Query 045684
Match_columns 121
No_of_seqs 142 out of 1201
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 07:22:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045684.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045684hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gcc_A Ethylene responsive ele 99.9 1.1E-26 3.8E-31 148.4 6.0 62 24-87 2-63 (63)
2 3igm_B PF14_0633 protein; AP2 93.1 0.082 2.8E-06 34.3 3.2 23 20-42 3-26 (77)
3 1u3e_M HNH homing endonuclease 89.2 0.06 2.1E-06 38.8 -0.4 38 25-68 109-146 (174)
4 1z1b_A Integrase; protein-DNA 85.1 1.2 4.1E-05 33.6 4.8 42 26-74 14-55 (356)
5 1x60_A Sporulation-specific N- 50.0 10 0.00036 23.0 2.3 23 50-72 46-68 (79)
6 2z8u_A Tata-box-binding protei 47.5 26 0.00088 25.7 4.5 91 21-119 43-137 (188)
7 1mp9_A Tata-binding protein; t 47.3 29 0.00099 25.6 4.8 90 21-119 43-137 (198)
8 3jtz_A Integrase; four strande 47.2 29 0.001 22.1 4.2 38 34-74 36-75 (88)
9 1ais_A TBP, protein (tata-bind 46.6 27 0.00092 25.4 4.4 90 21-119 39-133 (182)
10 1uta_A FTSN, MSGA, cell divisi 44.4 14 0.00047 22.7 2.2 23 50-72 46-68 (81)
11 2ftc_I Mitochondrial ribosomal 37.5 54 0.0019 22.2 4.6 37 35-76 79-115 (118)
12 1b69_A Protein (integrase); in 36.7 42 0.0014 20.9 3.6 23 20-42 7-29 (69)
13 3eik_A Tata-box-binding protei 34.3 72 0.0025 24.0 5.2 48 22-75 74-122 (218)
14 3ju0_A Phage integrase; four s 30.0 63 0.0022 21.3 3.9 38 34-74 36-75 (108)
15 1ytb_A Protein (tata binding p 29.4 75 0.0026 22.9 4.5 47 22-74 36-83 (180)
16 1rm1_A Tata-box binding protei 24.7 1E+02 0.0034 23.4 4.6 48 22-75 96-144 (240)
17 1x4e_A RNA binding motif, sing 23.8 54 0.0018 19.2 2.4 34 52-85 49-83 (85)
18 3r8s_M 50S ribosomal protein L 22.5 1E+02 0.0035 21.3 4.0 35 36-76 92-126 (136)
No 1
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.93 E-value=1.1e-26 Score=148.40 Aligned_cols=62 Identities=74% Similarity=1.284 Sum_probs=58.0
Q ss_pred ceeeEEECCCCcEEEEEecCCCCCCCcEEeccCCCCHHHHHHHHHHHHHHhcCCCCCCCCCccc
Q 045684 24 HYRGVRRRQWGTYAAEIRDSNPKKKGARVWLGTYKTPEGAALAYDRAAFKMRGSKAKLNFPHLL 87 (121)
Q Consensus 24 ~yrGV~~~~~gkW~A~I~~~~~~~~gk~i~LG~f~t~eeAA~AYd~aa~~~~G~~a~~NFP~~~ 87 (121)
+|+||+++++|||+|+|++ +.++|+++|||+|+|+||||+|||.++++++|.++.+|||.++
T Consensus 2 ~yrGV~~r~~gkw~A~I~~--~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~~ 63 (63)
T 1gcc_A 2 HYRGVRQRPWGKFAAEIRD--PAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRV 63 (63)
T ss_dssp CCTTEEEETTTEEEEEEEE--TTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTTC
T ss_pred CcccEeeCCCCcEEEEEcc--ccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCcC
Confidence 6999998889999999999 6666899999999999999999999999999999999999863
No 2
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=93.08 E-value=0.082 Score=34.34 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=19.8
Q ss_pred CCCCceeeEE-ECCCCcEEEEEec
Q 045684 20 KKDRHYRGVR-RRQWGTYAAEIRD 42 (121)
Q Consensus 20 ~~tS~yrGV~-~~~~gkW~A~I~~ 42 (121)
..+|+|+||+ .++.+.|.|+-..
