Query 045686
Match_columns 885
No_of_seqs 627 out of 4748
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 04:29:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045686.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045686hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 8.2E-99 2E-103 878.3 45.8 841 1-874 1-883 (889)
2 PLN03210 Resistant to P. syrin 100.0 1.5E-62 3.2E-67 607.9 45.1 621 151-842 183-912 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 4.9E-44 1.1E-48 380.8 18.2 280 157-441 1-284 (287)
4 KOG0444 Cytoskeletal regulator 99.9 6.8E-26 1.5E-30 238.8 -1.6 325 492-841 35-380 (1255)
5 KOG0444 Cytoskeletal regulator 99.9 7.1E-24 1.5E-28 223.7 -3.3 285 512-827 77-390 (1255)
6 KOG4194 Membrane glycoprotein 99.9 8.9E-23 1.9E-27 214.5 1.7 316 507-852 118-443 (873)
7 KOG4194 Membrane glycoprotein 99.8 1.1E-22 2.4E-27 213.8 0.4 313 513-857 102-425 (873)
8 PLN00113 leucine-rich repeat r 99.8 6.7E-21 1.5E-25 237.6 13.0 323 511-857 116-461 (968)
9 PLN00113 leucine-rich repeat r 99.8 1.3E-20 2.8E-25 235.0 13.1 316 512-858 163-485 (968)
10 PLN03210 Resistant to P. syrin 99.8 5.4E-19 1.2E-23 220.2 13.3 273 562-854 610-899 (1153)
11 KOG0472 Leucine-rich repeat pr 99.7 5.1E-20 1.1E-24 185.8 -3.2 306 507-834 200-539 (565)
12 KOG0472 Leucine-rich repeat pr 99.7 3.3E-20 7.2E-25 187.1 -8.6 237 514-778 69-308 (565)
13 KOG0618 Serine/threonine phosp 99.7 1.1E-17 2.3E-22 186.3 0.1 100 514-618 46-145 (1081)
14 PRK15387 E3 ubiquitin-protein 99.6 1.6E-15 3.4E-20 175.2 9.9 112 514-647 223-334 (788)
15 KOG0618 Serine/threonine phosp 99.6 1.6E-16 3.6E-21 177.0 -0.7 296 515-843 23-329 (1081)
16 PRK15387 E3 ubiquitin-protein 99.6 8.3E-15 1.8E-19 169.3 10.0 253 516-834 204-456 (788)
17 PRK15370 E3 ubiquitin-protein 99.5 1.3E-14 2.8E-19 169.0 8.8 118 514-648 200-317 (754)
18 PRK15370 E3 ubiquitin-protein 99.5 1.4E-14 3E-19 168.7 8.5 248 514-810 179-426 (754)
19 KOG0617 Ras suppressor protein 99.5 9.8E-16 2.1E-20 137.2 -4.4 157 507-680 27-185 (264)
20 PRK04841 transcriptional regul 99.5 2.7E-12 6E-17 159.6 22.1 298 148-486 10-333 (903)
21 KOG0617 Ras suppressor protein 99.4 1.4E-14 3.1E-19 129.8 -3.3 133 530-677 26-159 (264)
22 KOG4237 Extracellular matrix p 99.4 3.9E-14 8.5E-19 143.6 -0.6 277 514-810 68-357 (498)
23 KOG4658 Apoptotic ATPase [Sign 99.4 1.6E-13 3.4E-18 162.4 3.3 303 512-842 544-866 (889)
24 KOG4237 Extracellular matrix p 99.4 8.6E-15 1.9E-19 148.4 -7.3 108 538-649 68-178 (498)
25 TIGR03015 pepcterm_ATPase puta 99.3 3.6E-10 7.7E-15 119.0 22.6 184 171-362 41-242 (269)
26 PRK00411 cdc6 cell division co 99.3 5.6E-10 1.2E-14 124.4 24.0 295 152-463 30-357 (394)
27 COG2909 MalT ATP-dependent tra 99.2 2.5E-10 5.5E-15 128.1 17.4 304 146-487 13-340 (894)
28 TIGR02928 orc1/cdc6 family rep 99.2 3.2E-09 6.9E-14 117.1 24.6 298 152-464 15-350 (365)
29 cd00116 LRR_RI Leucine-rich re 99.2 2.9E-12 6.3E-17 138.9 0.3 88 559-648 19-121 (319)
30 KOG0532 Leucine-rich repeat (L 99.1 5.4E-12 1.2E-16 134.1 -0.7 126 515-648 77-202 (722)
31 PF01637 Arch_ATPase: Archaeal 99.1 3.9E-10 8.5E-15 116.1 12.0 198 154-357 1-233 (234)
32 PRK00080 ruvB Holliday junctio 99.1 9.9E-10 2.1E-14 118.4 15.1 275 152-465 25-311 (328)
33 PF14580 LRR_9: Leucine-rich r 99.1 1E-10 2.2E-15 111.1 5.5 134 530-676 12-148 (175)
34 TIGR00635 ruvB Holliday juncti 99.1 2.2E-09 4.7E-14 115.1 16.1 267 152-465 4-290 (305)
35 cd00116 LRR_RI Leucine-rich re 99.1 2.7E-11 5.7E-16 131.4 0.2 111 695-810 194-318 (319)
36 PF14580 LRR_9: Leucine-rich r 98.9 3.2E-10 7E-15 107.7 2.5 129 509-645 15-150 (175)
37 PF05729 NACHT: NACHT domain 98.9 6.4E-09 1.4E-13 100.6 11.6 143 174-326 1-163 (166)
38 KOG4341 F-box protein containi 98.8 3E-10 6.4E-15 117.0 -3.0 291 537-841 138-444 (483)
39 COG3899 Predicted ATPase [Gene 98.8 6.1E-08 1.3E-12 116.0 15.3 314 153-485 1-386 (849)
40 PRK06893 DNA replication initi 98.8 8.3E-08 1.8E-12 97.4 13.9 156 171-360 37-205 (229)
41 KOG3207 Beta-tubulin folding c 98.8 4.9E-10 1.1E-14 116.0 -2.4 160 512-681 120-284 (505)
42 COG2256 MGS1 ATPase related to 98.8 8.7E-08 1.9E-12 99.3 13.0 173 152-355 24-209 (436)
43 KOG0532 Leucine-rich repeat (L 98.7 1.2E-09 2.6E-14 116.7 -1.2 193 535-778 73-271 (722)
44 KOG3207 Beta-tubulin folding c 98.7 2.1E-09 4.6E-14 111.4 0.3 110 534-646 118-233 (505)
45 PTZ00112 origin recognition co 98.7 2.6E-07 5.7E-12 105.1 16.6 209 152-363 755-987 (1164)
46 KOG1259 Nischarin, modulator o 98.7 6E-09 1.3E-13 102.5 2.6 130 665-810 281-410 (490)
47 KOG1259 Nischarin, modulator o 98.7 1.2E-09 2.7E-14 107.2 -2.4 131 510-649 281-413 (490)
48 TIGR03420 DnaA_homol_Hda DnaA 98.7 1.9E-07 4.2E-12 95.3 12.9 175 152-361 15-204 (226)
49 COG4886 Leucine-rich repeat (L 98.7 1.1E-08 2.5E-13 114.1 3.5 175 560-780 113-290 (394)
50 COG1474 CDC6 Cdc6-related prot 98.6 2.6E-06 5.5E-11 91.8 19.6 202 152-358 17-238 (366)
51 PRK13342 recombination factor 98.6 4.9E-07 1.1E-11 100.5 14.5 179 151-360 11-198 (413)
52 KOG0531 Protein phosphatase 1, 98.5 1.4E-08 3.1E-13 113.3 0.3 214 535-777 70-287 (414)
53 KOG4341 F-box protein containi 98.5 4E-09 8.7E-14 108.8 -4.4 298 514-832 139-461 (483)
54 PF05496 RuvB_N: Holliday junc 98.5 1.1E-06 2.4E-11 85.3 12.4 177 150-362 22-225 (233)
55 PRK04195 replication factor C 98.5 4.4E-06 9.4E-11 94.9 18.2 181 152-363 14-207 (482)
56 PRK08727 hypothetical protein; 98.5 2.6E-06 5.6E-11 86.7 14.8 170 152-355 19-201 (233)
57 COG4886 Leucine-rich repeat (L 98.5 9.2E-08 2E-12 106.8 4.2 103 537-645 116-219 (394)
58 PRK08084 DNA replication initi 98.5 2.6E-06 5.6E-11 86.8 14.1 167 160-360 32-211 (235)
59 PF13855 LRR_8: Leucine rich r 98.5 1.2E-07 2.7E-12 73.8 3.4 58 588-646 2-60 (61)
60 TIGR02903 spore_lon_C ATP-depe 98.4 5.7E-05 1.2E-09 87.8 26.2 203 152-361 154-398 (615)
61 KOG2120 SCF ubiquitin ligase, 98.4 1.4E-08 3E-13 100.0 -3.0 85 563-648 185-273 (419)
62 KOG2028 ATPase related to the 98.4 1E-06 2.3E-11 89.4 10.0 176 152-353 138-331 (554)
63 PTZ00202 tuzin; Provisional 98.4 3.5E-06 7.5E-11 89.2 14.1 163 147-326 257-434 (550)
64 KOG2120 SCF ubiquitin ligase, 98.4 1E-08 2.2E-13 100.9 -4.3 58 588-646 186-245 (419)
65 cd00009 AAA The AAA+ (ATPases 98.4 1.5E-06 3.2E-11 82.0 10.1 126 155-297 1-131 (151)
66 PF13173 AAA_14: AAA domain 98.4 8.4E-07 1.8E-11 81.2 7.7 120 173-318 2-127 (128)
67 cd01128 rho_factor Transcripti 98.4 6.6E-07 1.4E-11 90.9 7.5 93 171-266 14-114 (249)
68 KOG1909 Ran GTPase-activating 98.4 6.7E-08 1.4E-12 97.9 0.0 247 559-833 26-308 (382)
69 KOG0531 Protein phosphatase 1, 98.4 8.9E-08 1.9E-12 107.0 0.7 195 560-778 69-266 (414)
70 PRK12402 replication factor C 98.3 5.8E-06 1.2E-10 90.2 14.5 196 152-357 15-225 (337)
71 PF13401 AAA_22: AAA domain; P 98.3 9.9E-07 2.2E-11 81.4 7.2 120 172-295 3-125 (131)
72 PF13855 LRR_8: Leucine rich r 98.3 3.5E-07 7.5E-12 71.2 3.3 58 563-621 1-60 (61)
73 PRK09087 hypothetical protein; 98.3 7.7E-06 1.7E-10 82.5 13.5 144 172-359 43-196 (226)
74 PRK07003 DNA polymerase III su 98.3 8.8E-06 1.9E-10 92.7 15.1 192 152-359 16-222 (830)
75 PRK08903 DnaA regulatory inact 98.3 6.1E-06 1.3E-10 84.1 12.9 175 152-363 18-204 (227)
76 COG3903 Predicted ATPase [Gene 98.3 5.7E-07 1.2E-11 94.2 5.2 296 172-489 13-318 (414)
77 PRK14949 DNA polymerase III su 98.3 6.2E-06 1.3E-10 95.9 13.9 193 152-358 16-220 (944)
78 PRK00440 rfc replication facto 98.3 1.1E-05 2.3E-10 87.4 15.2 179 152-356 17-201 (319)
79 PRK14963 DNA polymerase III su 98.3 8.9E-06 1.9E-10 91.6 14.7 191 152-355 14-214 (504)
80 PRK12323 DNA polymerase III su 98.3 6.7E-06 1.5E-10 92.4 13.3 195 152-358 16-225 (700)
81 PF13191 AAA_16: AAA ATPase do 98.3 2.2E-06 4.8E-11 84.4 8.3 47 153-199 1-50 (185)
82 PRK14961 DNA polymerase III su 98.3 1.5E-05 3.3E-10 87.0 15.5 190 152-356 16-218 (363)
83 KOG1859 Leucine-rich repeat pr 98.3 9.2E-08 2E-12 105.1 -2.0 176 509-706 105-291 (1096)
84 PRK14960 DNA polymerase III su 98.3 1.1E-05 2.4E-10 91.0 13.9 192 152-357 15-218 (702)
85 PRK05564 DNA polymerase III su 98.2 1.4E-05 3.1E-10 85.6 14.3 176 152-356 4-188 (313)
86 PRK14962 DNA polymerase III su 98.2 1.4E-05 3.1E-10 89.2 14.6 181 152-362 14-223 (472)
87 PLN03150 hypothetical protein; 98.2 8.9E-07 1.9E-11 103.6 5.2 86 565-651 420-506 (623)
88 PRK09112 DNA polymerase III su 98.2 1.3E-05 2.8E-10 86.1 12.9 199 148-358 19-240 (351)
89 TIGR02397 dnaX_nterm DNA polym 98.2 3.9E-05 8.5E-10 84.3 17.0 182 152-359 14-219 (355)
90 PRK14957 DNA polymerase III su 98.2 2.2E-05 4.7E-10 88.6 14.9 184 152-361 16-224 (546)
91 KOG2982 Uncharacterized conser 98.2 3.2E-07 6.9E-12 90.7 0.3 104 540-647 48-158 (418)
92 PLN03025 replication factor C 98.2 1.3E-05 2.8E-10 86.1 12.7 180 152-355 13-197 (319)
93 PRK09376 rho transcription ter 98.2 4.8E-06 1E-10 88.0 8.8 91 171-266 167-267 (416)
94 PF00308 Bac_DnaA: Bacterial d 98.2 2.7E-05 5.8E-10 78.3 13.8 164 173-359 34-209 (219)
95 PRK13341 recombination factor 98.2 1.3E-05 2.8E-10 93.9 13.1 167 152-354 28-213 (725)
96 PRK14956 DNA polymerase III su 98.2 1.1E-05 2.4E-10 88.4 11.7 190 152-355 18-219 (484)
97 COG1126 GlnQ ABC-type polar am 98.2 1.2E-05 2.5E-10 76.8 10.2 130 171-304 26-204 (240)
98 PRK06645 DNA polymerase III su 98.2 3.6E-05 7.9E-10 86.3 15.8 194 152-356 21-227 (507)
99 PRK14964 DNA polymerase III su 98.2 2.8E-05 6.2E-10 86.4 14.7 179 152-355 13-214 (491)
100 PRK05896 DNA polymerase III su 98.1 2.1E-05 4.5E-10 88.8 13.4 194 152-360 16-223 (605)
101 KOG1909 Ran GTPase-activating 98.1 2.8E-07 6.1E-12 93.4 -1.6 90 510-600 27-133 (382)
102 PRK07940 DNA polymerase III su 98.1 5.1E-05 1.1E-09 82.7 15.5 185 152-358 5-213 (394)
103 PLN03150 hypothetical protein; 98.1 3.3E-06 7.1E-11 98.8 6.7 107 538-647 419-527 (623)
104 PRK14951 DNA polymerase III su 98.1 3.7E-05 7.9E-10 88.0 14.4 193 152-357 16-224 (618)
105 TIGR01242 26Sp45 26S proteasom 98.1 2.3E-05 5E-10 85.9 12.2 173 152-352 122-328 (364)
106 PRK07994 DNA polymerase III su 98.1 2.8E-05 6.1E-10 89.1 12.9 192 152-358 16-220 (647)
107 PRK05642 DNA replication initi 98.1 6.4E-05 1.4E-09 76.5 13.9 154 173-361 45-211 (234)
108 TIGR00767 rho transcription te 98.1 9.3E-06 2E-10 86.4 7.9 94 171-266 166-266 (415)
109 PRK07471 DNA polymerase III su 98.1 7.8E-05 1.7E-09 80.6 15.2 196 150-358 17-238 (365)
110 PRK08691 DNA polymerase III su 98.1 3.6E-05 7.8E-10 87.8 13.1 190 152-357 16-219 (709)
111 PRK14958 DNA polymerase III su 98.1 4E-05 8.7E-10 86.6 13.5 180 152-356 16-218 (509)
112 COG2884 FtsE Predicted ATPase 98.0 3.4E-05 7.4E-10 71.9 10.3 129 171-303 26-204 (223)
113 COG1121 ZnuC ABC-type Mn/Zn tr 98.0 2.3E-05 5.1E-10 78.3 9.8 130 171-300 28-203 (254)
114 PF12799 LRR_4: Leucine Rich r 98.0 5E-06 1.1E-10 59.1 3.6 39 564-603 2-40 (44)
115 COG1136 SalX ABC-type antimicr 98.0 1.3E-05 2.9E-10 78.8 7.7 130 171-302 29-209 (226)
116 PRK14955 DNA polymerase III su 98.0 5.7E-05 1.2E-09 83.5 13.4 197 152-356 16-226 (397)
117 PRK14087 dnaA chromosomal repl 98.0 5.8E-05 1.3E-09 84.3 13.3 168 174-361 142-322 (450)
118 PRK14969 DNA polymerase III su 98.0 6.1E-05 1.3E-09 85.8 13.6 174 152-355 16-217 (527)
119 COG2255 RuvB Holliday junction 98.0 0.00013 2.8E-09 72.6 13.4 173 152-360 26-225 (332)
120 PRK14970 DNA polymerase III su 98.0 0.00011 2.5E-09 80.8 14.8 179 152-355 17-206 (367)
121 PRK09111 DNA polymerase III su 98.0 0.00011 2.4E-09 84.3 14.9 196 152-358 24-233 (598)
122 KOG2982 Uncharacterized conser 98.0 2.6E-06 5.7E-11 84.3 1.3 87 534-621 68-157 (418)
123 PRK14952 DNA polymerase III su 97.9 0.00013 2.8E-09 83.3 15.0 197 152-363 13-225 (584)
124 PF05621 TniB: Bacterial TniB 97.9 0.0002 4.3E-09 73.3 14.6 191 160-355 45-258 (302)
125 PRK03992 proteasome-activating 97.9 0.00023 5E-09 78.3 16.4 173 152-352 131-337 (389)
126 PRK07764 DNA polymerase III su 97.9 0.00011 2.3E-09 87.5 14.6 188 152-355 15-218 (824)
127 PF12799 LRR_4: Leucine Rich r 97.9 9.5E-06 2.1E-10 57.7 3.5 41 587-628 1-41 (44)
128 PRK14959 DNA polymerase III su 97.9 0.00011 2.4E-09 83.5 13.7 196 152-362 16-225 (624)
129 PRK14954 DNA polymerase III su 97.9 0.00019 4E-09 82.6 15.5 199 152-358 16-229 (620)
130 PRK14088 dnaA chromosomal repl 97.9 0.00011 2.4E-09 82.0 13.4 160 173-356 130-303 (440)
131 KOG2227 Pre-initiation complex 97.9 0.00058 1.2E-08 72.8 17.6 173 150-329 148-341 (529)
132 PTZ00361 26 proteosome regulat 97.9 0.00012 2.6E-09 80.7 13.3 173 153-352 184-389 (438)
133 PRK06620 hypothetical protein; 97.9 7.3E-05 1.6E-09 74.7 10.6 136 174-356 45-187 (214)
134 TIGR00678 holB DNA polymerase 97.9 0.00018 4E-09 70.8 13.4 160 163-354 3-187 (188)
135 PRK07133 DNA polymerase III su 97.9 0.00018 4E-09 83.0 14.6 188 152-359 18-221 (725)
136 TIGR02881 spore_V_K stage V sp 97.9 0.00015 3.2E-09 75.5 12.5 45 153-197 7-66 (261)
137 KOG2543 Origin recognition com 97.9 0.00023 4.9E-09 73.8 13.3 169 152-326 6-193 (438)
138 PRK15386 type III secretion pr 97.8 4E-05 8.6E-10 82.1 8.0 61 562-628 51-112 (426)
139 CHL00181 cbbX CbbX; Provisiona 97.8 0.00032 7E-09 73.5 14.7 158 153-329 24-212 (287)
140 PRK14953 DNA polymerase III su 97.8 0.00032 6.9E-09 78.9 15.5 191 152-358 16-220 (486)
141 TIGR03345 VI_ClpV1 type VI sec 97.8 0.00023 5E-09 85.8 15.0 155 152-326 187-363 (852)
142 KOG0989 Replication factor C, 97.8 9.7E-05 2.1E-09 74.3 9.7 181 152-352 36-224 (346)
143 PRK14971 DNA polymerase III su 97.8 0.00035 7.7E-09 80.9 15.8 178 152-355 17-219 (614)
144 cd03222 ABC_RNaseL_inhibitor T 97.8 8.4E-05 1.8E-09 71.6 9.0 112 171-302 23-138 (177)
145 PRK11331 5-methylcytosine-spec 97.8 0.00015 3.2E-09 78.8 11.7 108 152-267 175-284 (459)
146 PRK15386 type III secretion pr 97.8 7.5E-05 1.6E-09 80.1 9.3 58 583-646 48-105 (426)
147 PHA02544 44 clamp loader, smal 97.8 0.00024 5.3E-09 76.5 13.4 148 152-324 21-171 (316)
148 KOG1859 Leucine-rich repeat pr 97.8 1.1E-06 2.4E-11 96.8 -4.7 130 510-648 161-292 (1096)
149 cd03238 ABC_UvrA The excision 97.8 0.00013 2.7E-09 70.3 9.7 128 171-310 19-161 (176)
150 TIGR02880 cbbX_cfxQ probable R 97.8 0.00046 9.9E-09 72.4 14.8 156 154-328 24-210 (284)
151 TIGR00362 DnaA chromosomal rep 97.8 0.00026 5.7E-09 78.9 13.7 160 173-356 136-308 (405)
152 cd03247 ABCC_cytochrome_bd The 97.8 0.00012 2.5E-09 71.5 9.6 130 171-310 26-169 (178)
153 PRK06305 DNA polymerase III su 97.8 0.00044 9.6E-09 77.3 15.2 187 152-354 17-218 (451)
154 PRK00149 dnaA chromosomal repl 97.8 0.00031 6.7E-09 79.4 14.1 160 173-356 148-320 (450)
155 cd03223 ABCD_peroxisomal_ALDP 97.8 0.00013 2.8E-09 70.1 9.5 129 171-310 25-160 (166)
156 PRK14950 DNA polymerase III su 97.8 0.00047 1E-08 80.2 15.7 193 152-358 16-221 (585)
157 PTZ00454 26S protease regulato 97.8 0.00029 6.2E-09 77.2 13.1 175 152-353 145-352 (398)
158 COG1120 FepC ABC-type cobalami 97.8 9.8E-05 2.1E-09 74.4 8.7 133 171-303 26-206 (258)
159 PF14516 AAA_35: AAA-like doma 97.8 0.0014 3.1E-08 70.5 18.3 204 151-365 10-246 (331)
160 PRK08451 DNA polymerase III su 97.8 0.00049 1.1E-08 77.4 15.1 193 152-358 14-218 (535)
161 cd03214 ABC_Iron-Siderophores_ 97.7 0.00012 2.6E-09 71.5 9.1 126 171-301 23-163 (180)
162 PRK14948 DNA polymerase III su 97.7 0.0006 1.3E-08 79.0 16.1 193 152-357 16-221 (620)
163 cd03216 ABC_Carb_Monos_I This 97.7 6.9E-05 1.5E-09 71.7 6.9 121 171-301 24-147 (163)
164 cd03228 ABCC_MRP_Like The MRP 97.7 0.00016 3.6E-09 69.9 9.3 129 171-310 26-167 (171)
165 cd03230 ABC_DR_subfamily_A Thi 97.7 0.00015 3.3E-09 70.3 8.9 124 171-301 24-160 (173)
166 TIGR02639 ClpA ATP-dependent C 97.7 0.00018 3.8E-09 86.1 11.1 155 152-326 182-358 (731)
167 PRK12422 chromosomal replicati 97.7 0.00048 1E-08 76.7 13.6 152 174-351 142-306 (445)
168 cd03246 ABCC_Protease_Secretio 97.7 0.00012 2.6E-09 71.0 7.9 130 171-310 26-168 (173)
169 COG4608 AppF ABC-type oligopep 97.7 0.00016 3.5E-09 72.4 8.4 130 171-304 37-178 (268)
170 COG1124 DppF ABC-type dipeptid 97.7 0.00018 4E-09 70.3 8.5 134 171-304 31-210 (252)
171 PRK14086 dnaA chromosomal repl 97.6 0.00061 1.3E-08 77.2 13.8 158 174-355 315-485 (617)
172 COG1116 TauB ABC-type nitrate/ 97.6 0.00016 3.4E-09 71.4 8.0 132 171-302 27-197 (248)
173 PRK14965 DNA polymerase III su 97.6 0.00054 1.2E-08 79.2 13.7 194 152-360 16-223 (576)
174 COG0396 sufC Cysteine desulfur 97.6 0.00026 5.6E-09 68.5 9.1 138 171-308 28-216 (251)
175 PRK13539 cytochrome c biogenes 97.6 9.9E-05 2.1E-09 73.9 6.7 140 171-313 26-201 (207)
176 COG3267 ExeA Type II secretory 97.6 0.0023 5E-08 63.2 15.7 185 171-360 49-247 (269)
177 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.6 0.00023 4.9E-09 66.5 8.5 108 171-301 24-132 (144)
178 CHL00095 clpC Clp protease ATP 97.6 0.00039 8.4E-09 84.3 12.6 155 152-325 179-353 (821)
179 PRK06647 DNA polymerase III su 97.6 0.0011 2.3E-08 76.1 15.3 192 152-357 16-219 (563)
180 smart00382 AAA ATPases associa 97.6 0.00024 5.2E-09 66.2 8.7 90 173-269 2-92 (148)
181 PF10443 RNA12: RNA12 protein; 97.6 0.0027 5.9E-08 68.1 17.2 200 157-368 1-288 (431)
182 KOG4579 Leucine-rich repeat (L 97.6 6.7E-06 1.5E-10 72.1 -2.1 83 542-628 58-140 (177)
183 cd03269 ABC_putative_ATPase Th 97.6 0.00035 7.6E-09 70.2 9.9 131 171-301 24-193 (210)
184 KOG3665 ZYG-1-like serine/thre 97.6 1.3E-05 2.8E-10 93.5 -0.6 133 514-649 123-264 (699)
185 COG0488 Uup ATPase components 97.6 0.00029 6.3E-09 79.5 10.1 134 171-311 27-224 (530)
186 KOG3665 ZYG-1-like serine/thre 97.6 4.8E-05 1E-09 88.8 3.7 109 537-647 122-232 (699)
187 PRK13543 cytochrome c biogenes 97.6 0.00055 1.2E-08 69.0 10.9 132 171-302 35-203 (214)
188 TIGR01241 FtsH_fam ATP-depende 97.6 0.0022 4.8E-08 73.4 17.1 174 152-352 55-260 (495)
189 cd03225 ABC_cobalt_CbiO_domain 97.6 0.00053 1.1E-08 69.0 10.8 132 171-302 25-200 (211)
190 PRK05563 DNA polymerase III su 97.5 0.0015 3.2E-08 75.2 15.6 190 152-356 16-218 (559)
191 PF05673 DUF815: Protein of un 97.5 0.0047 1E-07 61.4 16.8 51 149-199 24-78 (249)
192 cd03217 ABC_FeS_Assembly ABC-t 97.5 0.00035 7.6E-09 69.5 9.0 124 171-301 24-169 (200)
193 COG1131 CcmA ABC-type multidru 97.5 0.00025 5.5E-09 74.6 8.3 132 171-302 29-203 (293)
194 cd03235 ABC_Metallic_Cations A 97.5 0.00059 1.3E-08 68.8 10.7 132 171-302 23-198 (213)
195 PRK07399 DNA polymerase III su 97.5 0.0022 4.8E-08 68.1 15.2 194 152-357 4-220 (314)
196 cd03226 ABC_cobalt_CbiO_domain 97.5 0.00054 1.2E-08 68.6 10.1 131 171-301 24-191 (205)
197 cd03229 ABC_Class3 This class 97.5 0.0002 4.4E-09 69.7 6.8 127 171-301 24-166 (178)
198 TIGR00960 3a0501s02 Type II (G 97.5 0.00057 1.2E-08 69.0 10.3 132 171-302 27-204 (216)
199 TIGR01188 drrA daunorubicin re 97.5 0.00051 1.1E-08 73.2 10.2 130 171-302 17-190 (302)
200 cd03237 ABC_RNaseL_inhibitor_d 97.5 0.00054 1.2E-08 70.4 9.9 131 172-302 24-182 (246)
201 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.5 0.00053 1.1E-08 69.4 9.7 130 171-300 28-205 (218)
202 TIGR03771 anch_rpt_ABC anchore 97.5 0.00071 1.5E-08 68.6 10.5 131 171-301 4-178 (223)
203 PRK10865 protein disaggregatio 97.5 0.00094 2E-08 80.9 13.2 155 152-326 178-354 (857)
204 PRK09580 sufC cysteine desulfu 97.5 0.00071 1.5E-08 70.1 10.7 61 241-301 149-210 (248)
205 TIGR00763 lon ATP-dependent pr 97.5 0.0029 6.2E-08 76.4 17.1 46 152-197 320-371 (775)
206 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 97.5 0.00066 1.4E-08 68.9 10.0 132 171-302 46-208 (224)
207 TIGR01166 cbiO cobalt transpor 97.4 0.00031 6.8E-09 69.3 7.4 127 171-297 16-188 (190)
208 PRK13538 cytochrome c biogenes 97.4 0.00093 2E-08 66.8 10.9 133 171-303 25-196 (204)
209 cd03265 ABC_DrrA DrrA is the A 97.4 0.00097 2.1E-08 67.6 11.2 129 171-301 24-197 (220)
210 TIGR02324 CP_lyasePhnL phospho 97.4 0.0011 2.3E-08 67.5 11.5 130 171-302 32-215 (224)
211 cd03263 ABC_subfamily_A The AB 97.4 0.00066 1.4E-08 68.8 9.9 130 171-301 26-197 (220)
212 cd03266 ABC_NatA_sodium_export 97.4 0.00078 1.7E-08 68.2 10.5 131 171-301 29-201 (218)
213 PRK09544 znuC high-affinity zi 97.4 0.0006 1.3E-08 70.3 9.6 132 171-302 28-187 (251)
214 cd03250 ABCC_MRP_domain1 Domai 97.4 0.0016 3.5E-08 65.1 12.5 137 171-310 29-200 (204)
215 PRK11248 tauB taurine transpor 97.4 0.00089 1.9E-08 69.4 10.8 130 171-302 25-195 (255)
216 KOG2123 Uncharacterized conser 97.4 1.4E-05 3.1E-10 78.5 -2.4 101 535-641 17-123 (388)
217 TIGR00602 rad24 checkpoint pro 97.4 0.00093 2E-08 76.9 11.7 47 151-197 83-134 (637)
218 PRK11247 ssuB aliphatic sulfon 97.4 0.00095 2.1E-08 69.1 10.8 131 171-301 36-199 (257)
219 cd03259 ABC_Carb_Solutes_like 97.4 0.00058 1.3E-08 68.8 9.1 129 171-301 24-196 (213)
220 PRK11034 clpA ATP-dependent Cl 97.4 0.0015 3.3E-08 77.2 13.8 156 152-326 186-362 (758)
221 COG4618 ArpD ABC-type protease 97.4 0.00087 1.9E-08 72.2 10.5 131 171-301 360-537 (580)
222 PRK13537 nodulation ABC transp 97.4 0.00088 1.9E-08 71.3 10.7 132 171-302 31-204 (306)
223 cd03268 ABC_BcrA_bacitracin_re 97.4 0.00081 1.8E-08 67.5 9.9 129 171-301 24-191 (208)
224 cd03293 ABC_NrtD_SsuB_transpor 97.4 0.00097 2.1E-08 67.5 10.5 131 171-301 28-197 (220)
225 TIGR03740 galliderm_ABC gallid 97.4 0.0011 2.3E-08 67.4 10.8 129 171-301 24-189 (223)
226 TIGR03346 chaperone_ClpB ATP-d 97.4 0.0011 2.4E-08 80.6 12.7 154 152-326 173-349 (852)
227 TIGR03689 pup_AAA proteasome A 97.4 0.0016 3.4E-08 73.0 12.7 161 152-328 182-380 (512)
228 PRK13647 cbiO cobalt transport 97.4 0.00076 1.6E-08 70.7 9.8 129 171-301 29-203 (274)
229 KOG1644 U2-associated snRNP A' 97.4 7.5E-05 1.6E-09 70.4 1.9 104 538-647 43-152 (233)
230 cd00267 ABC_ATPase ABC (ATP-bi 97.4 0.00039 8.4E-09 66.2 6.9 121 171-302 23-146 (157)
231 cd03258 ABC_MetN_methionine_tr 97.4 0.00076 1.6E-08 69.1 9.5 131 171-301 29-206 (233)
232 TIGR03608 L_ocin_972_ABC putat 97.4 0.00087 1.9E-08 67.2 9.7 130 171-300 22-198 (206)
233 PRK15056 manganese/iron transp 97.4 0.0013 2.7E-08 69.1 11.3 130 171-302 31-208 (272)
234 cd03292 ABC_FtsE_transporter F 97.4 0.00081 1.8E-08 67.8 9.5 131 171-301 25-201 (214)
235 cd03261 ABC_Org_Solvent_Resist 97.4 0.00093 2E-08 68.5 10.0 131 171-301 24-202 (235)
236 PRK10787 DNA-binding ATP-depen 97.4 0.0037 8E-08 74.7 16.2 46 152-197 322-373 (784)
237 PRK11264 putative amino-acid A 97.4 0.0012 2.7E-08 68.3 10.9 131 171-301 27-209 (250)
238 TIGR02673 FtsE cell division A 97.4 0.00097 2.1E-08 67.3 9.9 131 171-301 26-202 (214)
239 cd03215 ABC_Carb_Monos_II This 97.4 0.0011 2.3E-08 64.9 9.8 120 171-301 24-169 (182)
240 TIGR03522 GldA_ABC_ATP gliding 97.4 0.0012 2.5E-08 70.4 10.8 130 171-301 26-197 (301)
241 cd03264 ABC_drug_resistance_li 97.4 0.0011 2.4E-08 66.7 10.2 128 172-301 25-194 (211)
242 PRK08116 hypothetical protein; 97.4 0.00038 8.3E-09 72.2 6.9 106 173-296 114-221 (268)
243 COG1373 Predicted ATPase (AAA+ 97.3 0.0031 6.6E-08 69.5 14.3 136 157-322 22-163 (398)
244 KOG4579 Leucine-rich repeat (L 97.3 8.7E-05 1.9E-09 65.3 1.7 89 514-606 54-142 (177)
245 PRK15064 ABC transporter ATP-b 97.3 0.0011 2.4E-08 76.8 11.5 130 171-302 25-218 (530)
246 TIGR03864 PQQ_ABC_ATP ABC tran 97.3 0.00095 2.1E-08 68.4 9.7 138 171-310 25-205 (236)
247 cd03301 ABC_MalK_N The N-termi 97.3 0.001 2.2E-08 67.1 9.8 131 171-301 24-196 (213)
248 cd03369 ABCC_NFT1 Domain 2 of 97.3 0.0014 3E-08 65.7 10.6 135 171-310 32-196 (207)
249 COG0488 Uup ATPase components 97.3 0.0012 2.7E-08 74.5 11.1 138 171-311 346-510 (530)
250 PRK10247 putative ABC transpor 97.3 0.0013 2.9E-08 66.7 10.5 136 171-310 31-210 (225)
251 cd03218 ABC_YhbG The ABC trans 97.3 0.0012 2.7E-08 67.5 10.3 131 171-301 24-198 (232)
252 TIGR02211 LolD_lipo_ex lipopro 97.3 0.0013 2.8E-08 66.8 10.4 138 171-310 29-214 (221)
253 PRK08118 topology modulation p 97.3 0.00014 3E-09 69.7 3.0 36 174-209 2-37 (167)
254 COG1222 RPT1 ATP-dependent 26S 97.3 0.0055 1.2E-07 63.4 14.5 195 154-378 153-392 (406)
255 PRK13409 putative ATPase RIL; 97.3 0.00093 2E-08 77.6 10.3 132 171-303 97-278 (590)
256 COG0593 DnaA ATPase involved i 97.3 0.002 4.3E-08 69.5 11.9 141 172-335 112-266 (408)
257 PRK10584 putative ABC transpor 97.3 0.0013 2.7E-08 67.2 10.1 138 171-310 34-219 (228)
258 cd03236 ABC_RNaseL_inhibitor_d 97.3 0.0013 2.7E-08 68.0 10.1 132 171-302 24-205 (255)
259 COG5238 RNA1 Ran GTPase-activa 97.3 4.7E-05 1E-09 74.7 -0.5 87 560-647 27-132 (388)
260 cd03213 ABCG_EPDR ABCG transpo 97.3 0.00084 1.8E-08 66.4 8.4 121 171-297 33-172 (194)
261 PRK13540 cytochrome c biogenes 97.3 0.00086 1.9E-08 66.7 8.5 131 171-301 25-192 (200)
262 COG3840 ThiQ ABC-type thiamine 97.3 0.0013 2.9E-08 61.0 8.8 127 171-301 23-195 (231)
263 PRK11629 lolD lipoprotein tran 97.3 0.0014 3E-08 67.1 10.2 132 171-302 33-212 (233)
264 cd03231 ABC_CcmA_heme_exporter 97.3 0.0011 2.3E-08 66.1 9.1 127 171-297 24-186 (201)
265 TIGR01189 ccmA heme ABC export 97.3 0.00082 1.8E-08 66.8 8.3 124 171-296 24-187 (198)
266 TIGR01288 nodI ATP-binding ABC 97.3 0.0016 3.5E-08 69.4 11.0 132 171-302 28-201 (303)
267 PRK10908 cell division protein 97.3 0.0014 3.1E-08 66.5 10.1 130 171-302 26-203 (222)
268 cd03267 ABC_NatA_like Similar 97.3 0.0016 3.5E-08 66.6 10.6 131 171-302 45-220 (236)
269 cd03297 ABC_ModC_molybdenum_tr 97.3 0.0012 2.5E-08 66.7 9.4 128 171-301 22-197 (214)
270 cd03244 ABCC_MRP_domain2 Domai 97.3 0.0012 2.6E-08 67.0 9.5 66 242-310 144-210 (221)
271 PRK13651 cobalt transporter AT 97.3 0.0016 3.5E-08 69.2 10.7 61 241-301 169-230 (305)
272 PRK13536 nodulation factor exp 97.3 0.0016 3.5E-08 70.2 10.8 132 171-302 65-238 (340)
273 cd03296 ABC_CysA_sulfate_impor 97.3 0.0012 2.5E-08 68.0 9.4 131 171-301 26-202 (239)
274 PRK13649 cbiO cobalt transport 97.3 0.0014 3E-08 69.1 10.2 132 171-302 31-211 (280)
275 PRK14250 phosphate ABC transpo 97.3 0.002 4.2E-08 66.3 11.0 129 171-301 27-197 (241)
276 PRK11124 artP arginine transpo 97.3 0.0018 3.8E-08 66.7 10.8 129 171-301 26-206 (242)
277 CHL00131 ycf16 sulfate ABC tra 97.3 0.0021 4.5E-08 66.7 11.3 129 171-301 31-216 (252)
278 cd03219 ABC_Mj1267_LivG_branch 97.3 0.0015 3.2E-08 67.1 10.0 132 171-302 24-209 (236)
279 cd03232 ABC_PDR_domain2 The pl 97.3 0.001 2.2E-08 65.8 8.4 121 171-297 31-169 (192)
280 TIGR01277 thiQ thiamine ABC tr 97.2 0.0017 3.8E-08 65.3 10.2 130 171-300 22-193 (213)
281 cd03245 ABCC_bacteriocin_expor 97.2 0.0018 3.9E-08 65.6 10.4 127 171-300 28-203 (220)
282 COG1117 PstB ABC-type phosphat 97.2 0.0012 2.6E-08 63.1 8.2 64 241-305 153-217 (253)
283 PRK10418 nikD nickel transport 97.2 0.002 4.4E-08 66.8 10.9 130 171-300 27-205 (254)
284 COG1122 CbiO ABC-type cobalt t 97.2 0.0015 3.2E-08 65.9 9.4 131 171-301 28-204 (235)
285 PRK10619 histidine/lysine/argi 97.2 0.0015 3.2E-08 68.0 9.9 129 171-301 29-217 (257)
286 cd03256 ABC_PhnC_transporter A 97.2 0.0018 3.8E-08 66.8 10.4 132 171-302 25-211 (241)
287 cd03254 ABCC_Glucan_exporter_l 97.2 0.0016 3.5E-08 66.5 9.9 66 242-310 144-210 (229)
288 COG1135 AbcC ABC-type metal io 97.2 0.001 2.2E-08 67.4 8.0 133 171-303 30-209 (339)
289 KOG1644 U2-associated snRNP A' 97.2 0.00022 4.8E-09 67.3 3.1 107 563-678 42-150 (233)
290 TIGR01978 sufC FeS assembly AT 97.2 0.002 4.3E-08 66.4 10.6 130 171-302 24-210 (243)
291 TIGR02314 ABC_MetN D-methionin 97.2 0.0015 3.3E-08 70.3 9.9 130 171-302 29-207 (343)
292 PRK13545 tagH teichoic acids e 97.2 0.0021 4.6E-08 71.6 11.2 131 171-301 48-208 (549)
293 TIGR01184 ntrCD nitrate transp 97.2 0.00095 2.1E-08 68.0 8.0 129 171-301 9-180 (230)
294 PRK15093 antimicrobial peptide 97.2 0.0025 5.4E-08 68.7 11.6 130 171-302 31-225 (330)
295 TIGR02770 nickel_nikD nickel i 97.2 0.0021 4.5E-08 65.6 10.5 131 171-301 10-191 (230)
296 PRK13541 cytochrome c biogenes 97.2 0.0013 2.8E-08 65.2 8.7 127 171-299 24-186 (195)
297 PRK11300 livG leucine/isoleuci 97.2 0.0015 3.4E-08 67.8 9.7 61 241-301 157-219 (255)
298 PRK13648 cbiO cobalt transport 97.2 0.0018 3.9E-08 67.8 10.3 138 171-310 33-215 (269)
299 PRK05707 DNA polymerase III su 97.2 0.003 6.5E-08 67.5 11.9 95 254-358 105-203 (328)
300 PRK12608 transcription termina 97.2 0.002 4.3E-08 68.6 10.3 104 161-266 120-231 (380)
301 CHL00176 ftsH cell division pr 97.2 0.003 6.6E-08 73.3 12.8 173 152-351 183-387 (638)
302 TIGR02315 ABC_phnC phosphonate 97.2 0.0018 3.9E-08 66.8 10.0 129 171-301 26-211 (243)
303 PRK13650 cbiO cobalt transport 97.2 0.00055 1.2E-08 72.0 6.2 128 171-300 31-205 (279)
304 PRK11153 metN DL-methionine tr 97.2 0.0016 3.4E-08 70.5 9.9 132 171-302 29-207 (343)
305 PRK13643 cbiO cobalt transport 97.2 0.0028 6E-08 67.0 11.5 129 171-301 30-209 (288)
306 PRK11701 phnK phosphonate C-P 97.2 0.0019 4.1E-08 67.3 10.1 131 171-301 30-217 (258)
307 PRK08181 transposase; Validate 97.2 0.017 3.7E-07 59.6 16.8 78 166-266 101-178 (269)
308 cd03262 ABC_HisP_GlnQ_permease 97.2 0.0028 6E-08 63.9 11.0 131 171-301 24-200 (213)
309 cd03298 ABC_ThiQ_thiamine_tran 97.2 0.0017 3.8E-08 65.2 9.5 129 171-301 22-194 (211)
310 cd03294 ABC_Pro_Gly_Bertaine T 97.2 0.0021 4.6E-08 67.2 10.4 131 171-301 48-226 (269)
311 PRK13409 putative ATPase RIL; 97.2 0.0012 2.7E-08 76.6 9.5 138 171-311 363-528 (590)
312 COG4133 CcmA ABC-type transpor 97.2 0.00055 1.2E-08 64.0 5.2 123 171-296 26-190 (209)
313 cd03283 ABC_MutS-like MutS-lik 97.2 0.0016 3.5E-08 64.3 9.0 114 173-302 25-154 (199)
314 cd03295 ABC_OpuCA_Osmoprotecti 97.2 0.0019 4.2E-08 66.4 9.9 129 171-301 25-201 (242)
315 cd03224 ABC_TM1139_LivF_branch 97.2 0.00088 1.9E-08 68.0 7.2 131 171-301 24-197 (222)
316 PRK13644 cbiO cobalt transport 97.2 0.0026 5.7E-08 66.7 10.9 138 171-310 26-208 (274)
317 PRK13638 cbiO cobalt transport 97.2 0.0022 4.8E-08 67.2 10.4 131 171-301 25-201 (271)
318 PRK13641 cbiO cobalt transport 97.2 0.0031 6.7E-08 66.7 11.5 132 171-302 31-211 (287)
319 PRK13546 teichoic acids export 97.2 0.0021 4.6E-08 66.7 10.1 132 171-302 48-209 (264)
320 PRK15439 autoinducer 2 ABC tra 97.2 0.002 4.3E-08 74.3 10.8 131 171-301 35-205 (510)
321 PRK11650 ugpC glycerol-3-phosp 97.2 0.002 4.3E-08 69.9 10.1 130 171-302 28-201 (356)
322 PRK12377 putative replication 97.2 0.0015 3.3E-08 66.4 8.7 76 172-267 100-175 (248)
323 PRK09493 glnQ glutamine ABC tr 97.1 0.0024 5.3E-08 65.6 10.3 132 171-302 25-202 (240)
324 KOG0733 Nuclear AAA ATPase (VC 97.1 0.0044 9.6E-08 68.2 12.3 171 152-351 190-395 (802)
325 PRK14269 phosphate ABC transpo 97.1 0.0038 8.2E-08 64.4 11.7 128 171-301 26-206 (246)
326 cd03290 ABCC_SUR1_N The SUR do 97.1 0.0042 9.2E-08 62.8 11.8 67 242-310 145-214 (218)
327 PRK07261 topology modulation p 97.1 0.0016 3.5E-08 62.7 8.2 67 175-266 2-68 (171)
328 cd03253 ABCC_ATM1_transporter 97.1 0.0021 4.5E-08 66.0 9.7 66 242-310 142-208 (236)
329 PRK10636 putative ABC transpor 97.1 0.0023 5E-08 75.5 11.2 60 241-302 153-212 (638)
330 KOG1514 Origin recognition com 97.1 0.015 3.2E-07 65.5 16.5 202 153-362 397-625 (767)
331 TIGR02142 modC_ABC molybdenum 97.1 0.0025 5.4E-08 69.4 10.7 130 171-302 21-198 (354)
332 PRK11147 ABC transporter ATPas 97.1 0.0026 5.5E-08 75.3 11.6 59 241-302 160-219 (635)
333 PRK13646 cbiO cobalt transport 97.1 0.0034 7.4E-08 66.3 11.3 131 171-301 31-211 (286)
