH
Confidence 334467899999999999988853 2346678999999999999999998764221100000 00 00 11222
Q ss_pred HHHHHHhc----ccCCCccchh---hhHHHHHhh-hCCceEEEEEeCCCCh--hhhhhhhCCCCCCCCCceEEEEeCc-h
Q 045677 85 QLLSDLLM----LADNSIRNVY---DGVNMIGSR-LRHKKVLLLIDDVADV--EQLRGLFGKRDWFGLGSMIIITTRD-E 153 (352)
Q Consensus 85 ~~~~~~~~----~~~~~~~~~~---~~~~~~~~~-l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~iiitsr~-~ 153 (352)
.+...... .........+ ++.+.+... ..+.+-++|||+++.. ...+.|+..+......+.+|+++.+ .
T Consensus 82 ~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~ 161 (585)
T PRK14950 82 AIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVH 161 (585)
T ss_pred HHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChh
Confidence 22211100 0000111122 222111111 1245679999999643 4567776666555556666665543 3
Q ss_pred hHhh-hcCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchhHHHHHHhh
Q 045677 154 HLLK-LHRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLAVDVLVSFL 218 (352)
Q Consensus 154 ~~~~-~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~~l 218 (352)
.+.. .......+.+.+++..+....+...+...... ..++.+..+++.++|.+..+......+
T Consensus 162 kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~--i~~eal~~La~~s~Gdlr~al~~LekL 225 (585)
T PRK14950 162 KVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGIN--LEPGALEAIARAATGSMRDAENLLQQL 225 (585)
T ss_pred hhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3322 22345678899999999998888765332211 234678899999999998766554443
No 67
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.95 E-value=8.9e-08 Score=89.53 Aligned_cols=252 Identities=11% Similarity=0.117 Sum_probs=135.9
Q ss_pred CCCcCcccccHHHH--HHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCC-cceeEeeeccccccCCCcHHHH
Q 045677 6 EIPKELVGMESRLE--KLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEF-DGSSFLADVRERCDKEGSVISL 82 (352)
Q Consensus 6 ~~~~~~vGR~~~l~--~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l 82 (352)
...+.++|-...+. .+.............++|+|++|+|||.|+..+++.+...+ ...+.+... ..+
T Consensus 286 TFDnFvvG~sN~~A~aaa~avae~~~~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yita----------eef 355 (617)
T PRK14086 286 TFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSS----------EEF 355 (617)
T ss_pred CHhhhcCCCccHHHHHHHHHHHhCccccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH----------HHH
Confidence 34445567766533 33444433222335589999999999999999999876532 223333321 233
Q ss_pred HHHHHHHHhcccCCCccchhhhHHHHHhhhCCceEEEEEeCCCCh---hh-hhhhhCCCCCC-CCCceEEEEeCch----
Q 045677 83 QKQLLSDLLMLADNSIRNVYDGVNMIGSRLRHKKVLLLIDDVADV---EQ-LRGLFGKRDWF-GLGSMIIITTRDE---- 153 (352)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~---~~-~~~l~~~~~~~-~~~~~iiitsr~~---- 153 (352)
...+...+... . ...+.+.+.. .=+|+|||++.. +. -+.++..++.. ..+..|||||...
T Consensus 356 ~~el~~al~~~------~----~~~f~~~y~~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL 424 (617)
T PRK14086 356 TNEFINSIRDG------K----GDSFRRRYRE-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQL 424 (617)
T ss_pred HHHHHHHHHhc------c----HHHHHHHhhc-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhh
Confidence 33333332110 1 1122222222 348899999532 11 13333333211 2356688888742
Q ss_pred -----hHhhhcCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchhHHHHHHhhcC------C-
Q 045677 154 -----HLLKLHRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLAVDVLVSFLFG------R- 221 (352)
Q Consensus 154 -----~~~~~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~~l~~------~- 221 (352)
.+.+.+.....+.|.+.+.+.-..+|++.+...... ..+++++-|++.+.++.-.|+-+...+.. +
T Consensus 425 ~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~--l~~eVi~yLa~r~~rnvR~LegaL~rL~a~a~~~~~~ 502 (617)
T PRK14086 425 VTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQLN--APPEVLEFIASRISRNIRELEGALIRVTAFASLNRQP 502 (617)
T ss_pred hhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhCCC
Confidence 122333445678999999999999998877443322 34588888999988888777765554421 1
Q ss_pred -ChhHHHHHHHHHccC------CchhHHHH----HHhhhccCc--------HhhhhhhhhhccCCCCCCHHHHHHHHH
Q 045677 222 -PVDQWRSTQERLKRD------PENKILGI----LQISFDGLK--------EAEKNIFLDVACFYKWENRDYVSKILD 280 (352)
Q Consensus 222 -~~~~~~~~~~~~~~~------~~~~~~~~----l~~~~~~L~--------~~~~~~l~~ls~~~~~~~~~~l~~~~~ 280 (352)
........+..+... ....|... |..+.+.|. ...|++.+|++---.+.+...+...++
T Consensus 503 itl~la~~vL~~~~~~~~~~~it~d~I~~~Va~~f~v~~~dl~s~~R~~~i~~aRqiAMYL~r~lt~~Sl~~IG~~Fg 580 (617)
T PRK14086 503 VDLGLTEIVLRDLIPEDSAPEITAAAIMAATADYFGLTVEDLCGTSRSRVLVTARQIAMYLCRELTDLSLPKIGQQFG 580 (617)
T ss_pred CCHHHHHHHHHHhhccccCCcCCHHHHHHHHHHHhCCCHHHHhCCCCCcccchHHHHHHHHHHHHcCCCHHHHHHHhC
Confidence 122333344433211 01222222 222222221 144666666666556667777777765
No 68
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.94 E-value=1.1e-07 Score=93.02 Aligned_cols=188 Identities=11% Similarity=0.024 Sum_probs=113.6
Q ss_pred cCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCC-C----cceeEeeeccccccCCCcHHHHH
Q 045677 9 KELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHE-F----DGSSFLADVRERCDKEGSVISLQ 83 (352)
Q Consensus 9 ~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~l~ 83 (352)
..+||.+..++.|...+..+ .-.+.++++|+.|+||||+|+.+++.+.-. . .|+..- .+
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~-ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~---------------sC 78 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSG-RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECD---------------SC 78 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhC-CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccH---------------HH
Confidence 56899999999999999853 234668899999999999999999886321 1 111100 01
Q ss_pred HHHHHH------HhcccC---CCccchhhhHHHHH-hhhCCceEEEEEeCCCC--hhhhhhhhCCCCCCCCCceEEEEeC
Q 045677 84 KQLLSD------LLMLAD---NSIRNVYDGVNMIG-SRLRHKKVLLLIDDVAD--VEQLRGLFGKRDWFGLGSMIIITTR 151 (352)
Q Consensus 84 ~~~~~~------~~~~~~---~~~~~~~~~~~~~~-~~l~~~~~llvlDd~~~--~~~~~~l~~~~~~~~~~~~iiitsr 151 (352)
..+... +..... ...+++.++.+.+. .-..++.-++|||+++. ....+.|+..+.+....+.+|++|.
T Consensus 79 ~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt 158 (824)
T PRK07764 79 VALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATT 158 (824)
T ss_pred HHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeC
Confidence 111100 000000 01111222111111 11234566899999974 4557777777776667777666554
Q ss_pred -chhHhhh-cCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchhHHHH
Q 045677 152 -DEHLLKL-HRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLAVDVL 214 (352)
Q Consensus 152 -~~~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~ 214 (352)
.+.+... ......+++..++.++...++.+.+..... ....+.+..|++.++|.+..+...
T Consensus 159 ~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv--~id~eal~lLa~~sgGdlR~Al~e 221 (824)
T PRK07764 159 EPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGV--PVEPGVLPLVIRAGGGSVRDSLSV 221 (824)
T ss_pred ChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 3344332 345678999999999999988876522221 123466788999999988655433
No 69
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.94 E-value=2.9e-07 Score=86.71 Aligned_cols=193 Identities=14% Similarity=0.073 Sum_probs=113.6
Q ss_pred CCcCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHHHH
Q 045677 7 IPKELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQKQL 86 (352)
Q Consensus 7 ~~~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 86 (352)
.=..+||.+..++.|..++..+ .-.+.++++|+.|+||||+|..++..+.-..... .-. ++. =..+..+
T Consensus 11 ~f~eivGq~~i~~~L~~~i~~~-r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~-~~p-Cg~--------C~~C~~i 79 (584)
T PRK14952 11 TFAEVVGQEHVTEPLSSALDAG-RINHAYLFSGPRGCGKTSSARILARSLNCAQGPT-ATP-CGV--------CESCVAL 79 (584)
T ss_pred cHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCC-CCc-ccc--------cHHHHHh
Confidence 3356899999999999999853 2346678999999999999999998754211000 000 000 0001111
Q ss_pred HHH------HhcccC---CCccchhhhHHHHHhh-hCCceEEEEEeCCC--ChhhhhhhhCCCCCCCCCceEEEEeCc-h
Q 045677 87 LSD------LLMLAD---NSIRNVYDGVNMIGSR-LRHKKVLLLIDDVA--DVEQLRGLFGKRDWFGLGSMIIITTRD-E 153 (352)
Q Consensus 87 ~~~------~~~~~~---~~~~~~~~~~~~~~~~-l~~~~~llvlDd~~--~~~~~~~l~~~~~~~~~~~~iiitsr~-~ 153 (352)
... ...... ...+.+.++.+.+... ..++.-++|||+++ +....+.|+..+...+..+.+|++|.+ .
T Consensus 80 ~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~ 159 (584)
T PRK14952 80 APNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPE 159 (584)
T ss_pred hcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChH
Confidence 100 000000 0111222222222111 12456699999996 445677777777766667776665543 3
Q ss_pred hHhhh-cCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchhHH
Q 045677 154 HLLKL-HRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLAVD 212 (352)
Q Consensus 154 ~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~ 212 (352)
.+... ......+.+.+++.++..+++...+..... ...++.+..|++.++|.+..+.
T Consensus 160 kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi--~i~~~al~~Ia~~s~GdlR~al 217 (584)
T PRK14952 160 KVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGV--VVDDAVYPLVIRAGGGSPRDTL 217 (584)
T ss_pred hhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHH
Confidence 33332 344678999999999999888876533221 1234677889999999886443
No 70
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.93 E-value=3.3e-08 Score=84.75 Aligned_cols=173 Identities=20% Similarity=0.261 Sum_probs=101.5
Q ss_pred cCcccccHHHH---HHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHHH
Q 045677 9 KELVGMESRLE---KLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQKQ 85 (352)
Q Consensus 9 ~~~vGR~~~l~---~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 85 (352)
+++||.+..+. .|..++. +++.+.+.+|||+|+||||||+.++..-+.+- ++++.....+.. ..-++.
T Consensus 138 ~dyvGQ~hlv~q~gllrs~ie--q~~ipSmIlWGppG~GKTtlArlia~tsk~~S---yrfvelSAt~a~----t~dvR~ 208 (554)
T KOG2028|consen 138 DDYVGQSHLVGQDGLLRSLIE--QNRIPSMILWGPPGTGKTTLARLIASTSKKHS---YRFVELSATNAK----TNDVRD 208 (554)
T ss_pred HHhcchhhhcCcchHHHHHHH--cCCCCceEEecCCCCchHHHHHHHHhhcCCCc---eEEEEEeccccc----hHHHHH
Confidence 34566555443 2333344 56778899999999999999999998766553 223222222222 122223
Q ss_pred HHHHHhcccCCCccchhhhHHHHHhhhCCceEEEEEeCCC--ChhhhhhhhCCCCCCCCCceEEE--EeCchhH---hhh
Q 045677 86 LLSDLLMLADNSIRNVYDGVNMIGSRLRHKKVLLLIDDVA--DVEQLRGLFGKRDWFGLGSMIII--TTRDEHL---LKL 158 (352)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~--~~~~~~~l~~~~~~~~~~~~iii--tsr~~~~---~~~ 158 (352)
+..+.. -...+..++++|++|+++ +..+-+.|++.. ..|..++| ||.++.. ...
T Consensus 209 ife~aq----------------~~~~l~krkTilFiDEiHRFNksQQD~fLP~V---E~G~I~lIGATTENPSFqln~aL 269 (554)
T KOG2028|consen 209 IFEQAQ----------------NEKSLTKRKTILFIDEIHRFNKSQQDTFLPHV---ENGDITLIGATTENPSFQLNAAL 269 (554)
T ss_pred HHHHHH----------------HHHhhhcceeEEEeHHhhhhhhhhhhccccee---ccCceEEEecccCCCccchhHHH
Confidence 322211 012235789999999994 444445555543 35555555 5555432 222
Q ss_pred cCcccEEecCCCCHhHHHHHHHhhh---cCCC-----CCc---hhHHHHHHHHHHHcCCCch
Q 045677 159 HRVEEVYKLEALNFDEAFRLFCLKA---FDTY-----KPL---EEYLELAKCFVKYASGLPL 209 (352)
Q Consensus 159 ~~~~~~~~l~~l~~~e~~~ll~~~~---~~~~-----~~~---~~~~~~~~~i~~~~~G~Pl 209 (352)
...+.++-|+.|+.++...++.+.. .... .+. .....+++-++..|.|-..
T Consensus 270 lSRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 270 LSRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred HhccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 3456789999999999998887622 1111 111 2455677888888888543
No 71
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.93 E-value=1.5e-08 Score=91.22 Aligned_cols=175 Identities=14% Similarity=0.174 Sum_probs=100.8
Q ss_pred CCcCcccccHHHHHHHHHHhcC-----------CCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccC
Q 045677 7 IPKELVGMESRLEKLKFLMCTG-----------SNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDK 75 (352)
Q Consensus 7 ~~~~~vGR~~~l~~l~~~l~~~-----------~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (352)
....+.|++.+++++.+.+... -..++-++|+||+|+|||++|+.++......|... . .
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v---~-~------ 189 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRV---V-G------ 189 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEec---c-h------
Confidence 3456899999999998876421 12345699999999999999999998876543111 0 0
Q ss_pred CCcHHHHHHHHHHHHhcccCCCccchhhhHHHHHhhhCCceEEEEEeCCCChh----------------hhhhhhCCCCC
Q 045677 76 EGSVISLQKQLLSDLLMLADNSIRNVYDGVNMIGSRLRHKKVLLLIDDVADVE----------------QLRGLFGKRDW 139 (352)
Q Consensus 76 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~~----------------~~~~l~~~~~~ 139 (352)
..+. ....+. ........+.......+.+|+||+++... .+..++..+..
T Consensus 190 ----~~l~----~~~~g~------~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~ 255 (364)
T TIGR01242 190 ----SELV----RKYIGE------GARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDG 255 (364)
T ss_pred ----HHHH----HHhhhH------HHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhC
Confidence 1111 111000 00111112222223567899999986431 12233322221
Q ss_pred --CCCCceEEEEeCchh-----HhhhcCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCc
Q 045677 140 --FGLGSMIIITTRDEH-----LLKLHRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLP 208 (352)
Q Consensus 140 --~~~~~~iiitsr~~~-----~~~~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 208 (352)
...+..||.||.... +....++...+.++..+.++..+++............ -....+++.+.|..
T Consensus 256 ~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~---~~~~~la~~t~g~s 328 (364)
T TIGR01242 256 FDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAED---VDLEAIAKMTEGAS 328 (364)
T ss_pred CCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCcc---CCHHHHHHHcCCCC
Confidence 123566777776432 2222244567899999999999999876643322211 12567788887764
No 72
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.93 E-value=5.2e-09 Score=79.93 Aligned_cols=114 Identities=18% Similarity=0.193 Sum_probs=70.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcCCC----cceeEeeeccccccCCCcHHHHHHHHHHHHhcccCCCccchhhhHHH
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLMSHEF----DGSSFLADVRERCDKEGSVISLQKQLLSDLLMLADNSIRNVYDGVNM 107 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (352)
.++++|+|++|+|||+++..+++...... ...+++..+.... ....+...++..+...... ......+.+.
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~~~l~~~~~~-~~~~~~l~~~ 78 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSR----TPRDFAQEILEALGLPLKS-RQTSDELRSL 78 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHS----SHHHHHHHHHHHHT-SSSS-TS-HHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCC----CHHHHHHHHHHHhCccccc-cCCHHHHHHH
Confidence 47899999999999999999998864421 2233333332222 3377888888876654444 3445555566
Q ss_pred HHhhhCCc-eEEEEEeCCCCh---hhhhhhhCCCCCCCCCceEEEEeCc
Q 045677 108 IGSRLRHK-KVLLLIDDVADV---EQLRGLFGKRDWFGLGSMIIITTRD 152 (352)
Q Consensus 108 ~~~~l~~~-~~llvlDd~~~~---~~~~~l~~~~~~~~~~~~iiitsr~ 152 (352)
+.+.+... ..+||||+++.. ..++.+..... ..+..+|+..++
T Consensus 79 ~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 79 LIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 66666544 469999999654 33444433333 567788888775
No 73
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.93 E-value=1.9e-08 Score=99.29 Aligned_cols=184 Identities=13% Similarity=0.025 Sum_probs=104.9
Q ss_pred CCcCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCC------cceeEeeeccccccCCCcHH
Q 045677 7 IPKELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEF------DGSSFLADVRERCDKEGSVI 80 (352)
Q Consensus 7 ~~~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~ 80 (352)
.-+++|||+.++..+.+.|..+ ...-++++|++|+|||+++..+++++.... ...+|..+++......
T Consensus 185 ~ld~~iGr~~ei~~~i~~l~r~--~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~---- 258 (852)
T TIGR03345 185 KIDPVLGRDDEIRQMIDILLRR--RQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGA---- 258 (852)
T ss_pred CCCcccCCHHHHHHHHHHHhcC--CcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhccc----
Confidence 3468899999999999988853 334567999999999999999999874431 1223322221111000
Q ss_pred HHHHHHHHHHhcccCCCccchhhhHHHHHhhh--CCceEEEEEeCCCChh---------hhh-hhhCCCCCCCCCceEEE
Q 045677 81 SLQKQLLSDLLMLADNSIRNVYDGVNMIGSRL--RHKKVLLLIDDVADVE---------QLR-GLFGKRDWFGLGSMIII 148 (352)
Q Consensus 81 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~llvlDd~~~~~---------~~~-~l~~~~~~~~~~~~iii 148 (352)
......+..+..+.+.+ .+.+++|+||+++... +.. .+.+.+. ....++|-
T Consensus 259 ---------------~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~--~G~l~~Ig 321 (852)
T TIGR03345 259 ---------------SVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALA--RGELRTIA 321 (852)
T ss_pred ---------------ccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhh--CCCeEEEE
Confidence 00111111112222222 2468999999995331 111 2333332 23455666
Q ss_pred EeCchhHh-------hhcCcccEEecCCCCHhHHHHHHHhhhcC--CCCCchhHHHHHHHHHHHcCCCchhHHH
Q 045677 149 TTRDEHLL-------KLHRVEEVYKLEALNFDEAFRLFCLKAFD--TYKPLEEYLELAKCFVKYASGLPLAVDV 213 (352)
Q Consensus 149 tsr~~~~~-------~~~~~~~~~~l~~l~~~e~~~ll~~~~~~--~~~~~~~~~~~~~~i~~~~~G~Pl~i~~ 213 (352)
+|..+++. ...+.+..+.+++++.++...+++..... ........++.+..+++.+.++.....+
T Consensus 322 aTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~L 395 (852)
T TIGR03345 322 ATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQL 395 (852)
T ss_pred ecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccC
Confidence 66654321 12234578999999999999997543311 1111223356677777777776655444
No 74
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.93 E-value=9e-08 Score=89.43 Aligned_cols=198 Identities=15% Similarity=0.088 Sum_probs=113.6
Q ss_pred CCCCcCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcC-CCcceeEeeeccccccCCCcHHHHH
Q 045677 5 LEIPKELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSH-EFDGSSFLADVRERCDKEGSVISLQ 83 (352)
Q Consensus 5 ~~~~~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~ 83 (352)
|..-..++|++..++.|.+.+..+ ..++.++++||+|+||||+|..+++.+.. +..... .+.. -..+
T Consensus 12 P~~F~dIIGQe~iv~~L~~aI~~~-rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~-------~Cg~----C~sC 79 (605)
T PRK05896 12 PHNFKQIIGQELIKKILVNAILNN-KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGD-------CCNS----CSVC 79 (605)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC-------CCcc----cHHH
Confidence 444467899999999999988743 23477889999999999999999988632 211000 0000 0111
Q ss_pred HHHHHHH----hcccCCCccc---hhhhHHHHHhh-hCCceEEEEEeCCCC--hhhhhhhhCCCCCCCCCceEEEEe-Cc
Q 045677 84 KQLLSDL----LMLADNSIRN---VYDGVNMIGSR-LRHKKVLLLIDDVAD--VEQLRGLFGKRDWFGLGSMIIITT-RD 152 (352)
Q Consensus 84 ~~~~~~~----~~~~~~~~~~---~~~~~~~~~~~-l~~~~~llvlDd~~~--~~~~~~l~~~~~~~~~~~~iiits-r~ 152 (352)
..+.... .......... +..+...+... ..+.+-++|||+++. ......++..+...+..+.+|++| ..
T Consensus 80 r~i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~ 159 (605)
T PRK05896 80 ESINTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEF 159 (605)
T ss_pred HHHHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCCh
Confidence 1111100 0000000111 11111111111 112344799999964 345666766665555566666544 33
Q ss_pred hhHhhh-cCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchhHHHHHH
Q 045677 153 EHLLKL-HRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLAVDVLVS 216 (352)
Q Consensus 153 ~~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~ 216 (352)
..+... ...+..+++.+++.++....+...+..... ...++.+..+++.++|.+.-+.....
T Consensus 160 ~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi--~Is~eal~~La~lS~GdlR~AlnlLe 222 (605)
T PRK05896 160 QKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKI--KIEDNAIDKIADLADGSLRDGLSILD 222 (605)
T ss_pred HhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCcHHHHHHHHH
Confidence 333322 344678999999999999988876532221 12346688899999998875544433
No 75
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.93 E-value=6.7e-08 Score=88.46 Aligned_cols=187 Identities=18% Similarity=0.158 Sum_probs=105.7
Q ss_pred cCcccccHHHH--HHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCC-cceeEeeeccccccCCCcHHHHHHH
Q 045677 9 KELVGMESRLE--KLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEF-DGSSFLADVRERCDKEGSVISLQKQ 85 (352)
Q Consensus 9 ~~~vGR~~~l~--~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~ 85 (352)
+..+|....+. .+.++..........++|+|++|+|||+|+..+++.+.+.. ...+.+... .++...
T Consensus 111 ~fi~g~~n~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~----------~~~~~~ 180 (405)
T TIGR00362 111 NFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSS----------EKFTND 180 (405)
T ss_pred ccccCCcHHHHHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEH----------HHHHHH
Confidence 34568776643 33333333222345789999999999999999999876543 223333221 222333
Q ss_pred HHHHHhcccCCCccchhhhHHHHHhhhCCceEEEEEeCCCChh----hhhhhhCCCCCC-CCCceEEEEeCchh------
Q 045677 86 LLSDLLMLADNSIRNVYDGVNMIGSRLRHKKVLLLIDDVADVE----QLRGLFGKRDWF-GLGSMIIITTRDEH------ 154 (352)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~~----~~~~l~~~~~~~-~~~~~iiitsr~~~------ 154 (352)
+...+... ... .+.+.+.+ .-+|+|||++... ..+.++..+... ..+..+|+|+....
T Consensus 181 ~~~~~~~~------~~~----~~~~~~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l 249 (405)
T TIGR00362 181 FVNALRNN------KME----EFKEKYRS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGL 249 (405)
T ss_pred HHHHHHcC------CHH----HHHHHHHh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhh
Confidence 33332211 112 22222222 3389999995321 122333332211 23456777775321
Q ss_pred ---HhhhcCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchhHHHHHHhh
Q 045677 155 ---LLKLHRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLAVDVLVSFL 218 (352)
Q Consensus 155 ---~~~~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~~l 218 (352)
+.+.+.....+.+++.+.++...++++.+..... ...++.++.|++.+.|++-.++-+...+
T Consensus 250 ~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~~--~l~~e~l~~ia~~~~~~~r~l~~~l~~l 314 (405)
T TIGR00362 250 EERLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGL--ELPDEVLEFIAKNIRSNVRELEGALNRL 314 (405)
T ss_pred hhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 1111222346899999999999999988744322 2345888999999999988776554443
No 76
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.92 E-value=4.8e-07 Score=83.86 Aligned_cols=199 Identities=14% Similarity=0.084 Sum_probs=113.0
Q ss_pred CCcCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCC-C----cceeEeeeccccccCCCcHHH
Q 045677 7 IPKELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHE-F----DGSSFLADVRERCDKEGSVIS 81 (352)
Q Consensus 7 ~~~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~ 81 (352)
.=..++|.+..++.|..++..+ .-.+.++++|++|+||||+|+.++..+... . +++.. .++......... +
T Consensus 14 ~f~diiGq~~i~~~L~~~i~~~-~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c-~nc~~i~~g~~~--d 89 (486)
T PRK14953 14 FFKEVIGQEIVVRILKNAVKLQ-RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKC-ENCVEIDKGSFP--D 89 (486)
T ss_pred cHHHccChHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCcc-HHHHHHhcCCCC--c
Confidence 3356899999999999999853 234667889999999999999999876421 0 11110 000000000000 0
Q ss_pred HHHHHHHHHhcccCCCccchhhhHHHHHhh-hCCceEEEEEeCCCCh--hhhhhhhCCCCCCCCCceEEEEe-CchhHhh
Q 045677 82 LQKQLLSDLLMLADNSIRNVYDGVNMIGSR-LRHKKVLLLIDDVADV--EQLRGLFGKRDWFGLGSMIIITT-RDEHLLK 157 (352)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~iiits-r~~~~~~ 157 (352)
+. .+........+.+..+.+.+... ..+++-++|||+++.. ...+.++..+...+....+|++| ....+..
T Consensus 90 ~~-----eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~ 164 (486)
T PRK14953 90 LI-----EIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPP 164 (486)
T ss_pred EE-----EEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHH
Confidence 00 00000000011111211111111 1245679999999643 45666666665545555555544 4333332
Q ss_pred h-cCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchhHHHHHH
Q 045677 158 L-HRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLAVDVLVS 216 (352)
Q Consensus 158 ~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~ 216 (352)
. ......+.+.+++.++...++...+..... ...++.++.+++.++|++..+.....
T Consensus 165 tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi--~id~~al~~La~~s~G~lr~al~~Ld 222 (486)
T PRK14953 165 TILSRCQRFIFSKPTKEQIKEYLKRICNEEKI--EYEEKALDLLAQASEGGMRDAASLLD 222 (486)
T ss_pred HHHHhceEEEcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 2 344568999999999999988876533221 22346788899999999876655443
No 77
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.92 E-value=1.6e-07 Score=88.11 Aligned_cols=195 Identities=17% Similarity=0.078 Sum_probs=112.9
Q ss_pred CCcCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHHHH
Q 045677 7 IPKELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQKQL 86 (352)
Q Consensus 7 ~~~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 86 (352)
.-..+||.+..++.|..++..+ .-.+.++++|++|+||||+|+.+++.+.-..... .. +.+. -..+..+
T Consensus 14 ~f~divGq~~v~~~L~~~i~~~-~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~--~~-------pcg~-C~~C~~i 82 (527)
T PRK14969 14 SFSELVGQEHVVRALTNALEQQ-RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVT--AT-------PCGV-CSACLEI 82 (527)
T ss_pred cHHHhcCcHHHHHHHHHHHHcC-CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCC--CC-------CCCC-CHHHHHH
Confidence 3356899999999999998853 2346678999999999999999998863211000 00 0000 0001111
Q ss_pred HHH----HhcccCCCccchhhhHHHHHhh----hCCceEEEEEeCCCCh--hhhhhhhCCCCCCCCCceEEEEeCch-hH
Q 045677 87 LSD----LLMLADNSIRNVYDGVNMIGSR----LRHKKVLLLIDDVADV--EQLRGLFGKRDWFGLGSMIIITTRDE-HL 155 (352)
Q Consensus 87 ~~~----~~~~~~~~~~~~~~~~~~~~~~----l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~iiitsr~~-~~ 155 (352)
... +............+..+.+... ..+++-++|||+++.. .....++..+...+..+.+|++|.+. .+
T Consensus 83 ~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~ki 162 (527)
T PRK14969 83 DSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKI 162 (527)
T ss_pred hcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhC
Confidence 000 0000000011111111111111 1245669999999744 44677777776656677777666443 22
Q ss_pred hhh-cCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchhHHHH
Q 045677 156 LKL-HRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLAVDVL 214 (352)
Q Consensus 156 ~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~ 214 (352)
... ......+++++++.++....+.+.+..... ...++.+..|++.++|.+..+...
T Consensus 163 l~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi--~~~~~al~~la~~s~Gslr~al~l 220 (527)
T PRK14969 163 PVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENI--PFDATALQLLARAAAGSMRDALSL 220 (527)
T ss_pred chhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 211 234568899999999999888776532211 123467788999999988755443
No 78
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.92 E-value=4.2e-08 Score=94.63 Aligned_cols=175 Identities=23% Similarity=0.306 Sum_probs=102.3
Q ss_pred cCcccccHHHH---HHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHHH
Q 045677 9 KELVGMESRLE---KLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQKQ 85 (352)
Q Consensus 9 ~~~vGR~~~l~---~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 85 (352)
+.|+|++..+. .|.+.+.. +..+.++|+||+|+||||+|+.+++.....|. .+. . ... .. .. .+.
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~--~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~---~ln-a--~~~--~i-~d-ir~ 95 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKA--DRVGSLILYGPPGVGKTTLARIIANHTRAHFS---SLN-A--VLA--GV-KD-LRA 95 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHhcCcce---eeh-h--hhh--hh-HH-HHH
Confidence 56899999884 56666663 34467889999999999999999987654431 111 0 000 00 01 011
Q ss_pred HHHHHhcccCCCccchhhhHHHHHhhh--CCceEEEEEeCCCC--hhhhhhhhCCCCCCCCCceEEEE--eCchh--Hh-
Q 045677 86 LLSDLLMLADNSIRNVYDGVNMIGSRL--RHKKVLLLIDDVAD--VEQLRGLFGKRDWFGLGSMIIIT--TRDEH--LL- 156 (352)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~llvlDd~~~--~~~~~~l~~~~~~~~~~~~iiit--sr~~~--~~- 156 (352)
. .......+ .++..+|+|||++. ....+.++..+. .+..++|+ |.+.. +.
T Consensus 96 ~------------------i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~ 154 (725)
T PRK13341 96 E------------------VDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNK 154 (725)
T ss_pred H------------------HHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhh
Confidence 1 11111111 24567999999964 344555555443 23344443 33321 11
Q ss_pred hhcCcccEEecCCCCHhHHHHHHHhhhcC-----CCCCchhHHHHHHHHHHHcCCCchhHHHHHH
Q 045677 157 KLHRVEEVYKLEALNFDEAFRLFCLKAFD-----TYKPLEEYLELAKCFVKYASGLPLAVDVLVS 216 (352)
Q Consensus 157 ~~~~~~~~~~l~~l~~~e~~~ll~~~~~~-----~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~ 216 (352)
........+.+++++.++...++...... ........++.++.|++.+.|+..-+..+..
T Consensus 155 aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~lln~Le 219 (725)
T PRK13341 155 ALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSLLNALE 219 (725)
T ss_pred HhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 11223467899999999999999876531 0112223457788899999998766554433
No 79
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.91 E-value=5.9e-08 Score=89.90 Aligned_cols=249 Identities=14% Similarity=0.150 Sum_probs=133.0
Q ss_pred cCcccccHHH--HHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCC-cceeEeeeccccccCCCcHHHHHHH
Q 045677 9 KELVGMESRL--EKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEF-DGSSFLADVRERCDKEGSVISLQKQ 85 (352)
Q Consensus 9 ~~~vGR~~~l--~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~ 85 (352)
+..+|..... ..+.++....+.....++|+|++|+|||+|+..+++.+...+ ...+.+... .++...
T Consensus 123 ~fv~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~----------~~~~~~ 192 (450)
T PRK00149 123 NFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTS----------EKFTND 192 (450)
T ss_pred ccccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEH----------HHHHHH
Confidence 3456766543 344444443333346789999999999999999999976653 222333222 222333
Q ss_pred HHHHHhcccCCCccchhhhHHHHHhhhCCceEEEEEeCCCChh----hhhhhhCCCCC-CCCCceEEEEeCchh------
Q 045677 86 LLSDLLMLADNSIRNVYDGVNMIGSRLRHKKVLLLIDDVADVE----QLRGLFGKRDW-FGLGSMIIITTRDEH------ 154 (352)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~~----~~~~l~~~~~~-~~~~~~iiitsr~~~------ 154 (352)
+...+... .. ..+.+.+. ..-+|+|||++... ..+.++..+.. ...+..+|+|+...+
T Consensus 193 ~~~~~~~~------~~----~~~~~~~~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l 261 (450)
T PRK00149 193 FVNALRNN------TM----EEFKEKYR-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGL 261 (450)
T ss_pred HHHHHHcC------cH----HHHHHHHh-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHH
Confidence 33332110 11 22233333 34489999995321 12333332221 123455777776431
Q ss_pred ---HhhhcCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchhHHHHHHhhcC------C--Ch
Q 045677 155 ---LLKLHRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLAVDVLVSFLFG------R--PV 223 (352)
Q Consensus 155 ---~~~~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~~l~~------~--~~ 223 (352)
+.+.......+.+.+.+.++..+++++.+.... ....++.++.|++.+.|....+.-+...+.. . ..
T Consensus 262 ~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~--~~l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~ 339 (450)
T PRK00149 262 EERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEG--IDLPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITL 339 (450)
T ss_pred HHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCH
Confidence 111222335789999999999999998774322 2234578999999999998877655444321 1 22
Q ss_pred hHHHHHHHHHcc-C----CchhHHHHHHhhh----ccCc--------HhhhhhhhhhccCCCCCCHHHHHHHHH
Q 045677 224 DQWRSTQERLKR-D----PENKILGILQISF----DGLK--------EAEKNIFLDVACFYKWENRDYVSKILD 280 (352)
Q Consensus 224 ~~~~~~~~~~~~-~----~~~~~~~~l~~~~----~~L~--------~~~~~~l~~ls~~~~~~~~~~l~~~~~ 280 (352)
......+..+.. . ....+.......| +.|. ...|++.+|++---.+.+...+...++
T Consensus 340 ~~~~~~l~~~~~~~~~~~~~~~i~~~v~~~~~i~~~~l~~~~R~~~~~~aR~iamyl~~~~~~~s~~~Ig~~fg 413 (450)
T PRK00149 340 ELAKEALKDLLAAQKKKITIENIQKVVAEYYNIKVSDLKSKSRTRNIARPRQIAMYLAKELTDLSLPEIGRAFG 413 (450)
T ss_pred HHHHHHHHHhhccCCCCCCHHHHHHHHHHHcCCCHHHHhCCCCCcccChHHHHHHHHHHHhcCCCHHHHHHHcC
Confidence 334444443311 1 1122222222222 2220 135667777766666667777766663
No 80
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.91 E-value=2.4e-07 Score=87.86 Aligned_cols=202 Identities=13% Similarity=0.128 Sum_probs=114.9
Q ss_pred CCCCcCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCC--CcceeEeeeccccccCCCcHHHH
Q 045677 5 LEIPKELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHE--FDGSSFLADVRERCDKEGSVISL 82 (352)
Q Consensus 5 ~~~~~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l 82 (352)
|..-..+||.+..++.|.+.+..+ .-.+.++++|++|+||||+|..+++.+.-. .....|.......+.. -..
T Consensus 12 P~~f~eivGQe~i~~~L~~~i~~~-ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~----C~s 86 (620)
T PRK14954 12 PSKFADITAQEHITHTIQNSLRMD-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGE----CES 86 (620)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCcc----CHH
Confidence 334467899999999999988743 234668899999999999999999876321 1001111100000000 011
Q ss_pred HHHHHHHHh----cccCCCccchhhhHHHHHhh----hCCceEEEEEeCCCCh--hhhhhhhCCCCCCCCCceEEEEe-C
Q 045677 83 QKQLLSDLL----MLADNSIRNVYDGVNMIGSR----LRHKKVLLLIDDVADV--EQLRGLFGKRDWFGLGSMIIITT-R 151 (352)
Q Consensus 83 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~----l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~iiits-r 151 (352)
+..+..... .........+++..+..... ..+.+-++|||+++.. ...+.|+..+...+..+.+|+++ +
T Consensus 87 C~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~ 166 (620)
T PRK14954 87 CRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTE 166 (620)
T ss_pred HHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCC
Confidence 111111000 00000111122222222111 1245568999999643 45677777776555666665554 3
Q ss_pred chhHhh-hcCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchhHHH
Q 045677 152 DEHLLK-LHRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLAVDV 213 (352)
Q Consensus 152 ~~~~~~-~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~ 213 (352)
...+.. .......+++.+++.++....+.+.+.... ....++.++.+++.++|...-+..
T Consensus 167 ~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~eg--i~I~~eal~~La~~s~Gdlr~al~ 227 (620)
T PRK14954 167 LHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEG--IQIDADALQLIARKAQGSMRDAQS 227 (620)
T ss_pred hhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHhCCCHHHHHH
Confidence 333333 234567899999999999988887653211 112347788899999998775544
No 81
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.90 E-value=2.8e-08 Score=97.24 Aligned_cols=152 Identities=16% Similarity=0.191 Sum_probs=89.0
Q ss_pred cCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCC------cceeEeeeccccccCCCcHHHH
Q 045677 9 KELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEF------DGSSFLADVRERCDKEGSVISL 82 (352)
Q Consensus 9 ~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l 82 (352)
++++||+.+++.+.+.|..+ ...-++++|++|+|||+++..+++++.... ...+|..++...
T Consensus 182 ~~~igr~~ei~~~~~~L~~~--~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l---------- 249 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRR--KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSL---------- 249 (731)
T ss_pred CcccCcHHHHHHHHHHHhcC--CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHH----------
Confidence 57999999999999988853 334567999999999999999999864321 223443322111
Q ss_pred HHHHHHHHhcccCCCccchhhhHHHHHhhh-CCceEEEEEeCCCCh-----------hhhhhhhCCCCCCCCCceEEEEe
Q 045677 83 QKQLLSDLLMLADNSIRNVYDGVNMIGSRL-RHKKVLLLIDDVADV-----------EQLRGLFGKRDWFGLGSMIIITT 150 (352)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~llvlDd~~~~-----------~~~~~l~~~~~~~~~~~~iiits 150 (352)
... .. -....+..+..+.+.+ ...+.+|+||+++.. +.-+.+.+.+. ....++|-+|
T Consensus 250 ----~a~----~~-~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~--~g~i~~IgaT 318 (731)
T TIGR02639 250 ----LAG----TK-YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALS--SGKLRCIGST 318 (731)
T ss_pred ----hhh----cc-ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHh--CCCeEEEEec
Confidence 100 00 0012222222233322 346889999999532 11222333332 2234555555
Q ss_pred CchhHh-------hhcCcccEEecCCCCHhHHHHHHHhhh
Q 045677 151 RDEHLL-------KLHRVEEVYKLEALNFDEAFRLFCLKA 183 (352)
Q Consensus 151 r~~~~~-------~~~~~~~~~~l~~l~~~e~~~ll~~~~ 183 (352)
..+++. ...+....+.+++++.++...+++...
T Consensus 319 t~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 319 TYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred CHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 443221 112345689999999999999998543
No 82
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.87 E-value=5.8e-07 Score=85.86 Aligned_cols=197 Identities=12% Similarity=0.113 Sum_probs=114.6
Q ss_pred CCCCcCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHH
Q 045677 5 LEIPKELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQK 84 (352)
Q Consensus 5 ~~~~~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (352)
|..-..++|.+..++.|...+..+ .-.+.++++||+|+|||++|+.++..+-.......+-. + ..+.
T Consensus 14 P~~f~dIiGQe~~v~~L~~aI~~~-rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~p-C-----------~~C~ 80 (725)
T PRK07133 14 PKTFDDIVGQDHIVQTLKNIIKSN-KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEP-C-----------QECI 80 (725)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCc-h-----------hHHH
Confidence 334456899999999999999853 23577889999999999999999987532111000000 0 0000
Q ss_pred HHHHH---HhcccCCC---ccchhhhHHHHHhh-hCCceEEEEEeCCCC--hhhhhhhhCCCCCCCCCceEEEEe-Cchh
Q 045677 85 QLLSD---LLMLADNS---IRNVYDGVNMIGSR-LRHKKVLLLIDDVAD--VEQLRGLFGKRDWFGLGSMIIITT-RDEH 154 (352)
Q Consensus 85 ~~~~~---~~~~~~~~---~~~~~~~~~~~~~~-l~~~~~llvlDd~~~--~~~~~~l~~~~~~~~~~~~iiits-r~~~ 154 (352)
..... ........ ...+..+.+.+... ..++.-++|||+++. ...+..++..+...+..+.+|++| ....
T Consensus 81 ~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~K 160 (725)
T PRK07133 81 ENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHK 160 (725)
T ss_pred HhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhh
Confidence 00000 00000000 11122222222111 124566999999964 456777777776656666655544 4444
Q ss_pred Hhhh-cCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchhHHHHHH
Q 045677 155 LLKL-HRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLAVDVLVS 216 (352)
Q Consensus 155 ~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~ 216 (352)
+... ...+..+++.+++.++....+...+..... ....+.+..++..++|.+.-+.....
T Consensus 161 Ll~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI--~id~eAl~~LA~lS~GslR~AlslLe 221 (725)
T PRK07133 161 IPLTILSRVQRFNFRRISEDEIVSRLEFILEKENI--SYEKNALKLIAKLSSGSLRDALSIAE 221 (725)
T ss_pred hhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4332 345678999999999999888875422111 12346688899999998865544433
No 83
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.86 E-value=5.9e-07 Score=83.42 Aligned_cols=195 Identities=15% Similarity=0.103 Sum_probs=116.2
Q ss_pred CCCCcCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhc-CCCcc--eeEeeeccccccCCCcHHH
Q 045677 5 LEIPKELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMS-HEFDG--SSFLADVRERCDKEGSVIS 81 (352)
Q Consensus 5 ~~~~~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~ 81 (352)
|..-+.+||-+...+.|...+..+ .-.+..+++|++|+|||++|..+++.+- ..... .+..+ .
T Consensus 10 P~~fdeiiGqe~v~~~L~~~I~~g-rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C-------------~ 75 (535)
T PRK08451 10 PKHFDELIGQESVSKTLSLALDNN-RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTC-------------I 75 (535)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCccc-------------H
Confidence 334466899999999999999853 2456778999999999999999998753 21110 00000 0
Q ss_pred HHHHHHHHH----hcccCCCccchhhhHHHHHhh----hCCceEEEEEeCCCC--hhhhhhhhCCCCCCCCCceEEEEeC
Q 045677 82 LQKQLLSDL----LMLADNSIRNVYDGVNMIGSR----LRHKKVLLLIDDVAD--VEQLRGLFGKRDWFGLGSMIIITTR 151 (352)
Q Consensus 82 l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~----l~~~~~llvlDd~~~--~~~~~~l~~~~~~~~~~~~iiitsr 151 (352)
.+..+.... ............+..+.+... ..++.-++|||+++. .+....++..+...+..+++|+++.
T Consensus 76 ~C~~~~~~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~tt 155 (535)
T PRK08451 76 QCQSALENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATT 155 (535)
T ss_pred HHHHHhhcCCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEEC
Confidence 000000000 000000001122222222110 113556999999964 4456777777766567777777765
Q ss_pred ch-hHhh-hcCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchhHHHHH
Q 045677 152 DE-HLLK-LHRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLAVDVLV 215 (352)
Q Consensus 152 ~~-~~~~-~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~ 215 (352)
+. .+.+ .......+++.+++.++....+...+..... ...++.+..|++.++|.+.-+....
T Consensus 156 d~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi--~i~~~Al~~Ia~~s~GdlR~alnlL 219 (535)
T PRK08451 156 DPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGV--SYEPEALEILARSGNGSLRDTLTLL 219 (535)
T ss_pred ChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCcHHHHHHHH
Confidence 53 2221 2234678999999999999998876532221 1234778899999999997666554
No 84
>PRK06620 hypothetical protein; Validated
Probab=98.85 E-value=6.6e-08 Score=79.96 Aligned_cols=168 Identities=13% Similarity=0.071 Sum_probs=95.5
Q ss_pred CCCCCcCcccccHH--HHHHHHHHhcCCCC--eEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcH
Q 045677 4 ELEIPKELVGMESR--LEKLKFLMCTGSND--VRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSV 79 (352)
Q Consensus 4 ~~~~~~~~vGR~~~--l~~l~~~l~~~~~~--~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (352)
.+...+.++|.... ...+.++-...... .+.+.|+|++|+|||+|++.+++.... .+... .
T Consensus 12 ~~tfd~Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~-----~~~~~------~---- 76 (214)
T PRK06620 12 KYHPDEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNA-----YIIKD------I---- 76 (214)
T ss_pred CCCchhhEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhccCC-----EEcch------h----
Confidence 33445566777443 23444444321111 266899999999999999987765431 11110 0
Q ss_pred HHHHHHHHHHHhcccCCCccchhhhHHHHHhhhCCceEEEEEeCCCChhh--hhhhhCCCCCCCCCceEEEEeCchhH--
Q 045677 80 ISLQKQLLSDLLMLADNSIRNVYDGVNMIGSRLRHKKVLLLIDDVADVEQ--LRGLFGKRDWFGLGSMIIITTRDEHL-- 155 (352)
Q Consensus 80 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~~~--~~~l~~~~~~~~~~~~iiitsr~~~~-- 155 (352)
.... +.. ...-+++|||++..++ +-.++..+. ..+..+|+|++..+.
T Consensus 77 -~~~~-------------------------~~~-~~~d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l 127 (214)
T PRK06620 77 -FFNE-------------------------EIL-EKYNAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNF 127 (214)
T ss_pred -hhch-------------------------hHH-hcCCEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCcccc
Confidence 0000 000 1224789999964332 222222222 345678888874422
Q ss_pred -----hhhcCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchhHHHHHHh
Q 045677 156 -----LKLHRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLAVDVLVSF 217 (352)
Q Consensus 156 -----~~~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~~ 217 (352)
.+.......+.+++++.++...++.+.+..... ...+++++-|++.+.|.--.+..+...
T Consensus 128 ~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l--~l~~ev~~~L~~~~~~d~r~l~~~l~~ 192 (214)
T PRK06620 128 TLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSV--TISRQIIDFLLVNLPREYSKIIEILEN 192 (214)
T ss_pred chHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHccCCHHHHHHHHHH
Confidence 122233457999999999988888776632211 233577888888888877666554443
No 85
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.85 E-value=7.3e-07 Score=83.88 Aligned_cols=196 Identities=13% Similarity=0.095 Sum_probs=113.0
Q ss_pred CcCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCC-cceeEeeeccccccCCCcHHHHHHHH
Q 045677 8 PKELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEF-DGSSFLADVRERCDKEGSVISLQKQL 86 (352)
Q Consensus 8 ~~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~ 86 (352)
-..++|.+..++.|.+.+..+ .-.+.++++|++|+|||++|..+++.+.... .... -++. -..+..+
T Consensus 15 f~dIiGQe~v~~~L~~ai~~~-ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~-pCg~----------C~sC~~i 82 (624)
T PRK14959 15 FAEVAGQETVKAILSRAAQEN-RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGE-PCNT----------CEQCRKV 82 (624)
T ss_pred HHHhcCCHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCC-CCcc----------cHHHHHH
Confidence 356799998888999888843 2257888999999999999999998763211 0000 0000 0111111
Q ss_pred HHHH----hccc---CCCccchhhhHHHHHh-hhCCceEEEEEeCCCCh--hhhhhhhCCCCCCCCCceEEEEeCc-hhH
Q 045677 87 LSDL----LMLA---DNSIRNVYDGVNMIGS-RLRHKKVLLLIDDVADV--EQLRGLFGKRDWFGLGSMIIITTRD-EHL 155 (352)
Q Consensus 87 ~~~~----~~~~---~~~~~~~~~~~~~~~~-~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~iiitsr~-~~~ 155 (352)
.... .... ....+.+..+.+.+.. -..++.-+||||+++.. .....|+..+........+|++|.+ ..+
T Consensus 83 ~~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kl 162 (624)
T PRK14959 83 TQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKF 162 (624)
T ss_pred hcCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhh
Confidence 1100 0000 0001111111111111 12345679999999643 5567777766554556666665544 333
Q ss_pred hhh-cCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCc-hhHHHHHHh
Q 045677 156 LKL-HRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLP-LAVDVLVSF 217 (352)
Q Consensus 156 ~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~P-l~i~~~~~~ 217 (352)
... ......+++++++.++....+...+..... ...++.++.|++.++|.+ .++.++-+.
T Consensus 163 l~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi--~id~eal~lIA~~s~GdlR~Al~lLeql 224 (624)
T PRK14959 163 PVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGV--DYDPAAVRLIARRAAGSVRDSMSLLGQV 224 (624)
T ss_pred hHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 322 234568899999999999888876532221 133477888999999976 455555443
No 86
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.84 E-value=1.3e-07 Score=85.56 Aligned_cols=174 Identities=14% Similarity=0.176 Sum_probs=98.4
Q ss_pred CcCcccccHHHHHHHHHHhc-----------CCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCC
Q 045677 8 PKELVGMESRLEKLKFLMCT-----------GSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKE 76 (352)
Q Consensus 8 ~~~~vGR~~~l~~l~~~l~~-----------~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (352)
.+.+.|++.+++++.+.+.. +-..++-++++||+|+|||++|+.+++.....| +....
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~----i~v~~------- 198 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATF----IRVVG------- 198 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCE----EEeeh-------
Confidence 34578999999999886632 113456699999999999999999998866432 11111
Q ss_pred CcHHHHHHHHHHHHhcccCCCccchhhhHHHHHhhhCCceEEEEEeCCCChh------------h----hhhhhCCCCC-
Q 045677 77 GSVISLQKQLLSDLLMLADNSIRNVYDGVNMIGSRLRHKKVLLLIDDVADVE------------Q----LRGLFGKRDW- 139 (352)
Q Consensus 77 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~~------------~----~~~l~~~~~~- 139 (352)
.. +.....+. ........+.......+.+|+||+++... . +..++..+..
T Consensus 199 ---~~----l~~~~~g~------~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~ 265 (389)
T PRK03992 199 ---SE----LVQKFIGE------GARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGF 265 (389)
T ss_pred ---HH----HhHhhccc------hHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhcccc
Confidence 11 11111100 00111112222224567899999996431 1 2223322221
Q ss_pred -CCCCceEEEEeCchhH-----hhhcCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCc
Q 045677 140 -FGLGSMIIITTRDEHL-----LKLHRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLP 208 (352)
Q Consensus 140 -~~~~~~iiitsr~~~~-----~~~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 208 (352)
...+..||.||..... ....++...+.+++.+.++..++++........... .....++..+.|+-
T Consensus 266 ~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~---~~~~~la~~t~g~s 337 (389)
T PRK03992 266 DPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADD---VDLEELAELTEGAS 337 (389)
T ss_pred CCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCc---CCHHHHHHHcCCCC
Confidence 1235566666654321 111245567999999999999999876633222211 22566777777643
No 87
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.83 E-value=1.4e-06 Score=82.51 Aligned_cols=196 Identities=13% Similarity=0.092 Sum_probs=114.3
Q ss_pred CCCCcCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcC-CCcceeEeeeccccccCCCcHHHHH
Q 045677 5 LEIPKELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSH-EFDGSSFLADVRERCDKEGSVISLQ 83 (352)
Q Consensus 5 ~~~~~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~ 83 (352)
|..-..++|.+..++.|.+++..+. -.+.++++|+.|+|||++|+.++..+.. +.....-+ +. -..+
T Consensus 12 P~~f~~viGq~~v~~~L~~~i~~~~-~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC----------~~-C~~C 79 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNAIKQGK-ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPC----------NE-CEIC 79 (559)
T ss_pred CCcHHhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC----------Cc-cHHH
Confidence 3444678999999999999998543 3577888999999999999999987532 11100000 00 0111
Q ss_pred HHHHHHH----hcccC---CCccchhhhHHHHHhh-hCCceEEEEEeCCCCh--hhhhhhhCCCCCCCCCceEEEEeC-c
Q 045677 84 KQLLSDL----LMLAD---NSIRNVYDGVNMIGSR-LRHKKVLLLIDDVADV--EQLRGLFGKRDWFGLGSMIIITTR-D 152 (352)
Q Consensus 84 ~~~~~~~----~~~~~---~~~~~~~~~~~~~~~~-l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~iiitsr-~ 152 (352)
..+.... ..... ...+.+.++.+.+... ..++.-++|||+++.. .....++..+...+..+.+|++|. .
T Consensus 80 ~~i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~ 159 (559)
T PRK05563 80 KAITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEP 159 (559)
T ss_pred HHHhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCCh
Confidence 1111100 00000 0011111222211111 1345679999999744 557777777765556666665543 3
Q ss_pred hhHhhh-cCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchhHHHH
Q 045677 153 EHLLKL-HRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLAVDVL 214 (352)
Q Consensus 153 ~~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~ 214 (352)
..+... ......+.+.+++.++....+...+..... ...++.+..++..++|.+......
T Consensus 160 ~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi--~i~~~al~~ia~~s~G~~R~al~~ 220 (559)
T PRK05563 160 HKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGI--EYEDEALRLIARAAEGGMRDALSI 220 (559)
T ss_pred hhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 333322 234567899999999999888876532221 123467888999999988765443
No 88
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.83 E-value=1.3e-06 Score=82.37 Aligned_cols=197 Identities=14% Similarity=0.078 Sum_probs=116.9
Q ss_pred CCCCcCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCC-C----cceeEeeeccccccCCCcH
Q 045677 5 LEIPKELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHE-F----DGSSFLADVRERCDKEGSV 79 (352)
Q Consensus 5 ~~~~~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~ 79 (352)
|..=..++|-+..++.|..++.++ .-.+.++++|+.|+|||++|+.+++.+-.. . .++... .+.........
