Query 045677
Match_columns 352
No_of_seqs 146 out of 1687
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 07:13:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045677.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045677hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 1.9E-39 6.4E-44 306.1 22.3 300 12-324 131-471 (549)
2 3sfz_A APAF-1, apoptotic pepti 100.0 1.4E-37 4.8E-42 320.8 24.2 309 3-324 118-452 (1249)
3 1z6t_A APAF-1, apoptotic prote 100.0 6E-37 2E-41 292.7 22.5 301 4-321 119-449 (591)
4 1vt4_I APAF-1 related killer D 100.0 6.8E-35 2.3E-39 280.9 17.4 279 9-315 128-434 (1221)
5 2qen_A Walker-type ATPase; unk 99.9 3.5E-23 1.2E-27 184.8 19.8 295 2-318 5-349 (350)
6 2fna_A Conserved hypothetical 99.9 2.6E-22 9E-27 179.5 18.0 293 2-317 6-356 (357)
7 1w5s_A Origin recognition comp 99.8 1.9E-19 6.6E-24 164.1 19.1 289 4-303 17-372 (412)
8 1fnn_A CDC6P, cell division co 99.7 2.6E-16 8.9E-21 142.2 22.8 288 5-304 13-353 (389)
9 2qby_A CDC6 homolog 1, cell di 99.7 4.6E-17 1.6E-21 147.0 15.9 288 4-302 15-348 (386)
10 2qby_B CDC6 homolog 3, cell di 99.7 8.7E-16 3E-20 138.6 24.2 282 7-302 18-339 (384)
11 2v1u_A Cell division control p 99.7 1.7E-15 5.8E-20 136.7 19.8 288 4-302 14-351 (387)
12 1njg_A DNA polymerase III subu 99.6 3.5E-14 1.2E-18 119.6 16.3 201 5-218 19-231 (250)
13 2chg_A Replication factor C sm 99.5 2.1E-13 7E-18 113.2 16.7 189 5-217 13-206 (226)
14 1sxj_B Activator 1 37 kDa subu 99.5 1.7E-12 5.7E-17 114.1 17.9 184 6-213 18-207 (323)
15 1iqp_A RFCS; clamp loader, ext 99.4 1.4E-11 4.8E-16 108.3 16.9 191 5-219 21-216 (327)
16 2chq_A Replication factor C sm 99.4 4.3E-11 1.5E-15 104.8 19.1 188 6-217 14-206 (319)
17 1hqc_A RUVB; extended AAA-ATPa 99.4 4.4E-11 1.5E-15 105.1 18.1 257 5-306 8-302 (324)
18 1jr3_A DNA polymerase III subu 99.4 8.9E-11 3.1E-15 105.2 20.3 199 6-217 13-223 (373)
19 3te6_A Regulatory protein SIR3 99.2 6.5E-11 2.2E-15 102.3 12.6 170 10-183 21-211 (318)
20 3pfi_A Holliday junction ATP-d 99.2 3E-10 1E-14 100.4 16.4 256 6-307 26-318 (338)
21 1jbk_A CLPB protein; beta barr 99.2 6.9E-11 2.4E-15 95.4 10.8 49 7-57 20-68 (195)
22 3uk6_A RUVB-like 2; hexameric 99.2 5.6E-10 1.9E-14 99.8 16.5 205 8-217 43-305 (368)
23 3bos_A Putative DNA replicatio 99.2 1.2E-10 4.2E-15 97.5 10.8 175 8-217 27-219 (242)
24 3h4m_A Proteasome-activating n 99.1 1.4E-09 4.9E-14 93.6 15.5 186 4-216 12-232 (285)
25 1sxj_A Activator 1 95 kDa subu 99.1 2.5E-09 8.6E-14 99.7 17.1 197 5-217 35-254 (516)
26 1sxj_D Activator 1 41 kDa subu 99.1 2.8E-09 9.6E-14 94.7 16.0 198 5-216 33-236 (353)
27 1d2n_A N-ethylmaleimide-sensit 99.0 4.6E-09 1.6E-13 89.8 14.8 170 8-207 32-229 (272)
28 3pvs_A Replication-associated 99.0 1.6E-09 5.6E-14 98.7 12.6 180 7-217 24-217 (447)
29 1sxj_E Activator 1 40 kDa subu 99.0 4.2E-09 1.4E-13 93.6 14.2 200 6-217 11-239 (354)
30 3eie_A Vacuolar protein sortin 99.0 2.5E-08 8.4E-13 87.4 18.8 183 9-217 18-230 (322)
31 2qz4_A Paraplegin; AAA+, SPG7, 99.0 3E-08 1E-12 84.1 18.8 185 8-217 5-224 (262)
32 3d8b_A Fidgetin-like protein 1 99.0 2.4E-08 8.1E-13 88.7 18.8 184 7-217 82-297 (357)
33 3syl_A Protein CBBX; photosynt 99.0 2.9E-09 1E-13 92.7 12.1 150 10-183 32-217 (309)
34 2z4s_A Chromosomal replication 99.0 5.8E-09 2E-13 95.2 14.1 186 9-217 105-308 (440)
35 1l8q_A Chromosomal replication 99.0 3.5E-08 1.2E-12 86.5 17.8 183 8-216 10-209 (324)
36 1xwi_A SKD1 protein; VPS4B, AA 99.0 1.2E-07 4.1E-12 82.8 20.6 184 9-217 12-225 (322)
37 2qp9_X Vacuolar protein sortin 98.9 5.9E-08 2E-12 86.0 18.2 184 8-217 50-263 (355)
38 3u61_B DNA polymerase accessor 98.9 2E-08 6.7E-13 88.1 14.8 184 6-218 23-219 (324)
39 1a5t_A Delta prime, HOLB; zinc 98.9 3.9E-08 1.3E-12 86.5 16.5 181 15-214 8-204 (334)
40 3vfd_A Spastin; ATPase, microt 98.9 6.2E-08 2.1E-12 87.1 18.0 184 8-217 114-328 (389)
41 2p65_A Hypothetical protein PF 98.9 2.5E-09 8.7E-14 85.6 7.6 50 7-58 20-69 (187)
42 1sxj_C Activator 1 40 kDa subu 98.9 1.2E-07 4.3E-12 83.6 19.1 185 9-217 25-214 (340)
43 2zan_A Vacuolar protein sortin 98.9 1.2E-07 4.2E-12 86.5 18.8 185 8-217 133-347 (444)
44 3b9p_A CG5977-PA, isoform A; A 98.9 2.4E-07 8.1E-12 80.1 19.0 184 7-217 19-235 (297)
45 3pxg_A Negative regulator of g 98.8 3.9E-08 1.3E-12 90.5 13.8 147 8-183 179-338 (468)
46 1in4_A RUVB, holliday junction 98.8 5E-07 1.7E-11 79.4 19.9 256 9-310 25-318 (334)
47 3cf0_A Transitional endoplasmi 98.8 4.4E-07 1.5E-11 78.6 17.8 175 9-210 15-223 (301)
48 1qvr_A CLPB protein; coiled co 98.8 3.6E-08 1.2E-12 97.5 11.6 152 8-182 169-344 (854)
49 4b4t_J 26S protease regulatory 98.8 7E-07 2.4E-11 79.2 18.4 172 9-208 148-354 (405)
50 3n70_A Transport activator; si 98.8 1.3E-08 4.3E-13 78.2 6.4 50 9-58 1-50 (145)
51 1ofh_A ATP-dependent HSL prote 98.8 8.9E-08 3E-12 83.2 12.6 51 8-58 14-76 (310)
52 3hu3_A Transitional endoplasmi 98.7 1E-07 3.4E-12 87.8 12.7 180 9-215 204-415 (489)
53 1r6b_X CLPA protein; AAA+, N-t 98.7 2.8E-07 9.7E-12 90.2 16.4 152 9-183 186-362 (758)
54 4b4t_L 26S protease subunit RP 98.7 1.1E-06 3.8E-11 79.1 17.3 173 9-208 181-387 (437)
55 4b4t_H 26S protease regulatory 98.7 1.6E-06 5.5E-11 78.0 18.1 172 9-208 209-415 (467)
56 1ojl_A Transcriptional regulat 98.7 2.4E-07 8.3E-12 80.2 12.4 49 9-57 2-50 (304)
57 3pxi_A Negative regulator of g 98.7 1.9E-07 6.5E-12 91.3 13.1 147 8-183 179-338 (758)
58 1lv7_A FTSH; alpha/beta domain 98.6 7.5E-07 2.6E-11 75.2 14.7 183 7-216 10-226 (257)
59 2gno_A DNA polymerase III, gam 98.6 3.5E-07 1.2E-11 79.0 12.0 146 13-183 1-152 (305)
60 2ce7_A Cell division protein F 98.6 1.1E-06 3.6E-11 80.4 15.8 179 9-214 16-228 (476)
61 4b4t_K 26S protease regulatory 98.6 1.1E-06 3.8E-11 78.9 15.5 172 9-208 172-379 (428)
62 4fcw_A Chaperone protein CLPB; 98.6 4.8E-07 1.6E-11 78.7 12.7 52 8-59 16-74 (311)
63 2r62_A Cell division protease 98.6 7E-08 2.4E-12 82.1 6.8 176 7-209 9-219 (268)
64 2c9o_A RUVB-like 1; hexameric 98.6 3.7E-06 1.2E-10 77.1 17.9 95 117-214 297-409 (456)
65 4b4t_M 26S protease regulatory 98.6 1.9E-06 6.4E-11 77.6 15.3 172 9-208 181-387 (434)
66 4b4t_I 26S protease regulatory 98.6 2.6E-06 8.9E-11 75.8 16.0 172 9-208 182-388 (437)
67 2bjv_A PSP operon transcriptio 98.6 4.1E-07 1.4E-11 77.2 10.6 50 9-58 6-55 (265)
68 3ec2_A DNA replication protein 98.5 2.4E-07 8.2E-12 73.7 7.6 49 9-57 10-63 (180)
69 3co5_A Putative two-component 98.4 4.1E-08 1.4E-12 75.1 0.9 50 8-57 3-52 (143)
70 2kjq_A DNAA-related protein; s 98.4 2.8E-07 9.7E-12 70.8 4.9 51 4-59 13-63 (149)
71 3t15_A Ribulose bisphosphate c 98.4 4.2E-06 1.5E-10 72.0 12.6 29 31-59 35-63 (293)
72 2w58_A DNAI, primosome compone 98.4 1.4E-06 4.8E-11 70.6 8.9 58 9-66 25-88 (202)
73 3pxi_A Negative regulator of g 98.4 2.2E-06 7.4E-11 83.8 11.7 150 9-183 491-675 (758)
74 3cf2_A TER ATPase, transitiona 98.3 4.1E-06 1.4E-10 81.0 11.2 175 9-210 204-409 (806)
75 1ixz_A ATP-dependent metallopr 98.3 4.2E-05 1.4E-09 64.2 15.9 174 8-208 15-221 (254)
76 2dhr_A FTSH; AAA+ protein, hex 98.3 1.7E-05 5.7E-10 73.0 14.2 180 7-214 29-243 (499)
77 1iy2_A ATP-dependent metallopr 98.2 3.2E-05 1.1E-09 65.9 14.3 182 5-213 36-251 (278)
78 1um8_A ATP-dependent CLP prote 98.2 7.6E-06 2.6E-10 73.1 10.0 49 9-57 21-97 (376)
79 1r6b_X CLPA protein; AAA+, N-t 98.1 2.4E-05 8.2E-10 76.5 11.7 50 8-57 457-513 (758)
80 3m6a_A ATP-dependent protease 98.0 5.8E-05 2E-09 70.6 12.6 49 11-59 83-135 (543)
81 1ypw_A Transitional endoplasmi 98.0 3.9E-05 1.3E-09 75.1 11.8 150 9-183 204-385 (806)
82 3nbx_X ATPase RAVA; AAA+ ATPas 98.0 2.1E-05 7.2E-10 72.4 8.9 47 8-58 21-67 (500)
83 2x8a_A Nuclear valosin-contain 98.0 0.00024 8.4E-09 60.2 14.6 150 9-183 10-191 (274)
84 1qvr_A CLPB protein; coiled co 97.9 0.00015 5.1E-09 71.8 13.7 51 9-59 558-615 (854)
85 1jr3_D DNA polymerase III, del 97.7 0.0018 6E-08 56.8 16.4 157 31-216 17-186 (343)
86 2cvh_A DNA repair and recombin 97.7 0.00023 8E-09 58.0 9.9 24 31-54 19-42 (220)
87 1g5t_A COB(I)alamin adenosyltr 97.6 5E-05 1.7E-09 60.3 4.1 120 32-153 28-163 (196)
88 3hr8_A Protein RECA; alpha and 97.6 0.00019 6.4E-09 63.0 8.1 49 19-67 47-96 (356)
89 3cf2_A TER ATPase, transitiona 97.6 9E-05 3.1E-09 71.8 6.4 172 9-207 477-682 (806)
90 2vhj_A Ntpase P4, P4; non- hyd 97.6 7.8E-05 2.7E-09 64.0 5.2 24 32-55 123-146 (331)
91 3io5_A Recombination and repai 97.5 0.00032 1.1E-08 60.0 8.7 34 34-67 30-65 (333)
92 2b8t_A Thymidine kinase; deoxy 97.5 0.00026 9E-09 57.8 7.9 111 31-152 11-125 (223)
93 2r44_A Uncharacterized protein 97.5 7.9E-05 2.7E-09 65.2 4.4 48 8-59 26-73 (331)
94 3hws_A ATP-dependent CLP prote 97.4 0.00013 4.4E-09 64.7 5.5 48 10-57 16-76 (363)
95 1v5w_A DMC1, meiotic recombina 97.3 0.0016 5.4E-08 57.1 11.0 36 21-56 111-146 (343)
96 1rz3_A Hypothetical protein rb 97.3 0.00037 1.3E-08 56.2 6.4 45 13-57 2-47 (201)
97 2qgz_A Helicase loader, putati 97.3 0.00029 9.9E-09 60.8 5.8 58 9-66 124-187 (308)
98 1n0w_A DNA repair protein RAD5 97.3 0.00034 1.2E-08 58.0 5.7 26 31-56 23-48 (243)
99 2zr9_A Protein RECA, recombina 97.3 0.00053 1.8E-08 60.2 7.1 37 31-67 60-96 (349)
100 1ex7_A Guanylate kinase; subst 97.3 0.00012 4.1E-09 58.0 2.6 28 33-60 2-29 (186)
101 3c8u_A Fructokinase; YP_612366 97.2 0.00033 1.1E-08 56.8 5.2 41 17-57 7-47 (208)
102 3jvv_A Twitching mobility prot 97.2 0.0012 4.2E-08 58.0 9.0 107 33-153 124-231 (356)
103 3dzd_A Transcriptional regulat 97.2 0.004 1.4E-07 55.1 12.3 51 9-59 129-179 (368)
104 1g8p_A Magnesium-chelatase 38 97.2 0.00017 5.8E-09 63.5 3.4 47 9-57 24-70 (350)
105 1ypw_A Transitional endoplasmi 97.2 0.00011 3.9E-09 71.9 2.3 51 9-59 477-538 (806)
106 1qhx_A CPT, protein (chloramph 97.2 0.0002 7E-09 56.3 3.4 26 33-58 4-29 (178)
107 1xp8_A RECA protein, recombina 97.2 0.00082 2.8E-08 59.3 7.4 83 32-124 74-161 (366)
108 1tue_A Replication protein E1; 97.2 0.00035 1.2E-08 55.7 4.4 40 18-58 45-84 (212)
109 1u94_A RECA protein, recombina 97.2 0.00073 2.5E-08 59.4 6.8 37 31-67 62-98 (356)
110 2z43_A DNA repair and recombin 97.2 0.0012 4.1E-08 57.4 8.2 28 31-58 106-133 (324)
111 1sky_E F1-ATPase, F1-ATP synth 97.1 0.0021 7.1E-08 58.2 9.4 28 33-60 152-179 (473)
112 3bh0_A DNAB-like replicative h 97.1 0.0051 1.8E-07 53.2 11.4 37 31-67 67-103 (315)
113 3sr0_A Adenylate kinase; phosp 97.1 0.0012 3.9E-08 53.4 6.7 23 34-56 2-24 (206)
114 1vma_A Cell division protein F 97.0 0.0023 8E-08 54.9 8.8 29 31-59 103-131 (306)
115 3umf_A Adenylate kinase; rossm 97.0 0.002 6.9E-08 52.3 7.9 27 30-56 27-53 (217)
116 3kb2_A SPBC2 prophage-derived 97.0 0.0004 1.4E-08 54.2 3.6 25 33-57 2-26 (173)
117 1ny5_A Transcriptional regulat 97.0 0.011 3.8E-07 52.7 13.2 49 9-57 137-185 (387)
118 1odf_A YGR205W, hypothetical 3 97.0 0.001 3.6E-08 56.7 6.2 30 29-58 28-57 (290)
119 3tlx_A Adenylate kinase 2; str 97.0 0.0008 2.7E-08 56.0 5.1 44 13-56 10-53 (243)
120 1nks_A Adenylate kinase; therm 96.9 0.00083 2.9E-08 53.4 4.9 27 33-59 2-28 (194)
121 2yvu_A Probable adenylyl-sulfa 96.9 0.00081 2.8E-08 53.3 4.6 29 31-59 12-40 (186)
122 2r2a_A Uncharacterized protein 96.9 0.0031 1.1E-07 50.5 8.0 23 33-55 6-28 (199)
123 3uie_A Adenylyl-sulfate kinase 96.9 0.00092 3.1E-08 53.7 5.0 27 31-57 24-50 (200)
124 1kgd_A CASK, peripheral plasma 96.9 0.00051 1.8E-08 54.2 3.4 26 32-57 5-30 (180)
125 2i1q_A DNA repair and recombin 96.9 0.0028 9.6E-08 55.0 8.4 26 31-56 97-122 (322)
126 1ly1_A Polynucleotide kinase; 96.9 0.00058 2E-08 53.7 3.7 22 33-54 3-24 (181)
127 3trf_A Shikimate kinase, SK; a 96.9 0.00057 1.9E-08 54.1 3.6 25 33-57 6-30 (185)
128 3vaa_A Shikimate kinase, SK; s 96.9 0.00059 2E-08 54.8 3.7 26 32-57 25-50 (199)
129 1u0j_A DNA replication protein 96.9 0.0011 3.7E-08 55.4 5.2 38 19-56 91-128 (267)
130 1pzn_A RAD51, DNA repair and r 96.9 0.0025 8.7E-08 55.9 7.9 27 31-57 130-156 (349)
131 2rhm_A Putative kinase; P-loop 96.9 0.00072 2.5E-08 53.8 4.0 26 32-57 5-30 (193)
132 3ice_A Transcription terminati 96.9 0.00043 1.5E-08 60.7 2.7 27 32-58 174-200 (422)
133 1gvn_B Zeta; postsegregational 96.9 0.0012 4.1E-08 56.3 5.4 28 30-57 31-58 (287)
134 3kl4_A SRP54, signal recogniti 96.8 0.0057 2E-07 55.0 9.8 30 31-60 96-125 (433)
135 3ney_A 55 kDa erythrocyte memb 96.8 0.00068 2.3E-08 54.1 3.4 27 31-57 18-44 (197)
136 2pze_A Cystic fibrosis transme 96.8 0.013 4.4E-07 48.0 11.2 25 32-56 34-58 (229)
137 1zp6_A Hypothetical protein AT 96.8 0.00071 2.4E-08 53.8 3.4 24 32-55 9-32 (191)
138 2q6t_A DNAB replication FORK h 96.8 0.0082 2.8E-07 54.6 10.8 53 31-90 199-252 (444)
139 3tau_A Guanylate kinase, GMP k 96.8 0.00075 2.6E-08 54.6 3.5 27 31-57 7-33 (208)
140 3lw7_A Adenylate kinase relate 96.8 0.00067 2.3E-08 53.0 3.1 23 33-56 2-24 (179)
141 1knq_A Gluconate kinase; ALFA/ 96.8 0.0012 4.2E-08 51.6 4.5 25 32-56 8-32 (175)
142 3dm5_A SRP54, signal recogniti 96.8 0.0061 2.1E-07 54.9 9.4 30 31-60 99-128 (443)
143 1kag_A SKI, shikimate kinase I 96.8 0.00068 2.3E-08 53.0 2.9 25 33-57 5-29 (173)
144 2ze6_A Isopentenyl transferase 96.8 0.00096 3.3E-08 55.8 4.0 25 33-57 2-26 (253)
145 1kht_A Adenylate kinase; phosp 96.8 0.00087 3E-08 53.2 3.5 27 33-59 4-30 (192)
146 2qor_A Guanylate kinase; phosp 96.7 0.00068 2.3E-08 54.7 2.8 26 32-57 12-37 (204)
147 3iij_A Coilin-interacting nucl 96.7 0.00071 2.4E-08 53.3 2.9 26 32-57 11-36 (180)
148 3e70_C DPA, signal recognition 96.7 0.011 3.8E-07 51.2 10.5 29 31-59 128-156 (328)
149 2bbw_A Adenylate kinase 4, AK4 96.7 0.00096 3.3E-08 55.5 3.7 27 31-57 26-52 (246)
150 3a00_A Guanylate kinase, GMP k 96.7 0.0008 2.7E-08 53.4 3.0 26 33-58 2-27 (186)
151 4eun_A Thermoresistant glucoki 96.7 0.001 3.5E-08 53.4 3.6 26 31-56 28-53 (200)
152 3k1j_A LON protease, ATP-depen 96.7 0.0013 4.4E-08 62.4 4.9 47 9-59 41-87 (604)
153 1g41_A Heat shock protein HSLU 96.7 0.0014 4.8E-08 59.1 4.7 51 9-59 15-77 (444)
154 3cm0_A Adenylate kinase; ATP-b 96.7 0.0014 4.8E-08 51.8 4.3 26 32-57 4-29 (186)
155 1tev_A UMP-CMP kinase; ploop, 96.7 0.0013 4.5E-08 52.4 4.0 25 33-57 4-28 (196)
156 4a1f_A DNAB helicase, replicat 96.7 0.012 4E-07 51.2 10.2 37 31-67 45-81 (338)
157 2px0_A Flagellar biosynthesis 96.7 0.0071 2.4E-07 51.7 8.7 28 31-58 104-131 (296)
158 2plr_A DTMP kinase, probable t 96.7 0.0014 4.6E-08 53.1 4.1 27 33-59 5-31 (213)
159 1j8m_F SRP54, signal recogniti 96.7 0.014 4.9E-07 49.8 10.6 28 32-59 98-125 (297)
160 3t61_A Gluconokinase; PSI-biol 96.6 0.001 3.4E-08 53.5 3.2 25 32-56 18-42 (202)
161 1xjc_A MOBB protein homolog; s 96.6 0.0016 5.5E-08 50.5 4.2 28 32-59 4-31 (169)
162 3tr0_A Guanylate kinase, GMP k 96.6 0.0012 4E-08 53.2 3.5 24 33-56 8-31 (205)
163 1zuh_A Shikimate kinase; alpha 96.6 0.0013 4.5E-08 51.1 3.6 25 33-57 8-32 (168)
164 1via_A Shikimate kinase; struc 96.6 0.0012 4.1E-08 51.7 3.3 24 34-57 6-29 (175)
165 1uj2_A Uridine-cytidine kinase 96.6 0.0015 5.1E-08 54.6 4.1 29 30-58 20-48 (252)
166 3tqc_A Pantothenate kinase; bi 96.6 0.0022 7.6E-08 55.3 5.2 47 12-58 70-118 (321)
167 2c95_A Adenylate kinase 1; tra 96.6 0.0013 4.5E-08 52.4 3.5 26 32-57 9-34 (196)
168 1ukz_A Uridylate kinase; trans 96.6 0.0017 5.7E-08 52.2 4.2 26 31-56 14-39 (203)
169 2dr3_A UPF0273 protein PH0284; 96.6 0.0016 5.4E-08 54.0 4.1 36 32-67 23-58 (247)
170 1q57_A DNA primase/helicase; d 96.6 0.014 4.9E-07 54.0 10.9 37 31-67 241-278 (503)
171 3cmu_A Protein RECA, recombina 96.6 0.0024 8.1E-08 67.5 6.1 85 31-125 1426-1515(2050)
172 1lvg_A Guanylate kinase, GMP k 96.6 0.00099 3.4E-08 53.5 2.7 25 33-57 5-29 (198)
173 3p32_A Probable GTPase RV1496/ 96.6 0.0043 1.5E-07 54.6 7.1 40 20-59 67-106 (355)
174 2iyv_A Shikimate kinase, SK; t 96.6 0.0011 3.6E-08 52.5 2.8 25 33-57 3-27 (184)
175 3e1s_A Exodeoxyribonuclease V, 96.6 0.01 3.5E-07 55.7 9.8 28 33-60 205-232 (574)
176 1nn5_A Similar to deoxythymidy 96.5 0.0019 6.5E-08 52.3 4.3 28 32-59 9-36 (215)
177 1qf9_A UMP/CMP kinase, protein 96.5 0.0021 7.2E-08 51.0 4.4 26 32-57 6-31 (194)
178 2cdn_A Adenylate kinase; phosp 96.5 0.0018 6.2E-08 51.9 4.0 27 31-57 19-45 (201)
179 2vli_A Antibiotic resistance p 96.5 0.00092 3.2E-08 52.7 2.2 26 33-58 6-31 (183)
180 2jaq_A Deoxyguanosine kinase; 96.5 0.0017 5.8E-08 52.1 3.8 25 34-58 2-26 (205)
181 4gzl_A RAS-related C3 botulinu 96.5 0.0016 5.3E-08 52.5 3.5 52 2-55 2-53 (204)
182 2bwj_A Adenylate kinase 5; pho 96.5 0.0014 4.8E-08 52.4 3.3 25 33-57 13-37 (199)
183 2j41_A Guanylate kinase; GMP, 96.5 0.0016 5.4E-08 52.5 3.6 25 32-56 6-30 (207)
184 1aky_A Adenylate kinase; ATP:A 96.5 0.0016 5.5E-08 53.1 3.7 26 32-57 4-29 (220)
185 4gp7_A Metallophosphoesterase; 96.5 0.0014 4.7E-08 51.2 3.1 21 32-52 9-29 (171)
186 2bdt_A BH3686; alpha-beta prot 96.5 0.0019 6.4E-08 51.3 3.9 22 33-54 3-24 (189)
187 1e6c_A Shikimate kinase; phosp 96.5 0.0013 4.5E-08 51.2 3.0 25 33-57 3-27 (173)
188 1ye8_A Protein THEP1, hypothet 96.5 0.0015 5.3E-08 51.3 3.3 24 34-57 2-25 (178)
189 1y63_A LMAJ004144AAA protein; 96.5 0.0017 5.9E-08 51.3 3.7 24 32-55 10-33 (184)
190 1s96_A Guanylate kinase, GMP k 96.5 0.0014 4.9E-08 53.4 3.2 26 32-57 16-41 (219)
191 3a4m_A L-seryl-tRNA(SEC) kinas 96.5 0.0019 6.4E-08 54.3 4.0 26 32-57 4-29 (260)
192 1rj9_A FTSY, signal recognitio 96.5 0.0027 9.3E-08 54.5 5.0 29 31-59 101-129 (304)
193 2wsm_A Hydrogenase expression/ 96.5 0.0033 1.1E-07 51.1 5.4 41 17-59 17-57 (221)
194 2w0m_A SSO2452; RECA, SSPF, un 96.5 0.0018 6.2E-08 53.1 3.8 35 32-66 23-57 (235)
195 3fwy_A Light-independent proto 96.5 0.0027 9.3E-08 54.8 4.9 34 30-63 46-79 (314)
196 3asz_A Uridine kinase; cytidin 96.5 0.0021 7.3E-08 52.0 4.0 27 31-57 5-31 (211)
197 2hf9_A Probable hydrogenase ni 96.5 0.0051 1.8E-07 50.2 6.4 29 31-59 37-65 (226)
198 2p5t_B PEZT; postsegregational 96.4 0.003 1E-07 52.8 4.9 28 30-57 30-57 (253)
199 2ga8_A Hypothetical 39.9 kDa p 96.4 0.0027 9.2E-08 55.3 4.7 47 13-59 3-51 (359)
200 2xxa_A Signal recognition part 96.4 0.02 7E-07 51.6 10.6 29 31-59 99-127 (433)
201 2wwf_A Thymidilate kinase, put 96.4 0.0018 6.1E-08 52.4 3.4 28 32-59 10-37 (212)
202 2pt5_A Shikimate kinase, SK; a 96.4 0.0023 7.9E-08 49.6 3.8 24 34-57 2-25 (168)
203 1zak_A Adenylate kinase; ATP:A 96.4 0.0016 5.6E-08 53.2 3.0 26 32-57 5-30 (222)
204 1uf9_A TT1252 protein; P-loop, 96.4 0.0022 7.7E-08 51.4 3.8 26 30-55 6-31 (203)
205 1zd8_A GTP:AMP phosphotransfer 96.4 0.0018 6.1E-08 53.1 3.2 26 32-57 7-32 (227)
206 2j37_W Signal recognition part 96.4 0.032 1.1E-06 51.2 11.7 29 31-59 100-128 (504)
207 3foz_A TRNA delta(2)-isopenten 96.4 0.0026 9E-08 54.2 4.2 28 30-57 8-35 (316)
208 1ak2_A Adenylate kinase isoenz 96.4 0.0023 8E-08 52.7 3.8 26 32-57 16-41 (233)
209 3fb4_A Adenylate kinase; psych 96.4 0.0024 8.2E-08 51.8 3.8 24 34-57 2-25 (216)
210 1znw_A Guanylate kinase, GMP k 96.4 0.002 6.9E-08 52.0 3.3 26 32-57 20-45 (207)
211 1cke_A CK, MSSA, protein (cyti 96.4 0.0024 8.1E-08 52.3 3.7 25 33-57 6-30 (227)
212 1z6g_A Guanylate kinase; struc 96.4 0.0016 5.5E-08 53.1 2.7 25 32-56 23-47 (218)
213 2pez_A Bifunctional 3'-phospho 96.3 0.0029 9.8E-08 49.7 4.1 26 32-57 5-30 (179)
214 2z0h_A DTMP kinase, thymidylat 96.3 0.0026 8.7E-08 50.7 3.8 25 34-58 2-26 (197)
215 2qmh_A HPR kinase/phosphorylas 96.3 0.0019 6.4E-08 51.3 2.8 25 32-56 34-58 (205)
216 4a74_A DNA repair and recombin 96.3 0.0026 9E-08 52.1 3.9 26 31-56 24-49 (231)
217 2qt1_A Nicotinamide riboside k 96.3 0.0023 8E-08 51.6 3.5 26 31-56 20-45 (207)
218 3end_A Light-independent proto 96.3 0.0036 1.2E-07 53.9 4.9 39 30-69 39-77 (307)
219 3exa_A TRNA delta(2)-isopenten 96.3 0.0025 8.5E-08 54.5 3.7 24 33-56 4-27 (322)
220 1htw_A HI0065; nucleotide-bind 96.3 0.0029 1E-07 48.6 3.8 26 31-56 32-57 (158)
221 2r6a_A DNAB helicase, replicat 96.3 0.023 7.8E-07 51.8 10.4 36 31-66 202-238 (454)
222 2ck3_D ATP synthase subunit be 96.3 0.021 7.2E-07 51.6 9.8 26 33-58 154-179 (482)
223 2pbr_A DTMP kinase, thymidylat 96.3 0.0027 9.2E-08 50.4 3.8 24 34-57 2-25 (195)
224 1m7g_A Adenylylsulfate kinase; 96.3 0.0033 1.1E-07 50.9 4.2 27 31-57 24-50 (211)
225 3dl0_A Adenylate kinase; phosp 96.3 0.0026 9E-08 51.6 3.6 23 34-56 2-24 (216)
226 1ls1_A Signal recognition part 96.3 0.015 5.1E-07 49.7 8.4 36 31-67 97-132 (295)
227 1np6_A Molybdopterin-guanine d 96.3 0.0037 1.2E-07 48.9 4.2 27 32-58 6-32 (174)
228 1zu4_A FTSY; GTPase, signal re 96.3 0.0081 2.8E-07 51.9 6.7 36 31-67 104-139 (320)
229 2v54_A DTMP kinase, thymidylat 96.3 0.0025 8.4E-08 51.2 3.3 25 32-56 4-28 (204)
230 3be4_A Adenylate kinase; malar 96.2 0.0023 7.8E-08 52.1 3.0 25 33-57 6-30 (217)
231 2eyu_A Twitching motility prot 96.2 0.0041 1.4E-07 52.2 4.6 108 31-153 24-133 (261)
232 3a8t_A Adenylate isopentenyltr 96.2 0.0026 9E-08 55.0 3.4 26 32-57 40-65 (339)
233 4e22_A Cytidylate kinase; P-lo 96.2 0.003 1E-07 52.7 3.6 26 32-57 27-52 (252)
234 2j9r_A Thymidine kinase; TK1, 96.2 0.0073 2.5E-07 48.6 5.6 29 31-59 27-55 (214)
235 3b9q_A Chloroplast SRP recepto 96.2 0.0047 1.6E-07 53.0 4.8 28 31-58 99-126 (302)
236 3crm_A TRNA delta(2)-isopenten 96.2 0.0033 1.1E-07 54.2 3.8 26 32-57 5-30 (323)
237 2fz4_A DNA repair protein RAD2 96.2 0.091 3.1E-06 43.2 12.5 41 11-56 92-132 (237)
238 1gtv_A TMK, thymidylate kinase 96.2 0.0015 5.1E-08 52.9 1.6 25 34-58 2-26 (214)
239 2ehv_A Hypothetical protein PH 96.2 0.0037 1.3E-07 51.9 4.1 24 32-55 30-53 (251)
240 3d3q_A TRNA delta(2)-isopenten 96.2 0.0035 1.2E-07 54.3 3.9 25 33-57 8-32 (340)
241 2orw_A Thymidine kinase; TMTK, 96.2 0.0042 1.4E-07 49.1 4.1 25 33-57 4-28 (184)
242 2if2_A Dephospho-COA kinase; a 96.2 0.003 1E-07 50.7 3.3 21 34-54 3-23 (204)
243 2r8r_A Sensor protein; KDPD, P 96.2 0.0065 2.2E-07 49.3 5.2 28 33-60 7-34 (228)
244 3aez_A Pantothenate kinase; tr 96.1 0.0035 1.2E-07 54.0 3.8 28 30-57 88-115 (312)
245 2jeo_A Uridine-cytidine kinase 96.1 0.0042 1.4E-07 51.6 4.2 26 31-56 24-49 (245)
246 3r20_A Cytidylate kinase; stru 96.1 0.0035 1.2E-07 51.4 3.5 25 33-57 10-34 (233)
247 1jjv_A Dephospho-COA kinase; P 96.1 0.0037 1.3E-07 50.3 3.6 22 33-54 3-24 (206)
248 2xb4_A Adenylate kinase; ATP-b 96.1 0.0041 1.4E-07 50.9 3.7 24 34-57 2-25 (223)
249 2zts_A Putative uncharacterize 96.1 0.0039 1.3E-07 51.7 3.7 26 31-56 29-54 (251)
250 1g8f_A Sulfate adenylyltransfe 96.1 0.0061 2.1E-07 56.0 5.1 50 9-58 372-421 (511)
251 2ffh_A Protein (FFH); SRP54, s 96.0 0.023 7.8E-07 51.0 8.7 29 31-59 97-125 (425)
252 3upu_A ATP-dependent DNA helic 96.0 0.0066 2.2E-07 55.5 5.3 40 19-61 35-74 (459)
253 3ld9_A DTMP kinase, thymidylat 96.0 0.013 4.4E-07 47.7 6.4 29 30-58 19-47 (223)
254 1cr0_A DNA primase/helicase; R 96.0 0.0052 1.8E-07 52.6 4.2 28 32-59 35-62 (296)
255 4eaq_A DTMP kinase, thymidylat 96.0 0.0086 2.9E-07 49.1 5.4 28 31-58 25-52 (229)
256 3lnc_A Guanylate kinase, GMP k 96.0 0.0024 8.3E-08 52.5 2.1 25 32-56 27-52 (231)
257 1vht_A Dephospho-COA kinase; s 96.0 0.0051 1.8E-07 50.0 4.0 23 32-54 4-26 (218)
258 2og2_A Putative signal recogni 95.9 0.0068 2.3E-07 53.2 4.8 28 31-58 156-183 (359)
259 1e4v_A Adenylate kinase; trans 95.9 0.0048 1.6E-07 50.0 3.6 22 35-56 3-24 (214)
260 3ake_A Cytidylate kinase; CMP 95.9 0.0053 1.8E-07 49.4 3.8 24 34-57 4-27 (208)
261 3tif_A Uncharacterized ABC tra 95.9 0.0034 1.2E-07 51.7 2.7 23 32-54 31-53 (235)
262 1sq5_A Pantothenate kinase; P- 95.9 0.011 3.8E-07 50.8 6.0 28 30-57 78-105 (308)
263 1svm_A Large T antigen; AAA+ f 95.9 0.0083 2.8E-07 53.0 5.2 27 30-56 167-193 (377)
264 3nwj_A ATSK2; P loop, shikimat 95.9 0.0035 1.2E-07 52.1 2.7 25 33-57 49-73 (250)
265 4b3f_X DNA-binding protein smu 95.9 0.011 3.9E-07 56.4 6.6 47 16-67 193-239 (646)
266 3llm_A ATP-dependent RNA helic 95.9 0.056 1.9E-06 44.3 10.0 22 33-54 77-98 (235)
267 1yrb_A ATP(GTP)binding protein 95.9 0.0097 3.3E-07 49.8 5.4 27 31-57 13-39 (262)
268 3eph_A TRNA isopentenyltransfe 95.9 0.0054 1.9E-07 54.3 3.8 25 33-57 3-27 (409)
269 2i3b_A HCR-ntpase, human cance 95.9 0.0046 1.6E-07 49.1 3.1 24 34-57 3-26 (189)
270 1p9r_A General secretion pathw 95.9 0.02 6.8E-07 51.4 7.5 29 31-59 166-194 (418)
271 1ltq_A Polynucleotide kinase; 95.9 0.0054 1.8E-07 52.6 3.7 23 33-55 3-25 (301)
272 2grj_A Dephospho-COA kinase; T 95.9 0.007 2.4E-07 48.1 4.1 25 32-56 12-36 (192)
273 1nlf_A Regulatory protein REPA 95.9 0.0084 2.9E-07 50.8 4.8 27 32-58 30-56 (279)
274 2f1r_A Molybdopterin-guanine d 95.8 0.0029 9.9E-08 49.3 1.8 26 33-58 3-28 (171)
275 3cmw_A Protein RECA, recombina 95.8 0.01 3.5E-07 62.0 6.1 85 31-125 382-471 (1706)
276 1fx0_B ATP synthase beta chain 95.8 0.033 1.1E-06 50.6 8.7 35 32-66 165-200 (498)
277 2f6r_A COA synthase, bifunctio 95.8 0.0057 1.9E-07 51.9 3.6 24 31-54 74-97 (281)
278 1a7j_A Phosphoribulokinase; tr 95.8 0.0029 9.9E-08 54.0 1.8 27 31-57 4-30 (290)
279 2onk_A Molybdate/tungstate ABC 95.8 0.0053 1.8E-07 50.7 3.3 23 33-55 25-47 (240)
280 3tqf_A HPR(Ser) kinase; transf 95.8 0.0059 2E-07 47.1 3.2 23 33-55 17-39 (181)
281 2v9p_A Replication protein E1; 95.8 0.005 1.7E-07 52.7 3.2 26 31-56 125-150 (305)
282 3f9v_A Minichromosome maintena 95.8 0.0028 9.7E-08 59.8 1.8 51 7-57 293-352 (595)
283 3zvl_A Bifunctional polynucleo 95.8 0.0049 1.7E-07 55.5 3.3 27 30-56 256-282 (416)
284 2yhs_A FTSY, cell division pro 95.8 0.0081 2.8E-07 54.7 4.6 29 31-59 292-320 (503)
285 3l0o_A Transcription terminati 95.8 0.0012 4.2E-08 57.8 -0.6 38 20-58 164-201 (427)
286 4edh_A DTMP kinase, thymidylat 95.8 0.012 4E-07 47.7 5.2 28 32-59 6-33 (213)
287 2cbz_A Multidrug resistance-as 95.8 0.0044 1.5E-07 51.2 2.7 25 32-56 31-55 (237)
288 2wji_A Ferrous iron transport 95.8 0.0076 2.6E-07 46.4 3.9 22 33-54 4-25 (165)
289 2pcj_A ABC transporter, lipopr 95.7 0.0046 1.6E-07 50.6 2.7 22 33-54 31-52 (224)
290 1mv5_A LMRA, multidrug resista 95.7 0.0056 1.9E-07 50.8 3.1 23 32-54 28-50 (243)
291 3b85_A Phosphate starvation-in 95.7 0.0046 1.6E-07 49.9 2.5 23 33-55 23-45 (208)
292 3hjn_A DTMP kinase, thymidylat 95.7 0.027 9.1E-07 44.9 7.0 33 34-66 2-34 (197)
293 3cmu_A Protein RECA, recombina 95.7 0.012 4.2E-07 62.3 6.1 84 31-124 382-470 (2050)
294 4akg_A Glutathione S-transfera 95.7 0.033 1.1E-06 61.0 9.5 143 33-204 1268-1452(2695)
295 2ged_A SR-beta, signal recogni 95.7 0.0083 2.9E-07 47.4 3.9 25 31-55 47-71 (193)
296 1b0u_A Histidine permease; ABC 95.7 0.005 1.7E-07 51.7 2.7 24 32-55 32-55 (262)
297 2dyk_A GTP-binding protein; GT 95.7 0.0082 2.8E-07 45.7 3.7 23 33-55 2-24 (161)
298 3bgw_A DNAB-like replicative h 95.7 0.012 4.2E-07 53.4 5.3 36 31-66 196-231 (444)
299 2zej_A Dardarin, leucine-rich 95.6 0.0056 1.9E-07 48.2 2.6 21 34-54 4-24 (184)
300 2qe7_A ATP synthase subunit al 95.6 0.015 5.3E-07 52.7 5.7 25 32-56 162-187 (502)
301 2zu0_C Probable ATP-dependent 95.6 0.0067 2.3E-07 51.0 3.2 24 32-55 46-69 (267)
302 1h65_A Chloroplast outer envel 95.6 0.016 5.3E-07 48.8 5.5 31 25-55 32-62 (270)
303 1tf7_A KAIC; homohexamer, hexa 95.6 0.026 8.7E-07 52.5 7.4 36 31-66 280-315 (525)
304 1oix_A RAS-related protein RAB 95.6 0.0075 2.6E-07 47.8 3.3 24 32-55 29-52 (191)
305 2gks_A Bifunctional SAT/APS ki 95.6 0.017 5.9E-07 53.8 6.2 50 9-58 349-398 (546)
306 2olj_A Amino acid ABC transpor 95.6 0.0057 1.9E-07 51.3 2.7 24 32-55 50-73 (263)
307 3gfo_A Cobalt import ATP-bindi 95.6 0.006 2.1E-07 51.5 2.8 23 32-54 34-56 (275)
308 3lda_A DNA repair protein RAD5 95.6 0.012 4.2E-07 52.4 4.9 26 31-56 177-202 (400)
309 3vkw_A Replicase large subunit 95.6 0.066 2.3E-06 48.1 9.6 25 30-54 159-183 (446)
310 2d2e_A SUFC protein; ABC-ATPas 95.6 0.0076 2.6E-07 50.2 3.4 23 33-55 30-52 (250)
311 2ocp_A DGK, deoxyguanosine kin 95.6 0.0085 2.9E-07 49.5 3.7 26 32-57 2-27 (241)
312 2ghi_A Transport protein; mult 95.6 0.0059 2E-07 51.1 2.7 25 32-56 46-70 (260)
313 3cr8_A Sulfate adenylyltranfer 95.5 0.011 3.6E-07 55.2 4.6 49 11-59 348-396 (552)
314 1tq4_A IIGP1, interferon-induc 95.5 0.0067 2.3E-07 54.3 3.1 24 31-54 68-91 (413)
315 2f9l_A RAB11B, member RAS onco 95.5 0.0078 2.7E-07 48.0 3.3 23 33-55 6-28 (199)
316 2qm8_A GTPase/ATPase; G protei 95.5 0.02 6.9E-07 49.9 6.1 28 30-57 53-80 (337)
317 3lv8_A DTMP kinase, thymidylat 95.5 0.022 7.5E-07 46.8 6.0 28 32-59 27-54 (236)
318 4tmk_A Protein (thymidylate ki 95.5 0.024 8.2E-07 45.8 6.1 28 33-60 4-31 (213)
319 1ji0_A ABC transporter; ATP bi 95.5 0.0067 2.3E-07 50.2 2.8 22 33-54 33-54 (240)
320 1fzq_A ADP-ribosylation factor 95.5 0.012 4.1E-07 46.1 4.2 26 30-55 14-39 (181)
321 1g6h_A High-affinity branched- 95.5 0.0067 2.3E-07 50.7 2.8 24 32-55 33-56 (257)
322 2ixe_A Antigen peptide transpo 95.5 0.0063 2.2E-07 51.3 2.7 24 32-55 45-68 (271)
323 1vpl_A ABC transporter, ATP-bi 95.5 0.0063 2.2E-07 50.8 2.7 24 32-55 41-64 (256)
324 2ff7_A Alpha-hemolysin translo 95.5 0.0068 2.3E-07 50.4 2.8 23 33-55 36-58 (247)
325 2gk6_A Regulator of nonsense t 95.5 0.043 1.5E-06 52.2 8.7 35 33-67 196-230 (624)
326 1sgw_A Putative ABC transporte 95.5 0.0057 1.9E-07 49.6 2.2 23 33-55 36-58 (214)
327 1c9k_A COBU, adenosylcobinamid 95.5 0.0068 2.3E-07 47.4 2.6 21 35-55 2-22 (180)
328 4g1u_C Hemin import ATP-bindin 95.5 0.0069 2.4E-07 50.9 2.8 23 32-54 37-59 (266)
329 2p67_A LAO/AO transport system 95.5 0.021 7.2E-07 49.9 6.0 29 30-58 54-82 (341)
330 4hlc_A DTMP kinase, thymidylat 95.5 0.017 5.8E-07 46.4 5.0 28 33-60 3-30 (205)
331 2yv5_A YJEQ protein; hydrolase 95.5 0.012 4.2E-07 50.4 4.5 31 18-53 156-186 (302)
332 3iqw_A Tail-anchored protein t 95.5 0.018 6.3E-07 50.0 5.5 37 30-66 14-50 (334)
333 3cmw_A Protein RECA, recombina 95.4 0.016 5.3E-07 60.7 5.8 84 31-124 1430-1518(1706)
334 2wjg_A FEOB, ferrous iron tran 95.4 0.011 3.9E-07 46.4 3.9 24 32-55 7-30 (188)
335 3io3_A DEHA2D07832P; chaperone 95.4 0.017 5.7E-07 50.6 5.2 38 29-66 15-54 (348)
336 3sop_A Neuronal-specific septi 95.4 0.0082 2.8E-07 50.6 3.1 23 34-56 4-26 (270)
337 3v9p_A DTMP kinase, thymidylat 95.4 0.016 5.5E-07 47.3 4.8 28 32-59 25-52 (227)
338 1z2a_A RAS-related protein RAB 95.4 0.013 4.4E-07 44.9 4.1 24 32-55 5-28 (168)
339 2ewv_A Twitching motility prot 95.4 0.014 4.6E-07 51.7 4.6 108 31-151 135-242 (372)
340 2qi9_C Vitamin B12 import ATP- 95.4 0.0078 2.7E-07 50.0 2.8 24 33-56 27-50 (249)
341 2yz2_A Putative ABC transporte 95.4 0.0075 2.6E-07 50.7 2.7 23 32-54 33-55 (266)
342 2v3c_C SRP54, signal recogniti 95.4 0.0059 2E-07 55.1 2.1 28 32-59 99-126 (432)
343 2ce2_X GTPase HRAS; signaling 95.3 0.0097 3.3E-07 45.4 3.1 22 34-55 5-26 (166)
344 2www_A Methylmalonic aciduria 95.3 0.017 5.9E-07 50.6 5.0 27 31-57 73-99 (349)
345 3ug7_A Arsenical pump-driving 95.3 0.024 8.1E-07 49.7 5.9 32 29-60 23-54 (349)
346 3def_A T7I23.11 protein; chlor 95.3 0.022 7.4E-07 47.7 5.5 36 20-55 24-59 (262)
347 1cp2_A CP2, nitrogenase iron p 95.3 0.019 6.4E-07 48.2 5.0 36 33-69 2-37 (269)
348 1q3t_A Cytidylate kinase; nucl 95.3 0.013 4.4E-07 48.3 3.8 27 31-57 15-41 (236)
349 2ihy_A ABC transporter, ATP-bi 95.3 0.0086 2.9E-07 50.7 2.8 24 32-55 47-70 (279)
350 2nzj_A GTP-binding protein REM 95.3 0.015 5E-07 45.0 4.0 23 33-55 5-27 (175)
351 2nq2_C Hypothetical ABC transp 95.3 0.0086 2.9E-07 49.9 2.8 23 33-55 32-54 (253)
352 1kao_A RAP2A; GTP-binding prot 95.3 0.011 3.8E-07 45.2 3.3 23 33-55 4-26 (167)
353 3kta_A Chromosome segregation 95.3 0.011 3.6E-07 46.5 3.2 25 33-57 27-51 (182)
354 3fvq_A Fe(3+) IONS import ATP- 95.3 0.0092 3.2E-07 52.3 3.0 23 32-54 30-52 (359)
355 3vr4_D V-type sodium ATPase su 95.2 0.022 7.7E-07 51.1 5.5 26 33-58 152-177 (465)
356 1nrj_B SR-beta, signal recogni 95.2 0.012 4.2E-07 47.5 3.6 25 31-55 11-35 (218)
357 2iut_A DNA translocase FTSK; n 95.2 0.15 5E-06 47.4 11.0 65 116-180 344-420 (574)
358 2ck3_A ATP synthase subunit al 95.2 0.037 1.3E-06 50.4 6.9 25 33-57 163-188 (510)
359 1m8p_A Sulfate adenylyltransfe 95.2 0.021 7.3E-07 53.5 5.5 28 31-58 395-422 (573)
360 1z08_A RAS-related protein RAB 95.2 0.012 4.1E-07 45.3 3.3 23 33-55 7-29 (170)
361 1r8s_A ADP-ribosylation factor 95.2 0.013 4.4E-07 44.8 3.4 21 35-55 3-23 (164)
362 2lkc_A Translation initiation 95.2 0.013 4.5E-07 45.5 3.5 25 31-55 7-31 (178)
363 1ek0_A Protein (GTP-binding pr 95.2 0.012 4.2E-07 45.1 3.3 22 34-55 5-26 (170)
364 2fn4_A P23, RAS-related protei 95.2 0.018 6.1E-07 44.7 4.3 26 30-55 7-32 (181)
365 1u8z_A RAS-related protein RAL 95.2 0.012 4.2E-07 44.9 3.3 23 33-55 5-27 (168)
366 1wms_A RAB-9, RAB9, RAS-relate 95.2 0.012 4.2E-07 45.6 3.3 24 32-55 7-30 (177)
367 1z0j_A RAB-22, RAS-related pro 95.1 0.013 4.4E-07 45.1 3.3 23 33-55 7-29 (170)
368 1g16_A RAS-related protein SEC 95.1 0.012 4.1E-07 45.2 3.1 23 33-55 4-26 (170)
369 3q85_A GTP-binding protein REM 95.1 0.012 4.2E-07 45.2 3.1 21 34-54 4-24 (169)
370 1ky3_A GTP-binding protein YPT 95.1 0.018 6E-07 44.8 4.0 25 31-55 7-31 (182)
371 2vp4_A Deoxynucleoside kinase; 95.1 0.01 3.4E-07 48.7 2.7 26 30-55 18-43 (230)
372 2yyz_A Sugar ABC transporter, 95.1 0.012 4E-07 51.7 3.2 23 32-54 29-51 (359)
373 3ihw_A Centg3; RAS, centaurin, 95.1 0.013 4.5E-07 46.1 3.3 25 31-55 19-43 (184)
374 1z47_A CYSA, putative ABC-tran 95.1 0.013 4.3E-07 51.4 3.4 23 32-54 41-63 (355)
375 1c1y_A RAS-related protein RAP 95.1 0.014 4.7E-07 44.7 3.3 23 33-55 4-26 (167)
376 1nij_A Hypothetical protein YJ 95.1 0.012 4.2E-07 50.8 3.3 26 31-56 3-28 (318)
377 3con_A GTPase NRAS; structural 95.1 0.013 4.5E-07 46.1 3.3 23 33-55 22-44 (190)
378 2gj8_A MNME, tRNA modification 95.1 0.014 4.9E-07 45.3 3.4 23 33-55 5-27 (172)
379 1zj6_A ADP-ribosylation factor 95.1 0.029 1E-06 44.0 5.3 34 18-54 5-38 (187)
380 2it1_A 362AA long hypothetical 95.1 0.012 4.1E-07 51.7 3.2 23 32-54 29-51 (362)
381 3zq6_A Putative arsenical pump 95.1 0.015 5.1E-07 50.4 3.8 34 32-65 14-47 (324)
382 3q72_A GTP-binding protein RAD 95.1 0.011 3.9E-07 45.2 2.8 21 34-54 4-24 (166)
383 2pjz_A Hypothetical protein ST 95.1 0.011 3.8E-07 49.5 2.8 24 33-56 31-54 (263)
384 3rlf_A Maltose/maltodextrin im 95.1 0.012 4.2E-07 51.9 3.2 23 32-54 29-51 (381)
385 1svi_A GTP-binding protein YSX 95.1 0.014 4.9E-07 46.1 3.4 25 31-55 22-46 (195)
386 3nh6_A ATP-binding cassette SU 95.1 0.0082 2.8E-07 51.5 2.0 23 32-54 80-102 (306)
387 2cjw_A GTP-binding protein GEM 95.0 0.013 4.5E-07 46.4 3.1 22 33-54 7-28 (192)
388 2erx_A GTP-binding protein DI- 95.0 0.018 6.3E-07 44.2 3.9 23 33-55 4-26 (172)
389 1v43_A Sugar-binding transport 95.0 0.013 4.4E-07 51.7 3.2 23 32-54 37-59 (372)
390 2bbs_A Cystic fibrosis transme 95.0 0.01 3.5E-07 50.5 2.5 24 32-55 64-87 (290)
391 1r2q_A RAS-related protein RAB 95.0 0.015 5E-07 44.7 3.3 23 33-55 7-29 (170)
392 1u0l_A Probable GTPase ENGC; p 95.0 0.02 6.7E-07 49.1 4.2 33 18-55 160-192 (301)
393 1p5z_B DCK, deoxycytidine kina 95.0 0.0075 2.6E-07 50.6 1.6 27 31-57 23-49 (263)
394 2axn_A 6-phosphofructo-2-kinas 95.0 0.023 7.9E-07 52.6 5.0 29 31-59 34-62 (520)
395 1upt_A ARL1, ADP-ribosylation 95.0 0.02 6.8E-07 44.0 4.0 24 32-55 7-30 (171)
396 3c5c_A RAS-like protein 12; GD 95.0 0.015 5.2E-07 45.8 3.3 24 32-55 21-44 (187)
397 3d31_A Sulfate/molybdate ABC t 95.0 0.011 3.7E-07 51.7 2.5 24 32-55 26-49 (348)
398 1g29_1 MALK, maltose transport 94.9 0.015 5.1E-07 51.4 3.4 22 33-54 30-51 (372)
399 1z0f_A RAB14, member RAS oncog 94.9 0.016 5.5E-07 44.9 3.3 24 32-55 15-38 (179)
400 3tui_C Methionine import ATP-b 94.9 0.014 4.9E-07 51.1 3.2 23 32-54 54-76 (366)
401 3tmk_A Thymidylate kinase; pho 94.9 0.019 6.5E-07 46.5 3.7 27 32-58 5-31 (216)
402 2cxx_A Probable GTP-binding pr 94.9 0.014 4.6E-07 45.9 2.8 22 34-55 3-24 (190)
403 1m7b_A RND3/RHOE small GTP-bin 94.9 0.02 7E-07 44.8 3.9 24 32-55 7-30 (184)
404 2y8e_A RAB-protein 6, GH09086P 94.9 0.015 5.2E-07 45.0 3.1 23 33-55 15-37 (179)
405 1moz_A ARL1, ADP-ribosylation 94.9 0.02 6.7E-07 44.7 3.7 24 31-54 17-40 (183)
406 3bc1_A RAS-related protein RAB 94.9 0.017 5.6E-07 45.5 3.3 24 32-55 11-34 (195)
407 1m2o_B GTP-binding protein SAR 94.9 0.016 5.3E-07 45.9 3.1 23 33-55 24-46 (190)
408 2afh_E Nitrogenase iron protei 94.9 0.025 8.5E-07 48.1 4.6 36 33-69 3-38 (289)
409 4dsu_A GTPase KRAS, isoform 2B 94.9 0.017 5.7E-07 45.3 3.3 23 33-55 5-27 (189)
410 3pqc_A Probable GTP-binding pr 94.9 0.016 5.6E-07 45.6 3.2 24 32-55 23-46 (195)
411 2oil_A CATX-8, RAS-related pro 94.9 0.017 5.8E-07 45.6 3.3 24 32-55 25-48 (193)
412 2iwr_A Centaurin gamma 1; ANK 94.8 0.013 4.3E-07 45.6 2.4 23 33-55 8-30 (178)
413 2r9v_A ATP synthase subunit al 94.8 0.042 1.4E-06 50.0 6.0 24 33-56 176-200 (515)
414 2hxs_A RAB-26, RAS-related pro 94.8 0.027 9.3E-07 43.6 4.3 24 32-55 6-29 (178)
415 1fx0_A ATP synthase alpha chai 94.8 0.021 7.3E-07 51.9 4.1 25 32-56 163-188 (507)
416 2efe_B Small GTP-binding prote 94.8 0.018 6.1E-07 44.8 3.3 23 33-55 13-35 (181)
417 3fdi_A Uncharacterized protein 94.8 0.02 6.8E-07 45.9 3.6 27 33-59 7-33 (201)
418 2bme_A RAB4A, RAS-related prot 94.8 0.017 5.7E-07 45.3 3.1 24 32-55 10-33 (186)
419 3tw8_B RAS-related protein RAB 94.8 0.021 7.3E-07 44.3 3.6 24 31-54 8-31 (181)
420 1lw7_A Transcriptional regulat 94.8 0.018 6.1E-07 50.9 3.5 26 32-57 170-195 (365)
421 1f2t_A RAD50 ABC-ATPase; DNA d 94.8 0.022 7.7E-07 43.1 3.6 24 33-56 24-47 (149)
422 2g6b_A RAS-related protein RAB 94.8 0.019 6.4E-07 44.6 3.3 24 32-55 10-33 (180)
423 1pui_A ENGB, probable GTP-bind 94.8 0.01 3.5E-07 47.6 1.8 24 31-54 25-48 (210)
424 2a9k_A RAS-related protein RAL 94.7 0.019 6.5E-07 44.9 3.3 24 32-55 18-41 (187)
425 1mh1_A RAC1; GTP-binding, GTPa 94.7 0.019 6.5E-07 44.9 3.3 23 33-55 6-28 (186)
426 2g3y_A GTP-binding protein GEM 94.7 0.018 6E-07 46.6 3.1 21 33-53 38-58 (211)
427 3t5g_A GTP-binding protein RHE 94.7 0.019 6.6E-07 44.7 3.3 24 32-55 6-29 (181)
428 3clv_A RAB5 protein, putative; 94.7 0.019 6.4E-07 45.6 3.3 23 33-55 8-30 (208)
429 1oxx_K GLCV, glucose, ABC tran 94.7 0.01 3.6E-07 51.9 1.8 23 32-54 31-53 (353)
430 1vg8_A RAS-related protein RAB 94.7 0.025 8.7E-07 45.1 4.0 25 31-55 7-31 (207)
431 1ega_A Protein (GTP-binding pr 94.7 0.019 6.6E-07 49.2 3.5 25 31-55 7-31 (301)
432 3bwd_D RAC-like GTP-binding pr 94.7 0.02 6.7E-07 44.6 3.3 23 33-55 9-31 (182)
433 3dz8_A RAS-related protein RAB 94.7 0.019 6.6E-07 45.3 3.3 23 33-55 24-46 (191)
434 1gwn_A RHO-related GTP-binding 94.7 0.025 8.4E-07 45.4 3.9 25 31-55 27-51 (205)
435 2gf9_A RAS-related protein RAB 94.7 0.02 6.8E-07 45.1 3.3 24 32-55 22-45 (189)
436 3kkq_A RAS-related protein M-R 94.7 0.032 1.1E-06 43.5 4.5 25 31-55 17-41 (183)