334 PRK10536 hypothetical protein; 97.1 0.0032 7E-08 63.4 10.3 55 152-209 55-109 (262)
335 PRK11144 modC molybdate transp 97.1 0.002 4.2E-08 70.1 9.6 130 171-302 22-195 (352)
336 PRK10938 putative molybdenum t 97.1 0.0024 5.1E-08 73.4 10.9 131 171-301 27-200 (490)
337 TIGR03411 urea_trans_UrtD urea 97.1 0.0031 6.8E-08 64.9 10.7 130 171-301 26-207 (242)
338 cd03249 ABC_MTABC3_MDL1_MDL2 M 97.1 0.002 4.2E-08 66.3 9.2 65 243-310 145-210 (238)
339 PRK11000 maltose/maltodextrin 97.1 0.0021 4.6E-08 70.3 9.8 130 171-302 27-200 (369)
340 TIGR02868 CydC thiol reductant 97.1 0.0014 3.1E-08 76.1 9.1 30 171-200 359-388 (529)
341 COG4555 NatA ABC-type Na+ tran 97.1 0.0024 5.2E-08 60.5 8.6 126 171-300 26-197 (245)
342 cd03251 ABCC_MsbA MsbA is an e 97.1 0.0025 5.5E-08 65.3 9.9 66 242-310 143-209 (234)
343 PRK13639 cbiO cobalt transport 97.1 0.0027 5.8E-08 66.7 10.3 131 171-301 26-202 (275)
344 PRK13631 cbiO cobalt transport 97.1 0.0039 8.4E-08 66.7 11.5 128 171-300 50-240 (320)
345 COG4181 Predicted ABC-type tra 97.1 0.007 1.5E-07 55.8 11.2 133 171-303 34-214 (228)
346 PRK10575 iron-hydroxamate tran 97.1 0.0033 7.2E-08 65.6 10.8 131 171-301 35-213 (265)
347 COG2274 SunT ABC-type bacterio 97.1 0.0029 6.3E-08 74.2 11.3 30 171-200 497-526 (709)
348 KOG0741 AAA+-type ATPase [Post 97.1 0.011 2.3E-07 64.1 14.3 159 172-362 537-716 (744)
349 PRK13634 cbiO cobalt transport 97.1 0.0023 5E-08 67.7 9.7 130 171-302 31-212 (290)
350 PRK10895 lipopolysaccharide AB 97.1 0.0026 5.6E-08 65.5 9.8 130 171-300 27-201 (241)
351 TIGR01069 mutS2 MutS2 family p 97.1 0.00035 7.6E-09 83.0 3.8 195 172-380 321-522 (771)
352 PRK14247 phosphate ABC transpo 97.1 0.0036 7.8E-08 64.8 11.0 59 242-301 151-210 (250)
353 PRK09536 btuD corrinoid ABC tr 97.1 0.0028 6.1E-08 69.6 10.4 130 171-302 27-205 (402)
354 PRK14254 phosphate ABC transpo 97.1 0.0056 1.2E-07 64.5 12.4 61 241-302 184-245 (285)
355 KOG2004 Mitochondrial ATP-depe 97.1 0.004 8.7E-08 69.8 11.3 101 151-266 410-516 (906)
356 COG4598 HisP ABC-type histidin 97.1 0.0029 6.3E-08 58.5 8.5 68 240-307 155-223 (256)
357 TIGR03873 F420-0_ABC_ATP propo 97.1 0.0037 8.1E-08 64.9 10.8 129 171-301 25-202 (256)
358 PRK13652 cbiO cobalt transport 97.1 0.0036 7.7E-08 65.8 10.8 129 171-301 28-203 (277)
359 PF00004 AAA: ATPase family as 97.1 0.00077 1.7E-08 62.0 5.1 22 176-197 1-22 (132)
360 cd03289 ABCC_CFTR2 The CFTR su 97.1 0.0031 6.8E-08 65.8 10.1 126 171-300 28-201 (275)
361 COG4988 CydD ABC-type transpor 97.0 0.0021 4.7E-08 71.1 9.0 133 171-303 345-522 (559)
362 PRK15177 Vi polysaccharide exp 97.0 0.0021 4.5E-08 64.6 8.4 32 171-202 11-42 (213)
363 TIGR03258 PhnT 2-aminoethylpho 97.0 0.0038 8.2E-08 67.8 11.0 130 171-302 29-205 (362)
364 cd03257 ABC_NikE_OppD_transpor 97.0 0.003 6.5E-08 64.4 9.7 131 171-301 29-211 (228)
365 PRK14259 phosphate ABC transpo 97.0 0.0042 9.2E-08 64.9 11.0 68 242-311 159-227 (269)
366 PRK10771 thiQ thiamine transpo 97.0 0.0027 5.9E-08 64.9 9.3 131 171-301 23-195 (232)
367 PRK13637 cbiO cobalt transport 97.0 0.0039 8.5E-08 65.8 10.7 131 171-301 31-210 (287)
368 PRK11432 fbpC ferric transport 97.0 0.0037 8.1E-08 67.6 10.8 130 171-302 30-203 (351)
369 TIGR02323 CP_lyasePhnK phospho 97.0 0.0037 7.9E-08 64.9 10.4 131 171-301 27-214 (253)
370 cd03252 ABCC_Hemolysin The ABC 97.0 0.004 8.7E-08 63.9 10.6 65 243-310 144-209 (237)
371 PRK13548 hmuV hemin importer A 97.0 0.0046 1E-07 64.2 11.1 131 171-301 26-206 (258)
372 PRK10636 putative ABC transpor 97.0 0.0038 8.2E-08 73.7 11.6 129 171-302 336-493 (638)
373 TIGR03005 ectoine_ehuA ectoine 97.0 0.0034 7.3E-08 65.1 9.9 130 171-300 24-211 (252)
374 cd03260 ABC_PstB_phosphate_tra 97.0 0.0039 8.4E-08 63.5 10.2 128 171-301 24-205 (227)
375 PRK11308 dppF dipeptide transp 97.0 0.0026 5.7E-08 68.2 9.3 130 171-302 39-221 (327)
376 PRK15439 autoinducer 2 ABC tra 97.0 0.0028 6.1E-08 73.0 10.2 130 171-302 287-469 (510)
377 cd03285 ABC_MSH2_euk MutS2 hom 97.0 0.00034 7.3E-09 70.4 2.3 179 171-364 28-219 (222)
378 PRK11231 fecE iron-dicitrate t 97.0 0.0053 1.1E-07 63.8 11.3 131 171-301 26-203 (255)
379 KOG0991 Replication factor C, 97.0 0.0019 4.2E-08 62.2 7.1 47 152-198 27-73 (333)
380 PRK13635 cbiO cobalt transport 97.0 0.0018 3.9E-08 68.1 7.8 128 171-300 31-205 (279)
381 TIGR00968 3a0106s01 sulfate AB 97.0 0.0037 8.1E-08 64.1 10.0 131 171-301 24-196 (237)
382 smart00763 AAA_PrkA PrkA AAA d 97.0 0.003 6.5E-08 66.9 9.3 46 153-198 52-103 (361)
383 cd03300 ABC_PotA_N PotA is an 97.0 0.0034 7.3E-08 64.2 9.6 130 171-300 24-195 (232)
384 PRK14264 phosphate ABC transpo 97.0 0.0052 1.1E-07 65.5 11.3 60 242-302 205-265 (305)
385 TIGR01243 CDC48 AAA family ATP 97.0 0.0086 1.9E-07 72.1 14.5 176 152-354 178-383 (733)
386 TIGR03265 PhnT2 putative 2-ami 97.0 0.0043 9.4E-08 67.2 10.8 131 171-303 28-202 (353)
387 PRK10762 D-ribose transporter 97.0 0.0033 7.1E-08 72.4 10.5 132 171-302 28-207 (501)
388 PRK14235 phosphate transporter 97.0 0.0047 1E-07 64.6 10.7 59 242-301 168-227 (267)
389 TIGR03410 urea_trans_UrtE urea 97.0 0.0028 6.1E-08 64.7 8.9 131 171-301 24-197 (230)
390 PRK12727 flagellar biosynthesi 97.0 0.023 5E-07 63.3 16.3 90 172-266 349-439 (559)
391 cd03299 ABC_ModC_like Archeal 97.0 0.0036 7.9E-08 64.0 9.7 131 171-301 23-195 (235)
392 TIGR00972 3a0107s01c2 phosphat 97.0 0.0046 1E-07 63.9 10.5 128 171-301 25-208 (247)
393 PRK14242 phosphate transporter 97.0 0.0049 1.1E-07 63.9 10.7 59 242-301 154-213 (253)
394 PRK11831 putative ABC transpor 97.0 0.0042 9E-08 65.0 10.2 131 171-301 31-209 (269)
395 PRK11022 dppD dipeptide transp 97.0 0.0045 9.7E-08 66.5 10.6 132 171-302 31-220 (326)
396 PRK11819 putative ABC transpor 97.0 0.0045 9.7E-08 72.1 11.4 58 242-302 168-226 (556)
397 PRK13632 cbiO cobalt transport 97.0 0.004 8.6E-08 65.3 10.0 130 171-300 33-207 (271)
398 cd03248 ABCC_TAP TAP, the Tran 97.0 0.0052 1.1E-07 62.5 10.6 135 171-310 38-221 (226)
399 PRK15112 antimicrobial peptide 97.0 0.0036 7.7E-08 65.5 9.5 131 171-301 37-215 (267)
400 PRK13657 cyclic beta-1,2-gluca 97.0 0.0027 5.8E-08 74.8 9.6 136 171-310 359-542 (588)
401 COG1118 CysA ABC-type sulfate/ 97.0 0.003 6.6E-08 64.0 8.4 131 171-301 26-203 (345)
402 PRK14275 phosphate ABC transpo 96.9 0.0055 1.2E-07 64.7 10.9 59 242-301 187-246 (286)
403 PRK04296 thymidine kinase; Pro 96.9 0.00096 2.1E-08 65.6 4.7 116 173-297 2-117 (190)
404 COG0466 Lon ATP-dependent Lon 96.9 0.0029 6.4E-08 71.2 8.9 160 152-326 323-508 (782)
405 PRK09452 potA putrescine/sperm 96.9 0.0042 9.2E-08 67.7 10.1 130 171-302 38-211 (375)
406 PRK14273 phosphate ABC transpo 96.9 0.0067 1.4E-07 63.0 11.3 60 242-302 155-215 (254)
407 PRK13640 cbiO cobalt transport 96.9 0.0031 6.7E-08 66.4 8.8 138 171-310 31-216 (282)
408 TIGR02769 nickel_nikE nickel i 96.9 0.0058 1.2E-07 63.8 10.7 131 171-301 35-216 (265)
409 PRK09700 D-allose transporter 96.9 0.0048 1E-07 71.3 11.1 132 171-302 29-211 (510)
410 PRK10419 nikE nickel transport 96.9 0.0047 1E-07 64.6 10.0 131 171-301 36-217 (268)
411 PRK14246 phosphate ABC transpo 96.9 0.005 1.1E-07 63.9 10.1 59 242-301 158-217 (257)
412 PRK13645 cbiO cobalt transport 96.9 0.0055 1.2E-07 64.9 10.5 131 171-301 35-216 (289)
413 PRK13636 cbiO cobalt transport 96.9 0.0041 8.8E-08 65.6 9.5 131 171-301 30-207 (283)
414 TIGR01243 CDC48 AAA family ATP 96.9 0.019 4.1E-07 69.2 16.3 174 152-352 453-657 (733)
415 COG1123 ATPase components of v 96.9 0.0048 1E-07 68.6 10.2 134 171-304 33-223 (539)
416 PRK10744 pstB phosphate transp 96.9 0.0067 1.5E-07 63.2 11.0 60 241-301 160-220 (260)
417 COG1119 ModF ABC-type molybden 96.9 0.0027 5.9E-08 62.4 7.3 102 171-272 55-206 (257)
418 PRK15064 ABC transporter ATP-b 96.9 0.005 1.1E-07 71.4 11.0 129 171-302 343-501 (530)
419 KOG0927 Predicted transporter 96.9 0.0019 4E-08 70.3 6.6 58 243-302 227-285 (614)
420 PRK11607 potG putrescine trans 96.9 0.0064 1.4E-07 66.5 11.0 131 171-303 43-217 (377)
421 PRK10070 glycine betaine trans 96.9 0.0051 1.1E-07 67.5 10.2 132 171-302 52-231 (400)
422 PRK10762 D-ribose transporter 96.9 0.004 8.7E-08 71.7 10.0 132 171-302 276-461 (501)
423 PRK10851 sulfate/thiosulfate t 96.9 0.0028 6E-08 68.7 8.1 131 171-303 26-204 (353)
424 PF04665 Pox_A32: Poxvirus A32 96.9 0.002 4.3E-08 64.6 6.3 36 174-212 14-49 (241)
425 PRK14265 phosphate ABC transpo 96.9 0.0055 1.2E-07 64.2 10.1 68 241-310 165-233 (274)
426 cd03291 ABCC_CFTR1 The CFTR su 96.9 0.0044 9.5E-08 64.9 9.3 128 171-300 61-223 (282)
427 KOG2739 Leucine-rich acidic nu 96.9 0.00056 1.2E-08 67.6 2.4 32 514-547 44-75 (260)
428 PRK13633 cobalt transporter AT 96.9 0.0045 9.7E-08 65.2 9.4 136 171-310 34-217 (280)
429 cd03288 ABCC_SUR2 The SUR doma 96.9 0.006 1.3E-07 63.4 10.2 66 242-310 161-227 (257)
430 PRK14249 phosphate ABC transpo 96.9 0.0063 1.4E-07 63.0 10.4 60 242-302 152-212 (251)
431 PRK10261 glutathione transport 96.9 0.0055 1.2E-07 72.3 11.0 132 171-302 40-235 (623)
432 PRK14261 phosphate ABC transpo 96.9 0.0065 1.4E-07 63.0 10.4 59 242-301 154-213 (253)
433 PRK14245 phosphate ABC transpo 96.8 0.0079 1.7E-07 62.3 10.9 60 241-301 150-210 (250)
434 PLN03073 ABC transporter F fam 96.8 0.0056 1.2E-07 72.7 11.0 129 171-302 533-690 (718)
435 TIGR01186 proV glycine betaine 96.8 0.0043 9.3E-08 67.2 9.2 130 171-302 17-196 (363)
436 PRK08769 DNA polymerase III su 96.8 0.02 4.4E-07 60.5 14.0 177 158-358 10-208 (319)
437 PRK10982 galactose/methyl gala 96.8 0.0044 9.6E-08 71.1 9.9 132 171-302 272-457 (491)
438 PRK10253 iron-enterobactin tra 96.8 0.0077 1.7E-07 62.9 10.9 129 171-301 31-209 (265)
439 PRK11288 araG L-arabinose tran 96.8 0.0058 1.2E-07 70.4 10.8 132 171-302 277-462 (501)
440 COG0542 clpA ATP-binding subun 96.8 0.024 5.2E-07 66.0 15.5 104 153-267 492-605 (786)
441 PRK11160 cysteine/glutathione 96.8 0.0054 1.2E-07 71.8 10.7 135 171-310 364-546 (574)
442 PRK10982 galactose/methyl gala 96.8 0.0051 1.1E-07 70.7 10.2 132 171-302 22-200 (491)
443 PRK14237 phosphate transporter 96.8 0.0067 1.5E-07 63.4 10.2 58 242-300 168-226 (267)
444 PRK10789 putative multidrug tr 96.8 0.0078 1.7E-07 70.5 11.9 29 171-199 339-367 (569)
445 PRK14268 phosphate ABC transpo 96.8 0.008 1.7E-07 62.5 10.8 59 242-301 159-218 (258)
446 PRK14241 phosphate transporter 96.8 0.0073 1.6E-07 62.8 10.4 59 242-301 153-212 (258)
447 PRK13642 cbiO cobalt transport 96.8 0.0057 1.2E-07 64.3 9.7 130 171-300 31-205 (277)
448 PRK11147 ABC transporter ATPas 96.8 0.0055 1.2E-07 72.5 10.6 130 171-302 343-503 (635)
449 COG4619 ABC-type uncharacteriz 96.8 0.0062 1.3E-07 55.9 8.2 125 171-300 27-198 (223)
450 PRK14251 phosphate ABC transpo 96.8 0.0064 1.4E-07 63.0 9.8 59 242-301 152-211 (251)
451 PRK09700 D-allose transporter 96.8 0.0056 1.2E-07 70.7 10.3 132 171-302 287-475 (510)
452 TIGR03269 met_CoM_red_A2 methy 96.8 0.0069 1.5E-07 70.1 11.1 130 171-302 308-494 (520)
453 PRK09473 oppD oligopeptide tra 96.8 0.0055 1.2E-07 65.9 9.4 130 171-302 40-228 (330)
454 COG1127 Ttg2A ABC-type transpo 96.8 0.013 2.7E-07 57.6 10.8 127 171-301 32-211 (263)
455 KOG2739 Leucine-rich acidic nu 96.8 0.0009 2E-08 66.2 3.1 108 534-646 40-154 (260)
456 PRK14258 phosphate ABC transpo 96.8 0.0078 1.7E-07 62.7 10.3 62 241-302 154-217 (261)
457 PRK14256 phosphate ABC transpo 96.8 0.0078 1.7E-07 62.4 10.3 60 241-301 152-212 (252)
458 PRK06871 DNA polymerase III su 96.8 0.029 6.2E-07 59.6 14.5 176 159-355 9-200 (325)
459 PRK11614 livF leucine/isoleuci 96.8 0.0048 1E-07 63.3 8.6 57 244-300 144-201 (237)
460 TIGR03719 ABC_ABC_ChvD ATP-bin 96.8 0.009 2E-07 69.6 11.9 58 242-302 166-224 (552)
461 PRK07952 DNA replication prote 96.8 0.0061 1.3E-07 61.9 9.1 89 160-267 84-174 (244)
462 cd03233 ABC_PDR_domain1 The pl 96.8 0.0053 1.2E-07 61.1 8.6 102 171-272 31-153 (202)
463 KOG2228 Origin recognition com 96.8 0.018 3.9E-07 59.1 12.1 171 152-328 24-221 (408)
464 TIGR00958 3a01208 Conjugate Tr 96.8 0.0068 1.5E-07 72.9 11.0 134 171-310 505-686 (711)
465 cd03281 ABC_MSH5_euk MutS5 hom 96.8 0.0013 2.9E-08 65.7 4.2 123 173-302 29-160 (213)
466 PRK13695 putative NTPase; Prov 96.8 0.0021 4.6E-08 62.3 5.5 24 175-198 2-25 (174)
467 PF00448 SRP54: SRP54-type pro 96.8 0.0062 1.3E-07 59.9 8.8 90 173-265 1-93 (196)
468 COG3839 MalK ABC-type sugar tr 96.8 0.0075 1.6E-07 63.6 9.8 134 171-304 27-202 (338)
469 CHL00195 ycf46 Ycf46; Provisio 96.8 0.017 3.6E-07 65.1 13.2 173 153-352 229-429 (489)
470 PRK14271 phosphate ABC transpo 96.7 0.013 2.8E-07 61.5 11.7 59 242-301 168-227 (276)
471 PRK13549 xylose transporter AT 96.7 0.0072 1.6E-07 69.7 10.7 132 171-302 29-209 (506)
472 cd01131 PilT Pilus retraction 96.7 0.0019 4E-08 64.0 5.1 111 174-300 2-113 (198)
473 PRK09984 phosphonate/organopho 96.7 0.0029 6.4E-08 66.0 6.8 60 242-301 157-218 (262)
474 PF13207 AAA_17: AAA domain; P 96.7 0.0011 2.5E-08 59.8 3.3 23 175-197 1-23 (121)
475 TIGR03796 NHPM_micro_ABC1 NHPM 96.7 0.0081 1.7E-07 72.5 11.5 132 171-310 503-684 (710)
476 PRK00409 recombination and DNA 96.7 0.00084 1.8E-08 80.1 3.0 182 171-380 325-527 (782)
477 PRK11288 araG L-arabinose tran 96.7 0.0076 1.6E-07 69.4 10.7 132 171-302 28-206 (501)
478 PRK14272 phosphate ABC transpo 96.7 0.0092 2E-07 61.9 10.4 58 243-301 154-212 (252)
479 PRK13549 xylose transporter AT 96.7 0.0062 1.3E-07 70.2 10.0 130 171-302 286-471 (506)
480 PRK09183 transposase/IS protei 96.7 0.0035 7.5E-08 64.8 7.1 27 172-198 101-127 (259)
481 PRK08058 DNA polymerase III su 96.7 0.022 4.8E-07 61.3 13.6 158 154-324 7-180 (329)
482 PRK14274 phosphate ABC transpo 96.7 0.0094 2E-07 62.1 10.5 59 242-301 160-219 (259)
483 PRK14270 phosphate ABC transpo 96.7 0.0092 2E-07 61.8 10.3 59 242-301 152-211 (251)
484 PRK15079 oligopeptide ABC tran 96.7 0.0035 7.5E-08 67.4 7.3 130 171-302 45-228 (331)
485 PRK14244 phosphate ABC transpo 96.7 0.0096 2.1E-07 61.7 10.4 58 243-301 155-213 (251)
486 PRK14248 phosphate ABC transpo 96.7 0.0098 2.1E-07 62.2 10.6 58 243-301 170-228 (268)
487 PLN03211 ABC transporter G-25; 96.7 0.015 3.3E-07 68.6 13.2 151 171-325 92-301 (659)
488 PRK06067 flagellar accessory p 96.7 0.0066 1.4E-07 62.1 9.0 120 171-296 23-165 (234)
489 PRK06921 hypothetical protein; 96.7 0.0023 4.9E-08 66.3 5.5 39 172-212 116-154 (266)
490 TIGR02633 xylG D-xylose ABC tr 96.7 0.0082 1.8E-07 69.2 10.7 132 171-302 25-207 (500)
491 PRK09361 radB DNA repair and r 96.7 0.0057 1.2E-07 62.2 8.3 90 171-265 21-117 (225)
492 TIGR02633 xylG D-xylose ABC tr 96.7 0.0066 1.4E-07 69.9 9.8 132 171-302 284-469 (500)
493 PRK14267 phosphate ABC transpo 96.7 0.0082 1.8E-07 62.3 9.6 58 243-301 155-213 (253)
494 KOG1947 Leucine rich repeat pr 96.7 0.00025 5.3E-09 81.7 -2.0 87 560-646 185-280 (482)
495 KOG0062 ATPase component of AB 96.7 0.0035 7.6E-08 67.8 6.8 127 171-302 104-261 (582)
496 PRK14263 phosphate ABC transpo 96.7 0.014 3.1E-07 60.6 11.3 60 241-301 153-213 (261)
497 PRK14240 phosphate transporter 96.7 0.01 2.2E-07 61.4 10.2 59 242-301 151-210 (250)
498 TIGR03415 ABC_choXWV_ATP choli 96.7 0.0091 2E-07 65.1 10.1 130 171-302 48-231 (382)
499 COG3842 PotA ABC-type spermidi 96.7 0.0033 7.2E-08 66.6 6.5 133 171-304 29-205 (352)
500 PRK06090 DNA polymerase III su 96.7 0.047 1E-06 57.8 15.0 175 159-358 10-201 (319)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=8.2e-99 Score=878.25 Aligned_cols=841 Identities=37% Similarity=0.599 Sum_probs=685.2
Q ss_pred CcccccchhccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHH
Q 045686 1 MEILINPIMDYLVCPLCGVISKHCGYVCGLTDSLNSLREARRDLENITRDVEARVDLAVEQRSRPRHEVNGWLESAQFML 80 (885)
Q Consensus 1 me~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~i~~~~~~ae~~~~~~~~~v~~Wl~~~~~~~ 80 (885)
|++.++.. +++ +++.+.+++..+.++++.+..|++++..|+.++.|+ +.++.+ ...+..|.+.+++++
T Consensus 1 ~~~~~s~~---~~~-~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~-------~a~~~~-~~~~~~~~e~~~~~~ 68 (889)
T KOG4658|consen 1 MGACVSFG---VEK-LDQLLNRESECLDGKDNYILELKENLKALQSALEDL-------DAKRDD-LERRVNWEEDVGDLV 68 (889)
T ss_pred CCeEEEEe---hhh-HHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHH-------Hhhcch-HHHHHHHHHHHHHHH
Confidence 44444443 445 666788899999999999999999999999987764 444322 566789999999999
Q ss_pred HHHHHHHHhchHHhh----------------hhhccCcccCCCccccchhhHHHHHHHHHHHHHHhcCcceeeec-CCCC
Q 045686 81 REVDGILQRGDEEIQ----------------KTCLRKTCFPGTWCSRDKLGKEASEKIVAVEELIGRGHFAVIAE-RPPR 143 (885)
Q Consensus 81 ~~~ed~ld~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~ 143 (885)
|+++|+++.+..... +-|..+.| ..+....+.+++++...++.++.+..++.|..++. ..+.
T Consensus 69 ~~~e~~~~~~~v~~~~~~~~~~l~~~~~~~~~~c~~~~~-~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~ 147 (889)
T KOG4658|consen 69 YLAEDIIWLFLVEEIERKANDLLSTRSVERQRLCLCGFC-SKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPR 147 (889)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhhHHHHHHHhhhhhH-hHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccch
Confidence 999999998864321 12222333 44556677888999999999999887776766553 2222
Q ss_pred CCccccCCCCc--cchhHHHHHHHHHhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHH
Q 045686 144 APVEERPIGKT--VGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKI 221 (885)
Q Consensus 144 ~~~~~~~~~~~--vgr~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~ 221 (885)
.....+|..+. ||.+..++++.+.|.+++..+++|+||||+||||||+.++|+....+.+|+.++||+||++++...+
T Consensus 148 ~~~e~~~~~~~~~VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~i 227 (889)
T KOG4658|consen 148 EKVETRPIQSESDVGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKI 227 (889)
T ss_pred hhcccCCCCccccccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhH
Confidence 22333333223 9999999999999988778999999999999999999999999734699999999999999999999
Q ss_pred HHHHHHHcCCCccccCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccccccccCCCCCEEEEEcCChhHHhh
Q 045686 222 QESILRRFEIPDQMWIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSDLLDDSSQTGSKIVFTTRSEEVCGE 301 (885)
Q Consensus 222 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~~l~~~~~~gs~IivTTR~~~v~~~ 301 (885)
+.+|++.++.....+.....++.+..+.+.|++|||+|||||||+..+|+.++.+++ ....||+|++|||+++||..
T Consensus 228 q~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p---~~~~g~KvvlTTRs~~V~~~ 304 (889)
T KOG4658|consen 228 QQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFP---SRENGSKVVLTTRSEEVCGR 304 (889)
T ss_pred HHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCC---CccCCeEEEEEeccHhhhhc
Confidence 999999999866555555668899999999999999999999999999999999999 77789999999999999998
Q ss_pred -hcccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCchhHHHHHHHHHhcCCChhhHHHHHHHHhc
Q 045686 302 -MGARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPLALVTIGHAMASRMGPTQWRYAVGELQR 380 (885)
Q Consensus 302 -~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~l~~~~~~~~w~~~~~~l~~ 380 (885)
+++...+++++|+++|||.||++.++......++.++++|++|+++|+|+|||++++|+.|+.+.+..+|+.+.+.+.+
T Consensus 305 ~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s 384 (889)
T KOG4658|consen 305 AMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKS 384 (889)
T ss_pred cccCCccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccc
Confidence 8888899999999999999999999988777777799999999999999999999999999999999999999999988
Q ss_pred C-cccccCCCCcccccccccccccccchhhhHHhhhccCCCCceecHHHHHHHHHhcCcCCCC----CCCChHHHHHHHH
Q 045686 381 Y-PFKFAGMGNSVFPILRFSYDSLREDIFKTCFLYCALFPEEHNITKDELIQLWIGEGFLNGI----SPRDQGEYIIESL 455 (885)
Q Consensus 381 ~-~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~s~fp~~~~i~~~~li~~w~a~g~~~~~----~~~~~~~~~l~~L 455 (885)
. ..+.+++.+.+++++.+||++||+ ++|.||+|||+||+||.|+++.|+.+|+||||+.+. ..++.|++|+++|
T Consensus 385 ~~~~~~~~~~~~i~~iLklSyd~L~~-~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~L 463 (889)
T KOG4658|consen 385 SLAADFSGMEESILPILKLSYDNLPE-ELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEEL 463 (889)
T ss_pred cccCCCCchhhhhHHhhhccHhhhhH-HHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHH
Confidence 7 566667778999999999999996 599999999999999999999999999999999874 5689999999999
Q ss_pred HHhcccccCC--CCCCcEEEehhHHHHHHHHhhcCCC--ceEEEEcCCccccccccCcCCccceEEEecccCcccccccc
Q 045686 456 KLACLLERGE--NSEDSVKMHNLIRDMALELASENDN--KTLVLQNNVGSNIESINSFDGWHEAVRLSLWGSSIDFLALV 531 (885)
Q Consensus 456 ~~~~ll~~~~--~~~~~~~mHdlv~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~i~~~~~~ 531 (885)
++++|++..+ +...+|+|||+|||+|.++|++.+. ++.++.++.+. .+. |....|..+|++++.+|.+.. .+
T Consensus 464 V~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~-~~~-~~~~~~~~~rr~s~~~~~~~~--~~ 539 (889)
T KOG4658|consen 464 VRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGL-SEI-PQVKSWNSVRRMSLMNNKIEH--IA 539 (889)
T ss_pred HHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCc-ccc-ccccchhheeEEEEeccchhh--cc
Confidence 9999999876 3468999999999999999996654 33666665555 444 888889999999999999887 67
Q ss_pred cCCCCchhHHHHHhhcC--CccCCCCchhhhcCCcccEEecCCCCCCCcCchhhhcccccceeeccCCcccccChhhhcc
Q 045686 532 EAPSCPQVRTLLARLTM--LHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPEEIGRLKNLHHLNLSNTSIGCLPTAIKRL 609 (885)
Q Consensus 532 ~~~~~~~Lr~L~l~~~~--l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~Ls~~~i~~lp~~i~~L 609 (885)
....+++|++|.+.+|. +.. ++..+|..|+.|++|||++|..+.++|.+|++|.+||||+++++.|..+|.++++|
T Consensus 540 ~~~~~~~L~tLll~~n~~~l~~--is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~L 617 (889)
T KOG4658|consen 540 GSSENPKLRTLLLQRNSDWLLE--ISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNL 617 (889)
T ss_pred CCCCCCccceEEEeecchhhhh--cCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHH
Confidence 77889999999999995 666 89999999999999999999999999999999999999999999999999999999
Q ss_pred ccccEeecCCcccccccCCcccccCcccceecccccccccccCcccccccchhhhcCccCCcceeEEEechhhHHhhhCC
Q 045686 610 IKLKVLLLDGIQCHLSIPEGVISSLSSLQVFSCFSTELVELIDPLFNETAILDELNCLEHLNDLSLTLFSTEAVDKLLNS 689 (885)
Q Consensus 610 ~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~~~~l~~~ 689 (885)
.+|.+|++..+..+..+| +++..|++||+|.+...... .+...+.++.+|++|+.+.++..+......+...
T Consensus 618 k~L~~Lnl~~~~~l~~~~-~i~~~L~~Lr~L~l~~s~~~-------~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~ 689 (889)
T KOG4658|consen 618 KKLIYLNLEVTGRLESIP-GILLELQSLRVLRLPRSALS-------NDKLLLKELENLEHLENLSITISSVLLLEDLLGM 689 (889)
T ss_pred Hhhheecccccccccccc-chhhhcccccEEEeeccccc-------cchhhHHhhhcccchhhheeecchhHhHhhhhhh
Confidence 999999999998666664 44777999999999876522 1455788889999999998876665444555555
Q ss_pred CcccccceeEEeccccc--cccchhhhhhccceEEe-eccCccceeecCCCC-Ccc-ccccccEEeeccccCCccccccc
Q 045686 690 PKLQRCIRRLTIESSEL--LSLELGLMLSHLEILRI-KCGFMKRLNIDQGLN-NRP-SFSALRRLSIILCPDIQNLTCLV 764 (885)
Q Consensus 690 ~~~~~~L~~L~l~~~~~--~~~~l~~~~~~L~~L~l-~~~~l~~l~~~~~~~-~~~-~l~~L~~L~L~~c~~l~~l~~l~ 764 (885)
..+.+..+.+.+.++.. ....+..+ .+|+.|.+ .|+..+. ...+... ... .|+++.++.+.+|.....+.|..
T Consensus 690 ~~L~~~~~~l~~~~~~~~~~~~~~~~l-~~L~~L~i~~~~~~e~-~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~ 767 (889)
T KOG4658|consen 690 TRLRSLLQSLSIEGCSKRTLISSLGSL-GNLEELSILDCGISEI-VIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLL 767 (889)
T ss_pred HHHHHHhHhhhhcccccceeecccccc-cCcceEEEEcCCCchh-hcccccccchhhhHHHHHHHHhhccccccccchhh
Confidence 54444555666544442 22234444 89999999 5544322 2222211 112 27789999999998888888888
Q ss_pred cCCCccEEeEeccCCchhhhccccc--CCCccccccccccee-ccccccccccccCCccCCCCccEEeeccCCCCCCcCC
Q 045686 765 HVPSLQFLSLSNCHSLEEIVGTYAS--GSSESRNYFSNLMAV-DLDGLPTLRSICSGTVAFPSLQTLSITGCPSLKKLPF 841 (885)
Q Consensus 765 ~l~~L~~L~L~~~~~l~~l~~~~~~--~~~~~~~~~~~L~~L-~l~~~~~l~~~~~~~~~~p~L~~L~i~~C~~L~~lp~ 841 (885)
..|+|+.|.+..|..++++++.... ........|+++..+ .+.+.+.+..+......+++|+.+.+..||+++.+|.
T Consensus 768 f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~ 847 (889)
T KOG4658|consen 768 FAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLPL 847 (889)
T ss_pred ccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccCccchhheehhcCcccccCcc
Confidence 8999999999999998888653111 111124566777777 5777777777766666788899999999999999999
Q ss_pred CCccccCC---ceEEEccHhhhhhcccCcccccccc
Q 045686 842 NSESARRS---LISVRASAEWWNQLEWEDEATKDIF 874 (885)
Q Consensus 842 ~~~~~~~~---l~~i~~~~~~~~~l~w~~~~~~~~~ 874 (885)
........ ......+.+|.+.++|+++.++..+
T Consensus 848 ~~~~~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 883 (889)
T KOG4658|consen 848 LSTLTIVGCEEKLKEYPDGEWLEGVYWEDELTKLRF 883 (889)
T ss_pred ccccceeccccceeecCCccceeeEEehhhhhhhhc
Confidence 87655444 3444445678889999999998776
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.5e-62 Score=607.93 Aligned_cols=621 Identities=21% Similarity=0.317 Sum_probs=399.7
Q ss_pred CCCccchhHHHHHHHHHhh--cCCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEE---cCc----------
Q 045686 151 IGKTVGLDSIISEVWRCIE--DHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKV---SRD---------- 215 (885)
Q Consensus 151 ~~~~vgr~~~~~~l~~~L~--~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v---~~~---------- 215 (885)
.+.+|||++.++++..+|. .+++++|+|+||||+||||||+.+|+.. ...|++.+|+.. +..
T Consensus 183 ~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l---~~~F~g~vfv~~~~v~~~~~~~~~~~~~ 259 (1153)
T PLN03210 183 FEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRL---SRQFQSSVFIDRAFISKSMEIYSSANPD 259 (1153)
T ss_pred cccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHH---hhcCCeEEEeeccccccchhhccccccc
Confidence 3569999999999999883 4678999999999999999999999987 367888877642 111
Q ss_pred -cc-HHHHHHHHHHHcCCCccccCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccccccccCCCCCEEEEEc
Q 045686 216 -AN-LEKIQESILRRFEIPDQMWIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSDLLDDSSQTGSKIVFTT 293 (885)
Q Consensus 216 -~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~~l~~~~~~gs~IivTT 293 (885)
+. ...+..+++..+.... +.... ....+++.++++|+||||||||+...++.+..... ..++||+|||||
T Consensus 260 ~~~~~~~l~~~~l~~il~~~----~~~~~-~~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~---~~~~GsrIIiTT 331 (1153)
T PLN03210 260 DYNMKLHLQRAFLSEILDKK----DIKIY-HLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQ---WFGSGSRIIVIT 331 (1153)
T ss_pred ccchhHHHHHHHHHHHhCCC----CcccC-CHHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCc---cCCCCcEEEEEe
Confidence 01 1123334444332111 00111 12456788999999999999999877777654433 557899999999
Q ss_pred CChhHHhhhcccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCchhHHHHHHHHHhcCCChhhHHH
Q 045686 294 RSEEVCGEMGARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPLALVTIGHAMASRMGPTQWRY 373 (885)
Q Consensus 294 R~~~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~l~~~~~~~~w~~ 373 (885)
|+..++..++..+.|+++.|++++||+||+++||.... .++++++++++|+++|+|+|||++++|++|++ ++..+|+.
T Consensus 332 rd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~-~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~-k~~~~W~~ 409 (1153)
T PLN03210 332 KDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNS-PPDGFMELASEVALRAGNLPLGLNVLGSYLRG-RDKEDWMD 409 (1153)
T ss_pred CcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCC-CcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcC-CCHHHHHH
Confidence 99999987777889999999999999999999987643 34567899999999999999999999999998 57899999
Q ss_pred HHHHHhcCcccccCCCCcccccccccccccccchhhhHHhhhccCCCCceecHHHHHHHHHhcCcCCCCCCCChHHHHHH
Q 045686 374 AVGELQRYPFKFAGMGNSVFPILRFSYDSLREDIFKTCFLYCALFPEEHNITKDELIQLWIGEGFLNGISPRDQGEYIIE 453 (885)
Q Consensus 374 ~~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~s~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~l~ 453 (885)
+++.++... +..+..+|++||+.|+++..|.||+++|+||.+..++ .+..|++.+... ++..++
T Consensus 410 ~l~~L~~~~------~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~-------~~~~l~ 473 (1153)
T PLN03210 410 MLPRLRNGL------DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLD-------VNIGLK 473 (1153)
T ss_pred HHHHHHhCc------cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCC-------chhChH
Confidence 999987643 2479999999999998744799999999999987553 466778876543 233489
Q ss_pred HHHHhcccccCCCCCCcEEEehhHHHHHHHHhhcCCC----ceEEEEcC---------Ccc--------c--------cc
Q 045686 454 SLKLACLLERGENSEDSVKMHNLIRDMALELASENDN----KTLVLQNN---------VGS--------N--------IE 504 (885)
Q Consensus 454 ~L~~~~ll~~~~~~~~~~~mHdlv~~~a~~~~~~~~~----~~~~~~~~---------~~~--------~--------~~ 504 (885)
.|+++||++.. .+.+.|||++|++|+++++++.. ..+++... .+. + ..
T Consensus 474 ~L~~ksLi~~~---~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~ 550 (1153)
T PLN03210 474 NLVDKSLIHVR---EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIH 550 (1153)
T ss_pred HHHhcCCEEEc---CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeec
Confidence 99999999875 46799999999999999876431 12332110 000 0 00
Q ss_pred cccCcCCccceEEEeccc-------------------------------CcccccccccCCCCchhHHHHHhhcCCccCC
Q 045686 505 SINSFDGWHEAVRLSLWG-------------------------------SSIDFLALVEAPSCPQVRTLLARLTMLHTLP 553 (885)
Q Consensus 505 ~~~~~~~~~~~~~l~l~~-------------------------------~~i~~~~~~~~~~~~~Lr~L~l~~~~l~~~~ 553 (885)
. ..|.++++++.|.+.. +.+.. +|....+.+|+.|++.+|.+..
T Consensus 551 ~-~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~--lP~~f~~~~L~~L~L~~s~l~~-- 625 (1153)
T PLN03210 551 E-NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRC--MPSNFRPENLVKLQMQGSKLEK-- 625 (1153)
T ss_pred H-HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCC--CCCcCCccCCcEEECcCccccc--
Confidence 0 1133444455544432 22222 2222234455555555555554
Q ss_pred CCchhhhcCCcccEEecCCCCCCCcCchhhhcccccceeeccCC-cccccChhhhccccccEeecCCcccccccCCcccc
Q 045686 554 IPSRFFDSMDALEVLDLSYNLDLNQLPEEIGRLKNLHHLNLSNT-SIGCLPTAIKRLIKLKVLLLDGIQCHLSIPEGVIS 632 (885)
Q Consensus 554 ~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~Ls~~-~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~ 632 (885)
++.. +..+++|++|+|++|..++.+|. ++.+++|++|++++| .+..+|..++++++|++|++++|..+..+|.. +
T Consensus 626 L~~~-~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i- 701 (1153)
T PLN03210 626 LWDG-VHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I- 701 (1153)
T ss_pred cccc-cccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc-C-
Confidence 4444 35566666666666545555553 555666666666665 45666666666666666666666556666654 2
Q ss_pred cCcccceecccccccccccCcccccccchhhhcCccCCcceeEEEechhhHHhhhCC-----------------------
Q 045686 633 SLSSLQVFSCFSTELVELIDPLFNETAILDELNCLEHLNDLSLTLFSTEAVDKLLNS----------------------- 689 (885)
Q Consensus 633 ~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~~~~l~~~----------------------- 689 (885)
++++|++|++++|...+.+|.. ..+|+.|++..+....++.....