T Consensus 12 P~~f~diiGqe~iv~~L~~~i~~~-~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~-~C~~i~~~~~~- 88 (563)
T PRK06647 12 PRDFNSLEGQDFVVETLKHSIESN-KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECS-SCKSIDNDNSL- 88 (563)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccch-HHHHHHcCCCC-
Confidence 333457899999999999999853 245678899999999999999999886321 1 111100 00000000000
Q ss_pred HHHHHHHHHHHhcccCCCccchhhhHHHH---Hhh-hCCceEEEEEeCCCC--hhhhhhhhCCCCCCCCCceEEEEeCc-
Q 045677 80 ISLQKQLLSDLLMLADNSIRNVYDGVNMI---GSR-LRHKKVLLLIDDVAD--VEQLRGLFGKRDWFGLGSMIIITTRD- 152 (352)
Q Consensus 80 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-l~~~~~llvlDd~~~--~~~~~~l~~~~~~~~~~~~iiitsr~- 152 (352)
++ ............+..+.. ... ..+++-++|||+++. ...++.++..+...+..+.+|+++.+
T Consensus 89 -dv--------~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~ 159 (563)
T PRK06647 89 -DV--------IEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEV 159 (563)
T ss_pred -Ce--------EEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCCh
Confidence 00 000000111122222211 111 134566899999964 44577787777766667777666543
Q ss_pred hhHhhh-cCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchhHHHHH
Q 045677 153 EHLLKL-HRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLAVDVLV 215 (352)
Q Consensus 153 ~~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~ 215 (352)
..+... ......+++.+++.++....+.+.+..... ...++.+..|++.++|.+..+....
T Consensus 160 ~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi--~id~eAl~lLa~~s~GdlR~alslL 221 (563)
T PRK06647 160 HKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQI--KYEDEALKWIAYKSTGSVRDAYTLF 221 (563)
T ss_pred HHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 333322 234567899999999999988876633222 2345778889999999987665443
No 89
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.83 E-value=3.8e-07 Score=83.65 Aligned_cols=183 Identities=15% Similarity=0.107 Sum_probs=101.8
Q ss_pred CCCcCcccccHHHH--HHHHHHhcC----CCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcH
Q 045677 6 EIPKELVGMESRLE--KLKFLMCTG----SNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSV 79 (352)
Q Consensus 6 ~~~~~~vGR~~~l~--~l~~~l~~~----~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (352)
...+..+|....+. .+.++.... +.....++|+|++|+|||+|++.+++.+........++. .
T Consensus 109 tFdnFv~g~~N~~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~-~---------- 177 (445)
T PRK12422 109 TFANFLVTPENDLPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVR-S---------- 177 (445)
T ss_pred cccceeeCCcHHHHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEee-H----------
Confidence 33445568777764 444443311 122467889999999999999999998765433334433 1
Q ss_pred HHHHHHHHHHHhcccCCCccchhhhHHHHHhhhCCceEEEEEeCCCChh----hhhhhhCCCCC-CCCCceEEEEeCch-
Q 045677 80 ISLQKQLLSDLLMLADNSIRNVYDGVNMIGSRLRHKKVLLLIDDVADVE----QLRGLFGKRDW-FGLGSMIIITTRDE- 153 (352)
Q Consensus 80 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~~----~~~~l~~~~~~-~~~~~~iiitsr~~- 153 (352)
..+...+...+... . ...++.... ..-+|+|||+.... ..++++..++. ...+..||+||...
T Consensus 178 ~~f~~~~~~~l~~~------~----~~~f~~~~~-~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p 246 (445)
T PRK12422 178 ELFTEHLVSAIRSG------E----MQRFRQFYR-NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAP 246 (445)
T ss_pred HHHHHHHHHHHhcc------h----HHHHHHHcc-cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCH
Confidence 22223333332210 1 122333322 34488999984321 12233322211 12355788877532
Q ss_pred h--------HhhhcCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchhHH
Q 045677 154 H--------LLKLHRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLAVD 212 (352)
Q Consensus 154 ~--------~~~~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~ 212 (352)
. +.+.+.....+.+.+++.++...++++.+.... ....++.++-|+..+.++--.+.
T Consensus 247 ~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~--~~l~~evl~~la~~~~~dir~L~ 311 (445)
T PRK12422 247 QDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALS--IRIEETALDFLIEALSSNVKSLL 311 (445)
T ss_pred HHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhcCCCHHHHH
Confidence 1 112122346889999999999999988764332 12335777778887777764443
No 90
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.83 E-value=9.9e-07 Score=81.26 Aligned_cols=200 Identities=15% Similarity=0.128 Sum_probs=113.2
Q ss_pred CCCCcCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCC------cceeEeeeccccccCCCc
Q 045677 5 LEIPKELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEF------DGSSFLADVRERCDKEGS 78 (352)
Q Consensus 5 ~~~~~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 78 (352)
|..-+.++|.+..++.|.+++..+ .-.+.++++|++|+|||++|..+++.+...- .++... ++.........
T Consensus 13 P~~~~diiGq~~~v~~L~~~i~~~-~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~-~C~~i~~~~~~ 90 (451)
T PRK06305 13 PQTFSEILGQDAVVAVLKNALRFN-RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCA-SCKEISSGTSL 90 (451)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccH-HHHHHhcCCCC
Confidence 334467899999999999999843 2346788999999999999999998763220 010000 00000000000
Q ss_pred HHHHHHHHHHHHhcccCCCccchhhhHHHHHh-hhCCceEEEEEeCCCCh--hhhhhhhCCCCCCCCCceEEEEeCc-hh
Q 045677 79 VISLQKQLLSDLLMLADNSIRNVYDGVNMIGS-RLRHKKVLLLIDDVADV--EQLRGLFGKRDWFGLGSMIIITTRD-EH 154 (352)
Q Consensus 79 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~iiitsr~-~~ 154 (352)
+ +. .+.+......+.+.+..+.+.. -..+.+-++|||+++.. ...+.++..+......+.+|+++.+ ..
T Consensus 91 --d----~~-~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~k 163 (451)
T PRK06305 91 --D----VL-EIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHK 163 (451)
T ss_pred --c----eE-EeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHh
Confidence 0 00 0000000001111111111111 11245678999999643 4456666666655566666666533 33
Q ss_pred Hhhh-cCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchhHHHHH
Q 045677 155 LLKL-HRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLAVDVLV 215 (352)
Q Consensus 155 ~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~ 215 (352)
+... ......+++.+++.++....+...+.... ....++.+..++..++|.+.-+....
T Consensus 164 l~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg--~~i~~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 164 IPGTILSRCQKMHLKRIPEETIIDKLALIAKQEG--IETSREALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred cchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3222 33466899999999999998887653211 11334778899999999886554443
No 91
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.81 E-value=7.7e-08 Score=95.34 Aligned_cols=150 Identities=15% Similarity=0.139 Sum_probs=87.9
Q ss_pred cCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCC------CcceeEeeeccccccCCCcHHHH
Q 045677 9 KELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHE------FDGSSFLADVRERCDKEGSVISL 82 (352)
Q Consensus 9 ~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l 82 (352)
++.+||+.+++.+.+.|... ...-++++|++|+|||++|..+++.+... ....+|..++...
T Consensus 179 ~~~igr~~ei~~~~~~L~r~--~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l---------- 246 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRR--TKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLL---------- 246 (821)
T ss_pred CCCCCcHHHHHHHHHHHccc--ccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHH----------
Confidence 56899999999999999853 33456799999999999999999886432 1233443322111
Q ss_pred HHHHHHHHhcccCCCccchhhhHHHHHhh-hCCceEEEEEeCCCChh---------hhhhhh-CCCCCCCCCceEEEEeC
Q 045677 83 QKQLLSDLLMLADNSIRNVYDGVNMIGSR-LRHKKVLLLIDDVADVE---------QLRGLF-GKRDWFGLGSMIIITTR 151 (352)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~llvlDd~~~~~---------~~~~l~-~~~~~~~~~~~iiitsr 151 (352)
+ .+.. -....++.+..+.+. ....+++|+||+++..- +...++ +.+. ....++|.+|.
T Consensus 247 ----~----ag~~-~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~--rg~l~~IgaTt 315 (821)
T CHL00095 247 ----L----AGTK-YRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALA--RGELQCIGATT 315 (821)
T ss_pred ----h----ccCC-CccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHh--CCCcEEEEeCC
Confidence 1 0000 011222222222222 23568999999995221 122222 2222 23456666666
Q ss_pred chhHhh-------hcCcccEEecCCCCHhHHHHHHHh
Q 045677 152 DEHLLK-------LHRVEEVYKLEALNFDEAFRLFCL 181 (352)
Q Consensus 152 ~~~~~~-------~~~~~~~~~l~~l~~~e~~~ll~~ 181 (352)
.+++.. .......+.+...+.++...++..
T Consensus 316 ~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~ 352 (821)
T CHL00095 316 LDEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFG 352 (821)
T ss_pred HHHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHH
Confidence 554321 123456788899999988887764
No 92
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.80 E-value=1.5e-06 Score=82.88 Aligned_cols=196 Identities=16% Similarity=0.139 Sum_probs=113.5
Q ss_pred CCcCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCC-CcceeEeeeccccccCCCcHHHHHHH
Q 045677 7 IPKELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHE-FDGSSFLADVRERCDKEGSVISLQKQ 85 (352)
Q Consensus 7 ~~~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~ 85 (352)
.=+.++|.+..++.|..++..+ .-.+.++++|+.|+|||++|..++..+.-. .....--++ .+ ..+..
T Consensus 15 ~f~~viGq~~~~~~L~~~i~~~-~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg---~C-------~sC~~ 83 (614)
T PRK14971 15 TFESVVGQEALTTTLKNAIATN-KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACN---EC-------ESCVA 83 (614)
T ss_pred CHHHhcCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCC---cc-------hHHHH
Confidence 3356899999999999999853 235678899999999999999988875311 100000000 00 00000
Q ss_pred HHHH----HhcccCCCccchhhhHHHHHhh----hCCceEEEEEeCCCC--hhhhhhhhCCCCCCCCCceEEEEe-Cchh
Q 045677 86 LLSD----LLMLADNSIRNVYDGVNMIGSR----LRHKKVLLLIDDVAD--VEQLRGLFGKRDWFGLGSMIIITT-RDEH 154 (352)
Q Consensus 86 ~~~~----~~~~~~~~~~~~~~~~~~~~~~----l~~~~~llvlDd~~~--~~~~~~l~~~~~~~~~~~~iiits-r~~~ 154 (352)
+... +......+.....+....+... ..+.+-++|||+++. ....+.|+..+...+..+.+|++| ....
T Consensus 84 ~~~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~k 163 (614)
T PRK14971 84 FNEQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHK 163 (614)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchh
Confidence 0000 0000000111112222222111 123455889999964 455777777776656667766554 4344
Q ss_pred Hhhh-cCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchhHHHHH
Q 045677 155 LLKL-HRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLAVDVLV 215 (352)
Q Consensus 155 ~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~ 215 (352)
+... ......+++.+++.++....+...+..... ...++.++.|++.++|...-+....
T Consensus 164 Il~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi--~i~~~al~~La~~s~gdlr~al~~L 223 (614)
T PRK14971 164 ILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGI--TAEPEALNVIAQKADGGMRDALSIF 223 (614)
T ss_pred chHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4333 345678999999999999988876532221 1234678889999999887665443
No 93
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.79 E-value=7.1e-07 Score=85.07 Aligned_cols=198 Identities=16% Similarity=0.137 Sum_probs=113.9
Q ss_pred CcCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHHHHH
Q 045677 8 PKELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQKQLL 87 (352)
Q Consensus 8 ~~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 87 (352)
-..++|.+..++.|..++..+. -.+.++++|++|+|||++|..+++.+........-.. .+.. -..+..+.
T Consensus 15 f~~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~----~Cg~----C~~C~~i~ 85 (620)
T PRK14948 15 FDELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPE----PCGK----CELCRAIA 85 (620)
T ss_pred HhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCC----CCcc----cHHHHHHh
Confidence 3568999999999999988532 3467889999999999999999988643210000000 0000 11222222
Q ss_pred HHHhc----ccCCCccchhhhHHHHHhh----hCCceEEEEEeCCCCh--hhhhhhhCCCCCCCCCceEEEEeCch-hHh
Q 045677 88 SDLLM----LADNSIRNVYDGVNMIGSR----LRHKKVLLLIDDVADV--EQLRGLFGKRDWFGLGSMIIITTRDE-HLL 156 (352)
Q Consensus 88 ~~~~~----~~~~~~~~~~~~~~~~~~~----l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~iiitsr~~-~~~ 156 (352)
..... ........++...+.+... ..++.-++|||+++.. +....++..+......+.+|++|.+. .+.
T Consensus 86 ~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~ll 165 (620)
T PRK14948 86 AGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVL 165 (620)
T ss_pred cCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhh
Confidence 11100 0000111122222222111 1245569999999743 45777777766555666666555433 333
Q ss_pred hh-cCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchhHHHHHH
Q 045677 157 KL-HRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLAVDVLVS 216 (352)
Q Consensus 157 ~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~ 216 (352)
.. ......+.+.+++.++....+...+..... ...++.+..+++.++|.+..+.....
T Consensus 166 pTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi--~is~~al~~La~~s~G~lr~A~~lLe 224 (620)
T PRK14948 166 PTIISRCQRFDFRRIPLEAMVQHLSEIAEKESI--EIEPEALTLVAQRSQGGLRDAESLLD 224 (620)
T ss_pred HHHHhheeEEEecCCCHHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 22 334667889999999988877765532111 12236688999999999876654444
No 94
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.77 E-value=1.2e-07 Score=81.29 Aligned_cols=153 Identities=17% Similarity=0.180 Sum_probs=80.9
Q ss_pred CcccccHHHHHHHH---HHhc----------CCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCC--cceeEeeecccccc
Q 045677 10 ELVGMESRLEKLKF---LMCT----------GSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEF--DGSSFLADVRERCD 74 (352)
Q Consensus 10 ~~vGR~~~l~~l~~---~l~~----------~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~--~~~~~~~~~~~~~~ 74 (352)
.++|.+...+++.+ +... ..+....++++||+|+|||++|+.++..+.... ....++. +..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~-~~~--- 82 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIE-VER--- 82 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEE-ecH---
Confidence 46777766655543 3211 122346688999999999999999988753221 1111111 000
Q ss_pred CCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHHhhhCCceEEEEEeCCCCh----------hhhhhhhCCCCCCCCCc
Q 045677 75 KEGSVISLQKQLLSDLLMLADNSIRNVYDGVNMIGSRLRHKKVLLLIDDVADV----------EQLRGLFGKRDWFGLGS 144 (352)
Q Consensus 75 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~----------~~~~~l~~~~~~~~~~~ 144 (352)
.+ +.....+.. .......+... ..-+|+||+++.. +.++.++..+.......
T Consensus 83 -----~~----l~~~~~g~~------~~~~~~~~~~a---~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~ 144 (261)
T TIGR02881 83 -----AD----LVGEYIGHT------AQKTREVIKKA---LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEF 144 (261)
T ss_pred -----HH----hhhhhccch------HHHHHHHHHhc---cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCE
Confidence 11 111111000 01111122211 2348999999642 23455555544334444
Q ss_pred eEEEEeCchhHh-------hh-cCcccEEecCCCCHhHHHHHHHhhhc
Q 045677 145 MIIITTRDEHLL-------KL-HRVEEVYKLEALNFDEAFRLFCLKAF 184 (352)
Q Consensus 145 ~iiitsr~~~~~-------~~-~~~~~~~~l~~l~~~e~~~ll~~~~~ 184 (352)
.+|+++...... .. .+....+.+++++.++..+++.+.+.
T Consensus 145 ~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 145 VLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVK 192 (261)
T ss_pred EEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHH
Confidence 566665433221 11 12335689999999999999987763
No 95
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.75 E-value=2e-07 Score=92.66 Aligned_cols=152 Identities=12% Similarity=0.104 Sum_probs=88.2
Q ss_pred CcCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCC------cceeEeeeccccccCCCcHHH
Q 045677 8 PKELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEF------DGSSFLADVRERCDKEGSVIS 81 (352)
Q Consensus 8 ~~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 81 (352)
-+++|||+.+++.+.+.|..+ ....++++|++|+|||+++..+++++.... ...+|..++..
T Consensus 172 ~~~~igr~~ei~~~~~~l~r~--~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~---------- 239 (852)
T TIGR03346 172 LDPVIGRDEEIRRTIQVLSRR--TKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGA---------- 239 (852)
T ss_pred CCcCCCcHHHHHHHHHHHhcC--CCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHH----------
Confidence 357999999999999999853 335566899999999999999998865431 12233322111
Q ss_pred HHHHHHHHHhcccCCCccchhhhHHHHHhhh--CCceEEEEEeCCCChh----------hhhhhhCCCCCCCCCceEEEE
Q 045677 82 LQKQLLSDLLMLADNSIRNVYDGVNMIGSRL--RHKKVLLLIDDVADVE----------QLRGLFGKRDWFGLGSMIIIT 149 (352)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~llvlDd~~~~~----------~~~~l~~~~~~~~~~~~iiit 149 (352)
+.. +.. -....+..+..+...+ .+.+++|+||+++... ..+.+.+.+. ....++|-+
T Consensus 240 ----l~a----~~~-~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~--~g~i~~Iga 308 (852)
T TIGR03346 240 ----LIA----GAK-YRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALA--RGELHCIGA 308 (852)
T ss_pred ----Hhh----cch-hhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhh--cCceEEEEe
Confidence 100 000 0011222222222222 2468999999996332 1222222222 234455555
Q ss_pred eCchhHhh-------hcCcccEEecCCCCHhHHHHHHHhh
Q 045677 150 TRDEHLLK-------LHRVEEVYKLEALNFDEAFRLFCLK 182 (352)
Q Consensus 150 sr~~~~~~-------~~~~~~~~~l~~l~~~e~~~ll~~~ 182 (352)
|..+++.. ..+....+.++..+.++...++...
T Consensus 309 Tt~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~ 348 (852)
T TIGR03346 309 TTLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGL 348 (852)
T ss_pred CcHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHH
Confidence 55443311 1234567889999999999988754
No 96
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.74 E-value=1.7e-06 Score=82.28 Aligned_cols=190 Identities=12% Similarity=0.055 Sum_probs=111.6
Q ss_pred CCCCcCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcC-CC----cceeEeeeccccccCCCcH
Q 045677 5 LEIPKELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSH-EF----DGSSFLADVRERCDKEGSV 79 (352)
Q Consensus 5 ~~~~~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~ 79 (352)
|..-..+||.+...+.|...+..+ .-.+.++++|+.|+||||+|..++..+.. +. .++..
T Consensus 12 P~~f~~iiGq~~v~~~L~~~i~~~-~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c-------------- 76 (576)
T PRK14965 12 PQTFSDLTGQEHVSRTLQNAIDTG-RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVC-------------- 76 (576)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCcc--------------
Confidence 334467899999999999998853 23467789999999999999999987532 11 01110
Q ss_pred HHHHHHHHHH-------HhcccCCCccchhhhHHHHHhh-hCCceEEEEEeCCCC--hhhhhhhhCCCCCCCCCceEEEE
Q 045677 80 ISLQKQLLSD-------LLMLADNSIRNVYDGVNMIGSR-LRHKKVLLLIDDVAD--VEQLRGLFGKRDWFGLGSMIIIT 149 (352)
Q Consensus 80 ~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~-l~~~~~llvlDd~~~--~~~~~~l~~~~~~~~~~~~iiit 149 (352)
..+..+... +........+++.++...+... ..++.-++|||+++. ....+.|+..+.+....+.+|++
T Consensus 77 -~~c~~i~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~ 155 (576)
T PRK14965 77 -PPCVEITEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFA 155 (576)
T ss_pred -HHHHHHhcCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEE
Confidence 011111000 0000000111122222211111 123455899999964 34567777777665667776655
Q ss_pred eC-chhHhhh-cCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchhHH
Q 045677 150 TR-DEHLLKL-HRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLAVD 212 (352)
Q Consensus 150 sr-~~~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~ 212 (352)
|. ...+... ......+++.+++.++....+...+..... ...++.+..+++.++|....+.
T Consensus 156 t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi--~i~~~al~~la~~a~G~lr~al 218 (576)
T PRK14965 156 TTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGI--SISDAALALVARKGDGSMRDSL 218 (576)
T ss_pred eCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHcCCCHHHHH
Confidence 54 3444332 344667889999999998888775532221 1234678889999999875443
No 97
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.73 E-value=8.1e-07 Score=73.00 Aligned_cols=182 Identities=16% Similarity=0.146 Sum_probs=105.4
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHHHHHHHHhcccCCCcc-chhhhHHHH
Q 045677 30 NDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQKQLLSDLLMLADNSIR-NVYDGVNMI 108 (352)
Q Consensus 30 ~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~ 108 (352)
.+..++.|+|+-|+|||.+.+.+...+..+-...+.+ ..+......+...+...+...+..... ..+.....+
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i------~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L 122 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVI------DKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDREL 122 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEe------cCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHH
Confidence 4457999999999999999995555554332222222 222222256666666665552222211 222222333
Q ss_pred Hhhh-CCc-eEEEEEeCCCCh--hh---hhhhhCCCCCCCCCceEEEEeCchh--------Hhhhc-CcccEEecCCCCH
Q 045677 109 GSRL-RHK-KVLLLIDDVADV--EQ---LRGLFGKRDWFGLGSMIIITTRDEH--------LLKLH-RVEEVYKLEALNF 172 (352)
Q Consensus 109 ~~~l-~~~-~~llvlDd~~~~--~~---~~~l~~~~~~~~~~~~iiitsr~~~--------~~~~~-~~~~~~~l~~l~~ 172 (352)
.+.. .++ ++++++|+.++. +. ++-+...-...+....|+.....+- ..... +..-.|.++|++.
T Consensus 123 ~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~ 202 (269)
T COG3267 123 AALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTE 202 (269)
T ss_pred HHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcCh
Confidence 3332 344 499999999532 22 3333333333333345665544221 11111 1222389999999
Q ss_pred hHHHHHHHhhhcCCCCC-chhHHHHHHHHHHHcCCCchhHHHHHHh
Q 045677 173 DEAFRLFCLKAFDTYKP-LEEYLELAKCFVKYASGLPLAVDVLVSF 217 (352)
Q Consensus 173 ~e~~~ll~~~~~~~~~~-~~~~~~~~~~i~~~~~G~Pl~i~~~~~~ 217 (352)
++...+++.+..+...+ +-..++.+..|+..++|.|..|..++..
T Consensus 203 ~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 203 AETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred HHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHHH
Confidence 99999998876544322 3345678899999999999999887654
No 98
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.73 E-value=2e-06 Score=70.98 Aligned_cols=122 Identities=17% Similarity=0.228 Sum_probs=73.9
Q ss_pred CCCCcCcccccHHHHHHHHHHhc--CCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHH
Q 045677 5 LEIPKELVGMESRLEKLKFLMCT--GSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISL 82 (352)
Q Consensus 5 ~~~~~~~vGR~~~l~~l~~~l~~--~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 82 (352)
+..-+.++|-+.+.+.|.+.... .+.+..-|++||+.|+|||++++.+........-..+-+.
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~--------------- 87 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVS--------------- 87 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEEC---------------
Confidence 33446789999999998775553 2345677899999999999999999988766542222221
Q ss_pred HHHHHHHHhcccCCCccchhhhHHHHHhhhCCceEEEEEeCC---CChh---hhhhhhC-CCCCCCCCceEEEEeCchhH
Q 045677 83 QKQLLSDLLMLADNSIRNVYDGVNMIGSRLRHKKVLLLIDDV---ADVE---QLRGLFG-KRDWFGLGSMIIITTRDEHL 155 (352)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~---~~~~---~~~~l~~-~~~~~~~~~~iiitsr~~~~ 155 (352)
......+..+.+.++ -...+++|++||+ .... .++.++. .+...+.+..|..||....+
T Consensus 88 ------------k~~L~~l~~l~~~l~--~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHL 153 (249)
T PF05673_consen 88 ------------KEDLGDLPELLDLLR--DRPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHL 153 (249)
T ss_pred ------------HHHhccHHHHHHHHh--cCCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhc
Confidence 001111122222222 1357899999998 2223 3444442 23344556666667654444
No 99
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.69 E-value=5.6e-07 Score=79.72 Aligned_cols=150 Identities=17% Similarity=0.196 Sum_probs=85.4
Q ss_pred CCCCcCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHH
Q 045677 5 LEIPKELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQK 84 (352)
Q Consensus 5 ~~~~~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (352)
|..-+.++|.+...+.+..++..+ .....++++|++|+|||+++..+++.....+ ..+ +... .. .....
T Consensus 17 P~~~~~~~~~~~~~~~l~~~~~~~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~~---~~i-~~~~----~~--~~~i~ 85 (316)
T PHA02544 17 PSTIDECILPAADKETFKSIVKKG-RIPNMLLHSPSPGTGKTTVAKALCNEVGAEV---LFV-NGSD----CR--IDFVR 85 (316)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhcC-CCCeEEEeeCcCCCCHHHHHHHHHHHhCccc---eEe-ccCc----cc--HHHHH
Confidence 344467899999999999999853 2356777899999999999999988764321 112 1111 01 11111
Q ss_pred HHHHHHhcccCCCccchhhhHHHHHhhhCCceEEEEEeCCCCh---hhhhhhhCCCCCCCCCceEEEEeCchh-Hhh-hc
Q 045677 85 QLLSDLLMLADNSIRNVYDGVNMIGSRLRHKKVLLLIDDVADV---EQLRGLFGKRDWFGLGSMIIITTRDEH-LLK-LH 159 (352)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~---~~~~~l~~~~~~~~~~~~iiitsr~~~-~~~-~~ 159 (352)
..+..+..... ..+.+-++|||+++.. +....+...+.....++++|+|+.... +.+ ..
T Consensus 86 ~~l~~~~~~~~----------------~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~ 149 (316)
T PHA02544 86 NRLTRFASTVS----------------LTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLR 149 (316)
T ss_pred HHHHHHHHhhc----------------ccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHH
Confidence 11111110000 1134558999999644 222233332333356778888876432 111 12
Q ss_pred CcccEEecCCCCHhHHHHHHHh
Q 045677 160 RVEEVYKLEALNFDEAFRLFCL 181 (352)
Q Consensus 160 ~~~~~~~l~~l~~~e~~~ll~~ 181 (352)
.....+.++..+.++..+++..
T Consensus 150 sR~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 150 SRCRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred hhceEEEeCCCCHHHHHHHHHH
Confidence 3345677777888877766543
No 100
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.68 E-value=2.5e-07 Score=91.78 Aligned_cols=49 Identities=12% Similarity=0.209 Sum_probs=41.5
Q ss_pred CcCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcC
Q 045677 8 PKELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSH 58 (352)
Q Consensus 8 ~~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~ 58 (352)
-++++||+.+++.+.+.|... ....++++|++|+|||+++..++..+..
T Consensus 177 l~~vigr~~ei~~~i~iL~r~--~~~n~lL~G~pGvGKT~l~~~la~~i~~ 225 (857)
T PRK10865 177 LDPVIGRDEEIRRTIQVLQRR--TKNNPVLIGEPGVGKTAIVEGLAQRIIN 225 (857)
T ss_pred CCcCCCCHHHHHHHHHHHhcC--CcCceEEECCCCCCHHHHHHHHHHHhhc
Confidence 357999999999999999853 3356779999999999999999998754
No 101
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.66 E-value=1.7e-06 Score=76.22 Aligned_cols=93 Identities=11% Similarity=0.072 Sum_probs=64.3
Q ss_pred ceEEEEEeCCC--ChhhhhhhhCCCCCCCCCceEEEEeCch-hHhhh-cCcccEEecCCCCHhHHHHHHHhhhcCCCCCc
Q 045677 115 KKVLLLIDDVA--DVEQLRGLFGKRDWFGLGSMIIITTRDE-HLLKL-HRVEEVYKLEALNFDEAFRLFCLKAFDTYKPL 190 (352)
Q Consensus 115 ~~~llvlDd~~--~~~~~~~l~~~~~~~~~~~~iiitsr~~-~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~ 190 (352)
..-++|||+++ +.+....++..+.+.+.++.+|++|.+. .+.+. ......+.+.+++.+++.+.+.+... . .
T Consensus 106 ~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~-~-~-- 181 (328)
T PRK05707 106 GRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALP-E-S-- 181 (328)
T ss_pred CCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhcc-c-C--
Confidence 34456789997 4566788888877767778877777654 33333 34567899999999999999987531 1 1
Q ss_pred hhHHHHHHHHHHHcCCCchhHHH
Q 045677 191 EEYLELAKCFVKYASGLPLAVDV 213 (352)
Q Consensus 191 ~~~~~~~~~i~~~~~G~Pl~i~~ 213 (352)
.++....+...++|.|.....
T Consensus 182 --~~~~~~~~l~la~Gsp~~A~~ 202 (328)
T PRK05707 182 --DERERIELLTLAGGSPLRALQ 202 (328)
T ss_pred --ChHHHHHHHHHcCCCHHHHHH
Confidence 124456678899999975443
No 102
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.66 E-value=7.4e-07 Score=79.45 Aligned_cols=184 Identities=17% Similarity=0.134 Sum_probs=104.3
Q ss_pred CCcCcccccHHHHH-H-HHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHH
Q 045677 7 IPKELVGMESRLEK-L-KFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQK 84 (352)
Q Consensus 7 ~~~~~vGR~~~l~~-l-~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (352)
..+..+|-...+.. + ..+-...+.....++|||+.|.|||.|++.+.+...+......++. .+. .....
T Consensus 86 FdnFv~g~~N~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y----~~s-----e~f~~ 156 (408)
T COG0593 86 FDNFVVGPSNRLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVY----LTS-----EDFTN 156 (408)
T ss_pred hhheeeCCchHHHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEe----ccH-----HHHHH
Confidence 33445677666642 2 2233333335788999999999999999999999777665433332 111 22333
Q ss_pred HHHHHHhcccCCCccchhhhHHHHHhhhCCceEEEEEeCCCCh----hhhhhhhCCCCCC-CCCceEEEEeCch------
Q 045677 85 QLLSDLLMLADNSIRNVYDGVNMIGSRLRHKKVLLLIDDVADV----EQLRGLFGKRDWF-GLGSMIIITTRDE------ 153 (352)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~----~~~~~l~~~~~~~-~~~~~iiitsr~~------ 153 (352)
.+...+.. ...+.+++.. .-=+++|||++-. ..-++++..++.. ..+.+||+|++..
T Consensus 157 ~~v~a~~~----------~~~~~Fk~~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~ 224 (408)
T COG0593 157 DFVKALRD----------NEMEKFKEKY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNG 224 (408)
T ss_pred HHHHHHHh----------hhHHHHHHhh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhcc
Confidence 33333222 1122344443 2238999999422 1133444433321 2344899998643
Q ss_pred ---hHhhhcCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchhHHH
Q 045677 154 ---HLLKLHRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLAVDV 213 (352)
Q Consensus 154 ---~~~~~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~ 213 (352)
.+.+.....-.+.+.+.+.+....++.+.+...... ..+++..-++.....+-.-++.
T Consensus 225 ~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~--i~~ev~~~la~~~~~nvReLeg 285 (408)
T COG0593 225 LEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDRGIE--IPDEVLEFLAKRLDRNVRELEG 285 (408)
T ss_pred ccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHhhccHHHHHH
Confidence 233334556789999999999999998865332221 1235555565555555444443
No 103
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.64 E-value=1e-07 Score=92.52 Aligned_cols=151 Identities=17% Similarity=0.189 Sum_probs=86.5
Q ss_pred cCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCC------cceeEeeeccccccCCCcHHHH
Q 045677 9 KELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEF------DGSSFLADVRERCDKEGSVISL 82 (352)
Q Consensus 9 ~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l 82 (352)
++++||+.+++++.+.|... ...-++++|++|+|||++|..+++.+.... ...+|..+.
T Consensus 186 ~~liGR~~ei~~~i~iL~r~--~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~------------- 250 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRR--RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI------------- 250 (758)
T ss_pred CcCcCCCHHHHHHHHHHhcc--CCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccH-------------
Confidence 46899999999999998863 234567899999999999999998753321 122222111
Q ss_pred HHHHHHHHhcccCCCccchhhhHHHHHhhh-CCceEEEEEeCCCCh----------hhhhh-hhCCCCCCCCCceEEEEe
Q 045677 83 QKQLLSDLLMLADNSIRNVYDGVNMIGSRL-RHKKVLLLIDDVADV----------EQLRG-LFGKRDWFGLGSMIIITT 150 (352)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~llvlDd~~~~----------~~~~~-l~~~~~~~~~~~~iiits 150 (352)
..++. +. .-....+.....+...+ ...+.+|+||+++.. .+... +.+.+. ....++|-+|
T Consensus 251 -~~lla----G~-~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~--~g~i~vIgAT 322 (758)
T PRK11034 251 -GSLLA----GT-KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGST 322 (758)
T ss_pred -HHHhc----cc-chhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh--CCCeEEEecC
Confidence 11110 00 00112222222222222 346789999999532 12222 222222 2344555555
Q ss_pred CchhHh-------hhcCcccEEecCCCCHhHHHHHHHhh
Q 045677 151 RDEHLL-------KLHRVEEVYKLEALNFDEAFRLFCLK 182 (352)
Q Consensus 151 r~~~~~-------~~~~~~~~~~l~~l~~~e~~~ll~~~ 182 (352)
..+++. ...+....+.+++.+.++...+++..
T Consensus 323 t~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~ 361 (758)
T PRK11034 323 TYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGL 361 (758)
T ss_pred ChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHH
Confidence 544321 11234568999999999999998854
No 104
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.61 E-value=4.5e-06 Score=73.14 Aligned_cols=193 Identities=13% Similarity=0.082 Sum_probs=110.0
Q ss_pred cCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHh-cCC--------------CcceeEeeeccccc
Q 045677 9 KELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLM-SHE--------------FDGSSFLADVRERC 73 (352)
Q Consensus 9 ~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~-~~~--------------~~~~~~~~~~~~~~ 73 (352)
..++|.+...+.|.+.+..+ .-.+..+++|+.|+||+++|..+++.+ +.. ++...|+......
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~-rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~- 81 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQN-RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQH- 81 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhC-CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccc-
Confidence 36789999999999998843 235889999999999999999998875 222 1111222100000
Q ss_pred cCCCcHHHHHHHHHHHHhcccCC-CccchhhhHHHHHhhh-----CCceEEEEEeCCCC--hhhhhhhhCCCCCCCCCce
Q 045677 74 DKEGSVISLQKQLLSDLLMLADN-SIRNVYDGVNMIGSRL-----RHKKVLLLIDDVAD--VEQLRGLFGKRDWFGLGSM 145 (352)
Q Consensus 74 ~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l-----~~~~~llvlDd~~~--~~~~~~l~~~~~~~~~~~~ 145 (352)
... . .-............. ..-.++ .+..+...+ .+.+-++|||+++. ......++..+.+.+ .+.
T Consensus 82 ~g~-~---~~~~~~~~~~~~~~~~~~I~id-~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~ 155 (314)
T PRK07399 82 QGK-L---ITASEAEEAGLKRKAPPQIRLE-QIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGT 155 (314)
T ss_pred ccc-c---cchhhhhhccccccccccCcHH-HHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCe
Confidence 000 0 000000000000000 000111 122233332 24567999999964 345667777776555 555
Q ss_pred EEEEe-CchhHhhh-cCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchhHHHH
Q 045677 146 IIITT-RDEHLLKL-HRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLAVDVL 214 (352)
Q Consensus 146 iiits-r~~~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~ 214 (352)
+|+++ ..+.+.+. ......+.+.+++.++..+++.+.... ... ......++..++|.|......
T Consensus 156 fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~--~~~---~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 156 LILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDE--EIL---NINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred EEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcc--ccc---hhHHHHHHHHcCCCHHHHHHH
Confidence 55544 44444443 345678999999999999999886521 111 112467889999999766543
No 105
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.59 E-value=3.6e-07 Score=79.03 Aligned_cols=167 Identities=18% Similarity=0.261 Sum_probs=100.6
Q ss_pred CCCcCcccccHHHHHHHHHHhcCCCCeEE-EEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHH
Q 045677 6 EIPKELVGMESRLEKLKFLMCTGSNDVRT-IGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQK 84 (352)
Q Consensus 6 ~~~~~~vGR~~~l~~l~~~l~~~~~~~~~-v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (352)
...+.+.+|+.++..|..++.......+. |.|+|.+|+|||.+++++.+....+ .+|+..... ..+..++.
T Consensus 3 ~l~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~---~vw~n~~ec-----ft~~~lle 74 (438)
T KOG2543|consen 3 VLEPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLE---NVWLNCVEC-----FTYAILLE 74 (438)
T ss_pred ccccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCCc---ceeeehHHh-----ccHHHHHH
Confidence 45678999999999999999975543444 5899999999999999999887333 567653222 22266777
Q ss_pred HHHHHHhcccCCC-c-----cchhhhHHHHHh--hhC--CceEEEEEeCCCChhhhhhh--------hCCCCCCCCCceE
Q 045677 85 QLLSDLLMLADNS-I-----RNVYDGVNMIGS--RLR--HKKVLLLIDDVADVEQLRGL--------FGKRDWFGLGSMI 146 (352)
Q Consensus 85 ~~~~~~~~~~~~~-~-----~~~~~~~~~~~~--~l~--~~~~llvlDd~~~~~~~~~l--------~~~~~~~~~~~~i 146 (352)
.++......+... . .........+.. ... ++.++||+|+++...++... ...++ .....
T Consensus 75 ~IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~---~~~i~ 151 (438)
T KOG2543|consen 75 KILNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLN---EPTIV 151 (438)
T ss_pred HHHHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhC---CCceE
Confidence 7777653111111 1 223333444443 122 46899999999765543221 12222 22334
Q ss_pred EEEeCch---hHhh--hcCcccEEecCCCCHhHHHHHHHhhh
Q 045677 147 IITTRDE---HLLK--LHRVEEVYKLEALNFDEAFRLFCLKA 183 (352)
Q Consensus 147 iitsr~~---~~~~--~~~~~~~~~l~~l~~~e~~~ll~~~~ 183 (352)
|+++-.. .... ..-...++.++..+.+|...++.+..
T Consensus 152 iils~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~ 193 (438)
T KOG2543|consen 152 IILSAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRDN 193 (438)
T ss_pred EEEeccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcCC
Confidence 4444322 1111 11123467789999999999886543
No 106
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.57 E-value=1.4e-06 Score=80.62 Aligned_cols=159 Identities=17% Similarity=0.278 Sum_probs=88.8
Q ss_pred cCcccccHHHHHHHHHHhc-----------CCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCc-----ceeEeeecccc
Q 045677 9 KELVGMESRLEKLKFLMCT-----------GSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFD-----GSSFLADVRER 72 (352)
Q Consensus 9 ~~~vGR~~~l~~l~~~l~~-----------~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~-----~~~~~~~~~~~ 72 (352)
..+.|.+.+++++.+.+.. +-..++-++++||+|+|||++|+.+++.+..... ...|+. +...
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~-v~~~ 260 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLN-IKGP 260 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEe-ccch
Confidence 4467899999988876531 1223566999999999999999999998765521 122221 1110
Q ss_pred ccCCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHHhh-hCCceEEEEEeCCCChh---------h-----hhhhhCCC
Q 045677 73 CDKEGSVISLQKQLLSDLLMLADNSIRNVYDGVNMIGSR-LRHKKVLLLIDDVADVE---------Q-----LRGLFGKR 137 (352)
Q Consensus 73 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~llvlDd~~~~~---------~-----~~~l~~~~ 137 (352)
.++..+.+.. ...+.......+.. ..+++++|+||+++... + +..++..+
T Consensus 261 ------------eLl~kyvGet---e~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~L 325 (512)
T TIGR03689 261 ------------ELLNKYVGET---ERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSEL 325 (512)
T ss_pred ------------hhcccccchH---HHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHh
Confidence 1111100000 00111122222222 23578999999996321 1 23444443
Q ss_pred CCCC--CCceEEEEeCchhH-----hhhcCcccEEecCCCCHhHHHHHHHhhh
Q 045677 138 DWFG--LGSMIIITTRDEHL-----LKLHRVEEVYKLEALNFDEAFRLFCLKA 183 (352)
Q Consensus 138 ~~~~--~~~~iiitsr~~~~-----~~~~~~~~~~~l~~l~~~e~~~ll~~~~ 183 (352)
.... .+..+|.||..... ....++...++++..+.++..++|....
T Consensus 326 Dgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 326 DGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred cccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 3211 33445555543322 1112456679999999999999998876
No 107
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.55 E-value=5.3e-06 Score=73.83 Aligned_cols=206 Identities=14% Similarity=0.148 Sum_probs=117.7
Q ss_pred CCCcCcccccHHHHHHHHHHhc--CCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcc-eeEeeeccccccCCCcHHHH
Q 045677 6 EIPKELVGMESRLEKLKFLMCT--GSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDG-SSFLADVRERCDKEGSVISL 82 (352)
Q Consensus 6 ~~~~~~vGR~~~l~~l~~~l~~--~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l 82 (352)
..+...+||+.|+..+.+|+.. .......+.|.|.+|+|||.+...++.+....... ...+.++.........|..+
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI 226 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKI 226 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHH
Confidence 3567899999999999999886 23445778899999999999999999887666544 22223332223333333444
Q ss_pred HHHHHHHHhcccCCCccchhhhHHHHHhhhCC--ceEEEEEeCCCChhh--hhhhhCCCCCC-CCCceEEEEeCc-----
Q 045677 83 QKQLLSDLLMLADNSIRNVYDGVNMIGSRLRH--KKVLLLIDDVADVEQ--LRGLFGKRDWF-GLGSMIIITTRD----- 152 (352)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~llvlDd~~~~~~--~~~l~~~~~~~-~~~~~iiitsr~----- 152 (352)
+..++........ . .+....+.....+ ..+|+|+|+.+.... -..+...+.+. -.++++|+..--
T Consensus 227 ~~~~~q~~~s~~~----~-~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDl 301 (529)
T KOG2227|consen 227 FSSLLQDLVSPGT----G-MQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDL 301 (529)
T ss_pred HHHHHHHhcCCch----h-HHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhH
Confidence 4444333222221 1 4444555555433 478999999864321 11111111111 124444432211
Q ss_pred -hhHhhhc-----CcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchhHHHHHHh
Q 045677 153 -EHLLKLH-----RVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLAVDVLVSF 217 (352)
Q Consensus 153 -~~~~~~~-----~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~~ 217 (352)
+..++.. -....+..+|.+.++..+++.++.... .........++.+++++.|.---+..+...
T Consensus 302 TdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~-~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv 371 (529)
T KOG2227|consen 302 TDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEE-STSIFLNAAIELCARKVAAPSGDLRKALDV 371 (529)
T ss_pred HHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcc-cccccchHHHHHHHHHhccCchhHHHHHHH
Confidence 1111111 123568889999999999999887332 222233445666666666665555544333
No 108
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.54 E-value=7.1e-06 Score=71.71 Aligned_cols=180 Identities=13% Similarity=0.064 Sum_probs=99.2
Q ss_pred HHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeec-cc--cccCCCcHHHHHHHHHHHHhccc
Q 045677 18 LEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADV-RE--RCDKEGSVISLQKQLLSDLLMLA 94 (352)
Q Consensus 18 l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~l~~~~~~~~~~~~ 94 (352)
.+.|...+..+ .-++.++++|+.|+||+++|..+++.+--......-.+.. .- ....++. . ++.. ....
T Consensus 13 ~~~l~~~~~~~-rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~-~-----~i~~-~p~~ 84 (319)
T PRK08769 13 YDQTVAALDAG-RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDL-Q-----LVSF-IPNR 84 (319)
T ss_pred HHHHHHHHHcC-CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCE-E-----EEec-CCCc
Confidence 35556655532 2356788999999999999999998752221100000000 00 0000000 0 0000 0000
Q ss_pred CCC---ccchhhhHHHHHhhh-----CCceEEEEEeCCCC--hhhhhhhhCCCCCCCCCceEEEEeCc-hhHhhhc-Ccc
Q 045677 95 DNS---IRNVYDGVNMIGSRL-----RHKKVLLLIDDVAD--VEQLRGLFGKRDWFGLGSMIIITTRD-EHLLKLH-RVE 162 (352)
Q Consensus 95 ~~~---~~~~~~~~~~~~~~l-----~~~~~llvlDd~~~--~~~~~~l~~~~~~~~~~~~iiitsr~-~~~~~~~-~~~ 162 (352)
... ..-.-+.+..+.+.+ .++.-++|||+++. ...-..++..+.+.+.++.+|+++.+ ..+.+.. ...
T Consensus 85 ~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRC 164 (319)
T PRK08769 85 TGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRC 164 (319)
T ss_pred ccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhh
Confidence 000 000111122222222 23556999999974 45677787777776778877776654 4444443 456
Q ss_pred cEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchhHHH
Q 045677 163 EVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLAVDV 213 (352)
Q Consensus 163 ~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~ 213 (352)
..+.+.+++.+++.+.+.+.. .. +..+..+...++|.|+....
T Consensus 165 q~i~~~~~~~~~~~~~L~~~~----~~----~~~a~~~~~l~~G~p~~A~~ 207 (319)
T PRK08769 165 QRLEFKLPPAHEALAWLLAQG----VS----ERAAQEALDAARGHPGLAAQ 207 (319)
T ss_pred eEeeCCCcCHHHHHHHHHHcC----CC----hHHHHHHHHHcCCCHHHHHH
Confidence 789999999999999987642 11 23356778999999985543
No 109
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=98.53 E-value=3.2e-06 Score=77.72 Aligned_cols=193 Identities=13% Similarity=0.151 Sum_probs=118.7
Q ss_pred cCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCC-c----ceeEeeeccccccCCCcHHHHH
Q 045677 9 KELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEF-D----GSSFLADVRERCDKEGSVISLQ 83 (352)
Q Consensus 9 ~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~l~ 83 (352)
.++||.+.-.+.|...+..+ .-.+..+.+|+-|+||||+|+.++..+--.- . ++.... +...... .. .++.
T Consensus 16 ~evvGQe~v~~~L~nal~~~-ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~-Ck~I~~g-~~-~Dvi 91 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENG-RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCIS-CKEINEG-SL-IDVI 91 (515)
T ss_pred HHhcccHHHHHHHHHHHHhC-cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhh-hHhhhcC-Cc-ccch
Confidence 45699999999999998853 2346678999999999999999998752211 0 110000 0000000 00 1111
Q ss_pred HHHHHHHhcccCCCccchhhhHHHHHhh-hCCceEEEEEeCCC--ChhhhhhhhCCCCCCCCCceEEEEeCchh-H-hhh
Q 045677 84 KQLLSDLLMLADNSIRNVYDGVNMIGSR-LRHKKVLLLIDDVA--DVEQLRGLFGKRDWFGLGSMIIITTRDEH-L-LKL 158 (352)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~llvlDd~~--~~~~~~~l~~~~~~~~~~~~iiitsr~~~-~-~~~ 158 (352)
.- -..+....+++.++.+.+... ..++.=++|||+++ +...+..++..+...+.+..+|+.|.+.. + ...
T Consensus 92 Ei-----DaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TI 166 (515)
T COG2812 92 EI-----DAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTI 166 (515)
T ss_pred hh-----hhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhh
Confidence 00 001111122222222222211 12455599999996 66789999999988888888888777653 2 222
Q ss_pred cCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchhHH
Q 045677 159 HRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLAVD 212 (352)
Q Consensus 159 ~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~ 212 (352)
...++.+.++.++.++....+...+..... ...++.+..|.+..+|...-..
T Consensus 167 lSRcq~f~fkri~~~~I~~~L~~i~~~E~I--~~e~~aL~~ia~~a~Gs~RDal 218 (515)
T COG2812 167 LSRCQRFDFKRLDLEEIAKHLAAILDKEGI--NIEEDALSLIARAAEGSLRDAL 218 (515)
T ss_pred hhccccccccCCCHHHHHHHHHHHHHhcCC--ccCHHHHHHHHHHcCCChhhHH
Confidence 456778999999999999999887743222 2345778888888888655433
No 110
>CHL00176 ftsH cell division protein; Validated
Probab=98.53 E-value=2.7e-06 Score=81.26 Aligned_cols=181 Identities=15% Similarity=0.198 Sum_probs=101.7
Q ss_pred cCcccccHHHHHHHHHH---hcC-------CCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCc
Q 045677 9 KELVGMESRLEKLKFLM---CTG-------SNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGS 78 (352)
Q Consensus 9 ~~~vGR~~~l~~l~~~l---~~~-------~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (352)
.+++|.+...+++.+.+ ... ....+-++++||+|+|||+||+.++......| +....
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~----i~is~--------- 249 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPF----FSISG--------- 249 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe----eeccH---------
Confidence 34677777666665543 321 12245699999999999999999998764332 11111
Q ss_pred HHHHHHHHHHHHhcccCCCccchhhhHHHHHhhhCCceEEEEEeCCCChh----------------hhhhhhCCCCCC--
Q 045677 79 VISLQKQLLSDLLMLADNSIRNVYDGVNMIGSRLRHKKVLLLIDDVADVE----------------QLRGLFGKRDWF-- 140 (352)
Q Consensus 79 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~~----------------~~~~l~~~~~~~-- 140 (352)
.++. ....+ .........+.......+++|+|||++... .+..++..+...
T Consensus 250 -s~f~----~~~~g------~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~ 318 (638)
T CHL00176 250 -SEFV----EMFVG------VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKG 318 (638)
T ss_pred -HHHH----HHhhh------hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccC
Confidence 1111 11000 011122333444556788999999995431 133444333211
Q ss_pred CCCceEEEEeCchh-H----hhhcCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCC-CchhHHHH
Q 045677 141 GLGSMIIITTRDEH-L----LKLHRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASG-LPLAVDVL 214 (352)
Q Consensus 141 ~~~~~iiitsr~~~-~----~~~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G-~Pl~i~~~ 214 (352)
..+..+|.+|.... + ....++...+.++..+.++-.++++........ ........+++.+.| .+.-|..+
T Consensus 319 ~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~---~~d~~l~~lA~~t~G~sgaDL~~l 395 (638)
T CHL00176 319 NKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL---SPDVSLELIARRTPGFSGADLANL 395 (638)
T ss_pred CCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc---chhHHHHHHHhcCCCCCHHHHHHH
Confidence 23445555554432 1 112345678889999999999998877643221 123456778888887 55556555
Q ss_pred HH
Q 045677 215 VS 216 (352)
Q Consensus 215 ~~ 216 (352)
+.
T Consensus 396 vn 397 (638)
T CHL00176 396 LN 397 (638)
T ss_pred HH
Confidence 44
No 111
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.52 E-value=9.3e-07 Score=67.39 Aligned_cols=24 Identities=42% Similarity=0.544 Sum_probs=21.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhcC
Q 045677 35 IGIWGMGGLGKTTLARVVYDLMSH 58 (352)
Q Consensus 35 v~I~G~~GiGKT~La~~~~~~~~~ 58 (352)
|+|+|++|+|||++++.+++.+..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~ 24 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGF 24 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTS
T ss_pred CEEECcCCCCeeHHHHHHHhhccc
Confidence 579999999999999999999853
No 112
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.51 E-value=2.5e-06 Score=77.10 Aligned_cols=181 Identities=14% Similarity=0.144 Sum_probs=98.4
Q ss_pred cCcccccHHHHHHHHHHhc-----------CCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCC
Q 045677 9 KELVGMESRLEKLKFLMCT-----------GSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEG 77 (352)
Q Consensus 9 ~~~vGR~~~l~~l~~~l~~-----------~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (352)
..+.|-+...++|.+.+.. +-..++-++++|++|+|||++|+.++......| +.+. .
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~f---i~i~-~-------- 212 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATF---IRVV-G-------- 212 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCE---EEEe-h--------
Confidence 4567888888887775531 113457799999999999999999998765432 1111 0
Q ss_pred cHHHHHHHHHHHHhcccCCCccchhhhHHHHHhhhCCceEEEEEeCCCChh----------------hhhhhhCCCCC--
Q 045677 78 SVISLQKQLLSDLLMLADNSIRNVYDGVNMIGSRLRHKKVLLLIDDVADVE----------------QLRGLFGKRDW-- 139 (352)
Q Consensus 78 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~~----------------~~~~l~~~~~~-- 139 (352)
.. +.....+. ........+.......+.+|+||+++... .+..++..+..
T Consensus 213 --s~----l~~k~~ge------~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~ 280 (398)
T PTZ00454 213 --SE----FVQKYLGE------GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFD 280 (398)
T ss_pred --HH----HHHHhcch------hHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccC
Confidence 01 11111110 01111222333345678999999985321 12233333221
Q ss_pred CCCCceEEEEeCchh-Hhh----hcCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCc-hhHHH
Q 045677 140 FGLGSMIIITTRDEH-LLK----LHRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLP-LAVDV 213 (352)
Q Consensus 140 ~~~~~~iiitsr~~~-~~~----~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~P-l~i~~ 213 (352)
...+..+|+||.... +.+ ..+....+.++..+.++...+++.......... .-....++..+.|+. .-|+.
T Consensus 281 ~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~---dvd~~~la~~t~g~sgaDI~~ 357 (398)
T PTZ00454 281 QTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSE---EVDLEDFVSRPEKISAADIAA 357 (398)
T ss_pred CCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCc---ccCHHHHHHHcCCCCHHHHHH
Confidence 123556676665432 212 124566789988888888887775542211111 122556777776653 33444
Q ss_pred HHH
Q 045677 214 LVS 216 (352)
Q Consensus 214 ~~~ 216 (352)
++.
T Consensus 358 l~~ 360 (398)
T PTZ00454 358 ICQ 360 (398)
T ss_pred HHH
Confidence 433
No 113
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=98.49 E-value=6.6e-06 Score=77.29 Aligned_cols=181 Identities=18% Similarity=0.230 Sum_probs=98.5
Q ss_pred cCcccccHHHHHHHHHHh---c-------CCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCc
Q 045677 9 KELVGMESRLEKLKFLMC---T-------GSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGS 78 (352)
Q Consensus 9 ~~~vGR~~~l~~l~~~l~---~-------~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (352)
++++|-+...+++.+.+. . +....+-++++||+|+|||+||+.++......| +....