437 3gd7_A Fusion complex of cysti 94.7 0.016 5.6E-07 51.4 3.0 23 32-54 47-69 (390)
438 4dkx_A RAS-related protein RAB 94.7 0.02 6.8E-07 46.4 3.3 22 34-55 15-36 (216)
439 4f4c_A Multidrug resistance pr 94.7 0.05 1.7E-06 56.3 7.0 23 32-54 1105-1127(1321)
440 2atv_A RERG, RAS-like estrogen 94.7 0.02 6.8E-07 45.4 3.3 24 32-55 28-51 (196)
441 1zd9_A ADP-ribosylation factor 94.7 0.02 6.9E-07 45.0 3.3 23 33-55 23-45 (188)
442 2wjy_A Regulator of nonsense t 94.6 0.092 3.1E-06 51.3 8.4 34 33-66 372-405 (800)
443 2a5j_A RAS-related protein RAB 94.6 0.021 7.1E-07 45.1 3.3 23 33-55 22-44 (191)
444 2ew1_A RAS-related protein RAB 94.6 0.019 6.6E-07 45.9 3.1 24 32-55 26-49 (201)
445 3cbq_A GTP-binding protein REM 94.6 0.02 6.9E-07 45.5 3.2 23 31-53 22-44 (195)
446 3kjh_A CO dehydrogenase/acetyl 94.6 0.028 9.5E-07 46.5 4.2 34 35-69 3-36 (254)
447 1z06_A RAS-related protein RAB 94.6 0.021 7.1E-07 45.0 3.3 24 32-55 20-43 (189)
448 1xx6_A Thymidine kinase; NESG, 94.6 0.04 1.4E-06 43.6 4.9 28 32-59 8-35 (191)
449 3lxx_A GTPase IMAP family memb 94.6 0.025 8.7E-07 46.5 3.9 25 31-55 28-52 (239)
450 2fg5_A RAB-22B, RAS-related pr 94.6 0.02 6.7E-07 45.3 3.1 24 32-55 23-46 (192)
451 2h92_A Cytidylate kinase; ross 94.6 0.019 6.6E-07 46.5 3.1 25 33-57 4-28 (219)
452 2rcn_A Probable GTPase ENGC; Y 94.6 0.02 6.9E-07 50.1 3.3 23 33-55 216-238 (358)
453 4bas_A ADP-ribosylation factor 94.6 0.025 8.5E-07 44.8 3.7 26 30-55 15-40 (199)
454 2bov_A RAla, RAS-related prote 94.6 0.032 1.1E-06 44.4 4.4 24 32-55 14-37 (206)
455 3oaa_A ATP synthase subunit al 94.6 0.052 1.8E-06 49.3 6.0 23 33-55 163-186 (513)
456 3iev_A GTP-binding protein ERA 94.6 0.025 8.4E-07 48.7 3.8 26 30-55 8-33 (308)
457 3reg_A RHO-like small GTPase; 94.6 0.022 7.4E-07 45.1 3.3 24 32-55 23-46 (194)
458 2c61_A A-type ATP synthase non 94.6 0.031 1.1E-06 50.4 4.6 26 33-58 153-178 (469)
459 2gza_A Type IV secretion syste 94.5 0.018 6.1E-07 50.8 2.9 25 33-57 176-200 (361)
460 1zbd_A Rabphilin-3A; G protein 94.5 0.021 7.2E-07 45.5 3.1 23 33-55 9-31 (203)
461 3oes_A GTPase rhebl1; small GT 94.5 0.021 7.2E-07 45.5 3.1 25 31-55 23-47 (201)
462 2xau_A PRE-mRNA-splicing facto 94.5 0.24 8.2E-06 48.3 10.9 23 33-55 110-132 (773)
463 2p5s_A RAS and EF-hand domain 94.5 0.023 7.9E-07 45.2 3.3 24 32-55 28-51 (199)
464 2j1l_A RHO-related GTP-binding 94.5 0.028 9.7E-07 45.3 3.8 24 32-55 34-57 (214)
465 2fh5_B SR-beta, signal recogni 94.5 0.023 8E-07 45.7 3.3 24 32-55 7-30 (214)
466 3tkl_A RAS-related protein RAB 94.5 0.023 8E-07 44.8 3.3 24 32-55 16-39 (196)
467 2qu8_A Putative nucleolar GTP- 94.5 0.027 9.2E-07 45.9 3.7 26 30-55 27-52 (228)
468 2woo_A ATPase GET3; tail-ancho 94.5 0.049 1.7E-06 47.3 5.5 35 30-64 17-51 (329)
469 2qnr_A Septin-2, protein NEDD5 94.4 0.017 5.9E-07 49.4 2.5 22 33-54 19-40 (301)
470 1f6b_A SAR1; gtpases, N-termin 94.4 0.021 7.3E-07 45.4 2.9 22 33-54 26-47 (198)
471 1x3s_A RAS-related protein RAB 94.4 0.024 8.3E-07 44.6 3.3 23 33-55 16-38 (195)
472 1x6v_B Bifunctional 3'-phospho 94.4 0.028 9.6E-07 52.9 4.1 27 31-57 51-77 (630)
473 3mfy_A V-type ATP synthase alp 94.4 0.099 3.4E-06 48.1 7.5 23 33-55 228-250 (588)
474 2woj_A ATPase GET3; tail-ancho 94.4 0.044 1.5E-06 48.1 5.1 36 30-65 16-53 (354)
475 2bcg_Y Protein YP2, GTP-bindin 94.4 0.023 7.9E-07 45.4 3.1 24 32-55 8-31 (206)
476 1bif_A 6-phosphofructo-2-kinas 94.4 0.039 1.3E-06 50.5 4.9 27 32-58 39-65 (469)
477 2gf0_A GTP-binding protein DI- 94.4 0.033 1.1E-06 44.0 3.9 24 32-55 8-31 (199)
478 3t1o_A Gliding protein MGLA; G 94.3 0.026 9E-07 44.5 3.3 24 32-55 14-37 (198)
479 2o52_A RAS-related protein RAB 94.3 0.023 7.9E-07 45.3 2.9 24 32-55 25-48 (200)
480 3gqb_B V-type ATP synthase bet 94.3 0.092 3.1E-06 47.2 7.0 26 33-58 148-173 (464)
481 3cph_A RAS-related protein SEC 94.3 0.026 9E-07 45.2 3.3 24 32-55 20-43 (213)
482 2h17_A ADP-ribosylation factor 94.3 0.021 7.1E-07 44.6 2.5 24 32-55 21-44 (181)
483 2q3h_A RAS homolog gene family 94.3 0.025 8.7E-07 44.9 3.1 24 32-55 20-43 (201)
484 4f4c_A Multidrug resistance pr 94.3 0.063 2.2E-06 55.6 6.6 24 32-55 444-467 (1321)
485 2il1_A RAB12; G-protein, GDP, 94.2 0.025 8.6E-07 44.7 3.0 23 33-55 27-49 (192)
486 2fv8_A H6, RHO-related GTP-bin 94.2 0.026 8.9E-07 45.2 3.1 24 32-55 25-48 (207)
487 4dzz_A Plasmid partitioning pr 94.2 0.043 1.5E-06 43.8 4.4 36 33-69 2-38 (206)
488 1ksh_A ARF-like protein 2; sma 94.2 0.033 1.1E-06 43.6 3.5 25 31-55 17-41 (186)
489 2xzl_A ATP-dependent helicase 94.2 0.091 3.1E-06 51.4 7.2 25 33-57 376-400 (802)
490 2qag_B Septin-6, protein NEDD5 94.2 0.024 8.1E-07 50.8 2.8 21 35-55 45-65 (427)
491 2b6h_A ADP-ribosylation factor 94.2 0.035 1.2E-06 43.9 3.6 23 32-54 29-51 (192)
492 2atx_A Small GTP binding prote 94.1 0.028 9.7E-07 44.3 3.1 23 33-55 19-41 (194)
493 2pt7_A CAG-ALFA; ATPase, prote 94.1 0.024 8.1E-07 49.3 2.8 85 33-131 172-256 (330)
494 3q3j_B RHO-related GTP-binding 94.1 0.03 1E-06 45.2 3.3 23 33-55 28-50 (214)
495 1wf3_A GTP-binding protein; GT 94.1 0.032 1.1E-06 47.8 3.5 25 31-55 6-30 (301)
496 2hup_A RAS-related protein RAB 94.1 0.029 9.8E-07 44.8 3.1 24 32-55 29-52 (201)
497 2gco_A H9, RHO-related GTP-bin 94.1 0.03 1E-06 44.6 3.1 24 32-55 25-48 (201)
498 3gmt_A Adenylate kinase; ssgci 94.1 0.035 1.2E-06 45.2 3.5 24 34-57 10-33 (230)
499 2fu5_C RAS-related protein RAB 94.1 0.017 5.7E-07 45.2 1.6 24 32-55 8-31 (183)
500 1ko7_A HPR kinase/phosphatase; 94.1 0.031 1.1E-06 47.8 3.3 23 33-55 145-167 (314)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=1.9e-39 Score=306.08 Aligned_cols=300 Identities=15% Similarity=0.096 Sum_probs=219.8
Q ss_pred ccccHHHHHHHHHHhcC-CCCeEEEEEEcCCCCcHHHHHHHHHH----HhcCCCcceeEeeeccccccCCCcHHHHHHHH
Q 045677 12 VGMESRLEKLKFLMCTG-SNDVRTIGIWGMGGLGKTTLARVVYD----LMSHEFDGSSFLADVRERCDKEGSVISLQKQL 86 (352)
Q Consensus 12 vGR~~~l~~l~~~l~~~-~~~~~~v~I~G~~GiGKT~La~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 86 (352)
|||+.++++|.++|... .+..++|.|+|+||+||||||.++++ .++.+|+..+|+. ++.... .....+...+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~-vs~~~~--~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLK-DSGTAP--KSTFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEE-CCCCST--THHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEE-ECCCCC--CCHHHHHHHH
Confidence 49999999999999754 33579999999999999999999996 5788898888884 433221 2237788888
Q ss_pred HHHHhcccC-C-----CccchhhhHHHHHhhhCCc-eEEEEEeCCCChhhhhhhhCCCCCCCCCceEEEEeCchhHhhhc
Q 045677 87 LSDLLMLAD-N-----SIRNVYDGVNMIGSRLRHK-KVLLLIDDVADVEQLRGLFGKRDWFGLGSMIIITTRDEHLLKLH 159 (352)
Q Consensus 87 ~~~~~~~~~-~-----~~~~~~~~~~~~~~~l~~~-~~llvlDd~~~~~~~~~l~~~~~~~~~~~~iiitsr~~~~~~~~ 159 (352)
+..+..... . ...+...+...+.+.+.++ ++||||||+|+.+.+ .+.. ..+++||||||+..+...+
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~ 281 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNAA 281 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGGC
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCCHHHHHHc
Confidence 888765422 1 1123455678889999996 999999999998765 2221 2689999999998887765
Q ss_pred C-cccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchhHHHHHHhhcCCChhHHHHHHHH-HccCC
Q 045677 160 R-VEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLAVDVLVSFLFGRPVDQWRSTQER-LKRDP 237 (352)
Q Consensus 160 ~-~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~~l~~~~~~~~~~~~~~-~~~~~ 237 (352)
. ....+.|++|+.+++++||.+.++.... .+..++...+|+++|+|+||||+.+|+.++.+. ++|...+.. +....
T Consensus 282 ~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~-w~~~~~l~~~l~~~~ 359 (549)
T 2a5y_B 282 SQTCEFIEVTSLEIDECYDFLEAYGMPMPV-GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT-FEKMAQLNNKLESRG 359 (549)
T ss_dssp CSCEEEEECCCCCHHHHHHHHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS-HHHHHHHHHHHHHHC
T ss_pred CCCCeEEECCCCCHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHhCCChHHHHHHHHHhccch-HHHHHHhHHHhhccc
Confidence 4 3467999999999999999999765432 245677899999999999999999999987763 444333322 11111
Q ss_pred chhHHHHHHhhhccCcHhhhhhhh-----------hhccCCCCCCHHHHHHHHHhc--CCC-----------chhchHHH
Q 045677 238 ENKILGILQISFDGLKEAEKNIFL-----------DVACFYKWENRDYVSKILDSC--GFD-----------PIIGISVL 293 (352)
Q Consensus 238 ~~~~~~~l~~~~~~L~~~~~~~l~-----------~ls~~~~~~~~~~l~~~~~~~--~~~-----------~~~~l~~L 293 (352)
...+..++..+|+.|++..+.||. +||+||+++..+ ..+|.+. |+. ...++++|
T Consensus 360 ~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~L 437 (549)
T 2a5y_B 360 LVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVADRLKRL 437 (549)
T ss_dssp SSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHHHHHHHT
T ss_pred HHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee--eeeeeeeccceeccCCCCCCHHHHHHHHHHH
Confidence 233444455555555555555555 999999887766 5677776 332 23479999
Q ss_pred hhccceeecCC---CceehhHHHHHHHHHHHhhc
Q 045677 294 IEKSLLTVREN---DRLWMHDLLQEMGQQIVRRQ 324 (352)
Q Consensus 294 ~~~~li~~~~~---~~~~~H~lir~~~~~~~~~~ 324 (352)
++++||+.... ..|+||+++|+|+++.+.++
T Consensus 438 ~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~ 471 (549)
T 2a5y_B 438 SKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQ 471 (549)
T ss_dssp TTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTH
T ss_pred HHcCCeeEecCCCceEEEeChHHHHHHHHHHHHH
Confidence 99999997643 35999999999999766554
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.4e-37 Score=320.77 Aligned_cols=309 Identities=20% Similarity=0.246 Sum_probs=245.4
Q ss_pred CCCCCCcCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHH---hcCCCcceeEeeeccccccCCCcH
Q 045677 3 SELEIPKELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDL---MSHEFDGSSFLADVRERCDKEGSV 79 (352)
Q Consensus 3 ~~~~~~~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 79 (352)
..|..+..||||+.++++|.++|...++..++|.|+|+||+||||||.+++++ ...+|...+||..+..... . ..
T Consensus 118 ~~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~-~~ 195 (1249)
T 3sfz_A 118 GVPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDK-S-GL 195 (1249)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCH-H-HH
T ss_pred CCCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCc-h-HH
Confidence 35667788999999999999999765667899999999999999999999986 4566777776665544211 1 11
Q ss_pred HHHHHHHHHHHhcccC---CCccchhhhHHHHHhhhCCc--eEEEEEeCCCChhhhhhhhCCCCCCCCCceEEEEeCchh
Q 045677 80 ISLQKQLLSDLLMLAD---NSIRNVYDGVNMIGSRLRHK--KVLLLIDDVADVEQLRGLFGKRDWFGLGSMIIITTRDEH 154 (352)
Q Consensus 80 ~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~--~~llvlDd~~~~~~~~~l~~~~~~~~~~~~iiitsr~~~ 154 (352)
...+..++..+..... ........+...++..+.++ ++||||||+|+...+..+ ..+++||||||+..
T Consensus 196 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~ 268 (1249)
T 3sfz_A 196 LMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKS 268 (1249)
T ss_dssp HHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTT
T ss_pred HHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHH
Confidence 3334445555443221 22356677788888888876 999999999998877664 46889999999987
Q ss_pred Hhhh-cCcccEEecCC-CCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchhHHHHHHhhcCCChhHHHHHHHH
Q 045677 155 LLKL-HRVEEVYKLEA-LNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLAVDVLVSFLFGRPVDQWRSTQER 232 (352)
Q Consensus 155 ~~~~-~~~~~~~~l~~-l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~~l~~~~~~~~~~~~~~ 232 (352)
+... ......+.+.+ |+.+|++++|...+.... +..++...+|+++|+|+||||+.+|.+++.++ ..|..+++.
T Consensus 269 ~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~---~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~ 344 (1249)
T 3sfz_A 269 VTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKK---EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQ 344 (1249)
T ss_dssp TTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCS---TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHH
T ss_pred HHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCCh---hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHH
Confidence 7643 34556788986 999999999998773322 22345688999999999999999999998876 578888888
Q ss_pred HccCC-----------chhHHHHHHhhhccCcHhhhhhhhhhccCCCC--CCHHHHHHHHHhcCCCchhchHHHhhccce
Q 045677 233 LKRDP-----------ENKILGILQISFDGLKEAEKNIFLDVACFYKW--ENRDYVSKILDSCGFDPIIGISVLIEKSLL 299 (352)
Q Consensus 233 ~~~~~-----------~~~~~~~l~~~~~~L~~~~~~~l~~ls~~~~~--~~~~~l~~~~~~~~~~~~~~l~~L~~~~li 299 (352)
+.... ...+..++..+|+.|+++++.||.+||+||++ ++.+.+..+|+.++......+++|++++||
T Consensus 345 l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl~ 424 (1249)
T 3sfz_A 345 LQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLL 424 (1249)
T ss_dssp HHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSC
T ss_pred HhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccce
Confidence 75532 25688999999999999999999999999976 588899999988777788899999999999
Q ss_pred eecCCCc---eehhHHHHHHHHHHHhhc
Q 045677 300 TVRENDR---LWMHDLLQEMGQQIVRRQ 324 (352)
Q Consensus 300 ~~~~~~~---~~~H~lir~~~~~~~~~~ 324 (352)
+...++. |+||+++|+|+++++.++
T Consensus 425 ~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 425 FCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp EEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred EEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 9887665 999999999999987654
No 3
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=6e-37 Score=292.73 Aligned_cols=301 Identities=20% Similarity=0.234 Sum_probs=228.0
Q ss_pred CCCCCcCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHh---cCCCcceeEeeeccccccCCCcHH
Q 045677 4 ELEIPKELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLM---SHEFDGSSFLADVRERCDKEGSVI 80 (352)
Q Consensus 4 ~~~~~~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 80 (352)
.|..+..||||+.++++|.+++....++.++|+|+|++|+||||||.+++++. ..+|...++|.++.... . .
T Consensus 119 ~P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~----~-~ 193 (591)
T 1z6t_A 119 VPQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQD----K-S 193 (591)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCC----H-H
T ss_pred CCCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCc----h-H
Confidence 46677889999999999999998655567999999999999999999998764 56676555555443321 1 2
Q ss_pred HHHHHH---HHHHhccc---CCCccchhhhHHHHHhhhCC--ceEEEEEeCCCChhhhhhhhCCCCCCCCCceEEEEeCc
Q 045677 81 SLQKQL---LSDLLMLA---DNSIRNVYDGVNMIGSRLRH--KKVLLLIDDVADVEQLRGLFGKRDWFGLGSMIIITTRD 152 (352)
Q Consensus 81 ~l~~~~---~~~~~~~~---~~~~~~~~~~~~~~~~~l~~--~~~llvlDd~~~~~~~~~l~~~~~~~~~~~~iiitsr~ 152 (352)
.+...+ ...+.... .....+.......+...+.+ +++||||||+|+...++.+ ..+++||+|||+
T Consensus 194 ~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~ 266 (591)
T 1z6t_A 194 GLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRD 266 (591)
T ss_dssp HHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESC
T ss_pred HHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCC
Confidence 233333 23322111 12234556666777777765 7899999999997776653 458899999999
Q ss_pred hhHhhhcCcccEEec---CCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchhHHHHHHhhcCCChhHHHHH
Q 045677 153 EHLLKLHRVEEVYKL---EALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLAVDVLVSFLFGRPVDQWRST 229 (352)
Q Consensus 153 ~~~~~~~~~~~~~~l---~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~~l~~~~~~~~~~~ 229 (352)
..+..... ...+.+ .+|+.+|+.++|....+.. .....+.+..|+++|+|+|++|+++|..++..+ ..|...
T Consensus 267 ~~~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~---~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~ 341 (591)
T 1z6t_A 267 KSVTDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMK---KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYY 341 (591)
T ss_dssp GGGGTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSC---GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHH
T ss_pred cHHHHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCC---cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHH
Confidence 87665433 233443 5899999999999887431 122235688999999999999999999998764 468887
Q ss_pred HHHHccCC-----------chhHHHHHHhhhccCcHhhhhhhhhhccCCCC--CCHHHHHHHHHhcCCCchhchHHHhhc
Q 045677 230 QERLKRDP-----------ENKILGILQISFDGLKEAEKNIFLDVACFYKW--ENRDYVSKILDSCGFDPIIGISVLIEK 296 (352)
Q Consensus 230 ~~~~~~~~-----------~~~~~~~l~~~~~~L~~~~~~~l~~ls~~~~~--~~~~~l~~~~~~~~~~~~~~l~~L~~~ 296 (352)
.+.+.... ..++..++..+|+.|++..+.||.++|+||.+ ++.+.+..+|+.+.......+..|+++
T Consensus 342 l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~ 421 (591)
T 1z6t_A 342 LKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNK 421 (591)
T ss_dssp HHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHhC
Confidence 77775432 25788999999999999999999999999875 677889999976655678889999999
Q ss_pred cceeecCCC---ceehhHHHHHHHHHHH
Q 045677 297 SLLTVREND---RLWMHDLLQEMGQQIV 321 (352)
Q Consensus 297 ~li~~~~~~---~~~~H~lir~~~~~~~ 321 (352)
|||+...++ +|+||+++|+|+++++
T Consensus 422 ~Ll~~~~~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 422 SLLFCDRNGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp TSSEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred cCeEEecCCCccEEEEcHHHHHHHHhhh
Confidence 999866533 5999999999999883
No 4
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=6.8e-35 Score=280.93 Aligned_cols=279 Identities=18% Similarity=0.174 Sum_probs=208.4
Q ss_pred cCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHH--hcCCCcceeEeeeccccccCCCcHHHHHHHH
Q 045677 9 KELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDL--MSHEFDGSSFLADVRERCDKEGSVISLQKQL 86 (352)
Q Consensus 9 ~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 86 (352)
...|||+.++++|.++|... ++.++|.|+|++|+||||||.+++++ ++.+|+..++|.+++... . ...++..+
T Consensus 128 k~~VGRe~eLeeL~elL~~~-d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~---d-~~~IL~~L 202 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLEL-RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN---S-PETVLEML 202 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHC-CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSS---S-HHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHhcc-CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCC---C-HHHHHHHH
Confidence 34599999999999999853 34689999999999999999999974 677888766665554432 2 24555555
Q ss_pred HHHHhccc---CCC-------ccchhhhHHHHHhhh---CCceEEEEEeCCCChhhhhhhhCCCCCCCCCceEEEEeCch
Q 045677 87 LSDLLMLA---DNS-------IRNVYDGVNMIGSRL---RHKKVLLLIDDVADVEQLRGLFGKRDWFGLGSMIIITTRDE 153 (352)
Q Consensus 87 ~~~~~~~~---~~~-------~~~~~~~~~~~~~~l---~~~~~llvlDd~~~~~~~~~l~~~~~~~~~~~~iiitsr~~ 153 (352)
...+.... ... ..+.......++..+ .++++||||||+|+.+.|+.+. .+++||||||+.
T Consensus 203 l~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~ 275 (1221)
T 1vt4_I 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFK 275 (1221)
T ss_dssp HHHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCS
T ss_pred HHHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccCh
Confidence 54332211 100 122344455566654 6799999999999988888763 588999999998
Q ss_pred hHhhhcCcccEEecC------CCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchhHHHHHHhhcCC--ChhH
Q 045677 154 HLLKLHRVEEVYKLE------ALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLAVDVLVSFLFGR--PVDQ 225 (352)
Q Consensus 154 ~~~~~~~~~~~~~l~------~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~~l~~~--~~~~ 225 (352)
.+.........+.++ +|+.+|+++||.+.. +.. .. +... +.|+|+||||+.+|..++.. ....
T Consensus 276 ~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~-~e----eL~~---eICgGLPLALkLaGs~Lr~k~~s~ee 346 (1221)
T 1vt4_I 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR-PQ----DLPR---EVLTTNPRRLSIIAESIRDGLATWDN 346 (1221)
T ss_dssp HHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC-TT----THHH---HHCCCCHHHHHHHHHHHHHSCSSHHH
T ss_pred HHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCC-HH----HHHH---HHhCCCHHHHHHHHHHHhCCCCCHHH
Confidence 876543333345555 899999999998884 322 11 2222 34999999999999999876 4566
Q ss_pred HHHHHHHHccCCchhHHHHHHhhhccCcHhh-hhhhhhhccCCCC--CCHHHHHHHHHhcCC-CchhchHHHhhccceee
Q 045677 226 WRSTQERLKRDPENKILGILQISFDGLKEAE-KNIFLDVACFYKW--ENRDYVSKILDSCGF-DPIIGISVLIEKSLLTV 301 (352)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~~-~~~l~~ls~~~~~--~~~~~l~~~~~~~~~-~~~~~l~~L~~~~li~~ 301 (352)
|... ....+..++..+|+.|++.+ +.||.++|+||++ ++.+.+..+|..++. +....+++|+++|||+.
T Consensus 347 W~~~-------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe~~L~eLvdRSLLq~ 419 (1221)
T 1vt4_I 347 WKHV-------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419 (1221)
T ss_dssp HHHC-------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHHTSSSSSB
T ss_pred HhcC-------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHhhCCEEE
Confidence 7542 25789999999999999999 9999999999986 467788999977642 46778999999999998
Q ss_pred cC-CCceehhHHHHH
Q 045677 302 RE-NDRLWMHDLLQE 315 (352)
Q Consensus 302 ~~-~~~~~~H~lir~ 315 (352)
.+ .++|+||+++++
T Consensus 420 d~~~~rYrMHDLllE 434 (1221)
T 1vt4_I 420 QPKESTISIPSIYLE 434 (1221)
T ss_dssp CSSSSEEBCCCHHHH
T ss_pred eCCCCEEEehHHHHH
Confidence 64 567999999987
No 5
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.91 E-value=3.5e-23 Score=184.76 Aligned_cols=295 Identities=13% Similarity=0.061 Sum_probs=181.6
Q ss_pred CCCCCCCcCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccc--cCCCcH
Q 045677 2 NSELEIPKELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERC--DKEGSV 79 (352)
Q Consensus 2 ~~~~~~~~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 79 (352)
|.|+..+..|+||+.+++.|.+++..+ +.++|+|++|+|||+|+.++++... .+|+ ++.... ......
T Consensus 5 ~~~~~~~~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~~~-----~~~~-~~~~~~~~~~~~~~ 74 (350)
T 2qen_A 5 LRPKTRREDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNERP-----GILI-DCRELYAERGHITR 74 (350)
T ss_dssp CSCCCSGGGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHSS-----EEEE-EHHHHHHTTTCBCH
T ss_pred CCCCCChHhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHHcC-----cEEE-EeecccccccCCCH
Confidence 567778889999999999999998842 6899999999999999999997752 3343 333221 011122
Q ss_pred HHHHHHHHHHHhc---------------ccCC--CccchhhhHHHHHhhhCC-ceEEEEEeCCCChh--------hhhhh
Q 045677 80 ISLQKQLLSDLLM---------------LADN--SIRNVYDGVNMIGSRLRH-KKVLLLIDDVADVE--------QLRGL 133 (352)
Q Consensus 80 ~~l~~~~~~~~~~---------------~~~~--~~~~~~~~~~~~~~~l~~-~~~llvlDd~~~~~--------~~~~l 133 (352)
..+...+...+.. .... .......+...+...... ++++|||||++... .+..+
T Consensus 75 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~ 154 (350)
T 2qen_A 75 EELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLAL 154 (350)
T ss_dssp HHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHH
Confidence 3444444433211 0000 112344455555544432 39999999996532 22222
Q ss_pred hCCCCCCCCCceEEEEeCchhHhhh-----------c-CcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHH
Q 045677 134 FGKRDWFGLGSMIIITTRDEHLLKL-----------H-RVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFV 201 (352)
Q Consensus 134 ~~~~~~~~~~~~iiitsr~~~~~~~-----------~-~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~ 201 (352)
+..+.....+.++|+|++....... . +....+.+.+|+.+|+.+++.......... ..++.+..++
T Consensus 155 L~~~~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~--~~~~~~~~i~ 232 (350)
T 2qen_A 155 FAYAYDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLD--VPENEIEEAV 232 (350)
T ss_dssp HHHHHHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCC--CCHHHHHHHH
T ss_pred HHHHHHhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHH
Confidence 2221111247789999886543111 1 123479999999999999998754221111 1235688999
Q ss_pred HHcCCCchhHHHHHHhhcC-CChhHHHHHHHHHccCCchhHHHHHHhhhccC---cHhhhhhhhhhccCCCCCCHHHHHH
Q 045677 202 KYASGLPLAVDVLVSFLFG-RPVDQWRSTQERLKRDPENKILGILQISFDGL---KEAEKNIFLDVACFYKWENRDYVSK 277 (352)
Q Consensus 202 ~~~~G~Pl~i~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L---~~~~~~~l~~ls~~~~~~~~~~l~~ 277 (352)
..|+|+|++++.++..+.. .....+ ...+. ..+...+...+..+ ++..+.++..+++ +..+...+..
T Consensus 233 ~~tgG~P~~l~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~~~l~~l~~~~~~~~~~l~~la~--g~~~~~~l~~ 303 (350)
T 2qen_A 233 ELLDGIPGWLVVFGVEYLRNGDFGRA---MKRTL----EVAKGLIMGELEELRRRSPRYVDILRAIAL--GYNRWSLIRD 303 (350)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCHHHH---HHHHH----HHHHHHHHHHHHHHHHHCHHHHHHHHHHHT--TCCSHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHhccccHhHH---HHHHH----HHHHHHHHHHHHHHHhCChhHHHHHHHHHh--CCCCHHHHHH
Confidence 9999999999998876432 121111 11111 12222233333444 6888999998888 3467777766
Q ss_pred HHHh-----cCCCchhchHHHhhccceeecCCCcee-hhHHHHHHHH
Q 045677 278 ILDS-----CGFDPIIGISVLIEKSLLTVRENDRLW-MHDLLQEMGQ 318 (352)
Q Consensus 278 ~~~~-----~~~~~~~~l~~L~~~~li~~~~~~~~~-~H~lir~~~~ 318 (352)
.+.. +......+++.|.+.|||... ++.|. .||++|++.+
T Consensus 304 ~~~~~~~~~~~~~~~~~l~~L~~~gli~~~-~~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 304 YLAVKGTKIPEPRLYALLENLKKMNWIVEE-DNTYKIADPVVATVLR 349 (350)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHTTSEEEE-TTEEEESSHHHHHHHT
T ss_pred HHHHHhCCCCHHHHHHHHHHHHhCCCEEec-CCEEEEecHHHHHHHc
Confidence 6522 112345679999999999987 45565 5999999864
No 6
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.89 E-value=2.6e-22 Score=179.50 Aligned_cols=293 Identities=13% Similarity=0.085 Sum_probs=173.6
Q ss_pred CCCCCCCcCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccc-cCCCcHH
Q 045677 2 NSELEIPKELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERC-DKEGSVI 80 (352)
Q Consensus 2 ~~~~~~~~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 80 (352)
|.|+..+..|+||+.+++.|.+ +.. ++++|+|++|+|||+|+.++++..... .+|+ ++.... .......
T Consensus 6 ~~~~~~~~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~ 75 (357)
T 2fna_A 6 TSPKDNRKDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINELNLP---YIYL-DLRKFEERNYISYK 75 (357)
T ss_dssp SSCCCSGGGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHHHTCC---EEEE-EGGGGTTCSCCCHH
T ss_pred CCCCCCHHHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHhcCCC---EEEE-EchhhccccCCCHH
Confidence 5677788899999999999999 763 589999999999999999999887532 3444 333220 0001112
Q ss_pred HHHHHHHHHHhc-------------c----c-CC----------CccchhhhHHHHHhhhCCceEEEEEeCCCChh----
Q 045677 81 SLQKQLLSDLLM-------------L----A-DN----------SIRNVYDGVNMIGSRLRHKKVLLLIDDVADVE---- 128 (352)
Q Consensus 81 ~l~~~~~~~~~~-------------~----~-~~----------~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~~---- 128 (352)
.+...+...+.. . . .. .......+...+.+... ++++|||||++..+
T Consensus 76 ~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~ 154 (357)
T 2fna_A 76 DFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRG 154 (357)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTT
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCc
Confidence 333333222210 0 0 00 01223334444433322 49999999995432
Q ss_pred -hhhhhhCCCCCCCCCceEEEEeCchhHhhh----------c--CcccEEecCCCCHhHHHHHHHhhhcC-CCCCchhHH
Q 045677 129 -QLRGLFGKRDWFGLGSMIIITTRDEHLLKL----------H--RVEEVYKLEALNFDEAFRLFCLKAFD-TYKPLEEYL 194 (352)
Q Consensus 129 -~~~~l~~~~~~~~~~~~iiitsr~~~~~~~----------~--~~~~~~~l~~l~~~e~~~ll~~~~~~-~~~~~~~~~ 194 (352)
++..++..+.....+.++|+|++....... . +....+.+.+|+.+|+.+++...... ...+. .
T Consensus 155 ~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~-~-- 231 (357)
T 2fna_A 155 VNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFK-D-- 231 (357)
T ss_dssp CCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCC-C--
T ss_pred hhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCC-c--
Confidence 222222221111246789999987643211 1 12357999999999999999875421 11121 1
Q ss_pred HHHHHHHHHcCCCchhHHHHHHhhcC-CChhHHHHHHHHHccCCchhHHHHHHhhh---ccCcHhhhhhhhhhccCCCCC
Q 045677 195 ELAKCFVKYASGLPLAVDVLVSFLFG-RPVDQWRSTQERLKRDPENKILGILQISF---DGLKEAEKNIFLDVACFYKWE 270 (352)
Q Consensus 195 ~~~~~i~~~~~G~Pl~i~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~L~~~~~~~l~~ls~~~~~~ 270 (352)
...+++.|+|+|++++.++..+.. .+...+. ..+.......+..-+...+ ..+++..+.++..+++ +.
T Consensus 232 --~~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~--g~- 303 (357)
T 2fna_A 232 --YEVVYEKIGGIPGWLTYFGFIYLDNKNLDFAI---NQTLEYAKKLILKEFENFLHGREIARKRYLNIMRTLSK--CG- 303 (357)
T ss_dssp --HHHHHHHHCSCHHHHHHHHHHHHHHCCHHHHH---HHHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT--CB-
T ss_pred --HHHHHHHhCCCHHHHHHHHHHHccccchHHHH---HHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHc--CC-
Confidence 178999999999999998877543 2222221 1111000011111122111 1688899999999998 34
Q ss_pred CHHHHHHHHH-hcC-----CCchhchHHHhhccceeecCCCcee-hhHHHHHHH
Q 045677 271 NRDYVSKILD-SCG-----FDPIIGISVLIEKSLLTVRENDRLW-MHDLLQEMG 317 (352)
Q Consensus 271 ~~~~l~~~~~-~~~-----~~~~~~l~~L~~~~li~~~~~~~~~-~H~lir~~~ 317 (352)
+.+.+...+. ..+ ......++.|.+.|||...+ +.|+ .||++|+++
T Consensus 304 ~~~~l~~~~~~~~g~~~~~~~~~~~L~~L~~~gli~~~~-~~y~f~~~~~~~~l 356 (357)
T 2fna_A 304 KWSDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIKEG-EKYCPSEPLISLAF 356 (357)
T ss_dssp CHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEESS-SCEEESSHHHHHHT
T ss_pred CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEecC-CEEEecCHHHHHhh
Confidence 7777765431 112 23467799999999999874 5566 689999875
No 7
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.83 E-value=1.9e-19 Score=164.12 Aligned_cols=289 Identities=16% Similarity=0.111 Sum_probs=170.4
Q ss_pred CCCCCcCcccccHHHHHHHHHH-hc--CC--CCeEEEEE--EcCCCCcHHHHHHHHHHHhcCC-----CcceeEeeeccc
Q 045677 4 ELEIPKELVGMESRLEKLKFLM-CT--GS--NDVRTIGI--WGMGGLGKTTLARVVYDLMSHE-----FDGSSFLADVRE 71 (352)
Q Consensus 4 ~~~~~~~~vGR~~~l~~l~~~l-~~--~~--~~~~~v~I--~G~~GiGKT~La~~~~~~~~~~-----~~~~~~~~~~~~ 71 (352)
|...|..|+||+.+++.|.+++ .. .+ ...+.++| +|++|+|||+|++.+++.+... +...+.+.++..
T Consensus 17 ~~~~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (412)
T 1w5s_A 17 ENYIPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFN 96 (412)
T ss_dssp TTCCCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGG
T ss_pred CccCCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCC
Confidence 4455688999999999999988 42 12 24577888 9999999999999999886542 122233332211
Q ss_pred cccCCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHHhhhC--CceEEEEEeCCCCh--------hhhhhhhCCCCCC-
Q 045677 72 RCDKEGSVISLQKQLLSDLLMLADNSIRNVYDGVNMIGSRLR--HKKVLLLIDDVADV--------EQLRGLFGKRDWF- 140 (352)
Q Consensus 72 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~llvlDd~~~~--------~~~~~l~~~~~~~- 140 (352)
......++..++..+.........+.......+...+. +++++|||||++.. +.+..+...+...
T Consensus 97 ----~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~ 172 (412)
T 1w5s_A 97 ----APNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIP 172 (412)
T ss_dssp ----CCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSC
T ss_pred ----CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcc
Confidence 12235677777776643322122233444555555543 67999999999543 3343333332211
Q ss_pred --C--CCceEEEEeCchhHhhh---------cCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcC--
Q 045677 141 --G--LGSMIIITTRDEHLLKL---------HRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYAS-- 205 (352)
Q Consensus 141 --~--~~~~iiitsr~~~~~~~---------~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~-- 205 (352)
. .+..+|+||+...+... .+....+.+++++.+++.+++..............++.+..+++.++
T Consensus 173 ~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 252 (412)
T 1w5s_A 173 SRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGED 252 (412)
T ss_dssp CTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGG
T ss_pred cCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHh
Confidence 2 44567778875442211 11233499999999999999976542111111122467888999999
Q ss_pred ----CCchhHHHHHHhhc------CC---ChhHHHHHHHHHccCCchhH-HHHHHhhhccCcHhhhhhhhhhccCC----
Q 045677 206 ----GLPLAVDVLVSFLF------GR---PVDQWRSTQERLKRDPENKI-LGILQISFDGLKEAEKNIFLDVACFY---- 267 (352)
Q Consensus 206 ----G~Pl~i~~~~~~l~------~~---~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~L~~~~~~~l~~ls~~~---- 267 (352)
|+|..+..++.... .. ....+...... .. ...+...+..||+..+.++..++.+.
T Consensus 253 ~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~-------~~~~~~~~~~l~~l~~~~~~~l~aia~l~~~~~ 325 (412)
T 1w5s_A 253 KGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSE-------NEAASIQTHELEALSIHELIILRLIAEATLGGM 325 (412)
T ss_dssp GTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHH-------C------CCSSSSSCHHHHHHHHHHHHHHHTTC
T ss_pred ccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH-------HhccchHHHHHHcCCHHHHHHHHHHHHHHhcCC
Confidence 99987766554321 11 11112211111 11 34456678899999999999888643
Q ss_pred CCCCHHHHHH----HH-HhcCCC------chhchHHHhhccceeecC
Q 045677 268 KWENRDYVSK----IL-DSCGFD------PIIGISVLIEKSLLTVRE 303 (352)
Q Consensus 268 ~~~~~~~l~~----~~-~~~~~~------~~~~l~~L~~~~li~~~~ 303 (352)
..++...+.. +. ...+.. ...+++.|.+.|||....
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~ 372 (412)
T 1w5s_A 326 EWINAGLLRQRYEDASLTMYNVKPRGYTQYHIYLKHLTSLGLVDAKP 372 (412)
T ss_dssp SSBCHHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CCccHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCEEeec
Confidence 3455544322 22 222211 246789999999998753
No 8
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.75 E-value=2.6e-16 Score=142.25 Aligned_cols=288 Identities=15% Similarity=0.141 Sum_probs=171.8
Q ss_pred CCCCcCcccccHHHHHHHHHHhc----CCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCC-cceeEeeeccccccCCCcH
Q 045677 5 LEIPKELVGMESRLEKLKFLMCT----GSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEF-DGSSFLADVRERCDKEGSV 79 (352)
Q Consensus 5 ~~~~~~~vGR~~~l~~l~~~l~~----~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 79 (352)
...|+.++||+.+++.+..++.. ..+..+.++|+|++|+|||+|++.++..+.... ...+++ ++.. ....
T Consensus 13 ~~~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i-~~~~----~~~~ 87 (389)
T 1fnn_A 13 SYVPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYI-NGFI----YRNF 87 (389)
T ss_dssp TCCCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEE-ETTT----CCSH
T ss_pred ccCCCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEE-eCcc----CCCH
Confidence 34558899999999999998875 122234899999999999999999998876542 223333 2211 1222
Q ss_pred HHHHHHHHHHHhcccCCCccchhhhHHHHHhhh--CCceEEEEEeCCCC--hhhhhhhhCCCCCCC----CCceEEEEeC
Q 045677 80 ISLQKQLLSDLLMLADNSIRNVYDGVNMIGSRL--RHKKVLLLIDDVAD--VEQLRGLFGKRDWFG----LGSMIIITTR 151 (352)
Q Consensus 80 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~llvlDd~~~--~~~~~~l~~~~~~~~----~~~~iiitsr 151 (352)
..+...++..+.................+...+ .+++.+|+||+++. ...+..+...+.... .+..+|++++
T Consensus 88 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~ 167 (389)
T 1fnn_A 88 TAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGH 167 (389)
T ss_dssp HHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEES
T ss_pred HHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEEC
Confidence 566666666554322222223344444444444 35689999999964 344555544443211 3667787777
Q ss_pred chhHhhhcC------cc-cEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHc---------CCCchhHHHHH
Q 045677 152 DEHLLKLHR------VE-EVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYA---------SGLPLAVDVLV 215 (352)
Q Consensus 152 ~~~~~~~~~------~~-~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~---------~G~Pl~i~~~~ 215 (352)
......... .. ..+.+++++.++..+++..............++.++.+++.+ +|+|..+..++
T Consensus 168 ~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l 247 (389)
T 1fnn_A 168 NDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDIL 247 (389)
T ss_dssp STHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHH
T ss_pred CchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHH
Confidence 553322211 11 369999999999999998775321111123347788899999 79988776655
Q ss_pred HhhcC------C---ChhHHHHHHHHHccCCchhHHHHHHhhhccCcHhhhhhhhhhccCC---C--CCCHHHHHHHHHh
Q 045677 216 SFLFG------R---PVDQWRSTQERLKRDPENKILGILQISFDGLKEAEKNIFLDVACFY---K--WENRDYVSKILDS 281 (352)
Q Consensus 216 ~~l~~------~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~l~~ls~~~---~--~~~~~~l~~~~~~ 281 (352)
..... . ..+........... ..+...+..|+...+.++..++.+. . .++...+......
T Consensus 248 ~~a~~~a~~~~~~~i~~~~v~~~~~~~~~-------~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~ 320 (389)
T 1fnn_A 248 YRSAYAAQQNGRKHIAPEDVRKSSKEVLF-------GISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKI 320 (389)
T ss_dssp HHHHHHHHHTTCSSCCHHHHHHHHHHHSC-------CCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHHHhh-------hhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHH
Confidence 44321 1 11222222222221 1233446778888888888777643 2 3555555433221
Q ss_pred ----cC------CCchhchHHHhhccceeecCC
Q 045677 282 ----CG------FDPIIGISVLIEKSLLTVREN 304 (352)
Q Consensus 282 ----~~------~~~~~~l~~L~~~~li~~~~~ 304 (352)
.+ ......+..|...|+|.....
T Consensus 321 ~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~ 353 (389)
T 1fnn_A 321 VCEEYGERPRVHSQLWSYLNDLREKGIVETRQN 353 (389)
T ss_dssp HHHHTTCCCCCHHHHHHHHHHHHHTTSSEEEEC
T ss_pred HHHHcCCCCCCHHHHHHHHHHHHhCCCeEEeee
Confidence 11 112456899999999987543
No 9
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.73 E-value=4.6e-17 Score=146.97 Aligned_cols=288 Identities=17% Similarity=0.106 Sum_probs=164.9
Q ss_pred CCCCCcCcccccHHHHHHHHHHhcC--CCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCC--cceeEeeeccccccCCCcH
Q 045677 4 ELEIPKELVGMESRLEKLKFLMCTG--SNDVRTIGIWGMGGLGKTTLARVVYDLMSHEF--DGSSFLADVRERCDKEGSV 79 (352)
Q Consensus 4 ~~~~~~~~vGR~~~l~~l~~~l~~~--~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 79 (352)
+...|..|+||+.+++.|.+++... ....+.++|+|++|+|||+|++.++..+...+ ...+.+.++.... ..