T Consensus 3 ~~~Sg~pGVsw~kR~~~WlA~W~e 26 (77)
T 3igm_B 3 HMSSGYPGVSWNKRMCAWLAFFYD 26 (77)
T ss_dssp -CCSSSTTEEEETTTTEEEEEEEE
T ss_pred CCCCCCCcEEeecCCceEEEEEec
Confidence 4579999999 7788999999998
No 3
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=89.17 E-value=0.06 Score=38.78 Aligned_cols=38 Identities=8% Similarity=-0.082 Sum_probs=28.4
Q ss_pred eeeEEECCCCcEEEEEecCCCCCCCcEEeccCCCCHHHHHHHHH
Q 045684 25 YRGVRRRQWGTYAAEIRDSNPKKKGARVWLGTYKTPEGAALAYD 68 (121)
Q Consensus 25 yrGV~~~~~gkW~A~I~~~~~~~~gk~i~LG~f~t~eeAA~AYd 68 (121)
++||.....++|.+.|.. + +.++||.|+|.+|||++|.
T Consensus 109 ~~g~~~~~~~k~~~vi~~-----~-~~~~~~~f~s~~eAa~~~G 146 (174)
T 1u3e_M 109 SKAQQIAKIKNQKPIIVI-----S-PDGIEKEYPSTKCACEELG 146 (174)
T ss_dssp HHHHHHHHHHTCCCEEEE-----C-TTSCEEEESCHHHHHHHHT
T ss_pred eeeeeeccCCCCceEEEE-----c-CCceEEeeCCHHHHHHHHC
Confidence 355543233568899988 5 5678999999999999964
No 4
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=85.08 E-value=1.2 Score=33.57 Aligned_cols=42 Identities=19% Similarity=0.131 Sum_probs=32.3
Q ss_pred eeEEECCCCcEEEEEecCCCCCCCcEEeccCCCCHHHHHHHHHHHHHHh
Q 045684 26 RGVRRRQWGTYAAEIRDSNPKKKGARVWLGTYKTPEGAALAYDRAAFKM 74 (121)
Q Consensus 26 rGV~~~~~gkW~A~I~~~~~~~~gk~i~LG~f~t~eeAA~AYd~aa~~~ 74 (121)
.||++++.|.|..+... +||++.+|. |..||..+...+...+
T Consensus 14 ~~v~~~~~g~~~~r~~~-----~gk~~~~g~--t~~eA~~~a~~~~~~~ 55 (356)
T 1z1b_A 14 PNLYIRNNGYYCYRDPR-----TGKEFGLGR--DRRIAITEAIQANIEL 55 (356)
T ss_dssp TTEEEETTTEEEEECTT-----TCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred ccceecCCCeEEEEeec-----CCeEEECCC--CHHHHHHHHHHHHHHH
Confidence 36877777899988766 788999996 8888888776655544
No 5
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=49.99 E-value=10 Score=22.96 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=19.3
Q ss_pred cEEeccCCCCHHHHHHHHHHHHH
Q 045684 50 ARVWLGTYKTPEGAALAYDRAAF 72 (121)
Q Consensus 50 k~i~LG~f~t~eeAA~AYd~aa~ 72 (121)
-++.+|.|.+.++|..+.++...
T Consensus 46 yRV~vGpf~~~~~A~~~~~~L~~ 68 (79)
T 1x60_A 46 YKVQIGAFSSKDNADTLAARAKN 68 (79)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHHH
Confidence 47899999999999998776654
No 6
>2z8u_A Tata-box-binding protein; transcription, DNA-binding protein, transcription factor, transcription regulation; 1.90A {Methanococcus jannaschii}
Probab=47.47 E-value=26 Score=25.67 Aligned_cols=91 Identities=14% Similarity=0.139 Sum_probs=50.7
Q ss_pred CCCceeeEE-ECCCCcEEEEEecCCCCCCCcEEeccCCCCHHHHHHHHHHHHHHhcCC-CCCCCCCccccccCCC-CC-C
Q 045684 21 KDRHYRGVR-RRQWGTYAAEIRDSNPKKKGARVWLGTYKTPEGAALAYDRAAFKMRGS-KAKLNFPHLLESVCND-ES-S 96 (121)
Q Consensus 21 ~tS~yrGV~-~~~~gkW~A~I~~~~~~~~gk~i~LG~f~t~eeAA~AYd~aa~~~~G~-~a~~NFP~~~~~~~~~-~~-~ 96 (121)
+..+|.||. +-+.-+-.+-|+. .||-+..|.. ++++|..|-.+.+..+.-. .....||+-.- +.- .+ .