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~----~~i~~--------- 121 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPF----FSISG--------- 121 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCe----eeccH---------
Confidence 456787766655554333 1 123345689999999999999999998754332 11110
Q ss_pred HHHHHHHHHHHHhcccCCCccchhhhHHHHHhhhCCceEEEEEeCCCChh----------------hhhhhhCCCCCC--
Q 045677 79 VISLQKQLLSDLLMLADNSIRNVYDGVNMIGSRLRHKKVLLLIDDVADVE----------------QLRGLFGKRDWF-- 140 (352)
Q Consensus 79 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~~----------------~~~~l~~~~~~~-- 140 (352)
.++ .....+. ....+...+.......+.+|+||+++... .+..++..+...
T Consensus 122 -~~~----~~~~~g~------~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~ 190 (495)
T TIGR01241 122 -SDF----VEMFVGV------GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGT 190 (495)
T ss_pred -HHH----HHHHhcc------cHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccC
Confidence 111 1111110 11122233344445678899999995421 122333333211
Q ss_pred CCCceEEEEeCchh-----HhhhcCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCC-CchhHHHH
Q 045677 141 GLGSMIIITTRDEH-----LLKLHRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASG-LPLAVDVL 214 (352)
Q Consensus 141 ~~~~~iiitsr~~~-----~~~~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G-~Pl~i~~~ 214 (352)
..+..||.||.... +....++...+.++..+.++-.++++.......... ......+++.+.| .+.-|..+
T Consensus 191 ~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~---~~~l~~la~~t~G~sgadl~~l 267 (495)
T TIGR01241 191 NTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAP---DVDLKAVARRTPGFSGADLANL 267 (495)
T ss_pred CCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCc---chhHHHHHHhCCCCCHHHHHHH
Confidence 22334555554332 122234567899999999888888877663322221 2335678888887 44556655
Q ss_pred HH
Q 045677 215 VS 216 (352)
Q Consensus 215 ~~ 216 (352)
++
T Consensus 268 ~~ 269 (495)
T TIGR01241 268 LN 269 (495)
T ss_pred HH
Confidence 44
No 114
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.49 E-value=5.7e-06 Score=71.68 Aligned_cols=152 Identities=14% Similarity=0.165 Sum_probs=81.3
Q ss_pred CcccccHHHHHHHHHHh---c-------C---CCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCC--cceeEeeecccccc
Q 045677 10 ELVGMESRLEKLKFLMC---T-------G---SNDVRTIGIWGMGGLGKTTLARVVYDLMSHEF--DGSSFLADVRERCD 74 (352)
Q Consensus 10 ~~vGR~~~l~~l~~~l~---~-------~---~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~--~~~~~~~~~~~~~~ 74 (352)
.++|-+...+++.++.. . + ......++++|++|+|||++|+.++..+.... ....++.. +.
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v----~~ 98 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSV----TR 98 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEe----cH
Confidence 56776666666544322 1 0 11233688999999999999988887654321 11122220 00
Q ss_pred CCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHHhhhCCceEEEEEeCCCCh-----------hhhhhhhCCCCCCCCC
Q 045677 75 KEGSVISLQKQLLSDLLMLADNSIRNVYDGVNMIGSRLRHKKVLLLIDDVADV-----------EQLRGLFGKRDWFGLG 143 (352)
Q Consensus 75 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~-----------~~~~~l~~~~~~~~~~ 143 (352)
. .+...+.+... ......+... .+-+|+||+++.. +....++..+.....+
T Consensus 99 -----~----~l~~~~~g~~~------~~~~~~~~~a---~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~ 160 (284)
T TIGR02880 99 -----D----DLVGQYIGHTA------PKTKEILKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDD 160 (284)
T ss_pred -----H----HHhHhhcccch------HHHHHHHHHc---cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCC
Confidence 1 12222211110 1111222221 2358999999632 2234445544444456
Q ss_pred ceEEEEeCchhHhhh--------cCcccEEecCCCCHhHHHHHHHhhh
Q 045677 144 SMIIITTRDEHLLKL--------HRVEEVYKLEALNFDEAFRLFCLKA 183 (352)
Q Consensus 144 ~~iiitsr~~~~~~~--------~~~~~~~~l~~l~~~e~~~ll~~~~ 183 (352)
.+||+++..+..... .+....+.+++++.+|...++....
T Consensus 161 ~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l 208 (284)
T TIGR02880 161 LVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLML 208 (284)
T ss_pred EEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHH
Confidence 677777654322111 1234679999999999999988765
No 115
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=4.6e-06 Score=71.83 Aligned_cols=171 Identities=16% Similarity=0.210 Sum_probs=94.8
Q ss_pred ccccHHHHHHHHHHhc-----------CCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHH
Q 045677 12 VGMESRLEKLKFLMCT-----------GSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVI 80 (352)
Q Consensus 12 vGR~~~l~~l~~~l~~-----------~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (352)
=|-+.++++|.+...- +=..++-|++|||||+|||-||+.++++....|- -++. .
T Consensus 154 GGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFI---rvvg-----------S 219 (406)
T COG1222 154 GGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFI---RVVG-----------S 219 (406)
T ss_pred cCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEE---Eecc-----------H
Confidence 3667777777775542 1145677999999999999999999987654431 1110 1
Q ss_pred HHHHHHHHHHhcccCCCccchhhhHHHHHhh-hCCceEEEEEeCCCChh----------------hhhhhhCCCCCC--C
Q 045677 81 SLQKQLLSDLLMLADNSIRNVYDGVNMIGSR-LRHKKVLLLIDDVADVE----------------QLRGLFGKRDWF--G 141 (352)
Q Consensus 81 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~llvlDd~~~~~----------------~~~~l~~~~~~~--~ 141 (352)
++...+.+..+ .++..+.+. -...+.+|++|+++... .+-+++..+.-+ .
T Consensus 220 ----ElVqKYiGEGa-------RlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~ 288 (406)
T COG1222 220 ----ELVQKYIGEGA-------RLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPR 288 (406)
T ss_pred ----HHHHHHhccch-------HHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCC
Confidence 23333332221 122222222 24679999999995321 233444444322 3
Q ss_pred CCceEEEEeCch-----hHhhhcCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchh
Q 045677 142 LGSMIIITTRDE-----HLLKLHRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLA 210 (352)
Q Consensus 142 ~~~~iiitsr~~-----~~~~~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~ 210 (352)
.+.+||..|... .++...+....++++ ++..+.+.-+.+..-........ -.++.+++.|.|.--|
T Consensus 289 ~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfp-lPd~~gR~~Il~IHtrkM~l~~d--vd~e~la~~~~g~sGA 359 (406)
T COG1222 289 GNVKVIMATNRPDILDPALLRPGRFDRKIEFP-LPDEEGRAEILKIHTRKMNLADD--VDLELLARLTEGFSGA 359 (406)
T ss_pred CCeEEEEecCCccccChhhcCCCcccceeecC-CCCHHHHHHHHHHHhhhccCccC--cCHHHHHHhcCCCchH
Confidence 567888766433 233345667788887 55554544444433222222111 1256677777776543
No 116
>CHL00181 cbbX CbbX; Provisional
Probab=98.43 E-value=2.5e-05 Score=67.73 Aligned_cols=130 Identities=15% Similarity=0.163 Sum_probs=72.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcCC-C-cceeEeeeccccccCCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHH
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLMSHE-F-DGSSFLADVRERCDKEGSVISLQKQLLSDLLMLADNSIRNVYDGVNMIG 109 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (352)
...++++|++|+|||++|+.++..+... + ....|+. . + . . .+...+.+... ......+.
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~-v---~----~-~----~l~~~~~g~~~------~~~~~~l~ 119 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLT-V---T----R-D----DLVGQYIGHTA------PKTKEVLK 119 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEE-e---c----H-H----HHHHHHhccch------HHHHHHHH
Confidence 3458899999999999999998875322 1 1111221 0 0 0 1 12222211110 11111222
Q ss_pred hhhCCceEEEEEeCCCCh-----------hhhhhhhCCCCCCCCCceEEEEeCchhHhh--------hcCcccEEecCCC
Q 045677 110 SRLRHKKVLLLIDDVADV-----------EQLRGLFGKRDWFGLGSMIIITTRDEHLLK--------LHRVEEVYKLEAL 170 (352)
Q Consensus 110 ~~l~~~~~llvlDd~~~~-----------~~~~~l~~~~~~~~~~~~iiitsr~~~~~~--------~~~~~~~~~l~~l 170 (352)
. . .+-+|+||+++.. +....++..+.....+.+||+++..+.+.. ..+....+.++++
T Consensus 120 ~-a--~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~ 196 (287)
T CHL00181 120 K-A--MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDY 196 (287)
T ss_pred H-c--cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCc
Confidence 2 1 2349999999642 234444444444445667777776433211 1234568999999
Q ss_pred CHhHHHHHHHhhh
Q 045677 171 NFDEAFRLFCLKA 183 (352)
Q Consensus 171 ~~~e~~~ll~~~~ 183 (352)
+.+|..+++...+
T Consensus 197 t~~el~~I~~~~l 209 (287)
T CHL00181 197 TPEELLQIAKIML 209 (287)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999888776
No 117
>CHL00195 ycf46 Ycf46; Provisional
Probab=98.42 E-value=3.3e-06 Score=78.15 Aligned_cols=154 Identities=16% Similarity=0.154 Sum_probs=83.6
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHHh
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQKQLLSDLLMLADNSIRNVYDGVNMIGS 110 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (352)
.++-++++||+|+|||.+|+.++......+ +..+... +.....+. ....+...+..
T Consensus 258 ~pkGILL~GPpGTGKTllAkaiA~e~~~~~----~~l~~~~--------------l~~~~vGe------se~~l~~~f~~ 313 (489)
T CHL00195 258 TPRGLLLVGIQGTGKSLTAKAIANDWQLPL----LRLDVGK--------------LFGGIVGE------SESRMRQMIRI 313 (489)
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCCE----EEEEhHH--------------hcccccCh------HHHHHHHHHHH
Confidence 457799999999999999999998865432 2221111 11000000 01111222232
Q ss_pred hhCCceEEEEEeCCCChhh--------------hhhhhCCCCCCCCCceEEEEeCchh-----HhhhcCcccEEecCCCC
Q 045677 111 RLRHKKVLLLIDDVADVEQ--------------LRGLFGKRDWFGLGSMIIITTRDEH-----LLKLHRVEEVYKLEALN 171 (352)
Q Consensus 111 ~l~~~~~llvlDd~~~~~~--------------~~~l~~~~~~~~~~~~iiitsr~~~-----~~~~~~~~~~~~l~~l~ 171 (352)
.-...+++|+||+++..-. +..++..+.....+..||.||.+.. +....++...+.++.-+
T Consensus 314 A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~ 393 (489)
T CHL00195 314 AEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPS 393 (489)
T ss_pred HHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcC
Confidence 3345789999999953210 1222222222233444555665432 22223566788888888
Q ss_pred HhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCch
Q 045677 172 FDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPL 209 (352)
Q Consensus 172 ~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl 209 (352)
.++-.++++....... +........+.+++.+.|+--
T Consensus 394 ~~eR~~Il~~~l~~~~-~~~~~~~dl~~La~~T~GfSG 430 (489)
T CHL00195 394 LEEREKIFKIHLQKFR-PKSWKKYDIKKLSKLSNKFSG 430 (489)
T ss_pred HHHHHHHHHHHHhhcC-CCcccccCHHHHHhhcCCCCH
Confidence 8888888877663322 111112346677777777643
No 118
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.42 E-value=3.8e-05 Score=67.31 Aligned_cols=172 Identities=12% Similarity=0.105 Sum_probs=99.2
Q ss_pred HHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHh-cCCCcceeEeeeccccccCCCcHHHHHHHHHHHH------h
Q 045677 19 EKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLM-SHEFDGSSFLADVRERCDKEGSVISLQKQLLSDL------L 91 (352)
Q Consensus 19 ~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------~ 91 (352)
+.|.+.+..+ .-++...++|+.|+||+++|..+++.+ +..-.... -+ +. =..++.+.... .
T Consensus 12 ~~l~~~~~~~-rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~-~C--g~--------C~sC~~~~~g~HPD~~~i 79 (325)
T PRK06871 12 QQITQAFQQG-LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQ-PC--GQ--------CHSCHLFQAGNHPDFHIL 79 (325)
T ss_pred HHHHHHHHcC-CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCC-CC--CC--------CHHHHHHhcCCCCCEEEE
Confidence 4555555532 235778899999999999999999875 22211000 00 00 00111111000 0
Q ss_pred cccCCCccchhhhHHHHHhhh-----CCceEEEEEeCCCC--hhhhhhhhCCCCCCCCCceEEEEeCch-hHhhh-cCcc
Q 045677 92 MLADNSIRNVYDGVNMIGSRL-----RHKKVLLLIDDVAD--VEQLRGLFGKRDWFGLGSMIIITTRDE-HLLKL-HRVE 162 (352)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~l-----~~~~~llvlDd~~~--~~~~~~l~~~~~~~~~~~~iiitsr~~-~~~~~-~~~~ 162 (352)
.......-.+++ +..+.+.+ .++.=++|||+++. ...-..++..+.+.+.++.+|++|.+. .+.+. ....
T Consensus 80 ~p~~~~~I~id~-iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC 158 (325)
T PRK06871 80 EPIDNKDIGVDQ-VREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRC 158 (325)
T ss_pred ccccCCCCCHHH-HHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhc
Confidence 000000011111 12222222 24556888999974 456788888888778888877777654 44433 3456
Q ss_pred cEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchh
Q 045677 163 EVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLA 210 (352)
Q Consensus 163 ~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~ 210 (352)
..+.+.+++.+++.+.+.+... .. ...+......++|.|.-
T Consensus 159 ~~~~~~~~~~~~~~~~L~~~~~---~~----~~~~~~~~~l~~g~p~~ 199 (325)
T PRK06871 159 QTWLIHPPEEQQALDWLQAQSS---AE----ISEILTALRINYGRPLL 199 (325)
T ss_pred eEEeCCCCCHHHHHHHHHHHhc---cC----hHHHHHHHHHcCCCHHH
Confidence 7899999999999999887641 11 12356678889999963
No 119
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.42 E-value=2.6e-05 Score=66.56 Aligned_cols=200 Identities=19% Similarity=0.130 Sum_probs=109.8
Q ss_pred cCcccccHH---HHHHHHHHhc-CCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCc-----ceeEeeeccccccCCCcH
Q 045677 9 KELVGMESR---LEKLKFLMCT-GSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFD-----GSSFLADVRERCDKEGSV 79 (352)
Q Consensus 9 ~~~vGR~~~---l~~l~~~l~~-~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 79 (352)
+.+||-... ++.|.+++.. +..+.+.++|+|++|+|||++++.+.......++ .-+++.. ..+..+.
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq---~P~~p~~- 109 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQ---MPPEPDE- 109 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEe---cCCCCCh-
Confidence 445665443 4566666665 4456688999999999999999999986433221 1233332 2333333
Q ss_pred HHHHHHHHHHHhcccCCCccchhhhHHHHHhhhC-CceEEEEEeCCCCh-----hhhhhh---hCCCCCCCCCceEE-EE
Q 045677 80 ISLQKQLLSDLLMLADNSIRNVYDGVNMIGSRLR-HKKVLLLIDDVADV-----EQLRGL---FGKRDWFGLGSMII-IT 149 (352)
Q Consensus 80 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~llvlDd~~~~-----~~~~~l---~~~~~~~~~~~~ii-it 149 (352)
..+...++..++.+..... ............+. -+.-+||||++++. ..-+.+ +..+.+ .-...|| +-
T Consensus 110 ~~~Y~~IL~~lgaP~~~~~-~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~N-eL~ipiV~vG 187 (302)
T PF05621_consen 110 RRFYSAILEALGAPYRPRD-RVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGN-ELQIPIVGVG 187 (302)
T ss_pred HHHHHHHHHHhCcccCCCC-CHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhh-ccCCCeEEec
Confidence 7888888888776554332 33333333334443 24459999999642 111222 222211 1222344 33
Q ss_pred eCchhH-----hhhcCcccEEecCCCCHh-HHHHHHHhhh--cCCC-CCchhHHHHHHHHHHHcCCCchhHHHH
Q 045677 150 TRDEHL-----LKLHRVEEVYKLEALNFD-EAFRLFCLKA--FDTY-KPLEEYLELAKCFVKYASGLPLAVDVL 214 (352)
Q Consensus 150 sr~~~~-----~~~~~~~~~~~l~~l~~~-e~~~ll~~~~--~~~~-~~~~~~~~~~~~i~~~~~G~Pl~i~~~ 214 (352)
|++-.. ....+....+.|+.+..+ +...|+.... ..-. ...-...+.+..|+..++|+.--+..+
T Consensus 188 t~~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~l 261 (302)
T PF05621_consen 188 TREAYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSRL 261 (302)
T ss_pred cHHHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHHH
Confidence 332211 111123456778887765 4566654432 1111 111234678899999999998766544
No 120
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.40 E-value=1.3e-05 Score=72.69 Aligned_cols=221 Identities=19% Similarity=0.123 Sum_probs=123.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHHhhhC
Q 045677 34 TIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQKQLLSDLLMLADNSIRNVYDGVNMIGSRLR 113 (352)
Q Consensus 34 ~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 113 (352)
+++|+||-++||||++..+....... .+++......... ..+ .+.... +...-.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~---~iy~~~~d~~~~~----~~l-~d~~~~------------------~~~~~~ 92 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEE---IIYINFDDLRLDR----IEL-LDLLRA------------------YIELKE 92 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcc---eEEEEecchhcch----hhH-HHHHHH------------------HHHhhc
Confidence 99999999999999997777665544 4444321111111 111 111111 111111
Q ss_pred CceEEEEEeCCCChhhhhhhhCCCCCCCCCceEEEEeCchhHhhh-----c-CcccEEecCCCCHhHHHHHHHhhhcCCC
Q 045677 114 HKKVLLLIDDVADVEQLRGLFGKRDWFGLGSMIIITTRDEHLLKL-----H-RVEEVYKLEALNFDEAFRLFCLKAFDTY 187 (352)
Q Consensus 114 ~~~~llvlDd~~~~~~~~~l~~~~~~~~~~~~iiitsr~~~~~~~-----~-~~~~~~~l~~l~~~e~~~ll~~~~~~~~ 187 (352)
.++..++||.|.....|...+..+.+.+.. .+++|+.+..+... . .....+.+.|||..|...+.....
T Consensus 93 ~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~~~~~---- 167 (398)
T COG1373 93 REKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLKGEEI---- 167 (398)
T ss_pred cCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhccccc----
Confidence 267899999999999988888777654444 78888776543222 1 234578999999999887543000
Q ss_pred CCchhHHHHHHHHHHHcCCCchhHHHHHHhhcCCChhHHHHHHHHHccCCchhHH-HHHHhhh-ccCcHhhhhhhhhh-c
Q 045677 188 KPLEEYLELAKCFVKYASGLPLAVDVLVSFLFGRPVDQWRSTQERLKRDPENKIL-GILQISF-DGLKEAEKNIFLDV-A 264 (352)
Q Consensus 188 ~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~-~~L~~~~~~~l~~l-s 264 (352)
... .. ...-.-+-.+||.|.++..--..-. ...... ..+. ++....- ... ...++++..+ +
T Consensus 168 ~~~-~~-~~~f~~Yl~~GGfP~~v~~~~~~~~------~~~~~~-------~~~~~Di~~~~~~~~~-~~~k~i~~~l~~ 231 (398)
T COG1373 168 EPS-KL-ELLFEKYLETGGFPESVKADLSEKK------LKEYLD-------TILKRDIIERGKIENA-DLMKRILRFLAS 231 (398)
T ss_pred chh-HH-HHHHHHHHHhCCCcHHHhCcchhhH------HHHHHH-------HHHHHHHHHHcCcccH-HHHHHHHHHHHh
Confidence 000 11 1133445678999987744211100 111100 1111 1111110 111 3445555444 4
Q ss_pred cCCCCCCHHHHHHHH-HhcCCCchhchHHHhhccceee
Q 045677 265 CFYKWENRDYVSKIL-DSCGFDPIIGISVLIEKSLLTV 301 (352)
Q Consensus 265 ~~~~~~~~~~l~~~~-~~~~~~~~~~l~~L~~~~li~~ 301 (352)
-.+..++.+.+...+ +........+++.|.+.-++..
T Consensus 232 ~~g~~~s~~~la~~l~~is~~Ti~~Yl~~le~~fll~~ 269 (398)
T COG1373 232 NIGSPISYSSLARELKGISKDTIRKYLSYLEDAFLLFL 269 (398)
T ss_pred hcCCccCHHHHHHHHhccchHHHHHHHHHHHHhhheEE
Confidence 456678999999888 4555556777888888777763
No 121
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.40 E-value=1.5e-05 Score=70.60 Aligned_cols=161 Identities=13% Similarity=0.055 Sum_probs=91.4
Q ss_pred Cccc-ccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhc-CCCcceeEeeeccccccCCCcHHHHHHHHH
Q 045677 10 ELVG-MESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMS-HEFDGSSFLADVRERCDKEGSVISLQKQLL 87 (352)
Q Consensus 10 ~~vG-R~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 87 (352)
.++| -+..++.|...+..+ .-++..+++|+.|+|||++|..+++.+- ....... -++ . -..+..+.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~-~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~-~cg---~-------C~~c~~~~ 73 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKN-RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE-PCG---T-------CTNCKRID 73 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC-CCC---c-------CHHHHHHh
Confidence 3566 666677888877743 3457789999999999999999988752 2210000 000 0 00111111
Q ss_pred HHHhc-----ccCCCccchhhhHHHHHhh----hCCceEEEEEeCCCC--hhhhhhhhCCCCCCCCCceEEEEeCch-hH
Q 045677 88 SDLLM-----LADNSIRNVYDGVNMIGSR----LRHKKVLLLIDDVAD--VEQLRGLFGKRDWFGLGSMIIITTRDE-HL 155 (352)
Q Consensus 88 ~~~~~-----~~~~~~~~~~~~~~~~~~~----l~~~~~llvlDd~~~--~~~~~~l~~~~~~~~~~~~iiitsr~~-~~ 155 (352)
..... ......-.+++..+.+... ..+.+-++|||+++. ......++..+.+.+.++.+|++|.+. .+
T Consensus 74 ~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~l 153 (329)
T PRK08058 74 SGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQI 153 (329)
T ss_pred cCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhC
Confidence 00000 0000011112221111111 124556899999964 445677887877777788877777543 33
Q ss_pred hhh-cCcccEEecCCCCHhHHHHHHHhh
Q 045677 156 LKL-HRVEEVYKLEALNFDEAFRLFCLK 182 (352)
Q Consensus 156 ~~~-~~~~~~~~l~~l~~~e~~~ll~~~ 182 (352)
.+. ......+++.+++.++..+.+.+.
T Consensus 154 l~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 154 LPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred cHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 332 345678999999999998888764
No 122
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.40 E-value=6.1e-06 Score=75.21 Aligned_cols=180 Identities=16% Similarity=0.149 Sum_probs=98.4
Q ss_pred cCcccccHHHHHHHHHHhc-----------CCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCC
Q 045677 9 KELVGMESRLEKLKFLMCT-----------GSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEG 77 (352)
Q Consensus 9 ~~~vGR~~~l~~l~~~l~~-----------~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (352)
..+.|.+.+++++.+.+.- +-...+.++++|++|+|||++|+.++......|- .+. .
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi---~V~-~-------- 250 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFL---RVV-G-------- 250 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEE---EEe-c--------
Confidence 4467889999988887642 1123567889999999999999999998765431 111 0
Q ss_pred cHHHHHHHHHHHHhcccCCCccchhhhHHHHHhhhCCceEEEEEeCCCChh----------------hhhhhhCCCCC--
Q 045677 78 SVISLQKQLLSDLLMLADNSIRNVYDGVNMIGSRLRHKKVLLLIDDVADVE----------------QLRGLFGKRDW-- 139 (352)
Q Consensus 78 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~~----------------~~~~l~~~~~~-- 139 (352)
..+. ..+.+. ........+.....+.+.+|+||+++... .+..++..+..
T Consensus 251 --seL~----~k~~Ge------~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~ 318 (438)
T PTZ00361 251 --SELI----QKYLGD------GPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFD 318 (438)
T ss_pred --chhh----hhhcch------HHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhc
Confidence 0111 111100 01111222233334678899999984221 12223322221
Q ss_pred CCCCceEEEEeCchh-Hhhh----cCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchh-HHH
Q 045677 140 FGLGSMIIITTRDEH-LLKL----HRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLA-VDV 213 (352)
Q Consensus 140 ~~~~~~iiitsr~~~-~~~~----~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~-i~~ 213 (352)
...+..||++|.... +.+. .+....+.++..+.++..+++........... .-....++..+.|+--+ |..
T Consensus 319 ~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~---dvdl~~la~~t~g~sgAdI~~ 395 (438)
T PTZ00361 319 SRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAE---DVDLEEFIMAKDELSGADIKA 395 (438)
T ss_pred ccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCc---CcCHHHHHHhcCCCCHHHHHH
Confidence 123556777666432 2221 24556899999999999998886652221111 11245566666654433 444
Q ss_pred HH
Q 045677 214 LV 215 (352)
Q Consensus 214 ~~ 215 (352)
++
T Consensus 396 i~ 397 (438)
T PTZ00361 396 IC 397 (438)
T ss_pred HH
Confidence 43
No 123
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.39 E-value=3.2e-05 Score=68.26 Aligned_cols=90 Identities=13% Similarity=0.154 Sum_probs=62.8
Q ss_pred CceEEEEEeCCC--ChhhhhhhhCCCCCCCCCceEEEEeCc-hhHhhh-cCcccEEecCCCCHhHHHHHHHhhhcCCCCC
Q 045677 114 HKKVLLLIDDVA--DVEQLRGLFGKRDWFGLGSMIIITTRD-EHLLKL-HRVEEVYKLEALNFDEAFRLFCLKAFDTYKP 189 (352)
Q Consensus 114 ~~~~llvlDd~~--~~~~~~~l~~~~~~~~~~~~iiitsr~-~~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~ 189 (352)
++.=++|||+++ +......++..+.+.+.++.+|++|.+ +.+.+. ......+.+.+++.++..+.+.+... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~~----~ 206 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQGV----A 206 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcCC----C
Confidence 345589999997 456688888888877778876665554 445444 34567899999999999999877531 1
Q ss_pred chhHHHHHHHHHHHcCCCchhHHH
Q 045677 190 LEEYLELAKCFVKYASGLPLAVDV 213 (352)
Q Consensus 190 ~~~~~~~~~~i~~~~~G~Pl~i~~ 213 (352)
. .+.+...++|.|.-...
T Consensus 207 ~------~~~~l~~~~Gsp~~Al~ 224 (342)
T PRK06964 207 D------ADALLAEAGGAPLAALA 224 (342)
T ss_pred h------HHHHHHHcCCCHHHHHH
Confidence 1 12357788999974443
No 124
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.38 E-value=5.9e-06 Score=78.50 Aligned_cols=53 Identities=21% Similarity=0.283 Sum_probs=43.2
Q ss_pred CCCCcCcccccHHHHHHHHHHhcC---CCCeEEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 5 LEIPKELVGMESRLEKLKFLMCTG---SNDVRTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 5 ~~~~~~~vGR~~~l~~l~~~l~~~---~~~~~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
|..-..++|-+..++.+..|+... ....++++|+|++|+||||++..++..+.
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 445567899999999999998862 23446799999999999999999987654
No 125
>PRK08116 hypothetical protein; Validated
Probab=98.36 E-value=3.2e-06 Score=72.54 Aligned_cols=101 Identities=23% Similarity=0.248 Sum_probs=55.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHHhhh
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQKQLLSDLLMLADNSIRNVYDGVNMIGSRL 112 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 112 (352)
..++|+|++|+|||.||..+++.+..+....+++. . ..++..+...+.... ... ...+.+.+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~-~----------~~ll~~i~~~~~~~~---~~~----~~~~~~~l 176 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVN-F----------PQLLNRIKSTYKSSG---KED----ENEIIRSL 176 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE-H----------HHHHHHHHHHHhccc---ccc----HHHHHHHh
Confidence 46889999999999999999999866533334332 1 334444433322111 111 11123333
Q ss_pred CCceEEEEEeCCC--Chhh--hhhhhCCCCC-CCCCceEEEEeCc
Q 045677 113 RHKKVLLLIDDVA--DVEQ--LRGLFGKRDW-FGLGSMIIITTRD 152 (352)
Q Consensus 113 ~~~~~llvlDd~~--~~~~--~~~l~~~~~~-~~~~~~iiitsr~ 152 (352)
.+-+ ||||||+. ...+ ...++..+.. ...+..+|+||..
T Consensus 177 ~~~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 177 VNAD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred cCCC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 3333 89999993 2222 2333333321 1245568888863
No 126
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.36 E-value=2.4e-05 Score=75.03 Aligned_cols=48 Identities=29% Similarity=0.360 Sum_probs=39.1
Q ss_pred CCcCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHh
Q 045677 7 IPKELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLM 56 (352)
Q Consensus 7 ~~~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~ 56 (352)
.-+.++|++..++.+.+.+.. .....++|+|++|+||||||+.+....
T Consensus 152 ~~~~iiGqs~~~~~l~~~ia~--~~~~~vlL~Gp~GtGKTTLAr~i~~~~ 199 (615)
T TIGR02903 152 AFSEIVGQERAIKALLAKVAS--PFPQHIILYGPPGVGKTTAARLALEEA 199 (615)
T ss_pred cHHhceeCcHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 335689999999998887763 334679999999999999999988765
No 127
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.35 E-value=4.5e-05 Score=67.51 Aligned_cols=169 Identities=14% Similarity=0.093 Sum_probs=99.6
Q ss_pred HHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHh-cCCC----cceeEeeeccccccCCCcHHHHHHHHHHH---
Q 045677 18 LEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLM-SHEF----DGSSFLADVRERCDKEGSVISLQKQLLSD--- 89 (352)
Q Consensus 18 l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 89 (352)
-++|.+.+..+ .-++..+++|+.|+||+++|..+++.+ +.+. .++.. ..++.+...
T Consensus 11 ~~~l~~~~~~~-rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C---------------~sC~~~~~g~HP 74 (334)
T PRK07993 11 YEQLVGSYQAG-RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHC---------------RGCQLMQAGTHP 74 (334)
T ss_pred HHHHHHHHHcC-CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCC---------------HHHHHHHcCCCC
Confidence 34565655532 335788899999999999999999875 2211 11110 001111000
Q ss_pred ----HhcccCCCccchhhhHHHHHhhh-----CCceEEEEEeCCC--ChhhhhhhhCCCCCCCCCceEEEEeCc-hhHhh
Q 045677 90 ----LLMLADNSIRNVYDGVNMIGSRL-----RHKKVLLLIDDVA--DVEQLRGLFGKRDWFGLGSMIIITTRD-EHLLK 157 (352)
Q Consensus 90 ----~~~~~~~~~~~~~~~~~~~~~~l-----~~~~~llvlDd~~--~~~~~~~l~~~~~~~~~~~~iiitsr~-~~~~~ 157 (352)
+........-.+++ +..+.+.+ .+..=++|||+++ +...-..++..+.+.+.++.+|++|.+ +.+.+
T Consensus 75 D~~~i~p~~~~~~I~idq-iR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLp 153 (334)
T PRK07993 75 DYYTLTPEKGKSSLGVDA-VREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLA 153 (334)
T ss_pred CEEEEecccccccCCHHH-HHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChH
Confidence 00000000011111 12222222 2456699999997 445678888888877788887776665 34444
Q ss_pred h-cCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchh
Q 045677 158 L-HRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLA 210 (352)
Q Consensus 158 ~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~ 210 (352)
. ......+.+.+++.+++.+.+.+.. + .. ++.+..++..++|.|.-
T Consensus 154 TIrSRCq~~~~~~~~~~~~~~~L~~~~-~--~~----~~~a~~~~~la~G~~~~ 200 (334)
T PRK07993 154 TLRSRCRLHYLAPPPEQYALTWLSREV-T--MS----QDALLAALRLSAGAPGA 200 (334)
T ss_pred HHHhccccccCCCCCHHHHHHHHHHcc-C--CC----HHHHHHHHHHcCCCHHH
Confidence 4 3456678999999999999886642 1 11 23466788999999963
No 128
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.31 E-value=7.8e-05 Score=65.20 Aligned_cols=172 Identities=10% Similarity=0.083 Sum_probs=99.5
Q ss_pred HHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHh-cCCCcceeEeeeccccccCCCcHHHHHHHHHHHHh------
Q 045677 19 EKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLM-SHEFDGSSFLADVRERCDKEGSVISLQKQLLSDLL------ 91 (352)
Q Consensus 19 ~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------ 91 (352)
+.|.+.+.. +.-++.+.++|+.|+||+++|..+++.+ +.+.... .++.. ..+..+.....
T Consensus 13 ~~l~~~~~~-~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~----~Cg~C--------~sC~~~~~g~HPD~~~i 79 (319)
T PRK06090 13 QNWKAGLDA-GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSE----ACGFC--------HSCELMQSGNHPDLHVI 79 (319)
T ss_pred HHHHHHHHc-CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCC----CCCCC--------HHHHHHHcCCCCCEEEE
Confidence 455555553 2335788999999999999999999874 3221100 00000 01111111000
Q ss_pred ccc-CCCccchhhhHHHHHhhh-----CCceEEEEEeCCC--ChhhhhhhhCCCCCCCCCceEEEEeCch-hHhhh-cCc
Q 045677 92 MLA-DNSIRNVYDGVNMIGSRL-----RHKKVLLLIDDVA--DVEQLRGLFGKRDWFGLGSMIIITTRDE-HLLKL-HRV 161 (352)
Q Consensus 92 ~~~-~~~~~~~~~~~~~~~~~l-----~~~~~llvlDd~~--~~~~~~~l~~~~~~~~~~~~iiitsr~~-~~~~~-~~~ 161 (352)
... ....-.+++ +..+.+.+ .+..=++|||+++ +......++..+.+.+.++.+|++|.+. .+.+. ...
T Consensus 80 ~p~~~~~~I~vdq-iR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SR 158 (319)
T PRK06090 80 KPEKEGKSITVEQ-IRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSR 158 (319)
T ss_pred ecCcCCCcCCHHH-HHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhc
Confidence 000 000011111 12222222 2345699999997 4456788888888777888777766544 44444 345
Q ss_pred ccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchhHHHH
Q 045677 162 EEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLAVDVL 214 (352)
Q Consensus 162 ~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~ 214 (352)
...+.+.+++.+++.+.+.+.... ....+...++|.|+....+
T Consensus 159 Cq~~~~~~~~~~~~~~~L~~~~~~----------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 159 CQQWVVTPPSTAQAMQWLKGQGIT----------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred ceeEeCCCCCHHHHHHHHHHcCCc----------hHHHHHHHcCCCHHHHHHH
Confidence 678999999999999998765311 1245688899999866544
No 129
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=1.3e-05 Score=73.60 Aligned_cols=174 Identities=18% Similarity=0.209 Sum_probs=101.3
Q ss_pred cCcccccHHHHHHHHHHhc----------CCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCc
Q 045677 9 KELVGMESRLEKLKFLMCT----------GSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGS 78 (352)
Q Consensus 9 ~~~vGR~~~l~~l~~~l~~----------~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (352)
..+=|-+..+++|.+.+.. +-..++-|++|||+|+|||.||+.++.++.-.| +. .+.+
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf-----~~----isAp--- 257 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPF-----LS----ISAP--- 257 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCce-----Ee----ecch---
Confidence 3456788888888887664 113467799999999999999999998776443 21 1110
Q ss_pred HHHHHHHHHHHHhcccCCCccchhhhHHHHHhhhCCceEEEEEeCCCChh-------------hhhhhhCCCCCCC----
Q 045677 79 VISLQKQLLSDLLMLADNSIRNVYDGVNMIGSRLRHKKVLLLIDDVADVE-------------QLRGLFGKRDWFG---- 141 (352)
Q Consensus 79 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~~-------------~~~~l~~~~~~~~---- 141 (352)
++.... ...+.+.+-+.+.......+++++||+++.+. -+..++..+....
T Consensus 258 ------eivSGv------SGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~ 325 (802)
T KOG0733|consen 258 ------EIVSGV------SGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKT 325 (802)
T ss_pred ------hhhccc------CcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhccccccc
Confidence 122111 11222333444555556789999999995321 1334444433211
Q ss_pred CCc-eEEE--EeCchhHhhh----cCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCch
Q 045677 142 LGS-MIII--TTRDEHLLKL----HRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPL 209 (352)
Q Consensus 142 ~~~-~iii--tsr~~~~~~~----~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl 209 (352)
.+- .+|| |+|.+.+.+. .++...|.|.--+...-..+|...+.+-..... -..++|++.+-|+--
T Consensus 326 ~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~---~d~~qlA~lTPGfVG 397 (802)
T KOG0733|consen 326 KGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGD---FDFKQLAKLTPGFVG 397 (802)
T ss_pred CCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCC---cCHHHHHhcCCCccc
Confidence 112 2333 6676554333 345667888777777777777766543332221 225667777777653
No 130
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=4.8e-06 Score=79.80 Aligned_cols=152 Identities=11% Similarity=0.126 Sum_probs=90.3
Q ss_pred CcCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCC-Cc-----ceeEeeeccccccCCCcHHH
Q 045677 8 PKELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHE-FD-----GSSFLADVRERCDKEGSVIS 81 (352)
Q Consensus 8 ~~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~ 81 (352)
-++.+||+.|++++.+.|..+..+-++ ++|++|+|||+++.-+++++-.. .+ ..++-.+++..
T Consensus 169 lDPvIGRd~EI~r~iqIL~RR~KNNPv--LiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~L--------- 237 (786)
T COG0542 169 LDPVIGRDEEIRRTIQILSRRTKNNPV--LVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSL--------- 237 (786)
T ss_pred CCCCcChHHHHHHHHHHHhccCCCCCe--EecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHH---------
Confidence 367899999999999999975444344 79999999999999999986433 11 11222111111
Q ss_pred HHHHHHHHHhcccCCCccchhhhHHHHHhhhC-CceEEEEEeCCCC-----------hhhhhhhhCCCCCCCCCceEEEE
Q 045677 82 LQKQLLSDLLMLADNSIRNVYDGVNMIGSRLR-HKKVLLLIDDVAD-----------VEQLRGLFGKRDWFGLGSMIIIT 149 (352)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~llvlDd~~~-----------~~~~~~l~~~~~~~~~~~~iiit 149 (352)
..+ ..-..+.++....+.+.+. ..+++|+||.++. .+.-.-+.+.+. ....+.|-.
T Consensus 238 ---------vAG-akyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLA--RGeL~~IGA 305 (786)
T COG0542 238 ---------VAG-AKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALA--RGELRCIGA 305 (786)
T ss_pred ---------hcc-ccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHh--cCCeEEEEe
Confidence 111 1112233444444444443 3489999999842 222233333333 223444444
Q ss_pred eCchhHh-------hhcCcccEEecCCCCHhHHHHHHHhh
Q 045677 150 TRDEHLL-------KLHRVEEVYKLEALNFDEAFRLFCLK 182 (352)
Q Consensus 150 sr~~~~~-------~~~~~~~~~~l~~l~~~e~~~ll~~~ 182 (352)
|...+.- ...+.++.+.+..-+.+++..+++-.
T Consensus 306 TT~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 306 TTLDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred ccHHHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHH
Confidence 4333322 22356778999999999999988754
No 131
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.27 E-value=4.7e-06 Score=70.04 Aligned_cols=49 Identities=16% Similarity=0.160 Sum_probs=33.7
Q ss_pred HHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEe
Q 045677 18 LEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFL 66 (352)
Q Consensus 18 l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~ 66 (352)
+..+.++...-.++...++++|++|+|||+|+..++..+......+.++
T Consensus 85 l~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~i 133 (244)
T PRK07952 85 LSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLII 133 (244)
T ss_pred HHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 4455555543223345788999999999999999999876654444444
No 132
>PRK08181 transposase; Validated
Probab=98.27 E-value=6.3e-06 Score=70.35 Aligned_cols=34 Identities=21% Similarity=0.137 Sum_probs=26.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEe
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFL 66 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~ 66 (352)
.-++|+|++|+|||.|+..+++...+......|+
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~ 140 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFT 140 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeee
Confidence 4589999999999999999998876554344444
No 133
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=98.26 E-value=3e-05 Score=66.40 Aligned_cols=174 Identities=18% Similarity=0.199 Sum_probs=100.2
Q ss_pred CcCcccccHHHHHHHHHHhc--CCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCC-CcHHHHHH
Q 045677 8 PKELVGMESRLEKLKFLMCT--GSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKE-GSVISLQK 84 (352)
Q Consensus 8 ~~~~vGR~~~l~~l~~~l~~--~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~ 84 (352)
-..|+|-..+-+.+.+|+.. ..+....|.|.||.|+|||.|......+ .+.+......+.+.+..... -.+..+..
T Consensus 23 ~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~-~q~~~E~~l~v~Lng~~~~dk~al~~I~r 101 (408)
T KOG2228|consen 23 HINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD-IQENGENFLLVRLNGELQTDKIALKGITR 101 (408)
T ss_pred CcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh-HHhcCCeEEEEEECccchhhHHHHHHHHH
Confidence 35688999999999998885 2234577899999999999999888877 44455555555554433321 11133333
Q ss_pred HHHHHHhcccCCCccchhhhHHHHHhhhC------CceEEEEEeCCCChh------hhhhhhCCCCC-CCCCceEEEEeC
Q 045677 85 QLLSDLLMLADNSIRNVYDGVNMIGSRLR------HKKVLLLIDDVADVE------QLRGLFGKRDW-FGLGSMIIITTR 151 (352)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~------~~~~llvlDd~~~~~------~~~~l~~~~~~-~~~~~~iiitsr 151 (352)
++..++.... ....+..+....+...++ +.++++|+|+++-.. -+-.++..... ..+-|.|-+|||
T Consensus 102 ql~~e~~~~~-k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttr 180 (408)
T KOG2228|consen 102 QLALELNRIV-KSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTR 180 (408)
T ss_pred HHHHHHhhhh-eeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecc
Confidence 3333222111 112222333333444443 346899999885321 11122211111 123445668888
Q ss_pred chh-------HhhhcCcccEEecCCCCHhHHHHHHHhhh
Q 045677 152 DEH-------LLKLHRVEEVYKLEALNFDEAFRLFCLKA 183 (352)
Q Consensus 152 ~~~-------~~~~~~~~~~~~l~~l~~~e~~~ll~~~~ 183 (352)
-+- +.+.......+.++.++.++..+++++..
T Consensus 181 ld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 181 LDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred ccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 542 23333444567888899999999988776
No 134
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=1.4e-05 Score=74.99 Aligned_cols=160 Identities=19% Similarity=0.204 Sum_probs=89.7
Q ss_pred CCcCcccccHHHHHHHHHHhc----CCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHH
Q 045677 7 IPKELVGMESRLEKLKFLMCT----GSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISL 82 (352)
Q Consensus 7 ~~~~~vGR~~~l~~l~~~l~~----~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 82 (352)
+..+.+|-+.--+++.++|.- +.-..++++++||||+|||+|++.++..+.+.|-... ...+++.+. +
T Consensus 321 Ld~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~s-LGGvrDEAE-------I 392 (782)
T COG0466 321 LDKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRIS-LGGVRDEAE-------I 392 (782)
T ss_pred hcccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEe-cCccccHHH-------h
Confidence 345678888888888887763 2334589999999999999999999999988863222 111221111 0
Q ss_pred HHHHHHHHhcccCCCccchh-hhHHHHHhhhCCceEEEEEeCCCChhh------hhhhhCCCC------------CC-C-
Q 045677 83 QKQLLSDLLMLADNSIRNVY-DGVNMIGSRLRHKKVLLLIDDVADVEQ------LRGLFGKRD------------WF-G- 141 (352)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~llvlDd~~~~~~------~~~l~~~~~------------~~-~- 141 (352)
.+....-..... ..++.+ ......+-|++||+++...+ -..++..+. .. -
T Consensus 393 --------RGHRRTYIGamPGrIiQ~m-kka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yD 463 (782)
T COG0466 393 --------RGHRRTYIGAMPGKIIQGM-KKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYD 463 (782)
T ss_pred --------ccccccccccCChHHHHHH-HHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccc
Confidence 111111011111 111111 22345778999999953211 111111111 00 0
Q ss_pred -CCceEEEEeCch--hHhhhcCcccEEecCCCCHhHHHHHHHhhh
Q 045677 142 -LGSMIIITTRDE--HLLKLHRVEEVYKLEALNFDEAFRLFCLKA 183 (352)
Q Consensus 142 -~~~~iiitsr~~--~~~~~~~~~~~~~l~~l~~~e~~~ll~~~~ 183 (352)
....+|.|...- -..+..+.-..++|.+.+.+|-.++-.+++
T Consensus 464 LS~VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 464 LSKVMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred hhheEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 123333343322 234445667899999999999998877765
No 135
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.25 E-value=5.9e-06 Score=63.56 Aligned_cols=28 Identities=39% Similarity=0.328 Sum_probs=24.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcCCC
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLMSHEF 60 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~~~~~ 60 (352)
+.+.|+|++|+|||+++..++..+....
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~ 30 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG 30 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC
Confidence 5789999999999999999998876654
No 136
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.25 E-value=4.5e-05 Score=61.93 Aligned_cols=58 Identities=21% Similarity=0.316 Sum_probs=44.4
Q ss_pred CCCCcCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHh-cCCCccee
Q 045677 5 LEIPKELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLM-SHEFDGSS 64 (352)
Q Consensus 5 ~~~~~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~-~~~~~~~~ 64 (352)
|..-.+.||-+..++.|.-.-. +++.+-+.|.||||+||||=+..+++.+ ...|...+
T Consensus 23 P~~l~dIVGNe~tv~rl~via~--~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~v 81 (333)
T KOG0991|consen 23 PSVLQDIVGNEDTVERLSVIAK--EGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAV 81 (333)
T ss_pred chHHHHhhCCHHHHHHHHHHHH--cCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHh
Confidence 3344678999999999988777 5566788899999999999998888875 33344333
No 137
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.23 E-value=1.7e-05 Score=62.64 Aligned_cols=146 Identities=18% Similarity=0.179 Sum_probs=75.0
Q ss_pred cccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHHHHHHHHh-
Q 045677 13 GMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQKQLLSDLL- 91 (352)
Q Consensus 13 GR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 91 (352)
|-+...+.|.+.+..+ .-++.++++|+.|+||+++|..+++.+-........... -..+..+.....
T Consensus 1 gq~~~~~~L~~~~~~~-~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~-----------c~~c~~~~~~~~~ 68 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG-RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGE-----------CRSCRRIEEGNHP 68 (162)
T ss_dssp S-HHHHHHHHHHHHCT-C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SS-----------SHHHHHHHTT-CT
T ss_pred CcHHHHHHHHHHHHcC-CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCC-----------CHHHHHHHhccCc
Confidence 5566777888877743 235678999999999999999999875322111000000 011111110000
Q ss_pred ---cccCCC---ccchhhhHHHHHhhh-----CCceEEEEEeCCC--ChhhhhhhhCCCCCCCCCceEEEEeCchh-Hhh
Q 045677 92 ---MLADNS---IRNVYDGVNMIGSRL-----RHKKVLLLIDDVA--DVEQLRGLFGKRDWFGLGSMIIITTRDEH-LLK 157 (352)
Q Consensus 92 ---~~~~~~---~~~~~~~~~~~~~~l-----~~~~~llvlDd~~--~~~~~~~l~~~~~~~~~~~~iiitsr~~~-~~~ 157 (352)
...... .-..++ +..+...+ .+..=++|||+++ +.+....++..+.+.+.++.+|++|.+.. +.+
T Consensus 69 d~~~~~~~~~~~~i~i~~-ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~ 147 (162)
T PF13177_consen 69 DFIIIKPDKKKKSIKIDQ-IREIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILP 147 (162)
T ss_dssp TEEEEETTTSSSSBSHHH-HHHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-H
T ss_pred ceEEEecccccchhhHHH-HHHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChH
Confidence 000000 011122 22232222 2345699999997 45567778777777778899888887653 333
Q ss_pred h-cCcccEEecCCCC
Q 045677 158 L-HRVEEVYKLEALN 171 (352)
Q Consensus 158 ~-~~~~~~~~l~~l~ 171 (352)
. ......+.++++|
T Consensus 148 TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 148 TIRSRCQVIRFRPLS 162 (162)
T ss_dssp HHHTTSEEEEE----
T ss_pred HHHhhceEEecCCCC
Confidence 2 3445667777664
No 138
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=98.23 E-value=4.3e-05 Score=75.40 Aligned_cols=179 Identities=13% Similarity=0.139 Sum_probs=96.4
Q ss_pred CcccccHHHHHHHHHHhc-----------CCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCc
Q 045677 10 ELVGMESRLEKLKFLMCT-----------GSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGS 78 (352)
Q Consensus 10 ~~vGR~~~l~~l~~~l~~-----------~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (352)
.+.|-+...+.|.+.+.- +-..++-++++||+|+|||++|+.++......| +....
T Consensus 454 di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~f----i~v~~--------- 520 (733)
T TIGR01243 454 DIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANF----IAVRG--------- 520 (733)
T ss_pred hcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCE----EEEeh---------
Confidence 356766666666665431 112345689999999999999999998865432 11111
Q ss_pred HHHHHHHHHHHHhcccCCCccchhhhHHHHHhhhCCceEEEEEeCCCChh--------------hhhhhhCCCCC--CCC
Q 045677 79 VISLQKQLLSDLLMLADNSIRNVYDGVNMIGSRLRHKKVLLLIDDVADVE--------------QLRGLFGKRDW--FGL 142 (352)
Q Consensus 79 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~~--------------~~~~l~~~~~~--~~~ 142 (352)
. .+...+.+. ....+...+.......+.+|+||+++... .+..++..+.. ...
T Consensus 521 -~----~l~~~~vGe------se~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~ 589 (733)
T TIGR01243 521 -P----EILSKWVGE------SEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELS 589 (733)
T ss_pred -H----HHhhcccCc------HHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCC
Confidence 0 111111110 11112223333345678999999985321 12334333331 123
Q ss_pred CceEEEEeCchh-Hhhh----cCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCc-hhHHHHH
Q 045677 143 GSMIIITTRDEH-LLKL----HRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLP-LAVDVLV 215 (352)
Q Consensus 143 ~~~iiitsr~~~-~~~~----~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~P-l~i~~~~ 215 (352)
+..||.||.... +.+. .++...+.++..+.++-.++++.......... ...+..+++.|.|+- ..|..++
T Consensus 590 ~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~---~~~l~~la~~t~g~sgadi~~~~ 665 (733)
T TIGR01243 590 NVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAE---DVDLEELAEMTEGYTGADIEAVC 665 (733)
T ss_pred CEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCc---cCCHHHHHHHcCCCCHHHHHHHH
Confidence 444555554332 2111 24567888999998888888876543221111 122567888888764 3344443
No 139
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=98.23 E-value=3.1e-05 Score=76.33 Aligned_cols=173 Identities=16% Similarity=0.166 Sum_probs=94.7
Q ss_pred CcccccHHHHHHHHHHhc-----------CCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCc
Q 045677 10 ELVGMESRLEKLKFLMCT-----------GSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGS 78 (352)
Q Consensus 10 ~~vGR~~~l~~l~~~l~~-----------~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (352)
.+.|.+..++.+.+.+.. +-...+.++|+|++|+|||+|++.++......+ +..+....
T Consensus 179 di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~----i~i~~~~i------ 248 (733)
T TIGR01243 179 DIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYF----ISINGPEI------ 248 (733)
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeE----EEEecHHH------
Confidence 478999999998887642 112346789999999999999999998765432 11111110
Q ss_pred HHHHHHHHHHHHhcccCCCccchhhhHHHHHhhhCCceEEEEEeCCCChh-------------hhhhhhCCCCCC-CCCc
Q 045677 79 VISLQKQLLSDLLMLADNSIRNVYDGVNMIGSRLRHKKVLLLIDDVADVE-------------QLRGLFGKRDWF-GLGS 144 (352)
Q Consensus 79 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~~-------------~~~~l~~~~~~~-~~~~ 144 (352)
..... ......+...+.......+.+|+||+++... ....++..+... ..+.
T Consensus 249 --------~~~~~------g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~ 314 (733)
T TIGR01243 249 --------MSKYY------GESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGR 314 (733)
T ss_pred --------hcccc------cHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCC
Confidence 00000 0011112223333345677899999985321 123333333221 2233
Q ss_pred eEEE-EeCch-hHhhh----cCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCch
Q 045677 145 MIII-TTRDE-HLLKL----HRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPL 209 (352)
Q Consensus 145 ~iii-tsr~~-~~~~~----~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl 209 (352)
.+|| +|... .+.+. .++...+.++..+.++..+++.......... .......+++.+.|+.-
T Consensus 315 vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~---~d~~l~~la~~t~G~~g 382 (733)
T TIGR01243 315 VIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLA---EDVDLDKLAEVTHGFVG 382 (733)
T ss_pred EEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCc---cccCHHHHHHhCCCCCH
Confidence 3444 44322 22111 2345678888888888888887554222111 11235678888888654
No 140
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=3.9e-05 Score=71.81 Aligned_cols=164 Identities=15% Similarity=0.109 Sum_probs=89.4
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHHh
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQKQLLSDLLMLADNSIRNVYDGVNMIGS 110 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (352)
....+.|.|+.|+|||+|++.++..+..+..+.+-++++...... . +..+.. .+...+..
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~-~-~e~iQk------------------~l~~vfse 489 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGS-S-LEKIQK------------------FLNNVFSE 489 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccch-h-HHHHHH------------------HHHHHHHH
Confidence 356789999999999999999999876554333333322211111 0 111111 11233455
Q ss_pred hhCCceEEEEEeCCCChhh---------------hhhhh----CCCCCCCCCceEEEEeCc-----hhHhhhcCcccEEe
Q 045677 111 RLRHKKVLLLIDDVADVEQ---------------LRGLF----GKRDWFGLGSMIIITTRD-----EHLLKLHRVEEVYK 166 (352)
Q Consensus 111 ~l~~~~~llvlDd~~~~~~---------------~~~l~----~~~~~~~~~~~iiitsr~-----~~~~~~~~~~~~~~ 166 (352)
++...|-+|||||++.... +..++ ..+........+|.|... +.+.....+.....