T Consensus 15 ~~~~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~----~~ 90 (386)
T 2qby_A 15 PDYIPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQID----TP 90 (386)
T ss_dssp SSCCCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHC----SH
T ss_pred CccCCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCC----CH
Confidence 3455688999999999999988852 34457899999999999999999998875542 2222233222221 12
Q ss_pred HHHHHHHHHHHhcccCCCccchhhhHHHHHhhhC--CceEEEEEeCCCCh------hhhhhhhCCCCC-CCCCceEEEEe
Q 045677 80 ISLQKQLLSDLLMLADNSIRNVYDGVNMIGSRLR--HKKVLLLIDDVADV------EQLRGLFGKRDW-FGLGSMIIITT 150 (352)
Q Consensus 80 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~llvlDd~~~~------~~~~~l~~~~~~-~~~~~~iiits 150 (352)
..+...++..+.................+...+. +.+.+||||+++.. ..+..+...+.. ...+..+|++|
T Consensus 91 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~ 170 (386)
T 2qby_A 91 YRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGIT 170 (386)
T ss_dssp HHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEE
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEE
Confidence 4445555444322211112223444444444443 45899999999532 233333322211 13456677777
Q ss_pred CchhHhhhc------Ccc-cEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcC---CCchhHHHHHHhhc-
Q 045677 151 RDEHLLKLH------RVE-EVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYAS---GLPLAVDVLVSFLF- 219 (352)
Q Consensus 151 r~~~~~~~~------~~~-~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~---G~Pl~i~~~~~~l~- 219 (352)
+........ +.. ..+.+++++.++..+++...............+..+.+++.++ |+|..+..++....
T Consensus 171 ~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~ 250 (386)
T 2qby_A 171 NDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGE 250 (386)
T ss_dssp SCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 755322211 111 4799999999999999987542111011122456677777777 99996554443321
Q ss_pred -----CC---ChhHHHHHHHHHccCCchhHHHHHHhhhccCcHhhhhhhhhhccCC----CCCCHHHH-------HHHHH
Q 045677 220 -----GR---PVDQWRSTQERLKRDPENKILGILQISFDGLKEAEKNIFLDVACFY----KWENRDYV-------SKILD 280 (352)
Q Consensus 220 -----~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~l~~ls~~~----~~~~~~~l-------~~~~~ 280 (352)
.. ....+....... ....+...+..+++..+.++..++.+. .+++...+ ...++
T Consensus 251 ~a~~~~~~~i~~~~v~~a~~~~-------~~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g 323 (386)
T 2qby_A 251 IAERMKDTKVKEEYVYMAKEEI-------ERDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLG 323 (386)
T ss_dssp HHHHTTCSSCCHHHHHHHHHHH-------HHHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHT
T ss_pred HHHhcCCCccCHHHHHHHHHHH-------hhchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcC
Confidence 11 122233222222 224566778889998888888777432 22334322 22222
Q ss_pred hcC---CCchhchHHHhhccceeec
Q 045677 281 SCG---FDPIIGISVLIEKSLLTVR 302 (352)
Q Consensus 281 ~~~---~~~~~~l~~L~~~~li~~~ 302 (352)
... ......++.|...|+|+..
T Consensus 324 ~~~~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 324 VEAVTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCCCCHHHHHHHHHHHHhCCCEEEE
Confidence 222 1235678999999999864
No 10
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.73 E-value=8.7e-16 Score=138.60 Aligned_cols=282 Identities=13% Similarity=0.048 Sum_probs=168.7
Q ss_pred CCcCcccccHHHHHHHHHHhc--CCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCC------C-cceeEeeeccccccCCC
Q 045677 7 IPKELVGMESRLEKLKFLMCT--GSNDVRTIGIWGMGGLGKTTLARVVYDLMSHE------F-DGSSFLADVRERCDKEG 77 (352)
Q Consensus 7 ~~~~~vGR~~~l~~l~~~l~~--~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~------~-~~~~~~~~~~~~~~~~~ 77 (352)
.|+.|+||+.+++.+.+++.. .....+.++|+|++|+|||+|++.+++.+... + ...+.+.++.... .
T Consensus 18 ~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~ 94 (384)
T 2qby_B 18 VFKEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVG---G 94 (384)
T ss_dssp HCSSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHC---S
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCC---C
Confidence 357899999999999988775 23445789999999999999999999886332 2 2233333332221 0
Q ss_pred cHHHHHHHHHHHHhcccCC-CccchhhhHHHHHhhhCCceEEEEEeCCCChh------h-hhhhhCCCCCCCCCceEEEE
Q 045677 78 SVISLQKQLLSDLLMLADN-SIRNVYDGVNMIGSRLRHKKVLLLIDDVADVE------Q-LRGLFGKRDWFGLGSMIIIT 149 (352)
Q Consensus 78 ~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~~------~-~~~l~~~~~~~~~~~~iiit 149 (352)
....++..++..+.+.... ...........+...+...+.+|||||++... . +..+.... .+..+|+|
T Consensus 95 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~----~~~~iI~~ 170 (384)
T 2qby_B 95 TPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD----ANISVIMI 170 (384)
T ss_dssp CHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS----SCEEEEEE
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC----cceEEEEE
Confidence 2256666666665432221 12233455666666776665699999996432 2 33444332 57788888
Q ss_pred eCchhH----hhh--cCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcC---CCchhHHHHHHhh--
Q 045677 150 TRDEHL----LKL--HRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYAS---GLPLAVDVLVSFL-- 218 (352)
Q Consensus 150 sr~~~~----~~~--~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~---G~Pl~i~~~~~~l-- 218 (352)
|+.... ... .+....+.+++++.++..+++...+..........++.++.+++.++ |+|..+..+....
T Consensus 171 t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~ 250 (384)
T 2qby_B 171 SNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQ 250 (384)
T ss_dssp CSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred ECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 876421 111 12234899999999999999988753111011112356777888887 9998554333222
Q ss_pred -c-C---CChhHHHHHHHHHccCCchhHHHHHHhhhccCcHhhhhhhhhhccCCC-CCCHHHHHHHHHhcC---C---Cc
Q 045677 219 -F-G---RPVDQWRSTQERLKRDPENKILGILQISFDGLKEAEKNIFLDVACFYK-WENRDYVSKILDSCG---F---DP 286 (352)
Q Consensus 219 -~-~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~l~~ls~~~~-~~~~~~l~~~~~~~~---~---~~ 286 (352)
. . -..+.+....+.. ....+...+..|++.++.++..++.... +-.......+....+ . ..
T Consensus 251 ~a~~~~~i~~~~v~~~~~~~-------~~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 323 (384)
T 2qby_B 251 LASGGGIIRKEHVDKAIVDY-------EQERLIEAVKALPFHYKLALRSLIESEDVMSAHKMYTDLCNKFKQKPLSYRRF 323 (384)
T ss_dssp HTTSSSCCCHHHHHHHHHHH-------HHHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHHHHHHHHHHHTTCCCCCHHHH
T ss_pred HhcCCCccCHHHHHHHHHHH-------hcchHHHHHHcCCHHHHHHHHHHHHhcccChHHHHHHHHHHHcCCCCCCHHHH
Confidence 1 1 1233444333332 1234667788899999988887776111 101122223332222 1 12
Q ss_pred hhchHHHhhccceeec
Q 045677 287 IIGISVLIEKSLLTVR 302 (352)
Q Consensus 287 ~~~l~~L~~~~li~~~ 302 (352)
...+..|.+.|+|+..
T Consensus 324 ~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 324 SDIISELDMFGIVKIR 339 (384)
T ss_dssp HHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHhCCCEEEE
Confidence 4568899999999864
No 11
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.69 E-value=1.7e-15 Score=136.75 Aligned_cols=288 Identities=12% Similarity=0.068 Sum_probs=167.3
Q ss_pred CCCCCcCcccccHHHHHHHHHHhcC--CCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCC-----cceeEeeeccccccCC
Q 045677 4 ELEIPKELVGMESRLEKLKFLMCTG--SNDVRTIGIWGMGGLGKTTLARVVYDLMSHEF-----DGSSFLADVRERCDKE 76 (352)
Q Consensus 4 ~~~~~~~~vGR~~~l~~l~~~l~~~--~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 76 (352)
+...|..|+||+.+++.+..++... ....+.++|+|++|+|||++++.+++.+.... ...+.+.++.. .
T Consensus 14 ~~~~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~----~ 89 (387)
T 2v1u_A 14 PDYVPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARH----R 89 (387)
T ss_dssp TTCCCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTT----S
T ss_pred CccCCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCc----C
Confidence 3445688999999999999998642 34557899999999999999999998864421 22222332222 1
Q ss_pred CcHHHHHHHHHHHHhcccCCCccchhhhHHHHHhhh--CCceEEEEEeCCCChh-------hhhhhhCCCCCC--CCCce
Q 045677 77 GSVISLQKQLLSDLLMLADNSIRNVYDGVNMIGSRL--RHKKVLLLIDDVADVE-------QLRGLFGKRDWF--GLGSM 145 (352)
Q Consensus 77 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~llvlDd~~~~~-------~~~~l~~~~~~~--~~~~~ 145 (352)
.....+...++..+.................+...+ .+++.+|+||+++... .+..++...... ..+..
T Consensus 90 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~ 169 (387)
T 2v1u_A 90 ETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVS 169 (387)
T ss_dssp CSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CE
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEE
Confidence 222566667776664332222333445555555555 3568999999996433 223333222111 34567
Q ss_pred EEEEeCchhHhhh-----c-Ccc-cEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcC---CCchhHHHHH
Q 045677 146 IIITTRDEHLLKL-----H-RVE-EVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYAS---GLPLAVDVLV 215 (352)
Q Consensus 146 iiitsr~~~~~~~-----~-~~~-~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~---G~Pl~i~~~~ 215 (352)
+|++|+....... . +.. ..+.+++++.++..+++..............++..+.+++.++ |+|..+..+.
T Consensus 170 ~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l 249 (387)
T 2v1u_A 170 LVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLL 249 (387)
T ss_dssp EEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred EEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 7777765422111 1 222 4789999999999999987642100011122355777888888 9996554433
Q ss_pred Hhhc------CC---ChhHHHHHHHHHccCCchhHHHHHHhhhccCcHhhhhhhhhhcc-CC--CCCCHHHHH----HHH
Q 045677 216 SFLF------GR---PVDQWRSTQERLKRDPENKILGILQISFDGLKEAEKNIFLDVAC-FY--KWENRDYVS----KIL 279 (352)
Q Consensus 216 ~~l~------~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~l~~ls~-~~--~~~~~~~l~----~~~ 279 (352)
.... .. ..+.+....... ....+...+..+++.++.++..+.. +. ..++...+. .+.
T Consensus 250 ~~a~~~a~~~~~~~i~~~~v~~a~~~~-------~~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~ 322 (387)
T 2v1u_A 250 RVAGEIAERRREERVRREHVYSARAEI-------ERDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELT 322 (387)
T ss_dssp HHHHHHHHHTTCSCBCHHHHHHHHHHH-------HHHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcCHHHHHHHHHHH-------hhchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Confidence 3321 11 223333333332 1234666788999998888877763 32 123333222 222
Q ss_pred HhcCC------CchhchHHHhhccceeec
Q 045677 280 DSCGF------DPIIGISVLIEKSLLTVR 302 (352)
Q Consensus 280 ~~~~~------~~~~~l~~L~~~~li~~~ 302 (352)
...+. .....++.|...|+++..
T Consensus 323 ~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 323 STLGLEHVTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp HHTTCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HhcCCCCCCHHHHHHHHHHHHhCCCeEEE
Confidence 22221 124568899999999874
No 12
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.59 E-value=3.5e-14 Score=119.58 Aligned_cols=201 Identities=15% Similarity=0.090 Sum_probs=120.1
Q ss_pred CCCCcCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHH
Q 045677 5 LEIPKELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQK 84 (352)
Q Consensus 5 ~~~~~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (352)
|.....|+||+.+++.|..++.... ..+.++|+|++|+|||+|++.+++.+..........+ ... .. ..
T Consensus 19 p~~~~~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~--------~~~-~~-~~ 87 (250)
T 1njg_A 19 PQTFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPC--------GVC-DN-CR 87 (250)
T ss_dssp CCSGGGCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCC--------SCS-HH-HH
T ss_pred CccHHHHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC--------ccc-HH-HH
Confidence 3444679999999999999998542 2357899999999999999999988654321110000 000 00 00
Q ss_pred HHHHHH----hcccCCCccchhhhHHHHHhh----hCCceEEEEEeCCCC--hhhhhhhhCCCCCCCCCceEEEEeCchh
Q 045677 85 QLLSDL----LMLADNSIRNVYDGVNMIGSR----LRHKKVLLLIDDVAD--VEQLRGLFGKRDWFGLGSMIIITTRDEH 154 (352)
Q Consensus 85 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~----l~~~~~llvlDd~~~--~~~~~~l~~~~~~~~~~~~iiitsr~~~ 154 (352)
.+.... .................+... ..+++.+|||||++. ...+..++..+.....+..+|+||+...
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 88 EIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 167 (250)
T ss_dssp HHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGG
T ss_pred HHhccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChH
Confidence 110000 000000001111111222211 134679999999953 4455555554443355778888876543
Q ss_pred H-hh-hcCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchhHHHHHHhh
Q 045677 155 L-LK-LHRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLAVDVLVSFL 218 (352)
Q Consensus 155 ~-~~-~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~~l 218 (352)
. .. .......+.+++++.++..+++.......... ..++..+.+++.++|+|..+..++..+
T Consensus 168 ~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 168 KLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA--HEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp GSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCC--BCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 1 11 12335689999999999999998766322211 224668899999999999998776654
No 13
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.55 E-value=2.1e-13 Score=113.18 Aligned_cols=189 Identities=11% Similarity=0.074 Sum_probs=115.0
Q ss_pred CCCCcCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCC-CcceeEeeeccccccCCCcHHHHH
Q 045677 5 LEIPKELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHE-FDGSSFLADVRERCDKEGSVISLQ 83 (352)
Q Consensus 5 ~~~~~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~ 83 (352)
|..-..++||+..++.+.+++... ..+.++|+|++|+|||+++..+++.+... +.......+.. .... ....
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~----~~~~-~~~~ 85 (226)
T 2chg_A 13 PRTLDEVVGQDEVIQRLKGYVERK--NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNAS----DERG-IDVV 85 (226)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTT--CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETT----CTTC-HHHH
T ss_pred CCCHHHHcCcHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccc----cccC-hHHH
Confidence 444567999999999999999854 33348999999999999999999886433 22222222111 1111 1111
Q ss_pred HHHHHHHhcccCCCccchhhhHHHHHhhhCCceEEEEEeCCCCh--hhhhhhhCCCCCCCCCceEEEEeCchhH-h-hhc
Q 045677 84 KQLLSDLLMLADNSIRNVYDGVNMIGSRLRHKKVLLLIDDVADV--EQLRGLFGKRDWFGLGSMIIITTRDEHL-L-KLH 159 (352)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~iiitsr~~~~-~-~~~ 159 (352)
...+..+..... ....++.+|+|||++.. .....+...+.....++.+|+|++.... . ...
T Consensus 86 ~~~~~~~~~~~~---------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~ 150 (226)
T 2chg_A 86 RHKIKEFARTAP---------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQ 150 (226)
T ss_dssp HHHHHHHHTSCC---------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHH
T ss_pred HHHHHHHhcccC---------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHH
Confidence 111111111000 11256889999999643 3344444333333456778888775421 1 112
Q ss_pred CcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchhHHHHHHh
Q 045677 160 RVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLAVDVLVSF 217 (352)
Q Consensus 160 ~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~~ 217 (352)
.....+.+.+++.++...++.......... ..++..+.+++.++|+|..+......
T Consensus 151 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~g~~r~l~~~l~~ 206 (226)
T 2chg_A 151 SRCAVFRFKPVPKEAMKKRLLEICEKEGVK--ITEDGLEALIYISGGDFRKAINALQG 206 (226)
T ss_dssp TTSEEEECCCCCHHHHHHHHHHHHHHHTCC--BCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HhCceeecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 334589999999999999998765321111 22466788999999999976654443
No 14
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.48 E-value=1.7e-12 Score=114.09 Aligned_cols=184 Identities=11% Similarity=0.177 Sum_probs=111.7
Q ss_pred CCCcCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCC-CcceeEeeeccccccCCCcHHHHHH
Q 045677 6 EIPKELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHE-FDGSSFLADVRERCDKEGSVISLQK 84 (352)
Q Consensus 6 ~~~~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (352)
.....++||+..++.|.+++..+ ..+.++|+|++|+|||++|..+++.+... +...+...+... ... ...+.
T Consensus 18 ~~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~----~~~-~~~i~ 90 (323)
T 1sxj_B 18 QVLSDIVGNKETIDRLQQIAKDG--NMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASD----DRG-IDVVR 90 (323)
T ss_dssp SSGGGCCSCTHHHHHHHHHHHSC--CCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTS----CCS-HHHHH
T ss_pred CCHHHHHCCHHHHHHHHHHHHcC--CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCcc----ccC-hHHHH
Confidence 33467999999999999999853 32338999999999999999999886332 222222221111 111 11222
Q ss_pred HHHHHHhcccCCCccchhhhHHHHHhhh-CCceEEEEEeCCCC--hhhhhhhhCCCCCCCCCceEEEEeCchh-Hhh-hc
Q 045677 85 QLLSDLLMLADNSIRNVYDGVNMIGSRL-RHKKVLLLIDDVAD--VEQLRGLFGKRDWFGLGSMIIITTRDEH-LLK-LH 159 (352)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~llvlDd~~~--~~~~~~l~~~~~~~~~~~~iiitsr~~~-~~~-~~ 159 (352)
.++..+.... ..+ .+++.++||||++. ......+...+.....++.+|++|.... +.+ ..
T Consensus 91 ~~~~~~~~~~---------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~ 155 (323)
T 1sxj_B 91 NQIKHFAQKK---------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQ 155 (323)
T ss_dssp THHHHHHHBC---------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHH
T ss_pred HHHHHHHhcc---------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHH
Confidence 2222211000 001 34588999999964 3334444444433345677887776532 111 12
Q ss_pred CcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchhHHH
Q 045677 160 RVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLAVDV 213 (352)
Q Consensus 160 ~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~ 213 (352)
.....+.+.+++.++..+++...+...... ..++.++.+++.++|+|..+..
T Consensus 156 sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~G~~r~a~~ 207 (323)
T 1sxj_B 156 SQCAILRYSKLSDEDVLKRLLQIIKLEDVK--YTNDGLEAIIFTAEGDMRQAIN 207 (323)
T ss_dssp TTSEEEECCCCCHHHHHHHHHHHHHHHTCC--BCHHHHHHHHHHHTTCHHHHHH
T ss_pred hhceEEeecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHH
Confidence 345589999999999999998765221111 2236678899999999965443
No 15
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.38 E-value=1.4e-11 Score=108.35 Aligned_cols=191 Identities=14% Similarity=0.127 Sum_probs=114.6
Q ss_pred CCCCcCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCC-cceeEeeeccccccCCCcHHHHH
Q 045677 5 LEIPKELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEF-DGSSFLADVRERCDKEGSVISLQ 83 (352)
Q Consensus 5 ~~~~~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~ 83 (352)
|..-..++|++..++.|..++..+ ..+.++|+|++|+|||++|+.+++.+.... ...+...+...... ....
T Consensus 21 p~~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~-----~~~~ 93 (327)
T 1iqp_A 21 PQRLDDIVGQEHIVKRLKHYVKTG--SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERG-----INVI 93 (327)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHHT--CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHH-----HHTT
T ss_pred CCCHHHhhCCHHHHHHHHHHHHcC--CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCc-----hHHH
Confidence 333466999999999999999854 333489999999999999999998864321 11122211111000 0000
Q ss_pred HHHHHHHhcccCCCccchhhhHHHHHhhhCCceEEEEEeCCCCh--hhhhhhhCCCCCCCCCceEEEEeCchh-Hhhh-c
Q 045677 84 KQLLSDLLMLADNSIRNVYDGVNMIGSRLRHKKVLLLIDDVADV--EQLRGLFGKRDWFGLGSMIIITTRDEH-LLKL-H 159 (352)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~iiitsr~~~-~~~~-~ 159 (352)
...+..+.... ....+++.++|+|+++.. .....+...+.....++++|+|+.... +.+. .
T Consensus 94 ~~~~~~~~~~~---------------~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~ 158 (327)
T 1iqp_A 94 REKVKEFARTK---------------PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQ 158 (327)
T ss_dssp HHHHHHHHHSC---------------CGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHH
T ss_pred HHHHHHHHhhC---------------CcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHH
Confidence 11111100000 001256789999999643 344445444433355678888776542 1111 1
Q ss_pred CcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchhHHHHHHhhc
Q 045677 160 RVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLAVDVLVSFLF 219 (352)
Q Consensus 160 ~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~~l~ 219 (352)
.....+.+.+++.++...++...+..... ...++.++.+++.++|+|..+......+.
T Consensus 159 sr~~~~~~~~l~~~~~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~g~~r~~~~~l~~~~ 216 (327)
T 1iqp_A 159 SRCAIFRFRPLRDEDIAKRLRYIAENEGL--ELTEEGLQAILYIAEGDMRRAINILQAAA 216 (327)
T ss_dssp HTEEEEECCCCCHHHHHHHHHHHHHTTTC--EECHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhCcEEEecCCCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 23457899999999999999876533221 12346788899999999997765554443
No 16
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.37 E-value=4.3e-11 Score=104.83 Aligned_cols=188 Identities=10% Similarity=0.057 Sum_probs=115.6
Q ss_pred CCCcCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhc-CCCcceeEeeeccccccCCCcHHHHHH
Q 045677 6 EIPKELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMS-HEFDGSSFLADVRERCDKEGSVISLQK 84 (352)
Q Consensus 6 ~~~~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (352)
..-..++|++..++.|.+++..+ ..+.++|+|++|+|||++|..+++.+. ..+...+...+.......... .....
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 90 (319)
T 2chq_A 14 RTLDEVVGQDEVIQRLKGYVERK--NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVV-RHKIK 90 (319)
T ss_dssp SSGGGSCSCHHHHHHHHTTTTTT--CCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTTTS-SHHHH
T ss_pred CCHHHHhCCHHHHHHHHHHHhCC--CCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChHHH-HHHHH
Confidence 33466999999999999998853 333489999999999999999998863 222222222222111110011 11111
Q ss_pred HHHHHHhcccCCCccchhhhHHHHHhhhCCceEEEEEeCCCCh--hhhhhhhCCCCCCCCCceEEEEeCchh-Hh-hhcC
Q 045677 85 QLLSDLLMLADNSIRNVYDGVNMIGSRLRHKKVLLLIDDVADV--EQLRGLFGKRDWFGLGSMIIITTRDEH-LL-KLHR 160 (352)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~iiitsr~~~-~~-~~~~ 160 (352)
.+... . ....+++.++|||+++.. .....+...+.....++.+|+++.... +. ....
T Consensus 91 ~~~~~----~---------------~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~s 151 (319)
T 2chq_A 91 EFART----A---------------PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQS 151 (319)
T ss_dssp HHHHS----C---------------CSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHT
T ss_pred HHHhc----C---------------CCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHh
Confidence 11100 0 001246789999999643 445666666655556777787776442 11 1123
Q ss_pred cccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchhHHHHHHh
Q 045677 161 VEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLAVDVLVSF 217 (352)
Q Consensus 161 ~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~~ 217 (352)
....+.+.+++.++...++...+...... ..++.++.++..++|++..+......
T Consensus 152 r~~~i~~~~~~~~~~~~~l~~~~~~~~~~--i~~~~l~~l~~~~~G~~r~~~~~l~~ 206 (319)
T 2chq_A 152 RCAVFRFKPVPKEAMKKRLLEICEKEGVK--ITEDGLEALIYISGGDFRKAINALQG 206 (319)
T ss_dssp TCEEEECCCCCHHHHHHHHHHHHHTTCCC--BCHHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred hCeEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 44689999999999999998776432221 23467888999999999876654443
No 17
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.35 E-value=4.4e-11 Score=105.07 Aligned_cols=257 Identities=17% Similarity=0.081 Sum_probs=149.3
Q ss_pred CCCCcCcccccHHHHHHHHHHhc---CCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHH
Q 045677 5 LEIPKELVGMESRLEKLKFLMCT---GSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVIS 81 (352)
Q Consensus 5 ~~~~~~~vGR~~~l~~l~~~l~~---~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (352)
|..-..|+|++..++.+..++.. .....+.++|+|++|+|||++|+.+++.....+ .++ +.... .....
T Consensus 8 p~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~---~~~-~~~~~----~~~~~ 79 (324)
T 1hqc_A 8 PKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL---RVT-SGPAI----EKPGD 79 (324)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCE---EEE-CTTTC----CSHHH
T ss_pred cccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCE---EEE-ecccc----CChHH
Confidence 34456799999999999888763 122346789999999999999999998774322 222 11111 11011
Q ss_pred HHHHHHHHHhcccCCCccchhhhHHHHHhhhCCceEEEEEeCCCChh--hhhhhhCCCCCC------------------C
Q 045677 82 LQKQLLSDLLMLADNSIRNVYDGVNMIGSRLRHKKVLLLIDDVADVE--QLRGLFGKRDWF------------------G 141 (352)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~~--~~~~l~~~~~~~------------------~ 141 (352)
+. ..+... ...+.+|+||+++... ....++..+... .
T Consensus 80 l~----------------------~~l~~~-~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~ 136 (324)
T 1hqc_A 80 LA----------------------AILANS-LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLEL 136 (324)
T ss_dssp HH----------------------HHHTTT-CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEEC
T ss_pred HH----------------------HHHHHh-ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCC
Confidence 11 111110 1345699999996532 222222111100 0
Q ss_pred CCceEEEEeCchh-Hhhh--cCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchhHHHHHHhh
Q 045677 142 LGSMIIITTRDEH-LLKL--HRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLAVDVLVSFL 218 (352)
Q Consensus 142 ~~~~iiitsr~~~-~~~~--~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~~l 218 (352)
.+..+|.+|.... +... .+....+.+++++.++...++.......... ..++.++.+++.+.|+|..+..+...+
T Consensus 137 ~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 137 PRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVR--ITEEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp CCCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCC--CCHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred CCEEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 2355666665432 1111 1233589999999999999988776332211 234678889999999999988776665
Q ss_pred cCCC---------hhHHHHHHHHHccCCchhHHHHHHhhhccCcHhhhhhhhhhc-cC-CCCCCHHHHHHHHHhcCCCch
Q 045677 219 FGRP---------VDQWRSTQERLKRDPENKILGILQISFDGLKEAEKNIFLDVA-CF-YKWENRDYVSKILDSCGFDPI 287 (352)
Q Consensus 219 ~~~~---------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~l~~ls-~~-~~~~~~~~l~~~~~~~~~~~~ 287 (352)
.... ...+..... .+......++..++..+..+. .+ .+.++...+++.++.......
T Consensus 215 ~~~a~~~~~~~i~~~~~~~~~~------------~~~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~ 282 (324)
T 1hqc_A 215 RDFAQVAGEEVITRERALEALA------------ALGLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLE 282 (324)
T ss_dssp TTTSTTTSCSCCCHHHHHHHHH------------HHTCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHH------------HhcccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHH
Confidence 3311 111111111 122233456676666766544 33 345678888777655433444
Q ss_pred hchHH-HhhccceeecCCCc
Q 045677 288 IGISV-LIEKSLLTVRENDR 306 (352)
Q Consensus 288 ~~l~~-L~~~~li~~~~~~~ 306 (352)
..++. +++.|+|+....|.
T Consensus 283 ~~l~~~~i~~~li~~~~~g~ 302 (324)
T 1hqc_A 283 EVHEPYLIRQGLLKRTPRGR 302 (324)
T ss_dssp HHTHHHHHHTTSEEEETTEE
T ss_pred HHHhHHHHHhcchhcCCccc
Confidence 44555 88899998876554
No 18
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.35 E-value=8.9e-11 Score=105.20 Aligned_cols=199 Identities=16% Similarity=0.135 Sum_probs=115.8
Q ss_pred CCCcCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHHH
Q 045677 6 EIPKELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQKQ 85 (352)
Q Consensus 6 ~~~~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 85 (352)
..-..++||+..++.|...+..+. ..+.++|+|++|+|||++++.+++.+....... .. .... -..+..
T Consensus 13 ~~~~~~vg~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~--~~-------~~~~-~~~~~~ 81 (373)
T 1jr3_A 13 QTFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT--AT-------PCGV-CDNCRE 81 (373)
T ss_dssp CSTTTSCSCHHHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC--SS-------CCSS-SHHHHH
T ss_pred CchhhccCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC--CC-------CCcc-cHHHHH
Confidence 344569999999999999998532 245788999999999999999998864332100 00 0000 001111
Q ss_pred HHHH----HhcccC---CCccchhhhHHHHHhh-hCCceEEEEEeCCCC--hhhhhhhhCCCCCCCCCceEEEEeCchh-
Q 045677 86 LLSD----LLMLAD---NSIRNVYDGVNMIGSR-LRHKKVLLLIDDVAD--VEQLRGLFGKRDWFGLGSMIIITTRDEH- 154 (352)
Q Consensus 86 ~~~~----~~~~~~---~~~~~~~~~~~~~~~~-l~~~~~llvlDd~~~--~~~~~~l~~~~~~~~~~~~iiitsr~~~- 154 (352)
+... +..... ........+...+... ..+++.++||||++. ......++..+.....+..+|++|....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~ 161 (373)
T 1jr3_A 82 IEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQK 161 (373)
T ss_dssp HHTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGG
T ss_pred HhccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHh
Confidence 1100 000000 0111222222211111 134678999999964 3445555554444455667777765432
Q ss_pred H-hhhcCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchhHHHHHHh
Q 045677 155 L-LKLHRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLAVDVLVSF 217 (352)
Q Consensus 155 ~-~~~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~~ 217 (352)
+ .........+.+.+++.++...++.......... ..++.++.+++.++|+|..+......
T Consensus 162 l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~--~~~~a~~~l~~~~~G~~r~~~~~l~~ 223 (373)
T 1jr3_A 162 LPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA--HEPRALQLLARAAEGSLRDALSLTDQ 223 (373)
T ss_dssp SCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC--BCHHHHHHHHHHSSSCHHHHHHHHHH
T ss_pred CcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 1 1122345789999999999999998765221111 22366788999999999988766543
No 19
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.25 E-value=6.5e-11 Score=102.33 Aligned_cols=170 Identities=12% Similarity=-0.011 Sum_probs=99.0
Q ss_pred CcccccHHHHHHHHHHhc--CCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCC------cceeEeeeccccccCCCcHHH
Q 045677 10 ELVGMESRLEKLKFLMCT--GSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEF------DGSSFLADVRERCDKEGSVIS 81 (352)
Q Consensus 10 ~~vGR~~~l~~l~~~l~~--~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 81 (352)
.+.||+.|++++...|.. ..+..+.++|+|++|+|||++++.++..+.... ...+...++...... ..
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~----~~ 96 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGM----DA 96 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC------HH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCH----HH
Confidence 378999999999988775 245668899999999999999999999875432 112222222222222 56
Q ss_pred HHHHHHHHHhcccCCCccchhhhHHHHHhh--hCCceEEEEEeCCCCh---hhhhhhhCCCCCCCCCceEEEEeCchh--
Q 045677 82 LQKQLLSDLLMLADNSIRNVYDGVNMIGSR--LRHKKVLLLIDDVADV---EQLRGLFGKRDWFGLGSMIIITTRDEH-- 154 (352)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~llvlDd~~~~---~~~~~l~~~~~~~~~~~~iiitsr~~~-- 154 (352)
+...++.++.+...........+...+... ..+++++++||+++.. +.+-.++...........+|.++....
T Consensus 97 ~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~ 176 (318)
T 3te6_A 97 LYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTI 176 (318)
T ss_dssp HHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCC
T ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccc
Confidence 666777776543222222222333333322 2457899999999754 223333221111122334444443221
Q ss_pred ---Hhhhc--Cc-ccEEecCCCCHhHHHHHHHhhh
Q 045677 155 ---LLKLH--RV-EEVYKLEALNFDEAFRLFCLKA 183 (352)
Q Consensus 155 ---~~~~~--~~-~~~~~l~~l~~~e~~~ll~~~~ 183 (352)
+.... +. ...+.+++++.+|..+++..+.
T Consensus 177 ~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl 211 (318)
T 3te6_A 177 REQINIMPSLKAHFTEIKLNKVDKNELQQMIITRL 211 (318)
T ss_dssp HHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHH
T ss_pred hhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHH
Confidence 11111 12 2578999999999999998876
No 20
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.23 E-value=3e-10 Score=100.39 Aligned_cols=256 Identities=15% Similarity=0.069 Sum_probs=147.9
Q ss_pred CCCcCcccccHHHHHHHHHHhcC---CCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHH
Q 045677 6 EIPKELVGMESRLEKLKFLMCTG---SNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISL 82 (352)
Q Consensus 6 ~~~~~~vGR~~~l~~l~~~l~~~---~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 82 (352)
..-..++|++..++.+..++... ....+.++|+|++|+|||++|+.+++.....| ...+.... .. ...
T Consensus 26 ~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~----~~~~~~~~----~~-~~~ 96 (338)
T 3pfi_A 26 SNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANI----KTTAAPMI----EK-SGD 96 (338)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCE----EEEEGGGC----CS-HHH
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe----EEecchhc----cc-hhH
Confidence 34467999999999999988752 33446789999999999999999988765432 11111111 01 111
Q ss_pred HHHHHHHHhcccCCCccchhhhHHHHHhhhCCceEEEEEeCCCCh--hhhhhhhCCCCCC------------------CC
Q 045677 83 QKQLLSDLLMLADNSIRNVYDGVNMIGSRLRHKKVLLLIDDVADV--EQLRGLFGKRDWF------------------GL 142 (352)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~------------------~~ 142 (352)
.... +.. ...+.+|+||+++.. .....++..+... .+
T Consensus 97 ~~~~---------------------~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~ 153 (338)
T 3pfi_A 97 LAAI---------------------LTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLP 153 (338)
T ss_dssp HHHH---------------------HHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCC
T ss_pred HHHH---------------------HHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCC
Confidence 1111 111 235669999999643 2222222111100 11
Q ss_pred CceEEEEeCchhH-hhh--cCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchhHHHHHHhhc
Q 045677 143 GSMIIITTRDEHL-LKL--HRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLAVDVLVSFLF 219 (352)
Q Consensus 143 ~~~iiitsr~~~~-~~~--~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~~l~ 219 (352)
+..+|.+|..... .+. .+....+.+++++.++...++........ ....++..+.+.+.+.|+|..+..+...+.
T Consensus 154 ~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~--~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~ 231 (338)
T 3pfi_A 154 KFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLN--KTCEEKAALEIAKRSRSTPRIALRLLKRVR 231 (338)
T ss_dssp CCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT--CEECHHHHHHHHHTTTTCHHHHHHHHHHHH
T ss_pred CeEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3456655554321 111 13346899999999999999887653221 112346778888899999977766554421
Q ss_pred C------C---ChhHHHHHHHHHccCCchhHHHHHHhhhccCcHhhhhhhhhhccCC-CCCCHHHHHHHHHhcCCCchhc
Q 045677 220 G------R---PVDQWRSTQERLKRDPENKILGILQISFDGLKEAEKNIFLDVACFY-KWENRDYVSKILDSCGFDPIIG 289 (352)
Q Consensus 220 ~------~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~l~~ls~~~-~~~~~~~l~~~~~~~~~~~~~~ 289 (352)
. . .......... .+......+...++.++..++... +.++...++..++.+.....+.
T Consensus 232 ~~a~~~~~~~i~~~~~~~~~~------------~~~~~~~~l~~~e~~~l~~l~~~~~~~~~~~~~a~~lg~~~~tl~~~ 299 (338)
T 3pfi_A 232 DFADVNDEEIITEKRANEALN------------SLGVNELGFDAMDLRYLELLTAAKQKPIGLASIAAALSEDENTIEDV 299 (338)
T ss_dssp HHHHHTTCSEECHHHHHHHHH------------HHTCCTTCCCHHHHHHHHHHHHSCSCCBCHHHHHHHTTCCHHHHHHT
T ss_pred HHHHhhcCCccCHHHHHHHHH------------HhCCcccCCCHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHH
Confidence 1 1 1111111111 122223345555566665555442 3457888887776554455556
Q ss_pred hH-HHhhccceeecCCCce
Q 045677 290 IS-VLIEKSLLTVRENDRL 307 (352)
Q Consensus 290 l~-~L~~~~li~~~~~~~~ 307 (352)
++ .|++.|+|.....|+.
T Consensus 300 l~~~l~~~gli~~~~~g~~ 318 (338)
T 3pfi_A 300 IEPYLLANGYIERTAKGRI 318 (338)
T ss_dssp THHHHHHTTSEEEETTEEE
T ss_pred HhHHHHHcCceecCCCccc
Confidence 66 8999999998876654
No 21
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.22 E-value=6.9e-11 Score=95.37 Aligned_cols=49 Identities=12% Similarity=0.195 Sum_probs=42.0
Q ss_pred CCcCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 7 IPKELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 7 ~~~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
.-..++||+.+++.+.+++.. ...+.++|+|++|+|||++++.+++.+.
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 20 KLDPVIGRDEEIRRTIQVLQR--RTKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp CSCCCCSCHHHHHHHHHHHTS--SSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred cccccccchHHHHHHHHHHhc--CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 446799999999999999985 3446789999999999999999998864
No 22
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.19 E-value=5.6e-10 Score=99.83 Aligned_cols=205 Identities=14% Similarity=0.057 Sum_probs=109.2
Q ss_pred CcCcccccHHHHHH---HHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHH
Q 045677 8 PKELVGMESRLEKL---KFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQK 84 (352)
Q Consensus 8 ~~~~vGR~~~l~~l---~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (352)
-+.|+|++..++.+ ...+..+....+.++|+|++|+|||++|+.+++.+....... ...................
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~ 120 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFT--AIAGSEIFSLEMSKTEALT 120 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEE--EEEGGGGSCSSSCHHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcc--cccchhhhhcccchhHHHH
Confidence 45799999997764 444454333346899999999999999999999886442211 1111111111111122222
Q ss_pred HHHHHHhccc----------------------------CC-C---ccchhhhHHHHHhhh--CCc----eEEEEEeCCCC
Q 045677 85 QLLSDLLMLA----------------------------DN-S---IRNVYDGVNMIGSRL--RHK----KVLLLIDDVAD 126 (352)
Q Consensus 85 ~~~~~~~~~~----------------------------~~-~---~~~~~~~~~~~~~~l--~~~----~~llvlDd~~~ 126 (352)
.......... .. . ............... .++ +.+|+||+++.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~ 200 (368)
T 3uk6_A 121 QAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHM 200 (368)
T ss_dssp HHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGG
T ss_pred HHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhccc
Confidence 2222211100 00 0 111111111111111 122 46999999964
Q ss_pred h--hhhhhhhCCCCCCCCCceEEEEeCc-------------hhH-hhhcCcccEEecCCCCHhHHHHHHHhhhcCCCCCc
Q 045677 127 V--EQLRGLFGKRDWFGLGSMIIITTRD-------------EHL-LKLHRVEEVYKLEALNFDEAFRLFCLKAFDTYKPL 190 (352)
Q Consensus 127 ~--~~~~~l~~~~~~~~~~~~iiitsr~-------------~~~-~~~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~ 190 (352)
. .....+...+...... .+++++.. ..+ ....+....+.+++++.++..+++...+......
T Consensus 201 l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~~~~- 278 (368)
T 3uk6_A 201 LDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEEDVE- 278 (368)
T ss_dssp SBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHHTTCC-
T ss_pred cChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHHcCCC-
Confidence 3 3344454444432333 33433321 111 1122334568999999999999998765322211
Q ss_pred hhHHHHHHHHHHHcC-CCchhHHHHHHh
Q 045677 191 EEYLELAKCFVKYAS-GLPLAVDVLVSF 217 (352)
Q Consensus 191 ~~~~~~~~~i~~~~~-G~Pl~i~~~~~~ 217 (352)
..++.++.+++.+. |+|..+..+...
T Consensus 279 -~~~~~l~~l~~~~~~G~~r~~~~ll~~ 305 (368)
T 3uk6_A 279 -MSEDAYTVLTRIGLETSLRYAIQLITA 305 (368)
T ss_dssp -BCHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 23467888999998 898877655443
No 23
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.18 E-value=1.2e-10 Score=97.53 Aligned_cols=175 Identities=14% Similarity=0.079 Sum_probs=101.2
Q ss_pred CcCccccc---HHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHH
Q 045677 8 PKELVGME---SRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQK 84 (352)
Q Consensus 8 ~~~~vGR~---~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (352)
-++|+|++ ..++.+..+... +..+.++|+|++|+|||+|++.++...........++. ........
T Consensus 27 ~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~-~~~~~~~~-------- 95 (242)
T 3bos_A 27 FTSYYPAAGNDELIGALKSAASG--DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIP-LGIHASIS-------- 95 (242)
T ss_dssp TTTSCC--CCHHHHHHHHHHHHT--CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE-GGGGGGSC--------
T ss_pred hhhccCCCCCHHHHHHHHHHHhC--CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE-HHHHHHHH--------
Confidence 35688743 556677777663 24578999999999999999999988765433334433 22211110
Q ss_pred HHHHHHhcccCCCccchhhhHHHHHhhhCCceEEEEEeCCCChhh----hhhhhCCCCCC-CCC-ceEEEEeCchh----
Q 045677 85 QLLSDLLMLADNSIRNVYDGVNMIGSRLRHKKVLLLIDDVADVEQ----LRGLFGKRDWF-GLG-SMIIITTRDEH---- 154 (352)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~~~----~~~l~~~~~~~-~~~-~~iiitsr~~~---- 154 (352)
... ... ..++.+|||||++.... ...+...+... ..+ ..+|+|++...
T Consensus 96 -----------------~~~----~~~-~~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~ 153 (242)
T 3bos_A 96 -----------------TAL----LEG-LEQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAG 153 (242)
T ss_dssp -----------------GGG----GTT-GGGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTT
T ss_pred -----------------HHH----HHh-ccCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHH
Confidence 000 000 13456999999953211 22222221100 112 24777776332
Q ss_pred -----HhhhcCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchhHHHHHHh
Q 045677 155 -----LLKLHRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLAVDVLVSF 217 (352)
Q Consensus 155 -----~~~~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~~ 217 (352)
+.........+.+++++.++..+++......... ...++.++.+++.++|++..+..+...
T Consensus 154 ~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~g~~r~l~~~l~~ 219 (242)
T 3bos_A 154 FVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGL--QLPEDVGRFLLNRMARDLRTLFDVLDR 219 (242)
T ss_dssp CCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTC--CCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHccCCHHHHHHHHHH
Confidence 1111112268999999999999999876532211 123467888999999998877655443
No 24
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.13 E-value=1.4e-09 Score=93.60 Aligned_cols=186 Identities=15% Similarity=0.131 Sum_probs=106.2
Q ss_pred CCCCCcCcccccHHHHHHHHHHhcC-----------CCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeecccc
Q 045677 4 ELEIPKELVGMESRLEKLKFLMCTG-----------SNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRER 72 (352)
Q Consensus 4 ~~~~~~~~vGR~~~l~~l~~~l~~~-----------~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~ 72 (352)
|...-..++|.+..++.|.+.+... ....+.++|+|++|+|||+||+.++......+ ........
T Consensus 12 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~----~~v~~~~~ 87 (285)
T 3h4m_A 12 PNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATF----IRVVGSEL 87 (285)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEE----EEEEGGGG
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCE----EEEehHHH
Confidence 3344567999999999998877531 13446799999999999999999998864432 22212111
Q ss_pred ccCCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHHhhhCCceEEEEEeCCCCh----------------hhhhhhhCC
Q 045677 73 CDKEGSVISLQKQLLSDLLMLADNSIRNVYDGVNMIGSRLRHKKVLLLIDDVADV----------------EQLRGLFGK 136 (352)
Q Consensus 73 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~----------------~~~~~l~~~ 136 (352)
...... .. .......+.......+.+|+||+++.. ..+..++..
T Consensus 88 ~~~~~~--~~------------------~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~ 147 (285)
T 3h4m_A 88 VKKFIG--EG------------------ASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAE 147 (285)
T ss_dssp CCCSTT--HH------------------HHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHH
T ss_pred HHhccc--hH------------------HHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHH
Confidence 111100 00 011112222233456789999999543 112222222
Q ss_pred CC--CCCCCceEEEEeCchhH-----hhhcCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCC-Cc
Q 045677 137 RD--WFGLGSMIIITTRDEHL-----LKLHRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASG-LP 208 (352)
Q Consensus 137 ~~--~~~~~~~iiitsr~~~~-----~~~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G-~P 208 (352)
+. ....+..+|.||..... ....++...+.+++.+.++..+++........... ......++..+.| .|
T Consensus 148 ~~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~---~~~~~~l~~~~~g~~~ 224 (285)
T 3h4m_A 148 MDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAE---DVNLEEIAKMTEGCVG 224 (285)
T ss_dssp HHTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCT---TCCHHHHHHHCTTCCH
T ss_pred hhCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCC---cCCHHHHHHHcCCCCH
Confidence 11 11235567777764322 11124445799999999999999987763322211 1225667788877 55
Q ss_pred hhHHHHHH
Q 045677 209 LAVDVLVS 216 (352)
Q Consensus 209 l~i~~~~~ 216 (352)
..|..++.
T Consensus 225 ~~i~~l~~ 232 (285)
T 3h4m_A 225 AELKAICT 232 (285)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 56655443
No 25
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.11 E-value=2.5e-09 Score=99.72 Aligned_cols=197 Identities=16% Similarity=0.128 Sum_probs=107.5
Q ss_pred CCCCcCcccccHHHHHHHHHHhcC---------------CCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeec
Q 045677 5 LEIPKELVGMESRLEKLKFLMCTG---------------SNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADV 69 (352)
Q Consensus 5 ~~~~~~~vGR~~~l~~l~~~l~~~---------------~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~ 69 (352)
|..-..++|++..++.|.+++... .+..+.++|+|++|+|||++|+.+++.+.. .+...++
T Consensus 35 P~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~----~~i~in~ 110 (516)
T 1sxj_A 35 PTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGY----DILEQNA 110 (516)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTC----EEEEECT
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCC----CEEEEeC
Confidence 334467999999999999999741 013478999999999999999999988731 2222222
Q ss_pred cccccCCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHHhhhCCceEEEEEeCCCCh-----hhhhhhhCCCCCCCCCc
Q 045677 70 RERCDKEGSVISLQKQLLSDLLMLADNSIRNVYDGVNMIGSRLRHKKVLLLIDDVADV-----EQLRGLFGKRDWFGLGS 144 (352)
Q Consensus 70 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~-----~~~~~l~~~~~~~~~~~ 144 (352)
... .. .......+....... .....-..... .....+++.+|+||+++.. ..+..+...+. ..+.
T Consensus 111 s~~----~~-~~~~~~~i~~~~~~~--~~~~~~~~~~~-~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~--~~~~ 180 (516)
T 1sxj_A 111 SDV----RS-KTLLNAGVKNALDNM--SVVGYFKHNEE-AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCR--KTST 180 (516)
T ss_dssp TSC----CC-HHHHHHTGGGGTTBC--CSTTTTTC-----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHH--HCSS
T ss_pred CCc----ch-HHHHHHHHHHHhccc--cHHHHHhhhhh-hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHH--hcCC
Confidence 111 11 122222211111100 00000000000 0012357889999999532 11233332222 1233
Q ss_pred eEEEEeCch---hHhhhcCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchhHHHHHHh
Q 045677 145 MIIITTRDE---HLLKLHRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLAVDVLVSF 217 (352)
Q Consensus 145 ~iiitsr~~---~~~~~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~~ 217 (352)
.+|+++.+. .+....+....+.+++++.++..+++...+...... ..++.+..|++.++|++..+......
T Consensus 181 ~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~--i~~~~l~~la~~s~GdiR~~i~~L~~ 254 (516)
T 1sxj_A 181 PLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFK--LDPNVIDRLIQTTRGDIRQVINLLST 254 (516)
T ss_dssp CEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCC--CCTTHHHHHHHHTTTCHHHHHHHHTH
T ss_pred CEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 455544432 223333455689999999999998887654221111 11255788999999977665544333
No 26
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.09 E-value=2.8e-09 Score=94.66 Aligned_cols=198 Identities=10% Similarity=0.078 Sum_probs=111.9
Q ss_pred CCCCcCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCC--CcceeEeeeccccccCCCcHHHH
Q 045677 5 LEIPKELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHE--FDGSSFLADVRERCDKEGSVISL 82 (352)
Q Consensus 5 ~~~~~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l 82 (352)
|..-..++|++..++.|..++..+. .+.++|+|++|+|||++++.++..+... +...+...+... ... ...
T Consensus 33 p~~~~~i~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~----~~~-~~~ 105 (353)
T 1sxj_D 33 PKNLDEVTAQDHAVTVLKKTLKSAN--LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASD----ERG-ISI 105 (353)
T ss_dssp CSSTTTCCSCCTTHHHHHHHTTCTT--CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSS----CCC-HHH
T ss_pred CCCHHHhhCCHHHHHHHHHHHhcCC--CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcccc----ccc-hHH
Confidence 3344678999999999999998542 2338999999999999999999876421 221222221111 011 122
Q ss_pred HHHHHHHHhcccCCCccchhhhHHHHHhhhCCceEEEEEeCCCCh--hhhhhhhCCCCCCCCCceEEEEeCchh-Hhhh-
Q 045677 83 QKQLLSDLLMLADNSIRNVYDGVNMIGSRLRHKKVLLLIDDVADV--EQLRGLFGKRDWFGLGSMIIITTRDEH-LLKL- 158 (352)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~iiitsr~~~-~~~~- 158 (352)
+......+........... .....-.+.+-+|+||+++.. .....++..+.......++|+++.... +.+.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l 180 (353)
T 1sxj_D 106 VREKVKNFARLTVSKPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPL 180 (353)
T ss_dssp HTTHHHHHHHSCCCCCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHH
T ss_pred HHHHHHHHhhhcccccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchh
Confidence 2222222111111000000 000111235679999999532 333444433333344566676664332 2111
Q ss_pred cCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchhHHHHHH
Q 045677 159 HRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLAVDVLVS 216 (352)
Q Consensus 159 ~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~ 216 (352)
......+.+.+++.++....+...+...... ..++.++.+++.++|+|..+.....
T Consensus 181 ~sR~~~i~~~~~~~~~~~~~l~~~~~~~~~~--i~~~~l~~l~~~~~G~~r~~~~~l~ 236 (353)
T 1sxj_D 181 ASQCSKFRFKALDASNAIDRLRFISEQENVK--CDDGVLERILDISAGDLRRGITLLQ 236 (353)
T ss_dssp HHHSEEEECCCCCHHHHHHHHHHHHHTTTCC--CCHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred hccCceEEeCCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 2234578999999999999998765322211 2346788999999999987655433
No 27
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.04 E-value=4.6e-09 Score=89.78 Aligned_cols=170 Identities=12% Similarity=0.081 Sum_probs=95.0
Q ss_pred CcCcccccHHHHHHHHH-------Hhc-CCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcH
Q 045677 8 PKELVGMESRLEKLKFL-------MCT-GSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSV 79 (352)
Q Consensus 8 ~~~~vGR~~~l~~l~~~-------l~~-~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (352)
...++|+...++.+... +.. .....+.++|+|++|+|||++|+.+++.....| +.+... . ......
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~---~~i~~~-~--~~~g~~ 105 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPF---IKICSP-D--KMIGFS 105 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSE---EEEECG-G--GCTTCC
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCE---EEEeCH-H--HhcCCc
Confidence 45789999887777662 321 245568899999999999999999998754332 112111 0 000000
Q ss_pred HHHHHHHHHHHhcccCCCccchhhhHHHHHhhhCCceEEEEEeCCCCh------------hhhhhhhCCCC---CCCCCc
Q 045677 80 ISLQKQLLSDLLMLADNSIRNVYDGVNMIGSRLRHKKVLLLIDDVADV------------EQLRGLFGKRD---WFGLGS 144 (352)
Q Consensus 80 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~------------~~~~~l~~~~~---~~~~~~ 144 (352)
.. .........+.......+.+|+||+++.. ..+..+...+. ......
T Consensus 106 ~~-----------------~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~ 168 (272)
T 1d2n_A 106 ET-----------------AKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKL 168 (272)
T ss_dssp HH-----------------HHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEE
T ss_pred hH-----------------HHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCE
Confidence 00 00011112223333466889999998542 11222222222 122344
Q ss_pred eEEEEeCchhHhhh----cCcccEEecCCCCH-hHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCC
Q 045677 145 MIIITTRDEHLLKL----HRVEEVYKLEALNF-DEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGL 207 (352)
Q Consensus 145 ~iiitsr~~~~~~~----~~~~~~~~l~~l~~-~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 207 (352)
.||.||........ .++...+.+++++. ++...++.... .. ..+.+..+++.+.|.