T Consensus 43 ~P~~fpgli~Rl~~Pk~t~lIF~-----SGKiv~TGAk-S~e~a~~a~~~~~~~L~~lg~~~~~~~~~~I--~NIVas~~ 114 (188)
T 2z8u_A 43 EPEQFPGLVCRLSVPKVALLIFR-----SGKVNCTGAK-SKEEAEIAIKKIIKELKDAGIDVIENPEIKI--QNMVATAD 114 (188)
T ss_dssp ------CEEEEETTTTEEEEECT-----TSEEEEEEES-SHHHHHHHHHHHHHHHHHTTCCCCSSCCCEE--EEEEEEEE
T ss_pred CCCCcccEEEEcCCCcEEEEEeC-----CCeEEEecCC-CHHHHHHHHHHHHHHHHhcCCCccccCceEE--EEEEEEEe
Confidence 345789987 4455677889998 8999999974 5678888888876665321 11122332100 000 00 0
Q ss_pred CCchhcHHHHHHHHhhcccCCCC
Q 045684 97 SSTERSRDQAEKELQRHVLNTDA 119 (121)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~ 119 (121)
-.-....+.++..+..-.|+||-
T Consensus 115 l~~~i~L~~la~~~~~~eYePe~ 137 (188)
T 2z8u_A 115 LGIEPNLDDIALMVEGTEYEPEQ 137 (188)
T ss_dssp CSSCCCHHHHHHHSTTEEECTTT
T ss_pred cCCccCHHHHHhhCcCcEECCcc
Confidence 11123577787778888888873
No 7
>1mp9_A Tata-binding protein; transcription regulation, DNA-binding protein, transcription factor, DNA binding protein; 2.00A {Sulfolobus acidocaldarius} SCOP: d.129.1.1 d.129.1.1
Probab=47.33 E-value=29 Score=25.60 Aligned_cols=90 Identities=13% Similarity=0.114 Sum_probs=55.1
Q ss_pred CCCceeeEE-ECCCCcEEEEEecCCCCCCCcEEeccCCCCHHHHHHHHHHHHHHhcCCC-CCCCCCccccccCCCCC--C
Q 045684 21 KDRHYRGVR-RRQWGTYAAEIRDSNPKKKGARVWLGTYKTPEGAALAYDRAAFKMRGSK-AKLNFPHLLESVCNDES--S 96 (121)
Q Consensus 21 ~tS~yrGV~-~~~~gkW~A~I~~~~~~~~gk~i~LG~f~t~eeAA~AYd~aa~~~~G~~-a~~NFP~~~~~~~~~~~--~ 96 (121)
+..+|.||. +-+.-+-.+-|+. .||-+..|.. ++++|..|..+.+..+.-.. ....||+- .-..-. -
T Consensus 43 ~P~~fpgli~Rl~~Pk~t~lIF~-----SGKiv~TGak-S~e~a~~a~~~i~~~L~~lG~~~~~~~~~---~I~NIVas~ 113 (198)
T 1mp9_A 43 DPDQFPGLIFRLESPKITSLIFK-----SGKMVVTGAK-STDELIKAVKRIIKTLKKYGMQLTGKPKI---QIQNIVASA 113 (198)
T ss_dssp CTTTCSSEEEEETTTTEEEEECT-----TSEEEEECCS-SHHHHHHHHHHHHHHHHHTTCCCSSCCEE---EEEEEEEEE
T ss_pred CCccccceEEEcCCCceEEEEeC-----CCeEEEeccC-CHHHHHHHHHHHHHHHHHcCCcccCcCce---EEEEEEEEe
Confidence 345789987 4455677889998 8999999985 56788888888776664211 11223321 100000 0
Q ss_pred -CCchhcHHHHHHHHhhcccCCCC
Q 045684 97 -SSTERSRDQAEKELQRHVLNTDA 119 (121)
Q Consensus 97 -~~~~~~~~~~~~~~~~~~~~~~~ 119 (121)
-.-....+.++..+..-.|+|+-
T Consensus 114 ~l~~~i~L~~la~~~~~~~YePe~ 137 (198)
T 1mp9_A 114 NLHVIVNLDKAAFLLENNMYEPEQ 137 (198)
T ss_dssp ECSSEECHHHHHHHSSSEECCTTT
T ss_pred eCCCccCHHHHHhhcCCcEECCcc
Confidence 11124577787777777888773
No 8