T Consensus 490 ~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~ 569 (952)
T KOG0735|consen 490 ALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIA 569 (952)
T ss_pred HHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEe
Confidence 6677899999999942111 11221 111111122233444432 12222233456789
Q ss_pred cCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCC-chhHHHHHH
Q 045677 167 LEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGL-PLAVDVLVS 216 (352)
Q Consensus 167 l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~-Pl~i~~~~~ 216 (352)
|+++...+-..++....... . .....+.++-+..+|+|+ |.-++.+..
T Consensus 570 L~ap~~~~R~~IL~~~~s~~-~-~~~~~~dLd~ls~~TEGy~~~DL~ifVe 618 (952)
T KOG0735|consen 570 LPAPAVTRRKEILTTIFSKN-L-SDITMDDLDFLSVKTEGYLATDLVIFVE 618 (952)
T ss_pred cCCcchhHHHHHHHHHHHhh-h-hhhhhHHHHHHHHhcCCccchhHHHHHH
Confidence 99999998888887655221 1 122345566688888885 455555443
No 141
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.22 E-value=1.8e-06 Score=72.81 Aligned_cols=92 Identities=15% Similarity=0.100 Sum_probs=54.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcC-CCcceeEeeeccccccCCCcHHHHHHHHHHHHhcccCCCcc-----chhhhH
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLMSH-EFDGSSFLADVRERCDKEGSVISLQKQLLSDLLMLADNSIR-----NVYDGV 105 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-----~~~~~~ 105 (352)
...+.|.|++|+|||||++.+++.... +|+..+|++..++.. ....++...+...+.......+. -.....
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~---~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~ 92 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERP---EEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVL 92 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCC---ccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHH
Confidence 366889999999999999999988654 567777876443321 12356666653222222222111 111122
Q ss_pred HHHHhh-hCCceEEEEEeCCCC
Q 045677 106 NMIGSR-LRHKKVLLLIDDVAD 126 (352)
Q Consensus 106 ~~~~~~-l~~~~~llvlDd~~~ 126 (352)
...... ..++++++++|++..
T Consensus 93 ~~a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 93 EKAKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHHHCCCCEEEEEECHHH
Confidence 222222 247899999999943
No 142
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=98.22 E-value=0.00015 Score=64.53 Aligned_cols=77 Identities=16% Similarity=0.203 Sum_probs=52.3
Q ss_pred ccHHHHHHHHHHhcCC-CCeEEEEEEcCCCCcHHHHHHHHHHHhcCC--CcceeEeeeccccccCCCcHHHHHHHHHHHH
Q 045677 14 MESRLEKLKFLMCTGS-NDVRTIGIWGMGGLGKTTLARVVYDLMSHE--FDGSSFLADVRERCDKEGSVISLQKQLLSDL 90 (352)
Q Consensus 14 R~~~l~~l~~~l~~~~-~~~~~v~I~G~~GiGKT~La~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 90 (352)
|+.-.+.|.+.+...+ ..+.++.|.|+=|+|||++++.+.+.+... ....+...+.+........+..++..+...+
T Consensus 1 ~~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w~~~~~~~~~~~~~~~l~~~l 80 (325)
T PF07693_consen 1 RKPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAWEYDGEDDLWASFLEELFDQL 80 (325)
T ss_pred ChHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEccccCCCcchHHHHHHHHHHHHH
Confidence 3445677778777643 567889999999999999999999998777 2233333345445544555566666665544
No 143
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.17 E-value=5.7e-05 Score=67.18 Aligned_cols=161 Identities=17% Similarity=0.159 Sum_probs=87.4
Q ss_pred CcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHHHHHHH
Q 045677 10 ELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQKQLLSD 89 (352)
Q Consensus 10 ~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 89 (352)
.++|-+.....+..+.......++.++++||+|+|||++|..+++.+........-.+.. ...+..+...
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~----------~~~~~~~~~~ 71 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGH----------CRSCKLIPAG 71 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccc----------hhhhhHHhhc
Confidence 467888888999998885444556799999999999999999998864332100000000 0000000000
Q ss_pred H----hcccCCCccc---hhhhHHHHHhhh-----CCceEEEEEeCCCCh--hhhhhhhCCCCCCCCCceEEEEeCch-h
Q 045677 90 L----LMLADNSIRN---VYDGVNMIGSRL-----RHKKVLLLIDDVADV--EQLRGLFGKRDWFGLGSMIIITTRDE-H 154 (352)
Q Consensus 90 ~----~~~~~~~~~~---~~~~~~~~~~~l-----~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~iiitsr~~-~ 154 (352)
. ....+.+... ..+.+..+.+.. .+..-+++||+++.. +.-..++..+...+.+..+|+++... .
T Consensus 72 ~~~d~lel~~s~~~~~~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~~~ 151 (325)
T COG0470 72 NHPDFLELNPSDLRKIDIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDPSK 151 (325)
T ss_pred CCCceEEecccccCCCcchHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCChhh
Confidence 0 0000000000 111122222211 245679999999754 44666666666667778877777633 3
Q ss_pred Hhhh-cCcccEEecCCCCHhHHHHHHH
Q 045677 155 LLKL-HRVEEVYKLEALNFDEAFRLFC 180 (352)
Q Consensus 155 ~~~~-~~~~~~~~l~~l~~~e~~~ll~ 180 (352)
+.+. ...+..+++.+.+..+......
T Consensus 152 il~tI~SRc~~i~f~~~~~~~~i~~~e 178 (325)
T COG0470 152 ILPTIRSRCQRIRFKPPSRLEAIAWLE 178 (325)
T ss_pred ccchhhhcceeeecCCchHHHHHHHhh
Confidence 3332 2445677887755554444433
No 144
>PRK12377 putative replication protein; Provisional
Probab=98.17 E-value=1e-05 Score=68.26 Aligned_cols=36 Identities=17% Similarity=0.144 Sum_probs=28.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEee
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLA 67 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~ 67 (352)
...+.|+|++|+|||+||..+++.+......+.++.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~ 136 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT 136 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 357889999999999999999999876544444443
No 145
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.16 E-value=1.8e-05 Score=72.14 Aligned_cols=48 Identities=17% Similarity=0.220 Sum_probs=40.9
Q ss_pred CCcCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcC
Q 045677 7 IPKELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSH 58 (352)
Q Consensus 7 ~~~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~ 58 (352)
....++||+..++.+...+..+ ..|+|.|++|+|||++|+.+......
T Consensus 18 l~~~i~gre~vI~lll~aalag----~hVLL~GpPGTGKT~LAraLa~~~~~ 65 (498)
T PRK13531 18 LEKGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFAFQN 65 (498)
T ss_pred HhhhccCcHHHHHHHHHHHccC----CCEEEECCCChhHHHHHHHHHHHhcc
Confidence 3567999999999998888754 45889999999999999999987654
No 146
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.15 E-value=7.8e-05 Score=74.17 Aligned_cols=52 Identities=21% Similarity=0.317 Sum_probs=40.3
Q ss_pred CCcCcccccHHHHHHHHHHhc-------CCCCeEEEEEEcCCCCcHHHHHHHHHHHhcC
Q 045677 7 IPKELVGMESRLEKLKFLMCT-------GSNDVRTIGIWGMGGLGKTTLARVVYDLMSH 58 (352)
Q Consensus 7 ~~~~~vGR~~~l~~l~~~l~~-------~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~ 58 (352)
+....+|.+..++.+.+.+.. .+....+++++||+|+|||.||+.++..+-.
T Consensus 564 L~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~ 622 (852)
T TIGR03345 564 LAERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYG 622 (852)
T ss_pred hcCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhC
Confidence 345789999999999888753 1122346889999999999999999888643
No 147
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=98.15 E-value=9e-05 Score=63.60 Aligned_cols=37 Identities=24% Similarity=0.184 Sum_probs=27.0
Q ss_pred HHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcC
Q 045677 18 LEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSH 58 (352)
Q Consensus 18 l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~ 58 (352)
++.+..++.. .+.++|.|++|+|||++|..+++....
T Consensus 11 ~~~~l~~l~~----g~~vLL~G~~GtGKT~lA~~la~~lg~ 47 (262)
T TIGR02640 11 TSRALRYLKS----GYPVHLRGPAGTGKTTLAMHVARKRDR 47 (262)
T ss_pred HHHHHHHHhc----CCeEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 3444455542 256789999999999999999986643
No 148
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.14 E-value=3.2e-06 Score=67.84 Aligned_cols=36 Identities=22% Similarity=0.247 Sum_probs=26.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEee
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLA 67 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~ 67 (352)
..-++++|++|+|||.||..+++.+..+...+.|+.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~ 82 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFIT 82 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEee
Confidence 466899999999999999999988765544445443
No 149
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.13 E-value=6.4e-06 Score=72.48 Aligned_cols=35 Identities=17% Similarity=0.240 Sum_probs=28.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEee
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLA 67 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~ 67 (352)
..++++|++|+|||+|+..+++.+......++|+.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t 218 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRT 218 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 67999999999999999999998766544455554
No 150
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=98.12 E-value=3e-05 Score=76.68 Aligned_cols=53 Identities=19% Similarity=0.367 Sum_probs=40.6
Q ss_pred CcCcccccHHHHHHHHHHhc----CCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCC
Q 045677 8 PKELVGMESRLEKLKFLMCT----GSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEF 60 (352)
Q Consensus 8 ~~~~vGR~~~l~~l~~~l~~----~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~ 60 (352)
....+|.+...+.+.+++.. .....+.++++||+|+|||++|+.++..+...|
T Consensus 319 ~~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~ 375 (775)
T TIGR00763 319 DEDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKF 375 (775)
T ss_pred hhhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCe
Confidence 34578888888888876542 223346789999999999999999999886553
No 151
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.10 E-value=8.5e-05 Score=73.14 Aligned_cols=50 Identities=20% Similarity=0.325 Sum_probs=39.1
Q ss_pred CcCcccccHHHHHHHHHHhcC-------CCCeEEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 8 PKELVGMESRLEKLKFLMCTG-------SNDVRTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 8 ~~~~vGR~~~l~~l~~~l~~~-------~~~~~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
....+|.+..++.+.+.+... ......++++||+|+|||.||+.++..+.
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~ 509 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG 509 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc
Confidence 456789999999988877731 11234578999999999999999998874
No 152
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.10 E-value=7.9e-06 Score=72.31 Aligned_cols=91 Identities=14% Similarity=0.109 Sum_probs=53.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcC-CCcceeEeeeccccccCCCcHHHHHHHHHHHHhcccCCCccchh-----hhH
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLMSH-EFDGSSFLADVRERCDKEGSVISLQKQLLSDLLMLADNSIRNVY-----DGV 105 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----~~~ 105 (352)
.+-.+|+|++|+|||||++++++.+.. +|+..+|+...+.... .+.++...+...............+ ...
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~---EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~i 245 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPE---EVTDMQRSVKGEVVASTFDEPAERHVQVAEMVI 245 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchh---HHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHH
Confidence 356779999999999999999998654 6888888875544321 1244554444221212222111111 111
Q ss_pred HHHHhh-hCCceEEEEEeCCC
Q 045677 106 NMIGSR-LRHKKVLLLIDDVA 125 (352)
Q Consensus 106 ~~~~~~-l~~~~~llvlDd~~ 125 (352)
...... ..+++++|++|++.
T Consensus 246 e~Ae~~~e~G~dVlL~iDsIt 266 (416)
T PRK09376 246 EKAKRLVEHGKDVVILLDSIT 266 (416)
T ss_pred HHHHHHHHcCCCEEEEEEChH
Confidence 111111 25789999999994
No 153
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=3e-06 Score=71.81 Aligned_cols=80 Identities=23% Similarity=0.323 Sum_probs=47.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhc----CCCcceeEeeeccccccCCCcHHHHHHHHHHHHhcccCCCccchhhhHHH
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLMS----HEFDGSSFLADVRERCDKEGSVISLQKQLLSDLLMLADNSIRNVYDGVNM 107 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (352)
-|+++++||||+|||+|++.+++++. ..|.....+. .+ ...+.+.+...+. ..+....+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liE----in---------shsLFSKWFsESg---KlV~kmF~k 240 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIE----IN---------SHSLFSKWFSESG---KLVAKMFQK 240 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEE----Ee---------hhHHHHHHHhhhh---hHHHHHHHH
Confidence 58999999999999999999999853 3344444332 11 1123333332222 223344445
Q ss_pred HHhhhCCce--EEEEEeCCCCh
Q 045677 108 IGSRLRHKK--VLLLIDDVADV 127 (352)
Q Consensus 108 ~~~~l~~~~--~llvlDd~~~~ 127 (352)
+.+...+++ +++.||+|++.
T Consensus 241 I~ELv~d~~~lVfvLIDEVESL 262 (423)
T KOG0744|consen 241 IQELVEDRGNLVFVLIDEVESL 262 (423)
T ss_pred HHHHHhCCCcEEEEEeHHHHHH
Confidence 555555443 56678998653
No 154
>PRK10536 hypothetical protein; Provisional
Probab=98.09 E-value=0.0001 Score=61.74 Aligned_cols=43 Identities=14% Similarity=0.044 Sum_probs=36.8
Q ss_pred cCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHH
Q 045677 9 KELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 9 ~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
..+.+|......+..++.. ..+|+++|++|+|||+||..++.+
T Consensus 55 ~~i~p~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 55 SPILARNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred ccccCCCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHH
Confidence 5567899999999998874 259999999999999999998875
No 155
>PRK04132 replication factor C small subunit; Provisional
Probab=98.07 E-value=0.00069 Score=66.61 Aligned_cols=160 Identities=10% Similarity=0.080 Sum_probs=97.6
Q ss_pred EEc--CCCCcHHHHHHHHHHHh-cCCCcceeEeeeccccccCCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHHhhhC
Q 045677 37 IWG--MGGLGKTTLARVVYDLM-SHEFDGSSFLADVRERCDKEGSVISLQKQLLSDLLMLADNSIRNVYDGVNMIGSRLR 113 (352)
Q Consensus 37 I~G--~~GiGKT~La~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 113 (352)
+.| |.++||||+|..+++++ ...+...+.-.++.+.. - .+.++.++..+....+.. .
T Consensus 569 ~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~r----g-id~IR~iIk~~a~~~~~~---------------~ 628 (846)
T PRK04132 569 IGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDER----G-INVIREKVKEFARTKPIG---------------G 628 (846)
T ss_pred hcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcc----c-HHHHHHHHHHHHhcCCcC---------------C
Confidence 457 89999999999999886 33333344444332211 1 233344433322111100 1
Q ss_pred CceEEEEEeCCCCh--hhhhhhhCCCCCCCCCceEEEEeCch-hHhhh-cCcccEEecCCCCHhHHHHHHHhhhcCCCCC
Q 045677 114 HKKVLLLIDDVADV--EQLRGLFGKRDWFGLGSMIIITTRDE-HLLKL-HRVEEVYKLEALNFDEAFRLFCLKAFDTYKP 189 (352)
Q Consensus 114 ~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~iiitsr~~-~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~ 189 (352)
.+.-++|||+++.. ++...++..+...+..+++|+++.+. .+.+. ...+..+++.+++.++....+...+......
T Consensus 629 ~~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~ 708 (846)
T PRK04132 629 ASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLE 708 (846)
T ss_pred CCCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCC
Confidence 23469999999754 45667777766556677777766544 33222 3456789999999999988887665321111
Q ss_pred chhHHHHHHHHHHHcCCCchhHHHHHHhh
Q 045677 190 LEEYLELAKCFVKYASGLPLAVDVLVSFL 218 (352)
Q Consensus 190 ~~~~~~~~~~i~~~~~G~Pl~i~~~~~~l 218 (352)
..++.+..|+..++|.+.....+...+
T Consensus 709 --i~~e~L~~Ia~~s~GDlR~AIn~Lq~~ 735 (846)
T PRK04132 709 --LTEEGLQAILYIAEGDMRRAINILQAA 735 (846)
T ss_pred --CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 234678899999999997665544443
No 156
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.07 E-value=0.00016 Score=63.74 Aligned_cols=86 Identities=15% Similarity=0.153 Sum_probs=51.9
Q ss_pred ceEEEEEeCCCC--hhhhhhhhCCCCCCCCCceEEEEeCch-hHhhh-cCcccEEecCCCCHhHHHHHHHhhhcCCCCCc
Q 045677 115 KKVLLLIDDVAD--VEQLRGLFGKRDWFGLGSMIIITTRDE-HLLKL-HRVEEVYKLEALNFDEAFRLFCLKAFDTYKPL 190 (352)
Q Consensus 115 ~~~llvlDd~~~--~~~~~~l~~~~~~~~~~~~iiitsr~~-~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~ 190 (352)
++-++|+|+++. ...-..++..+.....++.+|++|.+. .+.+. ......+.+.+++.+++.+.+.+... ..
T Consensus 113 ~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~~~----~~ 188 (325)
T PRK08699 113 GLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRERGV----AE 188 (325)
T ss_pred CceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhcCC----Cc
Confidence 444667788863 344555555544434556677766654 33333 34567889999999999998876421 11
Q ss_pred hhHHHHHHHHHHHcCCCchh
Q 045677 191 EEYLELAKCFVKYASGLPLA 210 (352)
Q Consensus 191 ~~~~~~~~~i~~~~~G~Pl~ 210 (352)
. .. ....++|.|+.
T Consensus 189 -~-~~----~l~~~~g~p~~ 202 (325)
T PRK08699 189 -P-EE----RLAFHSGAPLF 202 (325)
T ss_pred -H-HH----HHHHhCCChhh
Confidence 1 11 23567899954
No 157
>PRK06526 transposase; Provisional
Probab=98.06 E-value=7.2e-06 Score=69.60 Aligned_cols=29 Identities=24% Similarity=0.084 Sum_probs=24.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcCCC
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLMSHEF 60 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~~~~~ 60 (352)
.+-++|+|++|+|||+||..+.....+..
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g 126 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAG 126 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCC
Confidence 35689999999999999999988865543
No 158
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=98.06 E-value=5e-05 Score=71.72 Aligned_cols=47 Identities=32% Similarity=0.572 Sum_probs=38.4
Q ss_pred cCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 9 KELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 9 ~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
+.++|.+..++.+...+.. .....++|+|++|+|||++|+.+.+..+
T Consensus 65 ~~iiGqs~~i~~l~~al~~--~~~~~vLi~Ge~GtGKt~lAr~i~~~~~ 111 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCG--PNPQHVIIYGPPGVGKTAAARLVLEEAK 111 (531)
T ss_pred HHeeCcHHHHHHHHHHHhC--CCCceEEEECCCCCCHHHHHHHHHHHhh
Confidence 3589999999999987763 3346678999999999999999987543
No 159
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=98.06 E-value=0.00028 Score=62.01 Aligned_cols=30 Identities=33% Similarity=0.568 Sum_probs=26.3
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHhcCC
Q 045677 30 NDVRTIGIWGMGGLGKTTLARVVYDLMSHE 59 (352)
Q Consensus 30 ~~~~~v~I~G~~GiGKT~La~~~~~~~~~~ 59 (352)
..++.+.||||+|+|||.+|+.++..+...
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~ 175 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIE 175 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCC
Confidence 456889999999999999999999987654
No 160
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.05 E-value=0.00024 Score=71.21 Aligned_cols=53 Identities=19% Similarity=0.368 Sum_probs=41.8
Q ss_pred CCcCcccccHHHHHHHHHHhcCC-------CCeEEEEEEcCCCCcHHHHHHHHHHHhcCC
Q 045677 7 IPKELVGMESRLEKLKFLMCTGS-------NDVRTIGIWGMGGLGKTTLARVVYDLMSHE 59 (352)
Q Consensus 7 ~~~~~vGR~~~l~~l~~~l~~~~-------~~~~~v~I~G~~GiGKT~La~~~~~~~~~~ 59 (352)
+...++|.+..++.+...+.... .....++++||+|+|||++|+.++..+...
T Consensus 563 l~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~ 622 (852)
T TIGR03346 563 LHERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDD 622 (852)
T ss_pred hhcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 34578999999999999887411 123568899999999999999999886544
No 161
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.05 E-value=0.00016 Score=72.25 Aligned_cols=52 Identities=17% Similarity=0.342 Sum_probs=40.0
Q ss_pred CcCcccccHHHHHHHHHHhcC-----CCC--eEEEEEEcCCCCcHHHHHHHHHHHhcCC
Q 045677 8 PKELVGMESRLEKLKFLMCTG-----SND--VRTIGIWGMGGLGKTTLARVVYDLMSHE 59 (352)
Q Consensus 8 ~~~~vGR~~~l~~l~~~l~~~-----~~~--~~~v~I~G~~GiGKT~La~~~~~~~~~~ 59 (352)
...++|.+..++.+...+... .++ ...++++||+|+|||++|+.++..+...
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~ 625 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDS 625 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcC
Confidence 456899999999998887641 111 2468899999999999999999876433
No 162
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.04 E-value=9.6e-06 Score=72.10 Aligned_cols=93 Identities=14% Similarity=0.116 Sum_probs=56.2
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcCC-CcceeEeeeccccccCCCcHHHHHHHHHHHHhcccCCCccch-----hhh
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMSHE-FDGSSFLADVRERCDKEGSVISLQKQLLSDLLMLADNSIRNV-----YDG 104 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-----~~~ 104 (352)
..+.++|+|++|+|||||+..+++.+... |+..+|+...++. ...+.++.+.+...........+... ...
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER---~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v 243 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDER---PEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMV 243 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCC---CccHHHHHHHhhceEEEecCCCChHHHHHHHHHH
Confidence 34678999999999999999999987555 7777777644332 12236666666433322222221111 111
Q ss_pred HHHHHhh-hCCceEEEEEeCCCC
Q 045677 105 VNMIGSR-LRHKKVLLLIDDVAD 126 (352)
Q Consensus 105 ~~~~~~~-l~~~~~llvlDd~~~ 126 (352)
....... ..+++++|++|++..
T Consensus 244 ~e~Ae~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 244 IEKAKRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHHHHHcCCCeEEEEEChhH
Confidence 1112222 257899999999953
No 163
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=0.00016 Score=65.61 Aligned_cols=131 Identities=15% Similarity=0.136 Sum_probs=72.6
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHH
Q 045677 30 NDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQKQLLSDLLMLADNSIRNVYDGVNMIG 109 (352)
Q Consensus 30 ~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (352)
++...|++.|++|+|||+||.+++..- .|+.+-.++ ..+ -.++ .+..........+.
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~S--~FPFvKiiS-pe~---miG~-----------------sEsaKc~~i~k~F~ 592 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALSS--DFPFVKIIS-PED---MIGL-----------------SESAKCAHIKKIFE 592 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhhc--CCCeEEEeC-hHH---ccCc-----------------cHHHHHHHHHHHHH
Confidence 455678899999999999999998653 344333332 100 0000 11111122223344
Q ss_pred hhhCCceEEEEEeCCCChhhh---------------hhhhCCCCCCCCCceEEEEeCchhHhhhc----CcccEEecCCC
Q 045677 110 SRLRHKKVLLLIDDVADVEQL---------------RGLFGKRDWFGLGSMIIITTRDEHLLKLH----RVEEVYKLEAL 170 (352)
Q Consensus 110 ~~l~~~~~llvlDd~~~~~~~---------------~~l~~~~~~~~~~~~iiitsr~~~~~~~~----~~~~~~~l~~l 170 (352)
+..+..=-+||+||++..-+| .-++...+..++..-|+-||....++..+ .+...+.++.+
T Consensus 593 DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl 672 (744)
T KOG0741|consen 593 DAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNL 672 (744)
T ss_pred HhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCcc
Confidence 444555569999999543322 22233323112233344455555555554 35568999999
Q ss_pred CH-hHHHHHHHhhh
Q 045677 171 NF-DEAFRLFCLKA 183 (352)
Q Consensus 171 ~~-~e~~~ll~~~~ 183 (352)
+. ++....+.+.-
T Consensus 673 ~~~~~~~~vl~~~n 686 (744)
T KOG0741|consen 673 TTGEQLLEVLEELN 686 (744)
T ss_pred CchHHHHHHHHHcc
Confidence 88 66777776654
No 164
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.04 E-value=0.00012 Score=64.77 Aligned_cols=47 Identities=21% Similarity=0.160 Sum_probs=38.3
Q ss_pred cccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 11 LVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 11 ~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
+||+...++++.+.+..-......|+|+|++|+||+++|+.+...-.
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s~ 47 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSK 47 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhcC
Confidence 58899999988888876444456789999999999999998876543
No 165
>PRK09183 transposase/IS protein; Provisional
Probab=98.03 E-value=1.8e-05 Score=67.65 Aligned_cols=27 Identities=30% Similarity=0.297 Sum_probs=22.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcCC
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLMSHE 59 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~~~~ 59 (352)
..++|+|++|+|||+|+..++......
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~ 129 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRA 129 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 568899999999999999998775444
No 166
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.03 E-value=1.5e-05 Score=67.77 Aligned_cols=29 Identities=24% Similarity=0.298 Sum_probs=25.2
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcCC
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMSHE 59 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~~~ 59 (352)
+..-++++|++|+|||.||..+.+++.+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~ 132 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKA 132 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 44668999999999999999999998844
No 167
>PRK06921 hypothetical protein; Provisional
Probab=98.03 E-value=8.1e-06 Score=69.90 Aligned_cols=37 Identities=19% Similarity=0.224 Sum_probs=28.7
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcCC-CcceeEee
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMSHE-FDGSSFLA 67 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~~~-~~~~~~~~ 67 (352)
....++++|++|+|||+|+..+++.+.+. ...++|+.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~ 153 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP 153 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE
Confidence 34678999999999999999999987655 33444443
No 168
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.02 E-value=0.00012 Score=69.67 Aligned_cols=52 Identities=15% Similarity=0.201 Sum_probs=42.5
Q ss_pred CCcCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcC
Q 045677 7 IPKELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSH 58 (352)
Q Consensus 7 ~~~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~ 58 (352)
.-..++|+...++++.+.+..-......|+|+|++|+|||++|+.+.+....
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r 245 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPR 245 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCCC
Confidence 3457899999999999988764444567899999999999999999876543
No 169
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=5.8e-05 Score=70.77 Aligned_cols=53 Identities=25% Similarity=0.431 Sum_probs=43.9
Q ss_pred CcCcccccHHHHHHHHHHhc----CCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCC
Q 045677 8 PKELVGMESRLEKLKFLMCT----GSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEF 60 (352)
Q Consensus 8 ~~~~vGR~~~l~~l~~~l~~----~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~ 60 (352)
..+.+|-+.--+++.+++.- ++.+.++++++||+|+|||++++.++..+.+.|
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkF 466 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKF 466 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCce
Confidence 45567888878888887763 445679999999999999999999999988775
No 170
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.00 E-value=3e-05 Score=67.74 Aligned_cols=54 Identities=17% Similarity=0.167 Sum_probs=37.1
Q ss_pred cccHHHHHHHHHHhcCC--CCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEe
Q 045677 13 GMESRLEKLKFLMCTGS--NDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFL 66 (352)
Q Consensus 13 GR~~~l~~l~~~l~~~~--~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~ 66 (352)
+|...++...+++..-. ...+-+.|+|++|+|||.|+..+++.+......+.|+
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~ 190 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLL 190 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 45455555566666311 2346789999999999999999999986554444444
No 171
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=98.00 E-value=0.00026 Score=62.16 Aligned_cols=48 Identities=15% Similarity=0.043 Sum_probs=34.2
Q ss_pred EEecCCCCHhHHHHHHHhhhcCCCCCc-hhHHHHHHHHHHHcCCCchhH
Q 045677 164 VYKLEALNFDEAFRLFCLKAFDTYKPL-EEYLELAKCFVKYASGLPLAV 211 (352)
Q Consensus 164 ~~~l~~l~~~e~~~ll~~~~~~~~~~~-~~~~~~~~~i~~~~~G~Pl~i 211 (352)
.+++++++.+|+..+++-.....-... ...+...+++...++|||.-+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 789999999999999886552222211 234566777777889999754
No 172
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.99 E-value=0.00016 Score=59.07 Aligned_cols=54 Identities=22% Similarity=0.334 Sum_probs=41.4
Q ss_pred cCcccccHHHHHHHHHHhc--CCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcc
Q 045677 9 KELVGMESRLEKLKFLMCT--GSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDG 62 (352)
Q Consensus 9 ~~~vGR~~~l~~l~~~l~~--~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~ 62 (352)
..++|-+...+.|.+.-.. .+-...-|++||.-|+|||+|++.+...+...+..
T Consensus 60 ~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glr 115 (287)
T COG2607 60 ADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLR 115 (287)
T ss_pred HHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCe
Confidence 4578888888888764442 23345679999999999999999999988776544
No 173
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.98 E-value=3.2e-05 Score=69.95 Aligned_cols=46 Identities=26% Similarity=0.309 Sum_probs=38.3
Q ss_pred cCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcC
Q 045677 9 KELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSH 58 (352)
Q Consensus 9 ~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~ 58 (352)
.+.++.+..++.+...+..+ +.+.++|++|+|||++|+.++..+..
T Consensus 175 ~d~~i~e~~le~l~~~L~~~----~~iil~GppGtGKT~lA~~la~~l~~ 220 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK----KNIILQGPPGVGKTFVARRLAYLLTG 220 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHHHhcC
Confidence 45778888999998888843 56888999999999999999988754
No 174
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.98 E-value=5.4e-05 Score=62.53 Aligned_cols=172 Identities=16% Similarity=0.216 Sum_probs=94.2
Q ss_pred cCcccccHHHH---HHHHHHhcCC----CCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHH
Q 045677 9 KELVGMESRLE---KLKFLMCTGS----NDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVIS 81 (352)
Q Consensus 9 ~~~vGR~~~l~---~l~~~l~~~~----~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (352)
++.||.+..-+ -+.+.|.+.. =.++-|+.+||+|+|||-+|+.++...+-.+ ..+.+ .
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~----l~vka----------t- 185 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPL----LLVKA----------T- 185 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCce----EEech----------H-
Confidence 34577765554 3455666421 2368899999999999999999997755332 11110 0
Q ss_pred HHHHHHHHHhcccCCCccchhhhHHHHHhhhCCceEEEEEeCCCCh--------------hhhhhhhCCCCCC--CCCce
Q 045677 82 LQKQLLSDLLMLADNSIRNVYDGVNMIGSRLRHKKVLLLIDDVADV--------------EQLRGLFGKRDWF--GLGSM 145 (352)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~--------------~~~~~l~~~~~~~--~~~~~ 145 (352)
+++-...+ ... ...-+.....-...++++.||+++.. +.+..++..+... +.|.+
T Consensus 186 ---~liGehVG---dga---r~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVv 256 (368)
T COG1223 186 ---ELIGEHVG---DGA---RRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVV 256 (368)
T ss_pred ---HHHHHHhh---hHH---HHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceE
Confidence 11111111 001 11112222333457999999998532 2245555555422 34555
Q ss_pred EEEEeCchhHhhh---cCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCC
Q 045677 146 IIITTRDEHLLKL---HRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGL 207 (352)
Q Consensus 146 iiitsr~~~~~~~---~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 207 (352)
.|.+|.+..++.. .++...++..--+.+|-..+++..+.. .+.+ .....+.++.+++|.
T Consensus 257 tIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~-~Plp--v~~~~~~~~~~t~g~ 318 (368)
T COG1223 257 TIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKK-FPLP--VDADLRYLAAKTKGM 318 (368)
T ss_pred EEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHh-CCCc--cccCHHHHHHHhCCC
Confidence 5555554443322 244556777777888888888776621 1111 113366777777775
No 175
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=7.3e-05 Score=69.53 Aligned_cols=153 Identities=15% Similarity=0.204 Sum_probs=88.5
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHH
Q 045677 30 NDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQKQLLSDLLMLADNSIRNVYDGVNMIG 109 (352)
Q Consensus 30 ~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (352)
+.++-|+++||||+|||++|+.++..-.-.|-.+ . + .++...+.+.+. ..+-+.+.
T Consensus 466 ~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsv---k---------g------pEL~sk~vGeSE------r~ir~iF~ 521 (693)
T KOG0730|consen 466 SPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSV---K---------G------PELFSKYVGESE------RAIREVFR 521 (693)
T ss_pred CCCceEEEECCCCcchHHHHHHHhhhhcCCeeec---c---------C------HHHHHHhcCchH------HHHHHHHH
Confidence 5678899999999999999999998866554211 0 0 123333222211 12223334
Q ss_pred hhhCCceEEEEEeCCCChhh-------------hhhhhCCCCCCCCCce-EEE--EeCchhH----hhhcCcccEEecCC
Q 045677 110 SRLRHKKVLLLIDDVADVEQ-------------LRGLFGKRDWFGLGSM-III--TTRDEHL----LKLHRVEEVYKLEA 169 (352)
Q Consensus 110 ~~l~~~~~llvlDd~~~~~~-------------~~~l~~~~~~~~~~~~-iii--tsr~~~~----~~~~~~~~~~~l~~ 169 (352)
+.-+-.+.++.||+++.... +..++..+.-...... +|| |.|.+.+ ....+....+.++.
T Consensus 522 kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVpl 601 (693)
T KOG0730|consen 522 KARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPL 601 (693)
T ss_pred HHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecC
Confidence 44455789999999964321 3344444432222222 333 4554433 22234677888877
Q ss_pred CCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCch
Q 045677 170 LNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPL 209 (352)
Q Consensus 170 l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl 209 (352)
=+.+.-.++|+.+...- ...+. -.+++++++++|+--
T Consensus 602 PD~~aR~~Ilk~~~kkm-p~~~~--vdl~~La~~T~g~SG 638 (693)
T KOG0730|consen 602 PDLEARLEILKQCAKKM-PFSED--VDLEELAQATEGYSG 638 (693)
T ss_pred ccHHHHHHHHHHHHhcC-CCCcc--ccHHHHHHHhccCCh
Confidence 77777788888777332 22211 346788888888754
No 176
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.97 E-value=9.3e-05 Score=65.46 Aligned_cols=103 Identities=11% Similarity=0.076 Sum_probs=57.7
Q ss_pred HHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCC-cceeEeeeccccccCCCcHHHHHHHHHHHHhcccCCC
Q 045677 19 EKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEF-DGSSFLADVRERCDKEGSVISLQKQLLSDLLMLADNS 97 (352)
Q Consensus 19 ~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 97 (352)
..+.+.+..-. ..+-+.|+|++|+|||||+..+++.+.... +..+++..+ ......+.++.+.+...+.......
T Consensus 121 ~RvID~l~PiG-kGQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lI---gER~~EV~df~~~i~~~Vvast~de 196 (380)
T PRK12608 121 MRVVDLVAPIG-KGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLI---DERPEEVTDMRRSVKGEVYASTFDR 196 (380)
T ss_pred HhhhhheeecC-CCceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEe---cCCCCCHHHHHHHHhhhEEeecCCC
Confidence 34566555432 234568999999999999999999876543 332333333 2333333566666655443322222
Q ss_pred ccch----h-hhHHHHHhhh-CCceEEEEEeCCC
Q 045677 98 IRNV----Y-DGVNMIGSRL-RHKKVLLLIDDVA 125 (352)
Q Consensus 98 ~~~~----~-~~~~~~~~~l-~~~~~llvlDd~~ 125 (352)
.... . ........+. .+++++||+|++.
T Consensus 197 ~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDslt 230 (380)
T PRK12608 197 PPDEHIRVAELVLERAKRLVEQGKDVVILLDSLT 230 (380)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcH
Confidence 1111 1 1111111111 4789999999994
No 177
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.97 E-value=5.4e-05 Score=74.44 Aligned_cols=53 Identities=15% Similarity=0.281 Sum_probs=41.8
Q ss_pred CcCcccccHHHHHHHHHHhc----CCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCC
Q 045677 8 PKELVGMESRLEKLKFLMCT----GSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEF 60 (352)
Q Consensus 8 ~~~~vGR~~~l~~l~~~l~~----~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~ 60 (352)
....+|-+...+.+.+++.. ......+++++||+|+|||++++.++..+...|
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~ 377 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKY 377 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 45678988888888887773 122456899999999999999999998876553
No 178
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.97 E-value=1.4e-05 Score=70.32 Aligned_cols=55 Identities=16% Similarity=0.231 Sum_probs=45.3
Q ss_pred CCCCCcCcccccHHHHHHHHHHhcC----CCCeEEEEEEcCCCCcHHHHHHHHHHHhcC
Q 045677 4 ELEIPKELVGMESRLEKLKFLMCTG----SNDVRTIGIWGMGGLGKTTLARVVYDLMSH 58 (352)
Q Consensus 4 ~~~~~~~~vGR~~~l~~l~~~l~~~----~~~~~~v~I~G~~GiGKT~La~~~~~~~~~ 58 (352)
++...+.++|-+..++++.+++... +...++++|+||+|+||||||..++..+..
T Consensus 46 y~~F~~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 46 YRFFDHDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred ccccchhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3444558999999999999998862 234688999999999999999999988755
No 179
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.96 E-value=7.3e-06 Score=63.03 Aligned_cols=47 Identities=23% Similarity=0.289 Sum_probs=35.4
Q ss_pred ccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcC
Q 045677 12 VGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSH 58 (352)
Q Consensus 12 vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~ 58 (352)
||+...++++.+.+..-......|+|+|++|+||+.+|+.+...-..
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~ 47 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGR 47 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCc
Confidence 68888899998888764344567899999999999999987765443
No 180
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.95 E-value=0.00014 Score=71.14 Aligned_cols=50 Identities=18% Similarity=0.216 Sum_probs=39.7
Q ss_pred CcCcccccHHHHHHHHHHhcC-------CCCeEEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 8 PKELVGMESRLEKLKFLMCTG-------SNDVRTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 8 ~~~~vGR~~~l~~l~~~l~~~-------~~~~~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
...++|.+..++.|.+.+... +.....++++||+|+|||.+|+.++..+.
T Consensus 457 ~~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~ 513 (758)
T PRK11034 457 KMLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_pred cceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 456799999999998887731 12234688999999999999999998874
No 181
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=0.00028 Score=59.55 Aligned_cols=173 Identities=19% Similarity=0.175 Sum_probs=92.6
Q ss_pred CcccccHHHHHHHHHHh----------cCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcH
Q 045677 10 ELVGMESRLEKLKFLMC----------TGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSV 79 (352)
Q Consensus 10 ~~vGR~~~l~~l~~~l~----------~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (352)
..-|-+..-+.|.+..- .+...-+-++++||+|+|||.||+.++-+... .|++ .++
T Consensus 134 DVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnS-----TFFS----vSS----- 199 (439)
T KOG0739|consen 134 DVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANS-----TFFS----VSS----- 199 (439)
T ss_pred hhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCC-----ceEE----eeh-----
Confidence 34566666666655332 23334577999999999999999999976442 2332 111
Q ss_pred HHHHHHHHHHHhcccCCCccchhhhHHHHHhh-hCCceEEEEEeCCCCh---------hhhh----hhhCCCC---CCCC
Q 045677 80 ISLQKQLLSDLLMLADNSIRNVYDGVNMIGSR-LRHKKVLLLIDDVADV---------EQLR----GLFGKRD---WFGL 142 (352)
Q Consensus 80 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~llvlDd~~~~---------~~~~----~l~~~~~---~~~~ 142 (352)
. .+.+.+.+.+ +.++..+.+. -.+++-+|+||+++.. +..+ +++-... ....
T Consensus 200 S----DLvSKWmGES-------EkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~ 268 (439)
T KOG0739|consen 200 S----DLVSKWMGES-------EKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDND 268 (439)
T ss_pred H----HHHHHHhccH-------HHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCC
Confidence 1 2333333322 2233333332 3568999999999532 1122 2222211 1123
Q ss_pred CceEEEEeCchhHhhh---cCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCch
Q 045677 143 GSMIIITTRDEHLLKL---HRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPL 209 (352)
Q Consensus 143 ~~~iiitsr~~~~~~~---~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl 209 (352)
+..++=.|..+-++.. -++...+.+ ||+...++.-..+...+. .+....+...+.+..+++|+--
T Consensus 269 gvLVLgATNiPw~LDsAIRRRFekRIYI-PLPe~~AR~~MF~lhlG~-tp~~LT~~d~~eL~~kTeGySG 336 (439)
T KOG0739|consen 269 GVLVLGATNIPWVLDSAIRRRFEKRIYI-PLPEAHARARMFKLHLGD-TPHVLTEQDFKELARKTEGYSG 336 (439)
T ss_pred ceEEEecCCCchhHHHHHHHHhhcceec-cCCcHHHhhhhheeccCC-CccccchhhHHHHHhhcCCCCc
Confidence 3334334443322222 133445655 666666766555555343 3334455678889999988753
No 182
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=8.1e-05 Score=71.61 Aligned_cols=130 Identities=17% Similarity=0.215 Sum_probs=77.5
Q ss_pred CcCcccccHHHHHHHHHHhc-------CCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHH
Q 045677 8 PKELVGMESRLEKLKFLMCT-------GSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVI 80 (352)
Q Consensus 8 ~~~~vGR~~~l~~l~~~l~~-------~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (352)
....+|.+..+..+.+.+.. .+.+....++.||+|||||.||++++..+-..-...+-+. ++ .
T Consensus 490 ~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~D-MS---------E 559 (786)
T COG0542 490 KKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRID-MS---------E 559 (786)
T ss_pred hcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeec-hH---------H
Confidence 45678999999999888774 2223456778999999999999999988754433333332 21 1
Q ss_pred HHHHHHHHHHhcccCCC--ccchhhhHHHHHhhhCCceE-EEEEeCCCC--hhhhhhhhCCCCCC-----------CCCc
Q 045677 81 SLQKQLLSDLLMLADNS--IRNVYDGVNMIGSRLRHKKV-LLLIDDVAD--VEQLRGLFGKRDWF-----------GLGS 144 (352)
Q Consensus 81 ~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~-llvlDd~~~--~~~~~~l~~~~~~~-----------~~~~ 144 (352)
..-+.-.+.+.+.++.- -..... +-+....+|+ +|.||+++. .+-++-|+..+... ..++
T Consensus 560 y~EkHsVSrLIGaPPGYVGyeeGG~----LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNt 635 (786)
T COG0542 560 YMEKHSVSRLIGAPPGYVGYEEGGQ----LTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNT 635 (786)
T ss_pred HHHHHHHHHHhCCCCCCceeccccc----hhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEeccee
Confidence 22233444444433321 122222 3333445655 899999963 44456666555432 1255
Q ss_pred eEEEEeC
Q 045677 145 MIIITTR 151 (352)
Q Consensus 145 ~iiitsr 151 (352)
.||+||.
T Consensus 636 iIImTSN 642 (786)
T COG0542 636 IIIMTSN 642 (786)
T ss_pred EEEEecc
Confidence 5677775
No 183
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.93 E-value=4.8e-05 Score=63.81 Aligned_cols=48 Identities=19% Similarity=0.169 Sum_probs=34.9
Q ss_pred HHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEee
Q 045677 20 KLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLA 67 (352)
Q Consensus 20 ~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~ 67 (352)
.|-+.|..+-....++.|+|++|+|||+|+.+++..........+|+.
T Consensus 11 ~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~ 58 (225)
T PRK09361 11 MLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYID 58 (225)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 344445433344689999999999999999999988655555566664
No 184
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=97.92 E-value=0.0005 Score=60.97 Aligned_cols=49 Identities=18% Similarity=0.140 Sum_probs=40.3
Q ss_pred CcCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHh
Q 045677 8 PKELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLM 56 (352)
Q Consensus 8 ~~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~ 56 (352)
.+.++|+...++++.+.+..-......|+|+|++|+||+++|+.+....
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s 53 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLS 53 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhC
Confidence 3568999999999999888644445679999999999999999887543
No 185
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.91 E-value=0.0001 Score=68.90 Aligned_cols=49 Identities=27% Similarity=0.368 Sum_probs=38.3
Q ss_pred cCcccccHHHHHHHHHHhc---CCCCeEEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 9 KELVGMESRLEKLKFLMCT---GSNDVRTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 9 ~~~vGR~~~l~~l~~~l~~---~~~~~~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
.+++--..-++++.+||.. +....++++++||+|+||||.++.+++.+.
T Consensus 19 ~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg 70 (519)
T PF03215_consen 19 DELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG 70 (519)
T ss_pred HHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3444445678888899886 333467899999999999999999998864
No 186
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=0.00044 Score=66.31 Aligned_cols=177 Identities=16% Similarity=0.253 Sum_probs=99.4
Q ss_pred CcccccHHHH---HHHHHHhc-------CCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcH
Q 045677 10 ELVGMESRLE---KLKFLMCT-------GSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSV 79 (352)
Q Consensus 10 ~~vGR~~~l~---~l~~~l~~-------~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (352)
++.|-+...+ ++..+|++ +..-++=|+++||+|+|||-||+.++-+..-. |+.. +.
T Consensus 312 DVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVP-----F~sv----SG----- 377 (774)
T KOG0731|consen 312 DVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-----FFSV----SG----- 377 (774)
T ss_pred cccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCc-----eeee----ch-----
Confidence 4556655444 55555654 22235779999999999999999999664432 2221 11
Q ss_pred HHHHHHHHHHHhcccCCCccchhhhHHHHHhhhCCceEEEEEeCCCCh-----------------hhhhhhhCCCCCCCC
Q 045677 80 ISLQKQLLSDLLMLADNSIRNVYDGVNMIGSRLRHKKVLLLIDDVADV-----------------EQLRGLFGKRDWFGL 142 (352)
Q Consensus 80 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~-----------------~~~~~l~~~~~~~~~ 142 (352)
. ++...+.+... ...-+.+...-...|+++.+|+++.. ..+..++..+.-+..
T Consensus 378 S----EFvE~~~g~~a------srvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~ 447 (774)
T KOG0731|consen 378 S----EFVEMFVGVGA------SRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFET 447 (774)
T ss_pred H----HHHHHhcccch------HHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcC
Confidence 1 12222222111 11112233333567899999998431 124555544442222
Q ss_pred Cc-eEEE-EeC-ch----hHhhhcCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchhHH
Q 045677 143 GS-MIII-TTR-DE----HLLKLHRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLAVD 212 (352)
Q Consensus 143 ~~-~iii-tsr-~~----~~~~~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~ 212 (352)
.. -|++ +|. .+ .+....+++..+.+..=+.....++|..++...... ....+..+ ++..+-|++-+.-
T Consensus 448 ~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~-~e~~dl~~-~a~~t~gf~gadl 522 (774)
T KOG0731|consen 448 SKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD-DEDVDLSK-LASLTPGFSGADL 522 (774)
T ss_pred CCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC-cchhhHHH-HHhcCCCCcHHHH
Confidence 22 3333 333 22 223334667788888888888899888877544433 23334444 9999999887653
No 187
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=0.00024 Score=65.60 Aligned_cols=130 Identities=18% Similarity=0.281 Sum_probs=79.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHHhh
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQKQLLSDLLMLADNSIRNVYDGVNMIGSR 111 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (352)
+.-|+++||+|+|||-||+.++++.+-+| +. + .+. ++++.+.+.+. ...-..+.+.
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~NF-----is-V------KGP------ELlNkYVGESE------rAVR~vFqRA 600 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGANF-----IS-V------KGP------ELLNKYVGESE------RAVRQVFQRA 600 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCce-----Ee-e------cCH------HHHHHHhhhHH------HHHHHHHHHh
Confidence 45588999999999999999999877664 21 1 111 44444443322 2222334445
Q ss_pred hCCceEEEEEeCCCCh-------------hhhhhhhCCCCCC--CCCceEEE-EeCchhH----hhhcCcccEEecCCCC
Q 045677 112 LRHKKVLLLIDDVADV-------------EQLRGLFGKRDWF--GLGSMIII-TTRDEHL----LKLHRVEEVYKLEALN 171 (352)
Q Consensus 112 l~~~~~llvlDd~~~~-------------~~~~~l~~~~~~~--~~~~~iii-tsr~~~~----~~~~~~~~~~~l~~l~ 171 (352)
-...+++|+||+++.. .-+..++..+.-. ..+..||- |.|.+.+ +...+....+.+..-+
T Consensus 601 R~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn 680 (802)
T KOG0733|consen 601 RASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPN 680 (802)
T ss_pred hcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCC
Confidence 5678999999999532 1144555444311 23444554 4454433 2223556677787778
Q ss_pred HhHHHHHHHhhhcC
Q 045677 172 FDEAFRLFCLKAFD 185 (352)
Q Consensus 172 ~~e~~~ll~~~~~~ 185 (352)
.+|-.++++.....
T Consensus 681 ~~eR~~ILK~~tkn 694 (802)
T KOG0733|consen 681 AEERVAILKTITKN 694 (802)
T ss_pred HHHHHHHHHHHhcc
Confidence 88888888877653
No 188
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=97.87 E-value=0.0022 Score=55.98 Aligned_cols=52 Identities=13% Similarity=0.109 Sum_probs=40.0
Q ss_pred CCCCcCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCC
Q 045677 5 LEIPKELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEF 60 (352)
Q Consensus 5 ~~~~~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~ 60 (352)
|...+.|+=.......+..++..+ +.++|.|++|+|||+++.+++..+...+
T Consensus 41 p~~d~~y~f~~~~~~~vl~~l~~~----~~ilL~G~pGtGKTtla~~lA~~l~~~~ 92 (327)
T TIGR01650 41 PDIDPAYLFDKATTKAICAGFAYD----RRVMVQGYHGTGKSTHIEQIAARLNWPC 92 (327)
T ss_pred CCCCCCccCCHHHHHHHHHHHhcC----CcEEEEeCCCChHHHHHHHHHHHHCCCe
Confidence 334455666666777788877632 4589999999999999999999987554
No 189
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.87 E-value=7.2e-05 Score=62.44 Aligned_cols=49 Identities=18% Similarity=0.215 Sum_probs=35.2
Q ss_pred HHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEee
Q 045677 19 EKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLA 67 (352)
Q Consensus 19 ~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~ 67 (352)
..|-..+..+=....++.|+|++|+|||+|+.+++..........+|+.
T Consensus 6 ~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 6 KGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred hHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3445555533345689999999999999999999988755544555553
No 190
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=0.00023 Score=64.76 Aligned_cols=43 Identities=26% Similarity=0.261 Sum_probs=32.2
Q ss_pred cHHHHHHHHHHhcCC-------CCeEEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 15 ESRLEKLKFLMCTGS-------NDVRTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 15 ~~~l~~l~~~l~~~~-------~~~~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
..|++++.++|.... .=++-|+++||+|+|||-||+.++-+..
T Consensus 313 K~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~ 362 (752)
T KOG0734|consen 313 KQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAG 362 (752)
T ss_pred HHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccC
Confidence 356777777887521 1256699999999999999999985543
No 191
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.84 E-value=6.8e-05 Score=61.01 Aligned_cols=129 Identities=19% Similarity=0.150 Sum_probs=58.5
Q ss_pred ccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHh--cCCCcceeEeeeccccccCCCc-HHH-------HH
Q 045677 14 MESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLM--SHEFDGSSFLADVRERCDKEGS-VIS-------LQ 83 (352)
Q Consensus 14 R~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~-------l~ 83 (352)
+..+-+...+.+.. ..++++.|++|+|||.||...+-+. ...|...++.-..-......+. +-+ .+
T Consensus 5 ~~~~Q~~~~~al~~----~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~ 80 (205)
T PF02562_consen 5 KNEEQKFALDALLN----NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYL 80 (205)
T ss_dssp -SHHHHHHHHHHHH-----SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTT
T ss_pred CCHHHHHHHHHHHh----CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHH
Confidence 44455555555552 3689999999999999998887653 3445555554322111110000 000 01
Q ss_pred HHHHHHHhcccCCCccchhhhHHHH------HhhhCCc---eEEEEEeCC--CChhhhhhhhCCCCCCCCCceEEEEeC
Q 045677 84 KQLLSDLLMLADNSIRNVYDGVNMI------GSRLRHK---KVLLLIDDV--ADVEQLRGLFGKRDWFGLGSMIIITTR 151 (352)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~---~~llvlDd~--~~~~~~~~l~~~~~~~~~~~~iiitsr 151 (352)
.-+...+.... .....+...+.- ..+++++ +.+||+|++ .+..+++.++..+ +.++++|++.-
T Consensus 81 ~p~~d~l~~~~--~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR~---g~~skii~~GD 154 (205)
T PF02562_consen 81 RPIYDALEELF--GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTRI---GEGSKIIITGD 154 (205)
T ss_dssp HHHHHHHTTTS---TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTTB----TT-EEEEEE-
T ss_pred HHHHHHHHHHh--ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHccc---CCCcEEEEecC
Confidence 11111111100 001111111000 1123343 579999999 4667888888775 67899999875
No 192
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=97.83 E-value=0.00094 Score=63.10 Aligned_cols=53 Identities=21% Similarity=0.264 Sum_probs=44.4
Q ss_pred CCcCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCC
Q 045677 7 IPKELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHE 59 (352)
Q Consensus 7 ~~~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~ 59 (352)
.+..++|+...++++.+.+..-......|+|+|++|+|||.+|+.+.......
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~ 237 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRA 237 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCCcC
Confidence 45679999999999999888755556789999999999999999998875433
No 193
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.82 E-value=0.00088 Score=63.04 Aligned_cols=201 Identities=11% Similarity=0.068 Sum_probs=110.0
Q ss_pred CCcCcccccHHHHHHHHHHhc---CCCCeEEEEEEcCCCCcHHHHHHHHHHHhc---CC--CcceeEeeeccccccCCCc
Q 045677 7 IPKELVGMESRLEKLKFLMCT---GSNDVRTIGIWGMGGLGKTTLARVVYDLMS---HE--FDGSSFLADVRERCDKEGS 78 (352)
Q Consensus 7 ~~~~~vGR~~~l~~l~~~l~~---~~~~~~~v~I~G~~GiGKT~La~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~ 78 (352)
.|..+-+|+.|..++..++.. .++...++.|+|.+|+|||..+..+.+.++ +. -....|+. +. .-....