T Consensus 169 ~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~---~~----~~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 169 LIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG---NF----KDKERTTIAQQVKGK 229 (272)
T ss_dssp EEEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT---CS----CHHHHHHHHHHHTTS
T ss_pred EEEEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC---CC----CHHHHHHHHHHhcCC
Confidence 46666665533222 23456789999988 66777665532 11 235677888888885
No 28
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.04 E-value=1.6e-09 Score=98.68 Aligned_cols=180 Identities=17% Similarity=0.210 Sum_probs=107.3
Q ss_pred CCcCcccccHHH---HHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHH
Q 045677 7 IPKELVGMESRL---EKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQ 83 (352)
Q Consensus 7 ~~~~~vGR~~~l---~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 83 (352)
.-+.+||.+..+ +.|...+..+ ..+.++|+|++|+|||+||+.+++.....|. ..+. .... ...+
T Consensus 24 ~l~~ivGq~~~~~~~~~L~~~i~~~--~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~----~l~a-----~~~~-~~~i 91 (447)
T 3pvs_A 24 NLAQYIGQQHLLAAGKPLPRAIEAG--HLHSMILWGPPGTGKTTLAEVIARYANADVE----RISA-----VTSG-VKEI 91 (447)
T ss_dssp STTTCCSCHHHHSTTSHHHHHHHHT--CCCEEEEECSTTSSHHHHHHHHHHHTTCEEE----EEET-----TTCC-HHHH
T ss_pred CHHHhCCcHHHHhchHHHHHHHHcC--CCcEEEEECCCCCcHHHHHHHHHHHhCCCeE----EEEe-----ccCC-HHHH
Confidence 346789999998 7888888843 3467999999999999999999988754321 1111 1111 1111
Q ss_pred HHHHHHHhcccCCCccchhhhHHHHHhhhCCceEEEEEeCCCChh--hhhhhhCCCCCCCCCceEEEEe-Cchh--H-hh
Q 045677 84 KQLLSDLLMLADNSIRNVYDGVNMIGSRLRHKKVLLLIDDVADVE--QLRGLFGKRDWFGLGSMIIITT-RDEH--L-LK 157 (352)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~~--~~~~l~~~~~~~~~~~~iiits-r~~~--~-~~ 157 (352)
..++.... .....+++.+|+||+++... ..+.++..+.. ....+|.+| .+.. + ..
T Consensus 92 r~~~~~a~-----------------~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~--~~v~lI~att~n~~~~l~~a 152 (447)
T 3pvs_A 92 REAIERAR-----------------QNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTITFIGATTENPSFELNSA 152 (447)
T ss_dssp HHHHHHHH-----------------HHHHTTCCEEEEEETTTCC------CCHHHHHT--TSCEEEEEESSCGGGSSCHH
T ss_pred HHHHHHHH-----------------HhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc--CceEEEecCCCCcccccCHH
Confidence 22211100 01113567899999996432 23333333321 234444444 4332 1 12
Q ss_pred hcCcccEEecCCCCHhHHHHHHHhhhcCCC-----CCchhHHHHHHHHHHHcCCCchhHHHHHHh
Q 045677 158 LHRVEEVYKLEALNFDEAFRLFCLKAFDTY-----KPLEEYLELAKCFVKYASGLPLAVDVLVSF 217 (352)
Q Consensus 158 ~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~-----~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~~ 217 (352)
.......+.+++++.++...++........ ......++.++.+++.++|++..+..+...
T Consensus 153 L~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le~ 217 (447)
T 3pvs_A 153 LLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEM 217 (447)
T ss_dssp HHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred HhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 223456889999999999999988764311 122234577888999999999877655444
No 29
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.02 E-value=4.2e-09 Score=93.57 Aligned_cols=200 Identities=11% Similarity=0.031 Sum_probs=107.5
Q ss_pred CCCcCcccccHHHHHHHHHH-hcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeee----------------
Q 045677 6 EIPKELVGMESRLEKLKFLM-CTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLAD---------------- 68 (352)
Q Consensus 6 ~~~~~~vGR~~~l~~l~~~l-~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~---------------- 68 (352)
..-..++|++..++.|..++ ..+ .... ++|+|++|+||||+++.++..+.......+.+..
T Consensus 11 ~~~~~~vg~~~~~~~l~~~~~~~~-~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 88 (354)
T 1sxj_E 11 KSLNALSHNEELTNFLKSLSDQPR-DLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVV 88 (354)
T ss_dssp CSGGGCCSCHHHHHHHHTTTTCTT-CCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCE
T ss_pred CCHHHhcCCHHHHHHHHHHHhhCC-CCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeee
Confidence 33467899999999999988 532 2234 8999999999999999999865322211111110
Q ss_pred -------ccccccCCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHHhhhCCceEEEEEeCCCCh--hhhhhhhCCCCC
Q 045677 69 -------VRERCDKEGSVISLQKQLLSDLLMLADNSIRNVYDGVNMIGSRLRHKKVLLLIDDVADV--EQLRGLFGKRDW 139 (352)
Q Consensus 69 -------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~--~~~~~l~~~~~~ 139 (352)
.......... ....+..+..+....... ... .+. .+..++-++|||+++.. .....++..+..
T Consensus 89 ~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~-----~~~-~ls-~l~~~~~vlilDE~~~L~~~~~~~L~~~le~ 160 (354)
T 1sxj_E 89 SSPYHLEITPSDMGNND-RIVIQELLKEVAQMEQVD-----FQD-SKD-GLAHRYKCVIINEANSLTKDAQAALRRTMEK 160 (354)
T ss_dssp ECSSEEEECCC----CC-HHHHHHHHHHHTTTTC-------------------CCEEEEEECTTSSCHHHHHHHHHHHHH
T ss_pred cccceEEecHhhcCCcc-hHHHHHHHHHHHHhcccc-----ccc-ccc-ccCCCCeEEEEeCccccCHHHHHHHHHHHHh
Confidence 0000000000 001111111111000000 000 000 01336779999999653 233444443332
Q ss_pred CCCCceEEEEeCch-hHh-hhcCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhH-HHHHHHHHHHcCCCchhHHHHHH
Q 045677 140 FGLGSMIIITTRDE-HLL-KLHRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEY-LELAKCFVKYASGLPLAVDVLVS 216 (352)
Q Consensus 140 ~~~~~~iiitsr~~-~~~-~~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~-~~~~~~i~~~~~G~Pl~i~~~~~ 216 (352)
...++.+|++|.+. .+. ........+++++++.++...++...+...... .. ++.++.+++.++|++..+.....
T Consensus 161 ~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~l~~i~~~~~G~~r~a~~~l~ 238 (354)
T 1sxj_E 161 YSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQ--LETKDILKRIAQASNGNLRVSLLMLE 238 (354)
T ss_dssp STTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCE--ECCSHHHHHHHHHHTTCHHHHHHHHT
T ss_pred hcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCC--CCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 34467777776643 222 222345789999999999999998765221111 12 36678899999999987765544
Q ss_pred h
Q 045677 217 F 217 (352)
Q Consensus 217 ~ 217 (352)
.
T Consensus 239 ~ 239 (354)
T 1sxj_E 239 S 239 (354)
T ss_dssp H
T ss_pred H
Confidence 3
No 30
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.02 E-value=2.5e-08 Score=87.36 Aligned_cols=183 Identities=17% Similarity=0.149 Sum_probs=105.4
Q ss_pred cCcccccHHHHHHHHHHh----------cCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCc
Q 045677 9 KELVGMESRLEKLKFLMC----------TGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGS 78 (352)
Q Consensus 9 ~~~vGR~~~l~~l~~~l~----------~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (352)
..++|.+..++.|.+.+. ......+.++|+|++|+|||+||+.++......| +..+....
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~----~~v~~~~l------ 87 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF----FSVSSSDL------ 87 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEE----EEEEHHHH------
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCE----EEEchHHH------
Confidence 568999999999998772 1222346799999999999999999998864432 22211111
Q ss_pred HHHHHHHHHHHHhcccCCCccchhhhHHHHHhhhCCceEEEEEeCCCChh-------------hhhhhhCCCC---CCCC
Q 045677 79 VISLQKQLLSDLLMLADNSIRNVYDGVNMIGSRLRHKKVLLLIDDVADVE-------------QLRGLFGKRD---WFGL 142 (352)
Q Consensus 79 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~~-------------~~~~l~~~~~---~~~~ 142 (352)
.....+ .........+.......+.+|+||+++... ....++..+. ....
T Consensus 88 --------~~~~~g------~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 153 (322)
T 3eie_A 88 --------VSKWMG------ESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQ 153 (322)
T ss_dssp --------HTTTGG------GHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCC
T ss_pred --------hhcccc------hHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCC
Confidence 100000 001111122222234567899999996331 1222222221 1234
Q ss_pred CceEEEEeCchhH-hhh--cCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCC-CchhHHHHHHh
Q 045677 143 GSMIIITTRDEHL-LKL--HRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASG-LPLAVDVLVSF 217 (352)
Q Consensus 143 ~~~iiitsr~~~~-~~~--~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G-~Pl~i~~~~~~ 217 (352)
+..||.||..... .+. .++...+.++..+.++..+++.......... .....+..+++.+.| .+-.|..++..
T Consensus 154 ~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~--~~~~~l~~la~~t~g~sg~di~~l~~~ 230 (322)
T 3eie_A 154 GVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCV--LTKEDYRTLGAMTEGYSGSDIAVVVKD 230 (322)
T ss_dssp CEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCC--CCHHHHHHHHHTTTTCCHHHHHHHHHH
T ss_pred ceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCC--CCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 4556656654321 111 1445678899999999999998876432211 123567888999987 45566655544
No 31
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.02 E-value=3e-08 Score=84.09 Aligned_cols=185 Identities=14% Similarity=0.125 Sum_probs=101.9
Q ss_pred CcCcccccHHHHHHHHHHhc---C-------CCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCC
Q 045677 8 PKELVGMESRLEKLKFLMCT---G-------SNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEG 77 (352)
Q Consensus 8 ~~~~vGR~~~l~~l~~~l~~---~-------~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (352)
-..++|.+...+.|.+++.. . ....+.++|+|++|+|||++|+.++......+ +..+.........
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~----~~~~~~~~~~~~~ 80 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPF----LAMAGAEFVEVIG 80 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCE----EEEETTTTSSSST
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCE----EEechHHHHhhcc
Confidence 35689999988888765432 1 12346689999999999999999998765432 2222211111110
Q ss_pred cHHHHHHHHHHHHhcccCCCccchhhhHHHHHhhhCCceEEEEEeCCCCh-----------------hhhhhhhCCCCC-
Q 045677 78 SVISLQKQLLSDLLMLADNSIRNVYDGVNMIGSRLRHKKVLLLIDDVADV-----------------EQLRGLFGKRDW- 139 (352)
Q Consensus 78 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~-----------------~~~~~l~~~~~~- 139 (352)
. .........+.......+.+|+||+++.. ..+..++..+..
T Consensus 81 ~--------------------~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~ 140 (262)
T 2qz4_A 81 G--------------------LGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGM 140 (262)
T ss_dssp T--------------------HHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTC
T ss_pred C--------------------hhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCc
Confidence 0 00011112222333356789999999653 112233222111
Q ss_pred -CCCCceEEEEeCchhHh-hh----cCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCch-hHH
Q 045677 140 -FGLGSMIIITTRDEHLL-KL----HRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPL-AVD 212 (352)
Q Consensus 140 -~~~~~~iiitsr~~~~~-~~----~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl-~i~ 212 (352)
...+..+|.||...... .. .+....+.++..+.++..+++........... ........++..+.|++- .|.
T Consensus 141 ~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~-~~~~~~~~l~~~~~g~~~~~l~ 219 (262)
T 2qz4_A 141 GTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQ-SSTFYSQRLAELTPGFSGADIA 219 (262)
T ss_dssp CTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCB-THHHHHHHHHHTCTTCCHHHHH
T ss_pred CCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCc-chhhHHHHHHHHCCCCCHHHHH
Confidence 12345566666543211 11 13446788999999999998887653222221 222345778888888754 565
Q ss_pred HHHHh
Q 045677 213 VLVSF 217 (352)
Q Consensus 213 ~~~~~ 217 (352)
.++..
T Consensus 220 ~l~~~ 224 (262)
T 2qz4_A 220 NICNE 224 (262)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55444
No 32
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.02 E-value=2.4e-08 Score=88.72 Aligned_cols=184 Identities=11% Similarity=0.032 Sum_probs=104.6
Q ss_pred CCcCcccccHHHHHHHHHHhc----------CCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCC
Q 045677 7 IPKELVGMESRLEKLKFLMCT----------GSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKE 76 (352)
Q Consensus 7 ~~~~~vGR~~~l~~l~~~l~~----------~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (352)
.-..++|.+..++.|.+.+.. .....+.++|+|++|+|||+||+.++...... ++..+........
T Consensus 82 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~----~~~i~~~~l~~~~ 157 (357)
T 3d8b_A 82 NWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGAT----FFSISASSLTSKW 157 (357)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTCE----EEEEEGGGGCCSS
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCCe----EEEEehHHhhccc
Confidence 336789999999999887752 12345679999999999999999999876432 2222222221111
Q ss_pred CcHHHHHHHHHHHHhcccCCCccchhhhH-HHHHhhhCCceEEEEEeCCCCh-------------hhhhhhhCCCC----
Q 045677 77 GSVISLQKQLLSDLLMLADNSIRNVYDGV-NMIGSRLRHKKVLLLIDDVADV-------------EQLRGLFGKRD---- 138 (352)
Q Consensus 77 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~llvlDd~~~~-------------~~~~~l~~~~~---- 138 (352)
.. ...... ..+.......+.+|+||+++.. .....++..+.
T Consensus 158 ~g---------------------~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~ 216 (357)
T 3d8b_A 158 VG---------------------EGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATT 216 (357)
T ss_dssp TT---------------------HHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC---
T ss_pred cc---------------------hHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccc
Confidence 00 001111 1112222356789999999432 11222222211
Q ss_pred CCCCCceEEEEeCchh-Hhhh--cCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCC-CchhHHHH
Q 045677 139 WFGLGSMIIITTRDEH-LLKL--HRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASG-LPLAVDVL 214 (352)
Q Consensus 139 ~~~~~~~iiitsr~~~-~~~~--~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G-~Pl~i~~~ 214 (352)
....+..||.||.... +... .+....+.++..+.++..+++...+...... .....++.+++.+.| .+..|..+
T Consensus 217 ~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~--l~~~~l~~la~~t~G~s~~dl~~l 294 (357)
T 3d8b_A 217 SSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCC--LSEEEIEQIVQQSDAFSGADMTQL 294 (357)
T ss_dssp -CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBC--CCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred cCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCC--ccHHHHHHHHHHcCCCCHHHHHHH
Confidence 1123445555665332 1111 1344578899999999888887765322111 123668889999998 55566666
Q ss_pred HHh
Q 045677 215 VSF 217 (352)
Q Consensus 215 ~~~ 217 (352)
+..
T Consensus 295 ~~~ 297 (357)
T 3d8b_A 295 CRE 297 (357)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 33
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.00 E-value=2.9e-09 Score=92.75 Aligned_cols=150 Identities=15% Similarity=0.151 Sum_probs=87.7
Q ss_pred CcccccHHHHHHHHHHhcC-------------CCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCc---ceeEeeeccccc
Q 045677 10 ELVGMESRLEKLKFLMCTG-------------SNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFD---GSSFLADVRERC 73 (352)
Q Consensus 10 ~~vGR~~~l~~l~~~l~~~-------------~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~---~~~~~~~~~~~~ 73 (352)
.++|.+...+.|.+++... ......++|+|++|+|||++|+.+++.+..... ..+...+.....
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~ 111 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV 111 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh
Confidence 5899999998888765421 233457899999999999999999887643211 122222221111
Q ss_pred cCC-CcHHHHHHHHHHHHhcccCCCccchhhhHHHHHhhhCCceEEEEEeCCC-----------ChhhhhhhhCCCCCCC
Q 045677 74 DKE-GSVISLQKQLLSDLLMLADNSIRNVYDGVNMIGSRLRHKKVLLLIDDVA-----------DVEQLRGLFGKRDWFG 141 (352)
Q Consensus 74 ~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~-----------~~~~~~~l~~~~~~~~ 141 (352)
... +. ........+... .+.+|+||+++ .......++..+....
T Consensus 112 ~~~~g~---------------------~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~ 167 (309)
T 3syl_A 112 GQYIGH---------------------TAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNR 167 (309)
T ss_dssp CSSTTC---------------------HHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCT
T ss_pred hhcccc---------------------cHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCC
Confidence 100 00 001111111111 23599999996 3333445554444334
Q ss_pred CCceEEEEeCchhHhh-------h-cCcccEEecCCCCHhHHHHHHHhhh
Q 045677 142 LGSMIIITTRDEHLLK-------L-HRVEEVYKLEALNFDEAFRLFCLKA 183 (352)
Q Consensus 142 ~~~~iiitsr~~~~~~-------~-~~~~~~~~l~~l~~~e~~~ll~~~~ 183 (352)
.+..+|+|+....... . .+....+.+++++.++...++....
T Consensus 168 ~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l 217 (309)
T 3syl_A 168 DDLVVILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHML 217 (309)
T ss_dssp TTCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHH
T ss_pred CCEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHH
Confidence 5667777776432211 1 1233689999999999999987765
No 34
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.99 E-value=5.8e-09 Score=95.17 Aligned_cols=186 Identities=17% Similarity=0.103 Sum_probs=104.5
Q ss_pred cCcc-cccHHH--HHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCc-ceeEeeeccccccCCCcHHHHHH
Q 045677 9 KELV-GMESRL--EKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFD-GSSFLADVRERCDKEGSVISLQK 84 (352)
Q Consensus 9 ~~~v-GR~~~l--~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~ 84 (352)
+.|+ |....+ ..+......... ...++|+|++|+|||+||+.+++.+...+. ..+.+.+. ..+..
T Consensus 105 d~fv~g~~n~~a~~~~~~~a~~~~~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~----------~~~~~ 173 (440)
T 2z4s_A 105 ENFVVGPGNSFAYHAALEVAKHPGR-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS----------EKFLN 173 (440)
T ss_dssp GGCCCCTTTHHHHHHHHHHHHSTTS-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEH----------HHHHH
T ss_pred hhcCCCCchHHHHHHHHHHHhCCCC-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH----------HHHHH
Confidence 3466 755444 344444443322 678999999999999999999988754432 22222221 12222
Q ss_pred HHHHHHhcccCCCccchhhhHHHHHhhhCCceEEEEEeCCCCh----hhhhhhhCCCCC-CCCCceEEEEeCchh-----
Q 045677 85 QLLSDLLMLADNSIRNVYDGVNMIGSRLRHKKVLLLIDDVADV----EQLRGLFGKRDW-FGLGSMIIITTRDEH----- 154 (352)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~----~~~~~l~~~~~~-~~~~~~iiitsr~~~----- 154 (352)
.+...+... . ...+.......+.+|+|||++.. ...+.++..+.. ...+..||+||.+..
T Consensus 174 ~~~~~~~~~------~----~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~ 243 (440)
T 2z4s_A 174 DLVDSMKEG------K----LNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSE 243 (440)
T ss_dssp HHHHHHHTT------C----HHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSS
T ss_pred HHHHHHHcc------c----HHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHH
Confidence 333222211 0 11233333336779999999532 222333332211 134667888887531
Q ss_pred ----HhhhcCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchhHHHHHHh
Q 045677 155 ----LLKLHRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLAVDVLVSF 217 (352)
Q Consensus 155 ----~~~~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~~ 217 (352)
+...+.....+.+++++.++...++...+...... ..++.+..|+..+.|++.-+..+...
T Consensus 244 l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~--i~~e~l~~la~~~~gn~R~l~~~L~~ 308 (440)
T 2z4s_A 244 FQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGE--LPEEVLNFVAENVDDNLRRLRGAIIK 308 (440)
T ss_dssp CCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCC--CCTTHHHHHHHHCCSCHHHHHHHHHH
T ss_pred HHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 11112223578899999999999988765211111 11255778899999999877655443
No 35
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.97 E-value=3.5e-08 Score=86.51 Aligned_cols=183 Identities=16% Similarity=0.135 Sum_probs=100.8
Q ss_pred CcCcc-cccHH--HHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHH
Q 045677 8 PKELV-GMESR--LEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQK 84 (352)
Q Consensus 8 ~~~~v-GR~~~--l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (352)
-++|+ |.... .+.+.............++|+|++|+|||+|++.+++.+.......+++. . ..+..
T Consensus 10 f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~-~----------~~~~~ 78 (324)
T 1l8q_A 10 LENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSS-A----------DDFAQ 78 (324)
T ss_dssp SSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEE-H----------HHHHH
T ss_pred cccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE-H----------HHHHH
Confidence 34565 65443 34555555543334567999999999999999999988754322223332 2 12222
Q ss_pred HHHHHHhcccCCCccchhhhHHHHHhhhCCceEEEEEeCCCChh----hhhhhhCCCCC-CCCCceEEEEeCchh-----
Q 045677 85 QLLSDLLMLADNSIRNVYDGVNMIGSRLRHKKVLLLIDDVADVE----QLRGLFGKRDW-FGLGSMIIITTRDEH----- 154 (352)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~~----~~~~l~~~~~~-~~~~~~iiitsr~~~----- 154 (352)
.+...+... .. ..+.... ..+.+|+|||++... ....++..+.. ...+..+|+|+.+..
T Consensus 79 ~~~~~~~~~------~~----~~~~~~~-~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~ 147 (324)
T 1l8q_A 79 AMVEHLKKG------TI----NEFRNMY-KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDG 147 (324)
T ss_dssp HHHHHHHHT------CH----HHHHHHH-HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTT
T ss_pred HHHHHHHcC------cH----HHHHHHh-cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHH
Confidence 222222110 11 1122222 236799999995432 22222222210 123557777775431
Q ss_pred ----HhhhcCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchhHHHHHH
Q 045677 155 ----LLKLHRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLAVDVLVS 216 (352)
Q Consensus 155 ----~~~~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~ 216 (352)
+.........+.+++ +.++...++...+..... ...++.++.+++.+ |++-.+..+..
T Consensus 148 l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~--~l~~~~l~~l~~~~-g~~r~l~~~l~ 209 (324)
T 1l8q_A 148 VSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNL--ELRKEVIDYLLENT-KNVREIEGKIK 209 (324)
T ss_dssp SCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTC--CCCHHHHHHHHHHC-SSHHHHHHHHH
T ss_pred hhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHhC-CCHHHHHHHHH
Confidence 111112225789999 999999999877632221 12246788899999 98876654433
No 36
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.95 E-value=1.2e-07 Score=82.84 Aligned_cols=184 Identities=16% Similarity=0.102 Sum_probs=103.8
Q ss_pred cCcccccHHHHHHHHHHhc----------CCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCc
Q 045677 9 KELVGMESRLEKLKFLMCT----------GSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGS 78 (352)
Q Consensus 9 ~~~vGR~~~l~~l~~~l~~----------~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (352)
..++|-+...+.|.+.+.. .....+.++|+||+|+|||+||+.++...... .++...........
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~---~~~~i~~~~l~~~~-- 86 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNS---TFFSISSSDLVSKW-- 86 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSC---EEEEEECCSSCCSS--
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCC---cEEEEEhHHHHhhh--
Confidence 5689999988888876631 12234679999999999999999999886211 12222111111000
Q ss_pred HHHHHHHHHHHHhcccCCCccchhhhHHHHHhhhCCceEEEEEeCCCChh-------------hhhhhhCCCC---CCCC
Q 045677 79 VISLQKQLLSDLLMLADNSIRNVYDGVNMIGSRLRHKKVLLLIDDVADVE-------------QLRGLFGKRD---WFGL 142 (352)
Q Consensus 79 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~~-------------~~~~l~~~~~---~~~~ 142 (352)
. ..........+......++.+|+||+++... ....++..+. ....
T Consensus 87 ----------------~--g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~ 148 (322)
T 1xwi_A 87 ----------------L--GESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDND 148 (322)
T ss_dssp ----------------C--CSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCT
T ss_pred ----------------h--hHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCC
Confidence 0 0011111112222224578899999996431 1122222211 1123
Q ss_pred CceEEEEeCchh-Hhhh--cCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCC-chhHHHHHHh
Q 045677 143 GSMIIITTRDEH-LLKL--HRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGL-PLAVDVLVSF 217 (352)
Q Consensus 143 ~~~iiitsr~~~-~~~~--~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~-Pl~i~~~~~~ 217 (352)
+..+|.||.... +.+. .+....+.++..+.++..+++.......... ..+..+..+++.+.|+ +..|..++..
T Consensus 149 ~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~--l~~~~l~~la~~t~G~sgadl~~l~~~ 225 (322)
T 1xwi_A 149 GILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNS--LTEADFRELGRKTDGYSGADISIIVRD 225 (322)
T ss_dssp TEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBC--CCHHHHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCC--CCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 445555554331 1111 1455678899999999999888766332211 1235678899999987 5557666554
No 37
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.94 E-value=5.9e-08 Score=86.00 Aligned_cols=184 Identities=18% Similarity=0.161 Sum_probs=104.1
Q ss_pred CcCcccccHHHHHHHHHHhc----------CCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCC
Q 045677 8 PKELVGMESRLEKLKFLMCT----------GSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEG 77 (352)
Q Consensus 8 ~~~~vGR~~~l~~l~~~l~~----------~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (352)
=..++|.+..++.|.+.+.. .....+.++|+|++|+|||+||+.++......| +..+....
T Consensus 50 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~----~~v~~~~l----- 120 (355)
T 2qp9_X 50 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF----FSVSSSDL----- 120 (355)
T ss_dssp GGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEE----EEEEHHHH-----
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE----EEeeHHHH-----
Confidence 35689999999999887631 112235689999999999999999998875332 22211111
Q ss_pred cHHHHHHHHHHHHhcccCCCccchhhhHHHHHhhhCCceEEEEEeCCCChh-------------hhhhhhCCCC---CCC
Q 045677 78 SVISLQKQLLSDLLMLADNSIRNVYDGVNMIGSRLRHKKVLLLIDDVADVE-------------QLRGLFGKRD---WFG 141 (352)
Q Consensus 78 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~~-------------~~~~l~~~~~---~~~ 141 (352)
...+. . .........+.......+.+|+||+++... ....++..+. ...
T Consensus 121 ---------~~~~~----g--~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~ 185 (355)
T 2qp9_X 121 ---------VSKWM----G--ESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDS 185 (355)
T ss_dssp ---------HSCC---------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---
T ss_pred ---------hhhhc----c--hHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccC
Confidence 00000 0 001111112222224578899999996432 1223322221 112
Q ss_pred CCceEEEEeCchh-Hhhh--cCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCC-CchhHHHHHHh
Q 045677 142 LGSMIIITTRDEH-LLKL--HRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASG-LPLAVDVLVSF 217 (352)
Q Consensus 142 ~~~~iiitsr~~~-~~~~--~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G-~Pl~i~~~~~~ 217 (352)
.+..||.||.... +... .+....+.++..+.++..+++.......... .....+..|++.+.| .+..|..++..
T Consensus 186 ~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~--~~~~~l~~la~~t~G~sg~dl~~l~~~ 263 (355)
T 2qp9_X 186 QGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSV--LTKEDYRTLGAMTEGYSGSDIAVVVKD 263 (355)
T ss_dssp CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBC--CCHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCC--CCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3455555655332 1111 1455678899999999999988776332211 123567889999998 45566665543
No 38
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.93 E-value=2e-08 Score=88.10 Aligned_cols=184 Identities=15% Similarity=0.082 Sum_probs=106.4
Q ss_pred CCCcCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHHH
Q 045677 6 EIPKELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQKQ 85 (352)
Q Consensus 6 ~~~~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 85 (352)
..-+.++|++..++.|.+++..+ ...+.++++|++|+|||++++.+++.+... +...+... .. ...+..
T Consensus 23 ~~~~~ivg~~~~~~~l~~~l~~~-~~~~~~L~~G~~G~GKT~la~~la~~l~~~----~~~i~~~~----~~--~~~i~~ 91 (324)
T 3u61_B 23 STIDECILPAFDKETFKSITSKG-KIPHIILHSPSPGTGKTTVAKALCHDVNAD----MMFVNGSD----CK--IDFVRG 91 (324)
T ss_dssp CSTTTSCCCHHHHHHHHHHHHTT-CCCSEEEECSSTTSSHHHHHHHHHHHTTEE----EEEEETTT----CC--HHHHHT
T ss_pred CCHHHHhCcHHHHHHHHHHHHcC-CCCeEEEeeCcCCCCHHHHHHHHHHHhCCC----EEEEcccc----cC--HHHHHH
Confidence 34467999999999999999853 234678889999999999999999887422 22222111 11 122222
Q ss_pred HHHHHhcccCCCccchhhhHHHHHhhhCCceEEEEEeCCCChh---hhhhhhCCCCCCCCCceEEEEeCchh-Hhh-hcC
Q 045677 86 LLSDLLMLADNSIRNVYDGVNMIGSRLRHKKVLLLIDDVADVE---QLRGLFGKRDWFGLGSMIIITTRDEH-LLK-LHR 160 (352)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~~---~~~~l~~~~~~~~~~~~iiitsr~~~-~~~-~~~ 160 (352)
.+........ ..+.+.+++||+++... ....+...+.....++++|+|+.... +.+ ...
T Consensus 92 ~~~~~~~~~~----------------~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~s 155 (324)
T 3u61_B 92 PLTNFASAAS----------------FDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQS 155 (324)
T ss_dssp HHHHHHHBCC----------------CSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHH
T ss_pred HHHHHHhhcc----------------cCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHh
Confidence 2222111100 12467899999998654 34444443332234667777776542 111 112
Q ss_pred cccEEecCCCCHhHHHHHHHh-------hhcCCCCCchhHH-HHHHHHHHHcCCCchhHHHHHHhh
Q 045677 161 VEEVYKLEALNFDEAFRLFCL-------KAFDTYKPLEEYL-ELAKCFVKYASGLPLAVDVLVSFL 218 (352)
Q Consensus 161 ~~~~~~l~~l~~~e~~~ll~~-------~~~~~~~~~~~~~-~~~~~i~~~~~G~Pl~i~~~~~~l 218 (352)
....+.+++++.++...++.. .+...... ..+ +.++.+++.++|++..+......+
T Consensus 156 R~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~--~~~~~~~~~l~~~~~gd~R~a~~~L~~~ 219 (324)
T 3u61_B 156 RCRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIA--IADMKVVAALVKKNFPDFRKTIGELDSY 219 (324)
T ss_dssp HSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCC--BSCHHHHHHHHHHTCSCTTHHHHHHHHH
T ss_pred hCcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCC--CCcHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 345799999998874333222 11110111 112 667788899999888665444443
No 39
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.93 E-value=3.9e-08 Score=86.49 Aligned_cols=181 Identities=14% Similarity=0.077 Sum_probs=103.9
Q ss_pred cHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHHHHHHHH----
Q 045677 15 ESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQKQLLSDL---- 90 (352)
Q Consensus 15 ~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---- 90 (352)
+...+.|...+.++ .-.+.++++|++|+|||++|..+++.+........ . ..+. -..+..+....
T Consensus 8 ~~~~~~l~~~i~~~-~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~-~--------~c~~-c~~c~~~~~~~~~d~ 76 (334)
T 1a5t_A 8 RPDFEKLVASYQAG-RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGH-K--------SCGH-CRGCQLMQAGTHPDY 76 (334)
T ss_dssp HHHHHHHHHHHHTT-CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTT-B--------CCSC-SHHHHHHHHTCCTTE
T ss_pred HHHHHHHHHHHHcC-CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCC-C--------CCCC-CHHHHHHhcCCCCCE
Confidence 44556777777643 23567899999999999999999988643321000 0 0000 00111111100
Q ss_pred hcccC---CCccchhhhHHHHHhhh-----CCceEEEEEeCCCC--hhhhhhhhCCCCCCCCCceEEEEeCchh-Hhhh-
Q 045677 91 LMLAD---NSIRNVYDGVNMIGSRL-----RHKKVLLLIDDVAD--VEQLRGLFGKRDWFGLGSMIIITTRDEH-LLKL- 158 (352)
Q Consensus 91 ~~~~~---~~~~~~~~~~~~~~~~l-----~~~~~llvlDd~~~--~~~~~~l~~~~~~~~~~~~iiitsr~~~-~~~~- 158 (352)
..... ......++.. .+.+.+ .+++-++|||+++. ......++..+...+.++.+|++|.+.. +.+.
T Consensus 77 ~~~~~~~~~~~~~i~~ir-~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti 155 (334)
T 1a5t_A 77 YTLAPEKGKNTLGVDAVR-EVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATL 155 (334)
T ss_dssp EEECCCTTCSSBCHHHHH-HHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHH
T ss_pred EEEeccccCCCCCHHHHH-HHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHH
Confidence 00000 0111122211 222222 24578999999974 3445566665555556677777665542 2222
Q ss_pred cCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchhHHHH
Q 045677 159 HRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLAVDVL 214 (352)
Q Consensus 159 ~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~ 214 (352)
......+.+++++.++..+++.+.. . ..++.+..+++.++|.|..+...
T Consensus 156 ~SRc~~~~~~~~~~~~~~~~L~~~~---~----~~~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 156 RSRCRLHYLAPPPEQYAVTWLSREV---T----MSQDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp HTTSEEEECCCCCHHHHHHHHHHHC---C----CCHHHHHHHHHHTTTCHHHHHHT
T ss_pred hhcceeeeCCCCCHHHHHHHHHHhc---C----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 3445689999999999999998875 1 12355678999999999866543
No 40
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.92 E-value=6.2e-08 Score=87.11 Aligned_cols=184 Identities=14% Similarity=0.058 Sum_probs=101.2
Q ss_pred CcCcccccHHHHHHHHHHhc----------CCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCC
Q 045677 8 PKELVGMESRLEKLKFLMCT----------GSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEG 77 (352)
Q Consensus 8 ~~~~vGR~~~l~~l~~~l~~----------~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (352)
-..++|.+..++.|.+++.. .....+.++|+|++|+|||+||+.++...... ++..++......
T Consensus 114 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~----~~~v~~~~l~~~-- 187 (389)
T 3vfd_A 114 FDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNAT----FFNISAASLTSK-- 187 (389)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCE----EEEECSCCC-----
T ss_pred hHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCc----EEEeeHHHhhcc--
Confidence 35789999999999988731 11234679999999999999999998875432 222222111110
Q ss_pred cHHHHHHHHHHHHhcccCCCccchhhhHHHHHhhhCCceEEEEEeCCCCh-------------hhhhhhhCCCC----CC
Q 045677 78 SVISLQKQLLSDLLMLADNSIRNVYDGVNMIGSRLRHKKVLLLIDDVADV-------------EQLRGLFGKRD----WF 140 (352)
Q Consensus 78 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~-------------~~~~~l~~~~~----~~ 140 (352)
.. + .........+.......+.+|+||+++.. .....++..+. ..
T Consensus 188 ----~~--------g------~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 249 (389)
T 3vfd_A 188 ----YV--------G------EGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAG 249 (389)
T ss_dssp ----------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC---
T ss_pred ----cc--------c------hHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccC
Confidence 00 0 00011111122222345679999999643 01112221111 11
Q ss_pred CCCceEEEEeCchh-Hhhh--cCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCch-hHHHHHH
Q 045677 141 GLGSMIIITTRDEH-LLKL--HRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPL-AVDVLVS 216 (352)
Q Consensus 141 ~~~~~iiitsr~~~-~~~~--~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl-~i~~~~~ 216 (352)
.....||.||.... +... .++...+.++..+.++...++...+...... .....+..++..+.|+.- .|..++.
T Consensus 250 ~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~--l~~~~~~~la~~~~g~~~~~l~~L~~ 327 (389)
T 3vfd_A 250 DDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSP--LTQKELAQLARMTDGYSGSDLTALAK 327 (389)
T ss_dssp --CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCC--SCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 23445555555322 1111 1344578899999999999888766332211 223567888899988654 5555544
Q ss_pred h
Q 045677 217 F 217 (352)
Q Consensus 217 ~ 217 (352)
.
T Consensus 328 ~ 328 (389)
T 3vfd_A 328 D 328 (389)
T ss_dssp H
T ss_pred H
Confidence 3
No 41
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.91 E-value=2.5e-09 Score=85.63 Aligned_cols=50 Identities=12% Similarity=0.199 Sum_probs=42.5
Q ss_pred CCcCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcC
Q 045677 7 IPKELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSH 58 (352)
Q Consensus 7 ~~~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~ 58 (352)
.-..++||+.+++.+.+.+.. ...+.++|+|++|+|||++|+.+++.+..
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~--~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 20 KLDPVIGRDTEIRRAIQILSR--RTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp CSCCCCSCHHHHHHHHHHHTS--SSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred ccchhhcchHHHHHHHHHHhC--CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 346799999999999999984 34567899999999999999999988644
No 42
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.91 E-value=1.2e-07 Score=83.56 Aligned_cols=185 Identities=12% Similarity=0.141 Sum_probs=106.0
Q ss_pred cCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCC-CcceeEeeeccccccCCCcHHHHHHHHH
Q 045677 9 KELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHE-FDGSSFLADVRERCDKEGSVISLQKQLL 87 (352)
Q Consensus 9 ~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 87 (352)
..++|.+..++.|...+..+ +.+.++++||+|+||||+++.++..+... +...+.-.+. +.. .. ....+...
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g--~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~---~~~-~~-~~~ir~~i 97 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEG--KLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNA---SDD-RG-IDVVRNQI 97 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTT--CCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECT---TSC-CS-HHHHHTHH
T ss_pred HHhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcC---ccc-cc-HHHHHHHH
Confidence 55789999999999998853 32338899999999999999999886432 1111111111 110 01 11111111
Q ss_pred HHHhcccCCCccchhhhHHHHHhhhCCceEEEEEeCCCC--hhhhhhhhCCCCCCCCCceEEEEeCchh-Hhh-hcCccc
Q 045677 88 SDLLMLADNSIRNVYDGVNMIGSRLRHKKVLLLIDDVAD--VEQLRGLFGKRDWFGLGSMIIITTRDEH-LLK-LHRVEE 163 (352)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~--~~~~~~l~~~~~~~~~~~~iiitsr~~~-~~~-~~~~~~ 163 (352)
..+..... ...+.+-++|+|+++. ......++..+......+.+|+++.... +.+ ......
T Consensus 98 ~~~~~~~~---------------~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~ 162 (340)
T 1sxj_C 98 KDFASTRQ---------------IFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCT 162 (340)
T ss_dssp HHHHHBCC---------------SSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred HHHHhhcc---------------cCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhce
Confidence 11110000 0123467999999953 2334444443333345666766665332 111 123345
Q ss_pred EEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchhHHHHHHh
Q 045677 164 VYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLAVDVLVSF 217 (352)
Q Consensus 164 ~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~~ 217 (352)
.+.+.+++.++..+.+...+...... ..++..+.+++.++|.+.-+......
T Consensus 163 ~~~~~~l~~~~~~~~l~~~~~~~~~~--i~~~~~~~i~~~s~G~~r~~~~~l~~ 214 (340)
T 1sxj_C 163 RFRFQPLPQEAIERRIANVLVHEKLK--LSPNAEKALIELSNGDMRRVLNVLQS 214 (340)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTTCC--BCHHHHHHHHHHHTTCHHHHHHHTTT
T ss_pred eEeccCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 78999999999998887765221111 22366788999999998865444333
No 43
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.88 E-value=1.2e-07 Score=86.51 Aligned_cols=185 Identities=18% Similarity=0.142 Sum_probs=105.2
Q ss_pred CcCcccccHHHHHHHHHHhc----------CCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCC
Q 045677 8 PKELVGMESRLEKLKFLMCT----------GSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEG 77 (352)
Q Consensus 8 ~~~~vGR~~~l~~l~~~l~~----------~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (352)
-..++|.+...+.|.+.+.. .....+.++|+||+|+|||+||+.++..... ..++..+...
T Consensus 133 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~---~~~~~v~~~~------ 203 (444)
T 2zan_A 133 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN---STFFSISSSD------ 203 (444)
T ss_dssp GGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCS---SEEEEECCC-------
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCC---CCEEEEeHHH------
Confidence 36689999999999887631 1123467999999999999999999988621 1122221111
Q ss_pred cHHHHHHHHHHHHhcccCCCccchhhhHHHHHhhhCCceEEEEEeCCCCh-------------hhhhhhhCCCCC---CC
Q 045677 78 SVISLQKQLLSDLLMLADNSIRNVYDGVNMIGSRLRHKKVLLLIDDVADV-------------EQLRGLFGKRDW---FG 141 (352)
Q Consensus 78 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~-------------~~~~~l~~~~~~---~~ 141 (352)
+ .....+.. .... ...+.......+.+|+||+++.. .....++..+.. ..
T Consensus 204 ----l----~~~~~g~~---~~~~---~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~ 269 (444)
T 2zan_A 204 ----L----VSKWLGES---EKLV---KNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDN 269 (444)
T ss_dssp ----------------C---CCTH---HHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCC
T ss_pred ----H----HhhhcchH---HHHH---HHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCC
Confidence 0 01111110 1111 12222222457889999999643 123445554432 13
Q ss_pred CCceEEEEeCchh-Hhhh--cCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCC-chhHHHHHHh
Q 045677 142 LGSMIIITTRDEH-LLKL--HRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGL-PLAVDVLVSF 217 (352)
Q Consensus 142 ~~~~iiitsr~~~-~~~~--~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~-Pl~i~~~~~~ 217 (352)
.+..||.||.... +.+. .++...+.++..+.++...++........ .......+..|++.+.|+ +..|..++..
T Consensus 270 ~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~--~~l~~~~l~~la~~t~G~sgadl~~l~~~ 347 (444)
T 2zan_A 270 DGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQ--NSLTEADFQELGRKTDGYSGADISIIVRD 347 (444)
T ss_dssp SSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSC--EECCHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCC--CCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 4455665665432 1111 14445788888888888888877663221 111235678899999984 5566655544
No 44
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.86 E-value=2.4e-07 Score=80.11 Aligned_cols=184 Identities=15% Similarity=0.093 Sum_probs=101.7
Q ss_pred CCcCcccccHHHHHHHHHHhc----------CCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCC
Q 045677 7 IPKELVGMESRLEKLKFLMCT----------GSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKE 76 (352)
Q Consensus 7 ~~~~~vGR~~~l~~l~~~l~~----------~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (352)
.-..++|.+..++.|.+.+.. .....+.++|+|++|+|||++|+.++......| +..+........
T Consensus 19 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~----~~i~~~~l~~~~ 94 (297)
T 3b9p_A 19 EWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATF----LNISAASLTSKY 94 (297)
T ss_dssp CGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEE----EEEESTTTSSSS
T ss_pred CHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe----EEeeHHHHhhcc
Confidence 336799999999999887742 112346789999999999999999998764322 122111111000
Q ss_pred CcHHHHHHHHHHHHhcccCCCccchhhhH-HHHHhhhCCceEEEEEeCCCChh-------------hhhhhhCCC---CC
Q 045677 77 GSVISLQKQLLSDLLMLADNSIRNVYDGV-NMIGSRLRHKKVLLLIDDVADVE-------------QLRGLFGKR---DW 139 (352)
Q Consensus 77 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~llvlDd~~~~~-------------~~~~l~~~~---~~ 139 (352)
........ ..+.......+.+|+||+++... ....++..+ ..
T Consensus 95 ---------------------~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 153 (297)
T 3b9p_A 95 ---------------------VGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPG 153 (297)
T ss_dssp ---------------------CSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC-
T ss_pred ---------------------cchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccc
Confidence 00011111 11222223567899999995321 111222111 11
Q ss_pred --CCCCceEEEEeCchh-Hhhh--cCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCch-hHHH
Q 045677 140 --FGLGSMIIITTRDEH-LLKL--HRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPL-AVDV 213 (352)
Q Consensus 140 --~~~~~~iiitsr~~~-~~~~--~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl-~i~~ 213 (352)
...+..||.||.... +... .+....+.++..+.++...++.......... .....+..+++.+.|++- .|..
T Consensus 154 ~~~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~--~~~~~~~~la~~~~g~~~~~l~~ 231 (297)
T 3b9p_A 154 NPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSP--LDTEALRRLAKITDGYSGSDLTA 231 (297)
T ss_dssp -----CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCC--SCHHHHHHHHHHTTTCCHHHHHH
T ss_pred cCCCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHcCCCCHHHHHH
Confidence 113445665665432 1111 1344677888888888888877655221111 123567889999999886 6655
Q ss_pred HHHh
Q 045677 214 LVSF 217 (352)
Q Consensus 214 ~~~~ 217 (352)
++..
T Consensus 232 l~~~ 235 (297)
T 3b9p_A 232 LAKD 235 (297)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 45
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.84 E-value=3.9e-08 Score=90.47 Aligned_cols=147 Identities=14% Similarity=0.106 Sum_probs=83.1
Q ss_pred CcCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCC------cceeEeeeccccccCCCcHHH
Q 045677 8 PKELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEF------DGSSFLADVRERCDKEGSVIS 81 (352)
Q Consensus 8 ~~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 81 (352)
-+++|||+.+++.+.+.+... ....++|+|++|+|||++|+.+++.+.... ...++..++.
T Consensus 179 ld~iiGr~~~i~~l~~~l~r~--~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~----------- 245 (468)
T 3pxg_A 179 LDPVIGRSKEIQRVIEVLSRR--TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG----------- 245 (468)
T ss_dssp SCCCCCCHHHHHHHHHHHHCS--SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--------------
T ss_pred CCCccCcHHHHHHHHHHHhcc--CCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC-----------
Confidence 357999999999999999853 335578999999999999999999874432 1122222111
Q ss_pred HHHHHHHHHhcccCCCccchhhhHHHHHhhhCCceEEEEEeCCCChhhhhhhhCCCCCCCCCceEEEEeCchhH------
Q 045677 82 LQKQLLSDLLMLADNSIRNVYDGVNMIGSRLRHKKVLLLIDDVADVEQLRGLFGKRDWFGLGSMIIITTRDEHL------ 155 (352)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~~~~~~l~~~~~~~~~~~~iiitsr~~~~------ 155 (352)
....+.. ... ....+.......+.+|++| ...+....+...+. ....++|.+|.....
T Consensus 246 ------~~~~g~~---e~~---~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~~ 309 (468)
T 3pxg_A 246 ------TKYRGEF---EDR---LKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEK 309 (468)
T ss_dssp ----------------CTT---HHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTT
T ss_pred ------ccccchH---HHH---HHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhhc
Confidence 0000000 011 1122222233567899999 22333333444443 234566665554431
Q ss_pred -hhhcCcccEEecCCCCHhHHHHHHHhhh
Q 045677 156 -LKLHRVEEVYKLEALNFDEAFRLFCLKA 183 (352)
Q Consensus 156 -~~~~~~~~~~~l~~l~~~e~~~ll~~~~ 183 (352)
....+....+.+++.+.++...++....
T Consensus 310 ~~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 310 DAALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp CSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred CHHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 1112234579999999999999998654
No 46
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.82 E-value=5e-07 Score=79.39 Aligned_cols=256 Identities=18% Similarity=0.152 Sum_probs=137.1
Q ss_pred cCcccccHHHHHHHHHHhcC---CCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHHH
Q 045677 9 KELVGMESRLEKLKFLMCTG---SNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQKQ 85 (352)
Q Consensus 9 ~~~vGR~~~l~~l~~~l~~~---~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 85 (352)
..++|.+..++.+...+... +.....++|+||+|+|||||++.++..+...+. ... +.. .....++ ..
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~----~~s-g~~---~~~~~~l-~~ 95 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIH----VTS-GPV---LVKQGDM-AA 95 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEE----EEE-TTT---CCSHHHH-HH
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE----EEe-chH---hcCHHHH-HH
Confidence 56899998888888777632 223466899999999999999999988753321 110 000 0000111 01
Q ss_pred HHHHHhcccCCCccchhhhHHHHHhhhCCceEEEEEeCCCCh--hhhhhhhCCCCCC------------------CCCce
Q 045677 86 LLSDLLMLADNSIRNVYDGVNMIGSRLRHKKVLLLIDDVADV--EQLRGLFGKRDWF------------------GLGSM 145 (352)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~------------------~~~~~ 145 (352)
+ + ..+ .++.++++|+++.. ...+.++..+... -....
T Consensus 96 ~---------------------~-~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~ 152 (334)
T 1in4_A 96 I---------------------L-TSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFT 152 (334)
T ss_dssp H---------------------H-HHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCE
T ss_pred H---------------------H-HHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeE
Confidence 0 0 011 23347788888532 1112111100000 01122
Q ss_pred EE-EEeCchhHhhhc--CcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchhHHHHHHhhcC--
Q 045677 146 II-ITTRDEHLLKLH--RVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLAVDVLVSFLFG-- 220 (352)
Q Consensus 146 ii-itsr~~~~~~~~--~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~~l~~-- 220 (352)
++ .|++...+.... +......+++.+.++..+++.+....... ...++.+..|++.+.|.|..+..+...+..
T Consensus 153 li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~--~~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~a 230 (334)
T 1in4_A 153 LVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDV--EIEDAAAEMIAKRSRGTPRIAIRLTKRVRDML 230 (334)
T ss_dssp EEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC--CBCHHHHHHHHHTSTTCHHHHHHHHHHHHHHH
T ss_pred EEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCC--CcCHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Confidence 33 344433332222 23346889999999999999876532111 133467889999999999876554433211
Q ss_pred ----C---ChhHHHHHHHHHccCCchhHHHHHHhhhccCcHhhhhhhhhhcc-C-CCCCCHHHHHHHHHhcCCCchhchH
Q 045677 221 ----R---PVDQWRSTQERLKRDPENKILGILQISFDGLKEAEKNIFLDVAC-F-YKWENRDYVSKILDSCGFDPIIGIS 291 (352)
Q Consensus 221 ----~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~l~~ls~-~-~~~~~~~~l~~~~~~~~~~~~~~l~ 291 (352)
. ..+.....++.+ ...-..++...+.++..+.- | .+++..+.++...+.+....++..+
T Consensus 231 ~~~~~~~It~~~v~~al~~~------------~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~t~~~~~~ 298 (334)
T 1in4_A 231 TVVKADRINTDIVLKTMEVL------------NIDDEGLDEFDRKILKTIIEIYRGGPVGLNALAASLGVEADTLSEVYE 298 (334)
T ss_dssp HHHTCSSBCHHHHHHHHHHH------------TCCTTCCCHHHHHHHHHHHHHSTTCCBCHHHHHHHHTSCHHHHHHHTH
T ss_pred HHcCCCCcCHHHHHHHHHHh------------CCCcCCCCHHHHHHHHHHHHHhCCCcchHHHHHHHhCCCcchHHHHHH
Confidence 1 111112222211 11123455555555554432 3 3446777777776544323334444
Q ss_pred -HHhhccceeecCCCceehh
Q 045677 292 -VLIEKSLLTVRENDRLWMH 310 (352)
Q Consensus 292 -~L~~~~li~~~~~~~~~~H 310 (352)
.|.+.|+|+....|+....
T Consensus 299 ~~l~~~g~i~~~~~gr~~~~ 318 (334)
T 1in4_A 299 PYLLQAGFLARTPRGRIVTE 318 (334)
T ss_dssp HHHHHTTSEEEETTEEEECH
T ss_pred HHHHHcCCeecccccHHhhH
Confidence 7999999999987775433
No 47
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.78 E-value=4.4e-07 Score=78.56 Aligned_cols=175 Identities=14% Similarity=0.148 Sum_probs=99.5
Q ss_pred cCcccccHHHHHHHHHHhc-----------CCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCC
Q 045677 9 KELVGMESRLEKLKFLMCT-----------GSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEG 77 (352)
Q Consensus 9 ~~~vGR~~~l~~l~~~l~~-----------~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (352)
..++|.+..++.|.+++.. +-...+.++|+|++|+|||+||+.++...... .+..+.
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~----~i~v~~-------- 82 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN----FISIKG-------- 82 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCE----EEEECH--------
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCC----EEEEEh--------
Confidence 5689999999888887652 12345679999999999999999999876432 112111
Q ss_pred cHHHHHHHHHHHHhcccCCCccchhhhHHHHHhhhCCceEEEEEeCCCChhh----------------hhhhhCCCCC--
Q 045677 78 SVISLQKQLLSDLLMLADNSIRNVYDGVNMIGSRLRHKKVLLLIDDVADVEQ----------------LRGLFGKRDW-- 139 (352)
Q Consensus 78 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~~~----------------~~~l~~~~~~-- 139 (352)
..+ ...+.+.. .......+.......+.+|+||+++.... ...++..+..