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=47.19 E-value=29 Score=22.07 Aligned_cols=38 Identities=18% Similarity=0.197 Sum_probs=26.5
Q ss_pred CcEEEEEecCCCCCCCcEEeccCCC--CHHHHHHHHHHHHHHh
Q 045684 34 GTYAAEIRDSNPKKKGARVWLGTYK--TPEGAALAYDRAAFKM 74 (121)
Q Consensus 34 gkW~A~I~~~~~~~~gk~i~LG~f~--t~eeAA~AYd~aa~~~ 74 (121)
..|.-+.+. .. +.+++.||.|. |..+|....+.+...+
T Consensus 36 K~w~~ryr~--~G-k~~~~~LG~yp~~sL~~AR~~a~~~r~~l 75 (88)
T 3jtz_A 36 RHWYLKYRI--SG-KESRIALGAYPAISLSDARQQREGIRKML 75 (88)
T ss_dssp EEEEEEEEE--TT-EEEEEEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEe--CC-eEEEEEeECCCCCCHHHHHHHHHHHHHHH
Confidence 458888876 22 12568999998 5888887777766554
No 9
>1ais_A TBP, protein (tata-binding protein); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: d.129.1.1 d.129.1.1 PDB: 1d3u_A* 1pcz_A
Probab=46.60 E-value=27 Score=25.38 Aligned_cols=90 Identities=17% Similarity=0.116 Sum_probs=55.2
Q ss_pred CCCceeeEE-ECCCCcEEEEEecCCCCCCCcEEeccCCCCHHHHHHHHHHHHHHhcCCCC-CCCCCccccccCCC--CC-
Q 045684 21 KDRHYRGVR-RRQWGTYAAEIRDSNPKKKGARVWLGTYKTPEGAALAYDRAAFKMRGSKA-KLNFPHLLESVCND--ES- 95 (121)
Q Consensus 21 ~tS~yrGV~-~~~~gkW~A~I~~~~~~~~gk~i~LG~f~t~eeAA~AYd~aa~~~~G~~a-~~NFP~~~~~~~~~--~~- 95 (121)
+..+|.||. +-+.-+-.+-|+. .||-+..|. .++++|..|..+.+..+....- ...||+- .-.. .+
T Consensus 39 ~P~~fpgli~Rl~~P~~t~lIF~-----SGKiv~TGa-kS~~~~~~a~~~i~~~L~~lG~~~~~~~~~---~I~NIVas~ 109 (182)
T 1ais_A 39 NPEEFPGIICHLDDPKVALLIFS-----SGKLVVTGA-KSVQDIERAVAKLAQKLKSIGVKFKRAPQI---DVQNMVFSG 109 (182)
T ss_dssp CTTTCSSEEEECSSSCCEEEECT-----TSEEEEEEE-SSHHHHHHHHHHHHHHHHHTTCCCSSSCEE---EEEEEEEEE
T ss_pred CCCccccEEEEcCCCcEEEEEeC-----CCeEEEecC-CCHHHHHHHHHHHHHHHHHcCCCcccccce---EEEEEEEEE
Confidence 445789987 4455567888988 888888885 6788999998887766642111 1222221 1000 00
Q ss_pred CCCchhcHHHHHHHHhhcccCCCC
Q 045684 96 SSSTERSRDQAEKELQRHVLNTDA 119 (121)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~ 119 (121)
.---....+.++..+....|+||-
T Consensus 110 ~l~~~i~L~~la~~~~~~~YePe~ 133 (182)
T 1ais_A 110 DIGREFNLDVVALTLPNCEYEPEQ 133 (182)
T ss_dssp ECSSCCCHHHHHHHSTTEECCTTT
T ss_pred EcCCccCHHHHHhhCCCCEECCcc
Confidence 011124577777777888888873
No 10
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=44.44 E-value=14 Score=22.70 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=19.4
Q ss_pred cEEeccCCCCHHHHHHHHHHHHH
Q 045684 50 ARVWLGTYKTPEGAALAYDRAAF 72 (121)
Q Consensus 50 k~i~LG~f~t~eeAA~AYd~aa~ 72 (121)
-++.+|.|.+.++|..+.++...