T Consensus 394 vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yve-IN--gm~l~~ 470 (767)
T KOG1514|consen 394 VPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVE-IN--GLRLAS 470 (767)
T ss_pred ccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEE-Ec--ceeecC
Confidence 567788999999999998885 224456899999999999999999998754 11 22222221 11 111111
Q ss_pred HHHHHHHHHHHHhcccCCCccchhhhHHHHHhh-hCCceEEEEEeCCCCh-----hhhhhhhCCCCCCCCCceEEEEe-C
Q 045677 79 VISLQKQLLSDLLMLADNSIRNVYDGVNMIGSR-LRHKKVLLLIDDVADV-----EQLRGLFGKRDWFGLGSMIIITT-R 151 (352)
Q Consensus 79 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~llvlDd~~~~-----~~~~~l~~~~~~~~~~~~iiits-r 151 (352)
+.++...+...+.+.........+.+...+... -...++++++|+++.. +-+-.++.... ..+++++|.+ -
T Consensus 471 ~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt--~~~sKLvvi~Ia 548 (767)
T KOG1514|consen 471 PREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPT--LKNSKLVVIAIA 548 (767)
T ss_pred HHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCc--CCCCceEEEEec
Confidence 356666666665444333222333322222210 1246789999998543 33444443332 2455544322 1
Q ss_pred ch-----hHhhhc----CcccEEecCCCCHhHHHHHHHhhhcCCCCCc-hhHHHHHHHHHHHcCCCchhHH
Q 045677 152 DE-----HLLKLH----RVEEVYKLEALNFDEAFRLFCLKAFDTYKPL-EEYLELAKCFVKYASGLPLAVD 212 (352)
Q Consensus 152 ~~-----~~~~~~----~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~-~~~~~~~~~i~~~~~G~Pl~i~ 212 (352)
+. .+.... -....+...|.+.++..+++..++.+..... ...+-++++++..+|---.++.
T Consensus 549 NTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRrald 619 (767)
T KOG1514|consen 549 NTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALD 619 (767)
T ss_pred ccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHH
Confidence 11 111100 1235688899999999998888775442221 1222333444444444444443
No 194
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=97.82 E-value=5.2e-05 Score=60.14 Aligned_cols=47 Identities=23% Similarity=0.290 Sum_probs=36.1
Q ss_pred cccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 11 LVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 11 ~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
+||....++++.+.+..-......|+|+|++|+||+.+|+.+.+.-.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~ 47 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNSP 47 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCST
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhh
Confidence 58899999999988886334447788999999999999999987543
No 195
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.82 E-value=0.00011 Score=58.10 Aligned_cols=33 Identities=27% Similarity=0.273 Sum_probs=26.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhcCCCcceeEee
Q 045677 35 IGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLA 67 (352)
Q Consensus 35 v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~ 67 (352)
++|+|++|+|||+++..++..........+|+.
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 34 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVD 34 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence 679999999999999999988766544555554
No 196
>PHA00729 NTP-binding motif containing protein
Probab=97.81 E-value=0.00023 Score=58.69 Aligned_cols=27 Identities=33% Similarity=0.260 Sum_probs=23.5
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
+...++|+|++|+|||+||..++..+.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 446789999999999999999998764
No 197
>PRK04296 thymidine kinase; Provisional
Probab=97.81 E-value=4.3e-05 Score=62.13 Aligned_cols=111 Identities=20% Similarity=0.072 Sum_probs=59.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHHHHHHHHhcccC-CCccchhhhHHHHHhh
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQKQLLSDLLMLAD-NSIRNVYDGVNMIGSR 111 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 111 (352)
.+++|+|++|+||||++..++.+...+.....++. . ........ . .+...+..... .......++...+.+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k-~-~~d~~~~~-~----~i~~~lg~~~~~~~~~~~~~~~~~~~~- 74 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFK-P-AIDDRYGE-G----KVVSRIGLSREAIPVSSDTDIFELIEE- 74 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEe-c-cccccccC-C----cEecCCCCcccceEeCChHHHHHHHHh-
Confidence 57889999999999999999988755543333331 1 00111111 1 12222211000 011233344444444
Q ss_pred hCCceEEEEEeCCCC--hhhhhhhhCCCCCCCCCceEEEEeCch
Q 045677 112 LRHKKVLLLIDDVAD--VEQLRGLFGKRDWFGLGSMIIITTRDE 153 (352)
Q Consensus 112 l~~~~~llvlDd~~~--~~~~~~l~~~~~~~~~~~~iiitsr~~ 153 (352)
..++.-+||+|++.- .+++.++...+. ..+..+|+|.++.
T Consensus 75 ~~~~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~ 116 (190)
T PRK04296 75 EGEKIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDT 116 (190)
T ss_pred hCCCCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCc
Confidence 334556999999943 333444444432 4577899998863
No 198
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.81 E-value=4e-05 Score=63.54 Aligned_cols=38 Identities=16% Similarity=0.211 Sum_probs=30.9
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEee
Q 045677 30 NDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLA 67 (352)
Q Consensus 30 ~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~ 67 (352)
....++.|+|++|+|||+|+.+++..........+|+.
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~ 47 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYID 47 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 34689999999999999999999988755555666665
No 199
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.81 E-value=0.00017 Score=71.91 Aligned_cols=51 Identities=16% Similarity=0.284 Sum_probs=39.5
Q ss_pred CCcCcccccHHHHHHHHHHhc-------CCCCeEEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 7 IPKELVGMESRLEKLKFLMCT-------GSNDVRTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 7 ~~~~~vGR~~~l~~l~~~l~~-------~~~~~~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
+...++|.+..++.+...+.. .+.....++++||+|+|||+||..+++.+-
T Consensus 507 L~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~ 564 (821)
T CHL00095 507 LHKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFF 564 (821)
T ss_pred hcCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhc
Confidence 356789999999999887763 111224567899999999999999998864
No 200
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.80 E-value=2.9e-05 Score=64.63 Aligned_cols=34 Identities=32% Similarity=0.500 Sum_probs=28.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEee
Q 045677 34 TIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLA 67 (352)
Q Consensus 34 ~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~ 67 (352)
-++|.|++|+|||+|+..+...+.+.|...+++.
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t 48 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLIT 48 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEe
Confidence 4679999999999999999999998886555553
No 201
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=0.00046 Score=64.97 Aligned_cols=151 Identities=19% Similarity=0.246 Sum_probs=83.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHHhhh
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQKQLLSDLLMLADNSIRNVYDGVNMIGSRL 112 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 112 (352)
.-|+++||+|+|||.||.+++....-+ |++ + .+. +++..+.+.+. +..-+.+.+..
T Consensus 702 ~giLLyGppGcGKT~la~a~a~~~~~~-----fis-v------KGP------ElL~KyIGaSE------q~vR~lF~rA~ 757 (952)
T KOG0735|consen 702 TGILLYGPPGCGKTLLASAIASNSNLR-----FIS-V------KGP------ELLSKYIGASE------QNVRDLFERAQ 757 (952)
T ss_pred cceEEECCCCCcHHHHHHHHHhhCCee-----EEE-e------cCH------HHHHHHhcccH------HHHHHHHHHhh
Confidence 448899999999999999998664332 222 1 111 34444333222 22233445555
Q ss_pred CCceEEEEEeCCCChh-------------hhhhhhCCCCC--CCCCceEEE-EeCchhHhhh----cCcccEEecCCCCH
Q 045677 113 RHKKVLLLIDDVADVE-------------QLRGLFGKRDW--FGLGSMIII-TTRDEHLLKL----HRVEEVYKLEALNF 172 (352)
Q Consensus 113 ~~~~~llvlDd~~~~~-------------~~~~l~~~~~~--~~~~~~iii-tsr~~~~~~~----~~~~~~~~l~~l~~ 172 (352)
.-+|+++.||++++.. -+..++..+.- .-.|..|+- |||.+-+.+. .+....+.=+.-+.
T Consensus 758 ~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~ 837 (952)
T KOG0735|consen 758 SAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDE 837 (952)
T ss_pred ccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCc
Confidence 6799999999996431 25566665541 123444553 6775533222 23333333333345
Q ss_pred hHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchh
Q 045677 173 DEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLA 210 (352)
Q Consensus 173 ~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~ 210 (352)
.|-.++++...-.... .....++.++.+++|+.-|
T Consensus 838 ~eRl~il~~ls~s~~~---~~~vdl~~~a~~T~g~tgA 872 (952)
T KOG0735|consen 838 PERLEILQVLSNSLLK---DTDVDLECLAQKTDGFTGA 872 (952)
T ss_pred HHHHHHHHHHhhccCC---ccccchHHHhhhcCCCchh
Confidence 5556666554311111 1234577788999998754
No 202
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.76 E-value=9.8e-05 Score=57.50 Aligned_cols=118 Identities=13% Similarity=0.043 Sum_probs=58.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHHHHHHHH-----hcccC---CCcc----c
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQKQLLSDL-----LMLAD---NSIR----N 100 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~~---~~~~----~ 100 (352)
..+.|++..|.||||+|...+-+...+.....++.-+... ...+. ...++.+- .+ ..... .+.. .
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~-~~~gE-~~~l~~l~-~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGG-WKYGE-LKALERLP-NIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCC-CccCH-HHHHHhCC-CcEEEECCCCCccCCCChHHHHHH
Confidence 4678899999999999988887755554444443322221 01111 22222220 00 00000 0000 1
Q ss_pred hhhhHHHHHhhhC-CceEEEEEeCCC-----ChhhhhhhhCCCCCCCCCceEEEEeCch
Q 045677 101 VYDGVNMIGSRLR-HKKVLLLIDDVA-----DVEQLRGLFGKRDWFGLGSMIIITTRDE 153 (352)
Q Consensus 101 ~~~~~~~~~~~l~-~~~~llvlDd~~-----~~~~~~~l~~~~~~~~~~~~iiitsr~~ 153 (352)
........++.+. +.-=++|||++- ..-..+.+...+...+.+..+|+|+|+.
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 1112222233333 345699999982 2222333444444446678999999975
No 203
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.75 E-value=0.00022 Score=56.92 Aligned_cols=28 Identities=32% Similarity=0.377 Sum_probs=24.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcCCC
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLMSHEF 60 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~~~~~ 60 (352)
+++.++|+||+||||+|+++++.+++..
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i 29 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEI 29 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhh
Confidence 5788999999999999999999877663
No 204
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=97.74 E-value=0.0018 Score=63.59 Aligned_cols=50 Identities=22% Similarity=0.271 Sum_probs=40.4
Q ss_pred cCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcC
Q 045677 9 KELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSH 58 (352)
Q Consensus 9 ~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~ 58 (352)
..++|+...++.+.+.+..-......|+|+|++|+|||.+|+.+......
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r 425 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGR 425 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCC
Confidence 36899999999988777753334467999999999999999999876543
No 205
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.73 E-value=0.00023 Score=60.12 Aligned_cols=49 Identities=20% Similarity=0.064 Sum_probs=34.3
Q ss_pred HHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEee
Q 045677 19 EKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLA 67 (352)
Q Consensus 19 ~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~ 67 (352)
..|-+.|..+=....++.|+|++|+|||+|+.+++...........|+.
T Consensus 12 ~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~ 60 (234)
T PRK06067 12 EELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVIT 60 (234)
T ss_pred HHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEE
Confidence 3444555543345688999999999999999999876544444555554
No 206
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.73 E-value=0.0011 Score=60.78 Aligned_cols=42 Identities=21% Similarity=0.294 Sum_probs=34.4
Q ss_pred HHHHHHHHHHh-----cCCCCeEEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 16 SRLEKLKFLMC-----TGSNDVRTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 16 ~~l~~l~~~l~-----~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
.-+.++..||. .++-+.++++|+||+|+||||.++.++..+.
T Consensus 89 kKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskelg 135 (634)
T KOG1970|consen 89 KKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKELG 135 (634)
T ss_pred HhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhhC
Confidence 34677888888 4555678999999999999999999987753
No 207
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.72 E-value=0.00045 Score=57.97 Aligned_cols=40 Identities=28% Similarity=0.152 Sum_probs=29.1
Q ss_pred HHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCC
Q 045677 21 LKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEF 60 (352)
Q Consensus 21 l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~ 60 (352)
|-+.|..+-....++.|+|++|+|||+|+.+++.......
T Consensus 8 lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~ 47 (226)
T cd01393 8 LDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPG 47 (226)
T ss_pred HHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhccc
Confidence 3444443334468899999999999999999987754443
No 208
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.71 E-value=0.0003 Score=60.26 Aligned_cols=102 Identities=17% Similarity=0.105 Sum_probs=58.9
Q ss_pred HHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHHHHHHHHhcccCCC
Q 045677 18 LEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQKQLLSDLLMLADNS 97 (352)
Q Consensus 18 l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 97 (352)
++.|.+++.. ...+++|.|+.|+||||++..+...+.......+.+.+....... .. .+ ....
T Consensus 69 ~~~l~~~~~~---~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~-~~---------~q----~~v~ 131 (264)
T cd01129 69 LEIFRKLLEK---PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIP-GI---------NQ----VQVN 131 (264)
T ss_pred HHHHHHHHhc---CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCC-Cc---------eE----EEeC
Confidence 3445444442 236899999999999999999887765432233333221111000 00 00 0001
Q ss_pred ccchhhhHHHHHhhhCCceEEEEEeCCCChhhhhhhhCC
Q 045677 98 IRNVYDGVNMIGSRLRHKKVLLLIDDVADVEQLRGLFGK 136 (352)
Q Consensus 98 ~~~~~~~~~~~~~~l~~~~~llvlDd~~~~~~~~~l~~~ 136 (352)
..........+...+...+-.++++++.+.+....++..
T Consensus 132 ~~~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~~~~a 170 (264)
T cd01129 132 EKAGLTFARGLRAILRQDPDIIMVGEIRDAETAEIAVQA 170 (264)
T ss_pred CcCCcCHHHHHHHHhccCCCEEEeccCCCHHHHHHHHHH
Confidence 111123556677778888999999999888765554444
No 209
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.70 E-value=9.7e-05 Score=60.38 Aligned_cols=115 Identities=19% Similarity=0.180 Sum_probs=57.0
Q ss_pred HHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHHHHHHHHhcccCCC
Q 045677 18 LEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQKQLLSDLLMLADNS 97 (352)
Q Consensus 18 l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 97 (352)
.+.+...+.+ +.++++|.|++|+|||+++..+...+.... ..+.+. ++. ......+..... ..
T Consensus 7 ~~a~~~~l~~---~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g-~~v~~~-----apT----~~Aa~~L~~~~~----~~ 69 (196)
T PF13604_consen 7 REAVRAILTS---GDRVSVLQGPAGTGKTTLLKALAEALEAAG-KRVIGL-----APT----NKAAKELREKTG----IE 69 (196)
T ss_dssp HHHHHHHHHC---TCSEEEEEESTTSTHHHHHHHHHHHHHHTT---EEEE-----ESS----HHHHHHHHHHHT----S-
T ss_pred HHHHHHHHhc---CCeEEEEEECCCCCHHHHHHHHHHHHHhCC-CeEEEE-----CCc----HHHHHHHHHhhC----cc
Confidence 3444444452 337888999999999999999888776653 233332 111 122222222211 11
Q ss_pred ccchhhhHHHHHhhh------CCceEEEEEeCCC--ChhhhhhhhCCCCCCCCCceEEEEeC
Q 045677 98 IRNVYDGVNMIGSRL------RHKKVLLLIDDVA--DVEQLRGLFGKRDWFGLGSMIIITTR 151 (352)
Q Consensus 98 ~~~~~~~~~~~~~~l------~~~~~llvlDd~~--~~~~~~~l~~~~~~~~~~~~iiitsr 151 (352)
...+..+.......- .....+||+|++. +...+..++.... ..+.++|+..=
T Consensus 70 a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~--~~~~klilvGD 129 (196)
T PF13604_consen 70 AQTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAK--KSGAKLILVGD 129 (196)
T ss_dssp EEEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS---T-T-EEEEEE-
T ss_pred hhhHHHHHhcCCcccccccccCCcccEEEEecccccCHHHHHHHHHHHH--hcCCEEEEECC
Confidence 111111000000000 1234599999995 4455666666654 34678877664
No 210
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.67 E-value=0.00036 Score=56.90 Aligned_cols=35 Identities=20% Similarity=0.248 Sum_probs=26.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEe
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFL 66 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~ 66 (352)
+++++++||.|+||||.+.+++.....+.....++
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~li 35 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALI 35 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceee
Confidence 36899999999999999999998876553333333
No 211
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.67 E-value=4.3e-05 Score=57.23 Aligned_cols=23 Identities=39% Similarity=0.453 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 045677 34 TIGIWGMGGLGKTTLARVVYDLM 56 (352)
Q Consensus 34 ~v~I~G~~GiGKT~La~~~~~~~ 56 (352)
+|+|.|++|+||||+|+.+++.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999876
No 212
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.65 E-value=0.00023 Score=62.28 Aligned_cols=48 Identities=27% Similarity=0.253 Sum_probs=34.6
Q ss_pred HHHHHHh-cCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEee
Q 045677 20 KLKFLMC-TGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLA 67 (352)
Q Consensus 20 ~l~~~l~-~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~ 67 (352)
.|-..|. .+=+..+++.|+|++|+|||+|+.+++..........+|+.
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId 90 (325)
T cd00983 42 SLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFID 90 (325)
T ss_pred HHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEC
Confidence 3444444 33345689999999999999999999887665555566664
No 213
>PRK06696 uridine kinase; Validated
Probab=97.65 E-value=0.00012 Score=61.17 Aligned_cols=47 Identities=19% Similarity=0.198 Sum_probs=38.5
Q ss_pred cccHHHHHHHHHHhc-CCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCC
Q 045677 13 GMESRLEKLKFLMCT-GSNDVRTIGIWGMGGLGKTTLARVVYDLMSHE 59 (352)
Q Consensus 13 GR~~~l~~l~~~l~~-~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~ 59 (352)
.|...+++|.+.+.. ..++..+|.|.|++|+||||||..++..+...
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~ 49 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKKR 49 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 467778888888764 34567889999999999999999999988644
No 214
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=0.0051 Score=55.28 Aligned_cols=28 Identities=18% Similarity=0.369 Sum_probs=23.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcCC
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLMSHE 59 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~~~~ 59 (352)
.|-.+++||||+|||+++.+++..+.-+
T Consensus 235 KRGYLLYGPPGTGKSS~IaAmAn~L~yd 262 (457)
T KOG0743|consen 235 KRGYLLYGPPGTGKSSFIAAMANYLNYD 262 (457)
T ss_pred hccceeeCCCCCCHHHHHHHHHhhcCCc
Confidence 4668899999999999999999776543
No 215
>PTZ00494 tuzin-like protein; Provisional
Probab=97.64 E-value=0.0033 Score=56.52 Aligned_cols=168 Identities=13% Similarity=0.067 Sum_probs=95.4
Q ss_pred CCCCCcCcccccHHHHHHHHHHhcC-CCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHH
Q 045677 4 ELEIPKELVGMESRLEKLKFLMCTG-SNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISL 82 (352)
Q Consensus 4 ~~~~~~~~vGR~~~l~~l~~~l~~~-~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 82 (352)
.+..+..+|.|+.|-.-+.+.|... ...+++++++|..|.|||+|.+....+- .-..+|+ +++. .. +.
T Consensus 366 a~a~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE---~~paV~V-DVRg---~E----Dt 434 (664)
T PTZ00494 366 AAAAEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVE---GVALVHV-DVGG---TE----DT 434 (664)
T ss_pred cccccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHc---CCCeEEE-EecC---Cc----ch
Confidence 3556778999999988887777753 3457999999999999999988776542 2234444 3433 33 33
Q ss_pred HHHHHHHHhcccCCCccchhhhH-HHHH---hhhCCceEEEEEeCC--CChhh-hhhhhCCCCCCCCCceEEEEeCchhH
Q 045677 83 QKQLLSDLLMLADNSIRNVYDGV-NMIG---SRLRHKKVLLLIDDV--ADVEQ-LRGLFGKRDWFGLGSMIIITTRDEHL 155 (352)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~l~~~~~llvlDd~--~~~~~-~~~l~~~~~~~~~~~~iiitsr~~~~ 155 (352)
++.+.+.+.-+......+.-+++ +... ....++..+||+-=- .+..- +.+.... .-...-|+|++----+.+
T Consensus 435 LrsVVKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~vaL-acDrRlCHvv~EVplESL 513 (664)
T PTZ00494 435 LRSVVRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEVVSL-VSDCQACHIVLAVPMKAL 513 (664)
T ss_pred HHHHHHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHHHHH-HccchhheeeeechHhhh
Confidence 45555554443333333332222 2222 223455556665332 22211 1111111 101345677764433322
Q ss_pred hhh---cCcccEEecCCCCHhHHHHHHHhhh
Q 045677 156 LKL---HRVEEVYKLEALNFDEAFRLFCLKA 183 (352)
Q Consensus 156 ~~~---~~~~~~~~l~~l~~~e~~~ll~~~~ 183 (352)
... .+....|.+++|+.+++.++.+...
T Consensus 514 T~~n~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 514 TPLNVSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred chhhccCccceeEecCCcCHHHHHHHHhccc
Confidence 111 2345678999999999999887765
No 216
>CHL00206 ycf2 Ycf2; Provisional
Probab=97.64 E-value=0.0004 Score=72.46 Aligned_cols=30 Identities=20% Similarity=0.170 Sum_probs=24.8
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHhcCC
Q 045677 30 NDVRTIGIWGMGGLGKTTLARVVYDLMSHE 59 (352)
Q Consensus 30 ~~~~~v~I~G~~GiGKT~La~~~~~~~~~~ 59 (352)
..++-|+++||+|+|||.||+.++....-.
T Consensus 1628 ~pPKGILLiGPPGTGKTlLAKALA~es~VP 1657 (2281)
T CHL00206 1628 SPSRGILVIGSIGTGRSYLVKYLATNSYVP 1657 (2281)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHhcCCc
Confidence 345779999999999999999999875433
No 217
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.64 E-value=0.00021 Score=58.52 Aligned_cols=106 Identities=16% Similarity=0.192 Sum_probs=58.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHHhhh
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQKQLLSDLLMLADNSIRNVYDGVNMIGSRL 112 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 112 (352)
.+++|.|++|+||||++..++..+.......++...- +.... ..-...+ ...... ..+.......+...+
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~----~~E~~-~~~~~~~----i~q~~v-g~~~~~~~~~i~~aL 71 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIED----PIEFV-HESKRSL----INQREV-GLDTLSFENALKAAL 71 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcC----Ccccc-ccCccce----eeeccc-CCCccCHHHHHHHHh
Confidence 4789999999999999999888776543333333211 10000 0000000 000000 111233455666777
Q ss_pred CCceEEEEEeCCCChhhhhhhhCCCCCCCCCceEEEEeC
Q 045677 113 RHKKVLLLIDDVADVEQLRGLFGKRDWFGLGSMIIITTR 151 (352)
Q Consensus 113 ~~~~~llvlDd~~~~~~~~~l~~~~~~~~~~~~iiitsr 151 (352)
...+=++++|++.+.+.+...+.... .+..++.|+-
T Consensus 72 r~~pd~ii~gEird~e~~~~~l~~a~---~G~~v~~t~H 107 (198)
T cd01131 72 RQDPDVILVGEMRDLETIRLALTAAE---TGHLVMSTLH 107 (198)
T ss_pred cCCcCEEEEcCCCCHHHHHHHHHHHH---cCCEEEEEec
Confidence 77788999999987776655444322 2334555554
No 218
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=97.63 E-value=0.0017 Score=61.53 Aligned_cols=48 Identities=17% Similarity=0.052 Sum_probs=37.8
Q ss_pred cCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHh
Q 045677 9 KELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLM 56 (352)
Q Consensus 9 ~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~ 56 (352)
+.++|....++++.+.+..-......|+|+|++|+||+.+|+.+....
T Consensus 204 ~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~s 251 (520)
T PRK10820 204 SQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRS 251 (520)
T ss_pred cceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHhC
Confidence 468999999998888776423334568999999999999999965543
No 219
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.63 E-value=0.00046 Score=53.71 Aligned_cols=25 Identities=32% Similarity=0.512 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcC
Q 045677 34 TIGIWGMGGLGKTTLARVVYDLMSH 58 (352)
Q Consensus 34 ~v~I~G~~GiGKT~La~~~~~~~~~ 58 (352)
+++|+|.+|+||||+++.+...+..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~ 25 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQ 25 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999988753
No 220
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=97.62 E-value=0.00033 Score=59.59 Aligned_cols=42 Identities=33% Similarity=0.508 Sum_probs=33.2
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeecccc
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRER 72 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~ 72 (352)
..+-+.|.|.+|+|||+|+.+++...+.+|...+++..++..
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~iGer 109 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGER 109 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccC
Confidence 346788999999999999999999987776666666654443
No 221
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.00066 Score=64.06 Aligned_cols=152 Identities=17% Similarity=0.189 Sum_probs=83.5
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHH
Q 045677 30 NDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQKQLLSDLLMLADNSIRNVYDGVNMIG 109 (352)
Q Consensus 30 ~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (352)
...+.++++||+|+|||.||+.++......|-....- .+...+.+. ........+.
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~------------------~l~sk~vGe------sek~ir~~F~ 329 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS------------------ELLSKWVGE------SEKNIRELFE 329 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH------------------HHhccccch------HHHHHHHHHH
Confidence 3456799999999999999999998665543211111 111111111 1111222333
Q ss_pred hhhCCceEEEEEeCCCCh-------------hhhhhhhCCCCCC--CCCceEEEEeCchh-Hhh----hcCcccEEecCC
Q 045677 110 SRLRHKKVLLLIDDVADV-------------EQLRGLFGKRDWF--GLGSMIIITTRDEH-LLK----LHRVEEVYKLEA 169 (352)
Q Consensus 110 ~~l~~~~~llvlDd~~~~-------------~~~~~l~~~~~~~--~~~~~iiitsr~~~-~~~----~~~~~~~~~l~~ 169 (352)
......+++|+||+++.. ..+..++..+... ..+..+|-+|.... +.+ ..++...+.+++
T Consensus 330 ~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~ 409 (494)
T COG0464 330 KARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPL 409 (494)
T ss_pred HHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCC
Confidence 444578999999999432 1233344333211 23333444443222 211 125667889999
Q ss_pred CCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCC
Q 045677 170 LNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASG 206 (352)
Q Consensus 170 l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G 206 (352)
-+.++..+.|.........+ -...-..+.+.+.+.|
T Consensus 410 pd~~~r~~i~~~~~~~~~~~-~~~~~~~~~l~~~t~~ 445 (494)
T COG0464 410 PDLEERLEIFKIHLRDKKPP-LAEDVDLEELAEITEG 445 (494)
T ss_pred CCHHHHHHHHHHHhcccCCc-chhhhhHHHHHHHhcC
Confidence 99999999998877432222 1122345556666666
No 222
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.61 E-value=0.00021 Score=56.74 Aligned_cols=22 Identities=23% Similarity=0.146 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 045677 34 TIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 34 ~v~I~G~~GiGKT~La~~~~~~ 55 (352)
+++|.|++|+|||++|.+++..
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~ 22 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAE 22 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHh
Confidence 3689999999999999999876
No 223
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.61 E-value=0.00028 Score=61.69 Aligned_cols=48 Identities=27% Similarity=0.287 Sum_probs=34.7
Q ss_pred HHHHHHh-cCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEee
Q 045677 20 KLKFLMC-TGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLA 67 (352)
Q Consensus 20 ~l~~~l~-~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~ 67 (352)
.|-..|. .+=...+++.|+|++|+|||+|+.+++..........+|+.
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId 90 (321)
T TIGR02012 42 SLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 90 (321)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEc
Confidence 3444454 33345689999999999999999998887665555556664
No 224
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=97.60 E-value=5.1e-05 Score=58.84 Aligned_cols=35 Identities=31% Similarity=0.214 Sum_probs=28.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEe
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFL 66 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~ 66 (352)
..+|+|+|.+|+||||||..+.+.+........++
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~L 36 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLL 36 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEe
Confidence 36899999999999999999999987776555554
No 225
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=97.59 E-value=0.00059 Score=66.11 Aligned_cols=154 Identities=15% Similarity=0.168 Sum_probs=79.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHHhhh
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQKQLLSDLLMLADNSIRNVYDGVNMIGSRL 112 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 112 (352)
+-++|+|++|+|||++++.++......| +..... ++. ...... ........+....
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~~f----~~is~~----------~~~----~~~~g~------~~~~~~~~f~~a~ 241 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKVPF----FTISGS----------DFV----EMFVGV------GASRVRDMFEQAK 241 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCCE----EEEehH----------HhH----Hhhhcc------cHHHHHHHHHHHH
Confidence 4599999999999999999988765432 111110 110 000000 0111222233333
Q ss_pred CCceEEEEEeCCCChh----------------hhhhhhCCCCCC--CCCceEEEEeCchhH-----hhhcCcccEEecCC
Q 045677 113 RHKKVLLLIDDVADVE----------------QLRGLFGKRDWF--GLGSMIIITTRDEHL-----LKLHRVEEVYKLEA 169 (352)
Q Consensus 113 ~~~~~llvlDd~~~~~----------------~~~~l~~~~~~~--~~~~~iiitsr~~~~-----~~~~~~~~~~~l~~ 169 (352)
...+.+|+||+++... .+..++..+... ..+..+|.||..... ....++...+.++.
T Consensus 242 ~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~ 321 (644)
T PRK10733 242 KAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGL 321 (644)
T ss_pred hcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCC
Confidence 4578999999995431 123333333211 223344445544322 11124567788888
Q ss_pred CCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCC-CchhHHH
Q 045677 170 LNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASG-LPLAVDV 213 (352)
Q Consensus 170 l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G-~Pl~i~~ 213 (352)
-+.++-.+++............ -....+++.+.| .+.-|..
T Consensus 322 Pd~~~R~~Il~~~~~~~~l~~~---~d~~~la~~t~G~sgadl~~ 363 (644)
T PRK10733 322 PDVRGREQILKVHMRRVPLAPD---IDAAIIARGTPGFSGADLAN 363 (644)
T ss_pred CCHHHHHHHHHHHhhcCCCCCc---CCHHHHHhhCCCCCHHHHHH
Confidence 8888888888776533221111 113446666665 3333433
No 226
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.56 E-value=0.00046 Score=58.28 Aligned_cols=36 Identities=28% Similarity=0.269 Sum_probs=27.0
Q ss_pred HHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHh
Q 045677 21 LKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLM 56 (352)
Q Consensus 21 l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~ 56 (352)
|-..|..+=....++.|+|++|+|||+|+.+++...
T Consensus 8 lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~ 43 (235)
T cd01123 8 LDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTV 43 (235)
T ss_pred hHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHe
Confidence 334444333456889999999999999999998664
No 227
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.56 E-value=0.00012 Score=67.93 Aligned_cols=50 Identities=26% Similarity=0.325 Sum_probs=42.6
Q ss_pred CcccccHHHHHHHHHHh----cCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCC
Q 045677 10 ELVGMESRLEKLKFLMC----TGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHE 59 (352)
Q Consensus 10 ~~vGR~~~l~~l~~~l~----~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~ 59 (352)
+++|-+..++.+.+.|. ..+...++++++||+|+|||+|+..++..+.+.
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~ 130 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMERV 130 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHhC
Confidence 58999999999999883 234566899999999999999999999877655
No 228
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.56 E-value=9.6e-05 Score=56.55 Aligned_cols=34 Identities=29% Similarity=0.423 Sum_probs=27.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcCC-CcceeEe
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLMSHE-FDGSSFL 66 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~~~~-~~~~~~~ 66 (352)
--++|+|++|+||||++..++..++.. |..+-|+
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~ 40 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFI 40 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEE
Confidence 458899999999999999999988776 5444333
No 229
>PRK09354 recA recombinase A; Provisional
Probab=97.55 E-value=0.00044 Score=61.02 Aligned_cols=96 Identities=21% Similarity=0.245 Sum_probs=55.0
Q ss_pred HHHHHHh-cCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHHHH---HHHHhcccC
Q 045677 20 KLKFLMC-TGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQKQL---LSDLLMLAD 95 (352)
Q Consensus 20 ~l~~~l~-~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~ 95 (352)
.|-..|. .+=...+++.|+|++|+|||+|+.+++..........+|+..-.... ......+ +..+..
T Consensus 47 ~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~------~~~a~~lGvdld~lli--- 117 (349)
T PRK09354 47 ALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALD------PVYAKKLGVDIDNLLV--- 117 (349)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchH------HHHHHHcCCCHHHeEE---
Confidence 4444455 33345689999999999999999999887766655666664221111 1111111 111111
Q ss_pred CCccchhhhHHHHHhhhC-CceEEEEEeCC
Q 045677 96 NSIRNVYDGVNMIGSRLR-HKKVLLLIDDV 124 (352)
Q Consensus 96 ~~~~~~~~~~~~~~~~l~-~~~~llvlDd~ 124 (352)
..+...++....+..... +..-+||+|.+
T Consensus 118 ~qp~~~Eq~l~i~~~li~s~~~~lIVIDSv 147 (349)
T PRK09354 118 SQPDTGEQALEIADTLVRSGAVDLIVVDSV 147 (349)
T ss_pred ecCCCHHHHHHHHHHHhhcCCCCEEEEeCh
Confidence 112334455555554443 45668999998
No 230
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.54 E-value=0.00046 Score=55.43 Aligned_cols=36 Identities=31% Similarity=0.551 Sum_probs=29.6
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEe
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFL 66 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~ 66 (352)
.+.++++.|++|+||||+++.++..+...+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEE
Confidence 346899999999999999999999987665555555
No 231
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.54 E-value=0.00018 Score=67.69 Aligned_cols=28 Identities=36% Similarity=0.433 Sum_probs=24.2
Q ss_pred CCCeEEEEEEcCCCCcHHHHHHHHHHHh
Q 045677 29 SNDVRTIGIWGMGGLGKTTLARVVYDLM 56 (352)
Q Consensus 29 ~~~~~~v~I~G~~GiGKT~La~~~~~~~ 56 (352)
.+..++.+++|++|.||||||..++++.
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkqa 350 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQA 350 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHhc
Confidence 3557899999999999999999998653
No 232
>PRK06762 hypothetical protein; Provisional
Probab=97.53 E-value=0.0011 Score=52.76 Aligned_cols=25 Identities=36% Similarity=0.458 Sum_probs=22.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHh
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLM 56 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~ 56 (352)
+.+++|+|++|+||||+|+.+...+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999877
No 233
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.53 E-value=0.0062 Score=51.18 Aligned_cols=208 Identities=13% Similarity=0.131 Sum_probs=107.5
Q ss_pred CcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcC------CCcceeEeeeccc------cccCCC
Q 045677 10 ELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSH------EFDGSSFLADVRE------RCDKEG 77 (352)
Q Consensus 10 ~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~------~~~~~~~~~~~~~------~~~~~~ 77 (352)
.+.+++..-..|..... .++.+-..++||+|.||-|.+..+.+++-. +.....|...... .++...
T Consensus 14 ~l~~~~e~~~~Lksl~~--~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yH 91 (351)
T KOG2035|consen 14 ELIYHEELANLLKSLSS--TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYH 91 (351)
T ss_pred hcccHHHHHHHHHHhcc--cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccce
Confidence 35666666666666555 455688899999999999988777775421 1112222221110 000000
Q ss_pred c----------HHHHHHHHHHHHhcccCCCccchhhhHHHHHhhhCCceE-EEEEeCCCCh--hhhhhhhCCCCCCCCCc
Q 045677 78 S----------VISLQKQLLSDLLMLADNSIRNVYDGVNMIGSRLRHKKV-LLLIDDVADV--EQLRGLFGKRDWFGLGS 144 (352)
Q Consensus 78 ~----------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-llvlDd~~~~--~~~~~l~~~~~~~~~~~ 144 (352)
. -.-+..+++......... +....+++ ++||-.+++. +.-..+.+....-...+
T Consensus 92 lEitPSDaG~~DRvViQellKevAQt~qi-------------e~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~ 158 (351)
T KOG2035|consen 92 LEITPSDAGNYDRVVIQELLKEVAQTQQI-------------ETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNC 158 (351)
T ss_pred EEeChhhcCcccHHHHHHHHHHHHhhcch-------------hhccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCc
Confidence 0 011222222221111100 01112333 6666666532 22333333332224577
Q ss_pred eEEEEeCc--hhHhhhcCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchhHHHHHHhhcC--
Q 045677 145 MIIITTRD--EHLLKLHRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLAVDVLVSFLFG-- 220 (352)
Q Consensus 145 ~iiitsr~--~~~~~~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~~l~~-- 220 (352)
++|+.-.+ .-+.+.-...-.++++..+.+|....+...........+ .+.+.+|+++++||-.---++....+-
T Consensus 159 RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp--~~~l~rIa~kS~~nLRrAllmlE~~~~~n 236 (351)
T KOG2035|consen 159 RLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP--KELLKRIAEKSNRNLRRALLMLEAVRVNN 236 (351)
T ss_pred eEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc--HHHHHHHHHHhcccHHHHHHHHHHHHhcc
Confidence 87763221 112222234557899999999999998877633332222 488999999999986543333333221
Q ss_pred ---------CChhHHHHHHHHHc
Q 045677 221 ---------RPVDQWRSTQERLK 234 (352)
Q Consensus 221 ---------~~~~~~~~~~~~~~ 234 (352)
-+..+|+.+.....
T Consensus 237 ~~~~a~~~~i~~~dWe~~i~e~a 259 (351)
T KOG2035|consen 237 EPFTANSQVIPKPDWEIYIQEIA 259 (351)
T ss_pred ccccccCCCCCCccHHHHHHHHH
Confidence 13567887776653
No 234
>PRK07667 uridine kinase; Provisional
Probab=97.52 E-value=0.00027 Score=57.69 Aligned_cols=42 Identities=26% Similarity=0.300 Sum_probs=33.4
Q ss_pred HHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCC
Q 045677 18 LEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHE 59 (352)
Q Consensus 18 l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~ 59 (352)
++.+.+.+....+...+|.|.|++|+||||++..+...+...
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~~ 44 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQE 44 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 455666666555566889999999999999999999987654
No 235
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.50 E-value=0.0006 Score=61.22 Aligned_cols=48 Identities=23% Similarity=0.198 Sum_probs=33.5
Q ss_pred HHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEee
Q 045677 20 KLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLA 67 (352)
Q Consensus 20 ~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~ 67 (352)
.|.+.|..+-....+++|.|++|+|||+|+.+++...........|+.
T Consensus 70 eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs 117 (372)
T cd01121 70 ELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVS 117 (372)
T ss_pred HHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 344444432234578999999999999999999988765544445553
No 236
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=97.50 E-value=0.001 Score=54.29 Aligned_cols=30 Identities=40% Similarity=0.516 Sum_probs=26.4
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHhcCC
Q 045677 30 NDVRTIGIWGMGGLGKTTLARVVYDLMSHE 59 (352)
Q Consensus 30 ~~~~~v~I~G~~GiGKT~La~~~~~~~~~~ 59 (352)
.++.+|.|.|.+|+||||+++.+...++..
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 345789999999999999999999988755
No 237
>PRK04328 hypothetical protein; Provisional
Probab=97.50 E-value=0.00048 Score=58.61 Aligned_cols=48 Identities=13% Similarity=0.114 Sum_probs=33.7
Q ss_pred HHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEee
Q 045677 20 KLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLA 67 (352)
Q Consensus 20 ~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~ 67 (352)
.|-+.|..+=....+++|.|++|+|||+|+.+++..........+|+.
T Consensus 11 ~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis 58 (249)
T PRK04328 11 GMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA 58 (249)
T ss_pred hHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 344445533335688999999999999999998877444445555554
No 238
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=97.48 E-value=0.00015 Score=62.08 Aligned_cols=34 Identities=21% Similarity=0.195 Sum_probs=23.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEe
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFL 66 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~ 66 (352)
++|+|+|.||+||||+|.++...+........++
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i 35 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVII 35 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 5789999999999999999999876643333333
No 239
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=0.0011 Score=54.61 Aligned_cols=30 Identities=30% Similarity=0.438 Sum_probs=25.4
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHhcCC
Q 045677 30 NDVRTIGIWGMGGLGKTTLARVVYDLMSHE 59 (352)
Q Consensus 30 ~~~~~v~I~G~~GiGKT~La~~~~~~~~~~ 59 (352)
+.++-|+++||+|+|||-|++.+++.....
T Consensus 187 dpprgvllygppg~gktml~kava~~t~a~ 216 (408)
T KOG0727|consen 187 DPPRGVLLYGPPGTGKTMLAKAVANHTTAA 216 (408)
T ss_pred CCCcceEEeCCCCCcHHHHHHHHhhccchh
Confidence 456889999999999999999999765544
No 240
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.45 E-value=0.0017 Score=59.52 Aligned_cols=29 Identities=31% Similarity=0.377 Sum_probs=25.4
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcCC
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMSHE 59 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~~~ 59 (352)
.+.+++++|++|+||||++..++..+...
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~ 122 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKK 122 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 46789999999999999999999887655
No 241
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.45 E-value=0.00064 Score=60.72 Aligned_cols=95 Identities=18% Similarity=0.207 Sum_probs=55.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHHhh
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQKQLLSDLLMLADNSIRNVYDGVNMIGSR 111 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (352)
...++|.|++|+||||+++.+...+.......++... ++... ..... ......... ..........+...
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiE-----dp~E~---~~~~~-~~~i~q~ev-g~~~~~~~~~l~~~ 191 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIE-----DPIEY---VHRNK-RSLINQREV-GLDTLSFANALRAA 191 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEc-----CChhh---hccCc-cceEEcccc-CCCCcCHHHHHHHh
Confidence 3789999999999999999988877654444444321 01000 00000 000000000 11123455667777
Q ss_pred hCCceEEEEEeCCCChhhhhhhhCC
Q 045677 112 LRHKKVLLLIDDVADVEQLRGLFGK 136 (352)
Q Consensus 112 l~~~~~llvlDd~~~~~~~~~l~~~ 136 (352)
+...+=+|++|++.+.+.....+..
T Consensus 192 lr~~pd~i~vgEird~~~~~~~l~a 216 (343)
T TIGR01420 192 LREDPDVILIGEMRDLETVELALTA 216 (343)
T ss_pred hccCCCEEEEeCCCCHHHHHHHHHH
Confidence 8889999999999877766554443
No 242
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=0.0023 Score=60.18 Aligned_cols=174 Identities=19% Similarity=0.240 Sum_probs=92.8
Q ss_pred CcccccHHHHHH---HHHHhcCC-------CCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcH
Q 045677 10 ELVGMESRLEKL---KFLMCTGS-------NDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSV 79 (352)
Q Consensus 10 ~~vGR~~~l~~l---~~~l~~~~-------~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (352)
+..|.+...+++ .+.|.... .-++-|.++||+|+|||.||+.++-+..-.| |.. +.
T Consensus 151 DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPF----f~i-----SG----- 216 (596)
T COG0465 151 DVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPF----FSI-----SG----- 216 (596)
T ss_pred hhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCc----eec-----cc-----
Confidence 446766655555 44555322 2356799999999999999999986644332 111 00
Q ss_pred HHHHHHHHHHHhcccCCCccchhhhHHHHHhhhCCceEEEEEeCCCCh----------------hhhhhhhCCCCCCCC-
Q 045677 80 ISLQKQLLSDLLMLADNSIRNVYDGVNMIGSRLRHKKVLLLIDDVADV----------------EQLRGLFGKRDWFGL- 142 (352)
Q Consensus 80 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~----------------~~~~~l~~~~~~~~~- 142 (352)
. ++...+.+... ...-+.+.+..++.|++++||.++.. +.+..++....-+..
T Consensus 217 S----~FVemfVGvGA------sRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~ 286 (596)
T COG0465 217 S----DFVEMFVGVGA------SRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGN 286 (596)
T ss_pred h----hhhhhhcCCCc------HHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCC
Confidence 0 11111111111 11123344555677899999998531 234455544443332
Q ss_pred CceEEE--EeCchh----HhhhcCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchh
Q 045677 143 GSMIII--TTRDEH----LLKLHRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLA 210 (352)
Q Consensus 143 ~~~iii--tsr~~~----~~~~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~ 210 (352)
...||+ |.|.+- +....++...+.++.-+...-.++++.+......... -....|++.+-|+-.+
T Consensus 287 ~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~---Vdl~~iAr~tpGfsGA 357 (596)
T COG0465 287 EGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAED---VDLKKIARGTPGFSGA 357 (596)
T ss_pred CceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCc---CCHHHHhhhCCCcccc
Confidence 223444 455432 2333456677878777777777777755433222211 1133377777776544
No 243
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.42 E-value=0.00033 Score=62.62 Aligned_cols=101 Identities=23% Similarity=0.350 Sum_probs=55.9
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHHh
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQKQLLSDLLMLADNSIRNVYDGVNMIGS 110 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (352)
.++-+.|||+.|.|||-|+-.++..+.......+-+ ...+..+-..+.... .. ...+..+.+
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HF-------------h~Fm~~vh~~l~~~~-~~----~~~l~~va~ 122 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHF-------------HEFMLDVHSRLHQLR-GQ----DDPLPQVAD 122 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCccccccccc-------------cHHHHHHHHHHHHHh-CC----CccHHHHHH
Confidence 467799999999999999999998864421111111 122222222222111 11 112334455
Q ss_pred hhCCceEEEEEeCC--CChhh---hhhhhCCCCCCCCCceEEEEeC
Q 045677 111 RLRHKKVLLLIDDV--ADVEQ---LRGLFGKRDWFGLGSMIIITTR 151 (352)
Q Consensus 111 ~l~~~~~llvlDd~--~~~~~---~~~l~~~~~~~~~~~~iiitsr 151 (352)
.+.++..||+||++ .+..+ +..++..+. ..|..+|.||.
T Consensus 123 ~l~~~~~lLcfDEF~V~DiaDAmil~rLf~~l~--~~gvvlVaTSN 166 (362)
T PF03969_consen 123 ELAKESRLLCFDEFQVTDIADAMILKRLFEALF--KRGVVLVATSN 166 (362)
T ss_pred HHHhcCCEEEEeeeeccchhHHHHHHHHHHHHH--HCCCEEEecCC
Confidence 55667779999998 34443 444444443 34555555554
No 244
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.42 E-value=8.6e-05 Score=54.23 Aligned_cols=25 Identities=36% Similarity=0.519 Sum_probs=21.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhcCC
Q 045677 35 IGIWGMGGLGKTTLARVVYDLMSHE 59 (352)
Q Consensus 35 v~I~G~~GiGKT~La~~~~~~~~~~ 59 (352)
|.|+|++|+|||+|+..++..+.++
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~ 25 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKH 25 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHH
Confidence 5799999999999999999886554
No 245
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.42 E-value=0.0012 Score=53.06 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHh
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLM 56 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~ 56 (352)
..++.|.|+.|+|||||++.++-..
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC
Confidence 4678999999999999999987654
No 246
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=97.41 E-value=0.0043 Score=58.23 Aligned_cols=49 Identities=16% Similarity=0.222 Sum_probs=39.6
Q ss_pred cCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 9 KELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 9 ~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
..++|+...++.+.+.+.........|+|+|++|+|||++|+.+.....
T Consensus 138 ~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~s~ 186 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSP 186 (469)
T ss_pred ccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhcCC
Confidence 4689999999988887765444456799999999999999988877643
No 247
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.39 E-value=0.00046 Score=53.28 Aligned_cols=24 Identities=33% Similarity=0.405 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 34 TIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 34 ~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
+|++.|++|+||||+++.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 578999999999999999987655
No 248
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.39 E-value=0.00062 Score=62.92 Aligned_cols=50 Identities=20% Similarity=0.186 Sum_probs=34.7
Q ss_pred HHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEee
Q 045677 18 LEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLA 67 (352)
Q Consensus 18 l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~ 67 (352)
+..|-+.|..+=....++.|.|++|+|||+|+.+++..........+|+.
T Consensus 66 i~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs 115 (446)
T PRK11823 66 IGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVS 115 (446)
T ss_pred cHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 34455555533234579999999999999999999988754434445554
No 249
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.38 E-value=0.013 Score=51.03 Aligned_cols=143 Identities=12% Similarity=0.106 Sum_probs=84.1
Q ss_pred HHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHh-cCC--------Cc-ceeEeeeccccccCCCcHHHHHHHHH
Q 045677 18 LEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLM-SHE--------FD-GSSFLADVRERCDKEGSVISLQKQLL 87 (352)
Q Consensus 18 l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~-~~~--------~~-~~~~~~~~~~~~~~~~~~~~l~~~~~ 87 (352)
++.+.+.+.. +.-.+..+++|+.|+||++++..+++.+ +.+ .+ ...++ +.. ..... .+-.+++.
T Consensus 5 ~~~l~~~i~~-~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~-d~~---g~~i~-vd~Ir~l~ 78 (299)
T PRK07132 5 IKFLDNSATQ-NKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILF-DIF---DKDLS-KSEFLSAI 78 (299)
T ss_pred HHHHHHHHHh-CCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEe-ccC---CCcCC-HHHHHHHH
Confidence 4455555653 2345888899999999999999999886 211 11 11111 100 00000 01111121
Q ss_pred HHHhcccCCCccchhhhHHHHHhhhCCceEEEEEeCCCCh--hhhhhhhCCCCCCCCCceEEEEeCc-hhHhhh-cCccc
Q 045677 88 SDLLMLADNSIRNVYDGVNMIGSRLRHKKVLLLIDDVADV--EQLRGLFGKRDWFGLGSMIIITTRD-EHLLKL-HRVEE 163 (352)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~iiitsr~-~~~~~~-~~~~~ 163 (352)
..+.-.+ .-.+.+=++|+|+++.. .....++..+.+.+..+.+|++|.+ ..+.+. ...+.
T Consensus 79 ~~~~~~~----------------~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~ 142 (299)
T PRK07132 79 NKLYFSS----------------FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQ 142 (299)
T ss_pred HHhccCC----------------cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeE
Confidence 1111000 00146668999999644 4567788888777788887775543 344433 35577
Q ss_pred EEecCCCCHhHHHHHHHhh
Q 045677 164 VYKLEALNFDEAFRLFCLK 182 (352)
Q Consensus 164 ~~~l~~l~~~e~~~ll~~~ 182 (352)
.+++.+++.++..+.+.+.
T Consensus 143 ~~~f~~l~~~~l~~~l~~~ 161 (299)
T PRK07132 143 VFNVKEPDQQKILAKLLSK 161 (299)
T ss_pred EEECCCCCHHHHHHHHHHc
Confidence 8999999999999887764
No 250
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.0013 Score=58.23 Aligned_cols=48 Identities=25% Similarity=0.223 Sum_probs=34.6
Q ss_pred HHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEee
Q 045677 19 EKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLA 67 (352)
Q Consensus 19 ~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~ 67 (352)
.++.+.|..+-=+..+++|-|.||+|||||+.+++.++.... ...|++
T Consensus 80 ~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVs 127 (456)
T COG1066 80 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVS 127 (456)
T ss_pred HHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEe
Confidence 444454553222457899999999999999999999987766 444443
No 251
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.0079 Score=57.50 Aligned_cols=69 Identities=25% Similarity=0.353 Sum_probs=43.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHHhhhC
Q 045677 34 TIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQKQLLSDLLMLADNSIRNVYDGVNMIGSRLR 113 (352)
Q Consensus 34 ~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 113 (352)
-|++|||+|+|||-+|+.++-+..-.| ++ + .+. ++++...+++. +..-+.+.+.-.
T Consensus 707 GILLYGPPGTGKTLlAKAVATEcsL~F-----lS-V------KGP------ELLNMYVGqSE------~NVR~VFerAR~ 762 (953)
T KOG0736|consen 707 GILLYGPPGTGKTLLAKAVATECSLNF-----LS-V------KGP------ELLNMYVGQSE------ENVREVFERARS 762 (953)
T ss_pred eeEEECCCCCchHHHHHHHHhhceeeE-----Ee-e------cCH------HHHHHHhcchH------HHHHHHHHHhhc
Confidence 488999999999999999997654332 22 1 111 44444444332 222233444445
Q ss_pred CceEEEEEeCCCC
Q 045677 114 HKKVLLLIDDVAD 126 (352)
Q Consensus 114 ~~~~llvlDd~~~ 126 (352)
..|++|.||++++
T Consensus 763 A~PCVIFFDELDS 775 (953)
T KOG0736|consen 763 AAPCVIFFDELDS 775 (953)
T ss_pred cCCeEEEeccccc
Confidence 6899999999965
No 252
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=97.37 E-value=0.0013 Score=51.98 Aligned_cols=119 Identities=13% Similarity=-0.043 Sum_probs=58.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHHHHHHHH---hcccC---CCc----cchh
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQKQLLSDL---LMLAD---NSI----RNVY 102 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~---~~~----~~~~ 102 (352)
..+.|++..|.||||.|..++.+...+...+..+.-+... ...+. ...+..+.-.+ ..... .+. ....
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~-~~~GE-~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~ 83 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGA-WPNGE-RAAFEPHGVEFQVMGTGFTWETQNREADTAIAK 83 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCC-cccCh-HHHHHhcCcEEEECCCCCeecCCCcHHHHHHHH
Confidence 5788899999999999988887754443333222211111 01111 22222220000 00000 000 1122
Q ss_pred hhHHHHHhhhC-CceEEEEEeCCC-----ChhhhhhhhCCCCCCCCCceEEEEeCch
Q 045677 103 DGVNMIGSRLR-HKKVLLLIDDVA-----DVEQLRGLFGKRDWFGLGSMIIITTRDE 153 (352)
Q Consensus 103 ~~~~~~~~~l~-~~~~llvlDd~~-----~~~~~~~l~~~~~~~~~~~~iiitsr~~ 153 (352)
......++.+. +.-=++|||++- ..-+.+++...+...+.+..+|+|.|+.
T Consensus 84 ~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 84 AAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 22333334443 445599999982 2222233333333346778999999975
No 253
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.37 E-value=0.0013 Score=52.17 Aligned_cols=117 Identities=20% Similarity=0.175 Sum_probs=57.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeee---ccccccCCCcH-HHHHHHHHHHHhcccCCCccchhhhHHH
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLAD---VRERCDKEGSV-ISLQKQLLSDLLMLADNSIRNVYDGVNM 107 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (352)
..++.|.|+.|+|||||++.++-..... ...+++.. .....+..... ..+.+.+.. .........+...-.