T Consensus 702 ~l~sL~~L~Lsgc~~L~~~p~~------------~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l 769 (1153)
T PLN03210 702 NLKSLYRLNLSGCSRLKSFPDI------------STNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPL 769 (1153)
T ss_pred CCCCCCEEeCCCCCCccccccc------------cCCcCeeecCCCccccccccccccccccccccccchhhcccccccc
Confidence 5666666666665433222110 11222222222221111110000
Q ss_pred ----CcccccceeEEecccc-ccccc--hhhhhhccceEEe-eccCccceeecCCCCCccccccccEEeeccccCCcccc
Q 045686 690 ----PKLQRCIRRLTIESSE-LLSLE--LGLMLSHLEILRI-KCGFMKRLNIDQGLNNRPSFSALRRLSIILCPDIQNLT 761 (885)
Q Consensus 690 ----~~~~~~L~~L~l~~~~-~~~~~--l~~~~~~L~~L~l-~~~~l~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~ 761 (885)
....++|+.|++++|. ...++ +..+ ++|+.|++ +|+.++.+|... .+++|+.|++++|..+..+|
T Consensus 770 ~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L-~~L~~L~Ls~C~~L~~LP~~~------~L~sL~~L~Ls~c~~L~~~p 842 (1153)
T PLN03210 770 TPLMTMLSPSLTRLFLSDIPSLVELPSSIQNL-HKLEHLEIENCINLETLPTGI------NLESLESLDLSGCSRLRTFP 842 (1153)
T ss_pred chhhhhccccchheeCCCCCCccccChhhhCC-CCCCEEECCCCCCcCeeCCCC------CccccCEEECCCCCcccccc
Confidence 0011244455554443 11111 2222 44555555 344444443222 14455555555554444433
Q ss_pred ccccCCCccEEeEeccCCchhhhcccccCCCcccccccccceeccccccccccccCCccCCCCccEEeeccCCCCCCcCC
Q 045686 762 CLVHVPSLQFLSLSNCHSLEEIVGTYASGSSESRNYFSNLMAVDLDGLPTLRSICSGTVAFPSLQTLSITGCPSLKKLPF 841 (885)
Q Consensus 762 ~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~p~L~~L~i~~C~~L~~lp~ 841 (885)
.+ .++|+.|+|++| .++.++ ..+..+++|+.|++++|+++..++.....+++|+.|++++|++|+.++.
T Consensus 843 ~~--~~nL~~L~Ls~n-~i~~iP--------~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l 911 (1153)
T PLN03210 843 DI--STNISDLNLSRT-GIEEVP--------WWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASW 911 (1153)
T ss_pred cc--ccccCEeECCCC-CCccCh--------HHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccC
Confidence 22 234555555554 233332 3567789999999999999999988888899999999999999987775
Q ss_pred C
Q 045686 842 N 842 (885)
Q Consensus 842 ~ 842 (885)
.
T Consensus 912 ~ 912 (1153)
T PLN03210 912 N 912 (1153)
T ss_pred C
Confidence 3
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=4.9e-44 Score=380.76 Aligned_cols=280 Identities=36% Similarity=0.638 Sum_probs=229.5
Q ss_pred hhHHHHHHHHHhhc--CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHHHcCCCcc
Q 045686 157 LDSIISEVWRCIED--HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILRRFEIPDQ 234 (885)
Q Consensus 157 r~~~~~~l~~~L~~--~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~ 234 (885)
||.++++|.+.|.+ ++.++|+|+||||+||||||+.++++... ...|+.++|+.++...+...++..|+.+++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~-~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~ 79 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRI-KNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDS 79 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHH-CCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-S
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccccc-cccccccccccccccccccccccccccccccccc
Confidence 78999999999977 78999999999999999999999998653 5889999999999998889999999999988754
Q ss_pred cc-CCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccccccccCCCCCEEEEEcCChhHHhhhcc-cceeeccC
Q 045686 235 MW-IGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSDLLDDSSQTGSKIVFTTRSEEVCGEMGA-RRRFRVEC 312 (885)
Q Consensus 235 ~~-~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~~l~~~~~~gs~IivTTR~~~v~~~~~~-~~~~~l~~ 312 (885)
.. ...+.++....+.+.+.++++||||||||+...|..+...++ ....|++||||||+..++..+.. ...|++++
T Consensus 80 ~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~---~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~ 156 (287)
T PF00931_consen 80 SISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLP---SFSSGSKILVTTRDRSVAGSLGGTDKVIELEP 156 (287)
T ss_dssp TSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------H---CHHSS-EEEEEESCGGGGTTHHSCEEEEECSS
T ss_pred ccccccccccccccchhhhccccceeeeeeecccccccccccccc---cccccccccccccccccccccccccccccccc
Confidence 32 456778899999999999999999999999988877766655 55668999999999999877665 67899999
Q ss_pred CChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCchhHHHHHHHHHhcCCChhhHHHHHHHHhcCcccccCCCCcc
Q 045686 313 LSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPLALVTIGHAMASRMGPTQWRYAVGELQRYPFKFAGMGNSV 392 (885)
Q Consensus 313 L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~ 392 (885)
|+++||++||.+.++......++.+++++++|+++|+|+||||+++|++|+.+.+..+|+.+++.+.....+..+....+
T Consensus 157 L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~ 236 (287)
T PF00931_consen 157 LSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSV 236 (287)
T ss_dssp --HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999866533344556789999999999999999999999776678999999998887754444445689
Q ss_pred cccccccccccccchhhhHHhhhccCCCCceecHHHHHHHHHhcCcCCC
Q 045686 393 FPILRFSYDSLREDIFKTCFLYCALFPEEHNITKDELIQLWIGEGFLNG 441 (885)
Q Consensus 393 ~~~l~~sy~~L~~~~~k~cfl~~s~fp~~~~i~~~~li~~w~a~g~~~~ 441 (885)
..++.+||+.||++ +|+||+|||+||+++.|+++.++++|+++||++.
T Consensus 237 ~~~l~~s~~~L~~~-~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 237 FSALELSYDSLPDE-LRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHHHHHHHHSSHTC-CHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred cccceechhcCCcc-HHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 99999999999996 9999999999999999999999999999999975
No 4
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.90 E-value=6.8e-26 Score=238.83 Aligned_cols=325 Identities=22% Similarity=0.261 Sum_probs=218.4
Q ss_pred eEEEEcCCccccccccC-cCCccceEEEecccCcccccccccCCCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEec
Q 045686 492 TLVLQNNVGSNIESINS-FDGWHEAVRLSLWGSSIDFLALVEAPSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDL 570 (885)
Q Consensus 492 ~~~~~~~~~~~~~~~~~-~~~~~~~~~l~l~~~~i~~~~~~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~L 570 (885)
.|+-.+..+. .+. |. ...+.++.||++.+|++... ...++.+|.||++++..|+++...+|+++| +++.|.+|||
T Consensus 35 ~WLkLnrt~L-~~v-PeEL~~lqkLEHLs~~HN~L~~v-hGELs~Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDL 110 (1255)
T KOG0444|consen 35 TWLKLNRTKL-EQV-PEELSRLQKLEHLSMAHNQLISV-HGELSDLPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDL 110 (1255)
T ss_pred eEEEechhhh-hhC-hHHHHHHhhhhhhhhhhhhhHhh-hhhhccchhhHHHhhhccccccCCCCchhc-ccccceeeec
Confidence 3555454444 333 43 34567899999999988763 466788999999999999999989999965 6999999999
Q ss_pred CCCCCCCcCchhhhcccccceeeccCCcccccChh-hhccccccEeecCCcccccccCCcccccCcccceeccccccccc
Q 045686 571 SYNLDLNQLPEEIGRLKNLHHLNLSNTSIGCLPTA-IKRLIKLKVLLLDGIQCHLSIPEGVISSLSSLQVFSCFSTELVE 649 (885)
Q Consensus 571 s~~~~i~~lp~~i~~L~~L~~L~Ls~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~ 649 (885)
|+| .+++.|..+..-+++-.|+||+|+|..+|.. +-+|+-|-+|||++|+ +..+|+. +..|.+|++|.+++|.+..
T Consensus 111 ShN-qL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ-~RRL~~LqtL~Ls~NPL~h 187 (1255)
T KOG0444|consen 111 SHN-QLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR-LEMLPPQ-IRRLSMLQTLKLSNNPLNH 187 (1255)
T ss_pred chh-hhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch-hhhcCHH-HHHHhhhhhhhcCCChhhH
Confidence 999 9999999999999999999999999999988 6689999999999997 9999998 8999999999999997743
Q ss_pred ccCcccccccchhhhcCccCCcceeEEEechhhHHhhhCCCcccccceeEEeccccccccc--hhhhhhccceEEeeccC
Q 045686 650 LIDPLFNETAILDELNCLEHLNDLSLTLFSTEAVDKLLNSPKLQRCIRRLTIESSELLSLE--LGLMLSHLEILRIKCGF 727 (885)
Q Consensus 650 ~~~~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~--l~~~~~~L~~L~l~~~~ 727 (885)
..+..|+.++.|+.|.++.... ....+........+|..++++.|++..++ +-.. ++|+.|+|+.|.
T Consensus 188 ---------fQLrQLPsmtsL~vLhms~TqR-Tl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l-~~LrrLNLS~N~ 256 (1255)
T KOG0444|consen 188 ---------FQLRQLPSMTSLSVLHMSNTQR-TLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKL-RNLRRLNLSGNK 256 (1255)
T ss_pred ---------HHHhcCccchhhhhhhcccccc-hhhcCCCchhhhhhhhhccccccCCCcchHHHhhh-hhhheeccCcCc
Confidence 2445555666666666653321 12222222222235566666655533332 2222 566666666666
Q ss_pred ccceeecCCCCCccccccccEEeeccccCCcccc-ccccCCCccEEeEeccCCc-hhhhcc---------------cccC
Q 045686 728 MKRLNIDQGLNNRPSFSALRRLSIILCPDIQNLT-CLVHVPSLQFLSLSNCHSL-EEIVGT---------------YASG 790 (885)
Q Consensus 728 l~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~~~~l-~~l~~~---------------~~~~ 790 (885)
++.+...... ..+|++|+++.+ +++.+| .+.+|++|+.|.+.+|..- +.+|.. ....
T Consensus 257 iteL~~~~~~-----W~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LEl 330 (1255)
T KOG0444|consen 257 ITELNMTEGE-----WENLETLNLSRN-QLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLEL 330 (1255)
T ss_pred eeeeeccHHH-----Hhhhhhhccccc-hhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcccccc
Confidence 6655433322 355566666655 455544 4555555555555554310 111100 0011
Q ss_pred CCcccccccccceeccccccccccccCCccCCCCccEEeeccCCCCCCcCC
Q 045686 791 SSESRNYFSNLMAVDLDGLPTLRSICSGTVAFPSLQTLSITGCPSLKKLPF 841 (885)
Q Consensus 791 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~p~L~~L~i~~C~~L~~lp~ 841 (885)
.+..++.|++|+.|.|+. +.|-.+|..+.-+|.|+.|++.++|+|..-|-
T Consensus 331 VPEglcRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 331 VPEGLCRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred CchhhhhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCcCccCCCC
Confidence 223566677777777765 45666777777777788888887777765443
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.86 E-value=7.1e-24 Score=223.71 Aligned_cols=285 Identities=22% Similarity=0.256 Sum_probs=178.7
Q ss_pred ccceEEEecccCcccccc-cccCCCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCchhh-hccccc
Q 045686 512 WHEAVRLSLWGSSIDFLA-LVEAPSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPEEI-GRLKNL 589 (885)
Q Consensus 512 ~~~~~~l~l~~~~i~~~~-~~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i-~~L~~L 589 (885)
++.+|.+.+..|++.+.. .+.+..+..|.+|+|++|.++. +|.. +...+++-+|+||+| +|..+|.++ -+|..|
T Consensus 77 Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~E--vP~~-LE~AKn~iVLNLS~N-~IetIPn~lfinLtDL 152 (1255)
T KOG0444|consen 77 LPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLRE--VPTN-LEYAKNSIVLNLSYN-NIETIPNSLFINLTDL 152 (1255)
T ss_pred chhhHHHhhhccccccCCCCchhcccccceeeecchhhhhh--cchh-hhhhcCcEEEEcccC-ccccCCchHHHhhHhH
Confidence 345666777766665432 2355677788888888888877 7776 677788888888888 888888765 367788
Q ss_pred ceeeccCCcccccChhhhccccccEeecCCcccccccCCcccccCcccceecccccccccccCcccccccchhhhcCccC
Q 045686 590 HHLNLSNTSIGCLPTAIKRLIKLKVLLLDGIQCHLSIPEGVISSLSSLQVFSCFSTELVELIDPLFNETAILDELNCLEH 669 (885)
Q Consensus 590 ~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~ 669 (885)
-+||||+|++..+|+.+.+|.+|++|+|++|+ +..+.-..+..|++|+.|.+++++.+- ...+..+..|.+
T Consensus 153 LfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NP-L~hfQLrQLPsmtsL~vLhms~TqRTl--------~N~Ptsld~l~N 223 (1255)
T KOG0444|consen 153 LFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNP-LNHFQLRQLPSMTSLSVLHMSNTQRTL--------DNIPTSLDDLHN 223 (1255)
T ss_pred hhhccccchhhhcCHHHHHHhhhhhhhcCCCh-hhHHHHhcCccchhhhhhhcccccchh--------hcCCCchhhhhh
Confidence 88888888888888888888888888888886 333222224566777777777765431 123334555566
Q ss_pred CcceeEEEechhhHHhhhCCCcccccceeEEeccccccccch--hhhhhccceEEeeccCccceeecCCCCCcccccccc
Q 045686 670 LNDLSLTLFSTEAVDKLLNSPKLQRCIRRLTIESSELLSLEL--GLMLSHLEILRIKCGFMKRLNIDQGLNNRPSFSALR 747 (885)
Q Consensus 670 L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l--~~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~l~~L~ 747 (885)
|..++++.++...++.-.-. ..+|+.|+|++|.++.+.. ... .+|++|+++.|.++.+|..... +++|+
T Consensus 224 L~dvDlS~N~Lp~vPecly~---l~~LrrLNLS~N~iteL~~~~~~W-~~lEtLNlSrNQLt~LP~avcK-----L~kL~ 294 (1255)
T KOG0444|consen 224 LRDVDLSENNLPIVPECLYK---LRNLRRLNLSGNKITELNMTEGEW-ENLETLNLSRNQLTVLPDAVCK-----LTKLT 294 (1255)
T ss_pred hhhccccccCCCcchHHHhh---hhhhheeccCcCceeeeeccHHHH-hhhhhhccccchhccchHHHhh-----hHHHH
Confidence 66666665554443322111 1256777777776554442 222 5666666666666666544433 44555
Q ss_pred EEeecccc------------------------CCcccc-ccccCCCccEEeEeccCCchhhhcccccCCCcccccccccc
Q 045686 748 RLSIILCP------------------------DIQNLT-CLVHVPSLQFLSLSNCHSLEEIVGTYASGSSESRNYFSNLM 802 (885)
Q Consensus 748 ~L~L~~c~------------------------~l~~l~-~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~L~ 802 (885)
+|.+.++. .+.-+| .++.++.|+.|.|+.|..+ ++| ..+.-+|.|+
T Consensus 295 kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLi-TLP--------eaIHlL~~l~ 365 (1255)
T KOG0444|consen 295 KLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLI-TLP--------EAIHLLPDLK 365 (1255)
T ss_pred HHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhccccccee-ech--------hhhhhcCCcc
Confidence 55444441 333322 3455666666766665433 232 4667789999
Q ss_pred eeccccccccccccCCccCCCCccE
Q 045686 803 AVDLDGLPTLRSICSGTVAFPSLQT 827 (885)
Q Consensus 803 ~L~l~~~~~l~~~~~~~~~~p~L~~ 827 (885)
.|++.++++|.--|....+-.+|+.
T Consensus 366 vLDlreNpnLVMPPKP~da~~~lef 390 (1255)
T KOG0444|consen 366 VLDLRENPNLVMPPKPNDARKKLEF 390 (1255)
T ss_pred eeeccCCcCccCCCCcchhhhccee
Confidence 9999999999865543222234443
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.85 E-value=8.9e-23 Score=214.50 Aligned_cols=316 Identities=22% Similarity=0.264 Sum_probs=237.8
Q ss_pred cCcCCcc-ceEEEecccCcccccccccCCCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcC-chhhh
Q 045686 507 NSFDGWH-EAVRLSLWGSSIDFLALVEAPSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQL-PEEIG 584 (885)
Q Consensus 507 ~~~~~~~-~~~~l~l~~~~i~~~~~~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~l-p~~i~ 584 (885)
|.+.... ++..|++.+|.|.+..-..+.-++.||+|+|+.|.+.. +|...|..-.++++|+|++| .|+.+ -..|.
T Consensus 118 P~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~--i~~~sfp~~~ni~~L~La~N-~It~l~~~~F~ 194 (873)
T KOG4194|consen 118 PRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISE--IPKPSFPAKVNIKKLNLASN-RITTLETGHFD 194 (873)
T ss_pred ccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhc--ccCCCCCCCCCceEEeeccc-ccccccccccc
Confidence 5555444 48999999998887555566778999999999999888 77666888889999999999 77665 45677
Q ss_pred cccccceeeccCCcccccChh-hhccccccEeecCCcccccccCCcccccCcccceecccccccccccCcccccccchhh
Q 045686 585 RLKNLHHLNLSNTSIGCLPTA-IKRLIKLKVLLLDGIQCHLSIPEGVISSLSSLQVFSCFSTELVELIDPLFNETAILDE 663 (885)
Q Consensus 585 ~L~~L~~L~Ls~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~ 663 (885)
.|.+|.+|.|+.|+|+.+|.- |.+|++|+.|+|..|. +..+..-.|.+|++|+.|.+..|.+... ....
T Consensus 195 ~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~-irive~ltFqgL~Sl~nlklqrN~I~kL------~DG~--- 264 (873)
T KOG4194|consen 195 SLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR-IRIVEGLTFQGLPSLQNLKLQRNDISKL------DDGA--- 264 (873)
T ss_pred ccchheeeecccCcccccCHHHhhhcchhhhhhccccc-eeeehhhhhcCchhhhhhhhhhcCcccc------cCcc---
Confidence 888999999999999999876 6679999999999996 6665444488999999999998877642 1112
Q ss_pred hcCccCCcceeEEEechhhHHh--hhCCCcccccceeEEeccccccccc--hhhhhhccceEEeeccCccceeecCCCCC
Q 045686 664 LNCLEHLNDLSLTLFSTEAVDK--LLNSPKLQRCIRRLTIESSELLSLE--LGLMLSHLEILRIKCGFMKRLNIDQGLNN 739 (885)
Q Consensus 664 l~~L~~L~~L~l~~~~~~~~~~--l~~~~~~~~~L~~L~l~~~~~~~~~--l~~~~~~L~~L~l~~~~l~~l~~~~~~~~ 739 (885)
+-.|.+++.|++..+....+.. +.. .+.|+.|+++.|.+..+. -..++++|+.|+|+.|.++.++...+.
T Consensus 265 Fy~l~kme~l~L~~N~l~~vn~g~lfg----Lt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~-- 338 (873)
T KOG4194|consen 265 FYGLEKMEHLNLETNRLQAVNEGWLFG----LTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFR-- 338 (873)
T ss_pred eeeecccceeecccchhhhhhcccccc----cchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHH--
Confidence 2345556666666555444322 222 237889999998865544 344569999999999999998776554
Q ss_pred ccccccccEEeeccccCCcccc--ccccCCCccEEeEeccCCchhhhcccccCCCcccccccccceeccccccccccccC
Q 045686 740 RPSFSALRRLSIILCPDIQNLT--CLVHVPSLQFLSLSNCHSLEEIVGTYASGSSESRNYFSNLMAVDLDGLPTLRSICS 817 (885)
Q Consensus 740 ~~~l~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 817 (885)
.++.|+.|+|+.+ .++++. .+..+.+|+.|+|++|.. .-.+. .....+.++|+|+.|.+.| ++++.++.
T Consensus 339 --~L~~Le~LnLs~N-si~~l~e~af~~lssL~~LdLr~N~l-s~~IE----Daa~~f~gl~~LrkL~l~g-Nqlk~I~k 409 (873)
T KOG4194|consen 339 --VLSQLEELNLSHN-SIDHLAEGAFVGLSSLHKLDLRSNEL-SWCIE----DAAVAFNGLPSLRKLRLTG-NQLKSIPK 409 (873)
T ss_pred --HHHHhhhhccccc-chHHHHhhHHHHhhhhhhhcCcCCeE-EEEEe----cchhhhccchhhhheeecC-ceeeecch
Confidence 4899999999999 688774 566789999999999853 22222 1234677899999999999 57888875
Q ss_pred -CccCCCCccEEeeccCCCCCCcCCCCccccCCceE
Q 045686 818 -GTVAFPSLQTLSITGCPSLKKLPFNSESARRSLIS 852 (885)
Q Consensus 818 -~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~ 852 (885)
.+..+++|++|++.+ +.+.++..+.+..+ +|++
T Consensus 410 rAfsgl~~LE~LdL~~-NaiaSIq~nAFe~m-~Lk~ 443 (873)
T KOG4194|consen 410 RAFSGLEALEHLDLGD-NAIASIQPNAFEPM-ELKE 443 (873)
T ss_pred hhhccCcccceecCCC-Ccceeecccccccc-hhhh
Confidence 567799999999988 56778877766554 5544
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.85 E-value=1.1e-22 Score=213.81 Aligned_cols=313 Identities=21% Similarity=0.232 Sum_probs=193.6
Q ss_pred cceEEEecccCcccccccccCCCC-chhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCch-hhhcccccc
Q 045686 513 HEAVRLSLWGSSIDFLALVEAPSC-PQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPE-EIGRLKNLH 590 (885)
Q Consensus 513 ~~~~~l~l~~~~i~~~~~~~~~~~-~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~-~i~~L~~L~ 590 (885)
++++.+++..|.++. +|.+... .+|+.|+|.+|.+.+ +....+..++.||+||||.| .|..+|. ++..-.+++
T Consensus 102 ~nLq~v~l~~N~Lt~--IP~f~~~sghl~~L~L~~N~I~s--v~se~L~~l~alrslDLSrN-~is~i~~~sfp~~~ni~ 176 (873)
T KOG4194|consen 102 PNLQEVNLNKNELTR--IPRFGHESGHLEKLDLRHNLISS--VTSEELSALPALRSLDLSRN-LISEIPKPSFPAKVNIK 176 (873)
T ss_pred Ccceeeeeccchhhh--cccccccccceeEEeeecccccc--ccHHHHHhHhhhhhhhhhhc-hhhcccCCCCCCCCCce
Confidence 344455555554444 3333322 235555555555555 44444555566666666666 5555543 233345566
Q ss_pred eeeccCCcccccChh-hhccccccEeecCCcccccccCCcccccCcccceecccccccccccCcccccccchhhhcCccC
Q 045686 591 HLNLSNTSIGCLPTA-IKRLIKLKVLLLDGIQCHLSIPEGVISSLSSLQVFSCFSTELVELIDPLFNETAILDELNCLEH 669 (885)
Q Consensus 591 ~L~Ls~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~ 669 (885)
+|+|++|.|+.+-.+ |..+.+|.+|.|+.|+ ++.+|..+|.+|++|+.|++..|.+... ..-.++.|++
T Consensus 177 ~L~La~N~It~l~~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN~iriv---------e~ltFqgL~S 246 (873)
T KOG4194|consen 177 KLNLASNRITTLETGHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNRNRIRIV---------EGLTFQGLPS 246 (873)
T ss_pred EEeeccccccccccccccccchheeeecccCc-ccccCHHHhhhcchhhhhhccccceeee---------hhhhhcCchh
Confidence 666666666555443 5556666666666665 5666665566666666666666654321 1112333444
Q ss_pred CcceeEEEechhhHHhhhCCCcccccceeEEeccccccccc---hhhhhhccceEEeeccCccceeecCCCCCccccccc
Q 045686 670 LNDLSLTLFSTEAVDKLLNSPKLQRCIRRLTIESSELLSLE---LGLMLSHLEILRIKCGFMKRLNIDQGLNNRPSFSAL 746 (885)
Q Consensus 670 L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~---l~~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~l~~L 746 (885)
|+.|.+..++...+..-. .-.+..++.|+|+.|.+..+. +..+ ..|+.|++++|.++.+.++... ..++|
T Consensus 247 l~nlklqrN~I~kL~DG~--Fy~l~kme~l~L~~N~l~~vn~g~lfgL-t~L~~L~lS~NaI~rih~d~Ws----ftqkL 319 (873)
T KOG4194|consen 247 LQNLKLQRNDISKLDDGA--FYGLEKMEHLNLETNRLQAVNEGWLFGL-TSLEQLDLSYNAIQRIHIDSWS----FTQKL 319 (873)
T ss_pred hhhhhhhhcCcccccCcc--eeeecccceeecccchhhhhhccccccc-chhhhhccchhhhheeecchhh----hcccc
Confidence 444444333222211100 001236788888888855554 3333 8899999999999887654332 37899
Q ss_pred cEEeeccccCCcccc--ccccCCCccEEeEeccCCchhhhcccccCCCcccccccccceecccccccccccc---CCccC
Q 045686 747 RRLSIILCPDIQNLT--CLVHVPSLQFLSLSNCHSLEEIVGTYASGSSESRNYFSNLMAVDLDGLPTLRSIC---SGTVA 821 (885)
Q Consensus 747 ~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~---~~~~~ 821 (885)
+.|+|+++ .++.++ .+..|..|+.|+|+.| .+..+.. ..+.++.+|+.|+|+++..--.+. ..+..
T Consensus 320 ~~LdLs~N-~i~~l~~~sf~~L~~Le~LnLs~N-si~~l~e-------~af~~lssL~~LdLr~N~ls~~IEDaa~~f~g 390 (873)
T KOG4194|consen 320 KELDLSSN-RITRLDEGSFRVLSQLEELNLSHN-SIDHLAE-------GAFVGLSSLHKLDLRSNELSWCIEDAAVAFNG 390 (873)
T ss_pred eeEecccc-ccccCChhHHHHHHHhhhhccccc-chHHHHh-------hHHHHhhhhhhhcCcCCeEEEEEecchhhhcc
Confidence 99999998 688775 4667889999999998 4666644 577889999999999864322222 23556
Q ss_pred CCCccEEeeccCCCCCCcCCCCccccCCceEEEccH
Q 045686 822 FPSLQTLSITGCPSLKKLPFNSESARRSLISVRASA 857 (885)
Q Consensus 822 ~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~i~~~~ 857 (885)
+|+|++|.+.+ ++|+.+|....++...|.+++...
T Consensus 391 l~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~ 425 (873)
T KOG4194|consen 391 LPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGD 425 (873)
T ss_pred chhhhheeecC-ceeeecchhhhccCcccceecCCC
Confidence 99999999999 799999998888888887777643
No 8
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.84 E-value=6.7e-21 Score=237.56 Aligned_cols=323 Identities=20% Similarity=0.185 Sum_probs=175.4
Q ss_pred CccceEEEecccCcccccccccCCCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCchhhhcccccc
Q 045686 511 GWHEAVRLSLWGSSIDFLALVEAPSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPEEIGRLKNLH 590 (885)
Q Consensus 511 ~~~~~~~l~l~~~~i~~~~~~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~ 590 (885)
.++++++|++++|.+.. ......+++|++|++++|.+.. .+|.. ++.+++|++|+|++|.....+|..++++++|+
T Consensus 116 ~l~~L~~L~Ls~n~l~~--~~p~~~l~~L~~L~Ls~n~~~~-~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 191 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTG--SIPRGSIPNLETLDLSNNMLSG-EIPND-IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLE 191 (968)
T ss_pred cCCCCCEEECcCCcccc--ccCccccCCCCEEECcCCcccc-cCChH-HhcCCCCCEEECccCcccccCChhhhhCcCCC
Confidence 34566667766666543 1122345667777777766543 13333 66677777777777733446666777777777
Q ss_pred eeeccCCcc-cccChhhhccccccEeecCCcccccccCCcccccCcccceecccccccccccCcccccccchhhhcCccC
Q 045686 591 HLNLSNTSI-GCLPTAIKRLIKLKVLLLDGIQCHLSIPEGVISSLSSLQVFSCFSTELVELIDPLFNETAILDELNCLEH 669 (885)
Q Consensus 591 ~L~Ls~~~i-~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~ 669 (885)
+|++++|.+ ..+|..++++++|++|++++|.....+|.. ++++++|++|++++|.+.+. ....+..+++
T Consensus 192 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~---------~p~~l~~l~~ 261 (968)
T PLN00113 192 FLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVYNNLTGP---------IPSSLGNLKN 261 (968)
T ss_pred eeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEECcCceeccc---------cChhHhCCCC
Confidence 777777765 356666777777777777777644456655 66777777777777666542 2234455555
Q ss_pred CcceeEEEechh--hHHhhhCCCcccccceeEEeccccccc-cc--hhhhhhccceEEeeccCccceeecCCCCCccccc
Q 045686 670 LNDLSLTLFSTE--AVDKLLNSPKLQRCIRRLTIESSELLS-LE--LGLMLSHLEILRIKCGFMKRLNIDQGLNNRPSFS 744 (885)
Q Consensus 670 L~~L~l~~~~~~--~~~~l~~~~~~~~~L~~L~l~~~~~~~-~~--l~~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~l~ 744 (885)
|+.|++..+... ....+.. ..+|+.|++++|.+.. ++ +..+ ++|+.|+++.|.+....+... ..++
T Consensus 262 L~~L~L~~n~l~~~~p~~l~~----l~~L~~L~Ls~n~l~~~~p~~~~~l-~~L~~L~l~~n~~~~~~~~~~----~~l~ 332 (968)
T PLN00113 262 LQYLFLYQNKLSGPIPPSIFS----LQKLISLDLSDNSLSGEIPELVIQL-QNLEILHLFSNNFTGKIPVAL----TSLP 332 (968)
T ss_pred CCEEECcCCeeeccCchhHhh----ccCcCEEECcCCeeccCCChhHcCC-CCCcEEECCCCccCCcCChhH----hcCC
Confidence 666655443221 1111111 1256666666655221 11 2222 566666665554443221111 1255
Q ss_pred cccEEeeccccCCcccc-ccccCCCccEEeEeccCCchhhhccc----------------ccCCCcccccccccceeccc
Q 045686 745 ALRRLSIILCPDIQNLT-CLVHVPSLQFLSLSNCHSLEEIVGTY----------------ASGSSESRNYFSNLMAVDLD 807 (885)
Q Consensus 745 ~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~~~~l~~l~~~~----------------~~~~~~~~~~~~~L~~L~l~ 807 (885)
+|+.|++++|.....+| .++.+++|+.|++++|.....++... ....+..+..+++|+.|+++
T Consensus 333 ~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~ 412 (968)
T PLN00113 333 RLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQ 412 (968)
T ss_pred CCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECc
Confidence 66666666653222232 44555666666666554222221100 00111234567778888887
Q ss_pred cccccccccCCccCCCCccEEeeccCCCCCCcCCCCccccCCceEEEccH
Q 045686 808 GLPTLRSICSGTVAFPSLQTLSITGCPSLKKLPFNSESARRSLISVRASA 857 (885)
Q Consensus 808 ~~~~l~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~i~~~~ 857 (885)
+|.....++..+..+++|+.|++++|.--..+|.. .....+|..+....
T Consensus 413 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~ 461 (968)
T PLN00113 413 DNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSR-KWDMPSLQMLSLAR 461 (968)
T ss_pred CCEeeeECChhHhcCCCCCEEECcCCcccCccChh-hccCCCCcEEECcC
Confidence 77655566666677788888888876433334432 23456666666543
No 9
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.83 E-value=1.3e-20 Score=234.99 Aligned_cols=316 Identities=21% Similarity=0.186 Sum_probs=170.8
Q ss_pred ccceEEEecccCcccccccccCCCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCchhhhcccccce
Q 045686 512 WHEAVRLSLWGSSIDFLALVEAPSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPEEIGRLKNLHH 591 (885)
Q Consensus 512 ~~~~~~l~l~~~~i~~~~~~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~ 591 (885)
+++++.|++.+|.+.......+.++++|++|++++|.+.. .+|. .++++++|++|+|++|.....+|..++++++|++
T Consensus 163 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~p~-~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 240 (968)
T PLN00113 163 FSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVG-QIPR-ELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNH 240 (968)
T ss_pred CCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcC-cCCh-HHcCcCCccEEECcCCccCCcCChhHhcCCCCCE
Confidence 3444444444444332212233444445555554444332 0222 2444455555555544222244444455555555
Q ss_pred eeccCCcc-cccChhhhccccccEeecCCcccccccCCcccccCcccceecccccccccccCcccccccchhhhcCccCC
Q 045686 592 LNLSNTSI-GCLPTAIKRLIKLKVLLLDGIQCHLSIPEGVISSLSSLQVFSCFSTELVELIDPLFNETAILDELNCLEHL 670 (885)
Q Consensus 592 L~Ls~~~i-~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L 670 (885)
|++++|.+ ..+|..++++++|++|++++|.....+|.. +.++++|++|++++|.+.+. ....+..+++|
T Consensus 241 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~---------~p~~~~~l~~L 310 (968)
T PLN00113 241 LDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPS-IFSLQKLISLDLSDNSLSGE---------IPELVIQLQNL 310 (968)
T ss_pred EECcCceeccccChhHhCCCCCCEEECcCCeeeccCchh-HhhccCcCEEECcCCeeccC---------CChhHcCCCCC
Confidence 55555444 234444455555555555544433334433 44455555555554444321 22234455556
Q ss_pred cceeEEEechhh--HHhhhCCCcccccceeEEeccccccc-cc--hhhhhhccceEEeeccCccceeecCCCCCcccccc
Q 045686 671 NDLSLTLFSTEA--VDKLLNSPKLQRCIRRLTIESSELLS-LE--LGLMLSHLEILRIKCGFMKRLNIDQGLNNRPSFSA 745 (885)
Q Consensus 671 ~~L~l~~~~~~~--~~~l~~~~~~~~~L~~L~l~~~~~~~-~~--l~~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~l~~ 745 (885)
+.|++..+.... ...+.. .++|+.|++++|.... ++ +..+ ++|+.|+++.|.+....+... ..+++
T Consensus 311 ~~L~l~~n~~~~~~~~~~~~----l~~L~~L~L~~n~l~~~~p~~l~~~-~~L~~L~Ls~n~l~~~~p~~~----~~~~~ 381 (968)
T PLN00113 311 EILHLFSNNFTGKIPVALTS----LPRLQVLQLWSNKFSGEIPKNLGKH-NNLTVLDLSTNNLTGEIPEGL----CSSGN 381 (968)
T ss_pred cEEECCCCccCCcCChhHhc----CCCCCEEECcCCCCcCcCChHHhCC-CCCcEEECCCCeeEeeCChhH----hCcCC
Confidence 666554432211 111111 2356777777666321 11 2333 677777776666553222211 12577
Q ss_pred ccEEeeccccCCcccc-ccccCCCccEEeEeccCCchhhhcccccCCCcccccccccceeccccccccccccCCccCCCC
Q 045686 746 LRRLSIILCPDIQNLT-CLVHVPSLQFLSLSNCHSLEEIVGTYASGSSESRNYFSNLMAVDLDGLPTLRSICSGTVAFPS 824 (885)
Q Consensus 746 L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~p~ 824 (885)
|+.|++++|.....+| .++.+++|+.|++++|.....++ ..+..+++|+.|++++|.....++.....+++
T Consensus 382 L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p--------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 453 (968)
T PLN00113 382 LFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELP--------SEFTKLPLVYFLDISNNNLQGRINSRKWDMPS 453 (968)
T ss_pred CCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECC--------hhHhcCCCCCEEECcCCcccCccChhhccCCC
Confidence 8888888874333333 56788899999999886433332 35778999999999998766666666778999
Q ss_pred ccEEeeccCCCCCCcCCCCccccCCceEEEccHh
Q 045686 825 LQTLSITGCPSLKKLPFNSESARRSLISVRASAE 858 (885)
Q Consensus 825 L~~L~i~~C~~L~~lp~~~~~~~~~l~~i~~~~~ 858 (885)
|+.|++++|.-...+|... ...+|..++...+
T Consensus 454 L~~L~L~~n~~~~~~p~~~--~~~~L~~L~ls~n 485 (968)
T PLN00113 454 LQMLSLARNKFFGGLPDSF--GSKRLENLDLSRN 485 (968)
T ss_pred CcEEECcCceeeeecCccc--ccccceEEECcCC
Confidence 9999999998777787644 2366777766543
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.78 E-value=5.4e-19 Score=220.21 Aligned_cols=273 Identities=19% Similarity=0.271 Sum_probs=130.1
Q ss_pred CCcccEEecCCCCCCCcCchhhhcccccceeeccCC-cccccChhhhccccccEeecCCcccccccCCcccccCccccee
Q 045686 562 MDALEVLDLSYNLDLNQLPEEIGRLKNLHHLNLSNT-SIGCLPTAIKRLIKLKVLLLDGIQCHLSIPEGVISSLSSLQVF 640 (885)
Q Consensus 562 l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~Ls~~-~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L 640 (885)
+.+|++|+|++| .+..+|..+..+++|++|+|++| .+..+| .++.+++|++|++++|..+..+|.. +++|++|+.|
T Consensus 610 ~~~L~~L~L~~s-~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~s-i~~L~~L~~L 686 (1153)
T PLN03210 610 PENLVKLQMQGS-KLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSS-IQYLNKLEDL 686 (1153)
T ss_pred ccCCcEEECcCc-cccccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchh-hhccCCCCEE
Confidence 455666666665 55556655556666666666654 345555 3555666666666666555566655 5666666666
Q ss_pred cccccccccccCcccccccchhhhcCccCCcceeEEEechhhHHhhhCCCcccccceeEEeccccccccchhhhhhccce
Q 045686 641 SCFSTELVELIDPLFNETAILDELNCLEHLNDLSLTLFSTEAVDKLLNSPKLQRCIRRLTIESSELLSLELGLMLSHLEI 720 (885)
Q Consensus 641 ~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~L~~ 720 (885)
++++|...+.+|. . .++++|+.|.++.+.. +..+ +....+|+.|+++++.+..++....+++|..
T Consensus 687 ~L~~c~~L~~Lp~---------~-i~l~sL~~L~Lsgc~~--L~~~---p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~ 751 (1153)
T PLN03210 687 DMSRCENLEILPT---------G-INLKSLYRLNLSGCSR--LKSF---PDISTNISWLDLDETAIEEFPSNLRLENLDE 751 (1153)
T ss_pred eCCCCCCcCccCC---------c-CCCCCCCEEeCCCCCC--cccc---ccccCCcCeeecCCCcccccccccccccccc
Confidence 6665543332221 0 1345555555543321 1111 1122356666666555333221111133333
Q ss_pred EEeeccCccceeecCCC---CCccccccccEEeeccccCCcccc-ccccCCCccEEeEeccCCchhhhcccc--------
Q 045686 721 LRIKCGFMKRLNIDQGL---NNRPSFSALRRLSIILCPDIQNLT-CLVHVPSLQFLSLSNCHSLEEIVGTYA-------- 788 (885)
Q Consensus 721 L~l~~~~l~~l~~~~~~---~~~~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~~~~l~~l~~~~~-------- 788 (885)
|.+.......+...... .....+++|+.|+|++|+.+..+| .++.+++|+.|+|++|..++.++....
T Consensus 752 L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~ 831 (1153)
T PLN03210 752 LILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLD 831 (1153)
T ss_pred ccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEE
Confidence 33311000000000000 000012344555555544444433 344445555555555544444332000
Q ss_pred -c---CCCcccccccccceeccccccccccccCCccCCCCccEEeeccCCCCCCcCCCCccccCCceEEE
Q 045686 789 -S---GSSESRNYFSNLMAVDLDGLPTLRSICSGTVAFPSLQTLSITGCPSLKKLPFNSESARRSLISVR 854 (885)
Q Consensus 789 -~---~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~i~ 854 (885)
. .........++|+.|+|+++ .++.+|..+..+++|+.|++++|++|+.+|.... .+.+|..+.
T Consensus 832 Ls~c~~L~~~p~~~~nL~~L~Ls~n-~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~-~L~~L~~L~ 899 (1153)
T PLN03210 832 LSGCSRLRTFPDISTNISDLNLSRT-GIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNIS-KLKHLETVD 899 (1153)
T ss_pred CCCCCccccccccccccCEeECCCC-CCccChHHHhcCCCCCEEECCCCCCcCccCcccc-cccCCCeee
Confidence 0 00000001235556666553 4555666677899999999999999999998543 345554444
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.75 E-value=5.1e-20 Score=185.84 Aligned_cols=306 Identities=21% Similarity=0.272 Sum_probs=180.1
Q ss_pred cCcCCccceEEEecccCcccccccccCCCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCchhhhcc
Q 045686 507 NSFDGWHEAVRLSLWGSSIDFLALVEAPSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPEEIGRL 586 (885)
Q Consensus 507 ~~~~~~~~~~~l~l~~~~i~~~~~~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L 586 (885)
|+..++.++..+.++.|.+.. +|.|++|+.|..|.+..|.++. +|.....++.+|.+|||..| .++++|..++.|
T Consensus 200 ~~lg~l~~L~~LyL~~Nki~~--lPef~gcs~L~Elh~g~N~i~~--lpae~~~~L~~l~vLDLRdN-klke~Pde~clL 274 (565)
T KOG0472|consen 200 PELGGLESLELLYLRRNKIRF--LPEFPGCSLLKELHVGENQIEM--LPAEHLKHLNSLLVLDLRDN-KLKEVPDEICLL 274 (565)
T ss_pred hhhcchhhhHHHHhhhccccc--CCCCCccHHHHHHHhcccHHHh--hHHHHhcccccceeeecccc-ccccCchHHHHh
Confidence 445666778888888888888 7888889999999998888888 88887778888999999988 888999999989
Q ss_pred cccceeeccCCcccccChhhhccccccEeecCCcccccccCCcccccCc--ccceeccc----cccc-ccccCcc-cccc
Q 045686 587 KNLHHLNLSNTSIGCLPTAIKRLIKLKVLLLDGIQCHLSIPEGVISSLS--SLQVFSCF----STEL-VELIDPL-FNET 658 (885)
Q Consensus 587 ~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~--~L~~L~l~----~~~~-~~~~~~~-~~~~ 658 (885)
.+|.+||+|+|.|..+|.+++++ .|+.|-+.||+ +.++-..++.+=+ -|++|.-. +-+- .+.-... -...
T Consensus 275 rsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNP-lrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~ 352 (565)
T KOG0472|consen 275 RSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNP-LRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPS 352 (565)
T ss_pred hhhhhhcccCCccccCCcccccc-eeeehhhcCCc-hHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCC
Confidence 89999999999999999888888 88888888887 6655544222211 12222110 0000 0000000 0000
Q ss_pred cchhhhcCccCCcceeEEEechhhHHhh-hCCCcccccceeEEeccccccccc--hhhhhhccceEEeeccCccceeecC
Q 045686 659 AILDELNCLEHLNDLSLTLFSTEAVDKL-LNSPKLQRCIRRLTIESSELLSLE--LGLMLSHLEILRIKCGFMKRLNIDQ 735 (885)
Q Consensus 659 ~~l~~l~~L~~L~~L~l~~~~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~~~--l~~~~~~L~~L~l~~~~l~~l~~~~ 735 (885)
..+.....+.+.+.|+++......++.- .... ...-....+++.|.+..++ +..+....+.+.++.|.+..++...