T Consensus 46 yRV~vGpf~s~~~A~~~~~~L~~ 68 (81)
T 1uta_A 46 NRVVIGPVKGKENADSTLNRLKM 68 (81)
T ss_dssp EEEEESSCBTTTHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHHH
Confidence 47999999999999988777655
No 11
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_I
Probab=37.52 E-value=54 Score=22.17 Aligned_cols=37 Identities=19% Similarity=0.104 Sum_probs=28.0
Q ss_pred cEEEEEecCCCCCCCcEEeccCCCCHHHHHHHHHHHHHHhcC
Q 045684 35 TYAAEIRDSNPKKKGARVWLGTYKTPEGAALAYDRAAFKMRG 76 (121)
Q Consensus 35 kW~A~I~~~~~~~~gk~i~LG~f~t~eeAA~AYd~aa~~~~G 76 (121)
-|.|.|.. ...-+-++...+++.|..|...|+.+|-+
T Consensus 79 ~wva~Vk~-----G~ilfEi~g~~~~~~a~eAlr~a~~KlP~ 115 (118)
T 2ftc_I 79 HYVTPVKA-----GRLVVEMGGRCEFEEVQGFLDQVAHKLPF 115 (118)
T ss_pred EEEEEECC-----CCEEEEEeccCCHHHHHHHHHHHHhhCCC
Confidence 39999986 32334566668899999999999988743
No 12
>1b69_A Protein (integrase); integrase, DNA binding, transposition, complex, beta-sheet recognition; HET: DNA; NMR {Enterococcus faecalis} SCOP: d.10.1.1 PDB: 1tn9_A* 1bb8_A 2bb8_A
Probab=36.71 E-value=42 Score=20.91 Aligned_cols=23 Identities=22% Similarity=0.224 Sum_probs=18.8
Q ss_pred CCCCceeeEEECCCCcEEEEEec
Q 045684 20 KKDRHYRGVRRRQWGTYAAEIRD 42 (121)
Q Consensus 20 ~~tS~yrGV~~~~~gkW~A~I~~ 42 (121)
++.--+.|++.+..|+|+..+.+
T Consensus 7 kgr~L~~GesqR~dG~Y~yry~d 29 (69)
T 1b69_A 7 RGRILKTGESQRKDGRYLYKYID 29 (69)
T ss_dssp SSSCCCTTEEECSSSCEEEEEEC
T ss_pred CCCccCCCeEEccCCcEEEEEEc
Confidence 34456788998888999999988
No 13
>3eik_A Tata-box-binding protein; DNA-binding, initiation factor, nucleus, transcription; 1.90A {Encephalitozoon cuniculi} PDB: 3oci_A 3oc3_C
Probab=34.33 E-value=72 Score=23.96 Aligned_cols=48 Identities=23% Similarity=0.212 Sum_probs=38.9
Q ss_pred CCceeeEE-ECCCCcEEEEEecCCCCCCCcEEeccCCCCHHHHHHHHHHHHHHhc
Q 045684 22 DRHYRGVR-RRQWGTYAAEIRDSNPKKKGARVWLGTYKTPEGAALAYDRAAFKMR 75 (121)
Q Consensus 22 tS~yrGV~-~~~~gkW~A~I~~~~~~~~gk~i~LG~f~t~eeAA~AYd~aa~~~~ 75 (121)
..+|.||. +-..-+-.+-|+. .||-+..|. .++++|..|.++.+..+.