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~----~~~~~LS~G~~~rv~ 101 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPWG-SGRIGMPEGEDLLFLPQRPYLPLGTLREQLIY----PWDDVLSGGEQQRLA 101 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCC-CceEEECCCceEEEECCCCccccccHHHHhhc----cCCCCCCHHHHHHHH
Confidence 4689999999999999999988654322 22222211 11111111110 122222211 011222223333334
Q ss_pred HHhhhCCceEEEEEeCCC---ChhhhhhhhCCCCCCCCCceEEEEeCchhH
Q 045677 108 IGSRLRHKKVLLLIDDVA---DVEQLRGLFGKRDWFGLGSMIIITTRDEHL 155 (352)
Q Consensus 108 ~~~~l~~~~~llvlDd~~---~~~~~~~l~~~~~~~~~~~~iiitsr~~~~ 155 (352)
+...+..++-++++|+-. +......+...+... +..+|++|.+...
T Consensus 102 laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~ 150 (166)
T cd03223 102 FARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSL 150 (166)
T ss_pred HHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhH
Confidence 445556778899999973 333333332222211 3456677666543
No 254
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=97.35 E-value=0.0069 Score=59.12 Aligned_cols=49 Identities=14% Similarity=0.217 Sum_probs=39.4
Q ss_pred cCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 9 KELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 9 ~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
+.++|....++++.+....-......|+|+|++|+||+++|+.+.+...
T Consensus 325 ~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s~ 373 (638)
T PRK11388 325 DHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESE 373 (638)
T ss_pred cceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhCC
Confidence 4689999999988887775333345689999999999999999887644
No 255
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=97.35 E-value=0.00035 Score=61.22 Aligned_cols=58 Identities=29% Similarity=0.270 Sum_probs=40.6
Q ss_pred CCCCCcCcccccHHHHHH---HHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCc
Q 045677 4 ELEIPKELVGMESRLEKL---KFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFD 61 (352)
Q Consensus 4 ~~~~~~~~vGR~~~l~~l---~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~ 61 (352)
+......+||.....+.. .+++..+.=..+.+++.||+|+|||+||..+++.+..+.+
T Consensus 19 ~~~~~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~P 79 (398)
T PF06068_consen 19 ARYIADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVP 79 (398)
T ss_dssp B-SEETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-
T ss_pred EeeccccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCC
Confidence 334567899999888754 4555544334589999999999999999999999987754
No 256
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.34 E-value=0.0039 Score=55.71 Aligned_cols=29 Identities=31% Similarity=0.357 Sum_probs=24.9
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcCC
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMSHE 59 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~~~ 59 (352)
.++.++|+|++|+||||++..++..+...
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~ 268 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGK 268 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 34789999999999999999999877544
No 257
>PRK08118 topology modulation protein; Reviewed
Probab=97.33 E-value=0.00021 Score=56.82 Aligned_cols=26 Identities=38% Similarity=0.510 Sum_probs=22.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcCC
Q 045677 34 TIGIWGMGGLGKTTLARVVYDLMSHE 59 (352)
Q Consensus 34 ~v~I~G~~GiGKT~La~~~~~~~~~~ 59 (352)
-|+|+|++|+||||||+.++..+.-.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~ 28 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIP 28 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 47899999999999999999886443
No 258
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.33 E-value=0.0004 Score=52.37 Aligned_cols=42 Identities=19% Similarity=0.149 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 16 SRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 16 ~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
.+.+++.+.+.+.-....++++.|+.|+|||||++.+++.+.
T Consensus 6 ~~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 6 KAMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 455566666654323447899999999999999999998864
No 259
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.33 E-value=0.0016 Score=52.48 Aligned_cols=122 Identities=20% Similarity=0.262 Sum_probs=58.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCC-CcHH---HHHHHHHHHHhcc-----cCCCccchh
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKE-GSVI---SLQKQLLSDLLML-----ADNSIRNVY 102 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~l~~~~~~~~~~~-----~~~~~~~~~ 102 (352)
..++.|.|+.|+|||||++.++-.... ....+++... +..... ..+. ..+.+++..+... ........+
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~~~-~~G~v~~~g~-~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~ 102 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLLKP-SSGEILLDGK-DLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGGE 102 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCE-ECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHHH
Confidence 468999999999999999998765432 2333444211 111100 0000 1111122222111 111112222
Q ss_pred hhHHHHHhhhCCceEEEEEeCCC---ChhhhhhhhCCCCCC-CC-CceEEEEeCchhH
Q 045677 103 DGVNMIGSRLRHKKVLLLIDDVA---DVEQLRGLFGKRDWF-GL-GSMIIITTRDEHL 155 (352)
Q Consensus 103 ~~~~~~~~~l~~~~~llvlDd~~---~~~~~~~l~~~~~~~-~~-~~~iiitsr~~~~ 155 (352)
...-.+...+...+-++++|+-. +....+.+...+... .. +..+|++|.+...
T Consensus 103 ~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~ 160 (180)
T cd03214 103 RQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNL 160 (180)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 33333445556688899999983 333333333332211 12 4567777765543
No 260
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.32 E-value=0.0017 Score=56.36 Aligned_cols=29 Identities=28% Similarity=0.257 Sum_probs=24.6
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcCC
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMSHE 59 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~~~ 59 (352)
..+++.|+|++|+||||++..++..+...
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~ 221 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLE 221 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 35689999999999999999999876543
No 261
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.32 E-value=0.002 Score=53.10 Aligned_cols=60 Identities=20% Similarity=0.228 Sum_probs=36.2
Q ss_pred cchhhhHHHHHhhhCCceEEEEEeCC----CC--hhhhhhhhCCCCCCCCCceEEEEeCchhHhhhc
Q 045677 99 RNVYDGVNMIGSRLRHKKVLLLIDDV----AD--VEQLRGLFGKRDWFGLGSMIIITTRDEHLLKLH 159 (352)
Q Consensus 99 ~~~~~~~~~~~~~l~~~~~llvlDd~----~~--~~~~~~l~~~~~~~~~~~~iiitsr~~~~~~~~ 159 (352)
...+++--.+.+.+...|-+|+-|+= +. ...+-.++..+.. ..+..||+.|-+..++...
T Consensus 144 SGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~-~~g~tii~VTHd~~lA~~~ 209 (226)
T COG1136 144 SGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNK-ERGKTIIMVTHDPELAKYA 209 (226)
T ss_pred CHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHH-hcCCEEEEEcCCHHHHHhC
Confidence 34455555666777788889999986 22 2223333333321 2366788888888776653
No 262
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=97.32 E-value=0.00052 Score=60.02 Aligned_cols=55 Identities=24% Similarity=0.256 Sum_probs=47.0
Q ss_pred CCCCcCcccccHHHHHHHHHHhc----CCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCC
Q 045677 5 LEIPKELVGMESRLEKLKFLMCT----GSNDVRTIGIWGMGGLGKTTLARVVYDLMSHE 59 (352)
Q Consensus 5 ~~~~~~~vGR~~~l~~l~~~l~~----~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~ 59 (352)
+...+.|+|-+..+.++.+.+.+ .+.+.+++.+.||.|.|||||+..+.+.+.+.
T Consensus 57 ~~f~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y 115 (358)
T PF08298_consen 57 PFFEDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEEY 115 (358)
T ss_pred CCccccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhheE
Confidence 44456899999999999999886 23457999999999999999999999888776
No 263
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.31 E-value=0.0014 Score=52.52 Aligned_cols=26 Identities=31% Similarity=0.392 Sum_probs=22.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcCC
Q 045677 34 TIGIWGMGGLGKTTLARVVYDLMSHE 59 (352)
Q Consensus 34 ~v~I~G~~GiGKT~La~~~~~~~~~~ 59 (352)
++.++|++|+||||++..++..+...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~ 27 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKK 27 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 46789999999999999999887655
No 264
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.30 E-value=0.0022 Score=51.24 Aligned_cols=27 Identities=30% Similarity=0.464 Sum_probs=22.7
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
...++.|.|+.|+|||||++.++-...
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~~ 53 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 347889999999999999999886543
No 265
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.0068 Score=50.13 Aligned_cols=148 Identities=16% Similarity=0.254 Sum_probs=80.1
Q ss_pred cccc-cHHHHHHHHHHhc-----------CCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCc
Q 045677 11 LVGM-ESRLEKLKFLMCT-----------GSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGS 78 (352)
Q Consensus 11 ~vGR-~~~l~~l~~~l~~-----------~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (352)
+||+ +..++++.+.+.- +=..++-++++||+|+|||-||+.+++... +|+..++.
T Consensus 148 MiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~------c~firvsg------- 214 (404)
T KOG0728|consen 148 MIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTD------CTFIRVSG------- 214 (404)
T ss_pred HhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcc------eEEEEech-------
Confidence 4443 5566666665442 113457789999999999999999986533 23322211
Q ss_pred HHHHHHHHHHHHhcccCCCccchhhhHHHHHhhhCCceEEEEEeCCCChh----------------hhhhhhCCCCC--C
Q 045677 79 VISLQKQLLSDLLMLADNSIRNVYDGVNMIGSRLRHKKVLLLIDDVADVE----------------QLRGLFGKRDW--F 140 (352)
Q Consensus 79 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~~----------------~~~~l~~~~~~--~ 140 (352)
..+....+ +... .-.-+.+.-.-.+.+-+|+.|++++.. .+-+++..+.- .
T Consensus 215 -selvqk~i----gegs------rmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfea 283 (404)
T KOG0728|consen 215 -SELVQKYI----GEGS------RMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEA 283 (404)
T ss_pred -HHHHHHHh----hhhH------HHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccccc
Confidence 22222221 1111 011111222234678899999985421 13344444432 2
Q ss_pred CCCceEEEEeCchh-----HhhhcCcccEEecCCCCHhHHHHHHHhh
Q 045677 141 GLGSMIIITTRDEH-----LLKLHRVEEVYKLEALNFDEAFRLFCLK 182 (352)
Q Consensus 141 ~~~~~iiitsr~~~-----~~~~~~~~~~~~l~~l~~~e~~~ll~~~ 182 (352)
..+.++|+.|..-. +....+....++.++-+.+.-.+++.-.
T Consensus 284 tknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkih 330 (404)
T KOG0728|consen 284 TKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIH 330 (404)
T ss_pred ccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHh
Confidence 45677777654322 2222345566788887777767766544
No 266
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.30 E-value=0.0019 Score=51.07 Aligned_cols=60 Identities=17% Similarity=0.123 Sum_probs=36.2
Q ss_pred hhhhHHHHHhhhCCceEEEEEeCC----CChhhhhhhhCCCCCCCCCceEEEEeCchhHhhhcC
Q 045677 101 VYDGVNMIGSRLRHKKVLLLIDDV----ADVEQLRGLFGKRDWFGLGSMIIITTRDEHLLKLHR 160 (352)
Q Consensus 101 ~~~~~~~~~~~l~~~~~llvlDd~----~~~~~~~~l~~~~~~~~~~~~iiitsr~~~~~~~~~ 160 (352)
.+++--.+.+..-++|-+++=|+- +...+|+-+.-.-..+..|..|+++|-+..+...++
T Consensus 141 GEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 141 GEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred hHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhcc
Confidence 344444455556678899999986 333334332211112256889999999887766543
No 267
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.30 E-value=0.0017 Score=55.70 Aligned_cols=116 Identities=16% Similarity=0.122 Sum_probs=61.5
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHHHHHHHHhcccCCC-------ccchh
Q 045677 30 NDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQKQLLSDLLMLADNS-------IRNVY 102 (352)
Q Consensus 30 ~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-------~~~~~ 102 (352)
.+...+.|.|++|+|||||++.++..+... ...+++. ....... +...++.......+... .+...
T Consensus 109 ~~~~~~~i~g~~g~GKttl~~~l~~~~~~~-~G~i~~~-g~~v~~~-----d~~~ei~~~~~~~~q~~~~~r~~v~~~~~ 181 (270)
T TIGR02858 109 NRVLNTLIISPPQCGKTTLLRDLARILSTG-ISQLGLR-GKKVGIV-----DERSEIAGCVNGVPQHDVGIRTDVLDGCP 181 (270)
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHhCccCCC-CceEEEC-CEEeecc-----hhHHHHHHHhcccccccccccccccccch
Confidence 345678999999999999999999776543 2233332 1111110 00112221111101000 11111
Q ss_pred hhHHHHHhhhCCceEEEEEeCCCChhhhhhhhCCCCCCCCCceEEEEeCchhH
Q 045677 103 DGVNMIGSRLRHKKVLLLIDDVADVEQLRGLFGKRDWFGLGSMIIITTRDEHL 155 (352)
Q Consensus 103 ~~~~~~~~~l~~~~~llvlDd~~~~~~~~~l~~~~~~~~~~~~iiitsr~~~~ 155 (352)
.............+-++++|+....+.+..+...+. .+..+|+|+-+..+
T Consensus 182 k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 182 KAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDV 231 (270)
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHH
Confidence 111222222235788999999977776666655542 46678888875443
No 268
>PRK14974 cell division protein FtsY; Provisional
Probab=97.29 E-value=0.0026 Score=56.25 Aligned_cols=29 Identities=24% Similarity=0.247 Sum_probs=25.0
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcCC
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMSHE 59 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~~~ 59 (352)
++.++.++|++|+||||++..++..+...
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~ 167 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN 167 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 35789999999999999999998877654
No 269
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=97.29 E-value=0.00062 Score=58.98 Aligned_cols=58 Identities=29% Similarity=0.259 Sum_probs=45.4
Q ss_pred CCCCCcCcccccHHHHH---HHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCc
Q 045677 4 ELEIPKELVGMESRLEK---LKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFD 61 (352)
Q Consensus 4 ~~~~~~~~vGR~~~l~~---l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~ 61 (352)
+-+..+.|||.....+. +.+...++.-..+.|++.||+|+|||+||..+++.+..+-+
T Consensus 34 ~k~~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvP 94 (450)
T COG1224 34 AKFIGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVP 94 (450)
T ss_pred EeEcCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCC
Confidence 44567889999887764 45555654445689999999999999999999999887643
No 270
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=97.29 E-value=0.015 Score=50.23 Aligned_cols=138 Identities=9% Similarity=0.057 Sum_probs=72.9
Q ss_pred HHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcC-CCcceeEeeeccccccCCCcHHHHHHHHHHHHhcccCCC
Q 045677 19 EKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSH-EFDGSSFLADVRERCDKEGSVISLQKQLLSDLLMLADNS 97 (352)
Q Consensus 19 ~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 97 (352)
++|...+..+ .-++..+++|+.|+||+++|..+++.+-. .....+... ....++ +. . .+.......
T Consensus 7 ~~L~~~i~~~-rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~--~~~~HP-D~-~--------~i~p~~~~~ 73 (290)
T PRK05917 7 EALIQRVRDQ-KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKI--SQKIHP-DI-H--------EFSPQGKGR 73 (290)
T ss_pred HHHHHHHHcC-CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHH--hcCCCC-CE-E--------EEecCCCCC
Confidence 4555655532 23578889999999999999999987522 111000000 000000 00 0 000000000
Q ss_pred ccchhhhHHHHHhhh-----CCceEEEEEeCCC--ChhhhhhhhCCCCCCCCCceEEEEeCc-hhHhhh-cCcccEEecC
Q 045677 98 IRNVYDGVNMIGSRL-----RHKKVLLLIDDVA--DVEQLRGLFGKRDWFGLGSMIIITTRD-EHLLKL-HRVEEVYKLE 168 (352)
Q Consensus 98 ~~~~~~~~~~~~~~l-----~~~~~llvlDd~~--~~~~~~~l~~~~~~~~~~~~iiitsr~-~~~~~~-~~~~~~~~l~ 168 (352)
.-.+++ +..+.+.+ .+..=++|||+++ +.+....++..+.+.+.++.+|++|.+ +.+.+. ...+..+.+.
T Consensus 74 ~I~idq-iR~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SRcq~~~~~ 152 (290)
T PRK05917 74 LHSIET-PRAIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRSLSIHIP 152 (290)
T ss_pred cCcHHH-HHHHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhcceEEEcc
Confidence 001111 12222222 2445589999997 456788888888877778877766665 444433 3445667777
Q ss_pred CC
Q 045677 169 AL 170 (352)
Q Consensus 169 ~l 170 (352)
++
T Consensus 153 ~~ 154 (290)
T PRK05917 153 ME 154 (290)
T ss_pred ch
Confidence 65
No 271
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.29 E-value=0.0008 Score=58.13 Aligned_cols=110 Identities=20% Similarity=0.180 Sum_probs=61.6
Q ss_pred CcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHHHHHHH
Q 045677 10 ELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQKQLLSD 89 (352)
Q Consensus 10 ~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 89 (352)
.+.-.....+.+.++|...-.....++|.|+.|+||||++..++..+.......+.+.+...... ..
T Consensus 105 ~l~~~~~~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l-------------~~ 171 (270)
T PF00437_consen 105 DLGESGSIPEEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRL-------------PG 171 (270)
T ss_dssp CCCHTHHCHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S---------------SC
T ss_pred hccCchhhHHHHHHHHhhccccceEEEEECCCccccchHHHHHhhhccccccceEEeccccceee-------------cc
Confidence 33333444455666555321234889999999999999999999877665222333321111100 00
Q ss_pred HhcccCCCc-cchhhhHHHHHhhhCCceEEEEEeCCCChhhhhhh
Q 045677 90 LLMLADNSI-RNVYDGVNMIGSRLRHKKVLLLIDDVADVEQLRGL 133 (352)
Q Consensus 90 ~~~~~~~~~-~~~~~~~~~~~~~l~~~~~llvlDd~~~~~~~~~l 133 (352)
........ .......+.+...+...+=.++++++.+.+....+
T Consensus 172 -~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR~~e~~~~~ 215 (270)
T PF00437_consen 172 -PNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIRDPEAAEAI 215 (270)
T ss_dssp -SSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-SCHHHHHH
T ss_pred -cceEEEEeecCcccHHHHHHHHhcCCCCcccccccCCHhHHHHH
Confidence 00000001 23445566677788888889999999877766663
No 272
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.28 E-value=0.0016 Score=60.23 Aligned_cols=49 Identities=22% Similarity=0.167 Sum_probs=34.3
Q ss_pred HHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEee
Q 045677 19 EKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLA 67 (352)
Q Consensus 19 ~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~ 67 (352)
..|-+.|..+=....+++|.|++|+|||||+.+++...........|+.
T Consensus 81 ~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs 129 (454)
T TIGR00416 81 GELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVS 129 (454)
T ss_pred HHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 3444444433344688999999999999999999887755544455554
No 273
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.27 E-value=0.0029 Score=51.09 Aligned_cols=24 Identities=21% Similarity=0.249 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 34 TIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 34 ~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
+|+|.|++|+||||+++.++....
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC
Confidence 478999999999999999987653
No 274
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.0023 Score=54.56 Aligned_cols=30 Identities=37% Similarity=0.497 Sum_probs=26.3
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcCCC
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMSHEF 60 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~~~~ 60 (352)
.+..+.|||++|.|||-+|+.++..+.-+|
T Consensus 165 ~Pkg~ll~GppGtGKTlla~~Vaa~mg~nf 194 (388)
T KOG0651|consen 165 PPKGLLLYGPPGTGKTLLARAVAATMGVNF 194 (388)
T ss_pred CCceeEEeCCCCCchhHHHHHHHHhcCCce
Confidence 467899999999999999999998877664
No 275
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.26 E-value=0.0015 Score=50.60 Aligned_cols=25 Identities=32% Similarity=0.531 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHh
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLM 56 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~ 56 (352)
..++.|.|+.|+|||||++.+....
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCC
Confidence 4688999999999999999987654
No 276
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=97.25 E-value=0.00074 Score=56.38 Aligned_cols=43 Identities=23% Similarity=0.295 Sum_probs=32.1
Q ss_pred HHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCC
Q 045677 17 RLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHE 59 (352)
Q Consensus 17 ~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~ 59 (352)
+-.++.+.+....++..++.|+|+||+|||||+..+...+...
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~ 56 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRER 56 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhc
Confidence 3455566555545567899999999999999999999887654
No 277
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=97.25 E-value=0.00068 Score=52.86 Aligned_cols=32 Identities=22% Similarity=0.216 Sum_probs=27.5
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCc
Q 045677 30 NDVRTIGIWGMGGLGKTTLARVVYDLMSHEFD 61 (352)
Q Consensus 30 ~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~ 61 (352)
.+..+++++|.+|+||||+|..+...+.....
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~ 52 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEKLFAKGY 52 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHHHHcCC
Confidence 44578999999999999999999999876643
No 278
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.25 E-value=0.00027 Score=53.34 Aligned_cols=22 Identities=45% Similarity=0.712 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 045677 35 IGIWGMGGLGKTTLARVVYDLM 56 (352)
Q Consensus 35 v~I~G~~GiGKT~La~~~~~~~ 56 (352)
|+|.|.+|+||||+++++...+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999886
No 279
>PRK00889 adenylylsulfate kinase; Provisional
Probab=97.24 E-value=0.0023 Score=51.37 Aligned_cols=28 Identities=32% Similarity=0.442 Sum_probs=24.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcCC
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLMSHE 59 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~~~~ 59 (352)
..+++|.|++|+||||+++.++..+...
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~~ 31 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLREA 31 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4689999999999999999999887543
No 280
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.24 E-value=0.0011 Score=56.60 Aligned_cols=26 Identities=27% Similarity=0.463 Sum_probs=22.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcCC
Q 045677 34 TIGIWGMGGLGKTTLARVVYDLMSHE 59 (352)
Q Consensus 34 ~v~I~G~~GiGKT~La~~~~~~~~~~ 59 (352)
+|+++|.+|+||||+|+.++..+...
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~ 26 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEK 26 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 47899999999999999999887543
No 281
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.24 E-value=0.00025 Score=54.52 Aligned_cols=23 Identities=43% Similarity=0.541 Sum_probs=21.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhc
Q 045677 35 IGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 35 v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
|+|+|++|+|||+|++.+++.+.
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~ 24 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLG 24 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhh
Confidence 78999999999999999999883
No 282
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=97.23 E-value=0.0012 Score=56.37 Aligned_cols=95 Identities=23% Similarity=0.134 Sum_probs=55.4
Q ss_pred HHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHHHHHHH-HhcccCCCccchh
Q 045677 24 LMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQKQLLSD-LLMLADNSIRNVY 102 (352)
Q Consensus 24 ~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~ 102 (352)
.|..+-+..+++=|+||.|+|||+++.+++-..+......+|+...+... ..-...+... +....-....+.+
T Consensus 52 ~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fIDtE~~l~------p~r~~~l~~~~~d~l~v~~~~~~e 125 (279)
T COG0468 52 ALGGGLPRGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFIDTEHALD------PERAKQLGVDLLDNLLVSQPDTGE 125 (279)
T ss_pred HhcCCcccceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEeCCCCCC------HHHHHHHHHhhhcceeEecCCCHH
Confidence 33333345678889999999999999999988777777778876332221 2233344433 2221122233333
Q ss_pred hhHHHHHh---hhCCceEEEEEeCC
Q 045677 103 DGVNMIGS---RLRHKKVLLLIDDV 124 (352)
Q Consensus 103 ~~~~~~~~---~l~~~~~llvlDd~ 124 (352)
+....+.. ...+.--|+|+|.+
T Consensus 126 ~q~~i~~~~~~~~~~~i~LvVVDSv 150 (279)
T COG0468 126 QQLEIAEKLARSGAEKIDLLVVDSV 150 (279)
T ss_pred HHHHHHHHHHHhccCCCCEEEEecC
Confidence 33333333 33333569999998
No 283
>PRK06547 hypothetical protein; Provisional
Probab=97.23 E-value=0.00061 Score=54.28 Aligned_cols=28 Identities=36% Similarity=0.319 Sum_probs=24.5
Q ss_pred CCCeEEEEEEcCCCCcHHHHHHHHHHHh
Q 045677 29 SNDVRTIGIWGMGGLGKTTLARVVYDLM 56 (352)
Q Consensus 29 ~~~~~~v~I~G~~GiGKT~La~~~~~~~ 56 (352)
.....+|.|.|++|+||||++..++...
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3566889999999999999999998874
No 284
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=97.22 E-value=0.00099 Score=53.38 Aligned_cols=120 Identities=12% Similarity=-0.014 Sum_probs=59.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHHHHH-HHH---hcccCCCc-------cc
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQKQLL-SDL---LMLADNSI-------RN 100 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~---~~~~~~~~-------~~ 100 (352)
...|.|+|..|-||||.|.-.+.+...+...+..+.-+.... ..+. ...+..+- -.+ ........ ..
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~-~~GE-~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~ 99 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAW-STGE-RNLLEFGGGVEFHVMGTGFTWETQDRERDIAA 99 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCC-ccCH-HHHHhcCCCcEEEECCCCCcccCCCcHHHHHH
Confidence 367899999999999999888877544433333332222110 1111 22222210 000 00000000 11
Q ss_pred hhhhHHHHHhhhC-CceEEEEEeCCC-----ChhhhhhhhCCCCCCCCCceEEEEeCch
Q 045677 101 VYDGVNMIGSRLR-HKKVLLLIDDVA-----DVEQLRGLFGKRDWFGLGSMIIITTRDE 153 (352)
Q Consensus 101 ~~~~~~~~~~~l~-~~~~llvlDd~~-----~~~~~~~l~~~~~~~~~~~~iiitsr~~ 153 (352)
........++.+. +.-=++|||++- ..-..+++...+...+....+|+|.|+.
T Consensus 100 ~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 100 AREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 1222333344443 455699999982 2222333333333346778999999965
No 285
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=97.21 E-value=0.0025 Score=51.62 Aligned_cols=29 Identities=24% Similarity=0.334 Sum_probs=25.0
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcCC
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMSHE 59 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~~~ 59 (352)
...++.|.|++|+||||+++.+...+...
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~~l~~~ 45 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEKKLESK 45 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 45789999999999999999999887543
No 286
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.21 E-value=0.0026 Score=50.96 Aligned_cols=22 Identities=41% Similarity=0.499 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 045677 35 IGIWGMGGLGKTTLARVVYDLM 56 (352)
Q Consensus 35 v~I~G~~GiGKT~La~~~~~~~ 56 (352)
+.|.|++|+||||+|+.+++++
T Consensus 3 iiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 3 ILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999884
No 287
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.20 E-value=0.0022 Score=51.29 Aligned_cols=22 Identities=27% Similarity=0.305 Sum_probs=19.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHH
Q 045677 32 VRTIGIWGMGGLGKTTLARVVY 53 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~ 53 (352)
..++.|.|+.|+|||||.+.+.
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4688999999999999999875
No 288
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.20 E-value=0.0041 Score=56.22 Aligned_cols=25 Identities=24% Similarity=0.151 Sum_probs=22.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHh
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLM 56 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~ 56 (352)
..+++|+|++|+||||++.+++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4678899999999999999998764
No 289
>PHA02244 ATPase-like protein
Probab=97.19 E-value=0.00047 Score=60.95 Aligned_cols=49 Identities=12% Similarity=0.158 Sum_probs=34.9
Q ss_pred CCcCcccccHHHHHH----HHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCC
Q 045677 7 IPKELVGMESRLEKL----KFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHE 59 (352)
Q Consensus 7 ~~~~~vGR~~~l~~l----~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~ 59 (352)
....|+|+...+... ..++.. ...|+|+|++|+|||+||..+++.+...
T Consensus 94 ~d~~~ig~sp~~~~~~~ri~r~l~~----~~PVLL~GppGtGKTtLA~aLA~~lg~p 146 (383)
T PHA02244 94 IDTTKIASNPTFHYETADIAKIVNA----NIPVFLKGGAGSGKNHIAEQIAEALDLD 146 (383)
T ss_pred CCCcccCCCHHHHHHHHHHHHHHhc----CCCEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 345677877666543 344442 2458899999999999999999886543
No 290
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=97.18 E-value=0.0023 Score=59.75 Aligned_cols=119 Identities=15% Similarity=0.137 Sum_probs=66.7
Q ss_pred ccccHH-HHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHHHHHHHH
Q 045677 12 VGMESR-LEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQKQLLSDL 90 (352)
Q Consensus 12 vGR~~~-l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 90 (352)
.|-..+ ++.+...+.. ...+++|+|+.|+||||++..+...+.......+.+.+.-... . .. + .+
T Consensus 224 Lg~~~~~~~~l~~~~~~---~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~~----~-~~----~-~q- 289 (486)
T TIGR02533 224 LGMSPELLSRFERLIRR---PHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQ----I-EG----I-GQ- 289 (486)
T ss_pred cCCCHHHHHHHHHHHhc---CCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeeee----c-CC----C-ce-
Confidence 444443 3445554442 3368999999999999999988877654322333332111000 0 00 0 00
Q ss_pred hcccCCCccchhhhHHHHHhhhCCceEEEEEeCCCChhhhhhhhCCCCCCCCCceEEEEeC
Q 045677 91 LMLADNSIRNVYDGVNMIGSRLRHKKVLLLIDDVADVEQLRGLFGKRDWFGLGSMIIITTR 151 (352)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~~~~~~l~~~~~~~~~~~~iiitsr 151 (352)
..............++..+...+=+|++.++.+.+.....+.... -++.++||-
T Consensus 290 ---~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEiRd~eta~~a~~aa~----tGHlvlsTl 343 (486)
T TIGR02533 290 ---IQVNPKIGLTFAAGLRAILRQDPDIIMVGEIRDLETAQIAIQASL----TGHLVLSTL 343 (486)
T ss_pred ---EEEccccCccHHHHHHHHHhcCCCEEEEeCCCCHHHHHHHHHHHH----hCCcEEEEE
Confidence 000011113456677888888999999999988876555444321 235566664
No 291
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=97.18 E-value=0.00089 Score=64.16 Aligned_cols=62 Identities=21% Similarity=0.330 Sum_probs=47.9
Q ss_pred CCCCCCcCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCC-CcceeEeee
Q 045677 3 SELEIPKELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHE-FDGSSFLAD 68 (352)
Q Consensus 3 ~~~~~~~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~-~~~~~~~~~ 68 (352)
-|+..-+.++|.+..++.|...+... +.++++|++|+|||++++.+++.+... +....|+.+
T Consensus 25 ~~~~~~~~vigq~~a~~~L~~~~~~~----~~~l~~G~~G~GKttla~~l~~~l~~~~~~~~~~~~n 87 (637)
T PRK13765 25 VPERLIDQVIGQEHAVEVIKKAAKQR----RHVMMIGSPGTGKSMLAKAMAELLPKEELQDILVYPN 87 (637)
T ss_pred cCcccHHHcCChHHHHHHHHHHHHhC----CeEEEECCCCCcHHHHHHHHHHHcChHhHHHheEeeC
Confidence 35566677899999999998877743 478999999999999999999876433 355566653
No 292
>COG4240 Predicted kinase [General function prediction only]
Probab=97.18 E-value=0.0012 Score=53.65 Aligned_cols=89 Identities=17% Similarity=0.154 Sum_probs=51.5
Q ss_pred CCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHHHHHHHHhcccCCCccchhhhHHHH
Q 045677 29 SNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQKQLLSDLLMLADNSIRNVYDGVNMI 108 (352)
Q Consensus 29 ~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (352)
.+++-++.|.||.|+||||++..+...+.+.+...+....+.+...+...-..+.+++-.-+.........+.....+.+
T Consensus 47 ~grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlglnVL 126 (300)
T COG4240 47 RGRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLNVL 126 (300)
T ss_pred cCCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHHHH
Confidence 34567888999999999999999999887776323333334444443333223333331112222233344555566666
Q ss_pred HhhhCCceE
Q 045677 109 GSRLRHKKV 117 (352)
Q Consensus 109 ~~~l~~~~~ 117 (352)
....++++.
T Consensus 127 nai~~g~~~ 135 (300)
T COG4240 127 NAIARGGPT 135 (300)
T ss_pred HHHhcCCCC
Confidence 666666544
No 293
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.18 E-value=0.002 Score=51.60 Aligned_cols=25 Identities=40% Similarity=0.666 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHh
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLM 56 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~ 56 (352)
..++.|.|+.|+|||||++.++-..
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcc
Confidence 4688999999999999999988654
No 294
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=97.18 E-value=0.018 Score=51.09 Aligned_cols=55 Identities=22% Similarity=0.125 Sum_probs=37.8
Q ss_pred cccEEecCCCCHhHHHHHHHhhh----cCCCCCchhHHHHHHHHHHHcCCCchhHHHHHHhh
Q 045677 161 VEEVYKLEALNFDEAFRLFCLKA----FDTYKPLEEYLELAKCFVKYASGLPLAVDVLVSFL 218 (352)
Q Consensus 161 ~~~~~~l~~l~~~e~~~ll~~~~----~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~~l 218 (352)
...++++++++.+|+..++.-.. .....+ .++..++++-.+.|||..++.++..+
T Consensus 402 pf~pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~---~Ee~~kql~fLSngNP~l~~~lca~~ 460 (461)
T KOG3928|consen 402 PFVPIEVENYTLDEFEALIDYYLQSNWLLKKVP---GEENIKQLYFLSNGNPSLMERLCAFL 460 (461)
T ss_pred CcCccccCCCCHHHHHHHHHHHHHhhHHHhhcC---cccchhhhhhhcCCCHHHHHHHHHhc
Confidence 34578999999999988765332 111111 14567788888899998887777654
No 295
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.18 E-value=0.0047 Score=53.41 Aligned_cols=37 Identities=19% Similarity=0.011 Sum_probs=28.3
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcCC-CcceeEee
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMSHE-FDGSSFLA 67 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~~~-~~~~~~~~ 67 (352)
...+++|.|++|+|||+|+.+++...... ...+.|++
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS 66 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTIS 66 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEE
Confidence 34688999999999999999998876444 44455554
No 296
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.17 E-value=0.0041 Score=54.28 Aligned_cols=41 Identities=22% Similarity=0.230 Sum_probs=31.4
Q ss_pred cccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHH
Q 045677 11 LVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVY 53 (352)
Q Consensus 11 ~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~ 53 (352)
.-+|..+-.--.++|. .++..+|.+.|.+|+|||-||....
T Consensus 226 i~prn~eQ~~ALdlLl--d~dI~lV~L~G~AGtGKTlLALaAg 266 (436)
T COG1875 226 IRPRNAEQRVALDLLL--DDDIDLVSLGGKAGTGKTLLALAAG 266 (436)
T ss_pred cCcccHHHHHHHHHhc--CCCCCeEEeeccCCccHhHHHHHHH
Confidence 4566767666666666 5678999999999999998885544
No 297
>PRK07261 topology modulation protein; Provisional
Probab=97.17 E-value=0.00034 Score=55.85 Aligned_cols=23 Identities=43% Similarity=0.580 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 045677 34 TIGIWGMGGLGKTTLARVVYDLM 56 (352)
Q Consensus 34 ~v~I~G~~GiGKT~La~~~~~~~ 56 (352)
-|+|+|++|+||||||+++....
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 37899999999999999988764
No 298
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.16 E-value=0.0062 Score=54.97 Aligned_cols=27 Identities=26% Similarity=0.303 Sum_probs=23.7
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
.+++++++|+.|+||||.+..++..+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357899999999999999999988764
No 299
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.16 E-value=0.00099 Score=56.01 Aligned_cols=37 Identities=24% Similarity=0.240 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHh
Q 045677 16 SRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLM 56 (352)
Q Consensus 16 ~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~ 56 (352)
...+.+...+... .+.+|+||+|+|||+++..+...+
T Consensus 5 ~Q~~Ai~~~~~~~----~~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 5 SQREAIQSALSSN----GITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp HHHHHHHHHCTSS----E-EEEE-STTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC----CCEEEECCCCCChHHHHHHHHHHh
Confidence 3445555555522 378899999999999888888776
No 300
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.0042 Score=61.10 Aligned_cols=104 Identities=14% Similarity=0.201 Sum_probs=63.0
Q ss_pred CcCcccccHHHHHHHHHHhcC-----C-CCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHH
Q 045677 8 PKELVGMESRLEKLKFLMCTG-----S-NDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVIS 81 (352)
Q Consensus 8 ~~~~vGR~~~l~~l~~~l~~~-----~-~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (352)
....+|.+..+..+.+.+... + ....+.++.||.|+|||.||+.++..+.......+-+. ++.
T Consensus 561 ~~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriD-mse---------- 629 (898)
T KOG1051|consen 561 HERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLD-MSE---------- 629 (898)
T ss_pred HhhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEec-hhh----------
Confidence 345688888899988877741 1 13567789999999999999999998855554444443 211
Q ss_pred HHHHHHHHHhcccCCCccchhhhHHHHHhhhCCce-EEEEEeCCCC
Q 045677 82 LQKQLLSDLLMLADNSIRNVYDGVNMIGSRLRHKK-VLLLIDDVAD 126 (352)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~llvlDd~~~ 126 (352)
... ...+.+.++ .-........+-+.++.+| .+|+|||++.
T Consensus 630 ~~e--vskligsp~--gyvG~e~gg~LteavrrrP~sVVLfdeIEk 671 (898)
T KOG1051|consen 630 FQE--VSKLIGSPP--GYVGKEEGGQLTEAVKRRPYSVVLFEEIEK 671 (898)
T ss_pred hhh--hhhccCCCc--ccccchhHHHHHHHHhcCCceEEEEechhh
Confidence 111 222222111 1111222334555666554 5888999964
No 301
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.15 E-value=0.00043 Score=46.00 Aligned_cols=22 Identities=36% Similarity=0.539 Sum_probs=20.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 045677 35 IGIWGMGGLGKTTLARVVYDLM 56 (352)
Q Consensus 35 v~I~G~~GiGKT~La~~~~~~~ 56 (352)
++|.|++|+||||+++.+...+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999887
No 302
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=97.14 E-value=0.0012 Score=52.65 Aligned_cols=41 Identities=24% Similarity=0.275 Sum_probs=29.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhc-CCCcceeEeeecccccc
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLMS-HEFDGSSFLADVRERCD 74 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~~-~~~~~~~~~~~~~~~~~ 74 (352)
..+++.||+|+|||.||+.+++.+. ......+ ..++...+.
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~-~~d~s~~~~ 45 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFVGSERPLI-RIDMSEYSE 45 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEE-EEEGGGHCS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhccCCccchH-HHhhhcccc
Confidence 5688999999999999999999877 4433333 334444433
No 303
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.14 E-value=0.0022 Score=49.74 Aligned_cols=25 Identities=40% Similarity=0.537 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHh
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLM 56 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~ 56 (352)
.-.+.|+||+|+|||||.+.++.-.
T Consensus 29 Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 29 GEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred CceEEEeCCCCccHHHHHHHHHhcc
Confidence 3568899999999999999998743
No 304
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.14 E-value=0.0019 Score=52.36 Aligned_cols=92 Identities=21% Similarity=0.174 Sum_probs=49.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHHHHHHHHhccc-CCCccchhhhHHHHHhh
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQKQLLSDLLMLA-DNSIRNVYDGVNMIGSR 111 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 111 (352)
..+.|.|+.|+||||+++.+...+.... ..+.+.+......... .. ..+.... ...........+.+...
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~i~~~~-~~i~ied~~E~~~~~~-------~~-~~~~~~~~~~~~~~~~~~~~~l~~~ 96 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAFIPPDE-RIITIEDTAELQLPHP-------NW-VRLVTRPGNVEGSGEVTMADLLRSA 96 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCCCC-CEEEECCccccCCCCC-------CE-EEEEEecCCCCCCCccCHHHHHHHH
Confidence 6799999999999999999887765332 2232221111100000 00 0000000 00011122344555666
Q ss_pred hCCceEEEEEeCCCChhhhhhh
Q 045677 112 LRHKKVLLLIDDVADVEQLRGL 133 (352)
Q Consensus 112 l~~~~~llvlDd~~~~~~~~~l 133 (352)
+...+-.++++++.+.+.+..+
T Consensus 97 lR~~pd~i~igEir~~ea~~~~ 118 (186)
T cd01130 97 LRMRPDRIIVGEVRGGEALDLL 118 (186)
T ss_pred hccCCCEEEEEccCcHHHHHHH
Confidence 6777889999999877665533
No 305
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.14 E-value=0.00046 Score=56.41 Aligned_cols=26 Identities=42% Similarity=0.634 Sum_probs=23.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcCC
Q 045677 34 TIGIWGMGGLGKTTLARVVYDLMSHE 59 (352)
Q Consensus 34 ~v~I~G~~GiGKT~La~~~~~~~~~~ 59 (352)
+|.|.|++|+||||||+.+...+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 58899999999999999999998755
No 306
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.13 E-value=0.0028 Score=56.72 Aligned_cols=27 Identities=22% Similarity=0.214 Sum_probs=23.7
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
...++.++||+|+||||++..++....
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~ 162 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCV 162 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357899999999999999999998754
No 307
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.12 E-value=0.0023 Score=51.24 Aligned_cols=25 Identities=36% Similarity=0.526 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHh
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLM 56 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~ 56 (352)
..++.|.|+.|+|||||++.++--.
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC
Confidence 3689999999999999999887644
No 308
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.12 E-value=0.00056 Score=58.85 Aligned_cols=26 Identities=27% Similarity=0.405 Sum_probs=22.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcC
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLMSH 58 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~~~ 58 (352)
+.|+++|++|+|||++++.+...+..
T Consensus 34 ~pvLl~G~~GtGKT~li~~~l~~l~~ 59 (272)
T PF12775_consen 34 RPVLLVGPSGTGKTSLIQNFLSSLDS 59 (272)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCSTT
T ss_pred CcEEEECCCCCchhHHHHhhhccCCc
Confidence 67899999999999999998876543
No 309
>PF13245 AAA_19: Part of AAA domain
Probab=97.12 E-value=0.00053 Score=46.40 Aligned_cols=24 Identities=25% Similarity=0.177 Sum_probs=18.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHh
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLM 56 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~ 56 (352)
+++.|.|++|+|||+++...+..+
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 677889999999996666655543
No 310
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=97.12 E-value=0.00033 Score=51.94 Aligned_cols=28 Identities=32% Similarity=0.494 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhcCCCcc
Q 045677 35 IGIWGMGGLGKTTLARVVYDLMSHEFDG 62 (352)
Q Consensus 35 v~I~G~~GiGKT~La~~~~~~~~~~~~~ 62 (352)
|+|+|.+|+|||++|+.++..+...|..
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeE
Confidence 7899999999999999999998877643
No 311
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.11 E-value=0.00095 Score=56.11 Aligned_cols=32 Identities=31% Similarity=0.431 Sum_probs=27.1
Q ss_pred CCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCC
Q 045677 29 SNDVRTIGIWGMGGLGKTTLARVVYDLMSHEF 60 (352)
Q Consensus 29 ~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~ 60 (352)
.++..++.|.|++|+|||||++.+...+....
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~ 61 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQDG 61 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhhcc
Confidence 35578899999999999999999998876553
No 312
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.10 E-value=0.0006 Score=54.07 Aligned_cols=24 Identities=42% Similarity=0.487 Sum_probs=20.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhcC
Q 045677 35 IGIWGMGGLGKTTLARVVYDLMSH 58 (352)
Q Consensus 35 v~I~G~~GiGKT~La~~~~~~~~~ 58 (352)
++|+|++|+|||||+..+++.++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 689999999999999999988754
No 313
>PRK10436 hypothetical protein; Provisional
Probab=97.10 E-value=0.0036 Score=57.91 Aligned_cols=120 Identities=13% Similarity=0.120 Sum_probs=67.5
Q ss_pred ccccH-HHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHHHHHHHH
Q 045677 12 VGMES-RLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQKQLLSDL 90 (352)
Q Consensus 12 vGR~~-~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 90 (352)
.|-.. .++.+.+.+.. ...+++|+|+.|+||||.+..+...+.......+-+.+. .... +.. .
T Consensus 200 LG~~~~~~~~l~~~~~~---~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDP-----vE~~----l~g-i--- 263 (462)
T PRK10436 200 LGMTPAQLAQFRQALQQ---PQGLILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDP-----VEIP----LAG-I--- 263 (462)
T ss_pred cCcCHHHHHHHHHHHHh---cCCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecCC-----cccc----CCC-c---
Confidence 34433 34455555542 347899999999999999888777764432222222211 1100 000 0
Q ss_pred hcccCCCccchhhhHHHHHhhhCCceEEEEEeCCCChhhhhhhhCCCCCCCCCceEEEEeCc
Q 045677 91 LMLADNSIRNVYDGVNMIGSRLRHKKVLLLIDDVADVEQLRGLFGKRDWFGLGSMIIITTRD 152 (352)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~~~~~~l~~~~~~~~~~~~iiitsr~ 152 (352)
................++..+...|=+|++.++.+.+.....+.... -++.++||-.
T Consensus 264 -~Q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEIRD~eta~~al~AA~----TGHlVlsTlH 320 (462)
T PRK10436 264 -NQTQIHPKAGLTFQRVLRALLRQDPDVIMVGEIRDGETAEIAIKAAQ----TGHLVLSTLH 320 (462)
T ss_pred -ceEeeCCccCcCHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHHHH----cCCcEEEeec
Confidence 00001111223466778888889999999999988776654443321 2355776653
No 314
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.09 E-value=0.0012 Score=52.22 Aligned_cols=114 Identities=17% Similarity=0.212 Sum_probs=55.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHHhh
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQKQLLSDLLMLADNSIRNVYDGVNMIGSR 111 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (352)
..++.|.|+.|+|||||++.++-... .....+++... ..... .. .... .....-.. .....+...-.+...
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~~-~~~G~v~~~g~-~~~~~-~~-~~~~---~~~i~~~~--qLS~G~~qrl~lara 96 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLYK-PDSGEILVDGK-EVSFA-SP-RDAR---RAGIAMVY--QLSVGERQMVEIARA 96 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCE-ECCcC-CH-HHHH---hcCeEEEE--ecCHHHHHHHHHHHH
Confidence 46889999999999999998875543 22334444321 11110 00 0100 00000000 022222223334445
Q ss_pred hCCceEEEEEeCCC---ChhhhhhhhCCCCCC-CCCceEEEEeCchh
Q 045677 112 LRHKKVLLLIDDVA---DVEQLRGLFGKRDWF-GLGSMIIITTRDEH 154 (352)
Q Consensus 112 l~~~~~llvlDd~~---~~~~~~~l~~~~~~~-~~~~~iiitsr~~~ 154 (352)
+...+-++++|+-. +....+.+...+... ..+..+|++|.+..
T Consensus 97 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 143 (163)
T cd03216 97 LARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLD 143 (163)
T ss_pred HhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 56678899999983 333333332222111 23556777777654
No 315
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.09 E-value=0.0056 Score=56.00 Aligned_cols=115 Identities=17% Similarity=0.124 Sum_probs=68.6
Q ss_pred HHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHHHHHHHHhcccCCC
Q 045677 18 LEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQKQLLSDLLMLADNS 97 (352)
Q Consensus 18 l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 97 (352)
.+.+.+++. .+..+++++||.|+||||....+...+......++-+.+.-... .++. ......
T Consensus 247 ~~~~~~~~~---~p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~~-~~gI-------------~Q~qVN 309 (500)
T COG2804 247 LARLLRLLN---RPQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEYQ-LPGI-------------NQVQVN 309 (500)
T ss_pred HHHHHHHHh---CCCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeeee-cCCc-------------ceeecc
Confidence 445555555 34589999999999999999999888766655444433210000 0000 000111
Q ss_pred ccchhhhHHHHHhhhCCceEEEEEeCCCChhhhhhhhCCCCCCCCCceEEEEeCch
Q 045677 98 IRNVYDGVNMIGSRLRHKKVLLLIDDVADVEQLRGLFGKRDWFGLGSMIIITTRDE 153 (352)
Q Consensus 98 ~~~~~~~~~~~~~~l~~~~~llvlDd~~~~~~~~~l~~~~~~~~~~~~iiitsr~~ 153 (352)
....-.....++..+++.|=+|++.++.|.+.-+...... .-++.|+||-..
T Consensus 310 ~k~gltfa~~LRa~LRqDPDvImVGEIRD~ETAeiavqAa----lTGHLVlSTlHt 361 (500)
T COG2804 310 PKIGLTFARALRAILRQDPDVIMVGEIRDLETAEIAVQAA----LTGHLVLSTLHT 361 (500)
T ss_pred cccCCCHHHHHHHHhccCCCeEEEeccCCHHHHHHHHHHH----hcCCeEeeeccc
Confidence 1122234566777888888899999998776644444331 234677777543
No 316
>PRK08233 hypothetical protein; Provisional
Probab=97.09 E-value=0.00051 Score=55.47 Aligned_cols=26 Identities=31% Similarity=0.373 Sum_probs=23.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
..+|+|.|++|+|||||+..++..+.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 37899999999999999999998764
No 317
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.09 E-value=0.078 Score=45.92 Aligned_cols=68 Identities=19% Similarity=0.213 Sum_probs=47.2
Q ss_pred CceEEEEEeCCCC--hhhhhhhhCCCCCCCCCceEEEEeCch-hHhhhc-CcccEEecCCCCHhHHHHHHHhh
Q 045677 114 HKKVLLLIDDVAD--VEQLRGLFGKRDWFGLGSMIIITTRDE-HLLKLH-RVEEVYKLEALNFDEAFRLFCLK 182 (352)
Q Consensus 114 ~~~~llvlDd~~~--~~~~~~l~~~~~~~~~~~~iiitsr~~-~~~~~~-~~~~~~~l~~l~~~e~~~ll~~~ 182 (352)
+.+-++|||+++. ......++..+.+.+.++.+|++|.+. .+.+.. .....+.+.+ +.++..+++...
T Consensus 103 ~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~~~ 174 (290)
T PRK07276 103 GKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLEQK 174 (290)
T ss_pred CCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeCCC-cHHHHHHHHHHc
Confidence 4556999999974 456888888888777777777766543 444443 3456778876 777777777644
No 318
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.08 E-value=0.00053 Score=56.84 Aligned_cols=23 Identities=22% Similarity=0.125 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHH
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYD 54 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~ 54 (352)
.+.++|+|+.|.|||||++.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 38899999999999999999874
No 319
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=97.08 E-value=0.00073 Score=60.72 Aligned_cols=54 Identities=22% Similarity=0.365 Sum_probs=41.6
Q ss_pred CCcCcccccHHHHHHHHHHhcC------------CCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCC
Q 045677 7 IPKELVGMESRLEKLKFLMCTG------------SNDVRTIGIWGMGGLGKTTLARVVYDLMSHEF 60 (352)
Q Consensus 7 ~~~~~vGR~~~l~~l~~~l~~~------------~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~ 60 (352)
+..+++|.+...+.+...+... .-.++-++++||+|+|||++|+.++..+...|
T Consensus 10 Ld~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~f 75 (441)
T TIGR00390 10 LDKYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 75 (441)
T ss_pred HhhhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 4567899999999887666631 11236789999999999999999998875543
No 320
>PRK15115 response regulator GlrR; Provisional
Probab=97.08 E-value=0.011 Score=55.09 Aligned_cols=49 Identities=18% Similarity=0.156 Sum_probs=36.5
Q ss_pred cCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 9 KELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 9 ~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
..++|+...+..+.+....-......|+|+|++|+|||++|+.+.....
T Consensus 134 ~~lig~s~~~~~~~~~~~~~a~~~~~vli~Ge~GtGk~~lA~~ih~~s~ 182 (444)
T PRK15115 134 EAIVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNASP 182 (444)
T ss_pred hcccccCHHHHHHHHHHHhhccCCCeEEEEcCCcchHHHHHHHHHHhcC
Confidence 3578888888777665554233346688999999999999998877644
No 321
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.07 E-value=0.00086 Score=52.30 Aligned_cols=36 Identities=28% Similarity=0.404 Sum_probs=30.0
Q ss_pred cHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHH
Q 045677 15 ESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 15 ~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
...+++|.+++.. +.+++.|++|+|||||++.+...
T Consensus 23 ~~g~~~l~~~l~~-----k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 23 GEGIEELKELLKG-----KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTTHHHHHHHHTT-----SEEEEECSTTSSHHHHHHHHHTS
T ss_pred CcCHHHHHHHhcC-----CEEEEECCCCCCHHHHHHHHHhh
Confidence 3457888888872 68899999999999999998854
No 322
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.06 E-value=0.0013 Score=55.69 Aligned_cols=49 Identities=12% Similarity=0.097 Sum_probs=35.1
Q ss_pred HHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEee
Q 045677 19 EKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLA 67 (352)
Q Consensus 19 ~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~ 67 (352)
..|-+.|..+=....+++|.|++|+|||+|+.+++....+....++|+.
T Consensus 8 ~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs 56 (237)
T TIGR03877 8 PGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA 56 (237)
T ss_pred HhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 3445555544445689999999999999999998876444455566664
No 323
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=97.06 E-value=0.0026 Score=56.22 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=21.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhcC
Q 045677 35 IGIWGMGGLGKTTLARVVYDLMSH 58 (352)
Q Consensus 35 v~I~G~~GiGKT~La~~~~~~~~~ 58 (352)
+++.|.+|+||||+++.+...+..
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~ 25 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRR 25 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHh
Confidence 679999999999999999988753
No 324
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.06 E-value=0.0044 Score=54.43 Aligned_cols=36 Identities=19% Similarity=0.240 Sum_probs=26.4
Q ss_pred HHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHH
Q 045677 20 KLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 20 ~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
.|-+.|..+=....++-|+|++|+|||+|+.+++-.
T Consensus 84 ~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~ 119 (313)
T TIGR02238 84 ALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVT 119 (313)
T ss_pred HHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHH
Confidence 344445433345688889999999999999988754
No 325
>COG3910 Predicted ATPase [General function prediction only]
Probab=97.06 E-value=0.0053 Score=48.54 Aligned_cols=25 Identities=28% Similarity=0.213 Sum_probs=22.0
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHH
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
..++.+|+|+.|+|||||+..++-.
T Consensus 36 ~apIT~i~GENGsGKSTLLEaiA~~ 60 (233)
T COG3910 36 RAPITFITGENGSGKSTLLEAIAAG 60 (233)
T ss_pred cCceEEEEcCCCccHHHHHHHHHhh
Confidence 4589999999999999999988764
No 326
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=97.06 E-value=0.0033 Score=55.51 Aligned_cols=37 Identities=22% Similarity=0.242 Sum_probs=27.5
Q ss_pred HHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 21 LKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 21 l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
+.+.|..+=....++.|+|++|+|||+|+.+++....
T Consensus 84 lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~ 120 (310)
T TIGR02236 84 LDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQ 120 (310)
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3344443223468888999999999999999987754
No 327
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.06 E-value=0.0012 Score=56.08 Aligned_cols=43 Identities=23% Similarity=0.305 Sum_probs=34.7
Q ss_pred HHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCc
Q 045677 19 EKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFD 61 (352)
Q Consensus 19 ~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~ 61 (352)
.+|...+....++..++.|+|+||+|||||...+...+.++..