T Consensus 83 --~~l----~~~~~g~~------~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~ 150 (301)
T 3cf0_A 83 --PEL----LTMWFGES------EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS 150 (301)
T ss_dssp --HHH----HHHHHTTC------TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSC
T ss_pred --HHH----HhhhcCch------HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhccc
Confidence 111 12222111 11122233333345689999999964211 2223222211
Q ss_pred CCCCceEEEEeCchh-Hhhh----cCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchh
Q 045677 140 FGLGSMIIITTRDEH-LLKL----HRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLA 210 (352)
Q Consensus 140 ~~~~~~iiitsr~~~-~~~~----~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~ 210 (352)
...+..||.||.... +.+. .+....+.++..+.++..+++............ .....++..+.|+|-+
T Consensus 151 ~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~---~~~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 151 TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKD---VDLEFLAKMTNGFSGA 223 (301)
T ss_dssp TTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSS---CCHHHHHHTCSSCCHH
T ss_pred CCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCcc---chHHHHHHHcCCCCHH
Confidence 123455666665432 2111 134567899999999988888776532211111 1134566778887654
No 48
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.76 E-value=3.6e-08 Score=97.50 Aligned_cols=152 Identities=12% Similarity=0.088 Sum_probs=82.8
Q ss_pred CcCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCC------cceeEeeeccccccCCCcHHH
Q 045677 8 PKELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEF------DGSSFLADVRERCDKEGSVIS 81 (352)
Q Consensus 8 ~~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 81 (352)
-+++|||+.+++.+.+.+... ..+.++|+|++|+|||++|..++..+.... ...++..++......
T Consensus 169 ld~viGr~~~i~~l~~~l~~~--~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g------ 240 (854)
T 1qvr_A 169 LDPVIGRDEEIRRVIQILLRR--TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAG------ 240 (854)
T ss_dssp SCCCCSCHHHHHHHHHHHHCS--SCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC------------
T ss_pred CcccCCcHHHHHHHHHHHhcC--CCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhcc------
Confidence 356899999999999999843 345578999999999999999998863321 222333222111000
Q ss_pred HHHHHHHHHhcccCCCccchhhhHHHH-HhhhC-CceEEEEEeCCCChh---------h-hhhhhCCCCCCCCCceEEEE
Q 045677 82 LQKQLLSDLLMLADNSIRNVYDGVNMI-GSRLR-HKKVLLLIDDVADVE---------Q-LRGLFGKRDWFGLGSMIIIT 149 (352)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~-~~~~llvlDd~~~~~---------~-~~~l~~~~~~~~~~~~iiit 149 (352)
. ............+ ..... +.+.+|+||+++... + ...+...+. .....+|.+
T Consensus 241 ------------~-~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~--~~~i~~I~a 305 (854)
T 1qvr_A 241 ------------A-KYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA--RGELRLIGA 305 (854)
T ss_dssp ------------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHH--TTCCCEEEE
T ss_pred ------------C-ccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHh--CCCeEEEEe
Confidence 0 0000111112222 22222 468899999996532 1 111111111 234456655
Q ss_pred eCchhH------hhhcCcccEEecCCCCHhHHHHHHHhh
Q 045677 150 TRDEHL------LKLHRVEEVYKLEALNFDEAFRLFCLK 182 (352)
Q Consensus 150 sr~~~~------~~~~~~~~~~~l~~l~~~e~~~ll~~~ 182 (352)
|..... ....+....+.+++.+.++..+++...
T Consensus 306 t~~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 306 TTLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp ECHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHH
T ss_pred cCchHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhh
Confidence 554432 111233456899999999999988744
No 49
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.75 E-value=7e-07 Score=79.17 Aligned_cols=172 Identities=16% Similarity=0.206 Sum_probs=97.8
Q ss_pred cCcccccHHHHHHHHHHhc-----------CCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccC-C
Q 045677 9 KELVGMESRLEKLKFLMCT-----------GSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDK-E 76 (352)
Q Consensus 9 ~~~vGR~~~l~~l~~~l~~-----------~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 76 (352)
+...|-+...++|.+.+.- +-..++-++++||||+|||.||+.++......| +.......... .
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f----~~v~~s~l~sk~v 223 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKF----IRVSGAELVQKYI 223 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEE----EEEEGGGGSCSST
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCc----eEEEhHHhhcccc
Confidence 4467888888887765431 223456799999999999999999999876553 22222111111 1
Q ss_pred CcHHHHHHHHHHHHhcccCCCccchhhhHHHHHhhhCCceEEEEEeCCCChh----------------hhhhhhCCCCC-
Q 045677 77 GSVISLQKQLLSDLLMLADNSIRNVYDGVNMIGSRLRHKKVLLLIDDVADVE----------------QLRGLFGKRDW- 139 (352)
Q Consensus 77 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~~----------------~~~~l~~~~~~- 139 (352)
+.-...+ ...+...-...+++|+||+++... .+..++..+..
T Consensus 224 Gese~~v---------------------r~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~ 282 (405)
T 4b4t_J 224 GEGSRMV---------------------RELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGF 282 (405)
T ss_dssp THHHHHH---------------------HHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTT
T ss_pred chHHHHH---------------------HHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhcc
Confidence 1101111 122223334678999999995321 12233322221
Q ss_pred -CCCCceEEEEeCch-----hHhhhcCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCc
Q 045677 140 -FGLGSMIIITTRDE-----HLLKLHRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLP 208 (352)
Q Consensus 140 -~~~~~~iiitsr~~-----~~~~~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 208 (352)
...+..||.||... .+....++...+.++.-+.++-.++|+........... -.++.+++.|.|+-
T Consensus 283 ~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~d---vdl~~lA~~t~G~S 354 (405)
T 4b4t_J 283 ETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRG---INLRKVAEKMNGCS 354 (405)
T ss_dssp TCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSS---CCHHHHHHHCCSCC
T ss_pred CCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCcc---CCHHHHHHHCCCCC
Confidence 12344455555433 22223467788999988988888888766532221111 12567888888754
No 50
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.75 E-value=1.3e-08 Score=78.17 Aligned_cols=50 Identities=20% Similarity=0.255 Sum_probs=38.3
Q ss_pred cCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcC
Q 045677 9 KELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSH 58 (352)
Q Consensus 9 ~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~ 58 (352)
..++|+...++++.+.+..-......|+|+|++|+|||++|+.+++....
T Consensus 1 ~~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~ 50 (145)
T 3n70_A 1 VELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRN 50 (145)
T ss_dssp ---CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTT
T ss_pred CCceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCc
Confidence 36899999999999988652233356899999999999999999876533
No 51
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.75 E-value=8.9e-08 Score=83.23 Aligned_cols=51 Identities=20% Similarity=0.303 Sum_probs=40.4
Q ss_pred CcCcccccHHHHHHHHHHhc------------CCCCeEEEEEEcCCCCcHHHHHHHHHHHhcC
Q 045677 8 PKELVGMESRLEKLKFLMCT------------GSNDVRTIGIWGMGGLGKTTLARVVYDLMSH 58 (352)
Q Consensus 8 ~~~~vGR~~~l~~l~~~l~~------------~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~ 58 (352)
...++|++..++.+...+.. .....+.++|+|++|+|||++|+.+++.+..
T Consensus 14 ~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~ 76 (310)
T 1ofh_A 14 DQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA 76 (310)
T ss_dssp HTTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred hhhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 35689999999999887753 0123467889999999999999999988743
No 52
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.73 E-value=1e-07 Score=87.82 Aligned_cols=180 Identities=14% Similarity=0.118 Sum_probs=101.7
Q ss_pred cCcccccHHHHHHHHHHhcC-----------CCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCC
Q 045677 9 KELVGMESRLEKLKFLMCTG-----------SNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEG 77 (352)
Q Consensus 9 ~~~vGR~~~l~~l~~~l~~~-----------~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (352)
..++|.+..+++|.+++... ....+.++|+|++|+|||++|+.++...... ++..++.......
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~----fv~vn~~~l~~~~- 278 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF----FFLINGPEIMSKL- 278 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSE----EEEEEHHHHHTSC-
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCC----EEEEEchHhhhhh-
Confidence 35899999999998877631 2345679999999999999999998876332 2222221111110
Q ss_pred cHHHHHHHHHHHHhcccCCCccchhhhHHHHHhhhCCceEEEEEeCCCCh-------------hhhhhhhCCCC--CCCC
Q 045677 78 SVISLQKQLLSDLLMLADNSIRNVYDGVNMIGSRLRHKKVLLLIDDVADV-------------EQLRGLFGKRD--WFGL 142 (352)
Q Consensus 78 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~-------------~~~~~l~~~~~--~~~~ 142 (352)
. ..........+.....+.+.+|+||+++.. .....++..+. ....
T Consensus 279 -------------~------g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~ 339 (489)
T 3hu3_A 279 -------------A------GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRA 339 (489)
T ss_dssp -------------T------THHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTS
T ss_pred -------------c------chhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCC
Confidence 0 000111222333344567889999999311 11222322221 1123
Q ss_pred CceEEEEeCchh-Hhhh----cCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCC-chhHHHHH
Q 045677 143 GSMIIITTRDEH-LLKL----HRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGL-PLAVDVLV 215 (352)
Q Consensus 143 ~~~iiitsr~~~-~~~~----~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~-Pl~i~~~~ 215 (352)
+..||.||.... +.+. .++...+.++..+.++-.+++........... ...+..++..+.|+ +..|..++
T Consensus 340 ~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~---~~~l~~la~~t~g~s~~dL~~L~ 415 (489)
T 3hu3_A 340 HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLAD---DVDLEQVANETHGHVGADLAALC 415 (489)
T ss_dssp CEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCT---TCCHHHHHHTCTTCCHHHHHHHH
T ss_pred ceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcc---hhhHHHHHHHccCCcHHHHHHHH
Confidence 455555665432 2111 24556789999999999999987763222111 11245677777775 44455443
No 53
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.72 E-value=2.8e-07 Score=90.15 Aligned_cols=152 Identities=15% Similarity=0.159 Sum_probs=88.7
Q ss_pred cCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCC------cceeEeeeccccccCCCcHHHH
Q 045677 9 KELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEF------DGSSFLADVRERCDKEGSVISL 82 (352)
Q Consensus 9 ~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l 82 (352)
+.++||+.+++.+.+.+... ....++|+|++|+|||++|+.++..+.... ...++..+......
T Consensus 186 d~~iGr~~~i~~l~~~l~~~--~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~-------- 255 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRR--RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLA-------- 255 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---C--------
T ss_pred CCccCCHHHHHHHHHHHhcc--CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhc--------
Confidence 56899999999999999853 345678999999999999999998763221 12222221111100
Q ss_pred HHHHHHHHhcccCCCccchhhhHHHHHhhh-CCceEEEEEeCCCCh----------hhhhh-hhCCCCCCCCCceEEEEe
Q 045677 83 QKQLLSDLLMLADNSIRNVYDGVNMIGSRL-RHKKVLLLIDDVADV----------EQLRG-LFGKRDWFGLGSMIIITT 150 (352)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~llvlDd~~~~----------~~~~~-l~~~~~~~~~~~~iiits 150 (352)
. .............+...+ ...+.+|+||+++.. .+... +...+. .....+|.+|
T Consensus 256 ----------~-~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~--~~~~~~I~at 322 (758)
T 1r6b_X 256 ----------G-TKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGST 322 (758)
T ss_dssp ----------C-CCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS--SCCCEEEEEE
T ss_pred ----------c-ccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh--CCCeEEEEEe
Confidence 0 001112222222222222 345789999999644 12222 333333 2455666666
Q ss_pred CchhHhh-------hcCcccEEecCCCCHhHHHHHHHhhh
Q 045677 151 RDEHLLK-------LHRVEEVYKLEALNFDEAFRLFCLKA 183 (352)
Q Consensus 151 r~~~~~~-------~~~~~~~~~l~~l~~~e~~~ll~~~~ 183 (352)
....... ..+....+.+++.+.++..+++....
T Consensus 323 ~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 323 TYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp CHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred CchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 5443211 12233478999999999888887543
No 54
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.67 E-value=1.1e-06 Score=79.09 Aligned_cols=173 Identities=20% Similarity=0.241 Sum_probs=97.0
Q ss_pred cCcccccHHHHHHHHHHhc-----------CCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCC
Q 045677 9 KELVGMESRLEKLKFLMCT-----------GSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEG 77 (352)
Q Consensus 9 ~~~vGR~~~l~~l~~~l~~-----------~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (352)
+.+.|-+...++|.+.+.- +-..++-|+++||+|+|||.||+.++......| +............
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~----~~v~~s~l~sk~~ 256 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANF----IFSPASGIVDKYI 256 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEE----EEEEGGGTCCSSS
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCE----EEEehhhhccccc
Confidence 4567888888877665542 234467899999999999999999999876543 2222222211110
Q ss_pred cHHHHHHHHHHHHhcccCCCccchhhhHHHHHhhhCCceEEEEEeCCCChh----------------hhhhhhCCCCC--
Q 045677 78 SVISLQKQLLSDLLMLADNSIRNVYDGVNMIGSRLRHKKVLLLIDDVADVE----------------QLRGLFGKRDW-- 139 (352)
Q Consensus 78 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~~----------------~~~~l~~~~~~-- 139 (352)
. .........+...-...+++|+||+++... .+..++..+..
T Consensus 257 G--------------------ese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 316 (437)
T 4b4t_L 257 G--------------------ESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFD 316 (437)
T ss_dssp S--------------------HHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSS
T ss_pred h--------------------HHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhccc
Confidence 0 001111122233334679999999995321 12233332211
Q ss_pred CCCCceEEEEeCchh-H----hhhcCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCc
Q 045677 140 FGLGSMIIITTRDEH-L----LKLHRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLP 208 (352)
Q Consensus 140 ~~~~~~iiitsr~~~-~----~~~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 208 (352)
...+..||.||.... + ....++...+.++.-+.++-.++|+........... -.+..+++.|.|+-
T Consensus 317 ~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d---~dl~~lA~~t~G~s 387 (437)
T 4b4t_L 317 NLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGE---FDFEAAVKMSDGFN 387 (437)
T ss_dssp CTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSC---CCHHHHHHTCCSCC
T ss_pred CCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcc---cCHHHHHHhCCCCC
Confidence 123455666665332 2 112235667889888888888888765532221111 12567888888764
No 55
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.67 E-value=1.6e-06 Score=77.97 Aligned_cols=172 Identities=16% Similarity=0.197 Sum_probs=97.0
Q ss_pred cCcccccHHHHHHHHHHhc-----------CCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccC-C
Q 045677 9 KELVGMESRLEKLKFLMCT-----------GSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDK-E 76 (352)
Q Consensus 9 ~~~vGR~~~l~~l~~~l~~-----------~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 76 (352)
....|-+...++|.+.+.- +-..++-|+++||+|+|||.||+.++......| +.......... .
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~f----i~vs~s~L~sk~v 284 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATF----IRVIGSELVQKYV 284 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEE----EEEEGGGGCCCSS
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCe----EEEEhHHhhcccC
Confidence 3577888888888765421 234567899999999999999999999876543 22222211111 1
Q ss_pred CcHHHHHHHHHHHHhcccCCCccchhhhHHHHHhhhCCceEEEEEeCCCChh----------------hhhhhhCCCCC-
Q 045677 77 GSVISLQKQLLSDLLMLADNSIRNVYDGVNMIGSRLRHKKVLLLIDDVADVE----------------QLRGLFGKRDW- 139 (352)
Q Consensus 77 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~~----------------~~~~l~~~~~~- 139 (352)
+.-... ....+.......+++|+||+++... .+..++..+..
T Consensus 285 Gesek~---------------------ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~ 343 (467)
T 4b4t_H 285 GEGARM---------------------VRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGF 343 (467)
T ss_dssp SHHHHH---------------------HHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSS
T ss_pred CHHHHH---------------------HHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhcc
Confidence 110111 1122233334678999999995321 11222222211
Q ss_pred -CCCCceEEEEeCchh-----HhhhcCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCc
Q 045677 140 -FGLGSMIIITTRDEH-----LLKLHRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLP 208 (352)
Q Consensus 140 -~~~~~~iiitsr~~~-----~~~~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 208 (352)
...+..+|.||.... +....++...+.++.-+.++-.++|+........... -.++.+++.|.|+-
T Consensus 344 ~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~d---vdl~~LA~~T~GfS 415 (467)
T 4b4t_H 344 DPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERG---IRWELISRLCPNST 415 (467)
T ss_dssp CCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSS---CCHHHHHHHCCSCC
T ss_pred CCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCC---CCHHHHHHHCCCCC
Confidence 123444555554322 2222357788999888888888888766532211111 12566888888764
No 56
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=98.66 E-value=2.4e-07 Score=80.18 Aligned_cols=49 Identities=20% Similarity=0.258 Sum_probs=39.8
Q ss_pred cCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 9 KELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 9 ~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
..++|+...++++.+.+..-......|+|+|++|+|||++|+.+.....
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~ 50 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSA 50 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCc
Confidence 4689999999999988875323345688999999999999999988654
No 57
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.66 E-value=1.9e-07 Score=91.27 Aligned_cols=147 Identities=14% Similarity=0.092 Sum_probs=83.7
Q ss_pred CcCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCC------cceeEeeeccccccCCCcHHH
Q 045677 8 PKELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEF------DGSSFLADVRERCDKEGSVIS 81 (352)
Q Consensus 8 ~~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 81 (352)
-+.+|||+.+++.+...+... ...-++++|++|+|||++|+.+++.+.... ...++..+.
T Consensus 179 ld~iiG~~~~i~~l~~~l~~~--~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~------------ 244 (758)
T 3pxi_A 179 LDPVIGRSKEIQRVIEVLSRR--TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM------------ 244 (758)
T ss_dssp SCCCCCCHHHHHHHHHHHHCS--SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--------------
T ss_pred CCCccCchHHHHHHHHHHhCC--CCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc------------
Confidence 357999999999999999853 334588999999999999999998863321 112222111
Q ss_pred HHHHHHHHHhcccCCCccchhhhHHHHHhhhCCceEEEEEeCCCChhhhhhhhCCCCCCCCCceEEEEeCchhH------
Q 045677 82 LQKQLLSDLLMLADNSIRNVYDGVNMIGSRLRHKKVLLLIDDVADVEQLRGLFGKRDWFGLGSMIIITTRDEHL------ 155 (352)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~~~~~~l~~~~~~~~~~~~iiitsr~~~~------ 155 (352)
.....+ ... ..+...+.......+.+|+|| ...+....+...+. ....++|.+|.....
T Consensus 245 -----g~~~~G---~~e---~~l~~~~~~~~~~~~~iLfiD--~~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~ 309 (758)
T 3pxi_A 245 -----GTKYRG---EFE---DRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEK 309 (758)
T ss_dssp ----------------C---TTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTT
T ss_pred -----cccccc---hHH---HHHHHHHHHHHhcCCEEEEEc--CchhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhc
Confidence 000000 000 111222233334677899999 22233333444443 335566666654431
Q ss_pred h-hhcCcccEEecCCCCHhHHHHHHHhhh
Q 045677 156 L-KLHRVEEVYKLEALNFDEAFRLFCLKA 183 (352)
Q Consensus 156 ~-~~~~~~~~~~l~~l~~~e~~~ll~~~~ 183 (352)
. ...+....+.+++.+.++..+++....
T Consensus 310 d~al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 310 DAALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp CSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred cHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 1 111233679999999999999998554
No 58
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.64 E-value=7.5e-07 Score=75.20 Aligned_cols=183 Identities=14% Similarity=0.093 Sum_probs=96.5
Q ss_pred CCcCcccccHHHHHHHHHHhc---C-------CCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCC
Q 045677 7 IPKELVGMESRLEKLKFLMCT---G-------SNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKE 76 (352)
Q Consensus 7 ~~~~~vGR~~~l~~l~~~l~~---~-------~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (352)
.-..++|.+...+++.+.+.. . ....+-++|+|++|+|||+||+.++......+ +.+ +........
T Consensus 10 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~---~~i-~~~~~~~~~ 85 (257)
T 1lv7_A 10 TFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPF---FTI-SGSDFVEMF 85 (257)
T ss_dssp CGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCE---EEE-CSCSSTTSC
T ss_pred CHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCE---EEE-eHHHHHHHh
Confidence 346789999888877665431 0 11234588999999999999999998764332 222 111111000
Q ss_pred CcHHHHHHHHHHHHhcccCCCccchhhhHHHHHhhhCCceEEEEEeCCCCh----------------hhhhhhhCCCCC-
Q 045677 77 GSVISLQKQLLSDLLMLADNSIRNVYDGVNMIGSRLRHKKVLLLIDDVADV----------------EQLRGLFGKRDW- 139 (352)
Q Consensus 77 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~----------------~~~~~l~~~~~~- 139 (352)
. ..........+.......+.++++|+++.. ..+..++..+..
T Consensus 86 ------------------~--~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~ 145 (257)
T 1lv7_A 86 ------------------V--GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGF 145 (257)
T ss_dssp ------------------C--CCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTC
T ss_pred ------------------h--hhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCc
Confidence 0 001111222233333456789999998321 112222222111
Q ss_pred -CCCCceEEEEeCchh-Hhhh----cCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCC-CchhHH
Q 045677 140 -FGLGSMIIITTRDEH-LLKL----HRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASG-LPLAVD 212 (352)
Q Consensus 140 -~~~~~~iiitsr~~~-~~~~----~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G-~Pl~i~ 212 (352)
...+..+|.||.... +.+. .++...+.++..+.++-.+++............ .....++..+.| ++.-|.
T Consensus 146 ~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~---~~~~~la~~~~G~~~~dl~ 222 (257)
T 1lv7_A 146 EGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPD---IDAAIIARGTPGFSGADLA 222 (257)
T ss_dssp CSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTT---CCHHHHHHTCTTCCHHHHH
T ss_pred ccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCcc---ccHHHHHHHcCCCCHHHHH
Confidence 123445666665432 2111 134457888888888888887765522211111 123456677777 776665
Q ss_pred HHHH
Q 045677 213 VLVS 216 (352)
Q Consensus 213 ~~~~ 216 (352)
.++.
T Consensus 223 ~l~~ 226 (257)
T 1lv7_A 223 NLVN 226 (257)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5433
No 59
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.61 E-value=3.5e-07 Score=78.99 Aligned_cols=146 Identities=14% Similarity=0.044 Sum_probs=88.4
Q ss_pred cccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhc---CCCcceeEeeeccccccCCCcHHHHHHHHHHH
Q 045677 13 GMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMS---HEFDGSSFLADVRERCDKEGSVISLQKQLLSD 89 (352)
Q Consensus 13 GR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 89 (352)
|-+..++.|...+..+. .+..+++||+|+|||++|..+++... ........+. . ...... .+..+.+...
T Consensus 1 g~~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~-~---~~~~~~-id~ir~li~~ 73 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEID-P---EGENIG-IDDIRTIKDF 73 (305)
T ss_dssp ---CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEEC-C---SSSCBC-HHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEc-C---CcCCCC-HHHHHHHHHH
Confidence 44566788888888543 68899999999999999999987521 1112222221 1 100111 2222333333
Q ss_pred HhcccCCCccchhhhHHHHHhhhCCceEEEEEeCCCC--hhhhhhhhCCCCCCCCCceEEEEeCch-hHhhhcCcccEEe
Q 045677 90 LLMLADNSIRNVYDGVNMIGSRLRHKKVLLLIDDVAD--VEQLRGLFGKRDWFGLGSMIIITTRDE-HLLKLHRVEEVYK 166 (352)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~--~~~~~~l~~~~~~~~~~~~iiitsr~~-~~~~~~~~~~~~~ 166 (352)
+...+. .+++-++|||+++. ....+.++..+...+..+.+|++|.+. .+.+..... .++
T Consensus 74 ~~~~p~-----------------~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~ 135 (305)
T 2gno_A 74 LNYSPE-----------------LYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFR 135 (305)
T ss_dssp HTSCCS-----------------SSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEE
T ss_pred Hhhccc-----------------cCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEe
Confidence 221111 23466999999964 345566666665556677777766433 344444444 999
Q ss_pred cCCCCHhHHHHHHHhhh
Q 045677 167 LEALNFDEAFRLFCLKA 183 (352)
Q Consensus 167 l~~l~~~e~~~ll~~~~ 183 (352)
+++++.++..+++.+..
T Consensus 136 f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 136 VVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp EECCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 99999999999998876
No 60
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.61 E-value=1.1e-06 Score=80.39 Aligned_cols=179 Identities=18% Similarity=0.212 Sum_probs=99.2
Q ss_pred cCcccccHHHHHHHHHHhc----------CCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCc
Q 045677 9 KELVGMESRLEKLKFLMCT----------GSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGS 78 (352)
Q Consensus 9 ~~~vGR~~~l~~l~~~l~~----------~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (352)
..++|.+..++++.+.+.. +...++-++|+||+|+|||+||+.++......| +..+..........
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f----~~is~~~~~~~~~g 91 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPF----FHISGSDFVELFVG 91 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCE----EEEEGGGTTTCCTT
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCe----eeCCHHHHHHHHhc
Confidence 4689999888777765432 011234588999999999999999998765332 22222111111000
Q ss_pred HHHHHHHHHHHHhcccCCCccchhhhHHHHHhhhCCceEEEEEeCCCCh----------------hhhhhhhCCCCC--C
Q 045677 79 VISLQKQLLSDLLMLADNSIRNVYDGVNMIGSRLRHKKVLLLIDDVADV----------------EQLRGLFGKRDW--F 140 (352)
Q Consensus 79 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~----------------~~~~~l~~~~~~--~ 140 (352)
.........+.......+.+|+||+++.. ..+..++..+.. .
T Consensus 92 --------------------~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~ 151 (476)
T 2ce7_A 92 --------------------VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDS 151 (476)
T ss_dssp --------------------HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCG
T ss_pred --------------------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCC
Confidence 00111222334444567899999999532 112333322211 1
Q ss_pred CCCceEEEEeCchhHhh-h----cCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCc-hhHHHH
Q 045677 141 GLGSMIIITTRDEHLLK-L----HRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLP-LAVDVL 214 (352)
Q Consensus 141 ~~~~~iiitsr~~~~~~-~----~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~P-l~i~~~ 214 (352)
..+..||.||....... . .++...+.++..+.++-.+++............ .....++..+.|+. .-|..+
T Consensus 152 ~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~---v~l~~la~~t~G~sgadL~~l 228 (476)
T 2ce7_A 152 KEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAED---VNLEIIAKRTPGFVGADLENL 228 (476)
T ss_dssp GGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTT---CCHHHHHHTCTTCCHHHHHHH
T ss_pred CCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcch---hhHHHHHHhcCCCcHHHHHHH
Confidence 23455666665443211 1 245558889988888888888765532221111 11456888899988 345443
No 61
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.61 E-value=1.1e-06 Score=78.93 Aligned_cols=172 Identities=18% Similarity=0.218 Sum_probs=91.7
Q ss_pred cCcccccHHHHHHHHHHhc-----------CCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccC-C
Q 045677 9 KELVGMESRLEKLKFLMCT-----------GSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDK-E 76 (352)
Q Consensus 9 ~~~vGR~~~l~~l~~~l~~-----------~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 76 (352)
.+..|-+...+.|.+.+.- +-..++-++++||+|+|||.||+.++......| +.......... .
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~----~~v~~~~l~~~~~ 247 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAF----IRVNGSEFVHKYL 247 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEE----EEEEGGGTCCSSC
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe----EEEecchhhcccc
Confidence 4567888888887765541 234457799999999999999999999876543 22222221111 1
Q ss_pred CcHHHHHHHHHHHHhcccCCCccchhhhHHHHHhhhCCceEEEEEeCCCChh----------------hhhhhhCCCCC-
Q 045677 77 GSVISLQKQLLSDLLMLADNSIRNVYDGVNMIGSRLRHKKVLLLIDDVADVE----------------QLRGLFGKRDW- 139 (352)
Q Consensus 77 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~~----------------~~~~l~~~~~~- 139 (352)
+.-...+ ...+.......+++++||+++... .+..++..+..
T Consensus 248 Ge~e~~i---------------------r~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~ 306 (428)
T 4b4t_K 248 GEGPRMV---------------------RDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGF 306 (428)
T ss_dssp SHHHHHH---------------------HHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHS
T ss_pred chhHHHH---------------------HHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCC
Confidence 1101111 122223334678999999994210 12233322211
Q ss_pred -CCCCceEEEEeCchh-----HhhhcCcccEEecCCCCHh-HHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCc
Q 045677 140 -FGLGSMIIITTRDEH-----LLKLHRVEEVYKLEALNFD-EAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLP 208 (352)
Q Consensus 140 -~~~~~~iiitsr~~~-----~~~~~~~~~~~~l~~l~~~-e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 208 (352)
...+..||.||.... +....++...+.++.++.. +-..++............ -.++.+++.|.|+-
T Consensus 307 ~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~---~dl~~lA~~t~G~s 379 (428)
T 4b4t_K 307 DQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPE---ADLDSLIIRNDSLS 379 (428)
T ss_dssp CSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTT---CCHHHHHHHTTTCC
T ss_pred CCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcc---cCHHHHHHHCCCCC
Confidence 123445665665332 2222355567888767544 445555444322111111 12567788887753
No 62
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.60 E-value=4.8e-07 Score=78.69 Aligned_cols=52 Identities=19% Similarity=0.302 Sum_probs=41.2
Q ss_pred CcCcccccHHHHHHHHHHhcC-------CCCeEEEEEEcCCCCcHHHHHHHHHHHhcCC
Q 045677 8 PKELVGMESRLEKLKFLMCTG-------SNDVRTIGIWGMGGLGKTTLARVVYDLMSHE 59 (352)
Q Consensus 8 ~~~~vGR~~~l~~l~~~l~~~-------~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~ 59 (352)
...++|.+..++.+...+... ......++|+|++|+|||++|+.++..+...
T Consensus 16 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~ 74 (311)
T 4fcw_A 16 HKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT 74 (311)
T ss_dssp HTTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSC
T ss_pred hhhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCC
Confidence 356899999999998877742 1123578999999999999999999887544
No 63
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=98.59 E-value=7e-08 Score=82.15 Aligned_cols=176 Identities=16% Similarity=0.198 Sum_probs=93.4
Q ss_pred CCcCcccccHHHHHHHHHHhc----------CCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCC
Q 045677 7 IPKELVGMESRLEKLKFLMCT----------GSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKE 76 (352)
Q Consensus 7 ~~~~~vGR~~~l~~l~~~l~~----------~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (352)
.-..++|.+..++.+.+.+.. .....+.++|+|++|+|||+||+.++......+- ..+.......
T Consensus 9 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~----~v~~~~~~~~- 83 (268)
T 2r62_A 9 RFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFF----SMGGSSFIEM- 83 (268)
T ss_dssp CSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCC----CCCSCTTTTS-
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEE----EechHHHHHh-
Confidence 346799999999888876651 1122344889999999999999999988654321 1111111000
Q ss_pred CcHHHHHHHHHHHHhcccCCCccchhhhHHHHHhhhCCceEEEEEeCCCChh-----------------hhhhhhCCCCC
Q 045677 77 GSVISLQKQLLSDLLMLADNSIRNVYDGVNMIGSRLRHKKVLLLIDDVADVE-----------------QLRGLFGKRDW 139 (352)
Q Consensus 77 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~~-----------------~~~~l~~~~~~ 139 (352)
+.... ....... +.......+.+|+||+++... .+..++..+..
T Consensus 84 -------------~~~~~---~~~~~~~---~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~ 144 (268)
T 2r62_A 84 -------------FVGLG---ASRVRDL---FETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDG 144 (268)
T ss_dssp -------------CSSSC---SSSSSTT---HHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTC
T ss_pred -------------hcchH---HHHHHHH---HHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhC
Confidence 00000 1111111 222223456799999995431 12333333322
Q ss_pred C---CCCceEEEEeCchhH-----hhhcCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCch
Q 045677 140 F---GLGSMIIITTRDEHL-----LKLHRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPL 209 (352)
Q Consensus 140 ~---~~~~~iiitsr~~~~-----~~~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl 209 (352)
. .....+|.||..... ....++...+.++..+.++..+++............ .....+++.+.|+|-
T Consensus 145 ~~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~---~~~~~la~~~~g~~g 219 (268)
T 2r62_A 145 FGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLAND---VNLQEVAKLTAGLAG 219 (268)
T ss_dssp SSCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSS---CCTTTTTSSSCSSCH
T ss_pred cccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCc---cCHHHHHHHcCCCCH
Confidence 1 122445556654321 111234456888899999988888766532211110 113345556666654
No 64
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.56 E-value=3.7e-06 Score=77.13 Aligned_cols=95 Identities=13% Similarity=0.030 Sum_probs=58.3
Q ss_pred EEEEEeCCC--ChhhhhhhhCCCCCCCCCceEEEEe---------Cc-----hhHh-hhcCcccEEecCCCCHhHHHHHH
Q 045677 117 VLLLIDDVA--DVEQLRGLFGKRDWFGLGSMIIITT---------RD-----EHLL-KLHRVEEVYKLEALNFDEAFRLF 179 (352)
Q Consensus 117 ~llvlDd~~--~~~~~~~l~~~~~~~~~~~~iiits---------r~-----~~~~-~~~~~~~~~~l~~l~~~e~~~ll 179 (352)
-+++||+++ +.+....++..+...... .+|+.+ .+ ..+. ........+.+++++.++..+++
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL 375 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQII 375 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHH
Confidence 499999996 445677777666654445 344343 11 1111 12234456799999999999999
Q ss_pred HhhhcCCCCCchhHHHHHHHHHHHc-CCCchhHHHH
Q 045677 180 CLKAFDTYKPLEEYLELAKCFVKYA-SGLPLAVDVL 214 (352)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~i~~~~-~G~Pl~i~~~ 214 (352)
..++..... ...++.+..++..+ +|.|.....+
T Consensus 376 ~~~~~~~~~--~~~~~~~~~i~~~a~~g~~r~a~~l 409 (456)
T 2c9o_A 376 KIRAQTEGI--NISEEALNHLGEIGTKTTLRYSVQL 409 (456)
T ss_dssp HHHHHHHTC--CBCHHHHHHHHHHHHHSCHHHHHHT
T ss_pred HHHHHHhCC--CCCHHHHHHHHHHccCCCHHHHHHH
Confidence 876521111 12235677788888 7888755443
No 65
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.55 E-value=1.9e-06 Score=77.56 Aligned_cols=172 Identities=15% Similarity=0.186 Sum_probs=95.0
Q ss_pred cCcccccHHHHHHHHHHhc-----------CCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccC-C
Q 045677 9 KELVGMESRLEKLKFLMCT-----------GSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDK-E 76 (352)
Q Consensus 9 ~~~vGR~~~l~~l~~~l~~-----------~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 76 (352)
..+.|-+...++|.+.+.. +-..++-|++|||||+|||.||+.++......| +.......... .
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f----~~v~~s~l~~~~v 256 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATF----LKLAAPQLVQMYI 256 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEE----EEEEGGGGCSSCS
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCE----EEEehhhhhhccc
Confidence 4578888888888765321 223467899999999999999999998876543 22222222111 1
Q ss_pred CcHHHHHHHHHHHHhcccCCCccchhhhHHHHHhhhCCceEEEEEeCCCCh-------h---------hhhhhhCCCCCC
Q 045677 77 GSVISLQKQLLSDLLMLADNSIRNVYDGVNMIGSRLRHKKVLLLIDDVADV-------E---------QLRGLFGKRDWF 140 (352)
Q Consensus 77 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~-------~---------~~~~l~~~~~~~ 140 (352)
+.-...++ ..+.......+++|+||+++.. . .+..++..+...
T Consensus 257 Gese~~ir---------------------~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~ 315 (434)
T 4b4t_M 257 GEGAKLVR---------------------DAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGF 315 (434)
T ss_dssp SHHHHHHH---------------------HHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTS
T ss_pred chHHHHHH---------------------HHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhcc
Confidence 11011111 1122222457899999999421 0 122333333211
Q ss_pred --CCCceEEEEeCchh-Hhh----hcCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCc
Q 045677 141 --GLGSMIIITTRDEH-LLK----LHRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLP 208 (352)
Q Consensus 141 --~~~~~iiitsr~~~-~~~----~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 208 (352)
..+..||.||.... +.+ ..++...+.++.-+.++..++|+........... -.++.+++.|.|+-
T Consensus 316 ~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d---vdl~~lA~~t~G~s 387 (434)
T 4b4t_M 316 SSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDD---INWQELARSTDEFN 387 (434)
T ss_dssp CSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSC---CCHHHHHHHCSSCC
T ss_pred CCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCc---CCHHHHHHhCCCCC
Confidence 23444555554332 212 2356678899888888888888755422111110 11566788887753
No 66
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.55 E-value=2.6e-06 Score=75.85 Aligned_cols=172 Identities=17% Similarity=0.211 Sum_probs=94.2
Q ss_pred cCcccccHHHHHHHHHHhc-----------CCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccC-C
Q 045677 9 KELVGMESRLEKLKFLMCT-----------GSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDK-E 76 (352)
Q Consensus 9 ~~~vGR~~~l~~l~~~l~~-----------~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 76 (352)
..+.|-+...++|.+.+.- +-..++-|+++||+|+|||.||+.++......| +.......... .
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~f----i~v~~s~l~sk~v 257 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATF----LRIVGSELIQKYL 257 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEE----EEEESGGGCCSSS
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCE----EEEEHHHhhhccC
Confidence 4466788877777665431 223457799999999999999999999876553 22222111111 1
Q ss_pred CcHHHHHHHHHHHHhcccCCCccchhhhHHHHHhhhCCceEEEEEeCCCChh----------------hhhhhhCCCC--
Q 045677 77 GSVISLQKQLLSDLLMLADNSIRNVYDGVNMIGSRLRHKKVLLLIDDVADVE----------------QLRGLFGKRD-- 138 (352)
Q Consensus 77 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~~----------------~~~~l~~~~~-- 138 (352)
+.-...++ ..+...-...+++|+||+++... .+..++..+.
T Consensus 258 Gesek~ir---------------------~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~ 316 (437)
T 4b4t_I 258 GDGPRLCR---------------------QIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGF 316 (437)
T ss_dssp SHHHHHHH---------------------HHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHC
T ss_pred chHHHHHH---------------------HHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCc
Confidence 11011111 12222334678999999985310 1222222221
Q ss_pred CCCCCceEEEEeCchh-Hhhh----cCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCc
Q 045677 139 WFGLGSMIIITTRDEH-LLKL----HRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLP 208 (352)
Q Consensus 139 ~~~~~~~iiitsr~~~-~~~~----~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 208 (352)
....+..||.||.... +.+. .++...+.++.-+.++-.++|+........... -.++.+++.|.|+-
T Consensus 317 ~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~d---vdl~~LA~~T~GfS 388 (437)
T 4b4t_I 317 DDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSED---VNLETLVTTKDDLS 388 (437)
T ss_dssp CCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSC---CCHHHHHHHCCSCC
T ss_pred CCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCc---CCHHHHHHhCCCCC
Confidence 1123445555554332 2222 245567888888888888888766532211110 12567788887753
No 67
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=98.55 E-value=4.1e-07 Score=77.22 Aligned_cols=50 Identities=20% Similarity=0.159 Sum_probs=36.9
Q ss_pred cCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcC
Q 045677 9 KELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSH 58 (352)
Q Consensus 9 ~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~ 58 (352)
+.++|++..++.+.+.+.........++|+|++|+|||++|+.+++....
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~ 55 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSR 55 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTT
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCc
Confidence 45899999999988776642223367889999999999999999987643
No 68
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.51 E-value=2.4e-07 Score=73.74 Aligned_cols=49 Identities=16% Similarity=0.214 Sum_probs=34.1
Q ss_pred cCccc----ccHHHHHHHHHHhcC-CCCeEEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 9 KELVG----MESRLEKLKFLMCTG-SNDVRTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 9 ~~~vG----R~~~l~~l~~~l~~~-~~~~~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
++|++ +...++.+.+++.+- ......+.|+|++|+|||||++.++..+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 10 DTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp SSCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred ccccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34554 344445555555531 12347899999999999999999998875
No 69
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.42 E-value=4.1e-08 Score=75.05 Aligned_cols=50 Identities=12% Similarity=0.099 Sum_probs=35.3
Q ss_pred CcCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 8 PKELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 8 ~~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
...++|++..++++.+.+..-......|+|+|++|+|||++|+.++....
T Consensus 3 ~~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 3 AFDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp -----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred CcCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 34689999999999888764212234588999999999999998876543
No 70
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.39 E-value=2.8e-07 Score=70.78 Aligned_cols=51 Identities=20% Similarity=0.219 Sum_probs=34.3
Q ss_pred CCCCCcCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCC
Q 045677 4 ELEIPKELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHE 59 (352)
Q Consensus 4 ~~~~~~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~ 59 (352)
.....+.++|.+.+.- ..+..- ....+.|+|++|+|||+|++.++......
T Consensus 13 ~~~~~~f~~g~n~~~~---~~l~~~--~g~~~~l~G~~G~GKTtL~~~i~~~~~~~ 63 (149)
T 2kjq_A 13 YPSFDKFLGTENAELV---YVLRHK--HGQFIYVWGEEGAGKSHLLQAWVAQALEA 63 (149)
T ss_dssp CCCCCCCCSCCTHHHH---HHCCCC--CCSEEEEESSSTTTTCHHHHHHHHHHHTT
T ss_pred ccchhhcCcCccHHHH---HHHHhc--CCCEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 3344455566654443 333322 34678899999999999999999887543
No 71
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=98.37 E-value=4.2e-06 Score=71.96 Aligned_cols=29 Identities=31% Similarity=0.539 Sum_probs=25.1
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcCC
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMSHE 59 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~~~ 59 (352)
.++.++++||+|+|||+||+.+++.+...
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~~~ 63 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMGIN 63 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHTCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 35678999999999999999999988544
No 72
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.36 E-value=1.4e-06 Score=70.61 Aligned_cols=58 Identities=12% Similarity=0.125 Sum_probs=39.3
Q ss_pred cCcccccH----HHHHHHHHHhcCCCC--eEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEe
Q 045677 9 KELVGMES----RLEKLKFLMCTGSND--VRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFL 66 (352)
Q Consensus 9 ~~~vGR~~----~l~~l~~~l~~~~~~--~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~ 66 (352)
++|++... .++.+.+++...... .+.++|+|++|+|||+||..++..........+++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~ 88 (202)
T 2w58_A 25 SDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIV 88 (202)
T ss_dssp TSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred hhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 45776553 344555666543221 26789999999999999999999876554444444
No 73
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.36 E-value=2.2e-06 Score=83.83 Aligned_cols=150 Identities=15% Similarity=0.212 Sum_probs=84.2
Q ss_pred cCcccccHHHHHHHHHHhcCC-------CCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHH
Q 045677 9 KELVGMESRLEKLKFLMCTGS-------NDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVIS 81 (352)
Q Consensus 9 ~~~vGR~~~l~~l~~~l~~~~-------~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (352)
..++|.+..++.+...+.... .....++++|++|+|||++|+.+++.+.......+.+ ++......... .
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i-~~s~~~~~~~~-~- 567 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRI-DMSEYMEKHST-S- 567 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEE-EGGGGCSSCCC-C-
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEE-echhccccccc-c-
Confidence 468999999988888777411 1123699999999999999999998874432223333 33333322211 0
Q ss_pred HHHHHHHHHhcccCCCccchhhhHHHHHhhhCCceEEEEEeCCCCh--hhhhhhhCCCCC-----------CCCCceEEE
Q 045677 82 LQKQLLSDLLMLADNSIRNVYDGVNMIGSRLRHKKVLLLIDDVADV--EQLRGLFGKRDW-----------FGLGSMIII 148 (352)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~--~~~~~l~~~~~~-----------~~~~~~iii 148 (352)
...+...+. .....+|+||+++.. +....++..+.. ...++.||+
T Consensus 568 -------------------~~~l~~~~~---~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ 625 (758)
T 3pxi_A 568 -------------------GGQLTEKVR---RKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIM 625 (758)
T ss_dssp ----------------------CHHHHH---HCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEE
T ss_pred -------------------cchhhHHHH---hCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEE
Confidence 001111111 123349999999632 223333222211 123567888
Q ss_pred EeCch-----h--------H-hhh-cCcccEEecCCCCHhHHHHHHHhhh
Q 045677 149 TTRDE-----H--------L-LKL-HRVEEVYKLEALNFDEAFRLFCLKA 183 (352)
Q Consensus 149 tsr~~-----~--------~-~~~-~~~~~~~~l~~l~~~e~~~ll~~~~ 183 (352)
||... . . ... .+....+.+++++.++...++....
T Consensus 626 ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 626 TSNVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp EESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHH
T ss_pred eCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHH
Confidence 88621 0 0 001 2334689999999999888876654
No 74
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=98.28 E-value=4.1e-06 Score=80.99 Aligned_cols=175 Identities=15% Similarity=0.134 Sum_probs=97.9
Q ss_pred cCcccccHHHHHHHHHHhc-----------CCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCC
Q 045677 9 KELVGMESRLEKLKFLMCT-----------GSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEG 77 (352)
Q Consensus 9 ~~~vGR~~~l~~l~~~l~~-----------~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (352)
..+.|-+..+++|.+.+.- +-..++-|+++||+|+|||+||+.++.....+ ++..+........
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~----~~~v~~~~l~sk~- 278 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF----FFLINGPEIMSKL- 278 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCE----EEEEEHHHHHSSC-
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCe----EEEEEhHHhhccc-
Confidence 3467888888888775431 12345779999999999999999999876543 2332221111100
Q ss_pred cHHHHHHHHHHHHhcccCCCccchhhhHHHHHhhhCCceEEEEEeCCCChh-------------hhhhhhCCCCCC--CC
Q 045677 78 SVISLQKQLLSDLLMLADNSIRNVYDGVNMIGSRLRHKKVLLLIDDVADVE-------------QLRGLFGKRDWF--GL 142 (352)
Q Consensus 78 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~~-------------~~~~l~~~~~~~--~~ 142 (352)
.......+...+.......+.+|+||+++... .+..++..+... ..
T Consensus 279 -------------------~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~ 339 (806)
T 3cf2_A 279 -------------------AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRA 339 (806)
T ss_dssp -------------------TTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGG
T ss_pred -------------------chHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccC
Confidence 01111222233444446789999999995321 122333222111 12
Q ss_pred CceEEEEeCch-hHhhh----cCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCchh
Q 045677 143 GSMIIITTRDE-HLLKL----HRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLPLA 210 (352)
Q Consensus 143 ~~~iiitsr~~-~~~~~----~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~ 210 (352)
+..||.+|... .+.+. .++...+.++.-+.++-.++++.......... .-.+..++..|.|+.-+
T Consensus 340 ~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~---dvdl~~lA~~T~Gfsga 409 (806)
T 3cf2_A 340 HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLAD---DVDLEQVANETHGHVGA 409 (806)
T ss_dssp CEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECT---TCCHHHHHHHCCSCCHH
T ss_pred CEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCc---ccCHHHHHHhcCCCCHH
Confidence 33444444432 22222 24667899999899888888876652221111 12256788888887543
No 75
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.26 E-value=4.2e-05 Score=64.24 Aligned_cols=174 Identities=18% Similarity=0.155 Sum_probs=87.6
Q ss_pred CcCcccccHHHHHHHHHHhc--C--------CCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCC
Q 045677 8 PKELVGMESRLEKLKFLMCT--G--------SNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEG 77 (352)
Q Consensus 8 ~~~~vGR~~~l~~l~~~l~~--~--------~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (352)
-+.++|.+....++.+.... . -.-.+-++|+|++|+|||||++.++...... .+.+. ........
T Consensus 15 ~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~---~i~~~-~~~~~~~~- 89 (254)
T 1ixz_A 15 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVP---FITAS-GSDFVEMF- 89 (254)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCC---EEEEE-HHHHHHSC-
T ss_pred HHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCC---EEEee-HHHHHHHH-
Confidence 35689988777666554331 0 0112238999999999999999999876522 22221 11100000
Q ss_pred cHHHHHHHHHHHHhcccCCCccchhhhHHHHHhhhCCceEEEEEeCCCChh----------------hhhhhhCCCCCC-
Q 045677 78 SVISLQKQLLSDLLMLADNSIRNVYDGVNMIGSRLRHKKVLLLIDDVADVE----------------QLRGLFGKRDWF- 140 (352)
Q Consensus 78 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~~----------------~~~~l~~~~~~~- 140 (352)
. ..........+.......+.++++|+++... .+..++..+...
T Consensus 90 -------------~------~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~ 150 (254)
T 1ixz_A 90 -------------V------GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE 150 (254)
T ss_dssp -------------T------THHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCC
T ss_pred -------------h------hHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCC
Confidence 0 0000111112222223457899999984211 122222222111
Q ss_pred CCC-ceEEEEeCchhHhh-----hcCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCc
Q 045677 141 GLG-SMIIITTRDEHLLK-----LHRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLP 208 (352)
Q Consensus 141 ~~~-~~iiitsr~~~~~~-----~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 208 (352)
... ..++.++....... ..++...+.++..+.++-.++++.......... ......++..+.|+-
T Consensus 151 ~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~---~~~~~~la~~~~G~~ 221 (254)
T 1ixz_A 151 KDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAE---DVDLALLAKRTPGFV 221 (254)
T ss_dssp TTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCT---TCCHHHHHHTCTTCC
T ss_pred CCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCc---ccCHHHHHHHcCCCC
Confidence 122 23444454433221 124556789999999888888876552221111 112445777777765
No 76
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.25 E-value=1.7e-05 Score=72.96 Aligned_cols=180 Identities=19% Similarity=0.192 Sum_probs=94.9
Q ss_pred CCcCcccccHHHHHHHHHHhc---C-------CCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCC
Q 045677 7 IPKELVGMESRLEKLKFLMCT---G-------SNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKE 76 (352)
Q Consensus 7 ~~~~~vGR~~~l~~l~~~l~~---~-------~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (352)
.-..++|.+....++.+.... . ..-.+-++|+|++|+|||+||+.++...... ++..+........
T Consensus 29 ~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~----~i~i~g~~~~~~~ 104 (499)
T 2dhr_A 29 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVP----FITASGSDFVEMF 104 (499)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCC----EEEEEGGGGTSSC
T ss_pred CHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC----EEEEehhHHHHhh
Confidence 346689999887777665432 1 0112348999999999999999999876522 2222222211110
Q ss_pred CcHHHHHHHHHHHHhcccCCCccchhhhHHHHHhhh-CCceEEEEEeCCCCh----------------hhhhhhhCCCCC
Q 045677 77 GSVISLQKQLLSDLLMLADNSIRNVYDGVNMIGSRL-RHKKVLLLIDDVADV----------------EQLRGLFGKRDW 139 (352)
Q Consensus 77 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~llvlDd~~~~----------------~~~~~l~~~~~~ 139 (352)
. ... ......+.+.. ...+.++++|+++.. ..+..++..+..
T Consensus 105 ~---g~~------------------~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg 163 (499)
T 2dhr_A 105 V---GVG------------------AARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDG 163 (499)
T ss_dssp T---THH------------------HHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGG
T ss_pred h---hhH------------------HHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcc
Confidence 0 000 00011111111 235679999999421 112333322221
Q ss_pred C--CCCceEEEEeCchhHhh-----hcCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCc-hhH
Q 045677 140 F--GLGSMIIITTRDEHLLK-----LHRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLP-LAV 211 (352)
Q Consensus 140 ~--~~~~~iiitsr~~~~~~-----~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~P-l~i 211 (352)
. .....++.+|....... ..++...+.++..+.++-.+++............ .....++..+.|+. .-|
T Consensus 164 ~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~d---v~l~~lA~~t~G~~gadL 240 (499)
T 2dhr_A 164 FEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAED---VDLALLAKRTPGFVGADL 240 (499)
T ss_dssp CCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCS---STTHHHHTTSCSCCHHHH
T ss_pred cccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChH---HHHHHHHHhcCCCCHHHH
Confidence 1 12334444554443211 1235568899999999888888766532211111 22556888888887 444
Q ss_pred HHH
Q 045677 212 DVL 214 (352)
Q Consensus 212 ~~~ 214 (352)
..+
T Consensus 241 ~~l 243 (499)
T 2dhr_A 241 ENL 243 (499)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 77
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.21 E-value=3.2e-05 Score=65.93 Aligned_cols=182 Identities=17% Similarity=0.157 Sum_probs=92.4
Q ss_pred CCCCcCcccccHHHHHHHHHHhcC-C---------CCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeecccccc
Q 045677 5 LEIPKELVGMESRLEKLKFLMCTG-S---------NDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCD 74 (352)
Q Consensus 5 ~~~~~~~vGR~~~l~~l~~~l~~~-~---------~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (352)
...-+.++|.+...+++.+....- . .-.+-++|+|++|+|||||++.++...... .+.+. ......
T Consensus 36 ~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~---~i~~~-~~~~~~ 111 (278)
T 1iy2_A 36 KVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVP---FITAS-GSDFVE 111 (278)
T ss_dssp CCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCC---EEEEE-HHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCC---EEEec-HHHHHH
Confidence 334467899988777776544320 0 112238999999999999999999876522 22221 111100
Q ss_pred CCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHHhhhCCceEEEEEeCCCCh----------------hhhhhhhCCCC
Q 045677 75 KEGSVISLQKQLLSDLLMLADNSIRNVYDGVNMIGSRLRHKKVLLLIDDVADV----------------EQLRGLFGKRD 138 (352)
Q Consensus 75 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~----------------~~~~~l~~~~~ 138 (352)
.. .. .........+.......+.++++|+++.. ..+..++..+.