T Consensus 353 ~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~-~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l 431 (565)
T KOG0472|consen 353 ESFPDIYAIITTKILDVSDKQLTLVPDEVFEAA-KSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLEL 431 (565)
T ss_pred CcccchhhhhhhhhhcccccccccCCHHHHHHh-hhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHH
Confidence 1111222334445555544332222211 1110 0112556666666633332 2222112222222333333222222
Q ss_pred CCCCccccccccEEeeccccCCcccc-ccccCCCccEEeEeccC----------------------CchhhhcccccCCC
Q 045686 736 GLNNRPSFSALRRLSIILCPDIQNLT-CLVHVPSLQFLSLSNCH----------------------SLEEIVGTYASGSS 792 (885)
Q Consensus 736 ~~~~~~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~~~----------------------~l~~l~~~~~~~~~ 792 (885)
..+++|..|+++++ .+.++| .++.+..|+.|+|+.|. .+..+..
T Consensus 432 -----~~l~kLt~L~L~NN-~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~------- 498 (565)
T KOG0472|consen 432 -----SQLQKLTFLDLSNN-LLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDP------- 498 (565)
T ss_pred -----Hhhhcceeeecccc-hhhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccCh-------
Confidence 12455555555555 333433 34445555555555542 3333322
Q ss_pred cccccccccceeccccccccccccCCccCCCCccEEeeccCC
Q 045686 793 ESRNYFSNLMAVDLDGLPTLRSICSGTVAFPSLQTLSITGCP 834 (885)
Q Consensus 793 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~p~L~~L~i~~C~ 834 (885)
....++.+|.+|++.+ +.+..+|...++|.+|++|++.+.|
T Consensus 499 ~~l~nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 499 SGLKNMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred HHhhhhhhcceeccCC-CchhhCChhhccccceeEEEecCCc
Confidence 3467888999999987 5678888889999999999999864
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.72 E-value=3.3e-20 Score=187.13 Aligned_cols=237 Identities=26% Similarity=0.343 Sum_probs=102.9
Q ss_pred ceEEEecccCcccccccccCCCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCchhhhcccccceee
Q 045686 514 EAVRLSLWGSSIDFLALVEAPSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPEEIGRLKNLHHLN 593 (885)
Q Consensus 514 ~~~~l~l~~~~i~~~~~~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~ 593 (885)
.+..+.+++|...+. .+.+..+..+..|+.++|.+.. +|.. ..++..|+.|+.++| ....+|++++.+..|..|+
T Consensus 69 ~l~vl~~~~n~l~~l-p~aig~l~~l~~l~vs~n~ls~--lp~~-i~s~~~l~~l~~s~n-~~~el~~~i~~~~~l~dl~ 143 (565)
T KOG0472|consen 69 CLTVLNVHDNKLSQL-PAAIGELEALKSLNVSHNKLSE--LPEQ-IGSLISLVKLDCSSN-ELKELPDSIGRLLDLEDLD 143 (565)
T ss_pred ceeEEEeccchhhhC-CHHHHHHHHHHHhhcccchHhh--ccHH-Hhhhhhhhhhhcccc-ceeecCchHHHHhhhhhhh
Confidence 344444444444432 2233344444555555554444 4444 344445555555555 4444555555555555555
Q ss_pred ccCCcccccChhhhccccccEeecCCcccccccCCcccccCcccceecccccccccccCcccccccchhhhcCccCCcce
Q 045686 594 LSNTSIGCLPTAIKRLIKLKVLLLDGIQCHLSIPEGVISSLSSLQVFSCFSTELVELIDPLFNETAILDELNCLEHLNDL 673 (885)
Q Consensus 594 Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~L 673 (885)
..+|++.++|.++.++.+|..|++.+|. +..+|+. .-+++.|++|++..|-+.. .+.+++.+.+|..|
T Consensus 144 ~~~N~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~-~i~m~~L~~ld~~~N~L~t----------lP~~lg~l~~L~~L 211 (565)
T KOG0472|consen 144 ATNNQISSLPEDMVNLSKLSKLDLEGNK-LKALPEN-HIAMKRLKHLDCNSNLLET----------LPPELGGLESLELL 211 (565)
T ss_pred ccccccccCchHHHHHHHHHHhhccccc-hhhCCHH-HHHHHHHHhcccchhhhhc----------CChhhcchhhhHHH
Confidence 5555555555555555555555555543 4444444 2224555555544443321 22333334444333
Q ss_pred eEEEechhhHHhhhCCCcccccceeEEeccccccccc--hhhhhhccceEEeeccCccceeecCCCCCccccccccEEee
Q 045686 674 SLTLFSTEAVDKLLNSPKLQRCIRRLTIESSELLSLE--LGLMLSHLEILRIKCGFMKRLNIDQGLNNRPSFSALRRLSI 751 (885)
Q Consensus 674 ~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~--l~~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~l~~L~~L~L 751 (885)
++..+....++.+.. ++.|.+|+++.|.+..++ ....++++..|++..|.++++|.+... +.+|.+|++
T Consensus 212 yL~~Nki~~lPef~g----cs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~cl-----LrsL~rLDl 282 (565)
T KOG0472|consen 212 YLRRNKIRFLPEFPG----CSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICL-----LRSLERLDL 282 (565)
T ss_pred HhhhcccccCCCCCc----cHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHH-----hhhhhhhcc
Confidence 333333222222211 123444444444322221 222224444444444555554444433 444555555
Q ss_pred ccccCCcccc-ccccCCCccEEeEeccC
Q 045686 752 ILCPDIQNLT-CLVHVPSLQFLSLSNCH 778 (885)
Q Consensus 752 ~~c~~l~~l~-~l~~l~~L~~L~L~~~~ 778 (885)
+++ .++.+| .+|++ .|+.|.+.||+
T Consensus 283 SNN-~is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 283 SNN-DISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred cCC-ccccCCcccccc-eeeehhhcCCc
Confidence 544 344432 34444 44455454443
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.66 E-value=1.1e-17 Score=186.33 Aligned_cols=100 Identities=28% Similarity=0.384 Sum_probs=70.4
Q ss_pred ceEEEecccCcccccccccCCCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCchhhhcccccceee
Q 045686 514 EAVRLSLWGSSIDFLALVEAPSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPEEIGRLKNLHHLN 593 (885)
Q Consensus 514 ~~~~l~l~~~~i~~~~~~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~ 593 (885)
++.+|++++|.+..- ...+..+++|+.|.++.|.+.. +|.+ ..++++|++|.|.+| ....+|.++..+++|++|+
T Consensus 46 ~L~~l~lsnn~~~~f-p~~it~l~~L~~ln~s~n~i~~--vp~s-~~~~~~l~~lnL~~n-~l~~lP~~~~~lknl~~Ld 120 (1081)
T KOG0618|consen 46 KLKSLDLSNNQISSF-PIQITLLSHLRQLNLSRNYIRS--VPSS-CSNMRNLQYLNLKNN-RLQSLPASISELKNLQYLD 120 (1081)
T ss_pred eeEEeeccccccccC-CchhhhHHHHhhcccchhhHhh--Cchh-hhhhhcchhheeccc-hhhcCchhHHhhhcccccc
Confidence 477788887776652 1234667788888888887777 7755 677888888888888 7788888888888888888
Q ss_pred ccCCcccccChhhhccccccEeecC
Q 045686 594 LSNTSIGCLPTAIKRLIKLKVLLLD 618 (885)
Q Consensus 594 Ls~~~i~~lp~~i~~L~~L~~L~l~ 618 (885)
+|+|.+..+|.-+..++.+..+..+
T Consensus 121 lS~N~f~~~Pl~i~~lt~~~~~~~s 145 (1081)
T KOG0618|consen 121 LSFNHFGPIPLVIEVLTAEEELAAS 145 (1081)
T ss_pred cchhccCCCchhHHhhhHHHHHhhh
Confidence 8888777777655444433333333
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.60 E-value=1.6e-15 Score=175.18 Aligned_cols=112 Identities=23% Similarity=0.231 Sum_probs=53.7
Q ss_pred ceEEEecccCcccccccccCCCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCchhhhcccccceee
Q 045686 514 EAVRLSLWGSSIDFLALVEAPSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPEEIGRLKNLHHLN 593 (885)
Q Consensus 514 ~~~~l~l~~~~i~~~~~~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~ 593 (885)
+++.|++..|.++. +|.. .++|++|++++|.++. +|.. .++|+.|++++| .+..+|.. ..+|+.|+
T Consensus 223 ~L~~L~L~~N~Lt~--LP~l--p~~Lk~LdLs~N~Lts--LP~l----p~sL~~L~Ls~N-~L~~Lp~l---p~~L~~L~ 288 (788)
T PRK15387 223 HITTLVIPDNNLTS--LPAL--PPELRTLEVSGNQLTS--LPVL----PPGLLELSIFSN-PLTHLPAL---PSGLCKLW 288 (788)
T ss_pred CCCEEEccCCcCCC--CCCC--CCCCcEEEecCCccCc--ccCc----ccccceeeccCC-chhhhhhc---hhhcCEEE
Confidence 45555555555554 3322 3455555555555554 4431 245555555555 45544432 13455555
Q ss_pred ccCCcccccChhhhccccccEeecCCcccccccCCcccccCcccceeccccccc
Q 045686 594 LSNTSIGCLPTAIKRLIKLKVLLLDGIQCHLSIPEGVISSLSSLQVFSCFSTEL 647 (885)
Q Consensus 594 Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~ 647 (885)
+++|++..+|.. +++|++|++++|. +..+|.. . .+|+.|++++|.+
T Consensus 289 Ls~N~Lt~LP~~---p~~L~~LdLS~N~-L~~Lp~l-p---~~L~~L~Ls~N~L 334 (788)
T PRK15387 289 IFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPAL-P---SELCKLWAYNNQL 334 (788)
T ss_pred CcCCcccccccc---ccccceeECCCCc-cccCCCC-c---ccccccccccCcc
Confidence 555555555532 3455555555553 4444431 1 2344445555444
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.58 E-value=1.6e-16 Score=176.97 Aligned_cols=296 Identities=22% Similarity=0.225 Sum_probs=179.4
Q ss_pred eEEEecccCcccccccccCCCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCchhhhcccccceeec
Q 045686 515 AVRLSLWGSSIDFLALVEAPSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPEEIGRLKNLHHLNL 594 (885)
Q Consensus 515 ~~~l~l~~~~i~~~~~~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~L 594 (885)
+..+++..|.+-..+++...++-+|++|++++|.+.. +|.. +..+.+|+.|+++.| .|..+|.+++++.+|++|+|
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~--fp~~-it~l~~L~~ln~s~n-~i~~vp~s~~~~~~l~~lnL 98 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISS--FPIQ-ITLLSHLRQLNLSRN-YIRSVPSSCSNMRNLQYLNL 98 (1081)
T ss_pred HHhhhccccccccCchHHhhheeeeEEeecccccccc--CCch-hhhHHHHhhcccchh-hHhhCchhhhhhhcchhhee
Confidence 4455555555444334444556668888888887777 6655 567788888888888 88888888888888888888
Q ss_pred cCCcccccChhhhccccccEeecCCcccccccCCcccccCcccceecccccccccccCccc----------ccccchhhh
Q 045686 595 SNTSIGCLPTAIKRLIKLKVLLLDGIQCHLSIPEGVISSLSSLQVFSCFSTELVELIDPLF----------NETAILDEL 664 (885)
Q Consensus 595 s~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~----------~~~~~l~~l 664 (885)
.+|.+..+|.++..+.+|++|+++.|. ...+|.- +..++.+..+..++|......+... -....+.++
T Consensus 99 ~~n~l~~lP~~~~~lknl~~LdlS~N~-f~~~Pl~-i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i 176 (1081)
T KOG0618|consen 99 KNNRLQSLPASISELKNLQYLDLSFNH-FGPIPLV-IEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDI 176 (1081)
T ss_pred ccchhhcCchhHHhhhcccccccchhc-cCCCchh-HHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcch
Confidence 888888888888888888888888886 6677765 6777777777777762111100000 011122222
Q ss_pred cCccCCcceeEEEechhhHHhhhCCCcccccceeEEeccccccccchhhhhhccceEEeeccCccceeecCCCCCccccc
Q 045686 665 NCLEHLNDLSLTLFSTEAVDKLLNSPKLQRCIRRLTIESSELLSLELGLMLSHLEILRIKCGFMKRLNIDQGLNNRPSFS 744 (885)
Q Consensus 665 ~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~l~ 744 (885)
.++++ .|++..+... .-.+... .+|+.|..+.+.+..+.+.. ++|+.|+...|.+..+.... ...
T Consensus 177 ~~l~~--~ldLr~N~~~-~~dls~~----~~l~~l~c~rn~ls~l~~~g--~~l~~L~a~~n~l~~~~~~p------~p~ 241 (1081)
T KOG0618|consen 177 YNLTH--QLDLRYNEME-VLDLSNL----ANLEVLHCERNQLSELEISG--PSLTALYADHNPLTTLDVHP------VPL 241 (1081)
T ss_pred hhhhe--eeecccchhh-hhhhhhc----cchhhhhhhhcccceEEecC--cchheeeeccCcceeecccc------ccc
Confidence 22222 2333333222 1111111 12333333333333333222 55666666555555333222 357
Q ss_pred cccEEeeccccCCcccc-ccccCCCccEEeEeccCCchhhhcccccCCCcccccccccceeccccccccccccCCccCCC
Q 045686 745 ALRRLSIILCPDIQNLT-CLVHVPSLQFLSLSNCHSLEEIVGTYASGSSESRNYFSNLMAVDLDGLPTLRSICSGTVAFP 823 (885)
Q Consensus 745 ~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~p 823 (885)
+|+.++++.+ ++..+| |++.+++|+.|++..|. +..++. ......+|+.|.+.+| .++.++.....+.
T Consensus 242 nl~~~dis~n-~l~~lp~wi~~~~nle~l~~n~N~-l~~lp~--------ri~~~~~L~~l~~~~n-el~yip~~le~~~ 310 (1081)
T KOG0618|consen 242 NLQYLDISHN-NLSNLPEWIGACANLEALNANHNR-LVALPL--------RISRITSLVSLSAAYN-ELEYIPPFLEGLK 310 (1081)
T ss_pred cceeeecchh-hhhcchHHHHhcccceEecccchh-HHhhHH--------HHhhhhhHHHHHhhhh-hhhhCCCcccccc
Confidence 8888888888 566654 88888899999888874 344433 3445566777777664 5666666666677
Q ss_pred CccEEeeccCCCCCCcCCCC
Q 045686 824 SLQTLSITGCPSLKKLPFNS 843 (885)
Q Consensus 824 ~L~~L~i~~C~~L~~lp~~~ 843 (885)
+|++|++.. ++|..+|...
T Consensus 311 sL~tLdL~~-N~L~~lp~~~ 329 (1081)
T KOG0618|consen 311 SLRTLDLQS-NNLPSLPDNF 329 (1081)
T ss_pred eeeeeeehh-ccccccchHH
Confidence 777777777 5677777643
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.55 E-value=8.3e-15 Score=169.26 Aligned_cols=253 Identities=23% Similarity=0.214 Sum_probs=180.1
Q ss_pred EEEecccCcccccccccCCCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCchhhhcccccceeecc
Q 045686 516 VRLSLWGSSIDFLALVEAPSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPEEIGRLKNLHHLNLS 595 (885)
Q Consensus 516 ~~l~l~~~~i~~~~~~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~Ls 595 (885)
..|+++.+.++. +|... .++|+.|.+.+|.++. +|.. +++|++|+|++| .++.+|.. .++|++|+++
T Consensus 204 ~~LdLs~~~Lts--LP~~l-~~~L~~L~L~~N~Lt~--LP~l----p~~Lk~LdLs~N-~LtsLP~l---p~sL~~L~Ls 270 (788)
T PRK15387 204 AVLNVGESGLTT--LPDCL-PAHITTLVIPDNNLTS--LPAL----PPELRTLEVSGN-QLTSLPVL---PPGLLELSIF 270 (788)
T ss_pred cEEEcCCCCCCc--CCcch-hcCCCEEEccCCcCCC--CCCC----CCCCcEEEecCC-ccCcccCc---ccccceeecc
Confidence 456777777765 44321 2578899999999988 7752 588999999999 88888863 4688999999
Q ss_pred CCcccccChhhhccccccEeecCCcccccccCCcccccCcccceecccccccccccCcccccccchhhhcCccCCcceeE
Q 045686 596 NTSIGCLPTAIKRLIKLKVLLLDGIQCHLSIPEGVISSLSSLQVFSCFSTELVELIDPLFNETAILDELNCLEHLNDLSL 675 (885)
Q Consensus 596 ~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~L~l 675 (885)
+|.+..+|.. ..+|+.|++++|. +..+|.. +++|++|++++|++.+. |. + ..+|+.|.+
T Consensus 271 ~N~L~~Lp~l---p~~L~~L~Ls~N~-Lt~LP~~----p~~L~~LdLS~N~L~~L-p~----------l--p~~L~~L~L 329 (788)
T PRK15387 271 SNPLTHLPAL---PSGLCKLWIFGNQ-LTSLPVL----PPGLQELSVSDNQLASL-PA----------L--PSELCKLWA 329 (788)
T ss_pred CCchhhhhhc---hhhcCEEECcCCc-ccccccc----ccccceeECCCCccccC-CC----------C--ccccccccc
Confidence 9999888863 3678899999996 7788863 46899999999987641 11 1 123445555
Q ss_pred EEechhhHHhhhCCCcccccceeEEeccccccccchhhhhhccceEEeeccCccceeecCCCCCccccccccEEeecccc
Q 045686 676 TLFSTEAVDKLLNSPKLQRCIRRLTIESSELLSLELGLMLSHLEILRIKCGFMKRLNIDQGLNNRPSFSALRRLSIILCP 755 (885)
Q Consensus 676 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~l~~L~~L~L~~c~ 755 (885)
..+....++. +..+|+.|++++|.+..++. ..++|+.|++++|.+..++.. +++|+.|++++|
T Consensus 330 s~N~L~~LP~------lp~~Lq~LdLS~N~Ls~LP~--lp~~L~~L~Ls~N~L~~LP~l--------~~~L~~LdLs~N- 392 (788)
T PRK15387 330 YNNQLTSLPT------LPSGLQELSVSDNQLASLPT--LPSELYKLWAYNNRLTSLPAL--------PSGLKELIVSGN- 392 (788)
T ss_pred ccCccccccc------cccccceEecCCCccCCCCC--CCcccceehhhccccccCccc--------ccccceEEecCC-
Confidence 5444333322 23478899999888665542 236788888888888765521 467889999888
Q ss_pred CCccccccccCCCccEEeEeccCCchhhhcccccCCCcccccccccceeccccccccccccCCccCCCCccEEeeccCC
Q 045686 756 DIQNLTCLVHVPSLQFLSLSNCHSLEEIVGTYASGSSESRNYFSNLMAVDLDGLPTLRSICSGTVAFPSLQTLSITGCP 834 (885)
Q Consensus 756 ~l~~l~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~p~L~~L~i~~C~ 834 (885)
.++.+|.. .++|+.|++++|. +..++. .+++|+.|+++++ .+..+|..+..+++|+.|++++++
T Consensus 393 ~Lt~LP~l--~s~L~~LdLS~N~-LssIP~-----------l~~~L~~L~Ls~N-qLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 393 RLTSLPVL--PSELKELMVSGNR-LTSLPM-----------LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred cccCCCCc--ccCCCEEEccCCc-CCCCCc-----------chhhhhhhhhccC-cccccChHHhhccCCCeEECCCCC
Confidence 67776643 4688999999884 554432 1346788888874 567788777888889999998864
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.53 E-value=1.3e-14 Score=168.96 Aligned_cols=118 Identities=25% Similarity=0.406 Sum_probs=60.0
Q ss_pred ceEEEecccCcccccccccCCCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCchhhhcccccceee
Q 045686 514 EAVRLSLWGSSIDFLALVEAPSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPEEIGRLKNLHHLN 593 (885)
Q Consensus 514 ~~~~l~l~~~~i~~~~~~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~ 593 (885)
.++.|++.+|.++. ++.. .+++|++|++++|.++. +|..+ ..+|+.|+|++| .+..+|..+. .+|++|+
T Consensus 200 ~L~~L~Ls~N~Lts--LP~~-l~~nL~~L~Ls~N~Lts--LP~~l---~~~L~~L~Ls~N-~L~~LP~~l~--s~L~~L~ 268 (754)
T PRK15370 200 QITTLILDNNELKS--LPEN-LQGNIKTLYANSNQLTS--IPATL---PDTIQEMELSIN-RITELPERLP--SALQSLD 268 (754)
T ss_pred CCcEEEecCCCCCc--CChh-hccCCCEEECCCCcccc--CChhh---hccccEEECcCC-ccCcCChhHh--CCCCEEE
Confidence 45555555555554 2221 12455555555555554 55432 134555666655 5555555443 3555666
Q ss_pred ccCCcccccChhhhccccccEeecCCcccccccCCcccccCcccceecccccccc
Q 045686 594 LSNTSIGCLPTAIKRLIKLKVLLLDGIQCHLSIPEGVISSLSSLQVFSCFSTELV 648 (885)
Q Consensus 594 Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 648 (885)
+++|++..+|..+. ++|++|++++|. +..+|.. +. ++|+.|++++|.+.
T Consensus 269 Ls~N~L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~-lp--~sL~~L~Ls~N~Lt 317 (754)
T PRK15370 269 LFHNKISCLPENLP--EELRYLSVYDNS-IRTLPAH-LP--SGITHLNVQSNSLT 317 (754)
T ss_pred CcCCccCccccccC--CCCcEEECCCCc-cccCccc-ch--hhHHHHHhcCCccc
Confidence 66555555554432 355566665554 4455543 21 34555555555543
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.52 E-value=1.4e-14 Score=168.74 Aligned_cols=248 Identities=18% Similarity=0.215 Sum_probs=160.6
Q ss_pred ceEEEecccCcccccccccCCCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCchhhhcccccceee
Q 045686 514 EAVRLSLWGSSIDFLALVEAPSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPEEIGRLKNLHHLN 593 (885)
Q Consensus 514 ~~~~l~l~~~~i~~~~~~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~ 593 (885)
+...+.+.++.++. +|.. -.++|+.|++++|.++. +|..++ .+|++|++++| .++.+|..+. .+|+.|+
T Consensus 179 ~~~~L~L~~~~Lts--LP~~-Ip~~L~~L~Ls~N~Lts--LP~~l~---~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~ 247 (754)
T PRK15370 179 NKTELRLKILGLTT--IPAC-IPEQITTLILDNNELKS--LPENLQ---GNIKTLYANSN-QLTSIPATLP--DTIQEME 247 (754)
T ss_pred CceEEEeCCCCcCc--CCcc-cccCCcEEEecCCCCCc--CChhhc---cCCCEEECCCC-ccccCChhhh--ccccEEE
Confidence 34567777777666 4431 12579999999999998 887653 58999999999 8899998664 4799999
Q ss_pred ccCCcccccChhhhccccccEeecCCcccccccCCcccccCcccceecccccccccccCcccccccchhhhcCccCCcce
Q 045686 594 LSNTSIGCLPTAIKRLIKLKVLLLDGIQCHLSIPEGVISSLSSLQVFSCFSTELVELIDPLFNETAILDELNCLEHLNDL 673 (885)
Q Consensus 594 Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~L 673 (885)
|++|++..+|..+. .+|++|++++|. +..+|.. +. ++|++|++++|++... |. .+. .+|+.|
T Consensus 248 Ls~N~L~~LP~~l~--s~L~~L~Ls~N~-L~~LP~~-l~--~sL~~L~Ls~N~Lt~L-P~---------~lp--~sL~~L 309 (754)
T PRK15370 248 LSINRITELPERLP--SALQSLDLFHNK-ISCLPEN-LP--EELRYLSVYDNSIRTL-PA---------HLP--SGITHL 309 (754)
T ss_pred CcCCccCcCChhHh--CCCCEEECcCCc-cCccccc-cC--CCCcEEECCCCccccC-cc---------cch--hhHHHH
Confidence 99999999998775 589999999986 7788876 43 5899999999987641 11 111 234455
Q ss_pred eEEEechhhHHhhhCCCcccccceeEEeccccccccchhhhhhccceEEeeccCccceeecCCCCCccccccccEEeecc
Q 045686 674 SLTLFSTEAVDKLLNSPKLQRCIRRLTIESSELLSLELGLMLSHLEILRIKCGFMKRLNIDQGLNNRPSFSALRRLSIIL 753 (885)
Q Consensus 674 ~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~l~~L~~L~L~~ 753 (885)
++..+....++. ...++|+.|.+++|.+..++.. .+++|+.|+++.|.+..++... .++|+.|+|++
T Consensus 310 ~Ls~N~Lt~LP~-----~l~~sL~~L~Ls~N~Lt~LP~~-l~~sL~~L~Ls~N~L~~LP~~l-------p~~L~~LdLs~ 376 (754)
T PRK15370 310 NVQSNSLTALPE-----TLPPGLKTLEAGENALTSLPAS-LPPELQVLDVSKNQITVLPETL-------PPTITTLDVSR 376 (754)
T ss_pred HhcCCccccCCc-----cccccceeccccCCccccCChh-hcCcccEEECCCCCCCcCChhh-------cCCcCEEECCC
Confidence 554443332221 1123677777777765544321 2257777777666666554321 35677777777
Q ss_pred ccCCccccccccCCCccEEeEeccCCchhhhcccccCCCcccccccccceecccccc
Q 045686 754 CPDIQNLTCLVHVPSLQFLSLSNCHSLEEIVGTYASGSSESRNYFSNLMAVDLDGLP 810 (885)
Q Consensus 754 c~~l~~l~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~ 810 (885)
| .++.+|.- -.++|+.|++++|. +..++.. .+.....+|++..|++.+++
T Consensus 377 N-~Lt~LP~~-l~~sL~~LdLs~N~-L~~LP~s----l~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 377 N-ALTNLPEN-LPAALQIMQASRNN-LVRLPES----LPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred C-cCCCCCHh-HHHHHHHHhhccCC-cccCchh----HHHHhhcCCCccEEEeeCCC
Confidence 7 46555421 12357777777763 4444320 11122334666777777655
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.48 E-value=9.8e-16 Score=137.21 Aligned_cols=157 Identities=20% Similarity=0.334 Sum_probs=119.5
Q ss_pred cCcCCccceEEEecccCcccccccccCCCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCchhhhcc
Q 045686 507 NSFDGWHEAVRLSLWGSSIDFLALVEAPSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPEEIGRL 586 (885)
Q Consensus 507 ~~~~~~~~~~~l~l~~~~i~~~~~~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L 586 (885)
|....+..++++.+++|.++.. .|.+..+.+|++|.+++|.+.. +|.+ +++++.||.|+++-| .+..+|..+|.+
T Consensus 27 ~gLf~~s~ITrLtLSHNKl~~v-ppnia~l~nlevln~~nnqie~--lp~~-issl~klr~lnvgmn-rl~~lprgfgs~ 101 (264)
T KOG0617|consen 27 PGLFNMSNITRLTLSHNKLTVV-PPNIAELKNLEVLNLSNNQIEE--LPTS-ISSLPKLRILNVGMN-RLNILPRGFGSF 101 (264)
T ss_pred ccccchhhhhhhhcccCceeec-CCcHHHhhhhhhhhcccchhhh--cChh-hhhchhhhheecchh-hhhcCccccCCC
Confidence 5555566788888888877653 4566778888888888888887 7776 678888888888877 777888888888
Q ss_pred cccceeeccCCcc--cccChhhhccccccEeecCCcccccccCCcccccCcccceecccccccccccCcccccccchhhh
Q 045686 587 KNLHHLNLSNTSI--GCLPTAIKRLIKLKVLLLDGIQCHLSIPEGVISSLSSLQVFSCFSTELVELIDPLFNETAILDEL 664 (885)
Q Consensus 587 ~~L~~L~Ls~~~i--~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l 664 (885)
+-|+.|||.+|++ ..+|..|..++.|+.|++++|. .+-+|.+ +++|++||.|.+..|.+.+ ...++
T Consensus 102 p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~d-vg~lt~lqil~lrdndll~----------lpkei 169 (264)
T KOG0617|consen 102 PALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPD-VGKLTNLQILSLRDNDLLS----------LPKEI 169 (264)
T ss_pred chhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChh-hhhhcceeEEeeccCchhh----------CcHHH
Confidence 8888888888876 5678778888888888888886 6777877 7888888888888776653 45667
Q ss_pred cCccCCcceeEEEech
Q 045686 665 NCLEHLNDLSLTLFST 680 (885)
Q Consensus 665 ~~L~~L~~L~l~~~~~ 680 (885)
+.|..|+.|.+..+..
T Consensus 170 g~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 170 GDLTRLRELHIQGNRL 185 (264)
T ss_pred HHHHHHHHHhccccee
Confidence 7777777666655443
No 20
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.45 E-value=2.7e-12 Score=159.58 Aligned_cols=298 Identities=14% Similarity=0.197 Sum_probs=183.1
Q ss_pred ccCCCCccchhHHHHHHHHHhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcC-cccHHHHHHHHH
Q 045686 148 ERPIGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSR-DANLEKIQESIL 226 (885)
Q Consensus 148 ~~~~~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~i~ 226 (885)
|.....+|-|+.-.+.+.+ ....+++.|+|++|.||||++..+.... . .++|+++.. +.+.......++
T Consensus 10 p~~~~~~~~R~rl~~~l~~---~~~~~~~~v~apaG~GKTtl~~~~~~~~----~---~~~w~~l~~~d~~~~~f~~~l~ 79 (903)
T PRK04841 10 PVRLHNTVVRERLLAKLSG---ANNYRLVLVTSPAGYGKTTLISQWAAGK----N---NLGWYSLDESDNQPERFASYLI 79 (903)
T ss_pred CCCccccCcchHHHHHHhc---ccCCCeEEEECCCCCCHHHHHHHHHHhC----C---CeEEEecCcccCCHHHHHHHHH
Confidence 3344567888866665532 2467899999999999999999988532 2 589999864 445566666666
Q ss_pred HHcCCCccc-----------cCCCChhHHHHHHHHHhc--CCCeEEEEecCCCccccc--cccccccccccCCCCCEEEE
Q 045686 227 RRFEIPDQM-----------WIGKDEDGRANEILSNLR--GKKFVLLLDDVWERLDLS--KVGVSDLLDDSSQTGSKIVF 291 (885)
Q Consensus 227 ~~l~~~~~~-----------~~~~~~~~~~~~l~~~l~--~k~~LlVLDdv~~~~~~~--~~~~~~~l~~~~~~gs~Iiv 291 (885)
..++..... ............+...+. +.+++|||||+....+.. .....+. .....+.++||
T Consensus 80 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~--~~~~~~~~lv~ 157 (903)
T PRK04841 80 AALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFL--RHQPENLTLVV 157 (903)
T ss_pred HHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHH--HhCCCCeEEEE
Confidence 666321110 000122233333444443 678999999997653221 1111111 12345678889
Q ss_pred EcCChh-H--Hhhhcccceeecc----CCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCchhHHHHHHHHHhc
Q 045686 292 TTRSEE-V--CGEMGARRRFRVE----CLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPLALVTIGHAMAS 364 (885)
Q Consensus 292 TTR~~~-v--~~~~~~~~~~~l~----~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~l~~ 364 (885)
|||... . ...........+. +|+.+|+.++|....+... + .+....|.+.|+|.|+++..++..++.
T Consensus 158 ~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~---~---~~~~~~l~~~t~Gwp~~l~l~~~~~~~ 231 (903)
T PRK04841 158 LSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPI---E---AAESSRLCDDVEGWATALQLIALSARQ 231 (903)
T ss_pred EeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCC---C---HHHHHHHHHHhCChHHHHHHHHHHHhh
Confidence 999842 1 1111112244555 8999999999988776432 1 234789999999999999998877755
Q ss_pred CCChhhHHHHHHHHhcCcccccCC-CCcccccccc-cccccccchhhhHHhhhccCCCCceecHHHHHHHHHhcCcCCCC
Q 045686 365 RMGPTQWRYAVGELQRYPFKFAGM-GNSVFPILRF-SYDSLREDIFKTCFLYCALFPEEHNITKDELIQLWIGEGFLNGI 442 (885)
Q Consensus 365 ~~~~~~w~~~~~~l~~~~~~~~~~-~~~~~~~l~~-sy~~L~~~~~k~cfl~~s~fp~~~~i~~~~li~~w~a~g~~~~~ 442 (885)
..... ......+ .+. ...+...+.- .++.||++ .+..++..|+++ .++.+ +.. .+.
T Consensus 232 ~~~~~--~~~~~~~-------~~~~~~~~~~~l~~~v~~~l~~~-~~~~l~~~a~~~---~~~~~-l~~-----~l~--- 289 (903)
T PRK04841 232 NNSSL--HDSARRL-------AGINASHLSDYLVEEVLDNVDLE-TRHFLLRCSVLR---SMNDA-LIV-----RVT--- 289 (903)
T ss_pred CCCch--hhhhHhh-------cCCCchhHHHHHHHHHHhcCCHH-HHHHHHHhcccc---cCCHH-HHH-----HHc---
Confidence 32100 0111111 110 1123333322 37899997 899999999986 33433 222 111
Q ss_pred CCCChHHHHHHHHHHhcccc-cCCCCCCcEEEehhHHHHHHHHhh
Q 045686 443 SPRDQGEYIIESLKLACLLE-RGENSEDSVKMHNLIRDMALELAS 486 (885)
Q Consensus 443 ~~~~~~~~~l~~L~~~~ll~-~~~~~~~~~~mHdlv~~~a~~~~~ 486 (885)
..+.+...+++|.+.+++. +.++...+|+.|++++++.+....
T Consensus 290 -~~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~ 333 (903)
T PRK04841 290 -GEENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQ 333 (903)
T ss_pred -CCCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHHH
Confidence 1345688899999999965 333334689999999999997653
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.39 E-value=1.4e-14 Score=129.84 Aligned_cols=133 Identities=24% Similarity=0.314 Sum_probs=111.1
Q ss_pred cccCCCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCchhhhcccccceeeccCCcccccChhhhcc
Q 045686 530 LVEAPSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPEEIGRLKNLHHLNLSNTSIGCLPTAIKRL 609 (885)
Q Consensus 530 ~~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~Ls~~~i~~lp~~i~~L 609 (885)
++.+..++++..|.+++|.+.. +|+. +..+++|++|++++| .|+++|.+|+.++.|+.|++.-|++..+|.+|+.+
T Consensus 26 ~~gLf~~s~ITrLtLSHNKl~~--vppn-ia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgmnrl~~lprgfgs~ 101 (264)
T KOG0617|consen 26 LPGLFNMSNITRLTLSHNKLTV--VPPN-IAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGMNRLNILPRGFGSF 101 (264)
T ss_pred cccccchhhhhhhhcccCceee--cCCc-HHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecchhhhhcCccccCCC
Confidence 5667778899999999999988 8888 788999999999999 99999999999999999999999999999999999
Q ss_pred ccccEeecCCccccc-ccCCcccccCcccceecccccccccccCcccccccchhhhcCccCCcceeEEE
Q 045686 610 IKLKVLLLDGIQCHL-SIPEGVISSLSSLQVFSCFSTELVELIDPLFNETAILDELNCLEHLNDLSLTL 677 (885)
Q Consensus 610 ~~L~~L~l~~~~~l~-~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~L~l~~ 677 (885)
+-|+.||+.+|+.-+ .+|.. |-.|+.|+-|+++.|.+.- ...+++.|++|+.|.+..
T Consensus 102 p~levldltynnl~e~~lpgn-ff~m~tlralyl~dndfe~----------lp~dvg~lt~lqil~lrd 159 (264)
T KOG0617|consen 102 PALEVLDLTYNNLNENSLPGN-FFYMTTLRALYLGDNDFEI----------LPPDVGKLTNLQILSLRD 159 (264)
T ss_pred chhhhhhccccccccccCCcc-hhHHHHHHHHHhcCCCccc----------CChhhhhhcceeEEeecc
Confidence 999999999886433 46666 7889999999999887532 345666777766665543
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.39 E-value=3.9e-14 Score=143.64 Aligned_cols=277 Identities=17% Similarity=0.168 Sum_probs=150.2
Q ss_pred ceEEEecccCcccccccccCCCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCchh-hhccccccee
Q 045686 514 EAVRLSLWGSSIDFLALVEAPSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPEE-IGRLKNLHHL 592 (885)
Q Consensus 514 ~~~~l~l~~~~i~~~~~~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~-i~~L~~L~~L 592 (885)
....|.+..|.|+.++...|..+++||.|+|++|.+.. |-++.|.+++.|-.|-+.+++.|+.+|.. +++|..|+-|
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~--I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISF--IAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL 145 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhh--cChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence 56667777777777655667777777777777777777 76667777777766666663377777754 5677777777
Q ss_pred eccCCcccccChh-hhccccccEeecCCcccccccCCcccccCcccceecccccccccc--cCccccc-ccchhhhcCcc
Q 045686 593 NLSNTSIGCLPTA-IKRLIKLKVLLLDGIQCHLSIPEGVISSLSSLQVFSCFSTELVEL--IDPLFNE-TAILDELNCLE 668 (885)
Q Consensus 593 ~Ls~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~--~~~~~~~-~~~l~~l~~L~ 668 (885)
.+.-|++..++.. +..|++|..|.+.+|. +..++.+.+..+..++++.+..|.+... ++..... .....+.+..+
T Consensus 146 llNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgar 224 (498)
T KOG4237|consen 146 LLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGAR 224 (498)
T ss_pred hcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccce
Confidence 7777777666655 6777777777777775 6777776677777777777766543210 0000000 00000000000
Q ss_pred CCcceeEEEechh--hHHhhhCCCcccccceeEEecccc-ccccc---hhhhhhccceEEeeccCccceeecCCCCCccc
Q 045686 669 HLNDLSLTLFSTE--AVDKLLNSPKLQRCIRRLTIESSE-LLSLE---LGLMLSHLEILRIKCGFMKRLNIDQGLNNRPS 742 (885)
Q Consensus 669 ~L~~L~l~~~~~~--~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~---l~~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~ 742 (885)
......+...... ....+... ...+.+-..+.|. ....+ +..+ ++|+.|+++.|.++.+...++. .
T Consensus 225 c~~p~rl~~~Ri~q~~a~kf~c~---~esl~s~~~~~d~~d~~cP~~cf~~L-~~L~~lnlsnN~i~~i~~~aFe----~ 296 (498)
T KOG4237|consen 225 CVSPYRLYYKRINQEDARKFLCS---LESLPSRLSSEDFPDSICPAKCFKKL-PNLRKLNLSNNKITRIEDGAFE----G 296 (498)
T ss_pred ecchHHHHHHHhcccchhhhhhh---HHhHHHhhccccCcCCcChHHHHhhc-ccceEeccCCCccchhhhhhhc----c
Confidence 0000000000000 00000000 0011111111121 11111 2222 6777777777777776655554 2
Q ss_pred cccccEEeeccccCCcccc--ccccCCCccEEeEeccCCchhhhcccccCCCcccccccccceecccccc
Q 045686 743 FSALRRLSIILCPDIQNLT--CLVHVPSLQFLSLSNCHSLEEIVGTYASGSSESRNYFSNLMAVDLDGLP 810 (885)
Q Consensus 743 l~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~ 810 (885)
...++.|.|..+ ++..+. .+..+..|+.|+|++| .++.+.. ..+....+|.+|++-.+|
T Consensus 297 ~a~l~eL~L~~N-~l~~v~~~~f~~ls~L~tL~L~~N-~it~~~~-------~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 297 AAELQELYLTRN-KLEFVSSGMFQGLSGLKTLSLYDN-QITTVAP-------GAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred hhhhhhhhcCcc-hHHHHHHHhhhccccceeeeecCC-eeEEEec-------ccccccceeeeeehccCc
Confidence 567777777776 565543 4556777777777776 3444422 345555566666666544
No 23
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.38 E-value=1.6e-13 Score=162.40 Aligned_cols=303 Identities=25% Similarity=0.279 Sum_probs=187.3
Q ss_pred ccceEEEecccCc--ccccccccCCCCchhHHHHHhhc-CCccCCCCchhhhcCCcccEEecCCCCCCCcCchhhhcccc
Q 045686 512 WHEAVRLSLWGSS--IDFLALVEAPSCPQVRTLLARLT-MLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPEEIGRLKN 588 (885)
Q Consensus 512 ~~~~~~l~l~~~~--i~~~~~~~~~~~~~Lr~L~l~~~-~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~ 588 (885)
.++++.|-+..|. +.......+..+|.||+|++++| .+.. +|.. ++.+-+||||+|+++ .+..+|.++++|..
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~--LP~~-I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~ 619 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSK--LPSS-IGELVHLRYLDLSDT-GISHLPSGLGNLKK 619 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCc--CChH-HhhhhhhhcccccCC-CccccchHHHHHHh
Confidence 3468888888875 44422333778999999999988 5566 8887 799999999999999 99999999999999
Q ss_pred cceeeccCCc-ccccChhhhccccccEeecCCcccccccCCcccccCcccceecccccccccccCcccccccchhhhcCc
Q 045686 589 LHHLNLSNTS-IGCLPTAIKRLIKLKVLLLDGIQCHLSIPEGVISSLSSLQVFSCFSTELVELIDPLFNETAILDELNCL 667 (885)
Q Consensus 589 L~~L~Ls~~~-i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L 667 (885)
|.|||+..+. +..+|..+..|++|++|.+.... .......++.+.+|++|....+.... ...+..+..+
T Consensus 620 L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~--~~~~~~~l~el~~Le~L~~ls~~~~s--------~~~~e~l~~~ 689 (889)
T KOG4658|consen 620 LIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA--LSNDKLLLKELENLEHLENLSITISS--------VLLLEDLLGM 689 (889)
T ss_pred hheeccccccccccccchhhhcccccEEEeeccc--cccchhhHHhhhcccchhhheeecch--------hHhHhhhhhh
Confidence 9999999984 55666667779999999997764 11112224555555555554443321 1122333333
Q ss_pred cCCcceeEEEe-chhhHHhhhCCCcccccceeEEeccccccccc--------hhhhhhccceEEe-eccCccceeecCCC
Q 045686 668 EHLNDLSLTLF-STEAVDKLLNSPKLQRCIRRLTIESSELLSLE--------LGLMLSHLEILRI-KCGFMKRLNIDQGL 737 (885)
Q Consensus 668 ~~L~~L~l~~~-~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~--------l~~~~~~L~~L~l-~~~~l~~l~~~~~~ 737 (885)
..|..+..... ................+|+.|.+.+|...... ....++++..+.+ +|..++.+....+
T Consensus 690 ~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f- 768 (889)
T KOG4658|consen 690 TRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLF- 768 (889)
T ss_pred HHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhc-
Confidence 33332211111 01111222222233457899999988843211 1111234444444 6666665443333
Q ss_pred CCccccccccEEeeccccCCccc-cccccCCCccEEeEeccCCchhhhcccccCCCcccccccccceecccccccccccc
Q 045686 738 NNRPSFSALRRLSIILCPDIQNL-TCLVHVPSLQFLSLSNCHSLEEIVGTYASGSSESRNYFSNLMAVDLDGLPTLRSIC 816 (885)
Q Consensus 738 ~~~~~l~~L~~L~L~~c~~l~~l-~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 816 (885)
.++|+.|.+..|+.+.++ |....+..++.+.+..+ .+.... .....+.||++..+.+.+. .++.+.
T Consensus 769 -----~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~-~~~~l~------~~~~l~~l~~i~~~~l~~~-~l~~~~ 835 (889)
T KOG4658|consen 769 -----APHLTSLSLVSCRLLEDIIPKLKALLELKELILPFN-KLEGLR------MLCSLGGLPQLYWLPLSFL-KLEELI 835 (889)
T ss_pred -----cCcccEEEEecccccccCCCHHHHhhhcccEEeccc-ccccce------eeecCCCCceeEecccCcc-chhhee
Confidence 699999999999877774 44455555554333332 222210 0124455565555555552 255444
Q ss_pred CCc----cCCCCccEEeeccC-CCCCCcCCC
Q 045686 817 SGT----VAFPSLQTLSITGC-PSLKKLPFN 842 (885)
Q Consensus 817 ~~~----~~~p~L~~L~i~~C-~~L~~lp~~ 842 (885)
... ..+|.+..+.+.+| +++..+|..