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~ 80 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGH 80 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCc
Confidence 4555555555677889999999999999999999998876654
No 328
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.05 E-value=0.0078 Score=53.65 Aligned_cols=36 Identities=25% Similarity=0.279 Sum_probs=27.4
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEe
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFL 66 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~ 66 (352)
+.++++|+|+.|+||||++..++..+......+.++
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lI 240 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFI 240 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 468899999999999999999988764443333333
No 329
>PTZ00301 uridine kinase; Provisional
Probab=97.04 E-value=0.00066 Score=55.90 Aligned_cols=28 Identities=29% Similarity=0.455 Sum_probs=24.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcCC
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLMSHE 59 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~~~~ 59 (352)
+.+|.|.|++|+||||||+.+.+.+...
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~ 30 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAH 30 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhh
Confidence 4789999999999999999998876443
No 330
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.04 E-value=0.0021 Score=60.26 Aligned_cols=50 Identities=20% Similarity=0.145 Sum_probs=37.7
Q ss_pred HHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEee
Q 045677 18 LEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLA 67 (352)
Q Consensus 18 l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~ 67 (352)
+..|-+.|..+=....+++|.|++|+|||+|+.+++....++...+.|+.
T Consensus 249 i~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s 298 (484)
T TIGR02655 249 VVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFA 298 (484)
T ss_pred hHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 45566666654455688999999999999999999988755555555554
No 331
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=97.03 E-value=0.0017 Score=55.44 Aligned_cols=25 Identities=28% Similarity=0.186 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHh
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLM 56 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~ 56 (352)
..++=|+|++|+|||.|+.+++-..
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~~ 62 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVNV 62 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CcEEEEEEecccccchHHHHHHHHh
Confidence 4567799999999999999987653
No 332
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.03 E-value=0.0011 Score=56.69 Aligned_cols=37 Identities=16% Similarity=0.166 Sum_probs=29.0
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEee
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLA 67 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~ 67 (352)
...++.|+|++|+|||+|+.+++.........++|+.
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis 71 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVT 71 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 4688999999999999999998877544444556654
No 333
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.03 E-value=0.0056 Score=52.73 Aligned_cols=36 Identities=28% Similarity=0.303 Sum_probs=27.6
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEee
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLA 67 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~ 67 (352)
+.+++.++|++|+||||.+..++..+.... ..+.+.
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g-~~V~li 106 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQG-KSVLLA 106 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcC-CEEEEE
Confidence 457888999999999999999998876553 334443
No 334
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.03 E-value=0.002 Score=58.10 Aligned_cols=40 Identities=15% Similarity=0.179 Sum_probs=29.8
Q ss_pred HHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCC
Q 045677 19 EKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEF 60 (352)
Q Consensus 19 ~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~ 60 (352)
+.+.+.+.. ..+..++|.|+||+|||+|.+.+...++...
T Consensus 11 ~~v~~~~~~--~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~ 50 (364)
T PF05970_consen 11 DTVIEAIEN--EEGLNFFVTGPAGTGKSFLIKAIIDYLRSRG 50 (364)
T ss_pred HHHHHHHHc--cCCcEEEEEcCCCCChhHHHHHHHHHhcccc
Confidence 344444442 3457889999999999999999998876643
No 335
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.02 E-value=0.00075 Score=54.74 Aligned_cols=33 Identities=21% Similarity=0.089 Sum_probs=26.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhcCCCcceeEee
Q 045677 35 IGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLA 67 (352)
Q Consensus 35 v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~ 67 (352)
++|.|++|+|||+|+.+++....+......|+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s 34 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVT 34 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 689999999999999999887655545555554
No 336
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.02 E-value=0.00079 Score=55.74 Aligned_cols=27 Identities=41% Similarity=0.592 Sum_probs=24.3
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHh
Q 045677 30 NDVRTIGIWGMGGLGKTTLARVVYDLM 56 (352)
Q Consensus 30 ~~~~~v~I~G~~GiGKT~La~~~~~~~ 56 (352)
.++.+|.|.|++|+|||||+..+...+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356889999999999999999999877
No 337
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=97.02 E-value=0.0032 Score=55.67 Aligned_cols=38 Identities=21% Similarity=0.236 Sum_probs=27.8
Q ss_pred HHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 20 KLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 20 ~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
.+.+.|..+=....++.|+|++|+|||+|+.+++....
T Consensus 90 ~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~ 127 (317)
T PRK04301 90 ELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQ 127 (317)
T ss_pred HHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhc
Confidence 34444443223468888999999999999999987643
No 338
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=97.01 E-value=0.0012 Score=59.46 Aligned_cols=54 Identities=22% Similarity=0.354 Sum_probs=42.0
Q ss_pred CCcCcccccHHHHHHHHHHhcC--------C----CCeEEEEEEcCCCCcHHHHHHHHHHHhcCCC
Q 045677 7 IPKELVGMESRLEKLKFLMCTG--------S----NDVRTIGIWGMGGLGKTTLARVVYDLMSHEF 60 (352)
Q Consensus 7 ~~~~~vGR~~~l~~l~~~l~~~--------~----~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~ 60 (352)
+..+++|.+...+.+..++... . -..+.++++||+|+|||++|+.++..+...|
T Consensus 13 Ld~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~f 78 (443)
T PRK05201 13 LDKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 78 (443)
T ss_pred hccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChh
Confidence 4567899999999998877530 0 1136789999999999999999998875443
No 339
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.01 E-value=0.0032 Score=50.41 Aligned_cols=25 Identities=36% Similarity=0.644 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHh
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLM 56 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~ 56 (352)
..++.|.|+.|+|||||++.++-..
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999999999887643
No 340
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=97.01 E-value=0.0015 Score=56.09 Aligned_cols=45 Identities=20% Similarity=0.113 Sum_probs=34.9
Q ss_pred HHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEee
Q 045677 23 FLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLA 67 (352)
Q Consensus 23 ~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~ 67 (352)
+.+..+=+...+++|+|++|+|||+|+.+++....+....++|+.
T Consensus 14 ~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs 58 (260)
T COG0467 14 EILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVS 58 (260)
T ss_pred HHhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEE
Confidence 333433345689999999999999999999999777766666665
No 341
>PRK10867 signal recognition particle protein; Provisional
Probab=97.01 E-value=0.0039 Score=57.08 Aligned_cols=29 Identities=28% Similarity=0.341 Sum_probs=24.9
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcCC
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMSHE 59 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~~~ 59 (352)
.+.+++++|++|+||||++..++..+...
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 36789999999999999999998877555
No 342
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=97.01 E-value=0.002 Score=61.91 Aligned_cols=61 Identities=21% Similarity=0.347 Sum_probs=45.9
Q ss_pred CCCCCCcCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCC-CcceeEee
Q 045677 3 SELEIPKELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHE-FDGSSFLA 67 (352)
Q Consensus 3 ~~~~~~~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~-~~~~~~~~ 67 (352)
-|...-+.++|.+..++.+...+..+ +.+.++|++|+|||++++.++..+... +....++.
T Consensus 12 ~~~~~~~~viG~~~a~~~l~~a~~~~----~~~ll~G~pG~GKT~la~~la~~l~~~~~~~~~~~~ 73 (608)
T TIGR00764 12 VPERLIDQVIGQEEAVEIIKKAAKQK----RNVLLIGEPGVGKSMLAKAMAELLPDEELEDILVYP 73 (608)
T ss_pred cchhhHhhccCHHHHHHHHHHHHHcC----CCEEEECCCCCCHHHHHHHHHHHcCchhheeEEEEe
Confidence 34455677899999998888877743 367799999999999999999887554 23344444
No 343
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=97.00 E-value=0.0011 Score=58.94 Aligned_cols=49 Identities=31% Similarity=0.387 Sum_probs=40.1
Q ss_pred CcCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCC
Q 045677 8 PKELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEF 60 (352)
Q Consensus 8 ~~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~ 60 (352)
...++|++..+..+...+..+ +.+++.|++|+|||+||+.++..+...|
T Consensus 23 ~~~~~g~~~~~~~~l~a~~~~----~~vll~G~PG~gKT~la~~lA~~l~~~~ 71 (329)
T COG0714 23 EKVVVGDEEVIELALLALLAG----GHVLLEGPPGVGKTLLARALARALGLPF 71 (329)
T ss_pred CCeeeccHHHHHHHHHHHHcC----CCEEEECCCCccHHHHHHHHHHHhCCCe
Confidence 344899998888877777643 5688999999999999999999988554
No 344
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.98 E-value=0.00074 Score=55.71 Aligned_cols=31 Identities=16% Similarity=0.205 Sum_probs=24.6
Q ss_pred HhcCCCCeEEEEEEcCCCCcHHHHHHHHHHH
Q 045677 25 MCTGSNDVRTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 25 l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
+-.+....++++|+|++|+|||||+..+...
T Consensus 6 ~~~~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 6 LFNKPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred ccCCCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 3334456788999999999999999988643
No 345
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.98 E-value=0.0083 Score=53.54 Aligned_cols=26 Identities=31% Similarity=0.323 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
.+++.++||.|+||||-..+++.+..
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~ 228 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYV 228 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHH
Confidence 69999999999999977777666643
No 346
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=96.98 E-value=0.003 Score=56.54 Aligned_cols=108 Identities=17% Similarity=0.118 Sum_probs=59.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcCCCc---ceeEeeeccccccCCCcHHHHHHHHHHHHhcccCCCccchhhhHHHH
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLMSHEFD---GSSFLADVRERCDKEGSVISLQKQLLSDLLMLADNSIRNVYDGVNMI 108 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (352)
...|+|+|+.|+||||+++.++..+..... ..+...+.-.. ...... ... ...... ............+
T Consensus 134 ~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~-----~~~~~~-~~~-~~v~Q~-~v~~~~~~~~~~l 205 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEF-----VYDEIE-TIS-ASVCQS-EIPRHLNNFAAGV 205 (358)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceE-----eccccc-ccc-ceeeee-eccccccCHHHHH
Confidence 478999999999999999999887644322 12222211110 000000 000 000000 0111223455666
Q ss_pred HhhhCCceEEEEEeCCCChhhhhhhhCCCCCCCCCceEEEEeC
Q 045677 109 GSRLRHKKVLLLIDDVADVEQLRGLFGKRDWFGLGSMIIITTR 151 (352)
Q Consensus 109 ~~~l~~~~~llvlDd~~~~~~~~~l~~~~~~~~~~~~iiitsr 151 (352)
+..+...|-.+++.++.+.+.....+.... -++.++||=
T Consensus 206 ~~aLR~~Pd~i~vGEiRd~et~~~al~aa~----tGh~v~tTl 244 (358)
T TIGR02524 206 RNALRRKPHAILVGEARDAETISAALEAAL----TGHPVYTTL 244 (358)
T ss_pred HHHhccCCCEEeeeeeCCHHHHHHHHHHHH----cCCcEEEee
Confidence 778888999999999988877765544422 224466664
No 347
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.97 E-value=0.0024 Score=57.29 Aligned_cols=95 Identities=23% Similarity=0.200 Sum_probs=54.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcCCC-cceeE-eeeccccccCCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHHh
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLMSHEF-DGSSF-LADVRERCDKEGSVISLQKQLLSDLLMLADNSIRNVYDGVNMIGS 110 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (352)
..++|+|+.|+||||+++.++..+.... ...++ +.+.-..... .. . .+.. .... .-..+.......++.
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~-~~-~----~~~~--~~q~-evg~~~~~~~~~l~~ 220 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILG-SP-D----DLLP--PAQS-QIGRDVDSFANGIRL 220 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccC-CC-c----eeec--cccc-ccCCCccCHHHHHHH
Confidence 5788999999999999999988764332 22222 2211110000 00 0 0000 0000 001122345667778
Q ss_pred hhCCceEEEEEeCCCChhhhhhhhCC
Q 045677 111 RLRHKKVLLLIDDVADVEQLRGLFGK 136 (352)
Q Consensus 111 ~l~~~~~llvlDd~~~~~~~~~l~~~ 136 (352)
.++..|=+|+++++.+.+..+..+..
T Consensus 221 aLR~~PD~I~vGEiRd~et~~~al~a 246 (372)
T TIGR02525 221 ALRRAPKIIGVGEIRDLETFQAAVLA 246 (372)
T ss_pred hhccCCCEEeeCCCCCHHHHHHHHHH
Confidence 88889999999999888877755444
No 348
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=96.97 E-value=0.00095 Score=53.99 Aligned_cols=35 Identities=29% Similarity=0.343 Sum_probs=29.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEe
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFL 66 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~ 66 (352)
.++++|+||+|+|||+|+..++......|...+..
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~ 36 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSH 36 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceee
Confidence 37889999999999999999999988777544444
No 349
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.96 E-value=0.0023 Score=49.89 Aligned_cols=20 Identities=35% Similarity=0.348 Sum_probs=18.4
Q ss_pred EEcCCCCcHHHHHHHHHHHh
Q 045677 37 IWGMGGLGKTTLARVVYDLM 56 (352)
Q Consensus 37 I~G~~GiGKT~La~~~~~~~ 56 (352)
|.|+||+||||++..++.+.
T Consensus 1 i~G~PgsGK~t~~~~la~~~ 20 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY 20 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhc
Confidence 68999999999999999875
No 350
>PRK04040 adenylate kinase; Provisional
Probab=96.96 E-value=0.00098 Score=54.01 Aligned_cols=25 Identities=24% Similarity=0.464 Sum_probs=23.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
.+++|+|.+|+||||+++.+.+.+.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 6789999999999999999998875
No 351
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.96 E-value=0.002 Score=47.66 Aligned_cols=48 Identities=19% Similarity=0.319 Sum_probs=33.0
Q ss_pred cCcccccHHHHHH----HHHHhcCCCC-eEEEEEEcCCCCcHHHHHHHHHHHh
Q 045677 9 KELVGMESRLEKL----KFLMCTGSND-VRTIGIWGMGGLGKTTLARVVYDLM 56 (352)
Q Consensus 9 ~~~vGR~~~l~~l----~~~l~~~~~~-~~~v~I~G~~GiGKT~La~~~~~~~ 56 (352)
..++|..-..+.+ ...+.+..++ +-++.++|++|+|||.+++.+++.+
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 4567766555444 4455444444 3445689999999999999999874
No 352
>PTZ00035 Rad51 protein; Provisional
Probab=96.96 E-value=0.0043 Score=55.10 Aligned_cols=38 Identities=21% Similarity=0.211 Sum_probs=27.8
Q ss_pred HHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 20 KLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 20 ~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
.|-+.|..+=....++.|+|++|+|||+|+.+++-..+
T Consensus 106 ~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~q 143 (337)
T PTZ00035 106 QLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQ 143 (337)
T ss_pred HHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhc
Confidence 44444543334568899999999999999998876543
No 353
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.94 E-value=0.00091 Score=53.67 Aligned_cols=26 Identities=27% Similarity=0.450 Sum_probs=23.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcC
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLMSH 58 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~~~ 58 (352)
+++++.|++|+||||+++.+......
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~ 28 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAE 28 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 68999999999999999999887543
No 354
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.94 E-value=0.0024 Score=56.61 Aligned_cols=34 Identities=24% Similarity=0.152 Sum_probs=25.1
Q ss_pred HHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHH
Q 045677 22 KFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 22 ~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
-+.|..+=....++-|+|++|+|||+|+.+++-.
T Consensus 116 D~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~ 149 (344)
T PLN03187 116 DELLGGGIETRCITEAFGEFRSGKTQLAHTLCVT 149 (344)
T ss_pred HhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHH
Confidence 3334432234678889999999999999998754
No 355
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.94 E-value=0.0011 Score=52.44 Aligned_cols=25 Identities=28% Similarity=0.329 Sum_probs=22.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHh
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLM 56 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~ 56 (352)
..+++|+||+|+|||||++.+..+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4789999999999999999999776
No 356
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.94 E-value=0.00085 Score=54.47 Aligned_cols=25 Identities=28% Similarity=0.262 Sum_probs=22.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHh
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLM 56 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~ 56 (352)
.++++|.|++|+||||+++.++..+
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4789999999999999999999765
No 357
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=96.93 E-value=0.0054 Score=50.09 Aligned_cols=26 Identities=27% Similarity=0.268 Sum_probs=22.2
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHh
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLM 56 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~ 56 (352)
...++.|.|+.|+|||||++.++-..
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34789999999999999999987654
No 358
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.93 E-value=0.00093 Score=54.50 Aligned_cols=26 Identities=35% Similarity=0.268 Sum_probs=22.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcC
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLMSH 58 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~~~ 58 (352)
.++.|.|++|+|||+++.+++..+..
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~ 58 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALAT 58 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 58899999999999999999887643
No 359
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=96.93 E-value=0.0023 Score=60.93 Aligned_cols=52 Identities=17% Similarity=0.169 Sum_probs=43.6
Q ss_pred CCcCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcC
Q 045677 7 IPKELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSH 58 (352)
Q Consensus 7 ~~~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~ 58 (352)
.++..+.|..-.+.|.++...+.....+++|+|.+|+||||+++.++..+..
T Consensus 367 ~pP~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 367 EIPEWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred CCChhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 4667788888888888887776666678999999999999999999998865
No 360
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=96.93 E-value=0.0046 Score=54.04 Aligned_cols=101 Identities=21% Similarity=0.161 Sum_probs=53.9
Q ss_pred HHHHHHh-cCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHHHHHHHHhcccCCCc
Q 045677 20 KLKFLMC-TGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQKQLLSDLLMLADNSI 98 (352)
Q Consensus 20 ~l~~~l~-~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 98 (352)
.|-..|. .+-+..+++-|+|++|+|||||+..+....++.....+|+. . ...+-...++.+--.+...--..+
T Consensus 40 ~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia~~q~~g~~~a~ID-~-----e~~ld~~~a~~lGvdl~rllv~~P 113 (322)
T PF00154_consen 40 ALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKQGGICAFID-A-----EHALDPEYAESLGVDLDRLLVVQP 113 (322)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEE-S-----SS---HHHHHHTT--GGGEEEEE-
T ss_pred ccchhhccCccccCceEEEeCCCCCchhhhHHHHHHhhhcccceeEEec-C-----cccchhhHHHhcCccccceEEecC
Confidence 3444444 22234578999999999999999999888766655566664 1 111112222232222111111123
Q ss_pred cchhhhHHHHHhhhC-CceEEEEEeCCCC
Q 045677 99 RNVYDGVNMIGSRLR-HKKVLLLIDDVAD 126 (352)
Q Consensus 99 ~~~~~~~~~~~~~l~-~~~~llvlDd~~~ 126 (352)
+..++..+.....++ +.--++|+|-+..
T Consensus 114 ~~~E~al~~~e~lirsg~~~lVVvDSv~a 142 (322)
T PF00154_consen 114 DTGEQALWIAEQLIRSGAVDLVVVDSVAA 142 (322)
T ss_dssp SSHHHHHHHHHHHHHTTSESEEEEE-CTT
T ss_pred CcHHHHHHHHHHHhhcccccEEEEecCcc
Confidence 445555565555554 3445889999844
No 361
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.92 E-value=0.0087 Score=52.30 Aligned_cols=88 Identities=22% Similarity=0.256 Sum_probs=51.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcCC--CcceeEeeeccccccCCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHHh
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLMSHE--FDGSSFLADVRERCDKEGSVISLQKQLLSDLLMLADNSIRNVYDGVNMIGS 110 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (352)
..++|.|+.|+||||+++.++..+... ....+.+.+.......... ....... .........+..
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~----------~v~~~~~---~~~~~~~~~l~~ 199 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPN----------VVQLRTS---DDAISMTRLLKA 199 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCC----------EEEEEec---CCCCCHHHHHHH
Confidence 567899999999999999999887543 2223333222111100000 0000000 111145567777
Q ss_pred hhCCceEEEEEeCCCChhhhhhh
Q 045677 111 RLRHKKVLLLIDDVADVEQLRGL 133 (352)
Q Consensus 111 ~l~~~~~llvlDd~~~~~~~~~l 133 (352)
.++..+=.||+.++.+.+.+..+
T Consensus 200 aLR~~pD~iivGEiR~~ea~~~l 222 (299)
T TIGR02782 200 TLRLRPDRIIVGEVRGGEALDLL 222 (299)
T ss_pred HhcCCCCEEEEeccCCHHHHHHH
Confidence 88888889999999877766543
No 362
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.92 E-value=0.0009 Score=53.56 Aligned_cols=26 Identities=27% Similarity=0.422 Sum_probs=23.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
...++|+|++|+||||++..++..+.
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 36799999999999999999998874
No 363
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.92 E-value=0.0011 Score=54.79 Aligned_cols=28 Identities=43% Similarity=0.585 Sum_probs=24.3
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 30 NDVRTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 30 ~~~~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
+...++.|.|++|+|||||++.+...+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3458899999999999999999987765
No 364
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.0046 Score=54.77 Aligned_cols=31 Identities=29% Similarity=0.411 Sum_probs=25.9
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHhcCCC
Q 045677 30 NDVRTIGIWGMGGLGKTTLARVVYDLMSHEF 60 (352)
Q Consensus 30 ~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~ 60 (352)
...+-+++|||+|+|||-+|++++.+-.-+|
T Consensus 382 apfRNilfyGPPGTGKTm~ArelAr~SGlDY 412 (630)
T KOG0742|consen 382 APFRNILFYGPPGTGKTMFARELARHSGLDY 412 (630)
T ss_pred chhhheeeeCCCCCCchHHHHHHHhhcCCce
Confidence 4467899999999999999999997765554
No 365
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=96.92 E-value=0.003 Score=52.09 Aligned_cols=27 Identities=33% Similarity=0.589 Sum_probs=23.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcCC
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLMSHE 59 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~~~~ 59 (352)
+-+.|.|++|+|||+|+.+++......
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~~d 42 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQDAD 42 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCTTT
T ss_pred CEEEEEcCcccccchhhHHHHhccccc
Confidence 567899999999999999999887544
No 366
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=96.92 E-value=0.015 Score=54.51 Aligned_cols=49 Identities=24% Similarity=0.232 Sum_probs=37.5
Q ss_pred cCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 9 KELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 9 ~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
..++|....+.++.+.+.........++|.|++|+||+++|+.+.....
T Consensus 134 ~~lig~s~~~~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~ih~~~~ 182 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHSP 182 (463)
T ss_pred cceeecCHHHHHHHHHHHHHhCcCCeEEEECCCCCCHHHHHHHHHHhCC
Confidence 3588888888888777665333445688999999999999988876544
No 367
>PRK03839 putative kinase; Provisional
Probab=96.91 E-value=0.00091 Score=53.93 Aligned_cols=25 Identities=32% Similarity=0.542 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcC
Q 045677 34 TIGIWGMGGLGKTTLARVVYDLMSH 58 (352)
Q Consensus 34 ~v~I~G~~GiGKT~La~~~~~~~~~ 58 (352)
.|+|.|++|+||||+++.+++.+.-
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~ 26 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGY 26 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4789999999999999999988653
No 368
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.045 Score=45.72 Aligned_cols=48 Identities=21% Similarity=0.380 Sum_probs=34.5
Q ss_pred CcccccHHHHHHHHHHhc-----------CCCCeEEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 10 ELVGMESRLEKLKFLMCT-----------GSNDVRTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 10 ~~vGR~~~l~~l~~~l~~-----------~~~~~~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
..=|-+..+++|.+.+-- +-..++-|+.|||+|+|||-+|+..+.+..
T Consensus 172 DiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~ 230 (424)
T KOG0652|consen 172 DIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTN 230 (424)
T ss_pred ccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhcc
Confidence 345777888888765431 112356789999999999999998776543
No 369
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.014 Score=49.54 Aligned_cols=49 Identities=29% Similarity=0.412 Sum_probs=36.5
Q ss_pred cccccHHHHHHHHHHhc-----------CCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCC
Q 045677 11 LVGMESRLEKLKFLMCT-----------GSNDVRTIGIWGMGGLGKTTLARVVYDLMSHE 59 (352)
Q Consensus 11 ~vGR~~~l~~l~~~l~~-----------~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~ 59 (352)
.=|-++.++++.+-..- +-..++-|.+||++|+|||-||+.+++.....
T Consensus 187 iGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSAT 246 (440)
T KOG0726|consen 187 IGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSAT 246 (440)
T ss_pred cccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchh
Confidence 45678888888876552 11345678899999999999999999765443
No 370
>PRK05973 replicative DNA helicase; Provisional
Probab=96.89 E-value=0.0019 Score=54.02 Aligned_cols=37 Identities=16% Similarity=0.004 Sum_probs=28.6
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEee
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLA 67 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~ 67 (352)
+..+++|.|++|+|||+|+.+++.....+...++|+.
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfS 99 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFT 99 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 4578999999999999999999887644444455554
No 371
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.89 E-value=0.0063 Score=49.77 Aligned_cols=101 Identities=19% Similarity=0.211 Sum_probs=53.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhcCC----CcceeEeeeccccccCCCcHHHHHHHHHHHHhcccCCC-------ccchhh
Q 045677 35 IGIWGMGGLGKTTLARVVYDLMSHE----FDGSSFLADVRERCDKEGSVISLQKQLLSDLLMLADNS-------IRNVYD 103 (352)
Q Consensus 35 v~I~G~~GiGKT~La~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-------~~~~~~ 103 (352)
.+|.||+|+|||||.+.+++-+... ....+-+.+-++ +++..+.+.+.-. .+....
T Consensus 140 tLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDers-------------EIag~~~gvpq~~~g~R~dVld~cpk 206 (308)
T COG3854 140 TLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERS-------------EIAGCLNGVPQHGRGRRMDVLDPCPK 206 (308)
T ss_pred eEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccc-------------hhhccccCCchhhhhhhhhhcccchH
Confidence 7799999999999999999876544 222232322211 1111100100000 011111
Q ss_pred hHHHHHhhhCCceEEEEEeCCCChhhhhhhhCCCCCCCCCceEEEEeC
Q 045677 104 GVNMIGSRLRHKKVLLLIDDVADVEQLRGLFGKRDWFGLGSMIIITTR 151 (352)
Q Consensus 104 ~~~~~~~~l~~~~~llvlDd~~~~~~~~~l~~~~~~~~~~~~iiitsr 151 (352)
..-++...-+..|=++|+|++-..++...++..+ ..|.++|.|.-
T Consensus 207 ~~gmmmaIrsm~PEViIvDEIGt~~d~~A~~ta~---~~GVkli~TaH 251 (308)
T COG3854 207 AEGMMMAIRSMSPEVIIVDEIGTEEDALAILTAL---HAGVKLITTAH 251 (308)
T ss_pred HHHHHHHHHhcCCcEEEEeccccHHHHHHHHHHH---hcCcEEEEeec
Confidence 1122222224567899999997666655555543 35777776654
No 372
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.89 E-value=0.0032 Score=51.62 Aligned_cols=37 Identities=19% Similarity=0.207 Sum_probs=28.1
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEe
Q 045677 30 NDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFL 66 (352)
Q Consensus 30 ~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~ 66 (352)
..+.+++|+|.+|+|||||++.+...+.......+++
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~l 58 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLL 58 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 3457899999999999999999998875443333444
No 373
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.89 E-value=0.011 Score=54.26 Aligned_cols=26 Identities=23% Similarity=0.245 Sum_probs=22.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
.++++++|++|+||||++..++..+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~ 246 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYA 246 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46889999999999999999887765
No 374
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=96.88 E-value=0.0015 Score=59.44 Aligned_cols=52 Identities=23% Similarity=0.303 Sum_probs=37.9
Q ss_pred CcCcccccHHHHHHHHHHhc-------CC-------CCeEEEEEEcCCCCcHHHHHHHHHHHhcCC
Q 045677 8 PKELVGMESRLEKLKFLMCT-------GS-------NDVRTIGIWGMGGLGKTTLARVVYDLMSHE 59 (352)
Q Consensus 8 ~~~~vGR~~~l~~l~~~l~~-------~~-------~~~~~v~I~G~~GiGKT~La~~~~~~~~~~ 59 (352)
....||.+...+.|...+.. .. -....++++||+|+|||++|+.++..+...
T Consensus 70 ~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~p 135 (412)
T PRK05342 70 DQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVP 135 (412)
T ss_pred hhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 34679999999888665521 00 013568999999999999999999776443
No 375
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.88 E-value=0.0015 Score=50.12 Aligned_cols=28 Identities=25% Similarity=0.279 Sum_probs=24.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcCCC
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLMSHEF 60 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~~~~~ 60 (352)
++|.|+|+.|+|||||+..+++.+.++.
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g 28 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRG 28 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcC
Confidence 4789999999999999999999986553
No 376
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.88 E-value=0.0038 Score=52.41 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHH
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYD 54 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~ 54 (352)
..++.|.||.|.|||||++.+.-
T Consensus 30 G~~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 30 GEITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 37899999999999999999886
No 377
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.87 E-value=0.014 Score=47.22 Aligned_cols=48 Identities=19% Similarity=0.071 Sum_probs=34.4
Q ss_pred HHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEee
Q 045677 20 KLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLA 67 (352)
Q Consensus 20 ~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~ 67 (352)
+|...|..+=+-..++.|-|+-|+|||.|.+++++-.-.....+.+++
T Consensus 16 elDkrLGGGiP~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvs 63 (235)
T COG2874 16 ELDKRLGGGIPVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVS 63 (235)
T ss_pred HHHhhccCCCccCeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEE
Confidence 344445433344688999999999999999999998665544455543
No 378
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.86 E-value=0.0046 Score=50.41 Aligned_cols=24 Identities=33% Similarity=0.356 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHH
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
..++.|.|+.|+|||||++.++-.
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 33 GTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 478999999999999999998853
No 379
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.86 E-value=0.0088 Score=50.69 Aligned_cols=37 Identities=19% Similarity=0.131 Sum_probs=28.4
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcCC-CcceeEee
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMSHE-FDGSSFLA 67 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~~~-~~~~~~~~ 67 (352)
...+++|.|++|+|||+|+.+++...... .....|++
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s 49 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFS 49 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEe
Confidence 45799999999999999999998876444 34445554
No 380
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.86 E-value=0.01 Score=50.58 Aligned_cols=107 Identities=19% Similarity=0.195 Sum_probs=68.2
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHHh
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQKQLLSDLLMLADNSIRNVYDGVNMIGS 110 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (352)
...+|+|+||.|+||||-.......+.++....+.-. -++...+..-.+.++.+ -.-..+...+...++.
T Consensus 124 ~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTI-----EDPIE~vh~skkslI~Q-----REvG~dT~sF~~aLra 193 (353)
T COG2805 124 PRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTI-----EDPIEYVHESKKSLINQ-----REVGRDTLSFANALRA 193 (353)
T ss_pred CCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEe-----cCchHhhhcchHhhhhH-----HHhcccHHHHHHHHHH
Confidence 4479999999999999888888888766655444432 11111111112222222 1112345667788899
Q ss_pred hhCCceEEEEEeCCCChhhhhhhhCCCCCCCCCceEEEEeC
Q 045677 111 RLRHKKVLLLIDDVADVEQLRGLFGKRDWFGLGSMIIITTR 151 (352)
Q Consensus 111 ~l~~~~~llvlDd~~~~~~~~~l~~~~~~~~~~~~iiitsr 151 (352)
.+++.|=+|++-+..+.+.+..-+..- .-+++|+.|-
T Consensus 194 ALReDPDVIlvGEmRD~ETi~~ALtAA----ETGHLV~~TL 230 (353)
T COG2805 194 ALREDPDVILVGEMRDLETIRLALTAA----ETGHLVFGTL 230 (353)
T ss_pred HhhcCCCEEEEeccccHHHHHHHHHHH----hcCCEEEEec
Confidence 999999999999999888876655542 2346666654
No 381
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=96.85 E-value=0.013 Score=57.86 Aligned_cols=128 Identities=16% Similarity=0.042 Sum_probs=68.3
Q ss_pred HHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHHHHHHHHhcccC
Q 045677 16 SRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQKQLLSDLLMLAD 95 (352)
Q Consensus 16 ~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 95 (352)
....+|.+.+.. .++++|.|++|+||||-+-+++.+........+-+...+. .. ..++...+...+....+
T Consensus 53 ~~~~~i~~ai~~----~~vvii~getGsGKTTqlP~~lle~g~~~~g~I~~tQPRR----lA-ArsvA~RvAeel~~~~G 123 (845)
T COG1643 53 AVRDEILKAIEQ----NQVVIIVGETGSGKTTQLPQFLLEEGLGIAGKIGCTQPRR----LA-ARSVAERVAEELGEKLG 123 (845)
T ss_pred HHHHHHHHHHHh----CCEEEEeCCCCCChHHHHHHHHHhhhcccCCeEEecCchH----HH-HHHHHHHHHHHhCCCcC
Confidence 345666666663 3789999999999999998888765433333333332211 11 24555666666544322
Q ss_pred CC-------------c-----cchhhhHHHHH-hhhCCceEEEEEeCCCChhh----hhhhhCC-CCCCCCCceEEEEeC
Q 045677 96 NS-------------I-----RNVYDGVNMIG-SRLRHKKVLLLIDDVADVEQ----LRGLFGK-RDWFGLGSMIIITTR 151 (352)
Q Consensus 96 ~~-------------~-----~~~~~~~~~~~-~~l~~~~~llvlDd~~~~~~----~~~l~~~-~~~~~~~~~iiitsr 151 (352)
.. . .....+...+. +..-.+--++|||++++..- +-.++.. +.......+|||+|=
T Consensus 124 ~~VGY~iRfe~~~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIimSA 203 (845)
T COG1643 124 ETVGYSIRFESKVSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIMSA 203 (845)
T ss_pred ceeeEEEEeeccCCCCceeEEeccHHHHHHHhhCcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEEEec
Confidence 11 0 11222223232 33334556999999975432 1111111 122233488999875
Q ss_pred c
Q 045677 152 D 152 (352)
Q Consensus 152 ~ 152 (352)
.
T Consensus 204 T 204 (845)
T COG1643 204 T 204 (845)
T ss_pred c
Confidence 3
No 382
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.85 E-value=0.0055 Score=57.57 Aligned_cols=115 Identities=17% Similarity=0.155 Sum_probs=60.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHHHHHHHHhcccCCC---------------
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQKQLLSDLLMLADNS--------------- 97 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--------------- 97 (352)
++|+|+|+.|+||||-+.++...-. |....-+.+. .+..... .++.+.+...+...-...
T Consensus 372 ~vvvivgETGSGKTTQl~QyL~edG--Y~~~GmIGcT--QPRRvAA-iSVAkrVa~EM~~~lG~~VGYsIRFEdvT~~~T 446 (1042)
T KOG0924|consen 372 QVVVIVGETGSGKTTQLAQYLYEDG--YADNGMIGCT--QPRRVAA-ISVAKRVAEEMGVTLGDTVGYSIRFEDVTSEDT 446 (1042)
T ss_pred cEEEEEecCCCCchhhhHHHHHhcc--cccCCeeeec--CchHHHH-HHHHHHHHHHhCCccccccceEEEeeecCCCce
Confidence 7899999999999998877765532 2222222110 1111222 566666666653322211
Q ss_pred ----ccchhhhHHHHHhhhCCceEEEEEeCCCChh----hhhhhhCCCCCCCCCceEEEEeCc
Q 045677 98 ----IRNVYDGVNMIGSRLRHKKVLLLIDDVADVE----QLRGLFGKRDWFGLGSMIIITTRD 152 (352)
Q Consensus 98 ----~~~~~~~~~~~~~~l~~~~~llvlDd~~~~~----~~~~l~~~~~~~~~~~~iiitsr~ 152 (352)
..+.-.+.+.+.+..-.+--+||+|+.++.. -+--++..........++||||-.
T Consensus 447 ~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~larRrdlKliVtSAT 509 (1042)
T KOG0924|consen 447 KIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLIVTSAT 509 (1042)
T ss_pred eEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhccceEEEeecc
Confidence 0122223333444444567799999996432 111112111122457789998864
No 383
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.84 E-value=0.00092 Score=51.19 Aligned_cols=26 Identities=27% Similarity=0.422 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcCC
Q 045677 34 TIGIWGMGGLGKTTLARVVYDLMSHE 59 (352)
Q Consensus 34 ~v~I~G~~GiGKT~La~~~~~~~~~~ 59 (352)
+++|+|++|+|||||++.+.......
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~ 26 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPN 26 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCcc
Confidence 36899999999999999999775443
No 384
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=96.83 E-value=0.007 Score=57.85 Aligned_cols=116 Identities=13% Similarity=0.100 Sum_probs=65.4
Q ss_pred HHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHHHHHHHHhcccC
Q 045677 16 SRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQKQLLSDLLMLAD 95 (352)
Q Consensus 16 ~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 95 (352)
..++.+.+.+.. ...+|+|+|+.|+||||++..+...+...-...+-+.+. .... +..+ .+ ..
T Consensus 303 ~~~~~l~~~~~~---~~Glilv~G~tGSGKTTtl~a~l~~~~~~~~~i~tiEdp-----vE~~----~~~~-~q----~~ 365 (564)
T TIGR02538 303 DQKALFLEAIHK---PQGMVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDP-----VEIN----LPGI-NQ----VN 365 (564)
T ss_pred HHHHHHHHHHHh---cCCeEEEECCCCCCHHHHHHHHHHhhCCCCceEEEecCC-----ceec----CCCc-eE----EE
Confidence 344556655552 337899999999999999988877764332122222111 0000 0000 00 00
Q ss_pred CCccchhhhHHHHHhhhCCceEEEEEeCCCChhhhhhhhCCCCCCCCCceEEEEeCc
Q 045677 96 NSIRNVYDGVNMIGSRLRHKKVLLLIDDVADVEQLRGLFGKRDWFGLGSMIIITTRD 152 (352)
Q Consensus 96 ~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~~~~~~l~~~~~~~~~~~~iiitsr~ 152 (352)
............++..+...|=+|++.++.+.+.....+.... -++.++||-.
T Consensus 366 v~~~~g~~~~~~l~~~LR~dPDvI~vGEiRd~eta~~a~~aa~----tGHlv~tTlH 418 (564)
T TIGR02538 366 VNPKIGLTFAAALRSFLRQDPDIIMVGEIRDLETAEIAIKAAQ----TGHLVLSTLH 418 (564)
T ss_pred eccccCCCHHHHHHHHhccCCCEEEeCCCCCHHHHHHHHHHHH----cCCcEEEEec
Confidence 0111123456777888889999999999988877654444321 2355666643
No 385
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.83 E-value=0.0088 Score=59.08 Aligned_cols=27 Identities=19% Similarity=0.281 Sum_probs=23.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcCC
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLMSHE 59 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~~~~ 59 (352)
+++.|.|++|+||||++..+...+...
T Consensus 369 ~~~il~G~aGTGKTtll~~i~~~~~~~ 395 (744)
T TIGR02768 369 DIAVVVGRAGTGKSTMLKAAREAWEAA 395 (744)
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHHhC
Confidence 688899999999999999988776554
No 386
>PRK12678 transcription termination factor Rho; Provisional
Probab=96.83 E-value=0.0036 Score=58.36 Aligned_cols=38 Identities=16% Similarity=0.040 Sum_probs=27.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcCC-CcceeEeeec
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLMSHE-FDGSSFLADV 69 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~~~~-~~~~~~~~~~ 69 (352)
.+-.+|+|++|+|||+|+..+++.+... -...+++..+
T Consensus 416 GQR~LIvgpp~aGKTtLL~~IAn~i~~n~~~~~~ivvLI 454 (672)
T PRK12678 416 GQRGLIVSPPKAGKTTILQNIANAITTNNPECHLMVVLV 454 (672)
T ss_pred CCEeEEeCCCCCCHHHHHHHHHHHHhhcCCCeEEEEEEE
Confidence 4667899999999999999999876443 3333344433
No 387
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=96.82 E-value=0.037 Score=46.78 Aligned_cols=56 Identities=18% Similarity=0.122 Sum_probs=38.6
Q ss_pred ceEEEEEeCCC--ChhhhhhhhCCCCCCCCCceEEEEeCch-hHhhhcC-cccEEecCCC
Q 045677 115 KKVLLLIDDVA--DVEQLRGLFGKRDWFGLGSMIIITTRDE-HLLKLHR-VEEVYKLEAL 170 (352)
Q Consensus 115 ~~~llvlDd~~--~~~~~~~l~~~~~~~~~~~~iiitsr~~-~~~~~~~-~~~~~~l~~l 170 (352)
..=++|||+++ .......++..+.+.+.++.+|++|.+. .+.+... ....+.+.+.
T Consensus 88 ~~KV~II~~ae~m~~~AaNaLLK~LEEPp~~t~fiLit~~~~~lLpTI~SRCq~~~~~~~ 147 (261)
T PRK05818 88 GKKIYIIYGIEKLNKQSANSLLKLIEEPPKNTYGIFTTRNENNILNTILSRCVQYVVLSK 147 (261)
T ss_pred CCEEEEeccHhhhCHHHHHHHHHhhcCCCCCeEEEEEECChHhCchHhhhheeeeecCCh
Confidence 45688999997 4567889998888878888877777654 4444433 3355666665
No 388
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=96.82 E-value=0.0043 Score=51.95 Aligned_cols=92 Identities=16% Similarity=0.216 Sum_probs=50.2
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeecccccc--C---CCcHHHHH--HHHHHHHhcccCCCcc----
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCD--K---EGSVISLQ--KQLLSDLLMLADNSIR---- 99 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~l~--~~~~~~~~~~~~~~~~---- 99 (352)
++.+++++|++|+||||+.+.+...+..+... .++.++...-. + .-.+++.+ +.+..+...+++..+.
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~p-pYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsLN 96 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHAKKTP-PYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSLN 96 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhhccCC-CeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhHH
Confidence 45678899999999999999999887665432 33334432211 1 11112222 2455666555555542
Q ss_pred ----chhhhHHHHHhhhCCceEEEEEeCC
Q 045677 100 ----NVYDGVNMIGSRLRHKKVLLLIDDV 124 (352)
Q Consensus 100 ----~~~~~~~~~~~~l~~~~~llvlDd~ 124 (352)
...+.+..+.+......+ +++|--
T Consensus 97 LF~tk~dqv~~~iek~~~~~~~-~liDTP 124 (366)
T KOG1532|consen 97 LFATKFDQVIELIEKRAEEFDY-VLIDTP 124 (366)
T ss_pred HHHHHHHHHHHHHHHhhcccCE-EEEcCC
Confidence 334444555444444334 445553
No 389
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=96.81 E-value=0.0027 Score=53.68 Aligned_cols=58 Identities=24% Similarity=0.282 Sum_probs=44.5
Q ss_pred CCCCCcCcccccHHHHH---HHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCc
Q 045677 4 ELEIPKELVGMESRLEK---LKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFD 61 (352)
Q Consensus 4 ~~~~~~~~vGR~~~l~~---l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~ 61 (352)
+...+..|||.....+. +.+++..+.=..+.+++.||+|+|||+||..+.+.+....+
T Consensus 33 ~~~~~~g~vGQ~~AReAagiivdlik~KkmaGravLlaGppgtGKTAlAlaisqELG~kvP 93 (456)
T KOG1942|consen 33 AVEVAAGFVGQENAREAAGIIVDLIKSKKMAGRAVLLAGPPGTGKTALALAISQELGPKVP 93 (456)
T ss_pred eeecccccccchhhhhhhhHHHHHHHhhhccCcEEEEecCCCCchhHHHHHHHHHhCCCCC
Confidence 34556789999877653 45555554444589999999999999999999999877643
No 390
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.81 E-value=0.003 Score=53.12 Aligned_cols=48 Identities=19% Similarity=0.089 Sum_probs=32.7
Q ss_pred HHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEee
Q 045677 20 KLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLA 67 (352)
Q Consensus 20 ~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~ 67 (352)
.|-+.+..+=....++.|.|++|+|||+|+.+++..........+|+.
T Consensus 8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is 55 (229)
T TIGR03881 8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVT 55 (229)
T ss_pred hHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEE
Confidence 344444433334688999999999999999998765434444555654
No 391
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.81 E-value=0.00097 Score=51.99 Aligned_cols=23 Identities=26% Similarity=0.538 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 045677 34 TIGIWGMGGLGKTTLARVVYDLM 56 (352)
Q Consensus 34 ~v~I~G~~GiGKT~La~~~~~~~ 56 (352)
+++|+|++|+||||+++.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 37899999999999999998764
No 392
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.80 E-value=0.013 Score=53.45 Aligned_cols=29 Identities=24% Similarity=0.252 Sum_probs=25.1
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcCC
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMSHE 59 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~~~ 59 (352)
.+.+++++|++|+||||++..++..++.+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~ 127 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRK 127 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 35789999999999999999998877654
No 393
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.80 E-value=0.015 Score=47.45 Aligned_cols=22 Identities=32% Similarity=0.259 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 045677 35 IGIWGMGGLGKTTLARVVYDLM 56 (352)
Q Consensus 35 v~I~G~~GiGKT~La~~~~~~~ 56 (352)
|+|.|++|+||||++..++...
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999998774
No 394
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.80 E-value=0.0025 Score=50.51 Aligned_cols=29 Identities=24% Similarity=0.313 Sum_probs=25.4
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcCC
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMSHE 59 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~~~ 59 (352)
..+++.|+|++|+|||||+..+...+..+
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~ 33 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCAR 33 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhc
Confidence 45789999999999999999999887654
No 395
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=96.80 E-value=0.0031 Score=51.70 Aligned_cols=29 Identities=34% Similarity=0.390 Sum_probs=22.4
Q ss_pred CCCeEEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 29 SNDVRTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 29 ~~~~~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
+..+.++++.|++|+|||+++..+...+.
T Consensus 12 ~~~P~~~i~aG~~GsGKSt~~~~~~~~~~ 40 (199)
T PF06414_consen 12 QEKPTLIIIAGQPGSGKSTLARQLLEEFG 40 (199)
T ss_dssp -SS-EEEEEES-TTSTTHHHHHHHHHHT-
T ss_pred ccCCEEEEEeCCCCCCHHHHHHHhhhhcc
Confidence 35678888999999999999999988764
No 396
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.041 Score=52.85 Aligned_cols=49 Identities=22% Similarity=0.314 Sum_probs=36.7
Q ss_pred ccccHHHHHHHHHHhcCC-------CCeEEEEEEcCCCCcHHHHHHHHHHHhcCCC
Q 045677 12 VGMESRLEKLKFLMCTGS-------NDVRTIGIWGMGGLGKTTLARVVYDLMSHEF 60 (352)
Q Consensus 12 vGR~~~l~~l~~~l~~~~-------~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~ 60 (352)
.+++..+..+.+.+.... .....++++|++|+|||++++.+++.+..|+
T Consensus 404 ~~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~ 459 (953)
T KOG0736|consen 404 PGLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELGLHL 459 (953)
T ss_pred ccchHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHhCCce
Confidence 355555666666666421 2357889999999999999999999987773
No 397
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.80 E-value=0.0037 Score=55.14 Aligned_cols=41 Identities=22% Similarity=0.314 Sum_probs=31.0
Q ss_pred HHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCC
Q 045677 19 EKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHE 59 (352)
Q Consensus 19 ~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~ 59 (352)
..+.+.+....+...+|.|.|++|+|||||+..+...+...
T Consensus 43 ~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~ 83 (332)
T PRK09435 43 QELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLIEQ 83 (332)
T ss_pred HHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 34444444334566889999999999999999998887654
No 398
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.79 E-value=0.011 Score=48.53 Aligned_cols=27 Identities=19% Similarity=0.215 Sum_probs=22.6
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
...++.|.|+.|+|||||++.+.-...
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 32 PGEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred CCcEEEEECCCCCCHHHHHHHhcccCC
Confidence 347899999999999999999876543
No 399
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.79 E-value=0.0036 Score=60.95 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHH
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYD 54 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~ 54 (352)
...|.|+|.+|+|||||++.+..
T Consensus 499 Ge~vaIvG~SGsGKSTL~KLL~g 521 (709)
T COG2274 499 GEKVAIVGRSGSGKSTLLKLLLG 521 (709)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46799999999999999998765
No 400
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=96.78 E-value=0.0022 Score=63.24 Aligned_cols=24 Identities=29% Similarity=0.227 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHH
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
.+.+.|+||.|.|||||.+.+.-.
T Consensus 322 ~~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 322 KRVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred ceEEEEECCCCCCchHHHHHHHHH
Confidence 478999999999999999988754
No 401
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=96.78 E-value=0.015 Score=49.75 Aligned_cols=35 Identities=20% Similarity=0.230 Sum_probs=25.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHH-hcCCCcceeEe
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDL-MSHEFDGSSFL 66 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~-~~~~~~~~~~~ 66 (352)
+-+.+|+||.|+|||.|.+.+... +-+.-...+|+
T Consensus 87 P~I~~VYGPTG~GKSqLlRNLis~~lI~P~PETVfF 122 (369)
T PF02456_consen 87 PFIGVVYGPTGSGKSQLLRNLISCQLIQPPPETVFF 122 (369)
T ss_pred ceEEEEECCCCCCHHHHHHHhhhcCcccCCCCceEE
Confidence 455678999999999999988865 44444444444
No 402
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.78 E-value=0.0017 Score=52.26 Aligned_cols=26 Identities=35% Similarity=0.531 Sum_probs=22.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcCC
Q 045677 34 TIGIWGMGGLGKTTLARVVYDLMSHE 59 (352)
Q Consensus 34 ~v~I~G~~GiGKT~La~~~~~~~~~~ 59 (352)
+|.|.|.+|+|||||+..+...+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~ 26 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVN 26 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 47899999999999999999887543
No 403
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.78 E-value=0.0013 Score=52.97 Aligned_cols=25 Identities=32% Similarity=0.365 Sum_probs=22.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
.+++|.|++|+|||||++.++..+.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999887754
No 404
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.77 E-value=0.0083 Score=52.82 Aligned_cols=92 Identities=18% Similarity=0.164 Sum_probs=50.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHHhh
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQKQLLSDLLMLADNSIRNVYDGVNMIGSR 111 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (352)
...++|.|+.|+|||||++.+...+..+. ..+.+.+.......... .. .+...............+.+...
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~~~~~-~iv~ied~~El~~~~~~-------~~-~l~~~~~~~~~~~~~~~~~l~~~ 214 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEIPKDE-RIITIEDTREIFLPHPN-------YV-HLFYSKGGQGLAKVTPKDLLQSC 214 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccCCccc-cEEEEcCccccCCCCCC-------EE-EEEecCCCCCcCccCHHHHHHHH
Confidence 36899999999999999999887664432 22333222111110000 00 00000000111122334556667
Q ss_pred hCCceEEEEEeCCCChhhhhh
Q 045677 112 LRHKKVLLLIDDVADVEQLRG 132 (352)
Q Consensus 112 l~~~~~llvlDd~~~~~~~~~ 132 (352)
+...+-.+++|++.+.+.+..
T Consensus 215 Lr~~pd~ii~gE~r~~e~~~~ 235 (308)
T TIGR02788 215 LRMRPDRIILGELRGDEAFDF 235 (308)
T ss_pred hcCCCCeEEEeccCCHHHHHH
Confidence 778888999999987665543
No 405
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=96.77 E-value=0.0076 Score=56.54 Aligned_cols=124 Identities=15% Similarity=0.156 Sum_probs=66.8
Q ss_pred HHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHHHHHHHHhcccCCC-
Q 045677 19 EKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQKQLLSDLLMLADNS- 97 (352)
Q Consensus 19 ~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~- 97 (352)
++|...+. +.+++.|.|+.|+||||=+-+++.+..-.-...+-+. .+..... .++...++......-..+
T Consensus 57 ~~il~~ve----~nqvlIviGeTGsGKSTQipQyL~eaG~~~~g~I~~T----QPRRVAa-vslA~RVAeE~~~~lG~~V 127 (674)
T KOG0922|consen 57 DQILYAVE----DNQVLIVIGETGSGKSTQIPQYLAEAGFASSGKIACT----QPRRVAA-VSLAKRVAEEMGCQLGEEV 127 (674)
T ss_pred HHHHHHHH----HCCEEEEEcCCCCCccccHhHHHHhcccccCCcEEee----cCchHHH-HHHHHHHHHHhCCCcCcee
Confidence 45555555 2378999999999999999888876432222223332 1222222 566666666554322211
Q ss_pred ------------------ccchhhhHHHHHhhhCCceEEEEEeCCCChhh----hhhhhCCCCCCCCCceEEEEeC
Q 045677 98 ------------------IRNVYDGVNMIGSRLRHKKVLLLIDDVADVEQ----LRGLFGKRDWFGLGSMIIITTR 151 (352)
Q Consensus 98 ------------------~~~~~~~~~~~~~~l~~~~~llvlDd~~~~~~----~~~l~~~~~~~~~~~~iiitsr 151 (352)
..+.-.+-+.+.+-+-.+--+||||++++..- +--++..+.......++||+|-
T Consensus 128 GY~IRFed~ts~~TrikymTDG~LLRE~l~Dp~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R~~LklIimSA 203 (674)
T KOG0922|consen 128 GYTIRFEDSTSKDTRIKYMTDGMLLREILKDPLLSKYSVIILDEAHERSLHTDILLGLLKKILKKRPDLKLIIMSA 203 (674)
T ss_pred eeEEEecccCCCceeEEEecchHHHHHHhcCCccccccEEEEechhhhhhHHHHHHHHHHHHHhcCCCceEEEEee
Confidence 01122222333333345667999999976432 2222222322345678888775
No 406
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.77 E-value=0.0077 Score=50.08 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhc
Q 045677 35 IGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 35 v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
|+|+|++|+||||++..++..+.
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~ 25 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYG 25 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999987653
No 407
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.77 E-value=0.0085 Score=54.85 Aligned_cols=26 Identities=27% Similarity=0.276 Sum_probs=23.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
+.+++++|++|+||||++..++..+.
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 57899999999999999999988864
No 408
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.76 E-value=0.0013 Score=53.11 Aligned_cols=26 Identities=19% Similarity=0.255 Sum_probs=22.9
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHh
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLM 56 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~ 56 (352)
+.++++|+||+|+|||||++.+....
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 35889999999999999999998764
No 409
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=96.75 E-value=0.0053 Score=50.39 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHH
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
...++.|.|+.|+|||||++.++-.
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 25 KGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3478999999999999999998765
No 410
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.75 E-value=0.0079 Score=50.32 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=20.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhc
Q 045677 35 IGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 35 v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
++|.|++|+||||+++.+++...
