BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045684
(121 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr,
Minimized Mean Structure
pdb|3GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr,
46 Structures
Length = 70
Score = 97.8 bits (242), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 48/69 (69%), Positives = 56/69 (81%), Gaps = 2/69 (2%)
Query: 21 KDRHYRGVRRRQWGTYAAEIRDSNPKKKGARVWLGTYKTPEGAALAYDRAAFKMRGSKAK 80
K +HYRGVR+R WG +AAEIRD P K GARVWLGT++T E AALAYDRAAF+MRGS+A
Sbjct: 2 KGKHYRGVRQRPWGKFAAEIRD--PAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRAL 59
Query: 81 LNFPHLLES 89
LNFP + S
Sbjct: 60 LNFPLRVNS 68
>pdb|1GCC|A Chain A, Solution Nmr Structure Of The Complex Of Gcc-Box Binding
Domain Of Aterf1 And Gcc-Box Dna, Minimized Average
Structure
Length = 63
Score = 95.5 bits (236), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 46/62 (74%), Positives = 53/62 (85%), Gaps = 2/62 (3%)
Query: 23 RHYRGVRRRQWGTYAAEIRDSNPKKKGARVWLGTYKTPEGAALAYDRAAFKMRGSKAKLN 82
+HYRGVR+R WG +AAEIRD P K GARVWLGT++T E AALAYDRAAF+MRGS+A LN
Sbjct: 1 KHYRGVRQRPWGKFAAEIRD--PAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLN 58
Query: 83 FP 84
FP
Sbjct: 59 FP 60
>pdb|3MKB|A Chain A, Crystal Structure Determination Of Shortfin Mako (Isurus
Oxyrinchus) Hemoglobin At 1.9 Angstrom Resolution
pdb|3MKB|C Chain C, Crystal Structure Determination Of Shortfin Mako (Isurus
Oxyrinchus) Hemoglobin At 1.9 Angstrom Resolution
Length = 140
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 25 YRGVRRRQWGTYAAEIRDSNPKKKGARVWLGTYKTPEGAALAYDRAAFKMRGSKAKLN 82
+ GV R G A +I S P+ GA + T GA +D A + G+K +L+
Sbjct: 2 FTGVERSTIGAIA-KILASTPEAYGAEALARLFATHPGAKSYFDYADYSAAGAKVQLH 58
>pdb|2QN4|A Chain A, Structure And Function Study Of Rice Bifunctional Alpha-
AmylaseSUBTILISIN INHIBITOR FROM ORYZA SATIVA
pdb|2QN4|B Chain B, Structure And Function Study Of Rice Bifunctional Alpha-
AmylaseSUBTILISIN INHIBITOR FROM ORYZA SATIVA
Length = 200
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
Query: 8 VVEAPDTQPPPAKKDRHYRGVRRRQWGTYAAEIRDS----NPKKKGARVWLGTYKTP 60
VV P P P+ ++ +R V + G RDS + GAR WLG + P
Sbjct: 131 VVTGPLIGPSPSGRENAFR-VEKYGGGYKLVSCRDSCQDLGVSRDGARAWLGASQPP 186
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.129 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,276,435
Number of Sequences: 62578
Number of extensions: 112387
Number of successful extensions: 201
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 196
Number of HSP's gapped (non-prelim): 4
length of query: 121
length of database: 14,973,337
effective HSP length: 83
effective length of query: 38
effective length of database: 9,779,363
effective search space: 371615794
effective search space used: 371615794
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)