T Consensus 836 ve~~p~l~~~P~~~~~~i~~~~~~~~~~~~~ 866 (889)
T KOG4658|consen 836 VEECPKLGKLPLLSTLTIVGCEEKLKEYPDG 866 (889)
T ss_pred hhcCcccccCccccccceeccccceeecCCc
Confidence 333 56899999999997 999999975
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.36 E-value=8.6e-15 Score=148.38 Aligned_cols=108 Identities=25% Similarity=0.382 Sum_probs=95.6
Q ss_pred hhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcC-chhhhcccccceeeccC-CcccccChh-hhccccccE
Q 045686 538 QVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQL-PEEIGRLKNLHHLNLSN-TSIGCLPTA-IKRLIKLKV 614 (885)
Q Consensus 538 ~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~l-p~~i~~L~~L~~L~Ls~-~~i~~lp~~-i~~L~~L~~ 614 (885)
.-..+.|..|.++. +|+..|+.++.||.||||+| .|+.+ |..|.+|..|-.|-+.+ |+|+.+|++ |++|..|+.
T Consensus 68 ~tveirLdqN~I~~--iP~~aF~~l~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqr 144 (498)
T KOG4237|consen 68 ETVEIRLDQNQISS--IPPGAFKTLHRLRRLDLSKN-NISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQR 144 (498)
T ss_pred cceEEEeccCCccc--CChhhccchhhhceeccccc-chhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHH
Confidence 45567889999999 99999999999999999999 77654 88999999988777776 899999998 899999999
Q ss_pred eecCCcccccccCCcccccCcccceeccccccccc
Q 045686 615 LLLDGIQCHLSIPEGVISSLSSLQVFSCFSTELVE 649 (885)
Q Consensus 615 L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~ 649 (885)
|.+.-|+ +.-++.+.+..|++|..|.++.|.+..
T Consensus 145 LllNan~-i~Cir~~al~dL~~l~lLslyDn~~q~ 178 (498)
T KOG4237|consen 145 LLLNANH-INCIRQDALRDLPSLSLLSLYDNKIQS 178 (498)
T ss_pred HhcChhh-hcchhHHHHHHhhhcchhcccchhhhh
Confidence 9999997 788888889999999999999997754
No 25
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.29 E-value=3.6e-10 Score=118.98 Aligned_cols=184 Identities=15% Similarity=0.216 Sum_probs=114.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHHHcCCCccccCCCChhHHHHHHHH
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILRRFEIPDQMWIGKDEDGRANEILS 250 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 250 (885)
....++.|+|++|+||||+++.+++.... ..+ ...|+ +....+..+++..|+..+|.+.. ..........+..
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l~~--~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~---~~~~~~~~~~l~~ 113 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRLDQ--ERV-VAAKL-VNTRVDAEDLLRMVAADFGLETE---GRDKAALLRELED 113 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhcCC--CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCC---CCCHHHHHHHHHH
Confidence 44568999999999999999999988742 221 12233 23345677888999999987642 2233333333333
Q ss_pred H-----hcCCCeEEEEecCCCcc--ccccccccccccccCCCCCEEEEEcCChhHHhhhc----------ccceeeccCC
Q 045686 251 N-----LRGKKFVLLLDDVWERL--DLSKVGVSDLLDDSSQTGSKIVFTTRSEEVCGEMG----------ARRRFRVECL 313 (885)
Q Consensus 251 ~-----l~~k~~LlVLDdv~~~~--~~~~~~~~~~l~~~~~~gs~IivTTR~~~v~~~~~----------~~~~~~l~~L 313 (885)
. ..+++.++|+||++... .++.+...............|++|.... ....+. ....+.++++
T Consensus 114 ~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l 192 (269)
T TIGR03015 114 FLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPL 192 (269)
T ss_pred HHHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCC
Confidence 2 25788999999998753 2222221111100122233455655432 221111 1345789999
Q ss_pred ChHHHHHHHHHHhcCcccCCc-cchHHHHHHHHHHhCCchhHHHHHHHHH
Q 045686 314 SPEAALDLFRYKVGEDVYSSH-FEISNLAQTVVEECRGLPLALVTIGHAM 362 (885)
Q Consensus 314 ~~~~~~~Lf~~~~~~~~~~~~-~~~~~~~~~I~~~c~GlPLai~~~~~~l 362 (885)
+.+|..+++...+........ .-..+..+.|++.++|.|..|..++..+
T Consensus 193 ~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 193 DREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred CHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 999999999887643221111 1124678999999999999999988776
No 26
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.27 E-value=5.6e-10 Score=124.44 Aligned_cols=295 Identities=14% Similarity=0.088 Sum_probs=171.1
Q ss_pred CCccchhHHHHHHHHHhhc----CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHH
Q 045686 152 GKTVGLDSIISEVWRCIED----HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILR 227 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~----~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~ 227 (885)
+.++||++++++|...+.+ .....+.|+|++|+|||++++.+++..... ...-..+++++....+...++..++.
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~-~~~~~~v~in~~~~~~~~~~~~~i~~ 108 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEI-AVKVVYVYINCQIDRTRYAIFSEIAR 108 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHh-cCCcEEEEEECCcCCCHHHHHHHHHH
Confidence 5689999999999998833 345678899999999999999999987432 21234667777777778889999999
Q ss_pred HcCCCccccCCCChhHHHHHHHHHhc--CCCeEEEEecCCCcc---ccccccccccccccCCCCC--EEEEEcCChhHHh
Q 045686 228 RFEIPDQMWIGKDEDGRANEILSNLR--GKKFVLLLDDVWERL---DLSKVGVSDLLDDSSQTGS--KIVFTTRSEEVCG 300 (885)
Q Consensus 228 ~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVLDdv~~~~---~~~~~~~~~~l~~~~~~gs--~IivTTR~~~v~~ 300 (885)
+++.......+.+.++....+.+.+. +++.+||+|+++... ....+...+... ....++ .+|.++....+..
T Consensus 109 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~-~~~~~~~v~vI~i~~~~~~~~ 187 (394)
T PRK00411 109 QLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAH-EEYPGARIGVIGISSDLTFLY 187 (394)
T ss_pred HhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhh-hccCCCeEEEEEEECCcchhh
Confidence 98652211123345666777777765 456899999997643 111111100000 111233 3666666554432
Q ss_pred hhc-------ccceeeccCCChHHHHHHHHHHhcC---cccCCccchHHHHHHHHHHhCCchhHHHHHHHHH--hc--C-
Q 045686 301 EMG-------ARRRFRVECLSPEAALDLFRYKVGE---DVYSSHFEISNLAQTVVEECRGLPLALVTIGHAM--AS--R- 365 (885)
Q Consensus 301 ~~~-------~~~~~~l~~L~~~~~~~Lf~~~~~~---~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~l--~~--~- 365 (885)
... ....+.+.+++.++..+++...+.. ...-.+..++.+++......|..+.|+.++-.+. +. .
T Consensus 188 ~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~ 267 (394)
T PRK00411 188 ILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGS 267 (394)
T ss_pred hcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCC
Confidence 221 1246789999999999999987632 1111222233334434333566777777654322 11 1
Q ss_pred --CChhhHHHHHHHHhcCcccccCCCCcccccccccccccccchhhhHHhhh-c-cCC-CCceecHHHHHHH--HHhcCc
Q 045686 366 --MGPTQWRYAVGELQRYPFKFAGMGNSVFPILRFSYDSLREDIFKTCFLYC-A-LFP-EEHNITKDELIQL--WIGEGF 438 (885)
Q Consensus 366 --~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~-s-~fp-~~~~i~~~~li~~--w~a~g~ 438 (885)
-+......+.+.+.. ....-.+..||.+ +..|++. + ... +...+....+... .+++.+
T Consensus 268 ~~I~~~~v~~a~~~~~~-------------~~~~~~~~~L~~~--~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~ 332 (394)
T PRK00411 268 RKVTEEDVRKAYEKSEI-------------VHLSEVLRTLPLH--EKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEEL 332 (394)
T ss_pred CCcCHHHHHHHHHHHHH-------------HHHHHHHhcCCHH--HHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHc
Confidence 244555555554321 1233457788885 4444443 2 121 1133555555432 222221
Q ss_pred CCCCCCCChHHHHHHHHHHhccccc
Q 045686 439 LNGISPRDQGEYIIESLKLACLLER 463 (885)
Q Consensus 439 ~~~~~~~~~~~~~l~~L~~~~ll~~ 463 (885)
-..+-......+++..|...++++.
T Consensus 333 ~~~~~~~~~~~~~l~~L~~~glI~~ 357 (394)
T PRK00411 333 GYEPRTHTRFYEYINKLDMLGIINT 357 (394)
T ss_pred CCCcCcHHHHHHHHHHHHhcCCeEE
Confidence 1111123456778899999999875
No 27
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.22 E-value=2.5e-10 Score=128.11 Aligned_cols=304 Identities=16% Similarity=0.206 Sum_probs=190.6
Q ss_pred ccccCCCCccchhHHHHHHHHHhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcC-cccHHHHHHH
Q 045686 146 VEERPIGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSR-DANLEKIQES 224 (885)
Q Consensus 146 ~~~~~~~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~ 224 (885)
+.|.++...|-|..-.+.+.+. ...+.+.|..|+|.|||||+.+++... ..-..+.|.+..+ +.++......
T Consensus 13 ~~P~~~~~~v~R~rL~~~L~~~---~~~RL~li~APAGfGKttl~aq~~~~~----~~~~~v~Wlslde~dndp~rF~~y 85 (894)
T COG2909 13 VRPVRPDNYVVRPRLLDRLRRA---NDYRLILISAPAGFGKTTLLAQWRELA----ADGAAVAWLSLDESDNDPARFLSY 85 (894)
T ss_pred CCCCCcccccccHHHHHHHhcC---CCceEEEEeCCCCCcHHHHHHHHHHhc----CcccceeEeecCCccCCHHHHHHH
Confidence 3344455667776655554332 478999999999999999999998733 2334599999876 4578888888
Q ss_pred HHHHcCCCcccc-----------CCCChhHHHHHHHHHhc--CCCeEEEEecCCCccccccc-cccccccccCCCCCEEE
Q 045686 225 ILRRFEIPDQMW-----------IGKDEDGRANEILSNLR--GKKFVLLLDDVWERLDLSKV-GVSDLLDDSSQTGSKIV 290 (885)
Q Consensus 225 i~~~l~~~~~~~-----------~~~~~~~~~~~l~~~l~--~k~~LlVLDdv~~~~~~~~~-~~~~~l~~~~~~gs~Ii 290 (885)
++.+++...+.. ...+...+...+..-+. .++..+||||..-..+..-- ...+.+ .....+-+.|
T Consensus 86 Li~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl-~~~P~~l~lv 164 (894)
T COG2909 86 LIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLL-KHAPENLTLV 164 (894)
T ss_pred HHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHH-HhCCCCeEEE
Confidence 888887433211 11223334444444443 46899999998654332111 111111 1445678999
Q ss_pred EEcCChhHH---hhhcccceeecc----CCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCchhHHHHHHHHHh
Q 045686 291 FTTRSEEVC---GEMGARRRFRVE----CLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPLALVTIGHAMA 363 (885)
Q Consensus 291 vTTR~~~v~---~~~~~~~~~~l~----~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~l~ 363 (885)
||||+..-. ..--.+..++++ .++.+|+-++|....+..-. +.-...+.+..+|.+-|+..++=.++
T Consensus 165 v~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~Ld------~~~~~~L~~~teGW~~al~L~aLa~~ 238 (894)
T COG2909 165 VTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPLD------AADLKALYDRTEGWAAALQLIALALR 238 (894)
T ss_pred EEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCCC------hHHHHHHHhhcccHHHHHHHHHHHcc
Confidence 999987422 211112233333 38899999999887754321 22378899999999999998887777
Q ss_pred cCCChhhHHHHHHHHhcCcccccCCCCcccc-cccccccccccchhhhHHhhhccCCCCceecHHHHHHHHHhcCcCCCC
Q 045686 364 SRMGPTQWRYAVGELQRYPFKFAGMGNSVFP-ILRFSYDSLREDIFKTCFLYCALFPEEHNITKDELIQLWIGEGFLNGI 442 (885)
Q Consensus 364 ~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~-~l~~sy~~L~~~~~k~cfl~~s~fp~~~~i~~~~li~~w~a~g~~~~~ 442 (885)
.+.+.+.-...+ .+..+.+.. ...=-++.||++ +|..++.||+++.=. ++|+. ..
T Consensus 239 ~~~~~~q~~~~L----------sG~~~~l~dYL~eeVld~Lp~~-l~~FLl~~svl~~f~----~eL~~---------~L 294 (894)
T COG2909 239 NNTSAEQSLRGL----------SGAASHLSDYLVEEVLDRLPPE-LRDFLLQTSVLSRFN----DELCN---------AL 294 (894)
T ss_pred CCCcHHHHhhhc----------cchHHHHHHHHHHHHHhcCCHH-HHHHHHHHHhHHHhh----HHHHH---------HH
Confidence 332222111110 000000100 111236789997 999999999986421 22322 22
Q ss_pred CCCChHHHHHHHHHHhcccc-cCCCCCCcEEEehhHHHHHHHHhhc
Q 045686 443 SPRDQGEYIIESLKLACLLE-RGENSEDSVKMHNLIRDMALELASE 487 (885)
Q Consensus 443 ~~~~~~~~~l~~L~~~~ll~-~~~~~~~~~~mHdlv~~~a~~~~~~ 487 (885)
..++.+...+++|.+++|+- +-++....|+.|.++.||-+.....
T Consensus 295 tg~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 295 TGEENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred hcCCcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhcc
Confidence 34677889999999999874 4445578999999999999876654
No 28
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.19 E-value=3.2e-09 Score=117.12 Aligned_cols=298 Identities=13% Similarity=0.146 Sum_probs=168.8
Q ss_pred CCccchhHHHHHHHHHhhc----CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCc---cEEEEEEEcCcccHHHHHHH
Q 045686 152 GKTVGLDSIISEVWRCIED----HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDF---DLVIWVKVSRDANLEKIQES 224 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~----~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f---~~~~wv~v~~~~~~~~~~~~ 224 (885)
+.++||++++++|..++.. .....+.|+|++|+|||++++.+++......... -..+|+++....+...++..
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~ 94 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVE 94 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHH
Confidence 5689999999999999853 4456889999999999999999998763211111 23567777777777888999
Q ss_pred HHHHc---CCCccccCCCChhHHHHHHHHHhc--CCCeEEEEecCCCcc-cccccccc-ccc---cccCCCCCEEEEEcC
Q 045686 225 ILRRF---EIPDQMWIGKDEDGRANEILSNLR--GKKFVLLLDDVWERL-DLSKVGVS-DLL---DDSSQTGSKIVFTTR 294 (885)
Q Consensus 225 i~~~l---~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVLDdv~~~~-~~~~~~~~-~~l---~~~~~~gs~IivTTR 294 (885)
|+.++ +...+. .+.+..+....+.+.+. +++++||||+++... ....+... +.+ .........+|++|.
T Consensus 95 i~~~l~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n 173 (365)
T TIGR02928 95 LANQLRGSGEEVPT-TGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISN 173 (365)
T ss_pred HHHHHhhcCCCCCC-CCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEEC
Confidence 99988 333211 22334555566666653 567899999998652 11111100 000 001112334555555
Q ss_pred ChhHHhhhc-------ccceeeccCCChHHHHHHHHHHhcC--cccCCccchHHHHHHHHHHhCCchhHHH-HHHHHH--
Q 045686 295 SEEVCGEMG-------ARRRFRVECLSPEAALDLFRYKVGE--DVYSSHFEISNLAQTVVEECRGLPLALV-TIGHAM-- 362 (885)
Q Consensus 295 ~~~v~~~~~-------~~~~~~l~~L~~~~~~~Lf~~~~~~--~~~~~~~~~~~~~~~I~~~c~GlPLai~-~~~~~l-- 362 (885)
.......+. ....+.+.+++.++..+++..++.. .....+++..+....++....|.|..+. ++-...
T Consensus 174 ~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~ 253 (365)
T TIGR02928 174 DLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEI 253 (365)
T ss_pred CcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 443321111 1246889999999999999988741 1111223333445566777778885443 322211
Q ss_pred h--c---CCChhhHHHHHHHHhcCcccccCCCCcccccccccccccccchhhhHHhhhccC--CCCceecHHHHHHHH--
Q 045686 363 A--S---RMGPTQWRYAVGELQRYPFKFAGMGNSVFPILRFSYDSLREDIFKTCFLYCALF--PEEHNITKDELIQLW-- 433 (885)
Q Consensus 363 ~--~---~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~s~f--p~~~~i~~~~li~~w-- 433 (885)
. . .-+.+..+.+.+.+.. ....-++..||.+ .+..+..++.. .++..+....+...+
T Consensus 254 a~~~~~~~it~~~v~~a~~~~~~-------------~~~~~~i~~l~~~-~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~ 319 (365)
T TIGR02928 254 AEREGAERVTEDHVEKAQEKIEK-------------DRLLELIRGLPTH-SKLVLLAIANLAANDEDPFRTGEVYEVYKE 319 (365)
T ss_pred HHHcCCCCCCHHHHHHHHHHHHH-------------HHHHHHHHcCCHH-HHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Confidence 1 1 1234444444443321 1223355677775 44333333311 133445666665533
Q ss_pred HhcCcCCCCCCCChHHHHHHHHHHhcccccC
Q 045686 434 IGEGFLNGISPRDQGEYIIESLKLACLLERG 464 (885)
Q Consensus 434 ~a~g~~~~~~~~~~~~~~l~~L~~~~ll~~~ 464 (885)
+++.+-..+-......+++..|...|+++..
T Consensus 320 ~~~~~~~~~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 320 VCEDIGVDPLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred HHHhcCCCCCcHHHHHHHHHHHHhcCCeEEE
Confidence 2221111112345677889999999999754
No 29
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.19 E-value=2.9e-12 Score=138.90 Aligned_cols=88 Identities=24% Similarity=0.158 Sum_probs=43.3
Q ss_pred hhcCCcccEEecCCCCCCC-----cCchhhhcccccceeeccCCcccc-------cChhhhccccccEeecCCccccccc
Q 045686 559 FDSMDALEVLDLSYNLDLN-----QLPEEIGRLKNLHHLNLSNTSIGC-------LPTAIKRLIKLKVLLLDGIQCHLSI 626 (885)
Q Consensus 559 ~~~l~~L~~L~Ls~~~~i~-----~lp~~i~~L~~L~~L~Ls~~~i~~-------lp~~i~~L~~L~~L~l~~~~~l~~l 626 (885)
|..+..|++|++++| .++ .++..+...++|++|+++++.+.. ++..+..+++|++|++++|......
T Consensus 19 ~~~l~~L~~l~l~~~-~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 97 (319)
T cd00116 19 LPKLLCLQVLRLEGN-TLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDG 97 (319)
T ss_pred HHHHhhccEEeecCC-CCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhH
Confidence 445555666666666 331 234444455556666666554432 2233445556666666665422222
Q ss_pred CCcccccCcc---cceecccccccc
Q 045686 627 PEGVISSLSS---LQVFSCFSTELV 648 (885)
Q Consensus 627 p~~~i~~L~~---L~~L~l~~~~~~ 648 (885)
+.. +..+.+ |++|++++|.+.
T Consensus 98 ~~~-~~~l~~~~~L~~L~ls~~~~~ 121 (319)
T cd00116 98 CGV-LESLLRSSSLQELKLNNNGLG 121 (319)
T ss_pred HHH-HHHHhccCcccEEEeeCCccc
Confidence 222 333333 666666655543
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.14 E-value=5.4e-12 Score=134.09 Aligned_cols=126 Identities=29% Similarity=0.332 Sum_probs=93.7
Q ss_pred eEEEecccCcccccccccCCCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCchhhhcccccceeec
Q 045686 515 AVRLSLWGSSIDFLALVEAPSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPEEIGRLKNLHHLNL 594 (885)
Q Consensus 515 ~~~l~l~~~~i~~~~~~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~L 594 (885)
....+++.|.+.+. ......|-.|..|.+..|.+.. +|.. ++.+..|.+|||+.| .+..+|..++.|+ |+.|-+
T Consensus 77 t~~aDlsrNR~~el-p~~~~~f~~Le~liLy~n~~r~--ip~~-i~~L~~lt~l~ls~N-qlS~lp~~lC~lp-Lkvli~ 150 (722)
T KOG0532|consen 77 TVFADLSRNRFSEL-PEEACAFVSLESLILYHNCIRT--IPEA-ICNLEALTFLDLSSN-QLSHLPDGLCDLP-LKVLIV 150 (722)
T ss_pred hhhhhccccccccC-chHHHHHHHHHHHHHHhcccee--cchh-hhhhhHHHHhhhccc-hhhcCChhhhcCc-ceeEEE
Confidence 34556666666552 1233556778888888887777 7766 677888888888888 7788888887775 788888
Q ss_pred cCCcccccChhhhccccccEeecCCcccccccCCcccccCcccceecccccccc
Q 045686 595 SNTSIGCLPTAIKRLIKLKVLLLDGIQCHLSIPEGVISSLSSLQVFSCFSTELV 648 (885)
Q Consensus 595 s~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 648 (885)
++|+++.+|..++.+..|.+|+.+.|. +.++|.. ++.|.+|+.|++..|++.
T Consensus 151 sNNkl~~lp~~ig~~~tl~~ld~s~ne-i~slpsq-l~~l~slr~l~vrRn~l~ 202 (722)
T KOG0532|consen 151 SNNKLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQ-LGYLTSLRDLNVRRNHLE 202 (722)
T ss_pred ecCccccCCcccccchhHHHhhhhhhh-hhhchHH-hhhHHHHHHHHHhhhhhh
Confidence 888888888888877888888888886 7777777 788888888888777654
No 31
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.12 E-value=3.9e-10 Score=116.08 Aligned_cols=198 Identities=20% Similarity=0.245 Sum_probs=103.3
Q ss_pred ccchhHHHHHHHHHhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHH---------HH
Q 045686 154 TVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQ---------ES 224 (885)
Q Consensus 154 ~vgr~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~---------~~ 224 (885)
|+||++++++|.+++..+....+.|+|+.|+|||+|++.+.+... ...+ .++|+...+........ ..
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~--~~~~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 77 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELK--EKGY-KVVYIDFLEESNESSLRSFIEETSLADE 77 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT----EE-CCCHHCCTTBSHHHHHHHHHHHHHHHCH
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhh--hcCC-cEEEEecccchhhhHHHHHHHHHHHHHH
Confidence 789999999999999887789999999999999999999999873 1222 34444443332221111 11
Q ss_pred HHHHcCCCcccc--------CCCChhHHHHHHHHHhc--CCCeEEEEecCCCcc-ccc---cc----cccccccccCCCC
Q 045686 225 ILRRFEIPDQMW--------IGKDEDGRANEILSNLR--GKKFVLLLDDVWERL-DLS---KV----GVSDLLDDSSQTG 286 (885)
Q Consensus 225 i~~~l~~~~~~~--------~~~~~~~~~~~l~~~l~--~k~~LlVLDdv~~~~-~~~---~~----~~~~~l~~~~~~g 286 (885)
+...++...+.. ...........+.+.+. +++.+||+||+.... ... .+ ...+.. ......
T Consensus 78 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~ 156 (234)
T PF01637_consen 78 LSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDS-LLSQQN 156 (234)
T ss_dssp CHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-----TT
T ss_pred HHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhh-ccccCC
Confidence 111121100000 01112233333434443 345999999997655 111 11 111110 012334
Q ss_pred CEEEEEcCChhHHhh--------hcccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCchhHHHH
Q 045686 287 SKIVFTTRSEEVCGE--------MGARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPLALVT 357 (885)
Q Consensus 287 s~IivTTR~~~v~~~--------~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~ 357 (885)
..+|+++....+... ......+.+++|+.+++++++...+... ..- +.-.+..++|+..+||.|..|..
T Consensus 157 ~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~-~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 157 VSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKL-PFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC--------HHHHHHHHHHHTT-HHHHHH
T ss_pred ceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcc-cCCHHHHHHHHHHhCCCHHHHhc
Confidence 455555555544432 1223458999999999999999976543 211 11234469999999999998764
No 32
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.11 E-value=9.9e-10 Score=118.39 Aligned_cols=275 Identities=15% Similarity=0.100 Sum_probs=154.7
Q ss_pred CCccchhHHHHHHHHHhhc-----CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHH
Q 045686 152 GKTVGLDSIISEVWRCIED-----HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESIL 226 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~-----~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~ 226 (885)
.+|+|+++.++.+..++.. .....+.|+|++|+||||+|+.+++... ..+. ++... .......+..++
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~---~~~~---~~~~~-~~~~~~~l~~~l 97 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMG---VNIR---ITSGP-ALEKPGDLAAIL 97 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhC---CCeE---EEecc-cccChHHHHHHH
Confidence 5699999999999887742 3456788999999999999999999873 2221 12211 111122233444
Q ss_pred HHcCCCcccc-C--CCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccccccccCCCCCEEEEEcCChhHHhhhc
Q 045686 227 RRFEIPDQMW-I--GKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSDLLDDSSQTGSKIVFTTRSEEVCGEMG 303 (885)
Q Consensus 227 ~~l~~~~~~~-~--~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~~l~~~~~~gs~IivTTR~~~v~~~~~ 303 (885)
..++...--+ + ..-.....+.+...+.+.+..+|+|+..+..... ... .+.+-|..||+...+...+.
T Consensus 98 ~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~---~~l------~~~~li~at~~~~~l~~~L~ 168 (328)
T PRK00080 98 TNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIR---LDL------PPFTLIGATTRAGLLTSPLR 168 (328)
T ss_pred HhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCcccccee---ecC------CCceEEeecCCcccCCHHHH
Confidence 4433211000 0 0001122333455556666666776654332211 011 12344556777544432221
Q ss_pred --ccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCchhHHHHHHHHHhcCCChhhHHHHHHHHhcC
Q 045686 304 --ARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPLALVTIGHAMASRMGPTQWRYAVGELQRY 381 (885)
Q Consensus 304 --~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~l~~~~~~~~w~~~~~~l~~~ 381 (885)
....+.++++++++..+++.+.+.......++ +.+..|++.|+|.|-.+..+...+. .|.... ...
T Consensus 169 sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~---~~~~~ia~~~~G~pR~a~~~l~~~~------~~a~~~---~~~ 236 (328)
T PRK00080 169 DRFGIVQRLEFYTVEELEKIVKRSARILGVEIDE---EGALEIARRSRGTPRIANRLLRRVR------DFAQVK---GDG 236 (328)
T ss_pred HhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCH---HHHHHHHHHcCCCchHHHHHHHHHH------HHHHHc---CCC
Confidence 23468999999999999999988755443333 4589999999999976555444332 111110 000
Q ss_pred cccccCCCCcccccccccccccccchhhhHHh-hhccCCCCceecHHHHHHHHHhcCcCCCCCCCChHHHHHH-HHHHhc
Q 045686 382 PFKFAGMGNSVFPILRFSYDSLREDIFKTCFL-YCALFPEEHNITKDELIQLWIGEGFLNGISPRDQGEYIIE-SLKLAC 459 (885)
Q Consensus 382 ~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl-~~s~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~l~-~L~~~~ 459 (885)
.-... .-......+...|..|++. .+..+. ....|+.+ .+..+.+.... | ...+.+++.++ .|++.+
T Consensus 237 ~I~~~-~v~~~l~~~~~~~~~l~~~-~~~~l~~~~~~~~~~-~~~~~~~a~~l---g-----~~~~~~~~~~e~~Li~~~ 305 (328)
T PRK00080 237 VITKE-IADKALDMLGVDELGLDEM-DRKYLRTIIEKFGGG-PVGLDTLAAAL---G-----EERDTIEDVYEPYLIQQG 305 (328)
T ss_pred CCCHH-HHHHHHHHhCCCcCCCCHH-HHHHHHHHHHHcCCC-ceeHHHHHHHH---C-----CCcchHHHHhhHHHHHcC
Confidence 00000 0012233456667788775 566664 56667665 46666554332 1 23456777777 899999
Q ss_pred ccccCC
Q 045686 460 LLERGE 465 (885)
Q Consensus 460 ll~~~~ 465 (885)
|++...
T Consensus 306 li~~~~ 311 (328)
T PRK00080 306 FIQRTP 311 (328)
T ss_pred CcccCC
Confidence 998654
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.09 E-value=1e-10 Score=111.13 Aligned_cols=134 Identities=28% Similarity=0.331 Sum_probs=52.1
Q ss_pred cccCCCCchhHHHHHhhcCCccCCCCchhhh-cCCcccEEecCCCCCCCcCchhhhcccccceeeccCCcccccChhhh-
Q 045686 530 LVEAPSCPQVRTLLARLTMLHTLPIPSRFFD-SMDALEVLDLSYNLDLNQLPEEIGRLKNLHHLNLSNTSIGCLPTAIK- 607 (885)
Q Consensus 530 ~~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~~-~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~Ls~~~i~~lp~~i~- 607 (885)
.+...++.+++.|+|.+|.+.. +.. ++ .+.+|++|+|++| .|+.++. +..|++|++|++++|.|+.++..+.
T Consensus 12 ~~~~~n~~~~~~L~L~~n~I~~--Ie~--L~~~l~~L~~L~Ls~N-~I~~l~~-l~~L~~L~~L~L~~N~I~~i~~~l~~ 85 (175)
T PF14580_consen 12 IAQYNNPVKLRELNLRGNQIST--IEN--LGATLDKLEVLDLSNN-QITKLEG-LPGLPRLKTLDLSNNRISSISEGLDK 85 (175)
T ss_dssp --------------------------S----TT-TT--EEE-TTS---S--TT-----TT--EEE--SS---S-CHHHHH
T ss_pred cccccccccccccccccccccc--ccc--hhhhhcCCCEEECCCC-CCccccC-ccChhhhhhcccCCCCCCccccchHH
Confidence 4555667788999999998877 643 44 5789999999999 8888864 7889999999999999999977664
Q ss_pred ccccccEeecCCcccccccCC-cccccCcccceecccccccccccCcccccccchhhhcCccCCcceeEE
Q 045686 608 RLIKLKVLLLDGIQCHLSIPE-GVISSLSSLQVFSCFSTELVELIDPLFNETAILDELNCLEHLNDLSLT 676 (885)
Q Consensus 608 ~L~~L~~L~l~~~~~l~~lp~-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~L~l~ 676 (885)
.+++|++|++++|. +..+.. ..++.+++|++|++.+|.+... ......-+..+++|+.|+-.
T Consensus 86 ~lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~~~------~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 86 NLPNLQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVCEK------KNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp H-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGS------TTHHHHHHHH-TT-SEETTE
T ss_pred hCCcCCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCcccch------hhHHHHHHHHcChhheeCCE
Confidence 68999999999996 555432 2267889999999999987642 22233345556677666544
No 34
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.08 E-value=2.2e-09 Score=115.12 Aligned_cols=267 Identities=15% Similarity=0.118 Sum_probs=152.3
Q ss_pred CCccchhHHHHHHHHHhhc-----CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHH
Q 045686 152 GKTVGLDSIISEVWRCIED-----HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESIL 226 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~-----~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~ 226 (885)
.+|||+++.++.|..++.. .....+.++|++|+|||+||+.+++... ..+. .+..+...... .+...+
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~---~~~~---~~~~~~~~~~~-~l~~~l 76 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMG---VNLK---ITSGPALEKPG-DLAAIL 76 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhC---CCEE---EeccchhcCch-hHHHHH
Confidence 4689999999999998852 3456688999999999999999998773 2221 12211111111 222333
Q ss_pred HHcCCCcccc-C--CCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccccccccCCCCCEEEEEcCChhHHhhhc
Q 045686 227 RRFEIPDQMW-I--GKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSDLLDDSSQTGSKIVFTTRSEEVCGEMG 303 (885)
Q Consensus 227 ~~l~~~~~~~-~--~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~~l~~~~~~gs~IivTTR~~~v~~~~~ 303 (885)
..++...--+ + ..-.......+...+.+.+..+|+|+..+...+.. . ..+.+-|..||+...+...+.
T Consensus 77 ~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~---~------~~~~~li~~t~~~~~l~~~l~ 147 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRL---D------LPPFTLVGATTRAGMLTSPLR 147 (305)
T ss_pred HhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceee---c------CCCeEEEEecCCccccCHHHH
Confidence 3333211000 0 00012233445666666677777776654332211 1 112445566777654433221
Q ss_pred --ccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCchhHHHHHHHHHhc------C--CChhhHHH
Q 045686 304 --ARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPLALVTIGHAMAS------R--MGPTQWRY 373 (885)
Q Consensus 304 --~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~l~~------~--~~~~~w~~ 373 (885)
....+.+++++.++..+++.+.++......+ .+....|++.|+|.|-.+..++..+.. . .+.+....
T Consensus 148 sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~---~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~~~~~~it~~~v~~ 224 (305)
T TIGR00635 148 DRFGIILRLEFYTVEELAEIVSRSAGLLNVEIE---PEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQKIINRDIALK 224 (305)
T ss_pred hhcceEEEeCCCCHHHHHHHHHHHHHHhCCCcC---HHHHHHHHHHhCCCcchHHHHHHHHHHHHHHcCCCCcCHHHHHH
Confidence 2346789999999999999998864433332 345788999999999776655543311 0 01111111
Q ss_pred HHHHHhcCcccccCCCCcccccccccccccccchhhhHHh-hhccCCCCceecHHHHHHHHHhcCcCCCCCCCChHHHHH
Q 045686 374 AVGELQRYPFKFAGMGNSVFPILRFSYDSLREDIFKTCFL-YCALFPEEHNITKDELIQLWIGEGFLNGISPRDQGEYII 452 (885)
Q Consensus 374 ~~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl-~~s~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~l 452 (885)
....+...|..+++. .+..+. ..+.++.+ .+..+.+.... | .....++..+
T Consensus 225 ------------------~l~~l~~~~~~l~~~-~~~~L~al~~~~~~~-~~~~~~ia~~l---g-----~~~~~~~~~~ 276 (305)
T TIGR00635 225 ------------------ALEMLMIDELGLDEI-DRKLLSVLIEQFQGG-PVGLKTLAAAL---G-----EDADTIEDVY 276 (305)
T ss_pred ------------------HHHHhCCCCCCCCHH-HHHHHHHHHHHhCCC-cccHHHHHHHh---C-----CCcchHHHhh
Confidence 112245667788875 555555 44666543 45544444322 2 1345677778
Q ss_pred H-HHHHhcccccCC
Q 045686 453 E-SLKLACLLERGE 465 (885)
Q Consensus 453 ~-~L~~~~ll~~~~ 465 (885)
+ .|++++|++...
T Consensus 277 e~~Li~~~li~~~~ 290 (305)
T TIGR00635 277 EPYLLQIGFLQRTP 290 (305)
T ss_pred hHHHHHcCCcccCC
Confidence 8 699999997543
No 35
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.06 E-value=2.7e-11 Score=131.36 Aligned_cols=111 Identities=21% Similarity=0.090 Sum_probs=59.3
Q ss_pred cceeEEeccccccccc---hh---hhhhccceEEeeccCccceeecCCCC-CccccccccEEeeccccCCcc-----c-c
Q 045686 695 CIRRLTIESSELLSLE---LG---LMLSHLEILRIKCGFMKRLNIDQGLN-NRPSFSALRRLSIILCPDIQN-----L-T 761 (885)
Q Consensus 695 ~L~~L~l~~~~~~~~~---l~---~~~~~L~~L~l~~~~l~~l~~~~~~~-~~~~l~~L~~L~L~~c~~l~~-----l-~ 761 (885)
+|+.|++++|.+.... +. ..+++|+.|+++.+.+.......... .....+.|++|++++| .+++ + .
T Consensus 194 ~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n-~i~~~~~~~l~~ 272 (319)
T cd00116 194 NLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCN-DITDDGAKDLAE 272 (319)
T ss_pred CCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCC-CCCcHHHHHHHH
Confidence 5566666655532221 11 11266777777666555321111100 0001378999999998 5542 1 2
Q ss_pred ccccCCCccEEeEeccCCchhhhcccccCCCcccccc-cccceecccccc
Q 045686 762 CLVHVPSLQFLSLSNCHSLEEIVGTYASGSSESRNYF-SNLMAVDLDGLP 810 (885)
Q Consensus 762 ~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~-~~L~~L~l~~~~ 810 (885)
.+..+++|++|++++|..-.. .. .........+ +.|++|++.+.+
T Consensus 273 ~~~~~~~L~~l~l~~N~l~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 273 VLAEKESLLELDLRGNKFGEE-GA---QLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHhcCCCccEEECCCCCCcHH-HH---HHHHHHHhhcCCchhhcccCCCC
Confidence 345668999999999864322 10 0001133445 788888887654
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.94 E-value=3.2e-10 Score=107.70 Aligned_cols=129 Identities=26% Similarity=0.325 Sum_probs=56.9
Q ss_pred cCCccceEEEecccCcccccccccCC-CCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCchhh-hcc
Q 045686 509 FDGWHEAVRLSLWGSSIDFLALVEAP-SCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPEEI-GRL 586 (885)
Q Consensus 509 ~~~~~~~~~l~l~~~~i~~~~~~~~~-~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i-~~L 586 (885)
.....+.+.|++.+|.++. +..+. .+.+|++|++++|.++. ++. +..++.|++|++++| .|+.++..+ ..+
T Consensus 15 ~~n~~~~~~L~L~~n~I~~--Ie~L~~~l~~L~~L~Ls~N~I~~--l~~--l~~L~~L~~L~L~~N-~I~~i~~~l~~~l 87 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIST--IENLGATLDKLEVLDLSNNQITK--LEG--LPGLPRLKTLDLSNN-RISSISEGLDKNL 87 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S----TT------TT--EEE--SS----S-CHHHHHH-
T ss_pred ccccccccccccccccccc--ccchhhhhcCCCEEECCCCCCcc--ccC--ccChhhhhhcccCCC-CCCccccchHHhC
Confidence 3334468999999999987 55555 57899999999999988 765 888999999999999 899887666 469
Q ss_pred cccceeeccCCcccccCh--hhhccccccEeecCCcccccccCC---cccccCcccceeccccc
Q 045686 587 KNLHHLNLSNTSIGCLPT--AIKRLIKLKVLLLDGIQCHLSIPE---GVISSLSSLQVFSCFST 645 (885)
Q Consensus 587 ~~L~~L~Ls~~~i~~lp~--~i~~L~~L~~L~l~~~~~l~~lp~---~~i~~L~~L~~L~l~~~ 645 (885)
++|++|++++|+|..+.. .+..+++|++|++.+|+ +...+. .++..+++|+.||-...
T Consensus 88 p~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 88 PNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred CcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCEEc
Confidence 999999999999866543 47789999999999998 444443 35788999999987654
No 37
>PF05729 NACHT: NACHT domain
Probab=98.94 E-value=6.4e-09 Score=100.61 Aligned_cols=143 Identities=18% Similarity=0.280 Sum_probs=89.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccCCCC----ccEEEEEEEcCcccHH---HHHHHHHHHcCCCccccCCCChhHHHH
Q 045686 174 KVIGLYGMGGVGKTTLLKKLNNKFRDTGHD----FDLVIWVKVSRDANLE---KIQESILRRFEIPDQMWIGKDEDGRAN 246 (885)
Q Consensus 174 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~----f~~~~wv~v~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~~ 246 (885)
+++.|+|.+|+||||+++.++...... .. +...+|+......... .+...|........ .....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-----~~~~~--- 71 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEE-EPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI-----APIEE--- 71 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhc-CcccccceEEEEEeehhhhhccccchHHHHHHHhhccch-----hhhHH---
Confidence 578999999999999999999887532 22 4567777766543322 33333333332211 11111
Q ss_pred HHHH-HhcCCCeEEEEecCCCcccccc---------ccccccccccCCCCCEEEEEcCChhH---HhhhcccceeeccCC
Q 045686 247 EILS-NLRGKKFVLLLDDVWERLDLSK---------VGVSDLLDDSSQTGSKIVFTTRSEEV---CGEMGARRRFRVECL 313 (885)
Q Consensus 247 ~l~~-~l~~k~~LlVLDdv~~~~~~~~---------~~~~~~l~~~~~~gs~IivTTR~~~v---~~~~~~~~~~~l~~L 313 (885)
.+.. .-+.+++++|+|++++...-.. +... .++....++++++||||.... .........+.+.+|
T Consensus 72 ~~~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~-l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~ 150 (166)
T PF05729_consen 72 LLQELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQ-LLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPF 150 (166)
T ss_pred HHHHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHH-HhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCC
Confidence 1222 2256899999999976533111 1111 111123468999999998766 333444568999999
Q ss_pred ChHHHHHHHHHHh
Q 045686 314 SPEAALDLFRYKV 326 (885)
Q Consensus 314 ~~~~~~~Lf~~~~ 326 (885)
++++..+++.++.
T Consensus 151 ~~~~~~~~~~~~f 163 (166)
T PF05729_consen 151 SEEDIKQYLRKYF 163 (166)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998776
No 38
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.81 E-value=3e-10 Score=116.97 Aligned_cols=291 Identities=19% Similarity=0.136 Sum_probs=153.6
Q ss_pred chhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcC-chhh-hcccccceeeccCC-cccc--cChhhhcccc
Q 045686 537 PQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQL-PEEI-GRLKNLHHLNLSNT-SIGC--LPTAIKRLIK 611 (885)
Q Consensus 537 ~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~l-p~~i-~~L~~L~~L~Ls~~-~i~~--lp~~i~~L~~ 611 (885)
..|+.|.+.++.-..+.-...+...+++++.|++.+|..++.- -.++ ..+.+|++|++..| .|+. +-.....+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 3678888888833221122334567889999999998655431 1122 35888999999886 4532 2223456889
Q ss_pred ccEeecCCcccccccCC-cccccCcccceecccccccccccCcccccccchhhhc-CccCCcceeEEEechhhHHhhhCC
Q 045686 612 LKVLLLDGIQCHLSIPE-GVISSLSSLQVFSCFSTELVELIDPLFNETAILDELN-CLEHLNDLSLTLFSTEAVDKLLNS 689 (885)
Q Consensus 612 L~~L~l~~~~~l~~lp~-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~-~L~~L~~L~l~~~~~~~~~~l~~~ 689 (885)
|++|+++.|..+..-.. -...++..|+.+.+.+|.-.+ ...+.... ....+-.+++..+..-.-..+...
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~--------le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i 289 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELE--------LEALLKAAAYCLEILKLNLQHCNQLTDEDLWLI 289 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhccccccc--------HHHHHHHhccChHhhccchhhhccccchHHHHH
Confidence 99999998875544110 113456666666666653221 00111110 001111111111111111112222
Q ss_pred CcccccceeEEecccc-ccccc---hhhhhhccceEEe-eccCccceeecCCCCCccccccccEEeeccccCCccc--cc
Q 045686 690 PKLQRCIRRLTIESSE-LLSLE---LGLMLSHLEILRI-KCGFMKRLNIDQGLNNRPSFSALRRLSIILCPDIQNL--TC 762 (885)
Q Consensus 690 ~~~~~~L~~L~l~~~~-~~~~~---l~~~~~~L~~L~l-~~~~l~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~l--~~ 762 (885)
...+..|+.|..++|. ..... +...+.+|+.|.+ +|..+.+....... .+.+.|+.+++..|....+- ..