T Consensus 74 Pe~Fpglv~Rl~~Pk~t~LIF~-----SGKiV~TGA-kS~e~a~~A~~ki~~~L~ 122 (218)
T 3eik_A 74 PKRFAAVIMRIREPKTTALIFA-----SGKMVITGA-KSEKSSRMAAQRYAKIIH 122 (218)
T ss_dssp TTTCSSEEEEETTTTEEEEECT-----TSEEEEEEE-SSHHHHHHHHHHHHHHHH
T ss_pred CccCceEEEEecCCcEEEEEEC-----CCeEEEEec-CCHHHHHHHHHHHHHHHH
Confidence 35788986 4466778899998 899999987 569999999999887775
No 14
>3ju0_A Phage integrase; four stranded beta-sheet, DNA binding protein; 1.60A {Pectobacterium atrosepticum}
Probab=29.99 E-value=63 Score=21.29 Aligned_cols=38 Identities=24% Similarity=0.166 Sum_probs=25.7
Q ss_pred CcEEEEEecCCCCCCCcEEeccCCC--CHHHHHHHHHHHHHHh
Q 045684 34 GTYAAEIRDSNPKKKGARVWLGTYK--TPEGAALAYDRAAFKM 74 (121)
Q Consensus 34 gkW~A~I~~~~~~~~gk~i~LG~f~--t~eeAA~AYd~aa~~~ 74 (121)
..|.-+.+. .. +.+.+.||.|. |..+|....+.+...+
T Consensus 36 K~w~~rYr~--~G-K~~~~~LG~yp~~SLa~AR~~a~~~r~~l 75 (108)
T 3ju0_A 36 KYWRLSYRF--EK-KQRLLALGVYPAVSLADARQRRDEAKKLL 75 (108)
T ss_dssp EEEEEEEEE--TT-EEEEEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEE--cC-ceEEEecCCCCCCCHHHHHHHHHHHHHHH
Confidence 459888876 11 12567999997 4788877776655554
No 15
>1ytb_A Protein (tata binding protein (TBP)); protein-DNA complex, transcription/DNA complex; HET: DNA; 1.80A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1 PDB: 1ngm_A* 1tba_B 1nh2_A* 1ytf_A* 1tbp_A 1qna_A* 1qn3_A* 1qn5_A* 1qn6_A* 1qn7_A* 1qn8_A* 1qn9_A* 1qn4_A* 1qnb_A* 1qnc_A* 1qne_A* 1vok_A 1vol_B* 1vto_A* 1vtl_E* ...
Probab=29.37 E-value=75 Score=22.95 Aligned_cols=47 Identities=23% Similarity=0.205 Sum_probs=35.8
Q ss_pred CCceeeEE-ECCCCcEEEEEecCCCCCCCcEEeccCCCCHHHHHHHHHHHHHHh
Q 045684 22 DRHYRGVR-RRQWGTYAAEIRDSNPKKKGARVWLGTYKTPEGAALAYDRAAFKM 74 (121)
Q Consensus 22 tS~yrGV~-~~~~gkW~A~I~~~~~~~~gk~i~LG~f~t~eeAA~AYd~aa~~~ 74 (121)
..+|.|+. |-..-+-.+-|.. .||-+..|. .++++|..|.++.+..+
T Consensus 36 Pe~fpgli~R~~~Pk~~~lIF~-----SGKiv~TGa-ks~e~~~~a~~~i~~~L 83 (180)
T 1ytb_A 36 PKRFAAVIMRIREPKTTALIFA-----SGKMVVTGA-KSEDDSKLASRKYARII 83 (180)
T ss_dssp TTTCSSEEEEETTTTEEEEECT-----TSEEEEEEE-SSHHHHHHHHHHHHHHH
T ss_pred ccccCCEEEEeCCCcEEEEEEC-----CCeEEEEec-CCHHHHHHHHHHHHHHH
Confidence 35789987 4455677889998 899999887 46778888888766555
No 16
>1rm1_A Tata-box binding protein; yeast TFIIA, TBP protein, ATA-box DNA, transcription/DNA complex; 2.50A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1
Probab=24.72 E-value=1e+02 Score=23.43 Aligned_cols=48 Identities=23% Similarity=0.212 Sum_probs=35.8
Q ss_pred CCceeeEE-ECCCCcEEEEEecCCCCCCCcEEeccCCCCHHHHHHHHHHHHHHhc
Q 045684 22 DRHYRGVR-RRQWGTYAAEIRDSNPKKKGARVWLGTYKTPEGAALAYDRAAFKMR 75 (121)
Q Consensus 22 tS~yrGV~-~~~~gkW~A~I~~~~~~~~gk~i~LG~f~t~eeAA~AYd~aa~~~~ 75 (121)
...|.||. |-..-+-.+-|.. .||-+..|. .++++|..|.+..+..+.