T Consensus 112 ~~--------------~~------~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~ls 171 (278)
T 1iy2_A 112 MF--------------VG------VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMD 171 (278)
T ss_dssp ST--------------TT------HHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHT
T ss_pred HH--------------hh------HHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHh
Confidence 00 00 00011111222222345789999998421 11222322222
Q ss_pred CC-CC-CceEEEEeCchhH-----hhhcCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCCc-hh
Q 045677 139 WF-GL-GSMIIITTRDEHL-----LKLHRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGLP-LA 210 (352)
Q Consensus 139 ~~-~~-~~~iiitsr~~~~-----~~~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~P-l~ 210 (352)
.. .. ...++.++..... ....++...+.++..+.++-.+++............ .....++..+.|+. .-
T Consensus 172 gg~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~---~~~~~la~~~~G~~~~d 248 (278)
T 1iy2_A 172 GFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAED---VDLALLAKRTPGFVGAD 248 (278)
T ss_dssp TCCTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTT---CCHHHHHHTCTTCCHHH
T ss_pred CCCCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcc---cCHHHHHHHcCCCCHHH
Confidence 11 12 2233344443322 222245668899999999888888765522211111 12445777777765 33
Q ss_pred HHH
Q 045677 211 VDV 213 (352)
Q Consensus 211 i~~ 213 (352)
|..
T Consensus 249 l~~ 251 (278)
T 1iy2_A 249 LEN 251 (278)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 78
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=98.17 E-value=7.6e-06 Score=73.12 Aligned_cols=49 Identities=18% Similarity=0.216 Sum_probs=37.7
Q ss_pred cCcccccHHHHHHHHHHh----c------------------------CCCCeEEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 9 KELVGMESRLEKLKFLMC----T------------------------GSNDVRTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 9 ~~~vGR~~~l~~l~~~l~----~------------------------~~~~~~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
..++|.+...+.|...+. . .......++++|++|+|||++|+.+++.+.
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 457999988888887662 0 011235689999999999999999998874
No 79
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.06 E-value=2.4e-05 Score=76.54 Aligned_cols=50 Identities=18% Similarity=0.217 Sum_probs=38.9
Q ss_pred CcCcccccHHHHHHHHHHhcC-------CCCeEEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 8 PKELVGMESRLEKLKFLMCTG-------SNDVRTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 8 ~~~~vGR~~~l~~l~~~l~~~-------~~~~~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
...++|.+..++.+...+... +.....++++|++|+|||++|+.++..+.
T Consensus 457 ~~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~ 513 (758)
T 1r6b_X 457 KMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_dssp TTTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred HhhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhc
Confidence 346889999998887766631 11234789999999999999999998873
No 80
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.00 E-value=5.8e-05 Score=70.57 Aligned_cols=49 Identities=22% Similarity=0.291 Sum_probs=35.0
Q ss_pred cccccHHHHHHHHHHhc----CCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCC
Q 045677 11 LVGMESRLEKLKFLMCT----GSNDVRTIGIWGMGGLGKTTLARVVYDLMSHE 59 (352)
Q Consensus 11 ~vGR~~~l~~l~~~l~~----~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~ 59 (352)
.+|-+...+.+.+.+.- .......++|+||+|+|||+||+.++..+...
T Consensus 83 i~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~ 135 (543)
T 3m6a_A 83 HHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRK 135 (543)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCE
T ss_pred hccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 57777666666443321 12245689999999999999999999887543
No 81
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.99 E-value=3.9e-05 Score=75.12 Aligned_cols=150 Identities=17% Similarity=0.226 Sum_probs=83.6
Q ss_pred cCcccccHHHHHHHHHHhc-----------CCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCC
Q 045677 9 KELVGMESRLEKLKFLMCT-----------GSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEG 77 (352)
Q Consensus 9 ~~~vGR~~~l~~l~~~l~~-----------~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (352)
..++|.+..+++|.+++.. .-.....++|+|++|+|||+||+.++......+ +..+.........
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~----i~v~~~~l~~~~~ 279 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF----FLINGPEIMSKLA 279 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEE----EEEEHHHHSSSST
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcE----EEEEchHhhhhhh
Confidence 5589999999999887763 123456799999999999999999987764332 2222111111000
Q ss_pred cHHHHHHHHHHHHhcccCCCccchhhhHHHHHhhhCCceEEEEEeCCCCh----------------hhhhhhhCCCCCCC
Q 045677 78 SVISLQKQLLSDLLMLADNSIRNVYDGVNMIGSRLRHKKVLLLIDDVADV----------------EQLRGLFGKRDWFG 141 (352)
Q Consensus 78 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~----------------~~~~~l~~~~~~~~ 141 (352)
..........+.......+.++++|+++.. ..+-.++.... ..
T Consensus 280 --------------------g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~-~~ 338 (806)
T 1ypw_A 280 --------------------GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK-QR 338 (806)
T ss_dssp --------------------THHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSC-TT
T ss_pred --------------------hhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhc-cc
Confidence 000011112223333456789999998321 11112222211 12
Q ss_pred CCceEEEEeCch-hHhhh----cCcccEEecCCCCHhHHHHHHHhhh
Q 045677 142 LGSMIIITTRDE-HLLKL----HRVEEVYKLEALNFDEAFRLFCLKA 183 (352)
Q Consensus 142 ~~~~iiitsr~~-~~~~~----~~~~~~~~l~~l~~~e~~~ll~~~~ 183 (352)
....+|.+|... .+... .++...+.+...+.++-.+++....
T Consensus 339 ~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 339 AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp SCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred ccEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHH
Confidence 344555555443 22111 1344567888888888888887654
No 82
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=97.97 E-value=2.1e-05 Score=72.40 Aligned_cols=47 Identities=17% Similarity=0.205 Sum_probs=39.5
Q ss_pred CcCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcC
Q 045677 8 PKELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSH 58 (352)
Q Consensus 8 ~~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~ 58 (352)
...++|++..++.+...+..+ ..++|+|++|+|||+||+.++.....
T Consensus 21 ~~~ivGq~~~i~~l~~al~~~----~~VLL~GpPGtGKT~LAraLa~~l~~ 67 (500)
T 3nbx_X 21 EKGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFAFQN 67 (500)
T ss_dssp HTTCSSCHHHHHHHHHHHHHT----CEEEEECCSSSSHHHHHHHGGGGBSS
T ss_pred HhhhHHHHHHHHHHHHHHhcC----CeeEeecCchHHHHHHHHHHHHHHhh
Confidence 367899999999888877743 46889999999999999999987643
No 83
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.95 E-value=0.00024 Score=60.22 Aligned_cols=150 Identities=14% Similarity=0.111 Sum_probs=75.9
Q ss_pred cCcccccHHHHHHHHHHhc-----------CCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCC
Q 045677 9 KELVGMESRLEKLKFLMCT-----------GSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEG 77 (352)
Q Consensus 9 ~~~vGR~~~l~~l~~~l~~-----------~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (352)
..+.|-+...+.|.+.+.. .-...+-++|+||+|+|||+|++.++...... .+.+. ........
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~---~i~i~-g~~l~~~~- 84 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLN---FISVK-GPELLNMY- 84 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCE---EEEEE-TTTTCSST-
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCC---EEEEE-cHHHHhhh-
Confidence 4466666666666654321 00112238999999999999999999875432 22222 11111100
Q ss_pred cHHHHHHHHHHHHhcccCCCccchhhhHHHH-HhhhCCceEEEEEeCCCChh-------------hhhhhhCCCCC--CC
Q 045677 78 SVISLQKQLLSDLLMLADNSIRNVYDGVNMI-GSRLRHKKVLLLIDDVADVE-------------QLRGLFGKRDW--FG 141 (352)
Q Consensus 78 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~llvlDd~~~~~-------------~~~~l~~~~~~--~~ 141 (352)
. ... ...+..+ .......+.++++|+++... ....++..+.. ..
T Consensus 85 ~-~~~-------------------~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~ 144 (274)
T 2x8a_A 85 V-GES-------------------ERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEAR 144 (274)
T ss_dssp T-HHH-------------------HHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCST
T ss_pred h-hHH-------------------HHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhccccc
Confidence 0 010 0111111 11123467899999995421 01111111110 11
Q ss_pred CCceEEEEeCchhHh-----hhcCcccEEecCCCCHhHHHHHHHhhh
Q 045677 142 LGSMIIITTRDEHLL-----KLHRVEEVYKLEALNFDEAFRLFCLKA 183 (352)
Q Consensus 142 ~~~~iiitsr~~~~~-----~~~~~~~~~~l~~l~~~e~~~ll~~~~ 183 (352)
....++.++...... ...++...+.++.-+.++-.++++...
T Consensus 145 ~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 145 QQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp TCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred CCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 233344455444322 122566788999999998888887655
No 84
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.88 E-value=0.00015 Score=71.77 Aligned_cols=51 Identities=20% Similarity=0.315 Sum_probs=39.7
Q ss_pred cCcccccHHHHHHHHHHhcC-------CCCeEEEEEEcCCCCcHHHHHHHHHHHhcCC
Q 045677 9 KELVGMESRLEKLKFLMCTG-------SNDVRTIGIWGMGGLGKTTLARVVYDLMSHE 59 (352)
Q Consensus 9 ~~~vGR~~~l~~l~~~l~~~-------~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~ 59 (352)
..++|.+..++.+...+... +.....++|+|++|+|||++|+.++..+...
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~ 615 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT 615 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSS
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 35799999999988877641 1122578999999999999999999887443
No 85
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.70 E-value=0.0018 Score=56.85 Aligned_cols=157 Identities=11% Similarity=-0.007 Sum_probs=96.7
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhc-CCCcc-eeEeeeccccccCCCcHHHHHHHHHHHHhcccCCCccchhhhHHHH
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMS-HEFDG-SSFLADVRERCDKEGSVISLQKQLLSDLLMLADNSIRNVYDGVNMI 108 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (352)
-.++.+++|+.|.||++.+..+...+. ..+.. ..+..+ . ...+..+...+...
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-----~-~~~~~~l~~~~~~~------------------- 71 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSID-----P-NTDWNAIFSLCQAM------------------- 71 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECC-----T-TCCHHHHHHHHHHH-------------------
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEec-----C-CCCHHHHHHHhcCc-------------------
Confidence 457899999999999999999988753 22321 111111 1 12223333222110
Q ss_pred HhhhCCceEEEEEeCCCC---hhhhhhhhCCCCCCCCCceEEEEeCc-------hhHhhh-cCcccEEecCCCCHhHHHH
Q 045677 109 GSRLRHKKVLLLIDDVAD---VEQLRGLFGKRDWFGLGSMIIITTRD-------EHLLKL-HRVEEVYKLEALNFDEAFR 177 (352)
Q Consensus 109 ~~~l~~~~~llvlDd~~~---~~~~~~l~~~~~~~~~~~~iiitsr~-------~~~~~~-~~~~~~~~l~~l~~~e~~~ 177 (352)
-+-+.+-++|+|+++. ....+.+...+...+.++.+|+++.. ..+... ......++..+++.++...
T Consensus 72 --plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~ 149 (343)
T 1jr3_D 72 --SLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPR 149 (343)
T ss_dssp --HHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHH
T ss_pred --CCccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHH
Confidence 0124566889999865 34456666555544567777766532 123332 3455789999999999998
Q ss_pred HHHhhhcCCCCCchhHHHHHHHHHHHcCCCchhHHHHHH
Q 045677 178 LFCLKAFDTYKPLEEYLELAKCFVKYASGLPLAVDVLVS 216 (352)
Q Consensus 178 ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~ 216 (352)
++.+.+..... ...++.++.+++.++|+...+.....
T Consensus 150 ~l~~~~~~~g~--~i~~~a~~~l~~~~~gdl~~~~~ele 186 (343)
T 1jr3_D 150 WVAARAKQLNL--ELDDAANQVLCYCYEGNLLALAQALE 186 (343)
T ss_dssp HHHHHHHHTTC--EECHHHHHHHHHSSTTCHHHHHHHHH
T ss_pred HHHHHHHHcCC--CCCHHHHHHHHHHhchHHHHHHHHHH
Confidence 88877632221 23347788999999999988865433
No 86
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.68 E-value=0.00023 Score=58.03 Aligned_cols=24 Identities=29% Similarity=0.091 Sum_probs=21.7
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHH
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYD 54 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~ 54 (352)
...++.|.|++|+|||||+..++.
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999987
No 87
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.57 E-value=5e-05 Score=60.27 Aligned_cols=120 Identities=14% Similarity=-0.008 Sum_probs=58.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHHHHHHHH---hcccCCCc-------cch
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQKQLLSDL---LMLADNSI-------RNV 101 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~-------~~~ 101 (352)
...|.|++..|.||||.|.-++.+...+...+.++...... ...+. ..++..+.-.+ ........ ...
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~-~~~gE-~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a 105 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGT-WPNGE-RNLLEPHGVEFQVMATGFTWETQNREADTAAC 105 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCS-SCCHH-HHHHGGGTCEEEECCTTCCCCGGGHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCC-CCccH-HHHHHhCCcEEEEcccccccCCCCcHHHHHHH
Confidence 35677788888999999988887755443334444222110 11111 22222220000 00000000 111
Q ss_pred hhhHHHHHhhhC-CceEEEEEeCCC-----ChhhhhhhhCCCCCCCCCceEEEEeCch
Q 045677 102 YDGVNMIGSRLR-HKKVLLLIDDVA-----DVEQLRGLFGKRDWFGLGSMIIITTRDE 153 (352)
Q Consensus 102 ~~~~~~~~~~l~-~~~~llvlDd~~-----~~~~~~~l~~~~~~~~~~~~iiitsr~~ 153 (352)
........+.+. ++-=|||||++. ..-..++++..+........+|+|+|..
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 222333444443 345599999982 2222333333333335678899999975
No 88
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.57 E-value=0.00019 Score=63.01 Aligned_cols=49 Identities=22% Similarity=0.194 Sum_probs=33.8
Q ss_pred HHHHHHHh-cCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEee
Q 045677 19 EKLKFLMC-TGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLA 67 (352)
Q Consensus 19 ~~l~~~l~-~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~ 67 (352)
..|-..|. .+=....++.|+|++|+|||||+.+++..........+|+.
T Consensus 47 ~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId 96 (356)
T 3hr8_A 47 LAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFID 96 (356)
T ss_dssp HHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 34444454 22234579999999999999999999988655444445553
No 89
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.56 E-value=9e-05 Score=71.77 Aligned_cols=172 Identities=15% Similarity=0.230 Sum_probs=77.3
Q ss_pred cCcccccHHHHHHHHHHhc-----------CCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCC
Q 045677 9 KELVGMESRLEKLKFLMCT-----------GSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEG 77 (352)
Q Consensus 9 ~~~vGR~~~l~~l~~~l~~-----------~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (352)
....|-+...++|.+.+.- +....+-++++||+|+|||.+|+.++......| +....
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f----~~v~~-------- 544 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF----ISIKG-------- 544 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEE----EECCH--------
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCce----EEecc--------
Confidence 3456666666676665432 112345689999999999999999998865432 21111
Q ss_pred cHHHHHHHHHHHHhcccCCCccchhhhHHHHHhhhCCceEEEEEeCCCChh----------------hhhhhhCCCCCCC
Q 045677 78 SVISLQKQLLSDLLMLADNSIRNVYDGVNMIGSRLRHKKVLLLIDDVADVE----------------QLRGLFGKRDWFG 141 (352)
Q Consensus 78 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~~----------------~~~~l~~~~~~~~ 141 (352)
..++..+.+ .........+...-...+.+|+||+++... .+..|+..+....
T Consensus 545 ------~~l~s~~vG------ese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~ 612 (806)
T 3cf2_A 545 ------PELLTMWFG------ESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS 612 (806)
T ss_dssp ------HHHHTTTCS------SCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSC
T ss_pred ------chhhccccc------hHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCC
Confidence 112222111 111222333334445679999999995311 1233333322111
Q ss_pred -CCceEEE-Ee-Cchh----HhhhcCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHcCCC
Q 045677 142 -LGSMIII-TT-RDEH----LLKLHRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYASGL 207 (352)
Q Consensus 142 -~~~~iii-ts-r~~~----~~~~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 207 (352)
....+|| || |.+. +....++...+.++.-+.++-.++|+.... ....... -.++.+++.|.|+
T Consensus 613 ~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~-~~~~~~~--~dl~~la~~t~g~ 682 (806)
T 3cf2_A 613 TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLR-KSPVAKD--VDLEFLAKMTNGF 682 (806)
T ss_dssp SSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSS-CC--CCC---------------
T ss_pred CCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhc-CCCCCCC--CCHHHHHHhCCCC
Confidence 1223333 33 3222 222235667888877677666776655542 2211111 2255677777764
No 90
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.56 E-value=7.8e-05 Score=63.95 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHH
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
.+.+.|+|++|+|||+||.+++..
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 366789999999999999999876
No 91
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.54 E-value=0.00032 Score=59.96 Aligned_cols=34 Identities=9% Similarity=-0.055 Sum_probs=26.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcCC--CcceeEee
Q 045677 34 TIGIWGMGGLGKTTLARVVYDLMSHE--FDGSSFLA 67 (352)
Q Consensus 34 ~v~I~G~~GiGKT~La~~~~~~~~~~--~~~~~~~~ 67 (352)
++.|+|++|+|||||+.+++....+. ....+|+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId 65 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYD 65 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 78999999999999999998876554 23445543
No 92
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.53 E-value=0.00026 Score=57.76 Aligned_cols=111 Identities=14% Similarity=-0.097 Sum_probs=57.5
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHHHHHHHHhccc-CCCccchhhhHHHHH
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQKQLLSDLLMLA-DNSIRNVYDGVNMIG 109 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 109 (352)
...+++++|++|+||||++..++.+...+.....++...-+.... ..+...+.... ........++...+.
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~--------~~i~srlG~~~~~~~~~~~~~i~~~i~ 82 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSI--------RNIQSRTGTSLPSVEVESAPEILNYIM 82 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGC--------SSCCCCCCCSSCCEEESSTHHHHHHHH
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHH--------HHHHHhcCCCccccccCCHHHHHHHHH
Confidence 457899999999999999999988875543333333211110000 01111111100 001122334444444
Q ss_pred hhhCC-ceEEEEEeCCCC--hhhhhhhhCCCCCCCCCceEEEEeCc
Q 045677 110 SRLRH-KKVLLLIDDVAD--VEQLRGLFGKRDWFGLGSMIIITTRD 152 (352)
Q Consensus 110 ~~l~~-~~~llvlDd~~~--~~~~~~l~~~~~~~~~~~~iiitsr~ 152 (352)
+...+ +.-+|+||++.. .+.++.+.. +. ..+..+|++.++
T Consensus 83 ~~~~~~~~dvViIDEaQ~l~~~~ve~l~~-L~--~~gi~Vil~Gl~ 125 (223)
T 2b8t_A 83 SNSFNDETKVIGIDEVQFFDDRICEVANI-LA--ENGFVVIISGLD 125 (223)
T ss_dssp STTSCTTCCEEEECSGGGSCTHHHHHHHH-HH--HTTCEEEEECCS
T ss_pred HHhhCCCCCEEEEecCccCcHHHHHHHHH-HH--hCCCeEEEEecc
Confidence 44433 455999999942 233333322 21 126789999884
No 93
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.48 E-value=7.9e-05 Score=65.20 Aligned_cols=48 Identities=29% Similarity=0.402 Sum_probs=40.3
Q ss_pred CcCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCC
Q 045677 8 PKELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHE 59 (352)
Q Consensus 8 ~~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~ 59 (352)
...++|++..++.+...+..+ ..++++|++|+|||+||+.+++.+...
T Consensus 26 ~~~i~g~~~~~~~l~~~l~~~----~~vll~G~pGtGKT~la~~la~~~~~~ 73 (331)
T 2r44_A 26 GKVVVGQKYMINRLLIGICTG----GHILLEGVPGLAKTLSVNTLAKTMDLD 73 (331)
T ss_dssp TTTCCSCHHHHHHHHHHHHHT----CCEEEESCCCHHHHHHHHHHHHHTTCC
T ss_pred ccceeCcHHHHHHHHHHHHcC----CeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 467899999999998887743 358899999999999999999877543
No 94
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=97.45 E-value=0.00013 Score=64.75 Aligned_cols=48 Identities=25% Similarity=0.252 Sum_probs=38.1
Q ss_pred CcccccHHHHHHHHHHh-------------cCCCCeEEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 10 ELVGMESRLEKLKFLMC-------------TGSNDVRTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 10 ~~vGR~~~l~~l~~~l~-------------~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
.++|.+..++.+...+. ......+.++++||+|+|||++|+.++..+.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 46999999999888772 1111346689999999999999999998874
No 95
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.33 E-value=0.0016 Score=57.12 Aligned_cols=36 Identities=19% Similarity=0.209 Sum_probs=27.0
Q ss_pred HHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHh
Q 045677 21 LKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLM 56 (352)
Q Consensus 21 l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~ 56 (352)
|-..|..+=....++.|+|++|+|||+|+.+++...
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~ 146 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTA 146 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 344443222345899999999999999999998874
No 96
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.33 E-value=0.00037 Score=56.16 Aligned_cols=45 Identities=24% Similarity=0.280 Sum_probs=35.6
Q ss_pred cccHHHHHHHHHHhcC-CCCeEEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 13 GMESRLEKLKFLMCTG-SNDVRTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 13 GR~~~l~~l~~~l~~~-~~~~~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
.|+..++.|.+.+.+. .....++.|.|++|+||||+++.+...+.
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp CHHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4566788888877753 24457899999999999999999987764
No 97
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.30 E-value=0.00029 Score=60.85 Aligned_cols=58 Identities=12% Similarity=0.149 Sum_probs=38.3
Q ss_pred cCcccc----cHHHHHHHHHHhcCCC-CeEEEEEEcCCCCcHHHHHHHHHHHhc-CCCcceeEe
Q 045677 9 KELVGM----ESRLEKLKFLMCTGSN-DVRTIGIWGMGGLGKTTLARVVYDLMS-HEFDGSSFL 66 (352)
Q Consensus 9 ~~~vGR----~~~l~~l~~~l~~~~~-~~~~v~I~G~~GiGKT~La~~~~~~~~-~~~~~~~~~ 66 (352)
++|++. ...++.+.+++..... ..+.++|+|++|+|||+||..++..+. .......++
T Consensus 124 d~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~ 187 (308)
T 2qgz_A 124 SDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLL 187 (308)
T ss_dssp GGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred hhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEE
Confidence 445543 3344556667664222 246789999999999999999999876 543333333
No 98
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.27 E-value=0.00034 Score=58.00 Aligned_cols=26 Identities=15% Similarity=0.110 Sum_probs=22.7
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHh
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLM 56 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~ 56 (352)
...++.|+|++|+|||||+..++...
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~ 48 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTC 48 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 34789999999999999999999863
No 99
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.26 E-value=0.00053 Score=60.24 Aligned_cols=37 Identities=27% Similarity=0.231 Sum_probs=28.9
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEee
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLA 67 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~ 67 (352)
...++.|+|++|+|||||+.+++...........|+.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~ 96 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFID 96 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 3478999999999999999999887655444455554
No 100
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.25 E-value=0.00012 Score=58.00 Aligned_cols=28 Identities=36% Similarity=0.540 Sum_probs=23.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcCCC
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLMSHEF 60 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~~~~~ 60 (352)
|.|+|+||+|+|||||++.+.......|
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 5688999999999999999987755443
No 101
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.24 E-value=0.00033 Score=56.79 Aligned_cols=41 Identities=17% Similarity=0.158 Sum_probs=31.4
Q ss_pred HHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 17 RLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 17 ~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
-+++|.+.+........++.|.|++|+|||||++.+...+.
T Consensus 7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 7 LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 44566665554334568999999999999999999987765
No 102
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.22 E-value=0.0012 Score=57.98 Aligned_cols=107 Identities=18% Similarity=0.199 Sum_probs=59.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEe-eeccccccCCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHHhh
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFL-ADVRERCDKEGSVISLQKQLLSDLLMLADNSIRNVYDGVNMIGSR 111 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (352)
.+++|+|+.|+|||||++.++..+.......++. .+.......... ....... ...........+...
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~----------~~v~q~~-~~~~~~~~~~~La~a 192 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKK----------CLVNQRE-VHRDTLGFSEALRSA 192 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSS----------SEEEEEE-BTTTBSCHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccc----------cceeeee-eccccCCHHHHHHHH
Confidence 5899999999999999999887764432222222 111000000000 0000000 011123344577788
Q ss_pred hCCceEEEEEeCCCChhhhhhhhCCCCCCCCCceEEEEeCch
Q 045677 112 LRHKKVLLLIDDVADVEQLRGLFGKRDWFGLGSMIIITTRDE 153 (352)
Q Consensus 112 l~~~~~llvlDd~~~~~~~~~l~~~~~~~~~~~~iiitsr~~ 153 (352)
+...|=+|++|+..+.+.++.+.... ..|..+++|+-..
T Consensus 193 L~~~PdvillDEp~d~e~~~~~~~~~---~~G~~vl~t~H~~ 231 (356)
T 3jvv_A 193 LREDPDIILVGEMRDLETIRLALTAA---ETGHLVFGTLHTT 231 (356)
T ss_dssp TTSCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEESCS
T ss_pred hhhCcCEEecCCCCCHHHHHHHHHHH---hcCCEEEEEEccC
Confidence 88889999999998776665544432 2244566666544
No 103
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=97.22 E-value=0.004 Score=55.11 Aligned_cols=51 Identities=24% Similarity=0.321 Sum_probs=37.9
Q ss_pred cCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCC
Q 045677 9 KELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHE 59 (352)
Q Consensus 9 ~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~ 59 (352)
..++|....+.++...+..-......|+|+|++|+||+.+|+.+.......
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~~s~r~ 179 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRYSGRK 179 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred ccccccchHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHHhcccc
Confidence 468899888888777665422233458899999999999999887665443
No 104
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=97.20 E-value=0.00017 Score=63.48 Aligned_cols=47 Identities=23% Similarity=0.340 Sum_probs=35.1
Q ss_pred cCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 9 KELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 9 ~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
..++|.+...+.+....... ....++|+|++|+|||++|+.+++.+.
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~--~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDP--GIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCG--GGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred hhccChHHHHHHHHHHhhCC--CCceEEEECCCCccHHHHHHHHHHhCc
Confidence 45899998666654444321 223489999999999999999998765
No 105
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.20 E-value=0.00011 Score=71.89 Aligned_cols=51 Identities=24% Similarity=0.356 Sum_probs=38.1
Q ss_pred cCcccccHHHHHHHHHHhc-----------CCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCC
Q 045677 9 KELVGMESRLEKLKFLMCT-----------GSNDVRTIGIWGMGGLGKTTLARVVYDLMSHE 59 (352)
Q Consensus 9 ~~~vGR~~~l~~l~~~l~~-----------~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~ 59 (352)
...+|-+...+.|.+.+.. .-.....++++|++|+|||+||+.++......
T Consensus 477 ~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~ 538 (806)
T 1ypw_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN 538 (806)
T ss_dssp CSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCC
T ss_pred cccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4567888777787776642 11234568899999999999999999887544
No 106
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.20 E-value=0.0002 Score=56.33 Aligned_cols=26 Identities=23% Similarity=0.377 Sum_probs=23.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcC
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLMSH 58 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~~~ 58 (352)
.+|+|+|++|+||||+++.+...+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~ 29 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPE 29 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 57899999999999999999988653
No 107
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.17 E-value=0.00082 Score=59.29 Aligned_cols=83 Identities=19% Similarity=0.177 Sum_probs=47.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHHHHHHHHhcccC----CCccchhhhHHH
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQKQLLSDLLMLAD----NSIRNVYDGVNM 107 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----~~~~~~~~~~~~ 107 (352)
..++.|+|++|+|||+|+.+++..........+|+. ... .. .... ...+..... ....+.++....
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~-~E~---s~---~~~~---a~~~g~d~~~l~i~~~~~~e~~l~~ 143 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFID-AEH---AL---DPVY---ARALGVNTDELLVSQPDNGEQALEI 143 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE-SSC---CC---CHHH---HHHTTCCGGGCEEECCSSHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEE-CCC---Ch---hHHH---HHHcCCCHHHceeecCCcHHHHHHH
Confidence 468999999999999999999887654444555554 211 11 1111 222211100 112344555555
Q ss_pred HHhhhC-CceEEEEEeCC
Q 045677 108 IGSRLR-HKKVLLLIDDV 124 (352)
Q Consensus 108 ~~~~l~-~~~~llvlDd~ 124 (352)
+..... ...-+||||.+
T Consensus 144 l~~l~~~~~~~lVVIDsl 161 (366)
T 1xp8_A 144 MELLVRSGAIDVVVVDSV 161 (366)
T ss_dssp HHHHHTTTCCSEEEEECT
T ss_pred HHHHHhcCCCCEEEEeCh
Confidence 554443 34568999998
No 108
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.16 E-value=0.00035 Score=55.71 Aligned_cols=40 Identities=15% Similarity=0.193 Sum_probs=30.2
Q ss_pred HHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcC
Q 045677 18 LEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSH 58 (352)
Q Consensus 18 l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~ 58 (352)
+..+..++.. -+....++|+||+|+|||++|..+++.+..
T Consensus 45 ~~~l~~~~~~-iPkkn~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 45 LGALKSFLKG-TPKKNCLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp HHHHHHHHHT-CTTCSEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhc-CCcccEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5566666663 222356899999999999999999988743
No 109
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.15 E-value=0.00073 Score=59.43 Aligned_cols=37 Identities=30% Similarity=0.320 Sum_probs=28.9
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEee
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLA 67 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~ 67 (352)
...++.|+|++|+|||+||.+++..........+|+.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid 98 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 98 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 3478999999999999999999987655444455554
No 110
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.15 E-value=0.0012 Score=57.41 Aligned_cols=28 Identities=21% Similarity=0.170 Sum_probs=23.9
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcC
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMSH 58 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~~ 58 (352)
...++.|+|++|+|||+|+.+++.....
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~ 133 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQL 133 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhc
Confidence 3478999999999999999999987543
No 111
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=97.11 E-value=0.0021 Score=58.18 Aligned_cols=28 Identities=32% Similarity=0.596 Sum_probs=23.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcCCC
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLMSHEF 60 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~~~~~ 60 (352)
+.+.|+|++|+|||+|++.++.....++
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~~ 179 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQEH 179 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhcc
Confidence 4578999999999999999988765443
No 112
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.07 E-value=0.0051 Score=53.16 Aligned_cols=37 Identities=22% Similarity=0.077 Sum_probs=28.4
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEee
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLA 67 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~ 67 (352)
...++.|.|++|+|||+|+.+++...........|++
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s 103 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 103 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 4578999999999999999999877654434445553
No 113
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.06 E-value=0.0012 Score=53.36 Aligned_cols=23 Identities=26% Similarity=0.231 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 045677 34 TIGIWGMGGLGKTTLARVVYDLM 56 (352)
Q Consensus 34 ~v~I~G~~GiGKT~La~~~~~~~ 56 (352)
+++|.|+||+||+|.|..+++.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999765
No 114
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.04 E-value=0.0023 Score=54.91 Aligned_cols=29 Identities=28% Similarity=0.314 Sum_probs=25.2
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcCC
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMSHE 59 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~~~ 59 (352)
...+++|+|++|+||||++..++..+...
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~ 131 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDE 131 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhc
Confidence 45789999999999999999999887544
No 115
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.04 E-value=0.002 Score=52.30 Aligned_cols=27 Identities=22% Similarity=0.250 Sum_probs=24.0
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHh
Q 045677 30 NDVRTIGIWGMGGLGKTTLARVVYDLM 56 (352)
Q Consensus 30 ~~~~~v~I~G~~GiGKT~La~~~~~~~ 56 (352)
...++|+|.|+||+||||.|..++..+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 456899999999999999999999765
No 116
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.03 E-value=0.0004 Score=54.22 Aligned_cols=25 Identities=20% Similarity=0.025 Sum_probs=22.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
.+|+|.|++|+||||+++.++..+.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3688999999999999999998765
No 117
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=97.01 E-value=0.011 Score=52.68 Aligned_cols=49 Identities=22% Similarity=0.227 Sum_probs=37.3
Q ss_pred cCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 9 KELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 9 ~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
..++|....++++.+.+..-......|+|+|++|+|||.+|+.+.....
T Consensus 137 ~~~ig~s~~m~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lAr~ih~~s~ 185 (387)
T 1ny5_A 137 EEYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSD 185 (387)
T ss_dssp CCCCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHST
T ss_pred hhhhhccHHhhHHHHHHHHhcCCCCCeEEecCCCcCHHHHHHHHHHhcC
Confidence 4688999888888887765222334569999999999999988776643
No 118
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.00 E-value=0.001 Score=56.72 Aligned_cols=30 Identities=20% Similarity=0.163 Sum_probs=25.4
Q ss_pred CCCeEEEEEEcCCCCcHHHHHHHHHHHhcC
Q 045677 29 SNDVRTIGIWGMGGLGKTTLARVVYDLMSH 58 (352)
Q Consensus 29 ~~~~~~v~I~G~~GiGKT~La~~~~~~~~~ 58 (352)
.....+|.|.|++|+|||||++.+...+..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 455688999999999999999998877653
No 119
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.97 E-value=0.0008 Score=55.95 Aligned_cols=44 Identities=20% Similarity=0.032 Sum_probs=31.0
Q ss_pred cccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHh
Q 045677 13 GMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLM 56 (352)
Q Consensus 13 GR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~ 56 (352)
+....+.++.+.+.........|+|.|++|+||||+++.+++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 10 STIDLLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CHHHHHHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 34444555555443322345789999999999999999998765
No 120
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.95 E-value=0.00083 Score=53.41 Aligned_cols=27 Identities=22% Similarity=0.417 Sum_probs=23.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcCC
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLMSHE 59 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~~~~ 59 (352)
.+|+|.|++|+||||+++.++..+...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~ 28 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQ 28 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 468999999999999999999887643
No 121
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.93 E-value=0.00081 Score=53.31 Aligned_cols=29 Identities=34% Similarity=0.447 Sum_probs=25.1
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcCC
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMSHE 59 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~~~ 59 (352)
...+++|.|++|+||||+++.++..+...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~ 40 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKE 40 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 45789999999999999999999887543
No 122
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=96.93 E-value=0.0031 Score=50.50 Aligned_cols=23 Identities=26% Similarity=0.104 Sum_probs=19.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
-+++|+|++|+|||++|......
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 46789999999999999776544
No 123
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.93 E-value=0.00092 Score=53.73 Aligned_cols=27 Identities=30% Similarity=0.396 Sum_probs=24.3
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
...+++|.|++|+||||+++.++..+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 458899999999999999999998875
No 124
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.92 E-value=0.00051 Score=54.22 Aligned_cols=26 Identities=15% Similarity=0.351 Sum_probs=22.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
.+++.|+||+|+|||||++.+.....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 36899999999999999999987654
No 125
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.92 E-value=0.0028 Score=55.03 Aligned_cols=26 Identities=19% Similarity=0.146 Sum_probs=23.0
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHh
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLM 56 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~ 56 (352)
...++.|+|++|+|||+|+.+++...
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35789999999999999999998763
No 126
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.92 E-value=0.00058 Score=53.70 Aligned_cols=22 Identities=36% Similarity=0.385 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHH
Q 045677 33 RTIGIWGMGGLGKTTLARVVYD 54 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~ 54 (352)
.+++|.|++|+||||+++.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999987
No 127
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.92 E-value=0.00057 Score=54.12 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=22.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
+.|+|+|++|+||||+++.++..+.
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5788999999999999999998764
No 128
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.91 E-value=0.00059 Score=54.83 Aligned_cols=26 Identities=31% Similarity=0.349 Sum_probs=23.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
...++|.|++|+||||+++.++..+.
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 36899999999999999999998774
No 129
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=96.90 E-value=0.0011 Score=55.42 Aligned_cols=38 Identities=18% Similarity=0.160 Sum_probs=29.2
Q ss_pred HHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHh
Q 045677 19 EKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLM 56 (352)
Q Consensus 19 ~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~ 56 (352)
..+..|+....+....++++||+|+|||.|+..+++..
T Consensus 91 ~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 34666666432445679999999999999999999764
No 130
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.89 E-value=0.0025 Score=55.93 Aligned_cols=27 Identities=26% Similarity=0.336 Sum_probs=24.0
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
...++.|+|++|+|||||+..++....
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~ 156 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQ 156 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 458999999999999999999998763
No 131
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.88 E-value=0.00072 Score=53.82 Aligned_cols=26 Identities=27% Similarity=0.227 Sum_probs=23.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
..+|+|.|++|+||||+++.+...+.
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 47899999999999999999988763
No 132
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.87 E-value=0.00043 Score=60.75 Aligned_cols=27 Identities=19% Similarity=-0.002 Sum_probs=23.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcC
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLMSH 58 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~~~ 58 (352)
.+.+.|+|++|+|||+|+..++..+.+
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Iar~i~~ 200 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIAQSIAY 200 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHHHHHH
T ss_pred CcEEEEecCCCCChhHHHHHHHHHHhh
Confidence 467889999999999999998887644
No 133
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.86 E-value=0.0012 Score=56.32 Aligned_cols=28 Identities=21% Similarity=0.343 Sum_probs=24.0
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 30 NDVRTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 30 ~~~~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
....+++|.|++|+||||+++.+...+.
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~ 58 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ 58 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3467899999999999999999987653
No 134
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.84 E-value=0.0057 Score=55.01 Aligned_cols=30 Identities=27% Similarity=0.119 Sum_probs=25.7
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcCCC
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMSHEF 60 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~~~~ 60 (352)
.+.+++++|++|+||||++..++..+....
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G 125 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRG 125 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 368999999999999999999998776543
No 135
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.83 E-value=0.00068 Score=54.13 Aligned_cols=27 Identities=15% Similarity=0.380 Sum_probs=23.4
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
..++++|+||+|+|||||++.+.....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 357899999999999999999987654
No 136
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.83 E-value=0.013 Score=48.04 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHh
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLM 56 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~ 56 (352)
..++.|.|+.|+|||||++.++--.
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3688999999999999999887643
No 137
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.81 E-value=0.00071 Score=53.83 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHH
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
..+++|.|++|+|||||++.++..
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 478999999999999999999865
No 138
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.81 E-value=0.0082 Score=54.59 Aligned_cols=53 Identities=13% Similarity=0.052 Sum_probs=34.7
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcCC-CcceeEeeeccccccCCCcHHHHHHHHHHHH
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMSHE-FDGSSFLADVRERCDKEGSVISLQKQLLSDL 90 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 90 (352)
...++.|.|++|+|||+|+.+++...... ...+.|++ . . ....++...++...
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~s-l-----E-~~~~~l~~R~~~~~ 252 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYS-L-----E-MPAAQLTLRMMCSE 252 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEE-S-----S-SCHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE-C-----C-CCHHHHHHHHHHHH
Confidence 45789999999999999999999876533 23344443 1 1 11245666655443
No 139
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.81 E-value=0.00075 Score=54.64 Aligned_cols=27 Identities=26% Similarity=0.271 Sum_probs=23.5
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
...+++|+||+|+|||||++.++....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 347899999999999999999987654
No 140
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.79 E-value=0.00067 Score=52.99 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHh
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLM 56 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~ 56 (352)
.+++|.|++|+||||+++.+ ...
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHC
Confidence 47899999999999999998 443
No 141
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.78 E-value=0.0012 Score=51.60 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=22.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHh
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLM 56 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~ 56 (352)
..+++|.|++|+||||+++.+...+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4789999999999999999998765
No 142
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.77 E-value=0.0061 Score=54.89 Aligned_cols=30 Identities=20% Similarity=0.191 Sum_probs=26.0
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcCCC
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMSHEF 60 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~~~~ 60 (352)
.+.+++++|++|+||||++..++..+....
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G 128 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRG 128 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCC
Confidence 368999999999999999999998876653
No 143
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.76 E-value=0.00068 Score=52.98 Aligned_cols=25 Identities=32% Similarity=0.444 Sum_probs=22.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
.+++|+|++|+||||+++.++..+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 5689999999999999999987754
No 144
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.76 E-value=0.00096 Score=55.81 Aligned_cols=25 Identities=24% Similarity=0.127 Sum_probs=22.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
++++|.|++|+|||||+..++..+.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4788999999999999999998764
No 145
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.75 E-value=0.00087 Score=53.23 Aligned_cols=27 Identities=26% Similarity=0.489 Sum_probs=23.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcCC
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLMSHE 59 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~~~~ 59 (352)
.+++|.|++|+||||+++.++..+...
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~~ 30 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRKE 30 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 578999999999999999999887643
No 146
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.75 E-value=0.00068 Score=54.71 Aligned_cols=26 Identities=27% Similarity=0.455 Sum_probs=23.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
.++++|.|++|+||||+++.+...+.
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 46889999999999999999988764
No 147
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.74 E-value=0.00071 Score=53.32 Aligned_cols=26 Identities=31% Similarity=0.388 Sum_probs=22.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
.+.|+|+|++|+||||+++.++..+.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 36788999999999999999997763
No 148
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.73 E-value=0.011 Score=51.23 Aligned_cols=29 Identities=24% Similarity=0.288 Sum_probs=24.9
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcCC
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMSHE 59 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~~~ 59 (352)
...++.|+|++|+||||+++.++..+...
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~ 156 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNH 156 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 46899999999999999999998776544
No 149
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.72 E-value=0.00096 Score=55.53 Aligned_cols=27 Identities=22% Similarity=0.249 Sum_probs=23.6
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
...+++|.|++|+|||||++.+++.+.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346899999999999999999997764
No 150
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.72 E-value=0.0008 Score=53.39 Aligned_cols=26 Identities=35% Similarity=0.489 Sum_probs=22.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcC
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLMSH 58 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~~~ 58 (352)
+++.|.||+|+|||||++.+......
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~ 27 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCc
Confidence 56889999999999999999877653
No 151
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.71 E-value=0.001 Score=53.44 Aligned_cols=26 Identities=38% Similarity=0.495 Sum_probs=23.2
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHh
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLM 56 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~ 56 (352)
...+++|.|++|+||||+++.++..+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 34789999999999999999998776
No 152
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.71 E-value=0.0013 Score=62.43 Aligned_cols=47 Identities=26% Similarity=0.427 Sum_probs=39.8
Q ss_pred cCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCC
Q 045677 9 KELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHE 59 (352)
Q Consensus 9 ~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~ 59 (352)
..++|.+..++.+...+..+ ..++|+|++|+||||||+.++..+...
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~~l~~~ 87 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAELLPTE 87 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHHTSCCS
T ss_pred ceEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhccCCcc
Confidence 56899999999998888843 578999999999999999999876544
No 153
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.69 E-value=0.0014 Score=59.11 Aligned_cols=51 Identities=20% Similarity=0.307 Sum_probs=38.3
Q ss_pred cCcccccHHHHHHHHHHhcC------------CCCeEEEEEEcCCCCcHHHHHHHHHHHhcCC
Q 045677 9 KELVGMESRLEKLKFLMCTG------------SNDVRTIGIWGMGGLGKTTLARVVYDLMSHE 59 (352)
Q Consensus 9 ~~~vGR~~~l~~l~~~l~~~------------~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~ 59 (352)
...+|.+...+.|...+... ....+-++++|++|+|||++|+.++..+...
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~ 77 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAP 77 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 46789888888887666320 1123568999999999999999999887544
No 154
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.69 E-value=0.0014 Score=51.79 Aligned_cols=26 Identities=23% Similarity=0.212 Sum_probs=22.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
...++|.|++|+||||+++.++..+.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46789999999999999999987753
No 155
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.67 E-value=0.0013 Score=52.35 Aligned_cols=25 Identities=20% Similarity=0.206 Sum_probs=22.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
.+|+|.|++|+||||+++.++..+.
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 6799999999999999999987753
No 156
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.67 E-value=0.012 Score=51.17 Aligned_cols=37 Identities=16% Similarity=0.079 Sum_probs=28.0
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEee
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLA 67 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~ 67 (352)
...+++|.|++|+|||+|+.+++.........+.|++
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fS 81 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFS 81 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 3478999999999999999999887654433444443
No 157
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.66 E-value=0.0071 Score=51.72 Aligned_cols=28 Identities=25% Similarity=0.290 Sum_probs=24.4
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcC
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMSH 58 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~~ 58 (352)
...++.|+|++|+||||++..++..+..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~ 131 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISML 131 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4578999999999999999999988753
No 158
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.66 E-value=0.0014 Score=53.06 Aligned_cols=27 Identities=26% Similarity=0.403 Sum_probs=24.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcCC
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLMSHE 59 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~~~~ 59 (352)
.+|+|.|++|+||||+++.++..+...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 689999999999999999999887654
No 159
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.65 E-value=0.014 Score=49.81 Aligned_cols=28 Identities=29% Similarity=0.279 Sum_probs=24.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcCC
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLMSHE 59 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~~~~ 59 (352)
..++.++|++|+||||++..++..+...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~ 125 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKK 125 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 5788899999999999999999877554
No 160
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.65 E-value=0.001 Score=53.54 Aligned_cols=25 Identities=20% Similarity=0.424 Sum_probs=22.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHh
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLM 56 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~ 56 (352)
..+|+|.|++|+||||+++.++..+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998876
No 161
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.64 E-value=0.0016 Score=50.54 Aligned_cols=28 Identities=25% Similarity=0.187 Sum_probs=24.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcCC
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLMSHE 59 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~~~~ 59 (352)
.+++.|.|++|+|||||+..++..+...
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 4678999999999999999999887654
No 162
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.64 E-value=0.0012 Score=53.16 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=21.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHh
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLM 56 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~ 56 (352)
.++.|.|++|+|||||++.++...
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 689999999999999999988764
No 163
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.62 E-value=0.0013 Score=51.06 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=22.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
+.++|.|++|+||||+++.++..+.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 6799999999999999999998765
No 164
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.60 E-value=0.0012 Score=51.72 Aligned_cols=24 Identities=38% Similarity=0.473 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 34 TIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 34 ~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
.++|.|++|+||||+++.++..+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999998764
No 165
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.60 E-value=0.0015 Score=54.61 Aligned_cols=29 Identities=21% Similarity=0.366 Sum_probs=24.2
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHhcC
Q 045677 30 NDVRTIGIWGMGGLGKTTLARVVYDLMSH 58 (352)
Q Consensus 30 ~~~~~v~I~G~~GiGKT~La~~~~~~~~~ 58 (352)
....+|.|.|++|+||||+++.+...+..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg~ 48 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLGQ 48 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTTG
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 34578999999999999999999887653
No 166
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.60 E-value=0.0022 Score=55.34 Aligned_cols=47 Identities=28% Similarity=0.352 Sum_probs=32.4
Q ss_pred ccccHHHHHHHHHHhcC--CCCeEEEEEEcCCCCcHHHHHHHHHHHhcC
Q 045677 12 VGMESRLEKLKFLMCTG--SNDVRTIGIWGMGGLGKTTLARVVYDLMSH 58 (352)
Q Consensus 12 vGR~~~l~~l~~~l~~~--~~~~~~v~I~G~~GiGKT~La~~~~~~~~~ 58 (352)
+|....+..+...+... ...+.++.|.|++|+|||||++.+...+..
T Consensus 70 ~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~ 118 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSR 118 (321)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred hcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 44445555554444432 334568999999999999999998877653
No 167
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.60 E-value=0.0013 Score=52.43 Aligned_cols=26 Identities=23% Similarity=0.192 Sum_probs=23.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
..+|+|.|++|+||||+++.++..+.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 36899999999999999999998764
No 168
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.59 E-value=0.0017 Score=52.22 Aligned_cols=26 Identities=27% Similarity=0.233 Sum_probs=23.0
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHh
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLM 56 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~ 56 (352)
...+|+|.|++|+||||+++.++..+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999998765
No 169
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.59 E-value=0.0016 Score=54.04 Aligned_cols=36 Identities=17% Similarity=0.065 Sum_probs=27.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEee
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLA 67 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~ 67 (352)
..++.|.|++|+|||||+.+++..........+|+.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 468999999999999999988876544433444443
No 170
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.59 E-value=0.014 Score=53.96 Aligned_cols=37 Identities=11% Similarity=-0.068 Sum_probs=28.7
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcCC-CcceeEee
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMSHE-FDGSSFLA 67 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~~~-~~~~~~~~ 67 (352)
...++.|.|++|+|||+|+.+++...... ...+.|++
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s 278 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAM 278 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEE
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEe
Confidence 35789999999999999999999887654 33445543
No 171
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.58 E-value=0.0024 Score=67.53 Aligned_cols=85 Identities=18% Similarity=0.129 Sum_probs=50.8
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHHHHHHHHhcc----cCCCccchhhhHH
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQKQLLSDLLML----ADNSIRNVYDGVN 106 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~~~~~~~ 106 (352)
+.+.+.|+||+|+|||+||.+++.....+.....|+. ....... +. +..+... .-......+....
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~----~e~~~~~---l~---a~~~G~dl~~l~v~~~~~~E~~l~ 1495 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID----AEHALDP---IY---ARKLGVDIDNLLCSQPDTGEQALE 1495 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEC----TTSCCCH---HH---HHHTTCCTTTCEEECCSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEE----cccccCH---HH---HHHcCCCchhceeecCChHHHHHH
Confidence 4578999999999999999999988776655566664 1111111 11 2222200 0011223345555
Q ss_pred HHHhhh-CCceEEEEEeCCC
Q 045677 107 MIGSRL-RHKKVLLLIDDVA 125 (352)
Q Consensus 107 ~~~~~l-~~~~~llvlDd~~ 125 (352)
.+.... ..++-+||||.+.
T Consensus 1496 ~~~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1496 ICDALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHHHHTCCSEEEESCGG
T ss_pred HHHHHHhcCCCCEEEEcChh
Confidence 555443 3567899999983
No 172
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.58 E-value=0.00099 Score=53.46 Aligned_cols=25 Identities=32% Similarity=0.502 Sum_probs=21.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
+.+.|+||+|+|||||++.+.....
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5789999999999999999987653
No 173
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.58 E-value=0.0043 Score=54.62 Aligned_cols=40 Identities=23% Similarity=0.353 Sum_probs=29.5
Q ss_pred HHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCC
Q 045677 20 KLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHE 59 (352)
Q Consensus 20 ~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~ 59 (352)
.+.+.+....++...|.|+|.+|+|||||+..++..+...
T Consensus 67 ~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~ 106 (355)
T 3p32_A 67 QLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIER 106 (355)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred HHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 3444444334456889999999999999999998876443
No 174
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.57 E-value=0.0011 Score=52.47 Aligned_cols=25 Identities=24% Similarity=0.395 Sum_probs=22.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
++|+|+|++|+||||+++.++..+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4588999999999999999998764
No 175
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.56 E-value=0.01 Score=55.71 Aligned_cols=28 Identities=32% Similarity=0.316 Sum_probs=24.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcCCC
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLMSHEF 60 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~~~~~ 60 (352)
++++|+|++|+||||++..+...+....
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g 232 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLG 232 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence 6888999999999999999988765543
No 176
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.55 E-value=0.0019 Score=52.32 Aligned_cols=28 Identities=21% Similarity=0.248 Sum_probs=24.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcCC
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLMSHE 59 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~~~~ 59 (352)
..+|+|.|++|+||||+++.++..+...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3689999999999999999999887543
No 177
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.54 E-value=0.0021 Score=51.03 Aligned_cols=26 Identities=19% Similarity=0.153 Sum_probs=23.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
..+|+|.|++|+||||+++.++..+.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 47899999999999999999988764
No 178
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.53 E-value=0.0018 Score=51.94 Aligned_cols=27 Identities=22% Similarity=0.213 Sum_probs=23.4
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
...+|+|.|++|+||||+++.++..+.
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345799999999999999999998764
No 179
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.53 E-value=0.00092 Score=52.71 Aligned_cols=26 Identities=31% Similarity=0.282 Sum_probs=18.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcC
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLMSH 58 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~~~ 58 (352)
.+|+|.|++|+||||+++.+...+..
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~ 31 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPG 31 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 57999999999999999999877653
No 180
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.52 E-value=0.0017 Score=52.13 Aligned_cols=25 Identities=28% Similarity=0.482 Sum_probs=22.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcC
Q 045677 34 TIGIWGMGGLGKTTLARVVYDLMSH 58 (352)
Q Consensus 34 ~v~I~G~~GiGKT~La~~~~~~~~~ 58 (352)
.|+|.|++|+||||+++.++..+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~ 26 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGY 26 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCC
Confidence 5889999999999999999987753
No 181
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=96.52 E-value=0.0016 Score=52.48 Aligned_cols=52 Identities=19% Similarity=0.143 Sum_probs=20.6
Q ss_pred CCCCCCCcCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHH
Q 045677 2 NSELEIPKELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 2 ~~~~~~~~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
.+||+.+..--+++...+.+.+... ....--|+|.|.+|+|||||+..+...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~m~~~~~--~~~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 2 GSSHHHHHHSSGLVPRGSHMENLYF--QGQAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp ------------------------------CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CcccccccccCCcccchhHHHhHhh--cCCeEEEEEECcCCCCHHHHHHHHHhC
Confidence 4566666555566666666655544 233456889999999999999888854
No 182
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.52 E-value=0.0014 Score=52.38 Aligned_cols=25 Identities=28% Similarity=0.260 Sum_probs=22.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
.+|+|.|++|+||||+++.++..+.