T Consensus 290 ~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~---rn~~~Le~l~~e~~~~~~d~tL~s 366 (483)
T KOG4341|consen 290 ACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLG---RNCPHLERLDLEECGLITDGTLAS 366 (483)
T ss_pred hhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhh---cCChhhhhhcccccceehhhhHhh
Confidence 2233456677776665 22222 3333467777777 56655544433332 34667777777777433331 11
Q ss_pred -cccCCCccEEeEeccCCchhhhcccccCCCcccccccccceecccccccccccc-CCccCCCCccEEeeccCCCCCCcC
Q 045686 763 -LVHVPSLQFLSLSNCHSLEEIVGTYASGSSESRNYFSNLMAVDLDGLPTLRSIC-SGTVAFPSLQTLSITGCPSLKKLP 840 (885)
Q Consensus 763 -l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~p~L~~L~i~~C~~L~~lp 840 (885)
-.++|.|+.|.|+.|..+++... ........++..|+.|.+++||.+.+-. .....+++|+.+++.+|...++=|
T Consensus 367 ls~~C~~lr~lslshce~itD~gi---~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~ 443 (483)
T KOG4341|consen 367 LSRNCPRLRVLSLSHCELITDEGI---RHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEA 443 (483)
T ss_pred hccCCchhccCChhhhhhhhhhhh---hhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhh
Confidence 13567777777777766555411 1111234456667777777777665432 234456777777777776666554
Q ss_pred C
Q 045686 841 F 841 (885)
Q Consensus 841 ~ 841 (885)
.
T Consensus 444 i 444 (483)
T KOG4341|consen 444 I 444 (483)
T ss_pred h
Confidence 4
No 39
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.79 E-value=6.1e-08 Score=115.99 Aligned_cols=314 Identities=16% Similarity=0.208 Sum_probs=175.8
Q ss_pred CccchhHHHHHHHHHhhc---CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCccc---HHHH-----
Q 045686 153 KTVGLDSIISEVWRCIED---HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDAN---LEKI----- 221 (885)
Q Consensus 153 ~~vgr~~~~~~l~~~L~~---~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~---~~~~----- 221 (885)
+++||+.+++.|...+.+ +...++.+.|..|+|||+|++.|........++|-...+-....+.. ....
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~ 80 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLM 80 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHH
Confidence 378999999999999854 66789999999999999999999988753212221111111111111 1112
Q ss_pred --------------HHHHHHHcCCCccc--------------------cCCCChhHHHH-----HHHHHh-cCCCeEEEE
Q 045686 222 --------------QESILRRFEIPDQM--------------------WIGKDEDGRAN-----EILSNL-RGKKFVLLL 261 (885)
Q Consensus 222 --------------~~~i~~~l~~~~~~--------------------~~~~~~~~~~~-----~l~~~l-~~k~~LlVL 261 (885)
...++..+|..... ..+...+.+.. .+.... +.++.++|+
T Consensus 81 ~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~l 160 (849)
T COG3899 81 GQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVL 160 (849)
T ss_pred HHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEE
Confidence 22233333321100 00111111111 122222 356999999
Q ss_pred ecCCCcccccccccccccccc---CCCCCEEEE--EcCCh--hHHhhhcccceeeccCCChHHHHHHHHHHhcCcccCCc
Q 045686 262 DDVWERLDLSKVGVSDLLDDS---SQTGSKIVF--TTRSE--EVCGEMGARRRFRVECLSPEAALDLFRYKVGEDVYSSH 334 (885)
Q Consensus 262 Ddv~~~~~~~~~~~~~~l~~~---~~~gs~Iiv--TTR~~--~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~ 334 (885)
||+...+...-..+...+... .-....|.. |.+.. .+-........+.|.||+..+...+.....+......
T Consensus 161 eDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~~~- 239 (849)
T COG3899 161 EDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKLLP- 239 (849)
T ss_pred ecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCccccc-
Confidence 999543211000000000000 000112322 33322 1222233446899999999999999999997643322
Q ss_pred cchHHHHHHHHHHhCCchhHHHHHHHHHhcC------CChhhHHHHHHHHhcCcccccCCCCcccccccccccccccchh
Q 045686 335 FEISNLAQTVVEECRGLPLALVTIGHAMASR------MGPTQWRYAVGELQRYPFKFAGMGNSVFPILRFSYDSLREDIF 408 (885)
Q Consensus 335 ~~~~~~~~~I~~~c~GlPLai~~~~~~l~~~------~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~ 408 (885)
.+....|+++..|+|+.+..+-..+... .+...|+.-...+.. .+..+.+...+..-.+.||.. .
T Consensus 240 ---~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~-----~~~~~~vv~~l~~rl~kL~~~-t 310 (849)
T COG3899 240 ---APLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGI-----LATTDAVVEFLAARLQKLPGT-T 310 (849)
T ss_pred ---chHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCC-----chhhHHHHHHHHHHHhcCCHH-H
Confidence 3458999999999999999999888874 344555443222211 111123455677889999996 8
Q ss_pred hhHHhhhccCCCCceecHHHHHHHHHhcCcCCCCCCCChHHHHHHHHHHhcccccCC-----CCCC---cEEEehhHHHH
Q 045686 409 KTCFLYCALFPEEHNITKDELIQLWIGEGFLNGISPRDQGEYIIESLKLACLLERGE-----NSED---SVKMHNLIRDM 480 (885)
Q Consensus 409 k~cfl~~s~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~l~~L~~~~ll~~~~-----~~~~---~~~mHdlv~~~ 480 (885)
+......|++-. .|+.+.|...+-. .....+...++.|....++-..+ .... +-..||.|++.
T Consensus 311 ~~Vl~~AA~iG~--~F~l~~La~l~~~-------~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqa 381 (849)
T COG3899 311 REVLKAAACIGN--RFDLDTLAALAED-------SPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQA 381 (849)
T ss_pred HHHHHHHHHhCc--cCCHHHHHHHHhh-------chHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHHH
Confidence 999999998854 4556666655422 12344555555555555543221 1111 22578888888
Q ss_pred HHHHh
Q 045686 481 ALELA 485 (885)
Q Consensus 481 a~~~~ 485 (885)
|...-
T Consensus 382 aY~~i 386 (849)
T COG3899 382 AYNLI 386 (849)
T ss_pred HhccC
Confidence 76543
No 40
>PRK06893 DNA replication initiation factor; Validated
Probab=98.78 E-value=8.3e-08 Score=97.41 Aligned_cols=156 Identities=13% Similarity=0.199 Sum_probs=95.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHHHcCCCccccCCCChhHHHHHHHH
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILRRFEIPDQMWIGKDEDGRANEILS 250 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 250 (885)
...+.+.|+|++|+|||+|++.+++.... . ...+.|+++.... .... .+.+
T Consensus 37 ~~~~~l~l~G~~G~GKThL~~ai~~~~~~--~-~~~~~y~~~~~~~---~~~~-----------------------~~~~ 87 (229)
T PRK06893 37 LQQPFFYIWGGKSSGKSHLLKAVSNHYLL--N-QRTAIYIPLSKSQ---YFSP-----------------------AVLE 87 (229)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHHHHH--c-CCCeEEeeHHHhh---hhhH-----------------------HHHh
Confidence 34567899999999999999999998642 1 2345666653110 0000 1111
Q ss_pred HhcCCCeEEEEecCCCcc---ccccccccccccccCCCCCEEEEE-cCC---------hhHHhhhcccceeeccCCChHH
Q 045686 251 NLRGKKFVLLLDDVWERL---DLSKVGVSDLLDDSSQTGSKIVFT-TRS---------EEVCGEMGARRRFRVECLSPEA 317 (885)
Q Consensus 251 ~l~~k~~LlVLDdv~~~~---~~~~~~~~~~l~~~~~~gs~IivT-TR~---------~~v~~~~~~~~~~~l~~L~~~~ 317 (885)
.+. +.-+||+||+|... .|......+ +......|..+||+ ++. +++...+.....++++++++++
T Consensus 88 ~~~-~~dlLilDDi~~~~~~~~~~~~l~~l-~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~ 165 (229)
T PRK06893 88 NLE-QQDLVCLDDLQAVIGNEEWELAIFDL-FNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQ 165 (229)
T ss_pred hcc-cCCEEEEeChhhhcCChHHHHHHHHH-HHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHH
Confidence 122 34599999998642 222111110 10122345666554 443 3556666666789999999999
Q ss_pred HHHHHHHHhcCcccCCccchHHHHHHHHHHhCCchhHHHHHHH
Q 045686 318 ALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPLALVTIGH 360 (885)
Q Consensus 318 ~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~ 360 (885)
.++++++.+.......+ +++..-|++.+.|..-++..+-.
T Consensus 166 ~~~iL~~~a~~~~l~l~---~~v~~~L~~~~~~d~r~l~~~l~ 205 (229)
T PRK06893 166 KIIVLQRNAYQRGIELS---DEVANFLLKRLDRDMHTLFDALD 205 (229)
T ss_pred HHHHHHHHHHHcCCCCC---HHHHHHHHHhccCCHHHHHHHHH
Confidence 99999998865443333 34578899999887766654443
No 41
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=4.9e-10 Score=116.01 Aligned_cols=160 Identities=20% Similarity=0.206 Sum_probs=105.6
Q ss_pred ccceEEEecccCccccccc-ccCCCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCchh--hhcccc
Q 045686 512 WHEAVRLSLWGSSIDFLAL-VEAPSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPEE--IGRLKN 588 (885)
Q Consensus 512 ~~~~~~l~l~~~~i~~~~~-~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~--i~~L~~ 588 (885)
+++++.+++.++.+..... .....|++++.|+|+.|-+.....--.+...+++|+.|+|+.| .+....++ -..+.+
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~N-rl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSN-RLSNFISSNTTLLLSH 198 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccc-cccCCccccchhhhhh
Confidence 4578888888777765211 2457799999999999855442223445678999999999998 44433222 235788
Q ss_pred cceeeccCCccc--ccChhhhccccccEeecCCcccccccCCcccccCcccceecccccccccccCcccccccchhhhcC
Q 045686 589 LHHLNLSNTSIG--CLPTAIKRLIKLKVLLLDGIQCHLSIPEGVISSLSSLQVFSCFSTELVELIDPLFNETAILDELNC 666 (885)
Q Consensus 589 L~~L~Ls~~~i~--~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~ 666 (885)
|+.|.|+.|.+. .+-.....+++|..|++.+|..+...... ..-+..|+.|++++|.+... .....+..
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~-~~i~~~L~~LdLs~N~li~~--------~~~~~~~~ 269 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS-TKILQTLQELDLSNNNLIDF--------DQGYKVGT 269 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch-hhhhhHHhhccccCCccccc--------cccccccc
Confidence 999999999874 34444567899999999998423222222 45677899999999887631 22334455
Q ss_pred ccCCcceeEEEechh
Q 045686 667 LEHLNDLSLTLFSTE 681 (885)
Q Consensus 667 L~~L~~L~l~~~~~~ 681 (885)
|+.|+.|.+..++..
T Consensus 270 l~~L~~Lnls~tgi~ 284 (505)
T KOG3207|consen 270 LPGLNQLNLSSTGIA 284 (505)
T ss_pred ccchhhhhccccCcc
Confidence 666666666554443
No 42
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.76 E-value=8.7e-08 Score=99.29 Aligned_cols=173 Identities=20% Similarity=0.253 Sum_probs=104.5
Q ss_pred CCccchhHHH---HHHHHHhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHHH
Q 045686 152 GKTVGLDSII---SEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILRR 228 (885)
Q Consensus 152 ~~~vgr~~~~---~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~ 228 (885)
.++||.+..+ .-|.+++..+...-+..||++|+||||||+.++.... ..|. .++...+-.+-++++
T Consensus 24 de~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~---~~f~-----~~sAv~~gvkdlr~i--- 92 (436)
T COG2256 24 DEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTN---AAFE-----ALSAVTSGVKDLREI--- 92 (436)
T ss_pred HHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhC---CceE-----EeccccccHHHHHHH---
Confidence 4567766544 3455667778888888999999999999999998762 3443 222222111111122
Q ss_pred cCCCccccCCCChhHHHHHH-HHHhcCCCeEEEEecCCCccccccccccccccccCCCCCEEEE--EcCChhH---Hhhh
Q 045686 229 FEIPDQMWIGKDEDGRANEI-LSNLRGKKFVLLLDDVWERLDLSKVGVSDLLDDSSQTGSKIVF--TTRSEEV---CGEM 302 (885)
Q Consensus 229 l~~~~~~~~~~~~~~~~~~l-~~~l~~k~~LlVLDdv~~~~~~~~~~~~~~l~~~~~~gs~Iiv--TTR~~~v---~~~~ 302 (885)
.+.- .....+++.+|++|+|..-.- ......++ ....|.-|+| ||.++.. ....
T Consensus 93 ----------------~e~a~~~~~~gr~tiLflDEIHRfnK-~QQD~lLp---~vE~G~iilIGATTENPsF~ln~ALl 152 (436)
T COG2256 93 ----------------IEEARKNRLLGRRTILFLDEIHRFNK-AQQDALLP---HVENGTIILIGATTENPSFELNPALL 152 (436)
T ss_pred ----------------HHHHHHHHhcCCceEEEEehhhhcCh-hhhhhhhh---hhcCCeEEEEeccCCCCCeeecHHHh
Confidence 1222 122347899999999965321 11112223 4456776776 7777643 2223
Q ss_pred cccceeeccCCChHHHHHHHHHHhcCccc--C-Cccch-HHHHHHHHHHhCCchhHH
Q 045686 303 GARRRFRVECLSPEAALDLFRYKVGEDVY--S-SHFEI-SNLAQTVVEECRGLPLAL 355 (885)
Q Consensus 303 ~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~--~-~~~~~-~~~~~~I~~~c~GlPLai 355 (885)
+-..++.+++|+.++-.+++.+.+-.... . ....+ ++...-+++.++|--.++
T Consensus 153 SR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~a 209 (436)
T COG2256 153 SRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRA 209 (436)
T ss_pred hhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHH
Confidence 34578999999999999999985522111 1 11112 335677888888866543
No 43
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.74 E-value=1.2e-09 Score=116.68 Aligned_cols=193 Identities=25% Similarity=0.319 Sum_probs=154.8
Q ss_pred CCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCchhhhcccccceeeccCCcccccChhhhccccccE
Q 045686 535 SCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPEEIGRLKNLHHLNLSNTSIGCLPTAIKRLIKLKV 614 (885)
Q Consensus 535 ~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~ 614 (885)
.+.--...+++.|.+.. +|.. ++.|..|..|.|+.| .+..+|..+++|..|.+|||+.|++..+|..++.|+ |+.
T Consensus 73 ~ltdt~~aDlsrNR~~e--lp~~-~~~f~~Le~liLy~n-~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkv 147 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFSE--LPEE-ACAFVSLESLILYHN-CIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKV 147 (722)
T ss_pred cccchhhhhcccccccc--CchH-HHHHHHHHHHHHHhc-cceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-cee
Confidence 34455678899999888 8877 788899999999999 899999999999999999999999999999999887 999
Q ss_pred eecCCcccccccCCcccccCcccceecccccccccccCcccccccchhhhcCccCCcceeEEEechhhHHhhhCCCcccc
Q 045686 615 LLLDGIQCHLSIPEGVISSLSSLQVFSCFSTELVELIDPLFNETAILDELNCLEHLNDLSLTLFSTEAVDKLLNSPKLQR 694 (885)
Q Consensus 615 L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ 694 (885)
|-+++|+ ++.+|.+ ++.+..|.+|+.+.|.+.. ....+..|..|+.|.+..
T Consensus 148 li~sNNk-l~~lp~~-ig~~~tl~~ld~s~nei~s----------lpsql~~l~slr~l~vrR----------------- 198 (722)
T KOG0532|consen 148 LIVSNNK-LTSLPEE-IGLLPTLAHLDVSKNEIQS----------LPSQLGYLTSLRDLNVRR----------------- 198 (722)
T ss_pred EEEecCc-cccCCcc-cccchhHHHhhhhhhhhhh----------chHHhhhHHHHHHHHHhh-----------------
Confidence 9999997 9999999 8999999999999998754 444555555555444432
Q ss_pred cceeEEeccccccccc--hhhhhhccceEEeeccCccceeecCCCCCccccccccEEeeccccCCcccc----ccccCCC
Q 045686 695 CIRRLTIESSELLSLE--LGLMLSHLEILRIKCGFMKRLNIDQGLNNRPSFSALRRLSIILCPDIQNLT----CLVHVPS 768 (885)
Q Consensus 695 ~L~~L~l~~~~~~~~~--l~~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~----~l~~l~~ 768 (885)
|+...++ +.. -.|..|+++||++..+|..+.. +..|+.|.|.+|+ ++++| .-|...-
T Consensus 199 ---------n~l~~lp~El~~--LpLi~lDfScNkis~iPv~fr~-----m~~Lq~l~LenNP-LqSPPAqIC~kGkVHI 261 (722)
T KOG0532|consen 199 ---------NHLEDLPEELCS--LPLIRLDFSCNKISYLPVDFRK-----MRHLQVLQLENNP-LQSPPAQICEKGKVHI 261 (722)
T ss_pred ---------hhhhhCCHHHhC--CceeeeecccCceeecchhhhh-----hhhheeeeeccCC-CCCChHHHHhccceee
Confidence 2211111 222 4578899999999999998876 8999999999995 77765 2356777
Q ss_pred ccEEeEeccC
Q 045686 769 LQFLSLSNCH 778 (885)
Q Consensus 769 L~~L~L~~~~ 778 (885)
.++|++.-|.
T Consensus 262 FKyL~~qA~q 271 (722)
T KOG0532|consen 262 FKYLSTQACQ 271 (722)
T ss_pred eeeecchhcc
Confidence 8999999984
No 44
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=2.1e-09 Score=111.37 Aligned_cols=110 Identities=19% Similarity=0.194 Sum_probs=68.1
Q ss_pred CCCchhHHHHHhhcCCccCCCCc-hhhhcCCcccEEecCCCCCCCcC---chhhhcccccceeeccCCcccccChh--hh
Q 045686 534 PSCPQVRTLLARLTMLHTLPIPS-RFFDSMDALEVLDLSYNLDLNQL---PEEIGRLKNLHHLNLSNTSIGCLPTA--IK 607 (885)
Q Consensus 534 ~~~~~Lr~L~l~~~~l~~~~~~~-~~~~~l~~L~~L~Ls~~~~i~~l---p~~i~~L~~L~~L~Ls~~~i~~lp~~--i~ 607 (885)
.++++||...|.++.... .+. .....|++++.||||.| .+... -.....|++|+.|+|+.|++...-.+ -.
T Consensus 118 sn~kkL~~IsLdn~~V~~--~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~ 194 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVED--AGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTL 194 (505)
T ss_pred hhHHhhhheeecCccccc--cchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhcccccccccCCccccchh
Confidence 467788888888876654 331 33567888888888887 55432 33345678888888888866433222 23
Q ss_pred ccccccEeecCCcccccccCCcccccCcccceecccccc
Q 045686 608 RLIKLKVLLLDGIQCHLSIPEGVISSLSSLQVFSCFSTE 646 (885)
Q Consensus 608 ~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~ 646 (885)
.+++|+.|.+++|.....--......+++|+.|+++.|.
T Consensus 195 ~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~ 233 (505)
T KOG3207|consen 195 LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANE 233 (505)
T ss_pred hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccc
Confidence 567777778887762211111123456777777777774
No 45
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.72 E-value=2.6e-07 Score=105.08 Aligned_cols=209 Identities=13% Similarity=0.129 Sum_probs=124.3
Q ss_pred CCccchhHHHHHHHHHhhc-----CCCeEEEEEcCCCCcHHHHHHHHHhhhccC--CCCcc--EEEEEEEcCcccHHHHH
Q 045686 152 GKTVGLDSIISEVWRCIED-----HNEKVIGLYGMGGVGKTTLLKKLNNKFRDT--GHDFD--LVIWVKVSRDANLEKIQ 222 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~-----~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~--~~~f~--~~~wv~v~~~~~~~~~~ 222 (885)
+.+.|||+++++|...|.. ....++.|.|++|.|||+.++.|....... ..... .+++|.+..-.+...++
T Consensus 755 D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIY 834 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAY 834 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHH
Confidence 4567999999999998843 334678899999999999999998776321 11111 35677777767788888
Q ss_pred HHHHHHcCCCccccCCCChhHHHHHHHHHhc---CCCeEEEEecCCCcccc-ccccccccccccCCCCCEEEE--EcCCh
Q 045686 223 ESILRRFEIPDQMWIGKDEDGRANEILSNLR---GKKFVLLLDDVWERLDL-SKVGVSDLLDDSSQTGSKIVF--TTRSE 296 (885)
Q Consensus 223 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~---~k~~LlVLDdv~~~~~~-~~~~~~~~l~~~~~~gs~Iiv--TTR~~ 296 (885)
..|+.++....+. .+....+....+...+. +...+|||||++....- ..+... .+......+++|+| +|.+.
T Consensus 835 qvI~qqL~g~~P~-~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYn-LFR~~~~s~SKLiLIGISNdl 912 (1164)
T PTZ00112 835 QVLYKQLFNKKPP-NALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFT-LFDWPTKINSKLVLIAISNTM 912 (1164)
T ss_pred HHHHHHHcCCCCC-ccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHH-HHHHhhccCCeEEEEEecCch
Confidence 8898888443321 22233445555555542 23469999999754211 111100 00101223555554 44332
Q ss_pred hH--------HhhhcccceeeccCCChHHHHHHHHHHhcCc-ccCCccchHHHHHHHHHHhCCchhHHHHHHHHHh
Q 045686 297 EV--------CGEMGARRRFRVECLSPEAALDLFRYKVGED-VYSSHFEISNLAQTVVEECRGLPLALVTIGHAMA 363 (885)
Q Consensus 297 ~v--------~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~-~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~l~ 363 (885)
+. ...+. ...+...+++.++-.+++..++... ..-.+..++-+|+.++...|-.-.||.++-.+..
T Consensus 913 DLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgE 987 (1164)
T PTZ00112 913 DLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFE 987 (1164)
T ss_pred hcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHh
Confidence 22 12221 2246779999999999999988532 1222233444455555555556667766555443
No 46
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.70 E-value=6e-09 Score=102.48 Aligned_cols=130 Identities=22% Similarity=0.266 Sum_probs=57.2
Q ss_pred cCccCCcceeEEEechhhHHhhhCCCcccccceeEEeccccccccchhhhhhccceEEeeccCccceeecCCCCCccccc
Q 045686 665 NCLEHLNDLSLTLFSTEAVDKLLNSPKLQRCIRRLTIESSELLSLELGLMLSHLEILRIKCGFMKRLNIDQGLNNRPSFS 744 (885)
Q Consensus 665 ~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~l~ 744 (885)
...+.|+.++++.+....+. ...++.+.++.|+++.|.+..+.-...+++|..|++++|.+..+.-+.. .+.
T Consensus 281 dTWq~LtelDLS~N~I~~iD---ESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~-----KLG 352 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLITQID---ESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHL-----KLG 352 (490)
T ss_pred chHhhhhhccccccchhhhh---hhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHh-----hhc
Confidence 33344445555444332222 2222333455555555553333322222555555555555444332222 145
Q ss_pred cccEEeeccccCCccccccccCCCccEEeEeccCCchhhhcccccCCCcccccccccceecccccc
Q 045686 745 ALRRLSIILCPDIQNLTCLVHVPSLQFLSLSNCHSLEEIVGTYASGSSESRNYFSNLMAVDLDGLP 810 (885)
Q Consensus 745 ~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~ 810 (885)
+++.|.|+++ .+.+++.++++=+|.+|++++| .++.+.. ...++.+|.|++|.|.++|
T Consensus 353 NIKtL~La~N-~iE~LSGL~KLYSLvnLDl~~N-~Ie~lde------V~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 353 NIKTLKLAQN-KIETLSGLRKLYSLVNLDLSSN-QIEELDE------VNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred CEeeeehhhh-hHhhhhhhHhhhhheecccccc-chhhHHH------hcccccccHHHHHhhcCCC
Confidence 5555555555 4555555555555555555554 2333211 1234455555555555443
No 47
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.70 E-value=1.2e-09 Score=107.19 Aligned_cols=131 Identities=27% Similarity=0.357 Sum_probs=94.6
Q ss_pred CCccceEEEecccCccccccccc-CCCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCchhhhcccc
Q 045686 510 DGWHEAVRLSLWGSSIDFLALVE-APSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPEEIGRLKN 588 (885)
Q Consensus 510 ~~~~~~~~l~l~~~~i~~~~~~~-~~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~ 588 (885)
..|+.++.+++++|.|+. +.. ..-.|++|.|++++|.+.. +.. +..+.+|..||||+| .+.++-.+=.+|-|
T Consensus 281 dTWq~LtelDLS~N~I~~--iDESvKL~Pkir~L~lS~N~i~~--v~n--La~L~~L~~LDLS~N-~Ls~~~Gwh~KLGN 353 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLITQ--IDESVKLAPKLRRLILSQNRIRT--VQN--LAELPQLQLLDLSGN-LLAECVGWHLKLGN 353 (490)
T ss_pred chHhhhhhccccccchhh--hhhhhhhccceeEEeccccceee--ehh--hhhcccceEeecccc-hhHhhhhhHhhhcC
Confidence 446777888888887776 332 2345788888888887766 544 677888888888888 67666666567778
Q ss_pred cceeeccCCcccccChhhhccccccEeecCCcccccccCC-cccccCcccceeccccccccc
Q 045686 589 LHHLNLSNTSIGCLPTAIKRLIKLKVLLLDGIQCHLSIPE-GVISSLSSLQVFSCFSTELVE 649 (885)
Q Consensus 589 L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~-~~i~~L~~L~~L~l~~~~~~~ 649 (885)
.++|+|++|.|..+. ++++|.+|..||+++|+ ++.+.. ..|++|+.|++|.+.+|.+.+
T Consensus 354 IKtL~La~N~iE~LS-GL~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 354 IKTLKLAQNKIETLS-GLRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred EeeeehhhhhHhhhh-hhHhhhhheeccccccc-hhhHHHhcccccccHHHHHhhcCCCccc
Confidence 888888888877775 67788888888888886 555442 127888888888888877654
No 48
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.68 E-value=1.9e-07 Score=95.32 Aligned_cols=175 Identities=15% Similarity=0.180 Sum_probs=105.1
Q ss_pred CCcc--chhHHHHHHHHHhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHHHc
Q 045686 152 GKTV--GLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILRRF 229 (885)
Q Consensus 152 ~~~v--gr~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l 229 (885)
++|+ +.+..++.+.+++.......+.|+|++|+|||+||+.+++.... .....++++++.-.. ..
T Consensus 15 ~~~~~~~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~---~~~~~~~i~~~~~~~------~~---- 81 (226)
T TIGR03420 15 DNFYAGGNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEE---RGKSAIYLPLAELAQ------AD---- 81 (226)
T ss_pred cCcCcCCcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHh---cCCcEEEEeHHHHHH------hH----
Confidence 3455 34557777777766666788999999999999999999987632 222345555432211 00
Q ss_pred CCCccccCCCChhHHHHHHHHHhcCCCeEEEEecCCCccc---ccc-ccccccccccCCCCCEEEEEcCChh--------
Q 045686 230 EIPDQMWIGKDEDGRANEILSNLRGKKFVLLLDDVWERLD---LSK-VGVSDLLDDSSQTGSKIVFTTRSEE-------- 297 (885)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~---~~~-~~~~~~l~~~~~~gs~IivTTR~~~-------- 297 (885)
..+...+. +.-+||+||++.... |.. +...+. .....+..+|+||+...
T Consensus 82 ----------------~~~~~~~~-~~~lLvIDdi~~l~~~~~~~~~L~~~l~--~~~~~~~~iIits~~~~~~~~~~~~ 142 (226)
T TIGR03420 82 ----------------PEVLEGLE-QADLVCLDDVEAIAGQPEWQEALFHLYN--RVREAGGRLLIAGRAAPAQLPLRLP 142 (226)
T ss_pred ----------------HHHHhhcc-cCCEEEEeChhhhcCChHHHHHHHHHHH--HHHHcCCeEEEECCCChHHCCcccH
Confidence 01111122 234899999975432 111 111111 11223458889887532
Q ss_pred -HHhhhcccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCchhHHHHHHHH
Q 045686 298 -VCGEMGARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPLALVTIGHA 361 (885)
Q Consensus 298 -v~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~ 361 (885)
+...+.....+++.++++++...++.+.+.......+ .+..+.|++.++|.|..+..+...
T Consensus 143 ~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~---~~~l~~L~~~~~gn~r~L~~~l~~ 204 (226)
T TIGR03420 143 DLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLP---DEVADYLLRHGSRDMGSLMALLDA 204 (226)
T ss_pred HHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhccCCHHHHHHHHHH
Confidence 2223323467899999999999999876532222222 345788888899999877665433
No 49
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.66 E-value=1.1e-08 Score=114.06 Aligned_cols=175 Identities=27% Similarity=0.374 Sum_probs=91.9
Q ss_pred hcCCcccEEecCCCCCCCcCchhhhccc-ccceeeccCCcccccChhhhccccccEeecCCcccccccCCcccccCcccc
Q 045686 560 DSMDALEVLDLSYNLDLNQLPEEIGRLK-NLHHLNLSNTSIGCLPTAIKRLIKLKVLLLDGIQCHLSIPEGVISSLSSLQ 638 (885)
Q Consensus 560 ~~l~~L~~L~Ls~~~~i~~lp~~i~~L~-~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~ 638 (885)
..+..+..|++.++ .+..+|...+.+. +|+.|++++|++..+|..++.+++|+.|++++|+ +..+|.. .+.+++|+
T Consensus 113 ~~~~~l~~L~l~~n-~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~-~~~~~~L~ 189 (394)
T COG4886 113 LELTNLTSLDLDNN-NITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND-LSDLPKL-LSNLSNLN 189 (394)
T ss_pred hcccceeEEecCCc-ccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCch-hhhhhhh-hhhhhhhh
Confidence 33455666666666 6666666555553 6666666666666666566666666666666665 5556553 33566666
Q ss_pred eecccccccccccCcccccccchhhhcCccCCcceeEEEechhhHHhhhCCCcccccceeEEecccc-ccccc-hhhhhh
Q 045686 639 VFSCFSTELVELIDPLFNETAILDELNCLEHLNDLSLTLFSTEAVDKLLNSPKLQRCIRRLTIESSE-LLSLE-LGLMLS 716 (885)
Q Consensus 639 ~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~-l~~~~~ 716 (885)
.|++++|.+... ......+. .|+.|.+++|. ..... +.. +.
T Consensus 190 ~L~ls~N~i~~l----------~~~~~~~~--------------------------~L~~l~~~~N~~~~~~~~~~~-~~ 232 (394)
T COG4886 190 NLDLSGNKISDL----------PPEIELLS--------------------------ALEELDLSNNSIIELLSSLSN-LK 232 (394)
T ss_pred heeccCCccccC----------chhhhhhh--------------------------hhhhhhhcCCcceecchhhhh-cc
Confidence 666666655421 00001111 12222222221 11111 111 13
Q ss_pred ccceEEeeccCccceeecCCCCCccccccccEEeeccccCCccccccccCCCccEEeEeccCCc
Q 045686 717 HLEILRIKCGFMKRLNIDQGLNNRPSFSALRRLSIILCPDIQNLTCLVHVPSLQFLSLSNCHSL 780 (885)
Q Consensus 717 ~L~~L~l~~~~l~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l 780 (885)
++..|.+.++.+..++.... .+++|+.|++++| .+++++.++.+.+|+.|+++++...
T Consensus 233 ~l~~l~l~~n~~~~~~~~~~-----~l~~l~~L~~s~n-~i~~i~~~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 233 NLSGLELSNNKLEDLPESIG-----NLSNLETLDLSNN-QISSISSLGSLTNLRELDLSGNSLS 290 (394)
T ss_pred cccccccCCceeeeccchhc-----cccccceeccccc-cccccccccccCccCEEeccCcccc
Confidence 44444444444443221111 2566777777777 5777666777777777777776543
No 50
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=2.6e-06 Score=91.80 Aligned_cols=202 Identities=17% Similarity=0.222 Sum_probs=129.8
Q ss_pred CCccchhHHHHHHHHHhhc----CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHH
Q 045686 152 GKTVGLDSIISEVWRCIED----HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILR 227 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~----~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~ 227 (885)
+.+.+|+++++++...|.. +.+.-+.|+|.+|+|||+.++.+...........+ +++|++....+..+++..|+.
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~-~~yINc~~~~t~~~i~~~i~~ 95 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVE-VVYINCLELRTPYQVLSKILN 95 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCc-eEEEeeeeCCCHHHHHHHHHH
Confidence 3488999999999988843 44445899999999999999999998864322222 789999999999999999999
Q ss_pred HcCCCccccCCCChhHHHHHHHHHhc--CCCeEEEEecCCCccccc-cccccccccccCCCCCEEE--EEcCChhHHh--
Q 045686 228 RFEIPDQMWIGKDEDGRANEILSNLR--GKKFVLLLDDVWERLDLS-KVGVSDLLDDSSQTGSKIV--FTTRSEEVCG-- 300 (885)
Q Consensus 228 ~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVLDdv~~~~~~~-~~~~~~~l~~~~~~gs~Ii--vTTR~~~v~~-- 300 (885)
+++... ..+....+....+.+.+. ++.+++|||+++...+-. ...-.+. +.....+++|+ .++-+..+..
T Consensus 96 ~~~~~p--~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~-r~~~~~~~~v~vi~i~n~~~~~~~l 172 (366)
T COG1474 96 KLGKVP--LTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLL-RAPGENKVKVSIIAVSNDDKFLDYL 172 (366)
T ss_pred HcCCCC--CCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHH-hhccccceeEEEEEEeccHHHHHHh
Confidence 996322 145566677777777775 478999999997654332 1111110 00112245443 3444443322
Q ss_pred ------hhcccceeeccCCChHHHHHHHHHHhc---CcccCCccchHHHHHHHHHHhCCchhHHHHH
Q 045686 301 ------EMGARRRFRVECLSPEAALDLFRYKVG---EDVYSSHFEISNLAQTVVEECRGLPLALVTI 358 (885)
Q Consensus 301 ------~~~~~~~~~l~~L~~~~~~~Lf~~~~~---~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~ 358 (885)
.++. ..+...+-+.+|-...+..++. ....-++.-++-++...++..|-.-.||..+
T Consensus 173 d~rv~s~l~~-~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidil 238 (366)
T COG1474 173 DPRVKSSLGP-SEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDIL 238 (366)
T ss_pred hhhhhhccCc-ceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHH
Confidence 2222 2378899999999999988773 2222222233333444444444455555543
No 51
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.61 E-value=4.9e-07 Score=100.55 Aligned_cols=179 Identities=17% Similarity=0.190 Sum_probs=104.8
Q ss_pred CCCccchhHHHHH---HHHHhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHH
Q 045686 151 IGKTVGLDSIISE---VWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILR 227 (885)
Q Consensus 151 ~~~~vgr~~~~~~---l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~ 227 (885)
.+++||++..+.. +.+++.......+.++|++|+||||+|+.+++... ..| +.++.......-...++
T Consensus 11 l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~---~~~-----~~l~a~~~~~~~ir~ii- 81 (413)
T PRK13342 11 LDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATD---APF-----EALSAVTSGVKDLREVI- 81 (413)
T ss_pred HHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhC---CCE-----EEEecccccHHHHHHHH-
Confidence 3568999988766 88888777777888999999999999999988763 222 22221111111111111
Q ss_pred HcCCCccccCCCChhHHHHHHHH-HhcCCCeEEEEecCCCccccccccccccccccCCCCCEEEE--EcCChh--HH-hh
Q 045686 228 RFEIPDQMWIGKDEDGRANEILS-NLRGKKFVLLLDDVWERLDLSKVGVSDLLDDSSQTGSKIVF--TTRSEE--VC-GE 301 (885)
Q Consensus 228 ~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVLDdv~~~~~~~~~~~~~~l~~~~~~gs~Iiv--TTR~~~--v~-~~ 301 (885)
..... ...+++.+|++||++.......- ..+. ....|..++| ||.+.. +. ..
T Consensus 82 ------------------~~~~~~~~~g~~~vL~IDEi~~l~~~~q~-~LL~---~le~~~iilI~att~n~~~~l~~aL 139 (413)
T PRK13342 82 ------------------EEARQRRSAGRRTILFIDEIHRFNKAQQD-ALLP---HVEDGTITLIGATTENPSFEVNPAL 139 (413)
T ss_pred ------------------HHHHHhhhcCCceEEEEechhhhCHHHHH-HHHH---HhhcCcEEEEEeCCCChhhhccHHH
Confidence 11111 12457889999999864221110 0011 1123444544 344432 11 11
Q ss_pred hcccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCchhHHHHHHH
Q 045686 302 MGARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPLALVTIGH 360 (885)
Q Consensus 302 ~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~ 360 (885)
......+.+.+++.++.+.++.+.+.........-..+..+.|++.|+|.+..+..+..
T Consensus 140 ~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le 198 (413)
T PRK13342 140 LSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLE 198 (413)
T ss_pred hccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 12236789999999999999998764311100011245578899999999977654443
No 52
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.55 E-value=1.4e-08 Score=113.31 Aligned_cols=214 Identities=26% Similarity=0.278 Sum_probs=123.5
Q ss_pred CCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCchhhhcccccceeeccCCcccccChhhhccccccE
Q 045686 535 SCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPEEIGRLKNLHHLNLSNTSIGCLPTAIKRLIKLKV 614 (885)
Q Consensus 535 ~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~ 614 (885)
.+..+..+.+..|.+.. +... +..++.|.+|++.+| .|..+...+..+++|++|++++|.|..+. ++..++.|+.
T Consensus 70 ~l~~l~~l~l~~n~i~~--~~~~-l~~~~~l~~l~l~~n-~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~ 144 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK--ILNH-LSKLKSLEALDLYDN-KIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKE 144 (414)
T ss_pred HhHhHHhhccchhhhhh--hhcc-cccccceeeeecccc-chhhcccchhhhhcchheecccccccccc-chhhccchhh
Confidence 45666667777776654 3332 567788888888888 77777766777888888888888887776 5777777888
Q ss_pred eecCCcccccccCCcccccCcccceecccccccccccCcccccccchhh--hcCccCCcceeEEEechhhHHhhhCCCcc
Q 045686 615 LLLDGIQCHLSIPEGVISSLSSLQVFSCFSTELVELIDPLFNETAILDE--LNCLEHLNDLSLTLFSTEAVDKLLNSPKL 692 (885)
Q Consensus 615 L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~--l~~L~~L~~L~l~~~~~~~~~~l~~~~~~ 692 (885)
|++++|. +..++. +..+++|+.+++++|.+.. +.. +..+.+|+.+.+..+....+..+....
T Consensus 145 L~l~~N~-i~~~~~--~~~l~~L~~l~l~~n~i~~-----------ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~-- 208 (414)
T KOG0531|consen 145 LNLSGNL-ISDISG--LESLKSLKLLDLSYNRIVD-----------IENDELSELISLEELDLGGNSIREIEGLDLLK-- 208 (414)
T ss_pred heeccCc-chhccC--CccchhhhcccCCcchhhh-----------hhhhhhhhccchHHHhccCCchhcccchHHHH--
Confidence 8888886 666664 6678888888888887653 222 344455555554443333322222111
Q ss_pred cccceeEEeccccccccchhhhhh--ccceEEeeccCccceeecCCCCCccccccccEEeeccccCCccccccccCCCcc
Q 045686 693 QRCIRRLTIESSELLSLELGLMLS--HLEILRIKCGFMKRLNIDQGLNNRPSFSALRRLSIILCPDIQNLTCLVHVPSLQ 770 (885)
Q Consensus 693 ~~~L~~L~l~~~~~~~~~l~~~~~--~L~~L~l~~~~l~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~ 770 (885)
.+..+.+..+.+..+.-..... +|+.+++..+.+..++.. ...+..+..|++.++ .+..+..+...+.+.
T Consensus 209 --~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i~~~~~~-----~~~~~~l~~l~~~~n-~~~~~~~~~~~~~~~ 280 (414)
T KOG0531|consen 209 --KLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNRISRSPEG-----LENLKNLPVLDLSSN-RISNLEGLERLPKLS 280 (414)
T ss_pred --HHHHhhcccccceeccCcccchhHHHHHHhcccCcccccccc-----ccccccccccchhhc-cccccccccccchHH
Confidence 2222234444322222111102 256666666665544211 122566666666655 444444444444555
Q ss_pred EEeEecc
Q 045686 771 FLSLSNC 777 (885)
Q Consensus 771 ~L~L~~~ 777 (885)
.+....+
T Consensus 281 ~~~~~~~ 287 (414)
T KOG0531|consen 281 ELWLNDN 287 (414)
T ss_pred HhccCcc
Confidence 5555444
No 53
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.53 E-value=4e-09 Score=108.80 Aligned_cols=298 Identities=17% Similarity=0.145 Sum_probs=180.0
Q ss_pred ceEEEecccCcccc-ccccc-CCCCchhHHHHHhhcC-CccCCCCchhhhcCCcccEEecCCCCCCCcCc--hhhhcccc
Q 045686 514 EAVRLSLWGSSIDF-LALVE-APSCPQVRTLLARLTM-LHTLPIPSRFFDSMDALEVLDLSYNLDLNQLP--EEIGRLKN 588 (885)
Q Consensus 514 ~~~~l~l~~~~i~~-~~~~~-~~~~~~Lr~L~l~~~~-l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp--~~i~~L~~ 588 (885)
.++.+++.++.-.. ..+.. ...||++..|.+.+|. ++. ..-.++-..++.|++|+|..|..++... .-...+++
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd-~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITD-SSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccH-HHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 35677777653221 11222 2678999999999884 322 1112334568899999999986776532 23456899
Q ss_pred cceeeccCC-cccc--cChhhhccccccEeecCCcccccccCCccc----ccCcccceecccccccccccCcccccccch
Q 045686 589 LHHLNLSNT-SIGC--LPTAIKRLIKLKVLLLDGIQCHLSIPEGVI----SSLSSLQVFSCFSTELVELIDPLFNETAIL 661 (885)
Q Consensus 589 L~~L~Ls~~-~i~~--lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i----~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l 661 (885)
|.||++++| .|.. +-.-..++.+|+.+.++||..+ +...+ ..+..+-.+++..|.... +....
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~---~le~l~~~~~~~~~i~~lnl~~c~~lT-------D~~~~ 287 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLEL---ELEALLKAAAYCLEILKLNLQHCNQLT-------DEDLW 287 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccc---cHHHHHHHhccChHhhccchhhhcccc-------chHHH
Confidence 999999998 5533 3333556777888888887522 22112 234445556655664332 11222
Q ss_pred hhhcCccCCcceeEEEechhhHHhhhCCCcccccceeEEecccc-cccc---chhhhhhccceEEe-eccCccceeecCC
Q 045686 662 DELNCLEHLNDLSLTLFSTEAVDKLLNSPKLQRCIRRLTIESSE-LLSL---ELGLMLSHLEILRI-KCGFMKRLNIDQG 736 (885)
Q Consensus 662 ~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~---~l~~~~~~L~~L~l-~~~~l~~l~~~~~ 736 (885)
..-..+..|+.+.........-..+..+..-..+|+.|.+..|. +... .+...+++|+.+++ .|..+.... .
T Consensus 288 ~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~t---L 364 (483)
T KOG4341|consen 288 LIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGT---L 364 (483)
T ss_pred HHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhh---H
Confidence 22234566777776655443333333333344589999999887 3222 24444588888888 443333221 1
Q ss_pred CCCccccccccEEeeccccCCccc--c----ccccCCCccEEeEeccCCchhhhcccccCCCcccccccccceecccccc
Q 045686 737 LNNRPSFSALRRLSIILCPDIQNL--T----CLVHVPSLQFLSLSNCHSLEEIVGTYASGSSESRNYFSNLMAVDLDGLP 810 (885)
Q Consensus 737 ~~~~~~l~~L~~L~L~~c~~l~~l--~----~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~ 810 (885)
.+...+++.|+.|.++.|..+++. . .-..+..|+.|.+++|+.+.+... .....+++|+.+++-+|.
T Consensus 365 ~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~L-------e~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 365 ASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATL-------EHLSICRNLERIELIDCQ 437 (483)
T ss_pred hhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHH-------HHHhhCcccceeeeechh
Confidence 112345899999999999776664 1 223577899999999998877643 456678899999988887
Q ss_pred ccccccC--CccCCCCccEEeecc
Q 045686 811 TLRSICS--GTVAFPSLQTLSITG 832 (885)
Q Consensus 811 ~l~~~~~--~~~~~p~L~~L~i~~ 832 (885)
....-+. ....+|++++.....