T Consensus 96 Pe~Fpgli~Rl~~Pk~t~lIF~-----SGKiV~TGa-ks~e~a~~A~~~i~~~L~ 144 (240)
T 1rm1_A 96 PKRFAAVIMRIREPKTTALIFA-----SGKMVVTGA-KSEDDSKLASRKYARIIQ 144 (240)
T ss_dssp TTTCSEEEEEEETTEEEEEEET-----TSEEEEEEE-SSHHHHHHHHHHHHHHHH
T ss_pred CcccceEEEEeCCCcEEEEEEC-----CCeEEEEec-CCHHHHHHHHHHHHHHHH
Confidence 35788987 4355677889998 899999887 467788888877665553
No 17
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=23.82 E-value=54 Score=19.21 Aligned_cols=34 Identities=18% Similarity=0.137 Sum_probs=23.3
Q ss_pred EeccCCCCHHHHHHHHHHHH-HHhcCCCCCCCCCc
Q 045684 52 VWLGTYKTPEGAALAYDRAA-FKMRGSKAKLNFPH 85 (121)
Q Consensus 52 i~LG~f~t~eeAA~AYd~aa-~~~~G~~a~~NFP~ 85 (121)
+-.=.|.++++|..|....- ..+.|......+|.
T Consensus 49 ~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 49 YGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred EEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 45558999999999987533 34566666666654
No 18
>3r8s_M 50S ribosomal protein L16; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_K 1p86_K 1vs8_M 1vs6_M 2aw4_M 2awb_M 1vt2_M 2i2v_M 2j28_M 2i2t_M* 2qao_M* 2qba_M* 2qbc_M* 2qbe_M 2qbg_M 2qbi_M* 2qbk_M* 2qov_M 2qox_M 2qoz_M* ...
Probab=22.47 E-value=1e+02 Score=21.34 Aligned_cols=35 Identities=23% Similarity=0.057 Sum_probs=26.3
Q ss_pred EEEEEecCCCCCCCcEEeccCCCCHHHHHHHHHHHHHHhcC
Q 045684 36 YAAEIRDSNPKKKGARVWLGTYKTPEGAALAYDRAAFKMRG 76 (121)
Q Consensus 36 W~A~I~~~~~~~~gk~i~LG~f~t~eeAA~AYd~aa~~~~G 76 (121)
|.|.|.. ...-+-++. .+++.|..|...|+.+|-+
T Consensus 92 wva~Vk~-----G~ilfEi~g-~~~~~A~eAlr~a~~KLP~ 126 (136)
T 3r8s_M 92 WVALIQP-----GKVLYEMDG-VPEELAREAFKLAAAKLPI 126 (136)
T ss_dssp EEEEECT-----TCEEEEEES-SCHHHHHHHHHHHHTTCSS
T ss_pred EEEEECC-----CCEEEEEeC-CCHHHHHHHHHHHHhcCCC
Confidence 9999986 323345666 4899999999999887643
Done!