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 6899999999999999999998764
No 183
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.52 E-value=0.0016 Score=52.47 Aligned_cols=25 Identities=24% Similarity=0.321 Sum_probs=22.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHh
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLM 56 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~ 56 (352)
..++.|.|++|+||||+++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3689999999999999999988765
No 184
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.52 E-value=0.0016 Score=53.10 Aligned_cols=26 Identities=23% Similarity=0.201 Sum_probs=23.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
...|+|.|++|+||||+++.++..+.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 36789999999999999999998764
No 185
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.52 E-value=0.0014 Score=51.24 Aligned_cols=21 Identities=29% Similarity=0.452 Sum_probs=18.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHH
Q 045677 32 VRTIGIWGMGGLGKTTLARVV 52 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~ 52 (352)
..++.|.|++|+|||||++.+
T Consensus 9 gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHH
Confidence 478999999999999999953
No 186
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.51 E-value=0.0019 Score=51.28 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHH
Q 045677 33 RTIGIWGMGGLGKTTLARVVYD 54 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~ 54 (352)
.++.|.|++|+|||||++.++.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999975
No 187
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.51 E-value=0.0013 Score=51.25 Aligned_cols=25 Identities=28% Similarity=0.345 Sum_probs=22.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
++|+|.|++|+||||+++.+...+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999998764
No 188
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.51 E-value=0.0015 Score=51.33 Aligned_cols=24 Identities=38% Similarity=0.516 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 34 TIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 34 ~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
.+.|+|++|+|||||++.++..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999987654
No 189
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.51 E-value=0.0017 Score=51.32 Aligned_cols=24 Identities=33% Similarity=0.327 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHH
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
...++|+|++|+||||+++.++..
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 467999999999999999999876
No 190
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.50 E-value=0.0014 Score=53.37 Aligned_cols=26 Identities=15% Similarity=0.152 Sum_probs=23.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
..+++|.||+|+|||||++.+.....
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 47899999999999999999887654
No 191
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.49 E-value=0.0019 Score=54.29 Aligned_cols=26 Identities=27% Similarity=0.519 Sum_probs=23.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
..+|+|.|++|+||||+++.+...+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998754
No 192
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.49 E-value=0.0027 Score=54.50 Aligned_cols=29 Identities=24% Similarity=0.282 Sum_probs=24.6
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcCC
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMSHE 59 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~~~ 59 (352)
...++.|+|++|+||||++..++..+...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~ 129 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL 129 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 45789999999999999999998776544
No 193
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.48 E-value=0.0033 Score=51.13 Aligned_cols=41 Identities=24% Similarity=0.253 Sum_probs=29.8
Q ss_pred HHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCC
Q 045677 17 RLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHE 59 (352)
Q Consensus 17 ~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~ 59 (352)
..+.+...+. ....+.+.|.|.+|+|||||+..+.......
T Consensus 17 ~~~~~~~~~~--~~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~ 57 (221)
T 2wsm_A 17 LAEKNREALR--ESGTVAVNIMGAIGSGKTLLIERTIERIGNE 57 (221)
T ss_dssp HHHHHHHHHH--HHTCEEEEEEECTTSCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhhc--ccCceEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 3444444443 2345789999999999999999999876444
No 194
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.48 E-value=0.0018 Score=53.09 Aligned_cols=35 Identities=20% Similarity=0.115 Sum_probs=26.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEe
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFL 66 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~ 66 (352)
..++.|.|++|+|||||+..++...........|+
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~ 57 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYV 57 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 36899999999999999999987654332333443
No 195
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=96.46 E-value=0.0027 Score=54.78 Aligned_cols=34 Identities=21% Similarity=0.345 Sum_probs=27.4
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcce
Q 045677 30 NDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGS 63 (352)
Q Consensus 30 ~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~ 63 (352)
++.+++.|+|-|||||||.+..++..+.+....+
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkV 79 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRV 79 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHCCCeE
Confidence 4569999999999999999999988876654333
No 196
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.46 E-value=0.0021 Score=51.95 Aligned_cols=27 Identities=37% Similarity=0.383 Sum_probs=23.3
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
...++.|.|+.|+|||||++.+...+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 347899999999999999999887654
No 197
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.46 E-value=0.0051 Score=50.16 Aligned_cols=29 Identities=28% Similarity=0.338 Sum_probs=24.2
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcCC
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMSHE 59 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~~~ 59 (352)
..+.++|.|.+|+|||||+..++......
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~ 65 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDK 65 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 45788899999999999999999875433
No 198
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.45 E-value=0.003 Score=52.78 Aligned_cols=28 Identities=29% Similarity=0.342 Sum_probs=24.2
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 30 NDVRTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 30 ~~~~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
..+..++|.|++|+||||+++.+...+.
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3457899999999999999999988764
No 199
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.44 E-value=0.0027 Score=55.27 Aligned_cols=47 Identities=17% Similarity=0.226 Sum_probs=32.2
Q ss_pred cccHHHHHHHHHHhc--CCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCC
Q 045677 13 GMESRLEKLKFLMCT--GSNDVRTIGIWGMGGLGKTTLARVVYDLMSHE 59 (352)
Q Consensus 13 GR~~~l~~l~~~l~~--~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~ 59 (352)
+-+...+.+.+.+.. ..+....+.|+|++|+||||+++.++..+...
T Consensus 3 ~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~ 51 (359)
T 2ga8_A 3 DTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINEK 51 (359)
T ss_dssp CHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 334445555555432 23345678899999999999999998876543
No 200
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.44 E-value=0.02 Score=51.59 Aligned_cols=29 Identities=21% Similarity=0.265 Sum_probs=25.5
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcCC
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMSHE 59 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~~~ 59 (352)
.+++++|+|.+|+||||++..++..+...
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~ 127 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREK 127 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 46789999999999999999999887665
No 201
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.43 E-value=0.0018 Score=52.37 Aligned_cols=28 Identities=18% Similarity=0.325 Sum_probs=24.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcCC
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLMSHE 59 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~~~~ 59 (352)
..+|+|.|++|+||||+++.+...+...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 4689999999999999999999876543
No 202
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.41 E-value=0.0023 Score=49.58 Aligned_cols=24 Identities=21% Similarity=0.284 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 34 TIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 34 ~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
.|+|.|++|+||||+++.+...+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999998764
No 203
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.40 E-value=0.0016 Score=53.17 Aligned_cols=26 Identities=19% Similarity=0.134 Sum_probs=23.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
...|+|.|++|+||||+++.++..+.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999998765
No 204
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.40 E-value=0.0022 Score=51.36 Aligned_cols=26 Identities=35% Similarity=0.397 Sum_probs=22.8
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHH
Q 045677 30 NDVRTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 30 ~~~~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
....+|.|+|++|+||||+++.++..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 44578999999999999999999875
No 205
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.39 E-value=0.0018 Score=53.13 Aligned_cols=26 Identities=23% Similarity=0.259 Sum_probs=22.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
...|+|.|++|+||||+++.++..+.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 36799999999999999999987653
No 206
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.39 E-value=0.032 Score=51.23 Aligned_cols=29 Identities=24% Similarity=0.252 Sum_probs=24.0
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcCC
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMSHE 59 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~~~ 59 (352)
..++|.|+|.+|+||||++..++..+...
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~ 128 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRK 128 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 46789999999999999999999877654
No 207
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.38 E-value=0.0026 Score=54.23 Aligned_cols=28 Identities=25% Similarity=0.263 Sum_probs=23.9
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 30 NDVRTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 30 ~~~~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
...++++|.||+|+|||+|+..++..+.
T Consensus 8 ~~~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 8 SLPKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCccCHHHHHHHHHHhCC
Confidence 3457899999999999999999998753
No 208
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.37 E-value=0.0023 Score=52.69 Aligned_cols=26 Identities=23% Similarity=0.114 Sum_probs=23.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
...|+|.|++|+||||+++.++..+.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999998764
No 209
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.36 E-value=0.0024 Score=51.84 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 34 TIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 34 ~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
.|+|.|++|+||||+++.++..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 377999999999999999987753
No 210
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.36 E-value=0.002 Score=52.02 Aligned_cols=26 Identities=23% Similarity=0.404 Sum_probs=22.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
..++.|.|++|+|||||++.+.....
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999887653
No 211
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.35 E-value=0.0024 Score=52.29 Aligned_cols=25 Identities=32% Similarity=0.444 Sum_probs=21.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
..+.|+|++|+||||+++.+...+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999987653
No 212
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.35 E-value=0.0016 Score=53.08 Aligned_cols=25 Identities=28% Similarity=0.469 Sum_probs=22.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHh
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLM 56 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~ 56 (352)
..++.|+|++|+|||||++.+....
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3678999999999999999988755
No 213
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.35 E-value=0.0029 Score=49.72 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=23.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
..++.|+|++|+||||+++.+...+.
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 47889999999999999999988764
No 214
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.34 E-value=0.0026 Score=50.75 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=22.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcC
Q 045677 34 TIGIWGMGGLGKTTLARVVYDLMSH 58 (352)
Q Consensus 34 ~v~I~G~~GiGKT~La~~~~~~~~~ 58 (352)
+|+|.|++|+||||+++.+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5889999999999999999988744
No 215
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.34 E-value=0.0019 Score=51.26 Aligned_cols=25 Identities=24% Similarity=0.124 Sum_probs=21.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHh
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLM 56 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~ 56 (352)
.+.++|.|++|+|||+||.+++.+.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 3678999999999999999998763
No 216
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.33 E-value=0.0026 Score=52.07 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=22.9
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHh
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLM 56 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~ 56 (352)
...++.|.|++|+|||||++.++...
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34789999999999999999998754
No 217
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.33 E-value=0.0023 Score=51.57 Aligned_cols=26 Identities=38% Similarity=0.470 Sum_probs=22.4
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHh
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLM 56 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~ 56 (352)
...++.|+|++|+||||+++.+...+
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999999988653
No 218
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.32 E-value=0.0036 Score=53.92 Aligned_cols=39 Identities=18% Similarity=0.305 Sum_probs=28.6
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeec
Q 045677 30 NDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADV 69 (352)
Q Consensus 30 ~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~ 69 (352)
...++|+|+|.||+||||++..++..+.+... .+.+.++
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~-~VlliD~ 77 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGK-RVLQIGC 77 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTC-CEEEEEE
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHCCC-eEEEEeC
Confidence 35678888899999999999999988766533 3444344
No 219
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.32 E-value=0.0025 Score=54.48 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=21.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHh
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLM 56 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~ 56 (352)
++++|.||+|+|||+|+..++..+
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred cEEEEECCCcCCHHHHHHHHHHhC
Confidence 688999999999999999999765
No 220
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.31 E-value=0.0029 Score=48.60 Aligned_cols=26 Identities=31% Similarity=0.282 Sum_probs=23.3
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHh
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLM 56 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~ 56 (352)
...++.|.|+.|+|||||++.++..+
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 44789999999999999999998876
No 221
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.31 E-value=0.023 Score=51.80 Aligned_cols=36 Identities=14% Similarity=0.131 Sum_probs=27.2
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcCC-CcceeEe
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMSHE-FDGSSFL 66 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~~~-~~~~~~~ 66 (352)
...++.|.|++|+|||||+.+++...... ...+.|+
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~ 238 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIF 238 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 34789999999999999999999876542 2234444
No 222
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=96.31 E-value=0.021 Score=51.57 Aligned_cols=26 Identities=31% Similarity=0.560 Sum_probs=22.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcC
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLMSH 58 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~~~ 58 (352)
+-+.|.|.+|+|||+|+.+++....+
T Consensus 154 Qr~~Ifgg~G~GKT~L~~~i~~~~~~ 179 (482)
T 2ck3_D 154 GKIGLFGGAGVGKTVLIMELINNVAK 179 (482)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTT
T ss_pred CeeeeecCCCCChHHHHHHHHHhhHh
Confidence 56789999999999999999988643
No 223
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.31 E-value=0.0027 Score=50.45 Aligned_cols=24 Identities=38% Similarity=0.631 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 34 TIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 34 ~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
+++|.|++|+||||+++.+...+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999998774
No 224
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.28 E-value=0.0033 Score=50.85 Aligned_cols=27 Identities=30% Similarity=0.251 Sum_probs=23.8
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
...+++|.|++|+||||+++.+...+.
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 347899999999999999999988765
No 225
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.28 E-value=0.0026 Score=51.62 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 045677 34 TIGIWGMGGLGKTTLARVVYDLM 56 (352)
Q Consensus 34 ~v~I~G~~GiGKT~La~~~~~~~ 56 (352)
.|+|.|++|+||||+++.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37799999999999999998765
No 226
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.27 E-value=0.015 Score=49.69 Aligned_cols=36 Identities=25% Similarity=0.158 Sum_probs=27.3
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEee
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLA 67 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~ 67 (352)
...++.|+|++|+||||++..++..+.... ..+.+.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~-~~v~l~ 132 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKG-RRPLLV 132 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTT-CCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC-CeEEEe
Confidence 357888999999999999999998765443 334443
No 227
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.27 E-value=0.0037 Score=48.89 Aligned_cols=27 Identities=22% Similarity=0.331 Sum_probs=23.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcC
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLMSH 58 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~~~ 58 (352)
.+++.|.|++|+|||||+..+...+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 468899999999999999999987643
No 228
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.26 E-value=0.0081 Score=51.93 Aligned_cols=36 Identities=19% Similarity=0.180 Sum_probs=27.8
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEee
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLA 67 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~ 67 (352)
...++.|+|++|+||||++..++..+.... ..+.+.
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g-~kVlli 139 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELG-YKVLIA 139 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTT-CCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCC-CeEEEE
Confidence 467899999999999999999998776543 334443
No 229
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.26 E-value=0.0025 Score=51.19 Aligned_cols=25 Identities=24% Similarity=0.193 Sum_probs=22.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHh
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLM 56 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~ 56 (352)
..+|+|.|++|+||||+++.+...+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3679999999999999999998876
No 230
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.25 E-value=0.0023 Score=52.12 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=22.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
..|+|.|++|+||||+++.++..+.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5688999999999999999998764
No 231
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.24 E-value=0.0041 Score=52.16 Aligned_cols=108 Identities=13% Similarity=0.158 Sum_probs=55.6
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeecc--ccccCCCcHHHHHHHHHHHHhcccCCCccchhhhHHHH
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVR--ERCDKEGSVISLQKQLLSDLLMLADNSIRNVYDGVNMI 108 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (352)
...++.|+|+.|+|||||++.+.......+...+++..-. ........ +........ +...+...+
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~-----------~v~q~~~gl-~~~~l~~~l 91 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKS-----------IVNQREVGE-DTKSFADAL 91 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSS-----------EEEEEEBTT-TBSCHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcce-----------eeeHHHhCC-CHHHHHHHH
Confidence 3478999999999999999998876543322333332110 00000000 000000000 002233445
Q ss_pred HhhhCCceEEEEEeCCCChhhhhhhhCCCCCCCCCceEEEEeCch
Q 045677 109 GSRLRHKKVLLLIDDVADVEQLRGLFGKRDWFGLGSMIIITTRDE 153 (352)
Q Consensus 109 ~~~l~~~~~llvlDd~~~~~~~~~l~~~~~~~~~~~~iiitsr~~ 153 (352)
...+...+-++++|+..+.+....++... ..+..+++|+-+.
T Consensus 92 a~aL~~~p~illlDEp~D~~~~~~~l~~~---~~g~~vl~t~H~~ 133 (261)
T 2eyu_A 92 RAALREDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTN 133 (261)
T ss_dssp HHHHHHCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEECCS
T ss_pred HHHHhhCCCEEEeCCCCCHHHHHHHHHHH---ccCCEEEEEeCcc
Confidence 55555677799999997665544443321 2344566666543
No 232
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.23 E-value=0.0026 Score=55.00 Aligned_cols=26 Identities=19% Similarity=0.273 Sum_probs=22.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
.++++|.||.|+|||+|+..+++.+.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCC
Confidence 36899999999999999999997653
No 233
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.21 E-value=0.003 Score=52.72 Aligned_cols=26 Identities=27% Similarity=0.417 Sum_probs=23.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
..++.|.|++|+||||+++.++..+.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999999997764
No 234
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.19 E-value=0.0073 Score=48.56 Aligned_cols=29 Identities=14% Similarity=-0.172 Sum_probs=24.0
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcCC
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMSHE 59 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~~~ 59 (352)
...+.+++|+.|.||||.+...+.+....
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~~~ 55 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQFA 55 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 45788999999999999998888776444
No 235
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.19 E-value=0.0047 Score=52.95 Aligned_cols=28 Identities=29% Similarity=0.258 Sum_probs=24.1
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcC
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMSH 58 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~~ 58 (352)
...++.|+|+.|+||||+++.++..+..
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~ 126 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKN 126 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 4578999999999999999999877643
No 236
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.19 E-value=0.0033 Score=54.18 Aligned_cols=26 Identities=31% Similarity=0.313 Sum_probs=23.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
.++++|+|++|+|||||+..++..+.
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 36899999999999999999998754
No 237
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.18 E-value=0.091 Score=43.17 Aligned_cols=41 Identities=20% Similarity=0.108 Sum_probs=29.5
Q ss_pred cccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHh
Q 045677 11 LVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLM 56 (352)
Q Consensus 11 ~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~ 56 (352)
+-=|+.+.+.+..++.. + . ++|+|+.|+|||.++..++...
T Consensus 92 ~~l~~~Q~~ai~~~~~~---~-~-~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVD---K-R-GCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp CCCCHHHHHHHHHHTTT---S-E-EEEEESSSTTHHHHHHHHHHHS
T ss_pred CCcCHHHHHHHHHHHhC---C-C-EEEEeCCCCCHHHHHHHHHHHc
Confidence 44456666666666552 1 2 7899999999999998887765
No 238
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.18 E-value=0.0015 Score=52.94 Aligned_cols=25 Identities=32% Similarity=0.413 Sum_probs=22.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcC
Q 045677 34 TIGIWGMGGLGKTTLARVVYDLMSH 58 (352)
Q Consensus 34 ~v~I~G~~GiGKT~La~~~~~~~~~ 58 (352)
+|+|.|++|+||||+++.+...+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6889999999999999999987653
No 239
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.18 E-value=0.0037 Score=51.87 Aligned_cols=24 Identities=33% Similarity=0.223 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHH
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
..++.|.|++|+|||||++.++..
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~~ 53 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHH
Confidence 478999999999999999998843
No 240
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.17 E-value=0.0035 Score=54.34 Aligned_cols=25 Identities=32% Similarity=0.191 Sum_probs=22.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
.+|+|.|++|+|||||+..++..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 6899999999999999999998764
No 241
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.17 E-value=0.0042 Score=49.10 Aligned_cols=25 Identities=24% Similarity=0.064 Sum_probs=21.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
.+++|+|+.|+||||++.+++.+..
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~ 28 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYK 28 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5788999999999999988777653
No 242
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.15 E-value=0.003 Score=50.71 Aligned_cols=21 Identities=38% Similarity=0.585 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 045677 34 TIGIWGMGGLGKTTLARVVYD 54 (352)
Q Consensus 34 ~v~I~G~~GiGKT~La~~~~~ 54 (352)
.|.|+|++|+||||+++.++.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 588999999999999999987
No 243
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.15 E-value=0.0065 Score=49.29 Aligned_cols=28 Identities=14% Similarity=-0.032 Sum_probs=23.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcCCC
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLMSHEF 60 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~~~~~ 60 (352)
-.|++.|+||+||||++..++..+....
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G 34 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQG 34 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCC
Confidence 4488999999999999999988876553
No 244
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.15 E-value=0.0035 Score=54.05 Aligned_cols=28 Identities=36% Similarity=0.425 Sum_probs=24.2
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 30 NDVRTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 30 ~~~~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
....++.|.|++|+|||||++.+...+.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 4468999999999999999999887654
No 245
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.14 E-value=0.0042 Score=51.60 Aligned_cols=26 Identities=27% Similarity=0.404 Sum_probs=22.7
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHh
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLM 56 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~ 56 (352)
...++.|.|+.|+|||||++.++..+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34789999999999999999988765
No 246
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.12 E-value=0.0035 Score=51.42 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=22.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
.+++|.|++|+||||+++.++..+.
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999988764
No 247
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.10 E-value=0.0037 Score=50.30 Aligned_cols=22 Identities=41% Similarity=0.527 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHH
Q 045677 33 RTIGIWGMGGLGKTTLARVVYD 54 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~ 54 (352)
.++.|+|++|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999875
No 248
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.08 E-value=0.0041 Score=50.86 Aligned_cols=24 Identities=42% Similarity=0.486 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 34 TIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 34 ~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
.++|.|++|+||||+++.++..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999988763
No 249
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.07 E-value=0.0039 Score=51.73 Aligned_cols=26 Identities=31% Similarity=0.196 Sum_probs=22.3
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHh
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLM 56 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~ 56 (352)
...++.|.|++|+|||+|+.+++...
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~ 54 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKG 54 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34789999999999999999987653
No 250
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=96.05 E-value=0.0061 Score=56.03 Aligned_cols=50 Identities=8% Similarity=-0.030 Sum_probs=36.5
Q ss_pred cCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcC
Q 045677 9 KELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSH 58 (352)
Q Consensus 9 ~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~ 58 (352)
+..+.|..-.+.+.+...........+++.|.+|+||||+++.++..+..
T Consensus 372 P~~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 372 PEWFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CTTTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred CccccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 34556655556666655322334478999999999999999999999875
No 251
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.04 E-value=0.023 Score=51.02 Aligned_cols=29 Identities=28% Similarity=0.194 Sum_probs=25.0
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcCC
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMSHE 59 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~~~ 59 (352)
...++.|+|++|+||||++..++..+...
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~ 125 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK 125 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 35788899999999999999999887655
No 252
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.03 E-value=0.0066 Score=55.51 Aligned_cols=40 Identities=18% Similarity=0.224 Sum_probs=28.8
Q ss_pred HHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCc
Q 045677 19 EKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFD 61 (352)
Q Consensus 19 ~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~ 61 (352)
..+...+..+. +.++|.|++|+|||+++..++..+.....
T Consensus 35 ~~~~~~i~~~~---~~~li~G~aGTGKT~ll~~~~~~l~~~~~ 74 (459)
T 3upu_A 35 NIVMKAIKEKK---HHVTINGPAGTGATTLTKFIIEALISTGE 74 (459)
T ss_dssp HHHHHHHHSSS---CEEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCC---CEEEEEeCCCCCHHHHHHHHHHHHHhcCC
Confidence 34444555322 48899999999999999999988755433
No 253
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.01 E-value=0.013 Score=47.71 Aligned_cols=29 Identities=28% Similarity=0.369 Sum_probs=25.6
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHhcC
Q 045677 30 NDVRTIGIWGMGGLGKTTLARVVYDLMSH 58 (352)
Q Consensus 30 ~~~~~v~I~G~~GiGKT~La~~~~~~~~~ 58 (352)
....+|+|.|+.|+||||+++.+.+.+..
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 34688999999999999999999998765
No 254
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.01 E-value=0.0052 Score=52.60 Aligned_cols=28 Identities=21% Similarity=0.155 Sum_probs=24.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcCC
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLMSHE 59 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~~~~ 59 (352)
..++.|.|++|+|||||+..++..+...
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~~ 62 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGTA 62 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 3689999999999999999998876543
No 255
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.00 E-value=0.0086 Score=49.13 Aligned_cols=28 Identities=32% Similarity=0.319 Sum_probs=25.1
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcC
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMSH 58 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~~ 58 (352)
...+++|.|++|+||||+++.+...+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4578999999999999999999998765
No 256
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.00 E-value=0.0024 Score=52.49 Aligned_cols=25 Identities=24% Similarity=0.182 Sum_probs=16.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHH-HHh
Q 045677 32 VRTIGIWGMGGLGKTTLARVVY-DLM 56 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~-~~~ 56 (352)
..++.|+|++|+|||||++.+. ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4689999999999999999988 553
No 257
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.99 E-value=0.0051 Score=49.97 Aligned_cols=23 Identities=30% Similarity=0.329 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHH
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYD 54 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~ 54 (352)
..+|+|.|++|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999875
No 258
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.95 E-value=0.0068 Score=53.19 Aligned_cols=28 Identities=29% Similarity=0.258 Sum_probs=24.2
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcC
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMSH 58 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~~ 58 (352)
...++.|+|+.|+||||++..++..+..
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~ 183 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKN 183 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccc
Confidence 4578999999999999999999887643
No 259
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.95 E-value=0.0048 Score=50.02 Aligned_cols=22 Identities=27% Similarity=0.279 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 045677 35 IGIWGMGGLGKTTLARVVYDLM 56 (352)
Q Consensus 35 v~I~G~~GiGKT~La~~~~~~~ 56 (352)
++|.|++|+||||+++.++..+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999876
No 260
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.94 E-value=0.0053 Score=49.35 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 34 TIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 34 ~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
++.|.|++|+||||+++.++..+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 789999999999999999988764
No 261
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.94 E-value=0.0034 Score=51.75 Aligned_cols=23 Identities=26% Similarity=0.366 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHH
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYD 54 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~ 54 (352)
..++.|.|+.|+|||||++.+.-
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 36899999999999999998775
No 262
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.93 E-value=0.011 Score=50.84 Aligned_cols=28 Identities=39% Similarity=0.395 Sum_probs=24.1
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 30 NDVRTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 30 ~~~~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
....++.|.|+.|+|||||++.+...+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3457899999999999999999887665
No 263
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.92 E-value=0.0083 Score=53.05 Aligned_cols=27 Identities=33% Similarity=0.224 Sum_probs=23.3
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHh
Q 045677 30 NDVRTIGIWGMGGLGKTTLARVVYDLM 56 (352)
Q Consensus 30 ~~~~~v~I~G~~GiGKT~La~~~~~~~ 56 (352)
.....+.|+|++|+|||||++.++...
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 345789999999999999999998754
No 264
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.92 E-value=0.0035 Score=52.14 Aligned_cols=25 Identities=32% Similarity=0.533 Sum_probs=22.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
..++|+|++|+||||+++.++..+.
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5799999999999999999998765
No 265
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=95.92 E-value=0.011 Score=56.43 Aligned_cols=47 Identities=21% Similarity=0.106 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEee
Q 045677 16 SRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLA 67 (352)
Q Consensus 16 ~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~ 67 (352)
+..+.+...|... .+.+|+||||+|||+.+.++...+-... ..+.++
T Consensus 193 ~Q~~AV~~al~~~----~~~lI~GPPGTGKT~ti~~~I~~l~~~~-~~ILv~ 239 (646)
T 4b3f_X 193 SQKEAVLFALSQK----ELAIIHGPPGTGKTTTVVEIILQAVKQG-LKVLCC 239 (646)
T ss_dssp HHHHHHHHHHHCS----SEEEEECCTTSCHHHHHHHHHHHHHHTT-CCEEEE
T ss_pred HHHHHHHHHhcCC----CceEEECCCCCCHHHHHHHHHHHHHhCC-CeEEEE
Confidence 4455666666522 4788999999999987777666543332 244444
No 266
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.90 E-value=0.056 Score=44.32 Aligned_cols=22 Identities=32% Similarity=0.259 Sum_probs=18.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHH
Q 045677 33 RTIGIWGMGGLGKTTLARVVYD 54 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~ 54 (352)
+.++|.|+.|+|||+++..+.-
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHHh
Confidence 6789999999999987766543
No 267
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.90 E-value=0.0097 Score=49.76 Aligned_cols=27 Identities=26% Similarity=0.260 Sum_probs=24.1
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
...++++.|.+|+||||++..++..+.
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 457888999999999999999998876
No 268
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.88 E-value=0.0054 Score=54.33 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=22.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
++++|.||+|+|||+|+..++..+.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 6889999999999999999998764
No 269
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.87 E-value=0.0046 Score=49.07 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 34 TIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 34 ~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
.+.|+|+.|+|||||++.++..+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 578999999999999999887764
No 270
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.86 E-value=0.02 Score=51.41 Aligned_cols=29 Identities=21% Similarity=0.124 Sum_probs=24.8
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcCC
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMSHE 59 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~~~ 59 (352)
...+++|+|+.|+|||||++.++..+...
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~~~ 194 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELNSS 194 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHCCT
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcCCC
Confidence 34789999999999999999998876544
No 271
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.86 E-value=0.0054 Score=52.59 Aligned_cols=23 Identities=35% Similarity=0.338 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
.+++|.|++|+||||+++.+...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999874
No 272
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.86 E-value=0.007 Score=48.13 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=22.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHh
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLM 56 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~ 56 (352)
..+|.|+|..|+||||+++.+...+
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 5678999999999999999998764
No 273
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.85 E-value=0.0084 Score=50.81 Aligned_cols=27 Identities=22% Similarity=0.199 Sum_probs=23.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcC
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLMSH 58 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~~~ 58 (352)
..++.|+|++|+|||||+..++..+..
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~~ 56 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIAG 56 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 368999999999999999999876543
No 274
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.85 E-value=0.0029 Score=49.32 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=22.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcC
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLMSH 58 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~~~ 58 (352)
+.+.|+|++|+|||||+..+...+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 47899999999999999999877654
No 275
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.82 E-value=0.01 Score=62.05 Aligned_cols=85 Identities=19% Similarity=0.178 Sum_probs=49.3
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHHHHHHHHhcccC----CCccchhhhHH
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQKQLLSDLLMLAD----NSIRNVYDGVN 106 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----~~~~~~~~~~~ 106 (352)
...++.|+|++|+|||+|+.+++...........|+. ... ... .+. +..+..... ....+.++...
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis-~E~---s~~---~~~---a~~lGvd~~~L~i~~~~~~e~~l~ 451 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID-AEH---ALD---PIY---ARKLGVDIDNLLCSQPDTGEQALE 451 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC-TTS---CCC---HHH---HHHTTCCGGGCEEECCSSHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEE-ccC---chH---HHH---HHHcCCCHHHeEEcCCCCHHHHHH
Confidence 4578999999999999999999988665555556654 211 111 111 222211100 11234445555
Q ss_pred HHHhhh-CCceEEEEEeCCC
Q 045677 107 MIGSRL-RHKKVLLLIDDVA 125 (352)
Q Consensus 107 ~~~~~l-~~~~~llvlDd~~ 125 (352)
.+.... ....-+||+|.+.
T Consensus 452 ~l~~lv~~~~~~lVVIDSL~ 471 (1706)
T 3cmw_A 452 ICDALARSGAVDVIVVDSVA 471 (1706)
T ss_dssp HHHHHHHHTCCSEEEESCST
T ss_pred HHHHHHHhcCCCEEEECCHH
Confidence 554433 3456699999983
No 276
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=95.82 E-value=0.033 Score=50.57 Aligned_cols=35 Identities=29% Similarity=0.354 Sum_probs=26.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcC-CCcceeEe
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLMSH-EFDGSSFL 66 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~~~-~~~~~~~~ 66 (352)
.+-+.|.|.+|+|||+|+.+++....+ +.+..+|.
T Consensus 165 Gqr~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~ 200 (498)
T 1fx0_B 165 GGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFG 200 (498)
T ss_dssp TCCEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEE
T ss_pred CCeEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEE
Confidence 355789999999999999999988643 33444443
No 277
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.81 E-value=0.0057 Score=51.93 Aligned_cols=24 Identities=25% Similarity=0.573 Sum_probs=21.3
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHH
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYD 54 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~ 54 (352)
...+|.|+|++|+||||+++.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999983
No 278
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.81 E-value=0.0029 Score=53.99 Aligned_cols=27 Identities=19% Similarity=0.336 Sum_probs=20.4
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
...+|.|.|++|+||||+++.+...+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 346899999999999999999988654
No 279
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.80 E-value=0.0053 Score=50.75 Aligned_cols=23 Identities=17% Similarity=0.322 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
.++.|.|+.|+|||||++.++--
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 68899999999999999998753
No 280
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.80 E-value=0.0059 Score=47.15 Aligned_cols=23 Identities=26% Similarity=0.328 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
+-|+|.|++|+||||+|..+..+
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 67899999999999999999874
No 281
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.79 E-value=0.005 Score=52.68 Aligned_cols=26 Identities=15% Similarity=0.304 Sum_probs=22.9
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHh
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLM 56 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~ 56 (352)
...++.|+|++|+|||||++.+..-+
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 44789999999999999999988765
No 282
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=95.79 E-value=0.0028 Score=59.79 Aligned_cols=51 Identities=20% Similarity=0.199 Sum_probs=35.3
Q ss_pred CCcCcccccHHHHHHHHHHhcCCC---------CeEEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 7 IPKELVGMESRLEKLKFLMCTGSN---------DVRTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 7 ~~~~~vGR~~~l~~l~~~l~~~~~---------~~~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
..+.++|.+...+.+...+..+.. ....++++|++|+|||+||+.++....
T Consensus 293 l~~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~ 352 (595)
T 3f9v_A 293 IAPSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAP 352 (595)
T ss_dssp TSSTTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCS
T ss_pred hcchhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCC
Confidence 346788998766666555542210 001589999999999999999886653
No 283
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.79 E-value=0.0049 Score=55.52 Aligned_cols=27 Identities=19% Similarity=0.190 Sum_probs=23.4
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHh
Q 045677 30 NDVRTIGIWGMGGLGKTTLARVVYDLM 56 (352)
Q Consensus 30 ~~~~~v~I~G~~GiGKT~La~~~~~~~ 56 (352)
....+|+|+|++|+||||+++.++..+
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 346889999999999999999988764
No 284
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.79 E-value=0.0081 Score=54.73 Aligned_cols=29 Identities=24% Similarity=0.273 Sum_probs=24.8
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcCC
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMSHE 59 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~~~ 59 (352)
...+++|+|++|+|||||++.++..+...
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~ 320 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQ 320 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhc
Confidence 45799999999999999999998776543
No 285
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=95.78 E-value=0.0012 Score=57.80 Aligned_cols=38 Identities=18% Similarity=0.074 Sum_probs=27.1
Q ss_pred HHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcC
Q 045677 20 KLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSH 58 (352)
Q Consensus 20 ~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~ 58 (352)
...+.+..- .+.+-+.|.|++|+|||+|+.++++....
T Consensus 164 raID~l~Pi-grGQR~lIfg~~g~GKT~Ll~~Ia~~i~~ 201 (427)
T 3l0o_A 164 RLIDLFAPI-GKGQRGMIVAPPKAGKTTILKEIANGIAE 201 (427)
T ss_dssp HHHHHHSCC-BTTCEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred hhhhhcccc-cCCceEEEecCCCCChhHHHHHHHHHHhh
Confidence 344445542 23356789999999999999999887643
No 286
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.78 E-value=0.012 Score=47.70 Aligned_cols=28 Identities=18% Similarity=0.167 Sum_probs=25.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcCC
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLMSHE 59 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~~~~ 59 (352)
..+|+|.|+.|+||||++..+...+...
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~ 33 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRER 33 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 4789999999999999999999988655
No 287
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.77 E-value=0.0044 Score=51.15 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHh
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLM 56 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~ 56 (352)
..++.|.|+.|+|||||++.++--.
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3689999999999999999887543
No 288
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.76 E-value=0.0076 Score=46.43 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHH
Q 045677 33 RTIGIWGMGGLGKTTLARVVYD 54 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~ 54 (352)
..++|.|++|+|||||++.+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 5688999999999999999875
No 289
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.75 E-value=0.0046 Score=50.59 Aligned_cols=22 Identities=32% Similarity=0.401 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHH
Q 045677 33 RTIGIWGMGGLGKTTLARVVYD 54 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~ 54 (352)
.++.|.|+.|+|||||++.++-
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 6889999999999999998774
No 290
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.72 E-value=0.0056 Score=50.77 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHH
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYD 54 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~ 54 (352)
..++.|.|+.|+|||||++.++-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 47899999999999999999875
No 291
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.71 E-value=0.0046 Score=49.89 Aligned_cols=23 Identities=30% Similarity=0.117 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
.++.|.|+.|+|||||++.++--
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 57899999999999999988754
No 292
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=95.71 E-value=0.027 Score=44.94 Aligned_cols=33 Identities=18% Similarity=0.220 Sum_probs=26.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEe
Q 045677 34 TIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFL 66 (352)
Q Consensus 34 ~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~ 66 (352)
+|+|-|.-|+||||.++.+++.+.......++.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t 34 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 578899999999999999999887664444443
No 293
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.70 E-value=0.012 Score=62.32 Aligned_cols=84 Identities=18% Similarity=0.155 Sum_probs=49.2
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHHHHHHHHhcccC----CCccchhhhHH
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQKQLLSDLLMLAD----NSIRNVYDGVN 106 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----~~~~~~~~~~~ 106 (352)
...++.|+|++|+|||+|+.+++...........|+. ... .. ..+. +..+..... ....+..++..
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis-~E~---s~---~~~~---a~~lGvd~~~L~I~~~~~~e~il~ 451 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID-AEH---AL---DPIY---ARKLGVDIDNLLCSQPDTGEQALE 451 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEC-TTS---CC---CHHH---HHHTTCCTTTCEEECCSSHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE-cCC---CH---HHHH---HHHcCCCHHHeEEeCCCCHHHHHH
Confidence 3578999999999999999999988766544555554 211 11 1111 222221100 01234455555
Q ss_pred HHHhhh-CCceEEEEEeCC
Q 045677 107 MIGSRL-RHKKVLLLIDDV 124 (352)
Q Consensus 107 ~~~~~l-~~~~~llvlDd~ 124 (352)
.+.... ....-+||+|.+
T Consensus 452 ~~~~lv~~~~~~lIVIDSL 470 (2050)
T 3cmu_A 452 ICDALARSGAVDVIVVDSV 470 (2050)
T ss_dssp HHHHHHHHTCCSEEEESCG
T ss_pred HHHHHHHhcCCcEEEECCH
Confidence 554333 345679999998
No 294
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=95.68 E-value=0.033 Score=61.03 Aligned_cols=143 Identities=12% Similarity=0.064 Sum_probs=0.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHHhhh
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQKQLLSDLLMLADNSIRNVYDGVNMIGSRL 112 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 112 (352)
+.++++||+|+|||++|+.+.... ..+....... ....+.......+...+
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~-~~~~~~~inf----------------------------sa~ts~~~~~~~i~~~~ 1318 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNS-SLYDVVGINF----------------------------SKDTTTEHILSALHRHT 1318 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC-SSCEEEEEEC----------------------------CTTCCHHHHHHHHHHHB
T ss_pred CeEEEECCCCCCHHHHHHHHHhcC-CCCceEEEEe----------------------------ecCCCHHHHHHHHHHHh
Q ss_pred ---------------CCceEEEEEeCC-------CChhhhhhhhCCCCCCCC-------------CceEEEEeCchh---
Q 045677 113 ---------------RHKKVLLLIDDV-------ADVEQLRGLFGKRDWFGL-------------GSMIIITTRDEH--- 154 (352)
Q Consensus 113 ---------------~~~~~llvlDd~-------~~~~~~~~l~~~~~~~~~-------------~~~iiitsr~~~--- 154 (352)
.+++.++.+||+ +......++++.+.+.+. +..+|.++-...
T Consensus 1319 ~~~~~~~g~~~~P~~~gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gG 1398 (2695)
T 4akg_A 1319 NYVTTSKGLTLLPKSDIKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPG 1398 (2695)
T ss_dssp CCEEETTTEEEEEBSSSSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTT
T ss_pred hhccccCCccccCCCCCceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCC
Q ss_pred ----HhhhcCcccEEecCCCCHhHHHHHHHhhhcCCCCCchhHHHHHHHHHHHc
Q 045677 155 ----LLKLHRVEEVYKLEALNFDEAFRLFCLKAFDTYKPLEEYLELAKCFVKYA 204 (352)
Q Consensus 155 ----~~~~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~ 204 (352)
.....+....+.++..+.++-..++...........+........++..+
T Consensus 1399 R~~l~~rllRrf~vi~i~~P~~~~l~~I~~~il~~~l~~~~~v~~~~~~lv~at 1452 (2695)
T 4akg_A 1399 RIPMSERFTRHAAILYLGYPSGKSLSQIYEIYYKAIFKLVPEFRSYTEPFARAS 1452 (2695)
T ss_dssp CCCCCHHHHTTEEEEECCCCTTTHHHHHHHHHHHHHTTSSGGGGGGHHHHHHHH
T ss_pred CccCChhhhheeeEEEeCCCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
No 295
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.67 E-value=0.0083 Score=47.43 Aligned_cols=25 Identities=28% Similarity=0.159 Sum_probs=21.3
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHH
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
....|+|.|++|+|||||+..+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3457889999999999999998764
No 296
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.67 E-value=0.005 Score=51.66 Aligned_cols=24 Identities=38% Similarity=0.468 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHH
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
..++.|.|+.|+|||||++.++--
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999988753
No 297
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.66 E-value=0.0082 Score=45.74 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
+-|+|.|.+|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45889999999999999998764
No 298
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.66 E-value=0.012 Score=53.35 Aligned_cols=36 Identities=22% Similarity=0.069 Sum_probs=27.8
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEe
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFL 66 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~ 66 (352)
...++.|.|++|+|||+|+.+++.........+.|+
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~f 231 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLH 231 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEE
Confidence 457899999999999999999998865443334444
No 299
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.60 E-value=0.0056 Score=48.19 Aligned_cols=21 Identities=38% Similarity=0.450 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 045677 34 TIGIWGMGGLGKTTLARVVYD 54 (352)
Q Consensus 34 ~v~I~G~~GiGKT~La~~~~~ 54 (352)
-|+|.|++|+|||||++.+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999998875
No 300
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=95.60 E-value=0.015 Score=52.75 Aligned_cols=25 Identities=28% Similarity=0.170 Sum_probs=19.2
Q ss_pred eEEEEEEcCCCCcHHHHHH-HHHHHh
Q 045677 32 VRTIGIWGMGGLGKTTLAR-VVYDLM 56 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~-~~~~~~ 56 (352)
.+-+.|.|.+|+|||+|+. .+++..
T Consensus 162 GQR~~Ifg~~g~GKT~Lal~~I~~~~ 187 (502)
T 2qe7_A 162 GQRELIIGDRQTGKTTIAIDTIINQK 187 (502)
T ss_dssp TCBCEEEECSSSCHHHHHHHHHHGGG
T ss_pred CCEEEEECCCCCCchHHHHHHHHHhh
Confidence 3557899999999999964 555554
No 301
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.59 E-value=0.0067 Score=51.03 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHH
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
..++.|.|+.|+|||||++.++--
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 368899999999999999988764
No 302
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=95.59 E-value=0.016 Score=48.85 Aligned_cols=31 Identities=23% Similarity=0.340 Sum_probs=24.0
Q ss_pred HhcCCCCeEEEEEEcCCCCcHHHHHHHHHHH
Q 045677 25 MCTGSNDVRTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 25 l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
+.........|+|.|.+|+|||||++.+...
T Consensus 32 ~~~~~~~~~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 32 LKQEDVNSLTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp HHHTTCCEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred HhhcCCCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 4433344567889999999999999998854
No 303
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.58 E-value=0.026 Score=52.54 Aligned_cols=36 Identities=19% Similarity=0.141 Sum_probs=26.8
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEe
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFL 66 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~ 66 (352)
...++.|.|++|+|||||+..++..........+++
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~ 315 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENACANKERAILF 315 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 346899999999999999999987755433233444
No 304
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.58 E-value=0.0075 Score=47.81 Aligned_cols=24 Identities=21% Similarity=0.268 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHH
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
.-.++|.|++|+|||||++.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 356889999999999999998865
No 305
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=95.58 E-value=0.017 Score=53.76 Aligned_cols=50 Identities=16% Similarity=0.131 Sum_probs=35.0
Q ss_pred cCcccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcC
Q 045677 9 KELVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSH 58 (352)
Q Consensus 9 ~~~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~ 58 (352)
+..+.|..-.+.+.+..........+|+++|.+|+||||+++.+...+..
T Consensus 349 p~~~~r~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~~ 398 (546)
T 2gks_A 349 PEWFTRPEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQA 398 (546)
T ss_dssp CTTTSCHHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CccccchhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhhh
Confidence 34455555555565555322334578999999999999999999987654
No 306
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.58 E-value=0.0057 Score=51.30 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHH
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
..++.|.|+.|+|||||++.++--
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcC
Confidence 468899999999999999988753
No 307
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.57 E-value=0.006 Score=51.49 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHH
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYD 54 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~ 54 (352)
..++.|.|+.|+|||||++.++-
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 36889999999999999998875
No 308
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.57 E-value=0.012 Score=52.43 Aligned_cols=26 Identities=15% Similarity=0.116 Sum_probs=22.0
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHh
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLM 56 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~ 56 (352)
...++.|+|++|+|||||+.+++-..
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~ 202 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTC 202 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHh
Confidence 34789999999999999999887543
No 309
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=95.57 E-value=0.066 Score=48.10 Aligned_cols=25 Identities=20% Similarity=0.231 Sum_probs=21.6
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHH
Q 045677 30 NDVRTIGIWGMGGLGKTTLARVVYD 54 (352)
Q Consensus 30 ~~~~~v~I~G~~GiGKT~La~~~~~ 54 (352)
...++.+|.|++|+|||+++.+.+.
T Consensus 159 ~~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 159 SSAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred ccccEEEEEcCCCCCHHHHHHHHhc
Confidence 4578999999999999999988763
No 310
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.56 E-value=0.0076 Score=50.17 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
.++.|.|+.|+|||||++.++--
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 68899999999999999998863
No 311
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.55 E-value=0.0085 Score=49.52 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=23.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
+.+|+|.|..|+||||+++.++..+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 36899999999999999999998864
No 312
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.55 E-value=0.0059 Score=51.15 Aligned_cols=25 Identities=32% Similarity=0.559 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHh
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLM 56 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~ 56 (352)
..++.|.|+.|+|||||++.++--.
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC
Confidence 3689999999999999999987543
No 313
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.55 E-value=0.011 Score=55.18 Aligned_cols=49 Identities=22% Similarity=0.194 Sum_probs=32.1
Q ss_pred cccccHHHHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcCC
Q 045677 11 LVGMESRLEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDLMSHE 59 (352)
Q Consensus 11 ~vGR~~~l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~ 59 (352)
.+.+....+.+.......-....+++|+|++|+|||||++.++..+...
T Consensus 348 ~f~~peV~~vLR~~~~~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~ 396 (552)
T 3cr8_A 348 WYSFPEVLAELHRQTPPRERQGFTVFFTGLSGAGKSTLARALAARLMEM 396 (552)
T ss_dssp TTSCHHHHHHHHHHSCCGGGSCEEEEEEESSCHHHHHHHHHHHHHHHTT
T ss_pred cccccchhhhhhhhcccccccceEEEEECCCCChHHHHHHHHHHhhccc
Confidence 3444444444444331111234789999999999999999999887643
No 314
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=95.54 E-value=0.0067 Score=54.30 Aligned_cols=24 Identities=21% Similarity=0.387 Sum_probs=21.3
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHH
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYD 54 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~ 54 (352)
...++.|.|++|+|||||++.+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 346899999999999999999886
No 315
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=95.54 E-value=0.0078 Score=48.02 Aligned_cols=23 Identities=22% Similarity=0.254 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
..++|.|++|+|||||++.+...
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 45889999999999999998864
No 316
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.53 E-value=0.02 Score=49.88 Aligned_cols=28 Identities=29% Similarity=0.488 Sum_probs=23.8
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 30 NDVRTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 30 ~~~~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
....++.|.|++|+|||||++.+...+.
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~ 80 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLT 80 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhh
Confidence 4458899999999999999999886653
No 317
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.53 E-value=0.022 Score=46.83 Aligned_cols=28 Identities=32% Similarity=0.483 Sum_probs=24.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcCC
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLMSHE 59 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~~~~ 59 (352)
..+|+|.|++|+||||++..+...+...
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~ 54 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQN 54 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 4789999999999999999999887654
No 318
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=95.52 E-value=0.024 Score=45.82 Aligned_cols=28 Identities=36% Similarity=0.380 Sum_probs=24.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcCCC
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLMSHEF 60 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~~~~~ 60 (352)
.+|+|.|+.|+||||+++.+...+....
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~ 31 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQLG 31 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 6899999999999999999998876543
No 319
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.51 E-value=0.0067 Score=50.15 Aligned_cols=22 Identities=27% Similarity=0.438 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHH
Q 045677 33 RTIGIWGMGGLGKTTLARVVYD 54 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~ 54 (352)
.++.|.|+.|+|||||++.++-
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 6889999999999999998875
No 320
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.50 E-value=0.012 Score=46.11 Aligned_cols=26 Identities=27% Similarity=0.328 Sum_probs=21.4
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHH
Q 045677 30 NDVRTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 30 ~~~~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
....-|+|.|.+|+|||||+..+...
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 34567889999999999999887643
No 321
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.50 E-value=0.0067 Score=50.73 Aligned_cols=24 Identities=33% Similarity=0.372 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHH
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
..++.|.|+.|+|||||++.++--
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999988753
No 322
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=95.50 E-value=0.0063 Score=51.32 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHH
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
..++.|.|+.|+|||||++.++--
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999988753
No 323
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.50 E-value=0.0063 Score=50.82 Aligned_cols=24 Identities=38% Similarity=0.562 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHH
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
..++.|.|+.|+|||||++.++--
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 368999999999999999988753
No 324
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.50 E-value=0.0068 Score=50.36 Aligned_cols=23 Identities=39% Similarity=0.699 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
.++.|.|+.|+|||||++.++--
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 68899999999999999988653
No 325
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=95.48 E-value=0.043 Score=52.15 Aligned_cols=35 Identities=20% Similarity=0.222 Sum_probs=25.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEee
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLA 67 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~ 67 (352)
++++|+|++|+|||+++..++..+.......+.++
T Consensus 196 ~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~ 230 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVC 230 (624)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEE
T ss_pred CCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 47889999999999999888877654333344443
No 326
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.48 E-value=0.0057 Score=49.58 Aligned_cols=23 Identities=30% Similarity=0.573 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
.++.|.|+.|+|||||++.++--
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 57889999999999999988753
No 327
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.47 E-value=0.0068 Score=47.42 Aligned_cols=21 Identities=24% Similarity=0.145 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 045677 35 IGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 35 v~I~G~~GiGKT~La~~~~~~ 55 (352)
++|+|.+|+|||++|.+++..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 689999999999999999855
No 328
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.47 E-value=0.0069 Score=50.89 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHH
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYD 54 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~ 54 (352)
..++.|.|+.|+|||||++.++-
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 36889999999999999998875
No 329
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=95.47 E-value=0.021 Score=49.88 Aligned_cols=29 Identities=24% Similarity=0.378 Sum_probs=24.4
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHhcC
Q 045677 30 NDVRTIGIWGMGGLGKTTLARVVYDLMSH 58 (352)
Q Consensus 30 ~~~~~v~I~G~~GiGKT~La~~~~~~~~~ 58 (352)
.+..++.|.|++|+|||||+..++..+..
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~ 82 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIR 82 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 45688999999999999999999876543
No 330
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=95.46 E-value=0.017 Score=46.42 Aligned_cols=28 Identities=32% Similarity=0.459 Sum_probs=24.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcCCC
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLMSHEF 60 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~~~~~ 60 (352)
++|+|-|.-|+||||+++.+...+.+.+
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~ 30 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDY 30 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTS
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCC
Confidence 6899999999999999999999886543
No 331
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=95.46 E-value=0.012 Score=50.39 Aligned_cols=31 Identities=16% Similarity=0.173 Sum_probs=24.1
Q ss_pred HHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHH
Q 045677 18 LEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVY 53 (352)
Q Consensus 18 l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~ 53 (352)
+++|.+.+. ..++.|.|++|+|||||++.+.