T Consensus 438 ~vtk~~i~~~~~~lp~i~v~a~~a 461 (483)
T KOG4341|consen 438 DVTKEAISRFATHLPNIKVHAYFA 461 (483)
T ss_pred hhhhhhhHHHHhhCccceehhhcc
Confidence 7765433 223466666555443
No 54
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.52 E-value=1.1e-06 Score=85.25 Aligned_cols=177 Identities=18% Similarity=0.233 Sum_probs=93.8
Q ss_pred CCCCccchhHHHHHHHHHhh-----cCCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHH
Q 045686 150 PIGKTVGLDSIISEVWRCIE-----DHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQES 224 (885)
Q Consensus 150 ~~~~~vgr~~~~~~l~~~L~-----~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~ 224 (885)
...+|||.+..++.+.-++. .+...-+.+||++|+||||||+.+++... ..|. +++... ++
T Consensus 22 ~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~---~~~~---~~sg~~---i~----- 87 (233)
T PF05496_consen 22 SLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELG---VNFK---ITSGPA---IE----- 87 (233)
T ss_dssp SCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT-----EE---EEECCC----------
T ss_pred CHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccC---CCeE---eccchh---hh-----
Confidence 34679999999988766553 24567789999999999999999999873 4442 222111 00
Q ss_pred HHHHcCCCccccCCCChhHHHHHHHHHhcCCCeEEEEecCCCccc---------cccccccccccccCCCC---------
Q 045686 225 ILRRFEIPDQMWIGKDEDGRANEILSNLRGKKFVLLLDDVWERLD---------LSKVGVSDLLDDSSQTG--------- 286 (885)
Q Consensus 225 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~---------~~~~~~~~~l~~~~~~g--------- 286 (885)
...+++..+. .+ +++.+|++|++..-.- .+....-... ..+.+
T Consensus 88 ---------------k~~dl~~il~-~l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiii--G~g~~ar~~~~~l~ 148 (233)
T PF05496_consen 88 ---------------KAGDLAAILT-NL-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIII--GKGPNARSIRINLP 148 (233)
T ss_dssp ---------------SCHHHHHHHH-T---TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEB--SSSSS-BEEEEE--
T ss_pred ---------------hHHHHHHHHH-hc-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEe--ccccccceeeccCC
Confidence 0111111111 12 2445677787764210 1111110000 11111
Q ss_pred --CEEEEEcCChhHHhhhcccc--eeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCchhHHHHHHHHH
Q 045686 287 --SKIVFTTRSEEVCGEMGARR--RFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPLALVTIGHAM 362 (885)
Q Consensus 287 --s~IivTTR~~~v~~~~~~~~--~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~l 362 (885)
+-|=-|||..-+...+.+.- ..+++..+.+|-.++..+.+..-....+ ++.+.+|++.|.|-|--+.-+-+..
T Consensus 149 ~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~---~~~~~~Ia~rsrGtPRiAnrll~rv 225 (233)
T PF05496_consen 149 PFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEID---EDAAEEIARRSRGTPRIANRLLRRV 225 (233)
T ss_dssp --EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE----HHHHHHHHHCTTTSHHHHHHHHHHH
T ss_pred CceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcC---HHHHHHHHHhcCCChHHHHHHHHHH
Confidence 22335888765554444432 3479999999999999988865443332 4569999999999997655444433
No 55
>PRK04195 replication factor C large subunit; Provisional
Probab=98.49 E-value=4.4e-06 Score=94.95 Aligned_cols=181 Identities=19% Similarity=0.228 Sum_probs=109.8
Q ss_pred CCccchhHHHHHHHHHhhc----CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHH
Q 045686 152 GKTVGLDSIISEVWRCIED----HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILR 227 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~----~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~ 227 (885)
.+++|.++.++.+.+|+.. ...+.+.|+|++|+||||+|+.+++... ++ ++-++.++..... ....++.
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~-----~~-~ielnasd~r~~~-~i~~~i~ 86 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG-----WE-VIELNASDQRTAD-VIERVAG 86 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC-----CC-EEEEcccccccHH-HHHHHHH
Confidence 5689999999999999854 2268899999999999999999998762 22 3334444432222 2223322
Q ss_pred HcCCCccccCCCChhHHHHHHHHHhcCCCeEEEEecCCCccc------cccccccccccccCCCCCEEEEEcCChh-HHh
Q 045686 228 RFEIPDQMWIGKDEDGRANEILSNLRGKKFVLLLDDVWERLD------LSKVGVSDLLDDSSQTGSKIVFTTRSEE-VCG 300 (885)
Q Consensus 228 ~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~------~~~~~~~~~l~~~~~~gs~IivTTR~~~-v~~ 300 (885)
...... .....++-+||+||++.... ...+... ....+..||+|+.+.. ...
T Consensus 87 ~~~~~~----------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~-----l~~~~~~iIli~n~~~~~~~ 145 (482)
T PRK04195 87 EAATSG----------------SLFGARRKLILLDEVDGIHGNEDRGGARAILEL-----IKKAKQPIILTANDPYDPSL 145 (482)
T ss_pred HhhccC----------------cccCCCCeEEEEecCcccccccchhHHHHHHHH-----HHcCCCCEEEeccCccccch
Confidence 211100 00113678999999976432 1111111 1123455666664432 111
Q ss_pred -h-hcccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCchhHHHHHHHHHh
Q 045686 301 -E-MGARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPLALVTIGHAMA 363 (885)
Q Consensus 301 -~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~l~ 363 (885)
. -.....+.+.+++.++....+.+.+.......+ .+....|++.++|-.-.+......+.
T Consensus 146 k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~---~eaL~~Ia~~s~GDlR~ain~Lq~~a 207 (482)
T PRK04195 146 RELRNACLMIEFKRLSTRSIVPVLKRICRKEGIECD---DEALKEIAERSGGDLRSAINDLQAIA 207 (482)
T ss_pred hhHhccceEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 1 123457899999999999999887754443333 34588999999997766554333333
No 56
>PRK08727 hypothetical protein; Validated
Probab=98.48 E-value=2.6e-06 Score=86.69 Aligned_cols=170 Identities=12% Similarity=0.116 Sum_probs=99.0
Q ss_pred CCccchh-HHHHHHHHHhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHHHcC
Q 045686 152 GKTVGLD-SIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILRRFE 230 (885)
Q Consensus 152 ~~~vgr~-~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~ 230 (885)
+.|++.. ..+..+.....+.....+.|+|+.|+|||+|++.+++.... .. ..+.|+++.+ ....+.
T Consensus 19 ~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~--~~-~~~~y~~~~~------~~~~~~---- 85 (233)
T PRK08727 19 DSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQ--AG-RSSAYLPLQA------AAGRLR---- 85 (233)
T ss_pred hhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHH--cC-CcEEEEeHHH------hhhhHH----
Confidence 3455443 33443333333344467999999999999999999988642 22 2455665322 111110
Q ss_pred CCccccCCCChhHHHHHHHHHhcCCCeEEEEecCCCccc---cccccccccccccCCCCCEEEEEcCCh---------hH
Q 045686 231 IPDQMWIGKDEDGRANEILSNLRGKKFVLLLDDVWERLD---LSKVGVSDLLDDSSQTGSKIVFTTRSE---------EV 298 (885)
Q Consensus 231 ~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~---~~~~~~~~~l~~~~~~gs~IivTTR~~---------~v 298 (885)
+ ..+.+ .+.-+||+||+..... +......+. -.....|..||+||+.. ++
T Consensus 86 ------------~----~~~~l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~-n~~~~~~~~vI~ts~~~p~~l~~~~~dL 147 (233)
T PRK08727 86 ------------D----ALEAL-EGRSLVALDGLESIAGQREDEVALFDFH-NRARAAGITLLYTARQMPDGLALVLPDL 147 (233)
T ss_pred ------------H----HHHHH-hcCCEEEEeCcccccCChHHHHHHHHHH-HHHHHcCCeEEEECCCChhhhhhhhHHH
Confidence 0 11111 2345999999964322 111111111 00123467799999853 22
Q ss_pred HhhhcccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCchhHH
Q 045686 299 CGEMGARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPLAL 355 (885)
Q Consensus 299 ~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai 355 (885)
...+.....+++++++.++-..++.+.+.......+ ++...-|++.++|-.-.+
T Consensus 148 ~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~---~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 148 RSRLAQCIRIGLPVLDDVARAAVLRERAQRRGLALD---EAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhCCCCHHHH
Confidence 333444568899999999999999987754333333 345788888888766554
No 57
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.47 E-value=9.2e-08 Score=106.80 Aligned_cols=103 Identities=28% Similarity=0.388 Sum_probs=46.4
Q ss_pred chhHHHHHhhcCCccCCCCchhhhcCC-cccEEecCCCCCCCcCchhhhcccccceeeccCCcccccChhhhccccccEe
Q 045686 537 PQVRTLLARLTMLHTLPIPSRFFDSMD-ALEVLDLSYNLDLNQLPEEIGRLKNLHHLNLSNTSIGCLPTAIKRLIKLKVL 615 (885)
Q Consensus 537 ~~Lr~L~l~~~~l~~~~~~~~~~~~l~-~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L 615 (885)
+.+..|.+.+|.+.. +++. ...+. +|+.|++++| .+..+|..++.+++|+.|++++|++..+|...+.+++|+.|
T Consensus 116 ~~l~~L~l~~n~i~~--i~~~-~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L 191 (394)
T COG4886 116 TNLTSLDLDNNNITD--IPPL-IGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNL 191 (394)
T ss_pred cceeEEecCCccccc--Cccc-cccchhhccccccccc-chhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhhe
Confidence 344444444444444 4332 22221 4444555444 44444444444445555555555444444444444444555
Q ss_pred ecCCcccccccCCcccccCcccceeccccc
Q 045686 616 LLDGIQCHLSIPEGVISSLSSLQVFSCFST 645 (885)
Q Consensus 616 ~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~ 645 (885)
++++|. +..+|.. +..+..|++|.+.+|
T Consensus 192 ~ls~N~-i~~l~~~-~~~~~~L~~l~~~~N 219 (394)
T COG4886 192 DLSGNK-ISDLPPE-IELLSALEELDLSNN 219 (394)
T ss_pred eccCCc-cccCchh-hhhhhhhhhhhhcCC
Confidence 554443 4444443 233334444444444
No 58
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.46 E-value=2.6e-06 Score=86.82 Aligned_cols=167 Identities=10% Similarity=0.134 Sum_probs=99.4
Q ss_pred HHHHHHHHhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHHHcCCCccccCCC
Q 045686 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILRRFEIPDQMWIGK 239 (885)
Q Consensus 160 ~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~ 239 (885)
.+..+.++......+.+.|+|+.|+|||+|++.+++.... .-..+.|+++.....
T Consensus 32 a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~---~~~~v~y~~~~~~~~---------------------- 86 (235)
T PRK08084 32 LLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQ---RGRAVGYVPLDKRAW---------------------- 86 (235)
T ss_pred HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHh---CCCeEEEEEHHHHhh----------------------
Confidence 4445555544455678999999999999999999987642 223455665532100
Q ss_pred ChhHHHHHHHHHhcCCCeEEEEecCCCcc---ccccccccccccccCCCC-CEEEEEcCCh---------hHHhhhcccc
Q 045686 240 DEDGRANEILSNLRGKKFVLLLDDVWERL---DLSKVGVSDLLDDSSQTG-SKIVFTTRSE---------EVCGEMGARR 306 (885)
Q Consensus 240 ~~~~~~~~l~~~l~~k~~LlVLDdv~~~~---~~~~~~~~~~l~~~~~~g-s~IivTTR~~---------~v~~~~~~~~ 306 (885)
...+..+ .+. +--+|++||+.... .|+....... ......| .++|+||+.. ++...+....
T Consensus 87 ~~~~~~~----~~~-~~dlliiDdi~~~~~~~~~~~~lf~l~-n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~ 160 (235)
T PRK08084 87 FVPEVLE----GME-QLSLVCIDNIECIAGDELWEMAIFDLY-NRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQ 160 (235)
T ss_pred hhHHHHH----Hhh-hCCEEEEeChhhhcCCHHHHHHHHHHH-HHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCc
Confidence 0011111 111 12489999996532 2221111111 0011233 4799999754 3345555667
Q ss_pred eeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCchhHHHHHHH
Q 045686 307 RFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPLALVTIGH 360 (885)
Q Consensus 307 ~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~ 360 (885)
.+++.++++++-.+++.+++......-+ +++..-|++.+.|..-++..+-.
T Consensus 161 ~~~l~~~~~~~~~~~l~~~a~~~~~~l~---~~v~~~L~~~~~~d~r~l~~~l~ 211 (235)
T PRK08084 161 IYKLQPLSDEEKLQALQLRARLRGFELP---EDVGRFLLKRLDREMRTLFMTLD 211 (235)
T ss_pred eeeecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhhcCCHHHHHHHHH
Confidence 8999999999999999887754333333 35688889999887666554433
No 59
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.46 E-value=1.2e-07 Score=73.77 Aligned_cols=58 Identities=29% Similarity=0.403 Sum_probs=28.7
Q ss_pred ccceeeccCCcccccChh-hhccccccEeecCCcccccccCCcccccCcccceecccccc
Q 045686 588 NLHHLNLSNTSIGCLPTA-IKRLIKLKVLLLDGIQCHLSIPEGVISSLSSLQVFSCFSTE 646 (885)
Q Consensus 588 ~L~~L~Ls~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~ 646 (885)
+|++|++++|++..+|.. +.++++|++|++++|. +..+|.+.|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCCc
Confidence 344555555555555432 4445555555555443 444444445555555555555443
No 60
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.44 E-value=5.7e-05 Score=87.76 Aligned_cols=203 Identities=16% Similarity=0.093 Sum_probs=115.7
Q ss_pred CCccchhHHHHHHHHHhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCc---cEEEEEEEcCc---ccHHHHHH--
Q 045686 152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDF---DLVIWVKVSRD---ANLEKIQE-- 223 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f---~~~~wv~v~~~---~~~~~~~~-- 223 (885)
++++|++..+..+.+.+.......+.|+|++|+||||+|+.+++..... ..+ ...-|+.+... .+...+..
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~-~~~~~~~~~~fv~i~~~~l~~d~~~i~~~l 232 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKL-KHTPFAEDAPFVEVDGTTLRWDPREVTNPL 232 (615)
T ss_pred HhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhc-cCCcccCCCCeEEEechhccCCHHHHhHHh
Confidence 4689999999998888876667789999999999999999998776322 111 12234444321 12222211
Q ss_pred -------------HHHHHcCCCccc---------------cCCCChhHHHHHHHHHhcCCCeEEEEecCCCc--cccccc
Q 045686 224 -------------SILRRFEIPDQM---------------WIGKDEDGRANEILSNLRGKKFVLLLDDVWER--LDLSKV 273 (885)
Q Consensus 224 -------------~i~~~l~~~~~~---------------~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~--~~~~~~ 273 (885)
..+...|..... ....-....+..+.+.+.++++.++-|+.|.. ..|..+
T Consensus 233 lg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~i 312 (615)
T TIGR02903 233 LGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYI 312 (615)
T ss_pred cCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcccchhh
Confidence 112222221100 00111223566778888888888887666543 234444
Q ss_pred cccccccccCCCCCEEEE--EcCChhH-Hhhhc-ccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhC
Q 045686 274 GVSDLLDDSSQTGSKIVF--TTRSEEV-CGEMG-ARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECR 349 (885)
Q Consensus 274 ~~~~~l~~~~~~gs~Iiv--TTR~~~v-~~~~~-~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~ 349 (885)
...+. ...+..-|+| ||++... ...+. ....+.+.+++.+|.+.++.+.+.......+ .++.+.|++.+.
T Consensus 313 k~~~~---~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~ls---~eal~~L~~ys~ 386 (615)
T TIGR02903 313 KKLFE---EGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVHLA---AGVEELIARYTI 386 (615)
T ss_pred hhhcc---cCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHCCC
Confidence 33222 2233333444 5665432 11111 2246788999999999999998754322222 334566666666
Q ss_pred CchhHHHHHHHH
Q 045686 350 GLPLALVTIGHA 361 (885)
Q Consensus 350 GlPLai~~~~~~ 361 (885)
.-+-|+..++.+
T Consensus 387 ~gRraln~L~~~ 398 (615)
T TIGR02903 387 EGRKAVNILADV 398 (615)
T ss_pred cHHHHHHHHHHH
Confidence 556777666544
No 61
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=1.4e-08 Score=100.05 Aligned_cols=85 Identities=21% Similarity=0.143 Sum_probs=60.8
Q ss_pred CcccEEecCCCCCCC--cCchhhhcccccceeeccCCcc-cccChhhhccccccEeecCCcccccccCC-cccccCcccc
Q 045686 563 DALEVLDLSYNLDLN--QLPEEIGRLKNLHHLNLSNTSI-GCLPTAIKRLIKLKVLLLDGIQCHLSIPE-GVISSLSSLQ 638 (885)
Q Consensus 563 ~~L~~L~Ls~~~~i~--~lp~~i~~L~~L~~L~Ls~~~i-~~lp~~i~~L~~L~~L~l~~~~~l~~lp~-~~i~~L~~L~ 638 (885)
..|++||||+. .|+ .+-.-+..|.+|+.|.|.++++ ..+...+.+-.+|+.|++++|..++.... -++.+++.|+
T Consensus 185 sRlq~lDLS~s-~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 185 SRLQHLDLSNS-VITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhhHHhhcchh-heeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHh
Confidence 35888999888 665 3445567788888888888877 44555677778888888888875554332 2356788888
Q ss_pred eecccccccc
Q 045686 639 VFSCFSTELV 648 (885)
Q Consensus 639 ~L~l~~~~~~ 648 (885)
.|+++.|..+
T Consensus 264 ~LNlsWc~l~ 273 (419)
T KOG2120|consen 264 ELNLSWCFLF 273 (419)
T ss_pred hcCchHhhcc
Confidence 8888877654
No 62
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.43 E-value=1e-06 Score=89.36 Aligned_cols=176 Identities=16% Similarity=0.196 Sum_probs=106.1
Q ss_pred CCccchhHHHH---HHHHHhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHHH
Q 045686 152 GKTVGLDSIIS---EVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILRR 228 (885)
Q Consensus 152 ~~~vgr~~~~~---~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~ 228 (885)
.++||.+..+. -|..++..+..+.+.+||++|+||||||+.+...... .. ..||..|....-..-++.|.++
T Consensus 138 ~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~--~S---yrfvelSAt~a~t~dvR~ife~ 212 (554)
T KOG2028|consen 138 DDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKK--HS---YRFVELSATNAKTNDVRDIFEQ 212 (554)
T ss_pred HHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCC--Cc---eEEEEEeccccchHHHHHHHHH
Confidence 34666655432 3445556688899999999999999999999987642 22 4566666543322333333332
Q ss_pred cCCCccccCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccccccccCCCCCEEEE--EcCChhH---Hhhhc
Q 045686 229 FEIPDQMWIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSDLLDDSSQTGSKIVF--TTRSEEV---CGEMG 303 (885)
Q Consensus 229 l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~~l~~~~~~gs~Iiv--TTR~~~v---~~~~~ 303 (885)
.. -...+.++|.+|++|+|..-... .....++ ...+|.-++| ||.++.. +..+.
T Consensus 213 aq-----------------~~~~l~krkTilFiDEiHRFNks-QQD~fLP---~VE~G~I~lIGATTENPSFqln~aLlS 271 (554)
T KOG2028|consen 213 AQ-----------------NEKSLTKRKTILFIDEIHRFNKS-QQDTFLP---HVENGDITLIGATTENPSFQLNAALLS 271 (554)
T ss_pred HH-----------------HHHhhhcceeEEEeHHhhhhhhh-hhhcccc---eeccCceEEEecccCCCccchhHHHHh
Confidence 21 11234578999999999642111 1111223 4456776666 7877643 23344
Q ss_pred ccceeeccCCChHHHHHHHHHHhc---Cccc---CCcc---ch-HHHHHHHHHHhCCchh
Q 045686 304 ARRRFRVECLSPEAALDLFRYKVG---EDVY---SSHF---EI-SNLAQTVVEECRGLPL 353 (885)
Q Consensus 304 ~~~~~~l~~L~~~~~~~Lf~~~~~---~~~~---~~~~---~~-~~~~~~I~~~c~GlPL 353 (885)
...++.|++|..++...++.+... .... +.+- .+ ..+.+-++..|.|-..
T Consensus 272 RC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 272 RCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred ccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 557899999999999999988542 2111 1111 12 2355667777777654
No 63
>PTZ00202 tuzin; Provisional
Probab=98.43 E-value=3.5e-06 Score=89.23 Aligned_cols=163 Identities=17% Similarity=0.190 Sum_probs=101.6
Q ss_pred cccCCCCccchhHHHHHHHHHhhc---CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHH
Q 045686 147 EERPIGKTVGLDSIISEVWRCIED---HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQE 223 (885)
Q Consensus 147 ~~~~~~~~vgr~~~~~~l~~~L~~---~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~ 223 (885)
.|.+...|+||+++...|...|.+ ...+++.|+|++|+|||||++.+.... . ...++++.. +..+++.
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l----~--~~qL~vNpr---g~eElLr 327 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKE----G--MPAVFVDVR---GTEDTLR 327 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcC----C--ceEEEECCC---CHHHHHH
Confidence 344567899999999999999954 334699999999999999999998654 2 113333322 6799999
Q ss_pred HHHHHcCCCccccCCCChhHHHHHHHHHh-----c-CCCeEEEEecCCCccccccc---cccccccccCCCCCEEEEEcC
Q 045686 224 SILRRFEIPDQMWIGKDEDGRANEILSNL-----R-GKKFVLLLDDVWERLDLSKV---GVSDLLDDSSQTGSKIVFTTR 294 (885)
Q Consensus 224 ~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~-~k~~LlVLDdv~~~~~~~~~---~~~~~l~~~~~~gs~IivTTR 294 (885)
.++.+||.+.. ....++...|.+.+ . +++.+||+- ..+...+..+ ...+. +..+-|.|++---
T Consensus 328 ~LL~ALGV~p~----~~k~dLLrqIqeaLl~~~~e~GrtPVLII~-lreg~~l~rvyne~v~la---~drr~ch~v~evp 399 (550)
T PTZ00202 328 SVVKALGVPNV----EACGDLLDFISEACRRAKKMNGETPLLVLK-LREGSSLQRVYNEVVALA---CDRRLCHVVIEVP 399 (550)
T ss_pred HHHHHcCCCCc----ccHHHHHHHHHHHHHHHHHhCCCCEEEEEE-ecCCCcHHHHHHHHHHHH---ccchhheeeeeeh
Confidence 99999998532 22233334433333 2 566666654 2222222211 11122 4455677877544
Q ss_pred ChhHHhh---hcccceeeccCCChHHHHHHHHHHh
Q 045686 295 SEEVCGE---MGARRRFRVECLSPEAALDLFRYKV 326 (885)
Q Consensus 295 ~~~v~~~---~~~~~~~~l~~L~~~~~~~Lf~~~~ 326 (885)
-+.+.-. +.--..|.+..++.++|.+.-.+..
T Consensus 400 leslt~~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 400 LESLTIANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred HhhcchhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 3332111 1122468899999999998887654
No 64
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=1e-08 Score=100.93 Aligned_cols=58 Identities=31% Similarity=0.357 Sum_probs=33.9
Q ss_pred ccceeeccCCcc--cccChhhhccccccEeecCCcccccccCCcccccCcccceecccccc
Q 045686 588 NLHHLNLSNTSI--GCLPTAIKRLIKLKVLLLDGIQCHLSIPEGVISSLSSLQVFSCFSTE 646 (885)
Q Consensus 588 ~L~~L~Ls~~~i--~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~ 646 (885)
.|++||||++.| ..+-.-+..+.+|+.|.+.|+..-..+-.. +.+=.+|+.|++++|+
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~-iAkN~~L~~lnlsm~s 245 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNT-IAKNSNLVRLNLSMCS 245 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHH-Hhccccceeecccccc
Confidence 367777777665 334444566677777777766533333333 5555666666666654
No 65
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.40 E-value=1.5e-06 Score=82.05 Aligned_cols=126 Identities=17% Similarity=0.092 Sum_probs=73.2
Q ss_pred cchhHHHHHHHHHhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHHHcCCCcc
Q 045686 155 VGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILRRFEIPDQ 234 (885)
Q Consensus 155 vgr~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~ 234 (885)
+|++..++.+...+.....+.+.|+|++|+||||+++.+++... ..-..++++...+..........+...
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~------ 71 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELF---RPGAPFLYLNASDLLEGLVVAELFGHF------ 71 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhh---cCCCCeEEEehhhhhhhhHHHHHhhhh------
Confidence 47888999999998777778999999999999999999999873 112335666554433221111110000
Q ss_pred ccCCCChhHHHHHHHHHhcCCCeEEEEecCCCcc--cccccccccccccc---CCCCCEEEEEcCChh
Q 045686 235 MWIGKDEDGRANEILSNLRGKKFVLLLDDVWERL--DLSKVGVSDLLDDS---SQTGSKIVFTTRSEE 297 (885)
Q Consensus 235 ~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~--~~~~~~~~~~l~~~---~~~gs~IivTTR~~~ 297 (885)
............++.++|+||++... ....+...+..... ...+..||+||....
T Consensus 72 --------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 --------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred --------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 00111122334567899999998531 11111111100001 135788888888653
No 66
>PF13173 AAA_14: AAA domain
Probab=98.39 E-value=8.4e-07 Score=81.19 Aligned_cols=120 Identities=22% Similarity=0.237 Sum_probs=78.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHHHcCCCccccCCCChhHHHHHHHHHh
Q 045686 173 EKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILRRFEIPDQMWIGKDEDGRANEILSNL 252 (885)
Q Consensus 173 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 252 (885)
.+++.|.|+-|+||||++++++.+.. ....++|++..+........ .+ ....+.+..
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~----~~~~~~yi~~~~~~~~~~~~------------------~~-~~~~~~~~~ 58 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL----PPENILYINFDDPRDRRLAD------------------PD-LLEYFLELI 58 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc----ccccceeeccCCHHHHHHhh------------------hh-hHHHHHHhh
Confidence 57899999999999999999998763 22346666655432211000 00 222333333
Q ss_pred cCCCeEEEEecCCCccccccccccccccccCCCCCEEEEEcCChhHHhh-----h-cccceeeccCCChHHH
Q 045686 253 RGKKFVLLLDDVWERLDLSKVGVSDLLDDSSQTGSKIVFTTRSEEVCGE-----M-GARRRFRVECLSPEAA 318 (885)
Q Consensus 253 ~~k~~LlVLDdv~~~~~~~~~~~~~~l~~~~~~gs~IivTTR~~~v~~~-----~-~~~~~~~l~~L~~~~~ 318 (885)
..++.++++|++....+|......+. +..++.+|++|+........ + +....++|.||+..|.
T Consensus 59 ~~~~~~i~iDEiq~~~~~~~~lk~l~---d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 59 KPGKKYIFIDEIQYLPDWEDALKFLV---DNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred ccCCcEEEEehhhhhccHHHHHHHHH---HhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 44788999999988877776654444 44456899999998766532 1 1224678999987763
No 67
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.38 E-value=6.6e-07 Score=90.85 Aligned_cols=93 Identities=19% Similarity=0.222 Sum_probs=63.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCc--ccHHHHHHHH-----HHHcCCCccccCCCChhH
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRD--ANLEKIQESI-----LRRFEIPDQMWIGKDEDG 243 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~--~~~~~~~~~i-----~~~l~~~~~~~~~~~~~~ 243 (885)
..+..++|+|++|+|||||++.+++... ..+|+.++|+.+.+. .++.+++..+ +..++.+... .......
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l~--~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~-~~~~~~~ 90 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANAIT--KNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPER-HVQVAEM 90 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccc--cccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHH-HHHHHHH
Confidence 5678999999999999999999999885 348999999998776 7899999988 3333321100 0000011
Q ss_pred HHHHHHHH-hcCCCeEEEEecCCC
Q 045686 244 RANEILSN-LRGKKFVLLLDDVWE 266 (885)
Q Consensus 244 ~~~~l~~~-l~~k~~LlVLDdv~~ 266 (885)
........ -.++++++++|++..
T Consensus 91 ~~~~a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 91 VLEKAKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHHHHHCCCCEEEEEECHHH
Confidence 11112211 247899999999964
No 68
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.38 E-value=6.7e-08 Score=97.87 Aligned_cols=247 Identities=20% Similarity=0.169 Sum_probs=123.0
Q ss_pred hhcCCcccEEecCCCCCCC-c----CchhhhcccccceeeccCC---c-ccccChh-------hhccccccEeecCCccc
Q 045686 559 FDSMDALEVLDLSYNLDLN-Q----LPEEIGRLKNLHHLNLSNT---S-IGCLPTA-------IKRLIKLKVLLLDGIQC 622 (885)
Q Consensus 559 ~~~l~~L~~L~Ls~~~~i~-~----lp~~i~~L~~L~~L~Ls~~---~-i~~lp~~-------i~~L~~L~~L~l~~~~~ 622 (885)
...+..+.+|+||+| .+. . +...+.+.++|+..++|+- + ..++|+. +-.+++|++|+||+|-.
T Consensus 26 ~~~~~s~~~l~lsgn-t~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGN-TFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred hcccCceEEEeccCC-chhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 445677788888888 443 2 3344556667777777753 1 2455544 33556888888888864
Q ss_pred ccccCCc---ccccCcccceecccccccccccCcccccccchh-hhcCccCCcceeEEEechhhHHhhhCCCccccccee
Q 045686 623 HLSIPEG---VISSLSSLQVFSCFSTELVELIDPLFNETAILD-ELNCLEHLNDLSLTLFSTEAVDKLLNSPKLQRCIRR 698 (885)
Q Consensus 623 l~~lp~~---~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~-~l~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~ 698 (885)
-...+.. .+++++.|++|.+.+|.+... ....+. .|..|.. .+.....+.|+.
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~------ag~~l~~al~~l~~-----------------~kk~~~~~~Lrv 161 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPE------AGGRLGRALFELAV-----------------NKKAASKPKLRV 161 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCCCChh------HHHHHHHHHHHHHH-----------------HhccCCCcceEE
Confidence 3333322 256788888888888866421 000100 0100000 000111224555
Q ss_pred EEeccccccccc------hhhhhhccceEEeeccCccceeecCCCCCccccccccEEeeccccCCccc------cccccC
Q 045686 699 LTIESSELLSLE------LGLMLSHLEILRIKCGFMKRLNIDQGLNNRPSFSALRRLSIILCPDIQNL------TCLVHV 766 (885)
Q Consensus 699 L~l~~~~~~~~~------l~~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~l------~~l~~l 766 (885)
+....|....-. .....+.|+.+.+..|.+..-...........+++|+.|+|.+|. ++.- ..+..+
T Consensus 162 ~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNt-ft~egs~~LakaL~s~ 240 (382)
T KOG1909|consen 162 FICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNT-FTLEGSVALAKALSSW 240 (382)
T ss_pred EEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccch-hhhHHHHHHHHHhccc
Confidence 555555422111 111125666666655554322211111122346777777777763 3221 234566
Q ss_pred CCccEEeEeccCCchhhhcccccCCCcccccccccceeccccccccccc----cCCccCCCCccEEeeccC
Q 045686 767 PSLQFLSLSNCHSLEEIVGTYASGSSESRNYFSNLMAVDLDGLPTLRSI----CSGTVAFPSLQTLSITGC 833 (885)
Q Consensus 767 ~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~----~~~~~~~p~L~~L~i~~C 833 (885)
|+|+.|++++|. +++-.... ........+|+|+.|.+.+|..-..- .......|.|..|++++|
T Consensus 241 ~~L~El~l~dcl-l~~~Ga~a--~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 241 PHLRELNLGDCL-LENEGAIA--FVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGN 308 (382)
T ss_pred chheeecccccc-cccccHHH--HHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcc
Confidence 677777777773 32221100 00011234677777777776433321 112334677777777775
No 69
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.37 E-value=8.9e-08 Score=106.97 Aligned_cols=195 Identities=20% Similarity=0.230 Sum_probs=144.0
Q ss_pred hcCCcccEEecCCCCCCCcCchhhhcccccceeeccCCcccccChhhhccccccEeecCCcccccccCCcccccCcccce
Q 045686 560 DSMDALEVLDLSYNLDLNQLPEEIGRLKNLHHLNLSNTSIGCLPTAIKRLIKLKVLLLDGIQCHLSIPEGVISSLSSLQV 639 (885)
Q Consensus 560 ~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~ 639 (885)
..+..++.+++..| .+...-..++.+.+|..|++.+|+|..+...+..+++|++|++++|. +..+.. +..++.|+.
T Consensus 69 ~~l~~l~~l~l~~n-~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~~--l~~l~~L~~ 144 (414)
T KOG0531|consen 69 ESLTSLKELNLRQN-LIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK-ITKLEG--LSTLTLLKE 144 (414)
T ss_pred HHhHhHHhhccchh-hhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccc-cccccc--hhhccchhh
Confidence 45677788889988 78876666889999999999999999998668999999999999997 777765 789999999
Q ss_pred ecccccccccccCcccccccchhhhcCccCCcceeEEEechhhHHhhhCCCcccccceeEEeccccccccchhhhhhccc
Q 045686 640 FSCFSTELVELIDPLFNETAILDELNCLEHLNDLSLTLFSTEAVDKLLNSPKLQRCIRRLTIESSELLSLELGLMLSHLE 719 (885)
Q Consensus 640 L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~L~ 719 (885)
|++.+|.+. .+..+..+..|+.+++..+....+.... ......++.+.+.+|.+..+.....+..+.
T Consensus 145 L~l~~N~i~-----------~~~~~~~l~~L~~l~l~~n~i~~ie~~~--~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~ 211 (414)
T KOG0531|consen 145 LNLSGNLIS-----------DISGLESLKSLKLLDLSYNRIVDIENDE--LSELISLEELDLGGNSIREIEGLDLLKKLV 211 (414)
T ss_pred heeccCcch-----------hccCCccchhhhcccCCcchhhhhhhhh--hhhccchHHHhccCCchhcccchHHHHHHH
Confidence 999999876 4555666788888888877766665521 112236888888888855555333335565
Q ss_pred eEEeeccCccceeecCCCCCcccccc--ccEEeeccccCCccc-cccccCCCccEEeEeccC
Q 045686 720 ILRIKCGFMKRLNIDQGLNNRPSFSA--LRRLSIILCPDIQNL-TCLVHVPSLQFLSLSNCH 778 (885)
Q Consensus 720 ~L~l~~~~l~~l~~~~~~~~~~~l~~--L~~L~L~~c~~l~~l-~~l~~l~~L~~L~L~~~~ 778 (885)
.+++..|.+..+.... .+.. |+.+++.++ .+... ..+..++.+..|++.++.
T Consensus 212 ~~~l~~n~i~~~~~l~------~~~~~~L~~l~l~~n-~i~~~~~~~~~~~~l~~l~~~~n~ 266 (414)
T KOG0531|consen 212 LLSLLDNKISKLEGLN------ELVMLHLRELYLSGN-RISRSPEGLENLKNLPVLDLSSNR 266 (414)
T ss_pred HhhcccccceeccCcc------cchhHHHHHHhcccC-ccccccccccccccccccchhhcc
Confidence 6666666665543221 1333 899999998 46555 567778888889888874
No 70
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.35 E-value=5.8e-06 Score=90.22 Aligned_cols=196 Identities=11% Similarity=0.091 Sum_probs=107.6
Q ss_pred CCccchhHHHHHHHHHhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCcc-EEEEEEEcCcccH-HHHHH---HHH
Q 045686 152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFD-LVIWVKVSRDANL-EKIQE---SIL 226 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~-~~~wv~v~~~~~~-~~~~~---~i~ 226 (885)
.+++|++..++.+.+++..+..+.+.++|++|+||||+|+.+++.... ..+. ..+.+++++-... ..... ...
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 92 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYG--DPWENNFTEFNVADFFDQGKKYLVEDPRFA 92 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcC--cccccceEEechhhhhhcchhhhhcCcchh
Confidence 568999999999999998776667889999999999999999887632 2221 2344444321100 00000 000
Q ss_pred HHcCCCccccCCCChhHHHHHHH-HH---h--cCCCeEEEEecCCCccc--cccccccccccccCCCCCEEEEEcCCh-h
Q 045686 227 RRFEIPDQMWIGKDEDGRANEIL-SN---L--RGKKFVLLLDDVWERLD--LSKVGVSDLLDDSSQTGSKIVFTTRSE-E 297 (885)
Q Consensus 227 ~~l~~~~~~~~~~~~~~~~~~l~-~~---l--~~k~~LlVLDdv~~~~~--~~~~~~~~~l~~~~~~gs~IivTTR~~-~ 297 (885)
..++... . ......+....+. .. . .+.+-+||+||+..... ...+...+. .....+++|+||... .
T Consensus 93 ~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le---~~~~~~~~Il~~~~~~~ 167 (337)
T PRK12402 93 HFLGTDK-R-IRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIME---QYSRTCRFIIATRQPSK 167 (337)
T ss_pred hhhhhhh-h-hccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHH---hccCCCeEEEEeCChhh
Confidence 0000000 0 0001111122211 11 1 23455899999964421 111111111 223356788777543 2
Q ss_pred HHhhh-cccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCchhHHHH
Q 045686 298 VCGEM-GARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPLALVT 357 (885)
Q Consensus 298 v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~ 357 (885)
+...+ .....+.+.+++.++...++.+.+.......+ .+..+.+++.++|.+-.+..
T Consensus 168 ~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~---~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 168 LIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYD---DDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred CchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 22222 12356888999999999999887754333222 34578889999887655443
No 71
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.35 E-value=9.9e-07 Score=81.35 Aligned_cols=120 Identities=18% Similarity=0.309 Sum_probs=78.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhccC--CCCccEEEEEEEcCcccHHHHHHHHHHHcCCCccccCCCChhHHHHHHH
Q 045686 172 NEKVIGLYGMGGVGKTTLLKKLNNKFRDT--GHDFDLVIWVKVSRDANLEKIQESILRRFEIPDQMWIGKDEDGRANEIL 249 (885)
Q Consensus 172 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~--~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 249 (885)
+.+++.|+|.+|+|||++++.+....... ...-..++|+.+....+...+...|+.+++..... ..+...+...+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~l~~~~~ 80 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS--RQTSDELRSLLI 80 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS--TS-HHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc--cCCHHHHHHHHH
Confidence 45789999999999999999999886311 00133567999888879999999999999987532 346777778888
Q ss_pred HHhcCCCe-EEEEecCCCccccccccccccccccCCCCCEEEEEcCC
Q 045686 250 SNLRGKKF-VLLLDDVWERLDLSKVGVSDLLDDSSQTGSKIVFTTRS 295 (885)
Q Consensus 250 ~~l~~k~~-LlVLDdv~~~~~~~~~~~~~~l~~~~~~gs~IivTTR~ 295 (885)
+.+...+. +||+||+........+.....+ ....+.+||++.+.
T Consensus 81 ~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l--~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 81 DALDRRRVVLLVIDEADHLFSDEFLEFLRSL--LNESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHCTEEEEEEETTHHHHTHHHHHHHHHH--TCSCBEEEEEEESS
T ss_pred HHHHhcCCeEEEEeChHhcCCHHHHHHHHHH--HhCCCCeEEEEECh
Confidence 88876655 9999999763111111111111 23556777777665
No 72
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.34 E-value=3.5e-07 Score=71.25 Aligned_cols=58 Identities=36% Similarity=0.543 Sum_probs=45.8
Q ss_pred CcccEEecCCCCCCCcCch-hhhcccccceeeccCCcccccChh-hhccccccEeecCCcc
Q 045686 563 DALEVLDLSYNLDLNQLPE-EIGRLKNLHHLNLSNTSIGCLPTA-IKRLIKLKVLLLDGIQ 621 (885)
Q Consensus 563 ~~L~~L~Ls~~~~i~~lp~-~i~~L~~L~~L~Ls~~~i~~lp~~-i~~L~~L~~L~l~~~~ 621 (885)
++|++|++++| .++.+|. .+.++++|++|++++|.+..+|.. |.++++|++|++++|+
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 46788888888 7777774 567788888888888888877764 7888888888888875
No 73
>PRK09087 hypothetical protein; Validated
Probab=98.32 E-value=7.7e-06 Score=82.46 Aligned_cols=144 Identities=15% Similarity=0.090 Sum_probs=90.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHHHcCCCccccCCCChhHHHHHHHHH
Q 045686 172 NEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILRRFEIPDQMWIGKDEDGRANEILSN 251 (885)
Q Consensus 172 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 251 (885)
..+.+.|+|+.|+|||+|++.++.... ..|++.. ....++...
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~~--------~~~i~~~------~~~~~~~~~----------------------- 85 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKSD--------ALLIHPN------EIGSDAANA----------------------- 85 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhcC--------CEEecHH------HcchHHHHh-----------------------
Confidence 456799999999999999999887642 1133221 111111111
Q ss_pred hcCCCeEEEEecCCCcc-ccccccccccccccCCCCCEEEEEcCC---------hhHHhhhcccceeeccCCChHHHHHH
Q 045686 252 LRGKKFVLLLDDVWERL-DLSKVGVSDLLDDSSQTGSKIVFTTRS---------EEVCGEMGARRRFRVECLSPEAALDL 321 (885)
Q Consensus 252 l~~k~~LlVLDdv~~~~-~~~~~~~~~~l~~~~~~gs~IivTTR~---------~~v~~~~~~~~~~~l~~L~~~~~~~L 321 (885)
+.+ -+|++||+.... +-.++...+. .....|..||+|++. +++...+.....+++++++.++-.++
T Consensus 86 ~~~--~~l~iDDi~~~~~~~~~lf~l~n--~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~i 161 (226)
T PRK09087 86 AAE--GPVLIEDIDAGGFDETGLFHLIN--SVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQV 161 (226)
T ss_pred hhc--CeEEEECCCCCCCCHHHHHHHHH--HHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHH
Confidence 111 278889996431 1111111111 023447789999873 33445556668899999999999999
Q ss_pred HHHHhcCcccCCccchHHHHHHHHHHhCCchhHHHHHH
Q 045686 322 FRYKVGEDVYSSHFEISNLAQTVVEECRGLPLALVTIG 359 (885)
Q Consensus 322 f~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~ 359 (885)
+++++.......+ +++..-|++.+.|..-++..+-
T Consensus 162 L~~~~~~~~~~l~---~ev~~~La~~~~r~~~~l~~~l 196 (226)
T PRK09087 162 IFKLFADRQLYVD---PHVVYYLVSRMERSLFAAQTIV 196 (226)
T ss_pred HHHHHHHcCCCCC---HHHHHHHHHHhhhhHHHHHHHH
Confidence 9998865433333 3568888888888777766433
No 74
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.32 E-value=8.8e-06 Score=92.72 Aligned_cols=192 Identities=13% Similarity=0.152 Sum_probs=108.8
Q ss_pred CCccchhHHHHHHHHHhhcCCC-eEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHHH--
Q 045686 152 GKTVGLDSIISEVWRCIEDHNE-KVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILRR-- 228 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~-- 228 (885)
.++||.+..++.|.+++..++. ..+.++|..|+||||+|+.+.+..... ..++. ..+..-.....|...