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~g 31 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKEN 31 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 88999999999999999987753
No 411
>PRK13764 ATPase; Provisional
Probab=96.75 E-value=0.0083 Score=57.06 Aligned_cols=85 Identities=14% Similarity=0.125 Sum_probs=47.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHHhhh
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQKQLLSDLLMLADNSIRNVYDGVNMIGSRL 112 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 112 (352)
..++|+|++|+||||+++.++..+..+......+.+........ ...++ .....+..... ...+
T Consensus 258 ~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~---------~i~q~----~~~~~~~~~~~---~~lL 321 (602)
T PRK13764 258 EGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPP---------EITQY----SKLEGSMEETA---DILL 321 (602)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCC---------cceEE----eeccccHHHHH---HHHH
Confidence 45899999999999999999988764432222333222211100 00000 00001111112 2235
Q ss_pred CCceEEEEEeCCCChhhhhhh
Q 045677 113 RHKKVLLLIDDVADVEQLRGL 133 (352)
Q Consensus 113 ~~~~~llvlDd~~~~~~~~~l 133 (352)
..+|=.+++|++.+.++++.+
T Consensus 322 R~rPD~IivGEiRd~Et~~~~ 342 (602)
T PRK13764 322 LVRPDYTIYDEMRKTEDFKIF 342 (602)
T ss_pred hhCCCEEEECCCCCHHHHHHH
Confidence 667889999999887777654
No 412
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=96.75 E-value=0.0022 Score=64.17 Aligned_cols=141 Identities=18% Similarity=0.145 Sum_probs=74.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcCCC----cceeEeeeccccccCCCcHH--HHHHHHHHHHhcccCCCccchhhhHH
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLMSHEF----DGSSFLADVRERCDKEGSVI--SLQKQLLSDLLMLADNSIRNVYDGVN 106 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~ 106 (352)
.-++|+|.+|+||||++..++.....+. ...++.. +........... .+...+...+.. .........
T Consensus 223 ~~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~-l~~~~~~~~~~~q~~~~~~l~~~~~~-----~~~~~~~~~ 296 (824)
T COG5635 223 AKLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLL-LNAFALARKFEKQLSLIDYLAEELFS-----QGIAKQLIE 296 (824)
T ss_pred hheeeecCCCCCceehHHHHHHHhccCcCCcccCceeee-chhHHHhhhhHhhccHHHHHHHHHhc-----cCCcchhhH
Confidence 3688999999999999999887643332 1222222 110000000000 111111111111 111222233
Q ss_pred HHHhhhCCceEEEEEeCCCChhh------hhhhhCCCCCCCCCceEEEEeCchhHhhhcCcccEEecCCCCHhHHHHHHH
Q 045677 107 MIGSRLRHKKVLLLIDDVADVEQ------LRGLFGKRDWFGLGSMIIITTRDEHLLKLHRVEEVYKLEALNFDEAFRLFC 180 (352)
Q Consensus 107 ~~~~~l~~~~~llvlDd~~~~~~------~~~l~~~~~~~~~~~~iiitsr~~~~~~~~~~~~~~~l~~l~~~e~~~ll~ 180 (352)
...+.+...++++++|.++.... +..+...++ .-+..++|+|+|..............++..+..+.....+.
T Consensus 297 ~~~e~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~-~~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~~~~~ 375 (824)
T COG5635 297 AHQELLKTGKLLLLLDGLDELEPKNQRALIREINKFLQ-EYPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQINQFIL 375 (824)
T ss_pred HHHHHHhccchhhHhhccchhhhhhHHHHHHHHHHHhh-hccCCeEEEEeccchhhhhhhhhhhccchhhhHHHHHHHHH
Confidence 33567788999999999864321 222211111 13477899999977665554445566677777665554443
No 413
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.74 E-value=0.0014 Score=49.54 Aligned_cols=25 Identities=32% Similarity=0.363 Sum_probs=21.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
+-++|+|.||+|||||+.+++....
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~ 32 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTG 32 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhC
Confidence 5588999999999999999997654
No 414
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.73 E-value=0.0015 Score=50.25 Aligned_cols=26 Identities=38% Similarity=0.521 Sum_probs=22.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcCC
Q 045677 34 TIGIWGMGGLGKTTLARVVYDLMSHE 59 (352)
Q Consensus 34 ~v~I~G~~GiGKT~La~~~~~~~~~~ 59 (352)
.+.|.|++|+||||+++.++..+.-.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~ 27 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK 27 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc
Confidence 47899999999999999999886644
No 415
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.73 E-value=0.0016 Score=46.92 Aligned_cols=22 Identities=36% Similarity=0.356 Sum_probs=19.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHH
Q 045677 32 VRTIGIWGMGGLGKTTLARVVY 53 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~ 53 (352)
...+.|.|++|+|||||+..+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4789999999999999999976
No 416
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=96.72 E-value=0.006 Score=46.34 Aligned_cols=25 Identities=20% Similarity=0.042 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcC
Q 045677 34 TIGIWGMGGLGKTTLARVVYDLMSH 58 (352)
Q Consensus 34 ~v~I~G~~GiGKT~La~~~~~~~~~ 58 (352)
.+.|.|++|+|||+.+..++.....
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~ 26 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLD 26 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHh
Confidence 3679999999999999888877543
No 417
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.72 E-value=0.0068 Score=59.19 Aligned_cols=96 Identities=18% Similarity=0.108 Sum_probs=54.9
Q ss_pred HHHHHHHh-cCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHHHHHHHHhccc---
Q 045677 19 EKLKFLMC-TGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQKQLLSDLLMLA--- 94 (352)
Q Consensus 19 ~~l~~~l~-~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--- 94 (352)
..|-..|. .+=....++.|+|++|+|||+|+.+++..........+|+..-.... . ..+..++...
T Consensus 46 ~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~------~----~~A~~lGvDl~~l 115 (790)
T PRK09519 46 IALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALD------P----DYAKKLGVDTDSL 115 (790)
T ss_pred HHHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchh------H----HHHHHcCCChhHe
Confidence 34445554 33345688999999999999999998776555555566664211111 1 1222222111
Q ss_pred -CCCccchhhhHHHHHhhhC-CceEEEEEeCC
Q 045677 95 -DNSIRNVYDGVNMIGSRLR-HKKVLLLIDDV 124 (352)
Q Consensus 95 -~~~~~~~~~~~~~~~~~l~-~~~~llvlDd~ 124 (352)
-......+.....+..... +..-+||+|.+
T Consensus 116 lv~~~~~~E~~l~~i~~lv~~~~~~LVVIDSI 147 (790)
T PRK09519 116 LVSQPDTGEQALEIADMLIRSGALDIVVIDSV 147 (790)
T ss_pred EEecCCCHHHHHHHHHHHhhcCCCeEEEEcch
Confidence 1112333445555555443 46779999998
No 418
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=96.72 E-value=0.0021 Score=47.78 Aligned_cols=27 Identities=30% Similarity=0.236 Sum_probs=23.6
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
...+|++.|+-|+|||||++.+++.+.
T Consensus 14 ~g~vi~L~GdLGaGKTtf~r~l~~~lg 40 (123)
T PF02367_consen 14 PGDVILLSGDLGAGKTTFVRGLARALG 40 (123)
T ss_dssp S-EEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 348999999999999999999998763
No 419
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.012 Score=51.61 Aligned_cols=31 Identities=29% Similarity=0.388 Sum_probs=27.0
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcCCCc
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMSHEFD 61 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~ 61 (352)
.++-|+++||+|+|||-||+.++.+....|-
T Consensus 126 p~kGiLL~GPpG~GKTmlAKA~Akeaga~fI 156 (386)
T KOG0737|consen 126 PPKGILLYGPPGTGKTMLAKAIAKEAGANFI 156 (386)
T ss_pred CCccceecCCCCchHHHHHHHHHHHcCCCcc
Confidence 4577999999999999999999998877764
No 420
>PRK05439 pantothenate kinase; Provisional
Probab=96.71 E-value=0.0026 Score=55.44 Aligned_cols=30 Identities=37% Similarity=0.429 Sum_probs=25.1
Q ss_pred CCCeEEEEEEcCCCCcHHHHHHHHHHHhcC
Q 045677 29 SNDVRTIGIWGMGGLGKTTLARVVYDLMSH 58 (352)
Q Consensus 29 ~~~~~~v~I~G~~GiGKT~La~~~~~~~~~ 58 (352)
.+.+.+|.|.|++|+||||+|..+...+..
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~ 112 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQALLSR 112 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 345678999999999999999998887654
No 421
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.71 E-value=0.0014 Score=54.31 Aligned_cols=23 Identities=35% Similarity=0.517 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHH
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYD 54 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~ 54 (352)
.-+|+|.|++|+|||||.+.++-
T Consensus 29 GEfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 29 GEFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 47899999999999999999874
No 422
>COG1485 Predicted ATPase [General function prediction only]
Probab=96.71 E-value=0.0069 Score=52.78 Aligned_cols=101 Identities=23% Similarity=0.340 Sum_probs=56.0
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHHh
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQKQLLSDLLMLADNSIRNVYDGVNMIGS 110 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (352)
..+-+.+||+-|.|||-|+..+++.+.-.-...+-+ ......+-..+..... .. +.+..+..
T Consensus 64 ~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HF-------------h~FM~~vH~~l~~l~g-~~----dpl~~iA~ 125 (367)
T COG1485 64 PVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHF-------------HRFMARVHQRLHTLQG-QT----DPLPPIAD 125 (367)
T ss_pred CCceEEEECCCCccHHHHHHHHHhhCCccccccccH-------------HHHHHHHHHHHHHHcC-CC----CccHHHHH
Confidence 456788999999999999999998864332111111 2222222222222121 11 33344555
Q ss_pred hhCCceEEEEEeCCC--Chhh---hhhhhCCCCCCCCCceEEEEeC
Q 045677 111 RLRHKKVLLLIDDVA--DVEQ---LRGLFGKRDWFGLGSMIIITTR 151 (352)
Q Consensus 111 ~l~~~~~llvlDd~~--~~~~---~~~l~~~~~~~~~~~~iiitsr 151 (352)
.+...-.+|+||++. ++.+ +..++..+- ..|+.++.||.
T Consensus 126 ~~~~~~~vLCfDEF~VtDI~DAMiL~rL~~~Lf--~~GV~lvaTSN 169 (367)
T COG1485 126 ELAAETRVLCFDEFEVTDIADAMILGRLLEALF--ARGVVLVATSN 169 (367)
T ss_pred HHHhcCCEEEeeeeeecChHHHHHHHHHHHHHH--HCCcEEEEeCC
Confidence 556667799999983 4443 333333332 34666666664
No 423
>PRK00625 shikimate kinase; Provisional
Probab=96.70 E-value=0.0016 Score=51.86 Aligned_cols=25 Identities=24% Similarity=0.446 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcC
Q 045677 34 TIGIWGMGGLGKTTLARVVYDLMSH 58 (352)
Q Consensus 34 ~v~I~G~~GiGKT~La~~~~~~~~~ 58 (352)
.|+|+|++|+||||+++.+++.+.-
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~ 26 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSL 26 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3789999999999999999988653
No 424
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=96.70 E-value=0.0086 Score=55.09 Aligned_cols=29 Identities=28% Similarity=0.384 Sum_probs=24.4
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcCC
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMSHE 59 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~~~ 59 (352)
..+-+.|.|.+|+|||+|+.+++.....+
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~~~ 170 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNISKQ 170 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhh
Confidence 34678899999999999999999887643
No 425
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.69 E-value=0.0012 Score=54.28 Aligned_cols=22 Identities=32% Similarity=0.160 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHH
Q 045677 33 RTIGIWGMGGLGKTTLARVVYD 54 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~ 54 (352)
..++|+|+.|.|||||++.++.
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 7899999999999999999884
No 426
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.69 E-value=0.0032 Score=49.45 Aligned_cols=116 Identities=20% Similarity=0.223 Sum_probs=56.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHHhh
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQKQLLSDLLMLADNSIRNVYDGVNMIGSR 111 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (352)
..++.|.|+.|.|||||++.+...... ....+++... ..... .. . .......-... ....+...-.+...
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~~~~-~~G~i~~~~~-~~~~~-~~-~----~~~~~i~~~~q--lS~G~~~r~~l~~~ 94 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLLKP-TSGEILIDGK-DIAKL-PL-E----ELRRRIGYVPQ--LSGGQRQRVALARA 94 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC-CccEEEECCE-EcccC-CH-H----HHHhceEEEee--CCHHHHHHHHHHHH
Confidence 368899999999999999998865432 2333443321 11100 00 0 11111110000 11112222234444
Q ss_pred hCCceEEEEEeCCC---ChhhhhhhhCCCCCC-CCCceEEEEeCchhHhh
Q 045677 112 LRHKKVLLLIDDVA---DVEQLRGLFGKRDWF-GLGSMIIITTRDEHLLK 157 (352)
Q Consensus 112 l~~~~~llvlDd~~---~~~~~~~l~~~~~~~-~~~~~iiitsr~~~~~~ 157 (352)
+...+-++++|+.. +......+...+... ..+..+|++|.+.....
T Consensus 95 l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 144 (157)
T cd00267 95 LLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAE 144 (157)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 55567899999983 333333333332211 12456777776554433
No 427
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.69 E-value=0.002 Score=41.24 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHh
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLM 56 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~ 56 (352)
.+.+|+|+.|+|||||.-.+..-+
T Consensus 24 ~~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 24 DVTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999998776543
No 428
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.68 E-value=0.0063 Score=53.59 Aligned_cols=36 Identities=25% Similarity=0.222 Sum_probs=26.7
Q ss_pred HHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHH
Q 045677 20 KLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 20 ~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
.|-..|..+=....++.|+|++|+|||+|+.+++..
T Consensus 84 ~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~ 119 (316)
T TIGR02239 84 ELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVT 119 (316)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHH
Confidence 344444433344688999999999999999988764
No 429
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.68 E-value=0.0047 Score=53.11 Aligned_cols=36 Identities=17% Similarity=0.138 Sum_probs=29.1
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeE
Q 045677 30 NDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSF 65 (352)
Q Consensus 30 ~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~ 65 (352)
.+..++.|.|.+|+|||||+..+...+.......+.
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI 137 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVI 137 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEE
Confidence 456889999999999999999999988666543333
No 430
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.67 E-value=0.0094 Score=50.46 Aligned_cols=23 Identities=30% Similarity=0.355 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 045677 34 TIGIWGMGGLGKTTLARVVYDLM 56 (352)
Q Consensus 34 ~v~I~G~~GiGKT~La~~~~~~~ 56 (352)
+.+|+|++|+|||+|+.+++..+
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~v 25 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAM 25 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHH
Confidence 56799999999999999998764
No 431
>PRK06217 hypothetical protein; Validated
Probab=96.67 E-value=0.0016 Score=52.67 Aligned_cols=24 Identities=33% Similarity=0.457 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 34 TIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 34 ~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
.|+|.|.+|+||||+++.+...+.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 488999999999999999998864
No 432
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.67 E-value=0.0021 Score=54.02 Aligned_cols=38 Identities=18% Similarity=0.056 Sum_probs=27.7
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEee
Q 045677 30 NDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLA 67 (352)
Q Consensus 30 ~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~ 67 (352)
....++.|.|++|+|||+|+.+++....++.....|+.
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~ 59 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVS 59 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 34568999999999999999888776543334444443
No 433
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.66 E-value=0.0095 Score=53.59 Aligned_cols=35 Identities=34% Similarity=0.304 Sum_probs=28.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHh--cCCCcceeEee
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLM--SHEFDGSSFLA 67 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~--~~~~~~~~~~~ 67 (352)
++++|.|.||+|||.||..++..+ ........+.+
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~ 38 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLC 38 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEE
Confidence 578999999999999999999998 55555555554
No 434
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.66 E-value=0.0015 Score=50.92 Aligned_cols=20 Identities=40% Similarity=0.635 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 045677 34 TIGIWGMGGLGKTTLARVVY 53 (352)
Q Consensus 34 ~v~I~G~~GiGKT~La~~~~ 53 (352)
.+.|+|.||+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 47899999999999999888
No 435
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=96.66 E-value=0.0045 Score=54.25 Aligned_cols=42 Identities=21% Similarity=0.253 Sum_probs=31.2
Q ss_pred HHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCC
Q 045677 18 LEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHE 59 (352)
Q Consensus 18 l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~ 59 (352)
...+.+.+....+...++.|+|++|+|||||+..+...+...
T Consensus 20 ~~~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~ 61 (300)
T TIGR00750 20 AKQLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMELRRR 61 (300)
T ss_pred HHHHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 334444444344567899999999999999999998876554
No 436
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=96.66 E-value=0.032 Score=55.77 Aligned_cols=161 Identities=16% Similarity=0.160 Sum_probs=84.8
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHH
Q 045677 30 NDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQKQLLSDLLMLADNSIRNVYDGVNMIG 109 (352)
Q Consensus 30 ~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (352)
.+++-|+.+|++|+|||..|++++.........+.|+..-+. ..+..+.+ ....++...+.
T Consensus 297 tpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkga-------------D~lskwvg------EaERqlrllFe 357 (1080)
T KOG0732|consen 297 TPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGA-------------DCLSKWVG------EAERQLRLLFE 357 (1080)
T ss_pred CCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCc-------------hhhccccC------cHHHHHHHHHH
Confidence 346779999999999999999999877666555555531111 11111111 11122223334
Q ss_pred hhhCCceEEEEEeCCCC-------hh-----h-hhhhhCCCCCCCCCceEEE---EeCchhHhhh----cCcccEEecCC
Q 045677 110 SRLRHKKVLLLIDDVAD-------VE-----Q-LRGLFGKRDWFGLGSMIII---TTRDEHLLKL----HRVEEVYKLEA 169 (352)
Q Consensus 110 ~~l~~~~~llvlDd~~~-------~~-----~-~~~l~~~~~~~~~~~~iii---tsr~~~~~~~----~~~~~~~~l~~ 169 (352)
++-+.++.++.+|.++. .. + +-.++..+.-....+.+++ |.|.+.+-+. .++...+.. +
T Consensus 358 eA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATnRpda~dpaLRRPgrfdref~f-~ 436 (1080)
T KOG0732|consen 358 EAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNRPDAIDPALRRPGRFDREFYF-P 436 (1080)
T ss_pred HHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccCCccccchhhcCCcccceeEee-e
Confidence 44567889999999962 11 1 2223333332333444444 3343332222 233333433 3
Q ss_pred CCHhHH-HHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchhHH
Q 045677 170 LNFDEA-FRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLAVD 212 (352)
Q Consensus 170 l~~~e~-~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~ 212 (352)
|+.-++ ..++.-+. ..-. .+........+++.|.|..-+--
T Consensus 437 lp~~~ar~~Il~Iht-rkw~-~~i~~~l~~~la~~t~gy~gaDl 478 (1080)
T KOG0732|consen 437 LPDVDARAKILDIHT-RKWE-PPISRELLLWLAEETSGYGGADL 478 (1080)
T ss_pred CCchHHHHHHHHHhc-cCCC-CCCCHHHHHHHHHhccccchHHH
Confidence 333333 33333222 2222 33456888999999999987763
No 437
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.66 E-value=0.0073 Score=50.86 Aligned_cols=124 Identities=18% Similarity=0.232 Sum_probs=63.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeecccccc-CCCcHHHHHHHHHHHHhccc------CCCccchhhh
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCD-KEGSVISLQKQLLSDLLMLA------DNSIRNVYDG 104 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~------~~~~~~~~~~ 104 (352)
...+.|+|++|+||||+++.+..-..-. ...+++... +... ..........+++...+... +-+....+.+
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~L~~pt-~G~i~f~g~-~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQ 116 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILGLEEPT-SGEILFEGK-DITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQ 116 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHcCcCCC-CceEEEcCc-chhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhh
Confidence 4688999999999999999988654433 233444311 1111 01111223334444332111 1112233333
Q ss_pred HHHHHhhhCCceEEEEEeCCCCh------hhhhhhhCCCCCCCCCceEEEEeCchhHhhh
Q 045677 105 VNMIGSRLRHKKVLLLIDDVADV------EQLRGLFGKRDWFGLGSMIIITTRDEHLLKL 158 (352)
Q Consensus 105 ~~~~~~~l~~~~~llvlDd~~~~------~~~~~l~~~~~~~~~~~~iiitsr~~~~~~~ 158 (352)
--.+.+.+.-++-++|.|+.-+. .++-.++..+.. ..+...++.|-+-.+...
T Consensus 117 Ri~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~-~~~lt~lFIsHDL~vv~~ 175 (268)
T COG4608 117 RIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQE-ELGLTYLFISHDLSVVRY 175 (268)
T ss_pred hHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHH-HhCCeEEEEEEEHHhhhh
Confidence 34455666778899999997321 223333333221 234556666666555444
No 438
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=96.66 E-value=0.007 Score=57.73 Aligned_cols=25 Identities=32% Similarity=0.440 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHH
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
....+.|+|++|+|||||++.+...
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g~ 384 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTGL 384 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4578999999999999999988753
No 439
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=96.65 E-value=0.0022 Score=52.67 Aligned_cols=22 Identities=27% Similarity=0.214 Sum_probs=20.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHH
Q 045677 32 VRTIGIWGMGGLGKTTLARVVY 53 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~ 53 (352)
.+++.|+|+.|.|||||++.+.
T Consensus 28 ~~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 28 KRVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred ceEEEEECCCCCChHHHHHHHH
Confidence 3789999999999999999987
No 440
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=96.65 E-value=0.0018 Score=48.10 Aligned_cols=21 Identities=38% Similarity=0.512 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 045677 35 IGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 35 v~I~G~~GiGKT~La~~~~~~ 55 (352)
|+|.|.+|+|||||++.++..
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~ 22 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGG 22 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 689999999999999999865
No 441
>PRK15453 phosphoribulokinase; Provisional
Probab=96.65 E-value=0.0033 Score=53.56 Aligned_cols=30 Identities=27% Similarity=0.401 Sum_probs=25.5
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHhcCC
Q 045677 30 NDVRTIGIWGMGGLGKTTLARVVYDLMSHE 59 (352)
Q Consensus 30 ~~~~~v~I~G~~GiGKT~La~~~~~~~~~~ 59 (352)
....+|.|.|.+|+||||+++.+.+.+...
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~ 32 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRE 32 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 345889999999999999999999877543
No 442
>PRK14527 adenylate kinase; Provisional
Probab=96.65 E-value=0.0019 Score=52.60 Aligned_cols=27 Identities=22% Similarity=0.239 Sum_probs=23.5
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
...+++|.|++|+||||+++.++....
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELG 31 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 457899999999999999999987653
No 443
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.65 E-value=0.019 Score=48.26 Aligned_cols=25 Identities=36% Similarity=0.485 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHh
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLM 56 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~ 56 (352)
..++.|.|+.|+|||||++.++-..
T Consensus 29 G~~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 29 GETVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCc
Confidence 4679999999999999999988643
No 444
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=96.63 E-value=0.053 Score=50.72 Aligned_cols=48 Identities=15% Similarity=0.077 Sum_probs=36.7
Q ss_pred CcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 10 ELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 10 ~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
.++|....+..+.+.+..-......++|.|++|+||+++|..+.....
T Consensus 144 ~ii~~S~~~~~~~~~~~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~ 191 (457)
T PRK11361 144 HILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNSR 191 (457)
T ss_pred ceecccHHHhHHHHHHHHHcCCCcEEEEEcCCCccHHHHHHHHHHhCC
Confidence 478888778777776665334446788999999999999999877543
No 445
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=96.63 E-value=0.01 Score=54.49 Aligned_cols=31 Identities=29% Similarity=0.522 Sum_probs=25.1
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcCCCc
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMSHEFD 61 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~ 61 (352)
..+-+.|.|.+|+|||+|+..++.....+..
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~~~~~ 173 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIAKEHG 173 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhcCC
Confidence 3467889999999999999999887665533
No 446
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=96.63 E-value=0.0091 Score=57.30 Aligned_cols=27 Identities=30% Similarity=0.228 Sum_probs=23.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcC
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLMSH 58 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~~~ 58 (352)
.++.+|+|.+|+||||++..+...+.+
T Consensus 167 ~~~~vItGgpGTGKTt~v~~ll~~l~~ 193 (615)
T PRK10875 167 RRISVISGGPGTGKTTTVAKLLAALIQ 193 (615)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 378999999999999999998877533
No 447
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.62 E-value=0.014 Score=52.71 Aligned_cols=30 Identities=30% Similarity=0.412 Sum_probs=24.9
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHhcCC
Q 045677 30 NDVRTIGIWGMGGLGKTTLARVVYDLMSHE 59 (352)
Q Consensus 30 ~~~~~v~I~G~~GiGKT~La~~~~~~~~~~ 59 (352)
+..+-+++.||+|+|||-|++.++.+....
T Consensus 184 ~p~rglLLfGPpgtGKtmL~~aiAsE~~at 213 (428)
T KOG0740|consen 184 EPVRGLLLFGPPGTGKTMLAKAIATESGAT 213 (428)
T ss_pred cccchhheecCCCCchHHHHHHHHhhhcce
Confidence 445678899999999999999999876544
No 448
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.62 E-value=0.0065 Score=53.50 Aligned_cols=29 Identities=24% Similarity=0.247 Sum_probs=25.4
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcCC
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMSHE 59 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~~~ 59 (352)
...++.++|++|+||||++..++..+...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~ 141 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQ 141 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 46789999999999999999999887654
No 449
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.62 E-value=0.0079 Score=52.87 Aligned_cols=87 Identities=26% Similarity=0.253 Sum_probs=49.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcCCC--cceeEeeeccccccCCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHHh
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLMSHEF--DGSSFLADVRERCDKEGSVISLQKQLLSDLLMLADNSIRNVYDGVNMIGS 110 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (352)
..++|.|+.|+||||+++.+...+.... ...+-+.+.......... . ... ...........+..
T Consensus 145 ~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n----------~-v~l---~~~~~~~~~~lv~~ 210 (323)
T PRK13833 145 LNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAEN----------A-VAL---HTSDTVDMARLLKS 210 (323)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCC----------E-EEe---ccCCCcCHHHHHHH
Confidence 4578999999999999999988764221 122222211111000000 0 000 00112234566677
Q ss_pred hhCCceEEEEEeCCCChhhhhhh
Q 045677 111 RLRHKKVLLLIDDVADVEQLRGL 133 (352)
Q Consensus 111 ~l~~~~~llvlDd~~~~~~~~~l 133 (352)
.++.++=.+++.++.+.+.+..+
T Consensus 211 aLR~~PD~IivGEiRg~ea~~~l 233 (323)
T PRK13833 211 TMRLRPDRIIVGEVRDGAALTLL 233 (323)
T ss_pred HhCCCCCEEEEeecCCHHHHHHH
Confidence 78888889999999777766543
No 450
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=96.61 E-value=0.0073 Score=57.72 Aligned_cols=26 Identities=27% Similarity=0.100 Sum_probs=22.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
.++++|+|.+|+||||++..++..+.
T Consensus 160 ~~~~vitGgpGTGKTt~v~~ll~~l~ 185 (586)
T TIGR01447 160 SNFSLITGGPGTGKTTTVARLLLALV 185 (586)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHHH
Confidence 37899999999999999998887654
No 451
>PRK10646 ADP-binding protein; Provisional
Probab=96.61 E-value=0.0041 Score=48.06 Aligned_cols=44 Identities=23% Similarity=0.258 Sum_probs=33.6
Q ss_pred ccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 14 MESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 14 R~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
-..+.+++.+.+...-....+|++.|.=|+|||||++.+++.+.
T Consensus 10 s~~~t~~l~~~la~~l~~g~vi~L~GdLGaGKTtf~rgl~~~Lg 53 (153)
T PRK10646 10 DEQATLDLGARVAKACDGATVIYLYGDLGAGKTTFSRGFLQALG 53 (153)
T ss_pred CHHHHHHHHHHHHHhCCCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 34566667666664333446899999999999999999998864
No 452
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=96.60 E-value=0.011 Score=54.10 Aligned_cols=37 Identities=32% Similarity=0.540 Sum_probs=27.4
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEee
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLA 67 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~ 67 (352)
..+-+.|.|.+|+|||+|+..++.....+....+.+.
T Consensus 142 ~GQr~~If~~~G~GKt~L~~~~~~~~~~~~~~v~V~a 178 (461)
T TIGR01039 142 KGGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFA 178 (461)
T ss_pred cCCEEEeecCCCCChHHHHHHHHHHHHhcCCCeEEEE
Confidence 3467889999999999999999887655433333333
No 453
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.59 E-value=0.002 Score=49.90 Aligned_cols=24 Identities=33% Similarity=0.495 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 34 TIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 34 ~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
+++|.|++|+||||++..++..+.
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999998764
No 454
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.59 E-value=0.0044 Score=58.91 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=20.7
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHH
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYD 54 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~ 54 (352)
...+|.++||+|.||||+|..+.+
T Consensus 493 pGe~vALVGPSGsGKSTiasLL~r 516 (716)
T KOG0058|consen 493 PGEVVALVGPSGSGKSTIASLLLR 516 (716)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999987765
No 455
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=96.58 E-value=0.0037 Score=56.77 Aligned_cols=51 Identities=22% Similarity=0.285 Sum_probs=37.4
Q ss_pred CcCcccccHHHHHHHHHHhc----------CCC------CeEEEEEEcCCCCcHHHHHHHHHHHhcC
Q 045677 8 PKELVGMESRLEKLKFLMCT----------GSN------DVRTIGIWGMGGLGKTTLARVVYDLMSH 58 (352)
Q Consensus 8 ~~~~vGR~~~l~~l~~~l~~----------~~~------~~~~v~I~G~~GiGKT~La~~~~~~~~~ 58 (352)
....||.+...+.+...+.. ... ....++++||+|+|||++|+.++..+..
T Consensus 76 ~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~ 142 (413)
T TIGR00382 76 DEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNV 142 (413)
T ss_pred cceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCC
Confidence 34569999999888765521 010 1246899999999999999999977643
No 456
>PRK14529 adenylate kinase; Provisional
Probab=96.58 E-value=0.017 Score=47.99 Aligned_cols=24 Identities=33% Similarity=0.358 Sum_probs=21.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhcC
Q 045677 35 IGIWGMGGLGKTTLARVVYDLMSH 58 (352)
Q Consensus 35 v~I~G~~GiGKT~La~~~~~~~~~ 58 (352)
++|.|++|+||||++..++..+.-
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~ 26 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDL 26 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC
Confidence 678999999999999999987653
No 457
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.58 E-value=0.0017 Score=52.28 Aligned_cols=24 Identities=33% Similarity=0.422 Sum_probs=21.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHh
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLM 56 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~ 56 (352)
++++|.|++|+|||||++.++...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 578999999999999999998754
No 458
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.57 E-value=0.015 Score=46.20 Aligned_cols=24 Identities=21% Similarity=0.127 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 34 TIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 34 ~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
.++|.|++|+|||++|..++....
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~ 26 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSG 26 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcC
Confidence 589999999999999999987753
No 459
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.57 E-value=0.0016 Score=51.50 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhc
Q 045677 35 IGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 35 v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
++|.|++|+||||+++.+...+.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~ 23 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLG 23 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999998763
No 460
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=96.57 E-value=0.03 Score=46.22 Aligned_cols=24 Identities=38% Similarity=0.583 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHH
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
..++.|.|+.|+|||||++.++-.
T Consensus 34 G~~~~i~G~nGsGKSTLl~~l~Gl 57 (207)
T cd03369 34 GEKIGIVGRTGAGKSTLILALFRF 57 (207)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 468999999999999999988754
No 461
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.56 E-value=0.0021 Score=53.02 Aligned_cols=26 Identities=27% Similarity=0.307 Sum_probs=23.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
..+++|+|++|+|||||+..++....
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 47899999999999999999998653
No 462
>PRK13947 shikimate kinase; Provisional
Probab=96.56 E-value=0.0022 Score=51.15 Aligned_cols=26 Identities=35% Similarity=0.437 Sum_probs=22.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcCC
Q 045677 34 TIGIWGMGGLGKTTLARVVYDLMSHE 59 (352)
Q Consensus 34 ~v~I~G~~GiGKT~La~~~~~~~~~~ 59 (352)
.|+|+|++|+||||+++.++..+.-.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~ 28 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFG 28 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 37899999999999999999887543
No 463
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.55 E-value=0.0021 Score=53.88 Aligned_cols=47 Identities=26% Similarity=0.149 Sum_probs=31.0
Q ss_pred HHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCC-CcceeEee
Q 045677 21 LKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHE-FDGSSFLA 67 (352)
Q Consensus 21 l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~-~~~~~~~~ 67 (352)
|-+.|..+=....+++|.|++|+|||+|+.+++...... ...++|+.
T Consensus 8 LD~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs 55 (226)
T PF06745_consen 8 LDELLGGGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVS 55 (226)
T ss_dssp HHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEE
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEE
Confidence 334443322345789999999999999999988765444 44555554
No 464
>COG1672 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.54 E-value=0.015 Score=52.55 Aligned_cols=56 Identities=21% Similarity=0.210 Sum_probs=45.2
Q ss_pred cCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEe
Q 045677 9 KELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFL 66 (352)
Q Consensus 9 ~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~ 66 (352)
..|++|+.|++.|...+. .+...+++|+|+--+|||+|+..+.......+......
T Consensus 2 ~~f~dRE~El~~L~~~~~--~~~~~~~~i~G~rrvGKTsLl~~~~~~~~~~~~~~~~~ 57 (359)
T COG1672 2 MKFFDREKELEELLKIIE--SEPPSIVFIYGRRRVGKTSLLKEFIKEKLGIYILVDFY 57 (359)
T ss_pred cchhhHHHHHHHHHHHHh--cCCCeEEEEEcccccCHHHHHHHHHhcCCCcceEEEee
Confidence 469999999999999998 33446799999999999999999998766654444333
No 465
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=96.53 E-value=0.01 Score=50.53 Aligned_cols=42 Identities=17% Similarity=0.236 Sum_probs=29.0
Q ss_pred HHHHHHHHhcCCCC-eEEEEEEcCCCCcHHHHHHHHHHHhcCC
Q 045677 18 LEKLKFLMCTGSND-VRTIGIWGMGGLGKTTLARVVYDLMSHE 59 (352)
Q Consensus 18 l~~l~~~l~~~~~~-~~~v~I~G~~GiGKT~La~~~~~~~~~~ 59 (352)
++.+...+.+..+. +-++.++|.+|+||+..++.+++.+...
T Consensus 95 v~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~ 137 (344)
T KOG2170|consen 95 VNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRG 137 (344)
T ss_pred HHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhc
Confidence 34444444444444 4456699999999999999999875443
No 466
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=96.53 E-value=0.0024 Score=51.67 Aligned_cols=25 Identities=32% Similarity=0.422 Sum_probs=22.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
++++|+||+|+||+|++..+.....
T Consensus 3 r~ivl~Gpsg~GK~tl~~~L~~~~~ 27 (184)
T smart00072 3 RPIVLSGPSGVGKGTLLAELIQEIP 27 (184)
T ss_pred cEEEEECCCCCCHHHHHHHHHhcCC
Confidence 6899999999999999999987754
No 467
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=96.53 E-value=0.036 Score=47.86 Aligned_cols=26 Identities=31% Similarity=0.540 Sum_probs=22.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
..++.|+|+.|.|||||++.+..-..
T Consensus 30 Ge~~~IvG~nGsGKSTLl~~L~gl~~ 55 (275)
T cd03289 30 GQRVGLLGRTGSGKSTLLSAFLRLLN 55 (275)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhhcC
Confidence 46899999999999999999886653
No 468
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.53 E-value=0.017 Score=54.38 Aligned_cols=151 Identities=16% Similarity=0.138 Sum_probs=80.6
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHHh
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQKQLLSDLLMLADNSIRNVYDGVNMIGS 110 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (352)
.++-++++||+|+|||-+++.++++... .+|..+. .+++..+.+.. ...+-..+.+
T Consensus 217 ~prg~Ll~gppg~Gkt~l~~aVa~e~~a----~~~~i~~--------------peli~k~~gEt------e~~LR~~f~~ 272 (693)
T KOG0730|consen 217 PPRGLLLYGPPGTGKTFLVRAVANEYGA----FLFLING--------------PELISKFPGET------ESNLRKAFAE 272 (693)
T ss_pred CCCCccccCCCCCChHHHHHHHHHHhCc----eeEeccc--------------HHHHHhcccch------HHHHHHHHHH
Confidence 4677889999999999999999977552 2333211 12222222211 1233444555
Q ss_pred hhCCc-eEEEEEeCCCChh---------h---hhhhhCCCCCCC-CCceEEE-EeCch-hHhhh---cCcccEEecCCCC
Q 045677 111 RLRHK-KVLLLIDDVADVE---------Q---LRGLFGKRDWFG-LGSMIII-TTRDE-HLLKL---HRVEEVYKLEALN 171 (352)
Q Consensus 111 ~l~~~-~~llvlDd~~~~~---------~---~~~l~~~~~~~~-~~~~iii-tsr~~-~~~~~---~~~~~~~~l~~l~ 171 (352)
....+ +.++.+|+++... + ...++..+.... .+..|++ +|++. .+.+. .++...+.+.--+
T Consensus 273 a~k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld~alRRgRfd~ev~IgiP~ 352 (693)
T KOG0730|consen 273 ALKFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLDPALRRGRFDREVEIGIPG 352 (693)
T ss_pred HhccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcCcEEEEEecCCccccChhhhcCCCcceeeecCCC
Confidence 56666 8899999985322 1 222333332222 2333444 44432 22222 2455666776666
Q ss_pred HhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCc
Q 045677 172 FDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLP 208 (352)
Q Consensus 172 ~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 208 (352)
..+-.++++.....-... .......++..+.|+-
T Consensus 353 ~~~RldIl~~l~k~~~~~---~~~~l~~iA~~thGyv 386 (693)
T KOG0730|consen 353 SDGRLDILRVLTKKMNLL---SDVDLEDIAVSTHGYV 386 (693)
T ss_pred chhHHHHHHHHHHhcCCc---chhhHHHHHHHccchh
Confidence 666666665554222222 2244666777777765
No 469
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.52 E-value=0.0078 Score=57.04 Aligned_cols=103 Identities=19% Similarity=0.177 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHHHHHHHH-------
Q 045677 18 LEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQKQLLSDL------- 90 (352)
Q Consensus 18 l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------- 90 (352)
+..|-+.+..+=....++.|.|++|+|||+|+.+++..........+|+. .......+..-+..+--.+
T Consensus 259 i~~lD~~l~GG~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis----~e~~~~~i~~~~~~~g~~~~~~~~~g 334 (509)
T PRK09302 259 VPDLDEMLGGGFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFA----FEESRAQLIRNARSWGIDLEKMEEKG 334 (509)
T ss_pred cHHHHHhhcCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE----ecCCHHHHHHHHHHcCCChHHHhhcC
Q ss_pred ---hcccCCCccchhhhHHHHHhhhCC-ceEEEEEeCC
Q 045677 91 ---LMLADNSIRNVYDGVNMIGSRLRH-KKVLLLIDDV 124 (352)
Q Consensus 91 ---~~~~~~~~~~~~~~~~~~~~~l~~-~~~llvlDd~ 124 (352)
.................+...+.. +.-++|||.+
T Consensus 335 ~l~i~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDsl 372 (509)
T PRK09302 335 LLKIICARPESYGLEDHLIIIKREIEEFKPSRVAIDPL 372 (509)
T ss_pred CceeecCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCH
No 470
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=96.52 E-value=0.012 Score=60.67 Aligned_cols=36 Identities=22% Similarity=0.158 Sum_probs=27.6
Q ss_pred HHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 18 LEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 18 l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
.++|.+.+.. .++++|+|++|+||||.+-+++....
T Consensus 72 ~~~Il~~l~~----~~vvii~g~TGSGKTTqlPq~lle~~ 107 (1283)
T TIGR01967 72 REDIAEAIAE----NQVVIIAGETGSGKTTQLPKICLELG 107 (1283)
T ss_pred HHHHHHHHHh----CceEEEeCCCCCCcHHHHHHHHHHcC
Confidence 3556666652 36899999999999999988877654
No 471
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.52 E-value=0.0028 Score=51.71 Aligned_cols=25 Identities=24% Similarity=0.259 Sum_probs=22.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHh
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLM 56 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~ 56 (352)
..+++|.|.+|+||||++..++.++
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3689999999999999999999874
No 472
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=96.51 E-value=0.0056 Score=51.28 Aligned_cols=47 Identities=19% Similarity=0.178 Sum_probs=31.9
Q ss_pred HHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEee
Q 045677 21 LKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLA 67 (352)
Q Consensus 21 l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~ 67 (352)
|-+.+..+=....++.|.|++|+|||+|+.+++....+....+.|+.
T Consensus 5 LD~~l~gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s 51 (224)
T TIGR03880 5 LDEMLGGGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYIS 51 (224)
T ss_pred hHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 34444432234688999999999999999999877544434444543
No 473
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.51 E-value=0.0021 Score=52.69 Aligned_cols=23 Identities=43% Similarity=0.612 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 045677 34 TIGIWGMGGLGKTTLARVVYDLM 56 (352)
Q Consensus 34 ~v~I~G~~GiGKT~La~~~~~~~ 56 (352)
++.|.|++|+|||||++.+...+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998876
No 474
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.51 E-value=0.0061 Score=54.00 Aligned_cols=93 Identities=19% Similarity=0.162 Sum_probs=51.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHHhhh
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQKQLLSDLLMLADNSIRNVYDGVNMIGSRL 112 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 112 (352)
..++|.|+.|+||||+++.+...+..+. ..+.+.+.....-.... ... .+...............+.+...+
T Consensus 161 ~nili~G~tgSGKTTll~aL~~~ip~~~-ri~tiEd~~El~l~~~~------n~~-~~~~~~~~~~~~~~~~~~ll~~~L 232 (332)
T PRK13900 161 KNIIISGGTSTGKTTFTNAALREIPAIE-RLITVEDAREIVLSNHP------NRV-HLLASKGGQGRAKVTTQDLIEACL 232 (332)
T ss_pred CcEEEECCCCCCHHHHHHHHHhhCCCCC-eEEEecCCCccccccCC------CEE-EEEecCCCCCcCcCcHHHHHHHHh
Confidence 6699999999999999999988765432 22222211111100000 000 000000011111223456677778
Q ss_pred CCceEEEEEeCCCChhhhhhh
Q 045677 113 RHKKVLLLIDDVADVEQLRGL 133 (352)
Q Consensus 113 ~~~~~llvlDd~~~~~~~~~l 133 (352)
+.++=.||++++.+.+.+..+
T Consensus 233 R~~PD~IivGEiR~~ea~~~l 253 (332)
T PRK13900 233 RLRPDRIIVGELRGAEAFSFL 253 (332)
T ss_pred ccCCCeEEEEecCCHHHHHHH
Confidence 888889999999887766543
No 475
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=96.50 E-value=0.0041 Score=49.51 Aligned_cols=36 Identities=28% Similarity=0.378 Sum_probs=30.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeee
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLAD 68 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~ 68 (352)
..+.|-|++|+|||+|..+.+..+++.|...+.-.+
T Consensus 14 ~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~D 49 (202)
T COG0378 14 LRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGD 49 (202)
T ss_pred EEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEece
Confidence 678899999999999999999999888876665543
No 476
>PRK14530 adenylate kinase; Provisional
Probab=96.50 E-value=0.0025 Score=52.96 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=21.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
+.|+|.|++|+||||+++.++..+.
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4588999999999999999987763
No 477
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=96.50 E-value=0.0021 Score=51.80 Aligned_cols=23 Identities=39% Similarity=0.671 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 045677 34 TIGIWGMGGLGKTTLARVVYDLM 56 (352)
Q Consensus 34 ~v~I~G~~GiGKT~La~~~~~~~ 56 (352)
+|.|.|.+|+||||||+.++..+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 47899999999999999999876
No 478
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=96.50 E-value=0.019 Score=49.00 Aligned_cols=27 Identities=22% Similarity=0.228 Sum_probs=22.5
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
..+-+.|.|.+|+|||+|+..+++...
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~~ 94 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQAG 94 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhhh
Confidence 346678999999999999999887653
No 479
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=96.50 E-value=0.0034 Score=55.52 Aligned_cols=48 Identities=21% Similarity=0.306 Sum_probs=36.2
Q ss_pred CCcCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHh
Q 045677 7 IPKELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLM 56 (352)
Q Consensus 7 ~~~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~ 56 (352)
.-..++|.+..++.|.-.+.. .+..-+++.|++|+|||++|+.+..-+
T Consensus 6 ~f~~i~Gq~~~~~~l~~~~~~--~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 6 PFSAIVGQEEMKQAMVLTAID--PGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred CHHHhCCHHHHHHHHHHHHhc--cCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 345679999998877754431 122458999999999999999998765
No 480
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.50 E-value=0.012 Score=54.75 Aligned_cols=29 Identities=24% Similarity=0.242 Sum_probs=24.2
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcCC
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMSHE 59 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~~~ 59 (352)
...++.|+|++|+||||++..++..+..+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~ 377 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQ 377 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 35789999999999999999988775443
No 481
>PRK13949 shikimate kinase; Provisional
Probab=96.49 E-value=0.0027 Score=50.57 Aligned_cols=25 Identities=32% Similarity=0.361 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcC
Q 045677 34 TIGIWGMGGLGKTTLARVVYDLMSH 58 (352)
Q Consensus 34 ~v~I~G~~GiGKT~La~~~~~~~~~ 58 (352)
-++|+|++|+||||+++.++..+.-
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~ 27 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGL 27 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCC
Confidence 4889999999999999999988753
No 482
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=96.49 E-value=0.0047 Score=50.63 Aligned_cols=36 Identities=31% Similarity=0.444 Sum_probs=27.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeec
Q 045677 34 TIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADV 69 (352)
Q Consensus 34 ~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~ 69 (352)
.+.|+|-||+||||++..++.++.......+...++
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDa 37 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDA 37 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeC
Confidence 478999999999999999777765554456666554
No 483
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=96.49 E-value=0.0061 Score=55.59 Aligned_cols=23 Identities=43% Similarity=0.666 Sum_probs=20.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHH
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYD 54 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~ 54 (352)
.-.+.|.||+|+|||||++.+.-
T Consensus 362 G~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 362 GEALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred CceEEEECCCCccHHHHHHHHHc
Confidence 35788999999999999998864
No 484
>PRK06761 hypothetical protein; Provisional
Probab=96.49 E-value=0.0036 Score=53.75 Aligned_cols=27 Identities=37% Similarity=0.633 Sum_probs=24.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcCC
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLMSHE 59 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~~~~ 59 (352)
++++|.|++|+||||+++.++..+...
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~ 30 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQN 30 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcC
Confidence 689999999999999999999987654
No 485
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.49 E-value=0.019 Score=50.67 Aligned_cols=27 Identities=30% Similarity=0.284 Sum_probs=23.2
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
.=+-|+++||+|+|||-||+.++.+-.
T Consensus 244 PWkgvLm~GPPGTGKTlLAKAvATEc~ 270 (491)
T KOG0738|consen 244 PWKGVLMVGPPGTGKTLLAKAVATECG 270 (491)
T ss_pred ccceeeeeCCCCCcHHHHHHHHHHhhc
Confidence 346689999999999999999997754
No 486
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.47 E-value=0.0028 Score=49.49 Aligned_cols=23 Identities=39% Similarity=0.583 Sum_probs=20.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhc
Q 045677 35 IGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 35 v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
++|+|++|+||||+++.++..+.
T Consensus 2 i~l~G~~GsGKstla~~la~~l~ 24 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALG 24 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC
Confidence 68999999999999999998764
No 487
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=96.46 E-value=0.027 Score=51.06 Aligned_cols=87 Identities=20% Similarity=0.116 Sum_probs=56.9
Q ss_pred CcCcccccHHHHHHHHHHhc-CCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCC----cHHHH
Q 045677 8 PKELVGMESRLEKLKFLMCT-GSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEG----SVISL 82 (352)
Q Consensus 8 ~~~~vGR~~~l~~l~~~l~~-~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l 82 (352)
+---|||+.+++.+.+-|.. ..++..+-+|.|.=|+|||.+++.+......+.-....+ ++... .+.. -...+
T Consensus 24 ~~~~VGr~~e~~~l~~~l~~v~~G~s~~kfi~G~YGsGKTf~l~~i~~~A~~~~fvvs~v-~ls~e-~~lh~~~g~~~~~ 101 (416)
T PF10923_consen 24 DHIAVGREREIEALDRDLDRVADGGSSFKFIRGEYGSGKTFFLRLIRERALEKGFVVSEV-DLSPE-RPLHGTGGQLEAL 101 (416)
T ss_pred cceeechHHHHHHHHHHHHHHhCCCCeEEEEEeCCCCcHHHHHHHHHHHHHHcCCEEEEE-ecCCC-cccccccccHHHH
Confidence 34459999999999998875 345667888999999999999999888754442222222 22221 1112 33556
Q ss_pred HHHHHHHHhcccCC
Q 045677 83 QKQLLSDLLMLADN 96 (352)
Q Consensus 83 ~~~~~~~~~~~~~~ 96 (352)
.++++..+......
T Consensus 102 Yr~l~~nL~t~~~p 115 (416)
T PF10923_consen 102 YRELMRNLSTKTKP 115 (416)
T ss_pred HHHHHHhcCCCCCC
Confidence 66777666554443
No 488
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.46 E-value=0.0023 Score=53.31 Aligned_cols=25 Identities=48% Similarity=0.627 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcC
Q 045677 34 TIGIWGMGGLGKTTLARVVYDLMSH 58 (352)
Q Consensus 34 ~v~I~G~~GiGKT~La~~~~~~~~~ 58 (352)
++.|.|++|+|||||++.+...+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~ 25 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSR 25 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhh
Confidence 4789999999999999999988753
No 489
>PLN02200 adenylate kinase family protein
Probab=96.45 E-value=0.0033 Score=52.89 Aligned_cols=26 Identities=19% Similarity=0.141 Sum_probs=22.7
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHh
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLM 56 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~ 56 (352)
.+.+++|.|++|+||||++..++...
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 35678999999999999999998765
No 490
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=96.44 E-value=0.014 Score=49.45 Aligned_cols=26 Identities=31% Similarity=0.520 Sum_probs=22.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcCC
Q 045677 34 TIGIWGMGGLGKTTLARVVYDLMSHE 59 (352)
Q Consensus 34 ~v~I~G~~GiGKT~La~~~~~~~~~~ 59 (352)
++.|.|.+|+||||++..+...++..
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~ 26 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFARE 26 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999887654
No 491
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.44 E-value=0.0026 Score=50.33 Aligned_cols=21 Identities=38% Similarity=0.278 Sum_probs=17.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 045677 35 IGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 35 v~I~G~~GiGKT~La~~~~~~ 55 (352)
|+|+|.+|+|||||+..+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999977
No 492
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=96.43 E-value=0.0039 Score=48.77 Aligned_cols=26 Identities=27% Similarity=0.303 Sum_probs=23.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcCC
Q 045677 34 TIGIWGMGGLGKTTLARVVYDLMSHE 59 (352)
Q Consensus 34 ~v~I~G~~GiGKT~La~~~~~~~~~~ 59 (352)
++.|+|+.|+|||||+..+...++..
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~ 26 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKAR 26 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 36799999999999999999988665
No 493
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=96.43 E-value=0.011 Score=59.53 Aligned_cols=27 Identities=19% Similarity=0.217 Sum_probs=21.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcCC
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLMSHE 59 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~~~~ 59 (352)
.+++|+|.+|+||||++..+...+...
T Consensus 363 ~v~vv~G~AGTGKTT~l~~~~~~~e~~ 389 (988)
T PRK13889 363 DLGVVVGYAGTGKSAMLGVAREAWEAA 389 (988)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 467799999999999988776665443
No 494
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=96.43 E-value=0.0061 Score=49.49 Aligned_cols=42 Identities=31% Similarity=0.379 Sum_probs=30.2
Q ss_pred CcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHH
Q 045677 10 ELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 10 ~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
..+|.+.....|.-.... .+-++++|++|+|||.+|+.+..-
T Consensus 4 dI~GQe~aKrAL~iAAaG----~h~lLl~GppGtGKTmlA~~l~~l 45 (206)
T PF01078_consen 4 DIVGQEEAKRALEIAAAG----GHHLLLIGPPGTGKTMLARRLPSL 45 (206)
T ss_dssp CSSSTHHHHHHHHHHHHC----C--EEEES-CCCTHHHHHHHHHHC
T ss_pred hhcCcHHHHHHHHHHHcC----CCCeEEECCCCCCHHHHHHHHHHh
Confidence 567887777766655552 267899999999999999998763
No 495
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.42 E-value=0.097 Score=51.26 Aligned_cols=25 Identities=24% Similarity=0.251 Sum_probs=22.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHh
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLM 56 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~ 56 (352)
..++.++|+.|+||||.+..++..+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~ 209 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARC 209 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhH
Confidence 4799999999999999999998765
No 496
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.41 E-value=0.0028 Score=51.38 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHh
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLM 56 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~ 56 (352)
.+++|.|++|+|||||++.++...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 478899999999999999997654
No 497
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.41 E-value=0.028 Score=49.96 Aligned_cols=35 Identities=23% Similarity=0.217 Sum_probs=25.9
Q ss_pred HHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHH
Q 045677 21 LKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 21 l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
|-+.|..+=....++.|+|++|+|||+|+.+++..
T Consensus 112 LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~ 146 (342)
T PLN03186 112 LDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVT 146 (342)
T ss_pred HHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHH
Confidence 44444433234688889999999999999888754
No 498
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.40 E-value=0.0029 Score=51.23 Aligned_cols=22 Identities=36% Similarity=0.454 Sum_probs=19.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHH
Q 045677 32 VRTIGIWGMGGLGKTTLARVVY 53 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~ 53 (352)
..+++|.||+|+|||||.+-+-
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN 49 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLN 49 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4789999999999999987653
No 499
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.37 E-value=0.008 Score=50.72 Aligned_cols=23 Identities=35% Similarity=0.492 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHH
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYD 54 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~ 54 (352)
..+++|.||.|+|||||.+.++.
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 47899999999999999999876
No 500
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.37 E-value=0.0033 Score=55.25 Aligned_cols=24 Identities=33% Similarity=0.296 Sum_probs=21.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHh
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLM 56 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~ 56 (352)
.++++.|++|+||||+|+.+...+
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHC
Confidence 678899999999999999998775
Done!