T Consensus 156 i~~L~~~l~-----G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 156 IDELVDYLE-----GFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp HHHHHHHTT-----TCEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHhhcc-----CcEEEEECCCCCCHHHHHHHHH
Confidence 444544443 2578899999999999999988
No 332
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=95.46 E-value=0.018 Score=50.02 Aligned_cols=37 Identities=27% Similarity=0.271 Sum_probs=29.1
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEe
Q 045677 30 NDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFL 66 (352)
Q Consensus 30 ~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~ 66 (352)
...+++++.|.||+||||++..++..+.+.......+
T Consensus 14 ~~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vlli 50 (334)
T 3iqw_A 14 RSLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLL 50 (334)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEE
T ss_pred CCeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEE
Confidence 4468899999999999999999998887654434333
No 333
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.44 E-value=0.016 Score=60.71 Aligned_cols=84 Identities=18% Similarity=0.129 Sum_probs=54.6
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHHHHHHHHhcc----cCCCccchhhhHH
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQKQLLSDLLML----ADNSIRNVYDGVN 106 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~~~~~~~ 106 (352)
+.++|-|+||.|+||||||.+++...++......|+. ..+..+. .. +..++-. ....++..++.++
T Consensus 1430 rg~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~----~e~~~~~--~~----~~~~Gv~~~~l~~~~p~~~e~~l~ 1499 (1706)
T 3cmw_A 1430 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID----AEHALDP--IY----ARKLGVDIDNLLCSQPDTGEQALE 1499 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC----TTSCCCH--HH----HHHTTCCGGGCEEECCSSHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEe----cCCCCCH--HH----HHHcCCCHHHeEEeCCCcHHHHHH
Confidence 4589999999999999999999988777766677775 2211111 11 3332221 1122444566666
Q ss_pred HHHhhhC-CceEEEEEeCC
Q 045677 107 MIGSRLR-HKKVLLLIDDV 124 (352)
Q Consensus 107 ~~~~~l~-~~~~llvlDd~ 124 (352)
.+...++ +..-+||+|-+
T Consensus 1500 ~~~~~~~s~~~~~vvvDsv 1518 (1706)
T 3cmw_A 1500 ICDALARSGAVDVIVVDSV 1518 (1706)
T ss_dssp HHHHHHHHTCCSEEEESCS
T ss_pred HHHHHHHcCCCCEEEEccH
Confidence 6666664 56679999998
No 334
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.43 E-value=0.011 Score=46.36 Aligned_cols=24 Identities=21% Similarity=0.273 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHH
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
...|+|.|++|+|||||++.+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 356889999999999999998863
No 335
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=95.43 E-value=0.017 Score=50.57 Aligned_cols=38 Identities=24% Similarity=0.307 Sum_probs=29.2
Q ss_pred CCCeEEEEEEcCCCCcHHHHHHHHHHHhc--CCCcceeEe
Q 045677 29 SNDVRTIGIWGMGGLGKTTLARVVYDLMS--HEFDGSSFL 66 (352)
Q Consensus 29 ~~~~~~v~I~G~~GiGKT~La~~~~~~~~--~~~~~~~~~ 66 (352)
....+++++.|.||+||||++..++..+. ........+
T Consensus 15 ~~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vlli 54 (348)
T 3io3_A 15 HDSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLI 54 (348)
T ss_dssp CTTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEE
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 34568999999999999999999998877 544333333
No 336
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=95.43 E-value=0.0082 Score=50.59 Aligned_cols=23 Identities=35% Similarity=0.589 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 045677 34 TIGIWGMGGLGKTTLARVVYDLM 56 (352)
Q Consensus 34 ~v~I~G~~GiGKT~La~~~~~~~ 56 (352)
.+.|.|++|+|||||++.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999988653
No 337
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.41 E-value=0.016 Score=47.31 Aligned_cols=28 Identities=29% Similarity=0.334 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcCC
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLMSHE 59 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~~~~ 59 (352)
..+|+|.|+.|+||||+++.+++.+...
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQER 52 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 4789999999999999999999887654
No 338
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.41 E-value=0.013 Score=44.93 Aligned_cols=24 Identities=17% Similarity=0.274 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHH
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
.--|+|.|.+|+|||||+..+...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 345789999999999999998864
No 339
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.39 E-value=0.014 Score=51.74 Aligned_cols=108 Identities=12% Similarity=0.134 Sum_probs=55.5
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHHh
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQKQLLSDLLMLADNSIRNVYDGVNMIGS 110 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (352)
...++.|+|++|+||||+++.+...+.......+....- .. .... .. .+ .+....... .+...+...+..
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~-~~--e~~~-~~---~~--~~v~Q~~~g-~~~~~~~~~l~~ 204 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIED-PI--EYVF-KH---KK--SIVNQREVG-EDTKSFADALRA 204 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEES-SC--CSCC-CC---SS--SEEEEEEBT-TTBSCSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecc-cH--hhhh-cc---Cc--eEEEeeecC-CCHHHHHHHHHH
Confidence 347899999999999999999987654332223322210 00 0000 00 00 000000000 011233455666
Q ss_pred hhCCceEEEEEeCCCChhhhhhhhCCCCCCCCCceEEEEeC
Q 045677 111 RLRHKKVLLLIDDVADVEQLRGLFGKRDWFGLGSMIIITTR 151 (352)
Q Consensus 111 ~l~~~~~llvlDd~~~~~~~~~l~~~~~~~~~~~~iiitsr 151 (352)
.+...+-+|++|+..+.+.+...+... ..+..++.|+-
T Consensus 205 ~L~~~pd~illdE~~d~e~~~~~l~~~---~~g~~vi~t~H 242 (372)
T 2ewv_A 205 ALREDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLH 242 (372)
T ss_dssp HTTSCCSEEEESCCCSHHHHHHHHHHH---TTTCEEEECCC
T ss_pred HhhhCcCEEEECCCCCHHHHHHHHHHH---hcCCEEEEEEC
Confidence 666778899999997666554443322 22344555544
No 340
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=95.38 E-value=0.0078 Score=50.02 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHh
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLM 56 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~ 56 (352)
.++.|.|+.|+|||||++.++--.
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 578999999999999999887544
No 341
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=95.36 E-value=0.0075 Score=50.71 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHH
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYD 54 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~ 54 (352)
..++.|.|+.|+|||||++.++-
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 36889999999999999998775
No 342
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.36 E-value=0.0059 Score=55.12 Aligned_cols=28 Identities=29% Similarity=0.332 Sum_probs=24.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcCC
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLMSHE 59 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~~~~ 59 (352)
++++.|+|++|+||||++..++..+...
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~ 126 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKR 126 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4689999999999999999999876544
No 343
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.34 E-value=0.0097 Score=45.43 Aligned_cols=22 Identities=27% Similarity=0.495 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 045677 34 TIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 34 ~v~I~G~~GiGKT~La~~~~~~ 55 (352)
-|+|.|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998864
No 344
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.34 E-value=0.017 Score=50.61 Aligned_cols=27 Identities=22% Similarity=0.346 Sum_probs=23.5
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
....|.|+|++|+|||||++.+.....
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~ 99 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLT 99 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhh
Confidence 368899999999999999999987653
No 345
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=95.34 E-value=0.024 Score=49.73 Aligned_cols=32 Identities=25% Similarity=0.340 Sum_probs=26.6
Q ss_pred CCCeEEEEEEcCCCCcHHHHHHHHHHHhcCCC
Q 045677 29 SNDVRTIGIWGMGGLGKTTLARVVYDLMSHEF 60 (352)
Q Consensus 29 ~~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~ 60 (352)
.....++++.|.||+||||++..++..+.+..
T Consensus 23 ~~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G 54 (349)
T 3ug7_A 23 KDGTKYIMFGGKGGVGKTTMSAATGVYLAEKG 54 (349)
T ss_dssp SCSCEEEEEECSSSTTHHHHHHHHHHHHHHSS
T ss_pred cCCCEEEEEeCCCCccHHHHHHHHHHHHHHCC
Confidence 45568888999999999999999998876553
No 346
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=95.33 E-value=0.022 Score=47.75 Aligned_cols=36 Identities=17% Similarity=0.209 Sum_probs=26.1
Q ss_pred HHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHH
Q 045677 20 KLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 20 ~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
.+.+.+.........|+|.|.+|+|||||+..+...
T Consensus 24 ~~~~~~~~~~~~~~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 24 EFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp HHHHHHHHTTCCEEEEEEEECTTSSHHHHHHHHHTS
T ss_pred HHHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 333344433345567889999999999999998864
No 347
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=95.30 E-value=0.019 Score=48.21 Aligned_cols=36 Identities=22% Similarity=0.412 Sum_probs=26.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeec
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADV 69 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~ 69 (352)
+++.|.|.||+||||++..++..+.+... .+.+.++
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~-~VlliD~ 37 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGK-TIMVVGC 37 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTC-CEEEEEE
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCC-cEEEEcC
Confidence 46677899999999999999998876533 3333333
No 348
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.29 E-value=0.013 Score=48.29 Aligned_cols=27 Identities=26% Similarity=0.342 Sum_probs=23.2
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
....+.|.|++|+||||+++.++..+.
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 346799999999999999999987654
No 349
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=95.29 E-value=0.0086 Score=50.69 Aligned_cols=24 Identities=29% Similarity=0.465 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHH
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
..++.|.|+.|+|||||++.++--
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 367899999999999999988753
No 350
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.28 E-value=0.015 Score=45.00 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
.-|+|.|.+|+|||||++.+...
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 45889999999999999988753
No 351
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.28 E-value=0.0086 Score=49.92 Aligned_cols=23 Identities=26% Similarity=0.562 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
.++.|.|+.|+|||||++.++--
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999988754
No 352
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.27 E-value=0.011 Score=45.17 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
--|+|.|++|+|||||+..+...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 34889999999999999988764
No 353
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.27 E-value=0.011 Score=46.48 Aligned_cols=25 Identities=20% Similarity=0.367 Sum_probs=21.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
.+.+|+|+.|+|||||+..+..-+.
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHc
Confidence 3788999999999999999886543
No 354
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=95.27 E-value=0.0092 Score=52.25 Aligned_cols=23 Identities=39% Similarity=0.432 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHH
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYD 54 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~ 54 (352)
..++.|.||+|+|||||++.++-
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCchHHHHHHHHhc
Confidence 36889999999999999999875
No 355
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=95.25 E-value=0.022 Score=51.10 Aligned_cols=26 Identities=15% Similarity=0.239 Sum_probs=21.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcC
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLMSH 58 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~~~ 58 (352)
+-+.|.|.+|+|||+|+.++++....
T Consensus 152 Qr~~Ifgg~G~GKt~L~~~Ia~~~~~ 177 (465)
T 3vr4_D 152 QKLPVFSGSGLPHKELAAQIARQATV 177 (465)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBC
T ss_pred CEEEEeCCCCcChHHHHHHHHHHHHh
Confidence 44678999999999999998887654
No 356
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.24 E-value=0.012 Score=47.54 Aligned_cols=25 Identities=28% Similarity=0.159 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHH
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
....|+|.|++|+|||||+..+...
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4467889999999999999998865
No 357
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=95.24 E-value=0.15 Score=47.43 Aligned_cols=65 Identities=12% Similarity=0.229 Sum_probs=38.5
Q ss_pred eEEEEEeCCCChh-----hhhhhhCCCC--CCCCCceEEEEeCchh---Hhhh--cCcccEEecCCCCHhHHHHHHH
Q 045677 116 KVLLLIDDVADVE-----QLRGLFGKRD--WFGLGSMIIITTRDEH---LLKL--HRVEEVYKLEALNFDEAFRLFC 180 (352)
Q Consensus 116 ~~llvlDd~~~~~-----~~~~l~~~~~--~~~~~~~iiitsr~~~---~~~~--~~~~~~~~l~~l~~~e~~~ll~ 180 (352)
.++||+|++.+.- .+...+..+. -...|.++|++|.... +... ......+-+..-+..++..++-
T Consensus 344 ~ivvVIDE~~~L~~~~~~~~~~~L~~Iar~GRa~GIhLIlaTQRPs~d~I~~~Iran~~~RI~lrv~s~~Dsr~ILd 420 (574)
T 2iut_A 344 TIVVVVDEFADMMMIVGKKVEELIARIAQKARAAGIHLILATQRPSVDVITGLIKANIPTRIAFQVSSKIDSRTILD 420 (574)
T ss_dssp EEEEEESCCTTHHHHTCHHHHHHHHHHHHHCTTTTEEEEEEESCCCTTTSCHHHHHTCCEEEEECCSCHHHHHHHHS
T ss_pred cEEEEEeCHHHHhhhhhHHHHHHHHHHHHHHhhCCeEEEEEecCcccccccHHHHhhhccEEEEEcCCHHHHHHhcC
Confidence 4799999997542 2222221111 1246888888887643 1111 2344567777788888888774
No 358
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=95.22 E-value=0.037 Score=50.36 Aligned_cols=25 Identities=24% Similarity=0.226 Sum_probs=19.3
Q ss_pred EEEEEEcCCCCcHHHHH-HHHHHHhc
Q 045677 33 RTIGIWGMGGLGKTTLA-RVVYDLMS 57 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La-~~~~~~~~ 57 (352)
+-+.|.|.+|+|||+|| ..+++...
T Consensus 163 QR~~I~g~~g~GKT~Lal~~I~~q~~ 188 (510)
T 2ck3_A 163 QRELIIGDRQTGKTSIAIDTIINQKR 188 (510)
T ss_dssp CBCEEEESTTSSHHHHHHHHHHHTHH
T ss_pred CEEEEecCCCCCchHHHHHHHHHHHh
Confidence 55779999999999995 45555544
No 359
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=95.22 E-value=0.021 Score=53.47 Aligned_cols=28 Identities=25% Similarity=0.209 Sum_probs=24.5
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcC
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMSH 58 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~~ 58 (352)
...+|+|.|++|+||||+++.+...+..
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~ 422 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLNQ 422 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhcc
Confidence 4578999999999999999999988763
No 360
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.21 E-value=0.012 Score=45.29 Aligned_cols=23 Identities=26% Similarity=0.315 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
--|+|.|.+|+|||||+..+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 45889999999999999998854
No 361
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.21 E-value=0.013 Score=44.82 Aligned_cols=21 Identities=29% Similarity=0.200 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 045677 35 IGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 35 v~I~G~~GiGKT~La~~~~~~ 55 (352)
|+|.|.+|+|||+|+..+...
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999998764
No 362
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.21 E-value=0.013 Score=45.45 Aligned_cols=25 Identities=28% Similarity=0.258 Sum_probs=21.3
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHH
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
....|+|.|.+|+|||||+..+...
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4467889999999999999998753
No 363
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.19 E-value=0.012 Score=45.14 Aligned_cols=22 Identities=14% Similarity=0.261 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 045677 34 TIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 34 ~v~I~G~~GiGKT~La~~~~~~ 55 (352)
-|+|.|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998864
No 364
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.19 E-value=0.018 Score=44.75 Aligned_cols=26 Identities=23% Similarity=0.427 Sum_probs=22.0
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHH
Q 045677 30 NDVRTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 30 ~~~~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
....-|+|.|.+|+|||||+..+...
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 34466889999999999999998865
No 365
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.18 E-value=0.012 Score=44.95 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
.-|+|.|.+|+|||||+..+...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 45889999999999999998864
No 366
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.16 E-value=0.012 Score=45.56 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHH
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
..-|+|.|.+|+|||||+..+...
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 355889999999999999998754
No 367
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.15 E-value=0.013 Score=45.07 Aligned_cols=23 Identities=17% Similarity=0.306 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
--|+|.|.+|+|||||++.+...
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 45889999999999999998865
No 368
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.14 E-value=0.012 Score=45.21 Aligned_cols=23 Identities=26% Similarity=0.273 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
--|+|.|.+|+|||||+..+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 45789999999999999998753
No 369
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.13 E-value=0.012 Score=45.18 Aligned_cols=21 Identities=33% Similarity=0.457 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 045677 34 TIGIWGMGGLGKTTLARVVYD 54 (352)
Q Consensus 34 ~v~I~G~~GiGKT~La~~~~~ 54 (352)
-|+|.|.+|+|||||+..+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999998863
No 370
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.11 E-value=0.018 Score=44.82 Aligned_cols=25 Identities=28% Similarity=0.391 Sum_probs=21.3
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHH
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
...-|+|.|.+|+|||||+..+...
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3456889999999999999988764
No 371
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=95.11 E-value=0.01 Score=48.74 Aligned_cols=26 Identities=31% Similarity=0.150 Sum_probs=22.3
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHH
Q 045677 30 NDVRTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 30 ~~~~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
....++.|.|+.|+||||+++.+...
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34579999999999999999887754
No 372
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=95.11 E-value=0.012 Score=51.69 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHH
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYD 54 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~ 54 (352)
..++.|.|++|+|||||++.++-
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEEcCCCchHHHHHHHHHC
Confidence 36889999999999999999875
No 373
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.11 E-value=0.013 Score=46.07 Aligned_cols=25 Identities=24% Similarity=0.186 Sum_probs=20.9
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHH
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
..--|+|.|.+|+|||||+..+...
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3455889999999999999888764
No 374
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=95.10 E-value=0.013 Score=51.38 Aligned_cols=23 Identities=35% Similarity=0.599 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHH
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYD 54 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~ 54 (352)
..++.|.|++|+|||||++.++-
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 36889999999999999999875
No 375
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.10 E-value=0.014 Score=44.75 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
--|+|.|.+|+|||||++.+...
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 34789999999999999998864
No 376
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.09 E-value=0.012 Score=50.84 Aligned_cols=26 Identities=31% Similarity=0.349 Sum_probs=22.6
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHh
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLM 56 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~ 56 (352)
+.+++.|+|+.|+|||||++.+....
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 35789999999999999999988653
No 377
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.09 E-value=0.013 Score=46.10 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
--|+|.|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 45889999999999999999864
No 378
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=95.09 E-value=0.014 Score=45.29 Aligned_cols=23 Identities=22% Similarity=0.213 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
..|+|.|.+|+|||||++.+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45889999999999999998754
No 379
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.08 E-value=0.029 Score=44.00 Aligned_cols=34 Identities=21% Similarity=0.221 Sum_probs=25.0
Q ss_pred HHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHH
Q 045677 18 LEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYD 54 (352)
Q Consensus 18 l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~ 54 (352)
+..+.+++. ....-|+|.|.+|+|||||+..+..
T Consensus 5 ~~~~~~~~~---~~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 5 FTRIWRLFN---HQEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp HHHHHHHHT---TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred HHHHHHhcC---CCccEEEEECCCCCCHHHHHHHHhc
Confidence 344555333 3346788999999999999999884
No 380
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=95.08 E-value=0.012 Score=51.70 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHH
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYD 54 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~ 54 (352)
..++.|.|++|+|||||++.++-
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaG 51 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAG 51 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCchHHHHHHHHhc
Confidence 36889999999999999999875
No 381
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=95.08 E-value=0.015 Score=50.44 Aligned_cols=34 Identities=26% Similarity=0.265 Sum_probs=27.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeE
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSF 65 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~ 65 (352)
..++++.|.||+||||++..++..+.+.......
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLl 47 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMARSGKKTLV 47 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEE
Confidence 5788899999999999999999887665333333
No 382
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.08 E-value=0.011 Score=45.23 Aligned_cols=21 Identities=33% Similarity=0.570 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 045677 34 TIGIWGMGGLGKTTLARVVYD 54 (352)
Q Consensus 34 ~v~I~G~~GiGKT~La~~~~~ 54 (352)
-|+|.|.+|+|||||++.+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 378999999999999988753
No 383
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.07 E-value=0.011 Score=49.54 Aligned_cols=24 Identities=42% Similarity=0.584 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHh
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLM 56 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~ 56 (352)
.++.|.|+.|+|||||++.++--.
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 578999999999999999887543
No 384
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.06 E-value=0.012 Score=51.90 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHH
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYD 54 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~ 54 (352)
..++.|.||+|+|||||++.++-
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEEcCCCchHHHHHHHHHc
Confidence 36889999999999999999875
No 385
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.06 E-value=0.014 Score=46.11 Aligned_cols=25 Identities=16% Similarity=0.355 Sum_probs=21.3
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHH
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
....|+|.|.+|+|||||+..+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567889999999999999998753
No 386
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.05 E-value=0.0082 Score=51.48 Aligned_cols=23 Identities=30% Similarity=0.619 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHH
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYD 54 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~ 54 (352)
..++.|+|++|+|||||++.+..
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCEEEEECCCCchHHHHHHHHHc
Confidence 46899999999999999988765
No 387
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=95.04 E-value=0.013 Score=46.41 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=19.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHH
Q 045677 33 RTIGIWGMGGLGKTTLARVVYD 54 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~ 54 (352)
--|+|.|.+|+|||||+..+..
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4588999999999999998874
No 388
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.03 E-value=0.018 Score=44.20 Aligned_cols=23 Identities=26% Similarity=0.537 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
--|+|.|.+|+|||||+..+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999998853
No 389
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=95.02 E-value=0.013 Score=51.73 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHH
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYD 54 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~ 54 (352)
..++.|.|++|+|||||++.++-
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCChHHHHHHHHHc
Confidence 36889999999999999999875
No 390
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=95.01 E-value=0.01 Score=50.50 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHH
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
..++.|.|+.|+|||||++.++--
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 468999999999999999988754
No 391
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.01 E-value=0.015 Score=44.65 Aligned_cols=23 Identities=17% Similarity=0.199 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
--|+|.|.+|+|||||+..+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999998864
No 392
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=94.99 E-value=0.02 Score=49.12 Aligned_cols=33 Identities=24% Similarity=0.370 Sum_probs=24.7
Q ss_pred HHHHHHHHhcCCCCeEEEEEEcCCCCcHHHHHHHHHHH
Q 045677 18 LEKLKFLMCTGSNDVRTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 18 l~~l~~~l~~~~~~~~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
++++.+++. ..++.|.|++|+|||||++.+...
T Consensus 160 v~~lf~~l~-----geiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 160 IEELKEYLK-----GKISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp HHHHHHHHS-----SSEEEEECSTTSSHHHHHHHHSTT
T ss_pred HHHHHHHhc-----CCeEEEECCCCCcHHHHHHHhccc
Confidence 444555444 257889999999999999988743
No 393
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.99 E-value=0.0075 Score=50.60 Aligned_cols=27 Identities=26% Similarity=0.398 Sum_probs=23.3
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
+..+|+|.|..|+||||+++.++..+.
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 457899999999999999998887653
No 394
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=94.99 E-value=0.023 Score=52.62 Aligned_cols=29 Identities=17% Similarity=0.235 Sum_probs=24.6
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcCC
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMSHE 59 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~~~ 59 (352)
...+|+++|.+|+||||+++.++..+...
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~ 62 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWI 62 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 34789999999999999999999876533
No 395
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=94.98 E-value=0.02 Score=44.02 Aligned_cols=24 Identities=33% Similarity=0.271 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHH
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
..-|+|.|.+|+|||||+..+...
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 356889999999999999998754
No 396
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=94.96 E-value=0.015 Score=45.79 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHH
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
.--|+|.|.+|+|||+|+..+...
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhC
Confidence 355889999999999999988864
No 397
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=94.95 E-value=0.011 Score=51.71 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHH
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
..++.|.|++|+|||||++.++--
T Consensus 26 Ge~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 26 GEYFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHTS
T ss_pred CCEEEEECCCCccHHHHHHHHHcC
Confidence 368899999999999999998753
No 398
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=94.93 E-value=0.015 Score=51.36 Aligned_cols=22 Identities=32% Similarity=0.419 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHH
Q 045677 33 RTIGIWGMGGLGKTTLARVVYD 54 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~ 54 (352)
.++.|.|++|+|||||++.++-
T Consensus 30 e~~~llGpnGsGKSTLLr~iaG 51 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAG 51 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCcHHHHHHHHHHc
Confidence 6889999999999999999875
No 399
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=94.92 E-value=0.016 Score=44.92 Aligned_cols=24 Identities=25% Similarity=0.238 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHH
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
..-|+|.|.+|+|||||+..+...
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 456889999999999999998864
No 400
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.91 E-value=0.014 Score=51.14 Aligned_cols=23 Identities=39% Similarity=0.525 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHH
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYD 54 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~ 54 (352)
..++.|.|++|+|||||++.+.-
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEEcCCCchHHHHHHHHhc
Confidence 46889999999999999988775
No 401
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.91 E-value=0.019 Score=46.49 Aligned_cols=27 Identities=30% Similarity=0.391 Sum_probs=24.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcC
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLMSH 58 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~~~ 58 (352)
..+|+|.|+.|+||||++..+.+.+..
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 478999999999999999999998876
No 402
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=94.91 E-value=0.014 Score=45.94 Aligned_cols=22 Identities=32% Similarity=0.274 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 045677 34 TIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 34 ~v~I~G~~GiGKT~La~~~~~~ 55 (352)
-|+|.|.+|+|||||+..+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 3789999999999999998754
No 403
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=94.91 E-value=0.02 Score=44.81 Aligned_cols=24 Identities=29% Similarity=0.182 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHH
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
.--|+|.|.+|+|||||+..+...
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 455789999999999999998864
No 404
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.90 E-value=0.015 Score=45.05 Aligned_cols=23 Identities=22% Similarity=0.153 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
--|+|.|.+|+|||||+..+...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999998854
No 405
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.88 E-value=0.02 Score=44.72 Aligned_cols=24 Identities=33% Similarity=0.320 Sum_probs=20.2
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHH
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYD 54 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~ 54 (352)
...-|+|.|++|+|||||+..+..
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 446788999999999999987763
No 406
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=94.87 E-value=0.017 Score=45.53 Aligned_cols=24 Identities=25% Similarity=0.216 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHH
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
..-|+|.|.+|+|||||+..+...
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 355889999999999999998864
No 407
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=94.87 E-value=0.016 Score=45.88 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
..|+|.|.+|+|||||+..+...
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46789999999999999998863
No 408
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=94.87 E-value=0.025 Score=48.10 Aligned_cols=36 Identities=22% Similarity=0.415 Sum_probs=26.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeec
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADV 69 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~ 69 (352)
+++.|.|.||+||||++..++..+.+.. ..+.+.++
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~La~~G-~rVlliD~ 38 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAALAEMG-KKVMIVGC 38 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTT-CCEEEEEE
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHHHHCC-CeEEEEec
Confidence 5677799999999999999998876543 23444343
No 409
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=94.86 E-value=0.017 Score=45.32 Aligned_cols=23 Identities=22% Similarity=0.354 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
--|+|.|.+|+|||||+..+...
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 45789999999999999998864
No 410
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=94.85 E-value=0.016 Score=45.62 Aligned_cols=24 Identities=17% Similarity=0.412 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHH
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
...|+|.|.+|+|||||+..+...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHcC
Confidence 356889999999999999998764
No 411
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=94.85 E-value=0.017 Score=45.63 Aligned_cols=24 Identities=29% Similarity=0.318 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHH
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
.--|+|.|.+|+|||||+..+...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 345889999999999999998864
No 412
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=94.83 E-value=0.013 Score=45.64 Aligned_cols=23 Identities=22% Similarity=0.302 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
--|+|.|.+|+|||+|+..+...
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45889999999999999998864
No 413
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=94.82 E-value=0.042 Score=50.00 Aligned_cols=24 Identities=25% Similarity=0.196 Sum_probs=18.8
Q ss_pred EEEEEEcCCCCcHHHHHH-HHHHHh
Q 045677 33 RTIGIWGMGGLGKTTLAR-VVYDLM 56 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~-~~~~~~ 56 (352)
+-+.|.|.+|+|||+|+. .+++..
T Consensus 176 QR~~I~g~~g~GKT~Lal~~I~~~~ 200 (515)
T 2r9v_A 176 QRELIIGDRQTGKTAIAIDTIINQK 200 (515)
T ss_dssp CBEEEEEETTSSHHHHHHHHHHTTT
T ss_pred CEEEEEcCCCCCccHHHHHHHHHhh
Confidence 557899999999999964 555544
No 414
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.81 E-value=0.027 Score=43.61 Aligned_cols=24 Identities=29% Similarity=0.311 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHH
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
.--|+|.|.+|+|||||+..+...
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 345889999999999999998753
No 415
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=94.81 E-value=0.021 Score=51.88 Aligned_cols=25 Identities=24% Similarity=0.175 Sum_probs=19.1
Q ss_pred eEEEEEEcCCCCcHHHHHH-HHHHHh
Q 045677 32 VRTIGIWGMGGLGKTTLAR-VVYDLM 56 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~-~~~~~~ 56 (352)
.+-+.|.|.+|+|||+|+. .+++..
T Consensus 163 GQR~~Ifg~~g~GKT~Lal~~I~~~~ 188 (507)
T 1fx0_A 163 GQRELIIGDRQTGKTAVATDTILNQQ 188 (507)
T ss_dssp TCBCBEEESSSSSHHHHHHHHHHTCC
T ss_pred CCEEEEecCCCCCccHHHHHHHHHhh
Confidence 3557899999999999964 555543
No 416
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=94.80 E-value=0.018 Score=44.82 Aligned_cols=23 Identities=22% Similarity=0.219 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
.-|+|.|.+|+|||||+..+...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 45889999999999999998864
No 417
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=94.80 E-value=0.02 Score=45.86 Aligned_cols=27 Identities=19% Similarity=0.068 Sum_probs=24.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcCC
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLMSHE 59 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~~~~ 59 (352)
.+|+|.|+.|+||||+++.++..+.-.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~~ 33 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNIP 33 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTCC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 589999999999999999999987544
No 418
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=94.80 E-value=0.017 Score=45.26 Aligned_cols=24 Identities=21% Similarity=0.273 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHH
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
..-|+|.|.+|+|||||+..+...
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 355889999999999999998864
No 419
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=94.76 E-value=0.021 Score=44.28 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=20.3
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHH
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYD 54 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~ 54 (352)
...-|+|.|.+|+|||||+..+..
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCS
T ss_pred cceEEEEECCCCCCHHHHHHHHhc
Confidence 345688999999999999988864
No 420
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.76 E-value=0.018 Score=50.90 Aligned_cols=26 Identities=23% Similarity=0.391 Sum_probs=22.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
...+.|+|++|+|||||++.++....
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 46789999999999999999887643
No 421
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=94.76 E-value=0.022 Score=43.11 Aligned_cols=24 Identities=25% Similarity=0.250 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHh
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLM 56 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~ 56 (352)
.+.+|+|+.|+|||+++..+..-+
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 688899999999999998887654
No 422
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.76 E-value=0.019 Score=44.64 Aligned_cols=24 Identities=29% Similarity=0.253 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHH
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
.--|+|.|.+|+|||||+..+...
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 345889999999999999998764
No 423
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=94.75 E-value=0.01 Score=47.64 Aligned_cols=24 Identities=13% Similarity=0.176 Sum_probs=20.2
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHH
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYD 54 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~ 54 (352)
....++|.|++|+|||||++.+..
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 346789999999999999987653
No 424
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=94.74 E-value=0.019 Score=44.86 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHH
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
..-|+|.|.+|+|||||+..+...
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 356889999999999999998864
No 425
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=94.74 E-value=0.019 Score=44.85 Aligned_cols=23 Identities=26% Similarity=0.169 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
--|+|.|.+|+|||||+..+...
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 45889999999999999988754
No 426
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=94.73 E-value=0.018 Score=46.56 Aligned_cols=21 Identities=33% Similarity=0.514 Sum_probs=18.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHH
Q 045677 33 RTIGIWGMGGLGKTTLARVVY 53 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~ 53 (352)
.-|+|.|.+|+|||+|+..+.
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~ 58 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFA 58 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 458899999999999999886
No 427
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=94.73 E-value=0.019 Score=44.69 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHH
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
..-|+|.|.+|+|||||+..+...
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 456889999999999999998853
No 428
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=94.72 E-value=0.019 Score=45.61 Aligned_cols=23 Identities=13% Similarity=0.170 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
--|+|.|.+|+|||||+..+...
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45889999999999999998865
No 429
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=94.72 E-value=0.01 Score=51.94 Aligned_cols=23 Identities=39% Similarity=0.619 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHH
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYD 54 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~ 54 (352)
..++.|.|++|+|||||++.++-
T Consensus 31 Ge~~~llGpnGsGKSTLLr~iaG 53 (353)
T 1oxx_K 31 GERFGILGPSGAGKTTFMRIIAG 53 (353)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 36889999999999999999875
No 430
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=94.71 E-value=0.025 Score=45.10 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=21.3
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHH
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
...-|+|.|.+|+|||||+..+...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3456889999999999999998764
No 431
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=94.71 E-value=0.019 Score=49.15 Aligned_cols=25 Identities=28% Similarity=0.280 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHH
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
+...|+|.|.+|+|||||++.+...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3568999999999999999998854
No 432
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=94.71 E-value=0.02 Score=44.63 Aligned_cols=23 Identities=26% Similarity=0.122 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
--|+|.|.+|+|||||+..+...
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45789999999999999888754
No 433
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.70 E-value=0.019 Score=45.26 Aligned_cols=23 Identities=26% Similarity=0.166 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
--|+|.|.+|+|||||+..+...
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHhcC
Confidence 34889999999999999998865
No 434
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=94.69 E-value=0.025 Score=45.40 Aligned_cols=25 Identities=28% Similarity=0.137 Sum_probs=21.3
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHH
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
..--|+|.|.+|+|||||+..+...
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3456889999999999999998864
No 435
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=94.69 E-value=0.02 Score=45.08 Aligned_cols=24 Identities=21% Similarity=0.165 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHH
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
..-|+|.|.+|+|||||+..+...
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 345889999999999999998864
No 436
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=94.68 E-value=0.032 Score=43.47 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=21.3
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHH
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
..--|+|.|.+|+|||||+..+...
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456889999999999999998864
No 437
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=94.68 E-value=0.016 Score=51.36 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHH
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYD 54 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~ 54 (352)
..++.|.|++|+|||||++.++-
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCChHHHHHHHHhC
Confidence 46899999999999999998875
No 438
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=94.67 E-value=0.02 Score=46.45 Aligned_cols=22 Identities=23% Similarity=0.208 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 045677 34 TIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 34 ~v~I~G~~GiGKT~La~~~~~~ 55 (352)
-|+|.|.+|+|||+|+..+...
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 3778999999999999988753
No 439
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=94.67 E-value=0.05 Score=56.33 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=20.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHH
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYD 54 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~ 54 (352)
...|.|+|++|+|||||+..+..
T Consensus 1105 Ge~vaIVG~SGsGKSTL~~lL~r 1127 (1321)
T 4f4c_A 1105 GQTLALVGPSGCGKSTVVALLER 1127 (1321)
T ss_dssp TCEEEEECSTTSSTTSHHHHHTT
T ss_pred CCEEEEECCCCChHHHHHHHHhc
Confidence 36789999999999999998875
No 440
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.67 E-value=0.02 Score=45.42 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHH
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
.--|+|.|.+|+|||||+..+...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 355889999999999999998864
No 441
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=94.67 E-value=0.02 Score=45.04 Aligned_cols=23 Identities=26% Similarity=0.291 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
--|+|.|.+|+|||||+..+...
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHcC
Confidence 45889999999999999998864
No 442
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=94.65 E-value=0.092 Score=51.30 Aligned_cols=34 Identities=21% Similarity=0.223 Sum_probs=25.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEe
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFL 66 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~ 66 (352)
++++|+|++|+|||+++..++..+.......+.+
T Consensus 372 ~~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv 405 (800)
T 2wjy_A 372 PLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLV 405 (800)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEE
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEE
Confidence 5788999999999999988887765432334444
No 443
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=94.63 E-value=0.021 Score=45.08 Aligned_cols=23 Identities=30% Similarity=0.226 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
--|+|.|.+|+|||||+..+...
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 45889999999999999998764
No 444
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.63 E-value=0.019 Score=45.88 Aligned_cols=24 Identities=33% Similarity=0.376 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHH
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
..-|+|.|.+|+|||||+..+...
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 356889999999999999998764
No 445
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=94.63 E-value=0.02 Score=45.45 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=19.6
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHH
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVY 53 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~ 53 (352)
...-|+|.|.+|+|||||+..+.
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTC
T ss_pred cEEEEEEECCCCCCHHHHHHHHH
Confidence 34568899999999999998875
No 446
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=94.62 E-value=0.028 Score=46.48 Aligned_cols=34 Identities=32% Similarity=0.627 Sum_probs=25.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeec
Q 045677 35 IGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADV 69 (352)
Q Consensus 35 v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~ 69 (352)
|.|.|.||+||||++..++..+.+... .+.+.++
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~-~VlliD~ 36 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYD-KIYAVDG 36 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCS-CEEEEEE
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCC-eEEEEeC
Confidence 455999999999999999998876643 3444443
No 447
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=94.62 E-value=0.021 Score=44.95 Aligned_cols=24 Identities=25% Similarity=0.203 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHH
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
..-|+|.|.+|+|||||+..+...
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 456889999999999999998754
No 448
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.62 E-value=0.04 Score=43.62 Aligned_cols=28 Identities=14% Similarity=-0.236 Sum_probs=23.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcCC
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLMSHE 59 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~~~~ 59 (352)
..+.+++|+.|+||||.+...+.+....
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~ 35 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIA 35 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 4799999999999999998888876433
No 449
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=94.61 E-value=0.025 Score=46.52 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHH
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
...-|+|.|.+|+|||||++.+...
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHcCC
Confidence 4567899999999999999998854
No 450
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=94.61 E-value=0.02 Score=45.30 Aligned_cols=24 Identities=17% Similarity=0.245 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHH
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
.--|+|.|.+|+|||||+..+...
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 345889999999999999998864
No 451
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.60 E-value=0.019 Score=46.47 Aligned_cols=25 Identities=32% Similarity=0.372 Sum_probs=21.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
.++.|+|++|+||||+++.+...+.
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g 28 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELS 28 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4688999999999999999887653
No 452
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=94.60 E-value=0.02 Score=50.08 Aligned_cols=23 Identities=30% Similarity=0.458 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
.++.|.|++|+|||||++.+...
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCC
T ss_pred CEEEEECCCCccHHHHHHHHhcc
Confidence 57889999999999999988743
No 453
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=94.60 E-value=0.025 Score=44.78 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=21.4
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHH
Q 045677 30 NDVRTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 30 ~~~~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
....-|+|.|.+|+|||||+..+...
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 34577899999999999999888753
No 454
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=94.60 E-value=0.032 Score=44.44 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHH
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
..-|+|.|.+|+|||||+..+...
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999998754
No 455
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=94.60 E-value=0.052 Score=49.27 Aligned_cols=23 Identities=30% Similarity=0.274 Sum_probs=17.9
Q ss_pred EEEEEEcCCCCcHHHHH-HHHHHH
Q 045677 33 RTIGIWGMGGLGKTTLA-RVVYDL 55 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La-~~~~~~ 55 (352)
+-+.|.|.+|+|||+|+ ..+++.
T Consensus 163 QR~~Ifg~~g~GKT~l~l~~I~n~ 186 (513)
T 3oaa_A 163 QRELIIGDRQTGKTALAIDAIINQ 186 (513)
T ss_dssp CBCEEEESSSSSHHHHHHHHHHTT
T ss_pred CEEEeecCCCCCcchHHHHHHHhh
Confidence 55779999999999996 455543
No 456
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=94.58 E-value=0.025 Score=48.68 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=22.7
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHH
Q 045677 30 NDVRTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 30 ~~~~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
+....|+|+|.+|+|||||++.+...
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 45688999999999999999998753
No 457
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=94.58 E-value=0.022 Score=45.06 Aligned_cols=24 Identities=29% Similarity=0.259 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHH
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
.--|+|.|.+|+|||||+..+...
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECcCCCCHHHHHHHHhcC
Confidence 345889999999999999998864
No 458
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=94.57 E-value=0.031 Score=50.42 Aligned_cols=26 Identities=19% Similarity=0.264 Sum_probs=21.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcC
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLMSH 58 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~~~ 58 (352)
+-+.|.|.+|+|||+|+.+++.....
T Consensus 153 Qr~~Ifgg~G~GKt~Ll~~Ia~~~~~ 178 (469)
T 2c61_A 153 QKLPIFSASGLPHNEIALQIARQASV 178 (469)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 44667899999999999999987653
No 459
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.53 E-value=0.018 Score=50.78 Aligned_cols=25 Identities=36% Similarity=0.486 Sum_probs=22.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
..+.|+|+.|+|||||++.+...+.
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 5789999999999999999987654
No 460
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=94.52 E-value=0.021 Score=45.47 Aligned_cols=23 Identities=30% Similarity=0.183 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
.-|+|.|.+|+|||||+..+...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 45889999999999999998754
No 461
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=94.52 E-value=0.021 Score=45.48 Aligned_cols=25 Identities=32% Similarity=0.379 Sum_probs=21.4
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHH
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
...-|+|.|.+|+|||||+..+...
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhC
Confidence 3456889999999999999998864
No 462
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=94.50 E-value=0.24 Score=48.26 Aligned_cols=23 Identities=26% Similarity=0.198 Sum_probs=19.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
..++|.|+.|+|||+++..++..
T Consensus 110 ~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 110 QIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999977766543
No 463
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=94.50 E-value=0.023 Score=45.16 Aligned_cols=24 Identities=17% Similarity=0.188 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHH
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
..-|+|.|.+|+|||||+..+...
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 456889999999999999998754
No 464
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=94.49 E-value=0.028 Score=45.29 Aligned_cols=24 Identities=38% Similarity=0.403 Sum_probs=20.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHH
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
.--|+|.|.+|+|||||+..+...
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC-
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 456889999999999999998753
No 465
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=94.49 E-value=0.023 Score=45.69 Aligned_cols=24 Identities=25% Similarity=0.174 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHH
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
...|+|.|.+|+|||||+..+...
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 356889999999999999998864
No 466
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=94.49 E-value=0.023 Score=44.83 Aligned_cols=24 Identities=25% Similarity=0.259 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHH
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
..-|+|.|.+|+|||||+..+...
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 345889999999999999998864
No 467
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=94.48 E-value=0.027 Score=45.93 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=21.9
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHH
Q 045677 30 NDVRTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 30 ~~~~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
....-|+|.|.+|+|||||+..+...
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34577899999999999999988754
No 468
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=94.47 E-value=0.049 Score=47.27 Aligned_cols=35 Identities=29% Similarity=0.245 Sum_probs=27.6
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHhcCCCccee
Q 045677 30 NDVRTIGIWGMGGLGKTTLARVVYDLMSHEFDGSS 64 (352)
Q Consensus 30 ~~~~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~ 64 (352)
+..+++++.|.||+||||++..++..+.+......
T Consensus 17 ~~~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVl 51 (329)
T 2woo_A 17 TSLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVL 51 (329)
T ss_dssp TTCCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEE
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEE
Confidence 34578889999999999999999988776543333
No 469
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=94.44 E-value=0.017 Score=49.44 Aligned_cols=22 Identities=36% Similarity=0.514 Sum_probs=18.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHH
Q 045677 33 RTIGIWGMGGLGKTTLARVVYD 54 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~ 54 (352)
--|+|.|++|+|||||++.++.
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 3468999999999999999764
No 470
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=94.44 E-value=0.021 Score=45.42 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=19.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHH
Q 045677 33 RTIGIWGMGGLGKTTLARVVYD 54 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~ 54 (352)
.-|+|.|++|+|||||+..+..
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4578999999999999998764
No 471
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=94.44 E-value=0.024 Score=44.64 Aligned_cols=23 Identities=35% Similarity=0.341 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
.-|+|.|.+|+|||||+..+...
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45889999999999999998864
No 472
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=94.43 E-value=0.028 Score=52.94 Aligned_cols=27 Identities=26% Similarity=0.372 Sum_probs=24.1
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
...+|+|+|.+|+||||+++.+...+.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~ 77 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLV 77 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 457899999999999999999998873
No 473
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=94.43 E-value=0.099 Score=48.06 Aligned_cols=23 Identities=30% Similarity=0.273 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
+-+.|.|++|+|||+|+.++++.
T Consensus 228 qr~~I~g~~g~GKT~L~~~ia~~ 250 (588)
T 3mfy_A 228 GTAAIPGPAGSGKTVTQHQLAKW 250 (588)
T ss_dssp CEEEECSCCSHHHHHHHHHHHHH
T ss_pred CeEEeecCCCCCHHHHHHHHHhc
Confidence 56789999999999999998765
No 474
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=94.41 E-value=0.044 Score=48.09 Aligned_cols=36 Identities=25% Similarity=0.201 Sum_probs=27.7
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHhc--CCCcceeE
Q 045677 30 NDVRTIGIWGMGGLGKTTLARVVYDLMS--HEFDGSSF 65 (352)
Q Consensus 30 ~~~~~v~I~G~~GiGKT~La~~~~~~~~--~~~~~~~~ 65 (352)
....++++.|.||+||||++..++..+. +.......
T Consensus 16 ~~~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLL 53 (354)
T 2woj_A 16 TTHKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLL 53 (354)
T ss_dssp SSCCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEE
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEE
Confidence 3457888899999999999999998877 55433333
No 475
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=94.40 E-value=0.023 Score=45.38 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHH
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
..-|+|.|.+|+|||||+..+...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 356889999999999999998764
No 476
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.36 E-value=0.039 Score=50.49 Aligned_cols=27 Identities=19% Similarity=0.272 Sum_probs=23.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcC
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDLMSH 58 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~~~~ 58 (352)
...|+++|.+|+||||+++.++..+..
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~ 65 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNF 65 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 467899999999999999999987653
No 477
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.36 E-value=0.033 Score=44.03 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHH
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
..-|+|.|.+|+|||||+..+...
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCcHHHHHHHHHcC
Confidence 356889999999999999998864
No 478
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=94.35 E-value=0.026 Score=44.50 Aligned_cols=24 Identities=33% Similarity=0.322 Sum_probs=19.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHH
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
.--|+|.|.+|+|||||++.+...
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~ 37 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSK 37 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHHhh
Confidence 345889999999999999655544
No 479
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=94.34 E-value=0.023 Score=45.25 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=19.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHH
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
.--|+|.|.+|+|||||+..+...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC-
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 355889999999999999988743
No 480
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=94.33 E-value=0.092 Score=47.18 Aligned_cols=26 Identities=15% Similarity=0.227 Sum_probs=21.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcC
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLMSH 58 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~~~ 58 (352)
+-+.|.|.+|+|||+|+.++++....
T Consensus 148 Qr~~Ifgg~G~GKt~L~~~Ia~~~~a 173 (464)
T 3gqb_B 148 QKLPIFSGSGLPANEIAAQIARQATV 173 (464)
T ss_dssp CBCCEEEETTSCHHHHHHHHHHHCBC
T ss_pred CEEEEecCCCCCchHHHHHHHHHHHh
Confidence 45678999999999999998877543
No 481
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.32 E-value=0.026 Score=45.23 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHH
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
..-|+|.|.+|+|||||+..+...
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 356889999999999999998854
No 482
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=94.31 E-value=0.021 Score=44.64 Aligned_cols=24 Identities=25% Similarity=0.180 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHH
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
..-|+|.|.+|+|||||+..+...
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 356889999999999999998753
No 483
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=94.30 E-value=0.025 Score=44.91 Aligned_cols=24 Identities=25% Similarity=0.169 Sum_probs=19.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHH
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
.--|+|.|.+|+|||||+..+...
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 355889999999999999988753
No 484
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=94.25 E-value=0.063 Score=55.61 Aligned_cols=24 Identities=25% Similarity=0.475 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHH
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
...+.|+|++|+|||||++.+...
T Consensus 444 G~~vaivG~sGsGKSTll~ll~~~ 467 (1321)
T 4f4c_A 444 GQTVALVGSSGCGKSTIISLLLRY 467 (1321)
T ss_dssp TCEEEEEECSSSCHHHHHHHHTTS
T ss_pred CcEEEEEecCCCcHHHHHHHhccc
Confidence 468999999999999999888753
No 485
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=94.25 E-value=0.025 Score=44.69 Aligned_cols=23 Identities=35% Similarity=0.372 Sum_probs=19.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
.-|+|.|.+|+|||||+..+...
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC-
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 45889999999999999988743
No 486
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.24 E-value=0.026 Score=45.20 Aligned_cols=24 Identities=29% Similarity=0.284 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHH
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
..-|+|.|.+|+|||||+..+...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcC
Confidence 356889999999999999988763
No 487
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=94.22 E-value=0.043 Score=43.76 Aligned_cols=36 Identities=25% Similarity=0.238 Sum_probs=25.3
Q ss_pred EEEEEE-cCCCCcHHHHHHHHHHHhcCCCcceeEeeec
Q 045677 33 RTIGIW-GMGGLGKTTLARVVYDLMSHEFDGSSFLADV 69 (352)
Q Consensus 33 ~~v~I~-G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~ 69 (352)
+++.|+ +.||+||||++..++..+.+... .+.+.++
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~-~vlliD~ 38 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGY-NIAVVDT 38 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTC-CEEEEEC
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCC-eEEEEEC
Confidence 455565 78999999999999998766533 3344333
No 488
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=94.19 E-value=0.033 Score=43.59 Aligned_cols=25 Identities=20% Similarity=0.238 Sum_probs=21.1
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHH
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
...-|+|.|.+|+|||||+..+...
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3466889999999999999988754
No 489
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=94.18 E-value=0.091 Score=51.36 Aligned_cols=25 Identities=28% Similarity=0.197 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
++++|.|++|+|||+++..++..+.
T Consensus 376 ~~~lI~GppGTGKT~~i~~~i~~l~ 400 (802)
T 2xzl_A 376 PLSLIQGPPGTGKTVTSATIVYHLS 400 (802)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHH
Confidence 5788999999999999888776543
No 490
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.16 E-value=0.024 Score=50.83 Aligned_cols=21 Identities=38% Similarity=0.550 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 045677 35 IGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 35 v~I~G~~GiGKT~La~~~~~~ 55 (352)
+.|+|++|+|||||++.++..
T Consensus 45 vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 899999999999999998753
No 491
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=94.15 E-value=0.035 Score=43.89 Aligned_cols=23 Identities=26% Similarity=0.198 Sum_probs=19.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHH
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYD 54 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~ 54 (352)
.--|+|.|.+|+|||+|+..+..
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCS
T ss_pred ccEEEEECCCCCCHHHHHHHHHh
Confidence 45688999999999999998763
No 492
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.14 E-value=0.028 Score=44.34 Aligned_cols=23 Identities=26% Similarity=0.195 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
.-|+|.|.+|+|||+|+..+...
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45889999999999999998865
No 493
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.14 E-value=0.024 Score=49.28 Aligned_cols=85 Identities=18% Similarity=0.208 Sum_probs=48.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcCCCcceeEeeeccccccCCCcHHHHHHHHHHHHhcccCCCccchhhhHHHHHhhh
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDLMSHEFDGSSFLADVRERCDKEGSVISLQKQLLSDLLMLADNSIRNVYDGVNMIGSRL 112 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 112 (352)
..+.|+|+.|+|||||++.+...+... ...+.+.+....... .. . .. ..... .........+...+
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~~-~g~i~i~~~~e~~~~-~~-~-------~~-i~~~~---ggg~~~r~~la~aL 237 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPKE-ERIISIEDTEEIVFK-HH-K-------NY-TQLFF---GGNITSADCLKSCL 237 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCTT-SCEEEEESSCCCCCS-SC-S-------SE-EEEEC---BTTBCHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCC-CcEEEECCeeccccc-cc-h-------hE-EEEEe---CCChhHHHHHHHHh
Confidence 579999999999999999988765432 334444322111000 00 0 00 00000 02234445566667
Q ss_pred CCceEEEEEeCCCChhhhh
Q 045677 113 RHKKVLLLIDDVADVEQLR 131 (352)
Q Consensus 113 ~~~~~llvlDd~~~~~~~~ 131 (352)
..++-++++|+..+.+.++
T Consensus 238 ~~~p~ilildE~~~~e~~~ 256 (330)
T 2pt7_A 238 RMRPDRIILGELRSSEAYD 256 (330)
T ss_dssp TSCCSEEEECCCCSTHHHH
T ss_pred hhCCCEEEEcCCChHHHHH
Confidence 7788899999997644444
No 494
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=94.13 E-value=0.03 Score=45.15 Aligned_cols=23 Identities=22% Similarity=0.160 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
--|+|.|.+|+|||+|+..+...
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 45889999999999999998764
No 495
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=94.13 E-value=0.032 Score=47.79 Aligned_cols=25 Identities=24% Similarity=0.298 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHH
Q 045677 31 DVRTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 31 ~~~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
....|+|.|.+|+|||||++.+...
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467999999999999999998854
No 496
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=94.13 E-value=0.029 Score=44.77 Aligned_cols=24 Identities=17% Similarity=0.162 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHH
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
..-|+|.|.+|+|||+|+..+...
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhhC
Confidence 455889999999999999998753
No 497
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=94.09 E-value=0.03 Score=44.63 Aligned_cols=24 Identities=33% Similarity=0.296 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHH
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
..-|+|.|.+|+|||||+..+...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345889999999999999988864
No 498
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.09 E-value=0.035 Score=45.21 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 045677 34 TIGIWGMGGLGKTTLARVVYDLMS 57 (352)
Q Consensus 34 ~v~I~G~~GiGKT~La~~~~~~~~ 57 (352)
-+.|.|++|+||||++..++..+.
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFG 33 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred ceeeECCCCCCHHHHHHHHHHHhC
Confidence 367999999999999999987763
No 499
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=94.08 E-value=0.017 Score=45.15 Aligned_cols=24 Identities=21% Similarity=0.205 Sum_probs=10.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHH
Q 045677 32 VRTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 32 ~~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
..-|+|.|.+|+|||||+..+...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEECCCCC------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 355889999999999999888743
No 500
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=94.08 E-value=0.031 Score=47.83 Aligned_cols=23 Identities=26% Similarity=0.250 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 045677 33 RTIGIWGMGGLGKTTLARVVYDL 55 (352)
Q Consensus 33 ~~v~I~G~~GiGKT~La~~~~~~ 55 (352)
..++|.|++|+||||+|..+..+
T Consensus 145 ~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 145 VGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEEEEeCCCCCHHHHHHHHHhc
Confidence 67999999999999999999874
Done!