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe-~~~~~-------~PCG~C~sCr~I~~G~h 87 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCE-TGVTS-------QPCGVCRACREIDEGRF 87 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCc-cCCCC-------CCCcccHHHHHHhcCCC
Confidence 4689999999999999977654 466799999999999999998876321 11100 000100111111100
Q ss_pred ---cCCCccccCCCChhHHHHHHHHH----hcCCCeEEEEecCCCccc--cccccccccccccCCCCCEEEEEcCChh-H
Q 045686 229 ---FEIPDQMWIGKDEDGRANEILSN----LRGKKFVLLLDDVWERLD--LSKVGVSDLLDDSSQTGSKIVFTTRSEE-V 298 (885)
Q Consensus 229 ---l~~~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVLDdv~~~~~--~~~~~~~~~l~~~~~~gs~IivTTR~~~-v 298 (885)
+.+.. ......++....+... ..++.-++|+|++..... +..+...+- ....+.++|+||++.+ +
T Consensus 88 ~DviEIDA--as~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLE---EPP~~v~FILaTtd~~KI 162 (830)
T PRK07003 88 VDYVEMDA--ASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLE---EPPPHVKFILATTDPQKI 162 (830)
T ss_pred ceEEEecc--cccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHH---hcCCCeEEEEEECChhhc
Confidence 00000 0111222222222211 124556899999976532 222222211 2334677777776643 3
Q ss_pred Hhh-hcccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCchh-HHHHHH
Q 045686 299 CGE-MGARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPL-ALVTIG 359 (885)
Q Consensus 299 ~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPL-ai~~~~ 359 (885)
... .+-...|.+..++.++..+.+.+.+.......+ .+....|++.++|..- |+..+-
T Consensus 163 p~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id---~eAL~lIA~~A~GsmRdALsLLd 222 (830)
T PRK07003 163 PVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFE---PQALRLLARAAQGSMRDALSLTD 222 (830)
T ss_pred cchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHH
Confidence 211 122367899999999999999988865443322 3457889999988654 554433
No 75
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.32 E-value=6.1e-06 Score=84.12 Aligned_cols=175 Identities=13% Similarity=0.195 Sum_probs=98.3
Q ss_pred CCcc-chhH-HHHHHHHHhh-cCCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHHH
Q 045686 152 GKTV-GLDS-IISEVWRCIE-DHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILRR 228 (885)
Q Consensus 152 ~~~v-gr~~-~~~~l~~~L~-~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~ 228 (885)
++|+ |... ....+.++.. ....+.+.|+|+.|+|||+||+.+++.... ... ...+++...... .
T Consensus 18 d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~--~~~-~~~~i~~~~~~~------~---- 84 (227)
T PRK08903 18 DNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASY--GGR-NARYLDAASPLL------A---- 84 (227)
T ss_pred cccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHh--CCC-cEEEEehHHhHH------H----
Confidence 3445 5433 3344444433 244578899999999999999999987632 222 234444332110 0
Q ss_pred cCCCccccCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccccccccCCCCC-EEEEEcCChhHHh-------
Q 045686 229 FEIPDQMWIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSDLLDDSSQTGS-KIVFTTRSEEVCG------- 300 (885)
Q Consensus 229 l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~~l~~~~~~gs-~IivTTR~~~v~~------- 300 (885)
+ . .....-+||+||+........-.....+......+. .||+|++......
T Consensus 85 ~--------------------~-~~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~ 143 (227)
T PRK08903 85 F--------------------D-FDPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLR 143 (227)
T ss_pred H--------------------h-hcccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHH
Confidence 0 0 112345789999965432221111111111122344 4666666433211
Q ss_pred -hhcccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCchhHHHHHHHHHh
Q 045686 301 -EMGARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPLALVTIGHAMA 363 (885)
Q Consensus 301 -~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~l~ 363 (885)
.+.....+.+.++++++-..++.+.+.......+ ++..+.+++.+.|.+..+..+-..+.
T Consensus 144 sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~---~~al~~L~~~~~gn~~~l~~~l~~l~ 204 (227)
T PRK08903 144 TRLGWGLVYELKPLSDADKIAALKAAAAERGLQLA---DEVPDYLLTHFRRDMPSLMALLDALD 204 (227)
T ss_pred HHHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 2233468899999998877777765533222222 34678888899999998877665553
No 76
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.32 E-value=5.7e-07 Score=94.16 Aligned_cols=296 Identities=18% Similarity=0.180 Sum_probs=186.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHHHcCCCccccCCCChhHHHHHHHHH
Q 045686 172 NEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILRRFEIPDQMWIGKDEDGRANEILSN 251 (885)
Q Consensus 172 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 251 (885)
..+.+.++|.|||||||++-.+.. .+ ..+-+.+.++....-.+...+.-.+...++.+. ...+.....+...
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~--~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~-----~~g~~~~~~~~~~ 84 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AA--SEYADGVAFVDLAPITDPALVFPTLAGALGLHV-----QPGDSAVDTLVRR 84 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-Hh--hhcccceeeeeccccCchhHhHHHHHhhccccc-----ccchHHHHHHHHH
Confidence 458899999999999999999988 42 245556777777777777777777777788754 2334445566777
Q ss_pred hcCCCeEEEEecCCCccccccccc-cccccccCCCCCEEEEEcCChhHHhhhcccceeeccCCChH-HHHHHHHHHhcCc
Q 045686 252 LRGKKFVLLLDDVWERLDLSKVGV-SDLLDDSSQTGSKIVFTTRSEEVCGEMGARRRFRVECLSPE-AALDLFRYKVGED 329 (885)
Q Consensus 252 l~~k~~LlVLDdv~~~~~~~~~~~-~~~l~~~~~~gs~IivTTR~~~v~~~~~~~~~~~l~~L~~~-~~~~Lf~~~~~~~ 329 (885)
..++|.++|+||.....+-..-.+ .+. .+...-+|+.|+|..-. ........+.+|+.. ++.++|...+...
T Consensus 85 ~~~rr~llvldncehl~~~~a~~i~all---~~~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~ 158 (414)
T COG3903 85 IGDRRALLVLDNCEHLLDACAALIVALL---GACPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLV 158 (414)
T ss_pred HhhhhHHHHhcCcHHHHHHHHHHHHHHH---ccchhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHh
Confidence 888999999999865432211111 111 23334567888887532 234456777887754 7889987766322
Q ss_pred cc--CCccchHHHHHHHHHHhCCchhHHHHHHHHHhcCCChhhHHHHH----HHHhcCcccccCC-CCcccccccccccc
Q 045686 330 VY--SSHFEISNLAQTVVEECRGLPLALVTIGHAMASRMGPTQWRYAV----GELQRYPFKFAGM-GNSVFPILRFSYDS 402 (885)
Q Consensus 330 ~~--~~~~~~~~~~~~I~~~c~GlPLai~~~~~~l~~~~~~~~w~~~~----~~l~~~~~~~~~~-~~~~~~~l~~sy~~ 402 (885)
.. --.........+|.++..|.|++|..+++..+. ....+-...+ ..+... ...... .......+.+||.-
T Consensus 159 ~~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~s-l~~~~i~~~L~drf~ll~~~-~r~a~~~~qtl~asl~ws~~l 236 (414)
T COG3903 159 ALSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRS-LSPDEIAAGLRDRFRLLTGG-ARLAVLRQQTLRASLDWSYAL 236 (414)
T ss_pred ccceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHh-cCHHHHHHHHhhHHHHHhcc-cccchhHHHhccchhhhhhHh
Confidence 11 111223456899999999999999999988877 3332222211 112221 111000 12568899999999
Q ss_pred cccchhhhHHhhhccCCCCceecHHHHHHHHHhcCcCCCCCCCChHHHHHHHHHHhcccccCC-CCCCcEEEehhHHHHH
Q 045686 403 LREDIFKTCFLYCALFPEEHNITKDELIQLWIGEGFLNGISPRDQGEYIIESLKLACLLERGE-NSEDSVKMHNLIRDMA 481 (885)
Q Consensus 403 L~~~~~k~cfl~~s~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~l~~L~~~~ll~~~~-~~~~~~~mHdlv~~~a 481 (885)
|... .+--|-.++.|...+... ...|.+-|-... .+.-.....+..+++.+++...+ .....|+.-+-+|.++
T Consensus 237 Ltgw-e~~~~~rLa~~~g~f~~~----l~~~~a~g~~~~-~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~Ya 310 (414)
T COG3903 237 LTGW-ERALFGRLAVFVGGFDLG----LALAVAAGADVD-VPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYA 310 (414)
T ss_pred hhhH-HHHHhcchhhhhhhhccc----HHHHHhcCCccc-cchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHH
Confidence 9885 788899999998877544 233444442110 12233444566677777775433 1144566777778888
Q ss_pred HHHhhcCC
Q 045686 482 LELASEND 489 (885)
Q Consensus 482 ~~~~~~~~ 489 (885)
.....+..
T Consensus 311 laeL~r~~ 318 (414)
T COG3903 311 LAELHRSG 318 (414)
T ss_pred HHHHHhhh
Confidence 77666543
No 77
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.31 E-value=6.2e-06 Score=95.86 Aligned_cols=193 Identities=12% Similarity=0.115 Sum_probs=106.2
Q ss_pred CCccchhHHHHHHHHHhhcCCCe-EEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHHHcC
Q 045686 152 GKTVGLDSIISEVWRCIEDHNEK-VIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILRRFE 230 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~ 230 (885)
.++||.+..++.|.+++..++.. .+.++|+.|+||||+|+.+++..... ...... .+... .....|.....
T Consensus 16 ddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce-~~~~~~---pCg~C----~sC~~i~~g~~ 87 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCE-QGVTAT---PCGVC----SSCVEIAQGRF 87 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCc-cCCCCC---CCCCc----hHHHHHhcCCC
Confidence 56899999999999999776655 45899999999999999999876321 111000 00000 00001110000
Q ss_pred ---CCccccCCCChhH---HHHHHH-HHhcCCCeEEEEecCCCcc--ccccccccccccccCCCCCEEEEEcCC-hhHHh
Q 045686 231 ---IPDQMWIGKDEDG---RANEIL-SNLRGKKFVLLLDDVWERL--DLSKVGVSDLLDDSSQTGSKIVFTTRS-EEVCG 300 (885)
Q Consensus 231 ---~~~~~~~~~~~~~---~~~~l~-~~l~~k~~LlVLDdv~~~~--~~~~~~~~~~l~~~~~~gs~IivTTR~-~~v~~ 300 (885)
...+.......++ +...+. .-..+++-++|+|++.... ....+...+- ......++|++|.+ ..+..
T Consensus 88 ~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLE---EPP~~vrFILaTTe~~kLl~ 164 (944)
T PRK14949 88 VDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLE---EPPEHVKFLLATTDPQKLPV 164 (944)
T ss_pred ceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHh---ccCCCeEEEEECCCchhchH
Confidence 0000000011111 111111 1123677899999997542 1222211111 22334566655544 44432
Q ss_pred h-hcccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCchhHHHHH
Q 045686 301 E-MGARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPLALVTI 358 (885)
Q Consensus 301 ~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~ 358 (885)
. ......|++.+++.++..+.+.+.+........ .+....|++.++|.|--+..+
T Consensus 165 TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~~e---deAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 165 TVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLPFE---AEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred HHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 2 222368999999999999999887754332222 345788999999988644433
No 78
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.30 E-value=1.1e-05 Score=87.36 Aligned_cols=179 Identities=14% Similarity=0.199 Sum_probs=104.0
Q ss_pred CCccchhHHHHHHHHHhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEE--cCcccHHHHHHHHHHHc
Q 045686 152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKV--SRDANLEKIQESILRRF 229 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v--~~~~~~~~~~~~i~~~l 229 (885)
.+++|+++.++.+..++.....+.+.++|++|+||||+|+.+++.... ..+.. .++.+ +.......+. +.+..+
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~--~~~~~-~~i~~~~~~~~~~~~~~-~~i~~~ 92 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYG--EDWRE-NFLELNASDERGIDVIR-NKIKEF 92 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcC--Ccccc-ceEEeccccccchHHHH-HHHHHH
Confidence 568999999999999998766677899999999999999999988632 22211 12222 2221111111 111111
Q ss_pred CCCccccCCCChhHHHHHHHHHhcCCCeEEEEecCCCccc--cccccccccccccCCCCCEEEEEcCCh-hHHhhh-ccc
Q 045686 230 EIPDQMWIGKDEDGRANEILSNLRGKKFVLLLDDVWERLD--LSKVGVSDLLDDSSQTGSKIVFTTRSE-EVCGEM-GAR 305 (885)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~--~~~~~~~~~l~~~~~~gs~IivTTR~~-~v~~~~-~~~ 305 (885)
....+ .....+-++++|++..... ...+...+. .....+.+|+++... .+.... ...
T Consensus 93 ~~~~~----------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le---~~~~~~~lIl~~~~~~~l~~~l~sr~ 153 (319)
T PRK00440 93 ARTAP----------------VGGAPFKIIFLDEADNLTSDAQQALRRTME---MYSQNTRFILSCNYSSKIIDPIQSRC 153 (319)
T ss_pred HhcCC----------------CCCCCceEEEEeCcccCCHHHHHHHHHHHh---cCCCCCeEEEEeCCccccchhHHHHh
Confidence 00000 0012356899999864321 111111111 223346677766432 221111 123
Q ss_pred ceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCchhHHH
Q 045686 306 RRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPLALV 356 (885)
Q Consensus 306 ~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~ 356 (885)
..+.+.++++++....+.+.+......-+ .+....+++.++|.+.-+.
T Consensus 154 ~~~~~~~l~~~ei~~~l~~~~~~~~~~i~---~~al~~l~~~~~gd~r~~~ 201 (319)
T PRK00440 154 AVFRFSPLKKEAVAERLRYIAENEGIEIT---DDALEAIYYVSEGDMRKAI 201 (319)
T ss_pred heeeeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 46899999999999999888754433222 3457889999999876543
No 79
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.30 E-value=8.9e-06 Score=91.59 Aligned_cols=191 Identities=14% Similarity=0.112 Sum_probs=106.3
Q ss_pred CCccchhHHHHHHHHHhhcCCC-eEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHHHcC
Q 045686 152 GKTVGLDSIISEVWRCIEDHNE-KVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILRRFE 230 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~ 230 (885)
.+++|.+..++.|.+++..+.. ..+.++|++|+||||+|+.+++..... +.+...+|.|.+.. .+....+.-+..++
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~-~~~~~~cg~C~sc~-~i~~~~h~dv~el~ 91 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCS-GEDPKPCGECESCL-AVRRGAHPDVLEID 91 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc-CCCCCCCCcChhhH-HHhcCCCCceEEec
Confidence 4689999999999999877655 456899999999999999998876421 11222223221110 00000000000000
Q ss_pred CCccccCCCChhHHHHHHHHH-----hcCCCeEEEEecCCCccc--cccccccccccccCCCCCEEEEEcCC-hhHHhhh
Q 045686 231 IPDQMWIGKDEDGRANEILSN-----LRGKKFVLLLDDVWERLD--LSKVGVSDLLDDSSQTGSKIVFTTRS-EEVCGEM 302 (885)
Q Consensus 231 ~~~~~~~~~~~~~~~~~l~~~-----l~~k~~LlVLDdv~~~~~--~~~~~~~~~l~~~~~~gs~IivTTR~-~~v~~~~ 302 (885)
.. .....+. ...+.+. ..+++-++|+|+++.... +..+...+. .....+.+|++|.. ..+...+
T Consensus 92 ~~----~~~~vd~-iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LE---ep~~~t~~Il~t~~~~kl~~~I 163 (504)
T PRK14963 92 AA----SNNSVED-VRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLE---EPPEHVIFILATTEPEKMPPTI 163 (504)
T ss_pred cc----ccCCHHH-HHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHH---hCCCCEEEEEEcCChhhCChHH
Confidence 00 0111221 1122222 234667999999975421 222221111 22234455555543 3332222
Q ss_pred -cccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCchhHH
Q 045686 303 -GARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPLAL 355 (885)
Q Consensus 303 -~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai 355 (885)
.....+++.++++++....+.+.+.......+ .+....|++.++|.+--+
T Consensus 164 ~SRc~~~~f~~ls~~el~~~L~~i~~~egi~i~---~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 164 LSRTQHFRFRRLTEEEIAGKLRRLLEAEGREAE---PEALQLVARLADGAMRDA 214 (504)
T ss_pred hcceEEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 23467899999999999999988754433222 345788999999988644
No 80
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.29 E-value=6.7e-06 Score=92.39 Aligned_cols=195 Identities=16% Similarity=0.194 Sum_probs=107.4
Q ss_pred CCccchhHHHHHHHHHhhcCCC-eEEEEEcCCCCcHHHHHHHHHhhhccCCCC-ccEEEEEEEcCcccHHHHHHHHHHH-
Q 045686 152 GKTVGLDSIISEVWRCIEDHNE-KVIGLYGMGGVGKTTLLKKLNNKFRDTGHD-FDLVIWVKVSRDANLEKIQESILRR- 228 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~-f~~~~wv~v~~~~~~~~~~~~i~~~- 228 (885)
.++||.+..++.|.+++..++. ..+.++|+.|+||||+|+.+.+........ -.... +..+..-.....|...
T Consensus 16 ddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~----~~PCG~C~sC~~I~aG~ 91 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGIT----AQPCGQCRACTEIDAGR 91 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCC----CCCCcccHHHHHHHcCC
Confidence 4689999999999999977665 456889999999999999998876421000 00000 0000000111111100
Q ss_pred ----cCCCccccCCCChhHHHHHHHHH----hcCCCeEEEEecCCCcc--ccccccccccccccCCCCCEEEE-EcCChh
Q 045686 229 ----FEIPDQMWIGKDEDGRANEILSN----LRGKKFVLLLDDVWERL--DLSKVGVSDLLDDSSQTGSKIVF-TTRSEE 297 (885)
Q Consensus 229 ----l~~~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVLDdv~~~~--~~~~~~~~~~l~~~~~~gs~Iiv-TTR~~~ 297 (885)
+.+.. ......++..+.+... ..++.-++|+|++.... ....+...+- ....++++|+ ||....
T Consensus 92 hpDviEIdA--as~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLE---EPP~~v~FILaTtep~k 166 (700)
T PRK12323 92 FVDYIEMDA--ASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLE---EPPEHVKFILATTDPQK 166 (700)
T ss_pred CCcceEecc--cccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhc---cCCCCceEEEEeCChHh
Confidence 00000 0111223222222211 13566799999997642 2222222111 2223455555 554444
Q ss_pred HHhhh-cccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCchhHHHHH
Q 045686 298 VCGEM-GARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPLALVTI 358 (885)
Q Consensus 298 v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~ 358 (885)
+...+ +-...|.+..++.++..+.+.+.+.......+ .+..+.|++.++|.|.-...+
T Consensus 167 LlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d---~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 167 IPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHE---VNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred hhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 43222 22367899999999999999887754433222 234688999999999755443
No 81
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.28 E-value=2.2e-06 Score=84.43 Aligned_cols=47 Identities=26% Similarity=0.427 Sum_probs=33.6
Q ss_pred CccchhHHHHHHHHHh---hcCCCeEEEEEcCCCCcHHHHHHHHHhhhcc
Q 045686 153 KTVGLDSIISEVWRCI---EDHNEKVIGLYGMGGVGKTTLLKKLNNKFRD 199 (885)
Q Consensus 153 ~~vgr~~~~~~l~~~L---~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~ 199 (885)
.||||+++++++...+ .....+.+.|+|++|+|||+|++.++.....
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~ 50 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAE 50 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3899999999999999 2356789999999999999999999988853
No 82
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.28 E-value=1.5e-05 Score=86.98 Aligned_cols=190 Identities=15% Similarity=0.172 Sum_probs=104.5
Q ss_pred CCccchhHHHHHHHHHhhcCCC-eEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHHHcC
Q 045686 152 GKTVGLDSIISEVWRCIEDHNE-KVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILRRFE 230 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~ 230 (885)
.+++|.+..++.+.+.+..++. ..+.++|+.|+||||+|+.+++..... ..... .....-....++.....
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~-~~~~~-------~pc~~c~~c~~~~~~~~ 87 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQ-NGITS-------NPCRKCIICKEIEKGLC 87 (363)
T ss_pred hhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCC-CCCCC-------CCCCCCHHHHHHhcCCC
Confidence 5689999999999999876554 467899999999999999998876311 00000 00000000111111000
Q ss_pred CCcccc---CCCChhHHHHHHHHHh-----cCCCeEEEEecCCCccc--cccccccccccccCCCCCEEEEEcCCh-hHH
Q 045686 231 IPDQMW---IGKDEDGRANEILSNL-----RGKKFVLLLDDVWERLD--LSKVGVSDLLDDSSQTGSKIVFTTRSE-EVC 299 (885)
Q Consensus 231 ~~~~~~---~~~~~~~~~~~l~~~l-----~~k~~LlVLDdv~~~~~--~~~~~~~~~l~~~~~~gs~IivTTR~~-~v~ 299 (885)
...... .....++ ...+.+.+ .+++-++|+|++..... +..+...+- ......++|++|.+. .+.
T Consensus 88 ~d~~~~~~~~~~~v~~-ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lE---e~~~~~~fIl~t~~~~~l~ 163 (363)
T PRK14961 88 LDLIEIDAASRTKVEE-MREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLE---EPPQHIKFILATTDVEKIP 163 (363)
T ss_pred CceEEecccccCCHHH-HHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHh---cCCCCeEEEEEcCChHhhh
Confidence 000000 0011121 12222222 23556999999976532 222211111 233456677766543 333
Q ss_pred hhh-cccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCchhHHH
Q 045686 300 GEM-GARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPLALV 356 (885)
Q Consensus 300 ~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~ 356 (885)
..+ +-...+++.+++.++..+.+.+.+.......+ ++.+..|++.++|.|-.+.
T Consensus 164 ~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i~---~~al~~ia~~s~G~~R~al 218 (363)
T PRK14961 164 KTILSRCLQFKLKIISEEKIFNFLKYILIKESIDTD---EYALKLIAYHAHGSMRDAL 218 (363)
T ss_pred HHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 222 22357899999999999998887644332222 2457889999999886543
No 83
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.26 E-value=9.2e-08 Score=105.11 Aligned_cols=176 Identities=22% Similarity=0.203 Sum_probs=102.1
Q ss_pred cCCccceEEEecccCcccccccccCCCC-chhHHHHHhhc----------CCccCCCCchhhhcCCcccEEecCCCCCCC
Q 045686 509 FDGWHEAVRLSLWGSSIDFLALVEAPSC-PQVRTLLARLT----------MLHTLPIPSRFFDSMDALEVLDLSYNLDLN 577 (885)
Q Consensus 509 ~~~~~~~~~l~l~~~~i~~~~~~~~~~~-~~Lr~L~l~~~----------~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~ 577 (885)
...++++|+|-+.++++.. ...+..+ ..|+.|...+. .... +..++ .-..|.+.+.++| .+.
T Consensus 105 ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd--~~ns~--~Wn~L~~a~fsyN-~L~ 177 (1096)
T KOG1859|consen 105 IFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICHNSLDALRHVFASCGGD--ISNSP--VWNKLATASFSYN-RLV 177 (1096)
T ss_pred eccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhhccHHHHHHHHHHhccc--cccch--hhhhHhhhhcchh-hHH
Confidence 3456789999999888765 3333221 23334433322 0001 11110 1135666777777 666
Q ss_pred cCchhhhcccccceeeccCCcccccChhhhccccccEeecCCcccccccCCcccccCcccceecccccccccccCccccc
Q 045686 578 QLPEEIGRLKNLHHLNLSNTSIGCLPTAIKRLIKLKVLLLDGIQCHLSIPEGVISSLSSLQVFSCFSTELVELIDPLFNE 657 (885)
Q Consensus 578 ~lp~~i~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~ 657 (885)
.+-.++.-++.|++|||++|++...- .+..|++|+||||+.|. +..+|.-....+. |+.|.+.+|.+.
T Consensus 178 ~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~-L~~L~lrnN~l~--------- 245 (1096)
T KOG1859|consen 178 LMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGCK-LQLLNLRNNALT--------- 245 (1096)
T ss_pred hHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccch-hccccccchhhhh-heeeeecccHHH---------
Confidence 66677777777777777777776665 66677777777777775 6666653223333 777777777554
Q ss_pred ccchhhhcCccCCcceeEEEechhhHHhhhCCCcccccceeEEeccccc
Q 045686 658 TAILDELNCLEHLNDLSLTLFSTEAVDKLLNSPKLQRCIRRLTIESSEL 706 (885)
Q Consensus 658 ~~~l~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~ 706 (885)
.+..+.+|.+|+.|+++.+-......+..+..+ ..|+.|.|.+|++
T Consensus 246 --tL~gie~LksL~~LDlsyNll~~hseL~pLwsL-s~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 246 --TLRGIENLKSLYGLDLSYNLLSEHSELEPLWSL-SSLIVLWLEGNPL 291 (1096)
T ss_pred --hhhhHHhhhhhhccchhHhhhhcchhhhHHHHH-HHHHHHhhcCCcc
Confidence 345556666666667665544333333322222 2577777777763
No 84
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.25 E-value=1.1e-05 Score=90.97 Aligned_cols=192 Identities=13% Similarity=0.105 Sum_probs=107.1
Q ss_pred CCccchhHHHHHHHHHhhcCCC-eEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHHHcC
Q 045686 152 GKTVGLDSIISEVWRCIEDHNE-KVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILRRFE 230 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~ 230 (885)
.++||.+...+.|.+++..++. ..+.++|+.|+||||+|+.+++..... ...+ . ..++.-...+.+...-.
T Consensus 15 ddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~-~~~~------~-~pCg~C~sC~~I~~g~h 86 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCE-TGVT------S-TPCEVCATCKAVNEGRF 86 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCC-cCCC------C-CCCccCHHHHHHhcCCC
Confidence 4689999999999999977654 577899999999999999998876311 1000 0 00000001111110000
Q ss_pred CCc---cccCCCChhHHHHHHHH----HhcCCCeEEEEecCCCcc--ccccccccccccccCCCCCEEEEEcCCh-hHHh
Q 045686 231 IPD---QMWIGKDEDGRANEILS----NLRGKKFVLLLDDVWERL--DLSKVGVSDLLDDSSQTGSKIVFTTRSE-EVCG 300 (885)
Q Consensus 231 ~~~---~~~~~~~~~~~~~~l~~----~l~~k~~LlVLDdv~~~~--~~~~~~~~~~l~~~~~~gs~IivTTR~~-~v~~ 300 (885)
... +.......++....+.. -..+++-++|+|++.... ....+...+- ....+.++|++|.+. .+..
T Consensus 87 pDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLE---EPP~~v~FILaTtd~~kIp~ 163 (702)
T PRK14960 87 IDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLE---EPPEHVKFLFATTDPQKLPI 163 (702)
T ss_pred CceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHh---cCCCCcEEEEEECChHhhhH
Confidence 000 00001122222211111 123566799999997542 1222221111 223456777776653 2321
Q ss_pred h-hcccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCchhHHHH
Q 045686 301 E-MGARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPLALVT 357 (885)
Q Consensus 301 ~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~ 357 (885)
. ......+++.+++.++....+.+.+.......+ .+....|++.++|.+..+..
T Consensus 164 TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id---~eAL~~IA~~S~GdLRdALn 218 (702)
T PRK14960 164 TVISRCLQFTLRPLAVDEITKHLGAILEKEQIAAD---QDAIWQIAESAQGSLRDALS 218 (702)
T ss_pred HHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 1 233467899999999999999888755433322 23478899999997755443
No 85
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.25 E-value=1.4e-05 Score=85.60 Aligned_cols=176 Identities=15% Similarity=0.216 Sum_probs=108.0
Q ss_pred CCccchhHHHHHHHHHhhcCCC-eEEEEEcCCCCcHHHHHHHHHhhhcc---CCCCccEEEEEEE-cCcccHHHHHHHHH
Q 045686 152 GKTVGLDSIISEVWRCIEDHNE-KVIGLYGMGGVGKTTLLKKLNNKFRD---TGHDFDLVIWVKV-SRDANLEKIQESIL 226 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~~---~~~~f~~~~wv~v-~~~~~~~~~~~~i~ 226 (885)
.+++|.+..++.+.+++..+.. ..+.++|+.|+||||+|+.++...-. ...+++...|... +....++++ +++.
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~i-r~~~ 82 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDI-RNII 82 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHH-HHHH
Confidence 3578999999999999976554 56689999999999999999886421 1245665555442 222222222 2222
Q ss_pred HHcCCCccccCCCChhHHHHHHHHHhcCCCeEEEEecCCCc--cccccccccccccccCCCCCEEEEEcCChhHH-hh-h
Q 045686 227 RRFEIPDQMWIGKDEDGRANEILSNLRGKKFVLLLDDVWER--LDLSKVGVSDLLDDSSQTGSKIVFTTRSEEVC-GE-M 302 (885)
Q Consensus 227 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~--~~~~~~~~~~~l~~~~~~gs~IivTTR~~~v~-~~-~ 302 (885)
+.+... -..+++-++|+|+++.. ..+..+...+. ....++.+|++|.+.+.. .. .
T Consensus 83 ~~~~~~------------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LE---epp~~t~~il~~~~~~~ll~TI~ 141 (313)
T PRK05564 83 EEVNKK------------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIE---EPPKGVFIILLCENLEQILDTIK 141 (313)
T ss_pred HHHhcC------------------cccCCceEEEEechhhcCHHHHHHHHHHhc---CCCCCeEEEEEeCChHhCcHHHH
Confidence 222111 11245667777777543 22333332222 344578888888765422 11 1
Q ss_pred cccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCchhHHH
Q 045686 303 GARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPLALV 356 (885)
Q Consensus 303 ~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~ 356 (885)
+....+.+.++++++....+.+.... .+ .+.++.++..++|.|..+.
T Consensus 142 SRc~~~~~~~~~~~~~~~~l~~~~~~----~~---~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 142 SRCQIYKLNRLSKEEIEKFISYKYND----IK---EEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred hhceeeeCCCcCHHHHHHHHHHHhcC----CC---HHHHHHHHHHcCCCHHHHH
Confidence 23468899999999998888765531 11 2236788999999987654
No 86
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.25 E-value=1.4e-05 Score=89.22 Aligned_cols=181 Identities=16% Similarity=0.188 Sum_probs=102.8
Q ss_pred CCccchhHHHHHHHHHhhcCCC-eEEEEEcCCCCcHHHHHHHHHhhhccCCC-Ccc-----------------EEEEEEE
Q 045686 152 GKTVGLDSIISEVWRCIEDHNE-KVIGLYGMGGVGKTTLLKKLNNKFRDTGH-DFD-----------------LVIWVKV 212 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~~~~~-~f~-----------------~~~wv~v 212 (885)
.++||.+...+.|...+..+.. ..+.++|++|+||||+|+.+++....... .+. .+..+..
T Consensus 14 ~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~a 93 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDA 93 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeC
Confidence 5689999998888888877665 45789999999999999999887532100 000 0111111
Q ss_pred cCcccHHHHHHHHHHHcCCCccccCCCChhHHHHHHHHH-----hcCCCeEEEEecCCCccc--cccccccccccccCCC
Q 045686 213 SRDANLEKIQESILRRFEIPDQMWIGKDEDGRANEILSN-----LRGKKFVLLLDDVWERLD--LSKVGVSDLLDDSSQT 285 (885)
Q Consensus 213 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-----l~~k~~LlVLDdv~~~~~--~~~~~~~~~l~~~~~~ 285 (885)
+.. ...++. ..+.+. ..+++-++|+|++..... ...+...+- ....
T Consensus 94 a~~-----------------------~gid~i-R~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE---~p~~ 146 (472)
T PRK14962 94 ASN-----------------------RGIDEI-RKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLE---EPPS 146 (472)
T ss_pred ccc-----------------------CCHHHH-HHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHH---hCCC
Confidence 111 111111 122222 234567999999964321 111211111 1122
Q ss_pred CCEEEEEcCC-hhHHhhh-cccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCC-chhHHHHHHHHH
Q 045686 286 GSKIVFTTRS-EEVCGEM-GARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRG-LPLALVTIGHAM 362 (885)
Q Consensus 286 gs~IivTTR~-~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G-lPLai~~~~~~l 362 (885)
...+|++|.+ ..+...+ .....+.+.+++.++....+.+.+......-+ .+....|++.++| ++.|+..+-.+.
T Consensus 147 ~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~---~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 147 HVVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEID---REALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred cEEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3344444433 3343322 23357899999999999999888754332222 3457788887765 456666665433
No 87
>PLN03150 hypothetical protein; Provisional
Probab=98.24 E-value=8.9e-07 Score=103.58 Aligned_cols=86 Identities=28% Similarity=0.413 Sum_probs=50.7
Q ss_pred ccEEecCCCCCCCcCchhhhcccccceeeccCCccc-ccChhhhccccccEeecCCcccccccCCcccccCcccceeccc
Q 045686 565 LEVLDLSYNLDLNQLPEEIGRLKNLHHLNLSNTSIG-CLPTAIKRLIKLKVLLLDGIQCHLSIPEGVISSLSSLQVFSCF 643 (885)
Q Consensus 565 L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~Ls~~~i~-~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~ 643 (885)
++.|+|++|.....+|..+++|++|++|+|++|.+. .+|..++.+++|+.|++++|.....+|.. +++|++|++|+++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEECc
Confidence 555666666333355666666666666666666553 56656666666666666666544455554 5666666666666
Q ss_pred cccccccc
Q 045686 644 STELVELI 651 (885)
Q Consensus 644 ~~~~~~~~ 651 (885)
+|.+.+.+
T Consensus 499 ~N~l~g~i 506 (623)
T PLN03150 499 GNSLSGRV 506 (623)
T ss_pred CCcccccC
Confidence 66655443
No 88
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.21 E-value=1.3e-05 Score=86.08 Aligned_cols=199 Identities=10% Similarity=0.080 Sum_probs=109.8
Q ss_pred ccCCCCccchhHHHHHHHHHhhcCCC-eEEEEEcCCCCcHHHHHHHHHhhhccCCC-CccEEEEEEEcCcccHHHHHHHH
Q 045686 148 ERPIGKTVGLDSIISEVWRCIEDHNE-KVIGLYGMGGVGKTTLLKKLNNKFRDTGH-DFDLVIWVKVSRDANLEKIQESI 225 (885)
Q Consensus 148 ~~~~~~~vgr~~~~~~l~~~L~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~~~~~-~f~~~~wv~v~~~~~~~~~~~~i 225 (885)
|+....++|.++..+.+...+..++. ..+.|+|+.|+||||+|..++...-.... .+... ............+.+
T Consensus 19 P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~i 95 (351)
T PRK09112 19 PSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQI 95 (351)
T ss_pred CCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHHH
Confidence 33446789999999999999977654 46889999999999999999887642100 01111 000111111122222
Q ss_pred HHH-------cCCCcccc-----CCCChhHHHHHHHHHhc-----CCCeEEEEecCCCccc--cccccccccccccCCCC
Q 045686 226 LRR-------FEIPDQMW-----IGKDEDGRANEILSNLR-----GKKFVLLLDDVWERLD--LSKVGVSDLLDDSSQTG 286 (885)
Q Consensus 226 ~~~-------l~~~~~~~-----~~~~~~~~~~~l~~~l~-----~k~~LlVLDdv~~~~~--~~~~~~~~~l~~~~~~g 286 (885)
... +..+.... .....++ +..+.+.+. +++-++|+|++..... ...+.. .+. ....+
T Consensus 96 ~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~-iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk--~LE-Epp~~ 171 (351)
T PRK09112 96 AQGAHPNLLHITRPFDEKTGKFKTAITVDE-IRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILK--TLE-EPPAR 171 (351)
T ss_pred HcCCCCCEEEeecccccccccccccCCHHH-HHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHH--HHh-cCCCC
Confidence 221 10000000 0111233 334444443 5677999999976432 112211 111 22233
Q ss_pred CEEEE-EcCChhHHhhh-cccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCchhHHHHH
Q 045686 287 SKIVF-TTRSEEVCGEM-GARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPLALVTI 358 (885)
Q Consensus 287 s~Iiv-TTR~~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~ 358 (885)
..+|+ |++...+.... .....+.+.+++.++...++.+...... . -.+....|++.++|.|.....+
T Consensus 172 ~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~--~---~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 172 ALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG--S---DGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred ceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC--C---CHHHHHHHHHHcCCCHHHHHHH
Confidence 44444 44443332221 1235899999999999999987432211 1 1234678999999999866543
No 89
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.20 E-value=3.9e-05 Score=84.29 Aligned_cols=182 Identities=12% Similarity=0.187 Sum_probs=105.0
Q ss_pred CCccchhHHHHHHHHHhhcCCC-eEEEEEcCCCCcHHHHHHHHHhhhccCC-C------------------CccEEEEEE
Q 045686 152 GKTVGLDSIISEVWRCIEDHNE-KVIGLYGMGGVGKTTLLKKLNNKFRDTG-H------------------DFDLVIWVK 211 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~~~~-~------------------~f~~~~wv~ 211 (885)
.+++|.+..++.+.+++..+.. ..+.++|++|+||||+|+.++....... . +++. .++.
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~-~~~~ 92 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV-IEID 92 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-EEee
Confidence 4689999999999999976554 4678899999999999999987753110 0 1221 2221
Q ss_pred EcCcccHHHHHHHHHHHcCCCccccCCCChhHHHHHHHHHhcCCCeEEEEecCCCccc--cccccccccccccCCCCCEE
Q 045686 212 VSRDANLEKIQESILRRFEIPDQMWIGKDEDGRANEILSNLRGKKFVLLLDDVWERLD--LSKVGVSDLLDDSSQTGSKI 289 (885)
Q Consensus 212 v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~--~~~~~~~~~l~~~~~~gs~I 289 (885)
........ ..+++...+... -..+++-++|+|++..... ...+...+. .....+.+
T Consensus 93 ~~~~~~~~-~~~~l~~~~~~~------------------p~~~~~~vviidea~~l~~~~~~~Ll~~le---~~~~~~~l 150 (355)
T TIGR02397 93 AASNNGVD-DIREILDNVKYA------------------PSSGKYKVYIIDEVHMLSKSAFNALLKTLE---EPPEHVVF 150 (355)
T ss_pred ccccCCHH-HHHHHHHHHhcC------------------cccCCceEEEEeChhhcCHHHHHHHHHHHh---CCccceeE
Confidence 11111111 011111111100 0124556899999864321 222211111 22335666
Q ss_pred EEEcCChh-HHhhh-cccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCchhHHHHHH
Q 045686 290 VFTTRSEE-VCGEM-GARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPLALVTIG 359 (885)
Q Consensus 290 ivTTR~~~-v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~ 359 (885)
|++|.+.. +...+ .....+++.++++++....+...+.......+ .+.+..+++.++|.|..+....
T Consensus 151 Il~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~---~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 151 ILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIE---DEALELIARAADGSLRDALSLL 219 (355)
T ss_pred EEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCChHHHHHHH
Confidence 66665543 22221 22357888999999999999887754332222 3457889999999887665433
No 90
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.20 E-value=2.2e-05 Score=88.62 Aligned_cols=184 Identities=16% Similarity=0.181 Sum_probs=105.2
Q ss_pred CCccchhHHHHHHHHHhhcCCC-eEEEEEcCCCCcHHHHHHHHHhhhccCCC------------------CccEEEEEEE
Q 045686 152 GKTVGLDSIISEVWRCIEDHNE-KVIGLYGMGGVGKTTLLKKLNNKFRDTGH------------------DFDLVIWVKV 212 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~~~~~------------------~f~~~~wv~v 212 (885)
.+++|.+..++.|...+..++. ..+.++|+.|+||||+|+.+++....... .|.-.+++..
T Consensus 16 ~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieida 95 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDA 95 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeec
Confidence 4689999999999999977554 45778999999999999999886531100 1111222221
Q ss_pred cCcccHHHHHHHHHHHcCCCccccCCCChhHHHHHHHH-HhcCCCeEEEEecCCCccc--cccccccccccccCCCCCEE
Q 045686 213 SRDANLEKIQESILRRFEIPDQMWIGKDEDGRANEILS-NLRGKKFVLLLDDVWERLD--LSKVGVSDLLDDSSQTGSKI 289 (885)
Q Consensus 213 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVLDdv~~~~~--~~~~~~~~~l~~~~~~gs~I 289 (885)
.....++. ..++...+.. -..+++-++|+||+..... ...+...+- .....+.+
T Consensus 96 as~~gvd~--------------------ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LE---epp~~v~f 152 (546)
T PRK14957 96 ASRTGVEE--------------------TKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLE---EPPEYVKF 152 (546)
T ss_pred ccccCHHH--------------------HHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHh---cCCCCceE
Confidence 11111111 1112222211 1235677999999965422 222211111 22234555
Q ss_pred EE-EcCChhHHhh-hcccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCchh-HHHHHHHH
Q 045686 290 VF-TTRSEEVCGE-MGARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPL-ALVTIGHA 361 (885)
Q Consensus 290 iv-TTR~~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPL-ai~~~~~~ 361 (885)
|+ ||....+... ......+++.+++.++....+.+.+.......+ .+....|++.++|.+- |+..+-.+
T Consensus 153 IL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~e---~~Al~~Ia~~s~GdlR~alnlLek~ 224 (546)
T PRK14957 153 ILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINSD---EQSLEYIAYHAKGSLRDALSLLDQA 224 (546)
T ss_pred EEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 54 5544444322 223468899999999998888876644332222 3346789999999664 54444433
No 91
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.20 E-value=3.2e-07 Score=90.66 Aligned_cols=104 Identities=23% Similarity=0.276 Sum_probs=54.8
Q ss_pred HHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCc---hhhhcccccceeeccCCcc----cccChhhhccccc
Q 045686 540 RTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLP---EEIGRLKNLHHLNLSNTSI----GCLPTAIKRLIKL 612 (885)
Q Consensus 540 r~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp---~~i~~L~~L~~L~Ls~~~i----~~lp~~i~~L~~L 612 (885)
..|.+.++.+........+-..+..++.|||.+| .|..-. ..+.+|++|++|+|+.|.+ +.+| ..+.+|
T Consensus 48 ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N-~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl 123 (418)
T KOG2982|consen 48 ELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGN-LISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNL 123 (418)
T ss_pred hhheecCCCCCcchhHHHHHHHhhhhhhhhcccc-hhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccce
Confidence 3444445544442222232344566677777776 554332 2234567777777776654 3444 235667
Q ss_pred cEeecCCcccccccCCcccccCcccceeccccccc
Q 045686 613 KVLLLDGIQCHLSIPEGVISSLSSLQVFSCFSTEL 647 (885)
Q Consensus 613 ~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~ 647 (885)
++|-|.|+..--.-....+..++.++.|+++.|++
T Consensus 124 ~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~ 158 (418)
T KOG2982|consen 124 RVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSL 158 (418)
T ss_pred EEEEEcCCCCChhhhhhhhhcchhhhhhhhccchh
Confidence 77777766422222222255666677777776643
No 92
>PLN03025 replication factor C subunit; Provisional
Probab=98.20 E-value=1.3e-05 Score=86.06 Aligned_cols=180 Identities=15% Similarity=0.177 Sum_probs=105.1
Q ss_pred CCccchhHHHHHHHHHhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCcc-EEEEEEEcCcccHHHHHHHHHHHcC
Q 045686 152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFD-LVIWVKVSRDANLEKIQESILRRFE 230 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~-~~~wv~v~~~~~~~~~~~~i~~~l~ 230 (885)
.+++|.++.++.|..++..+..+-+.++|++|+||||+|+.+++... ...|. .++-+..++..+.. ..++++..+.
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~--~~~~~~~~~eln~sd~~~~~-~vr~~i~~~~ 89 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELL--GPNYKEAVLELNASDDRGID-VVRNKIKMFA 89 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHh--cccCccceeeecccccccHH-HHHHHHHHHH
Confidence 46889999999998888777667788999999999999999998763 12222 12222223222222 1222221110
Q ss_pred CCccccCCCChhHHHHHHHHHhcCCCeEEEEecCCCcccc--ccccccccccccCCCCCEEEEEcCCh-hHHhhh-cccc
Q 045686 231 IPDQMWIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDL--SKVGVSDLLDDSSQTGSKIVFTTRSE-EVCGEM-GARR 306 (885)
Q Consensus 231 ~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~--~~~~~~~~l~~~~~~gs~IivTTR~~-~v~~~~-~~~~ 306 (885)
... . ..-.++.-++|+||++....- ..+....- .....+++|+++... .+...+ ....
T Consensus 90 ~~~---~------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE---~~~~~t~~il~~n~~~~i~~~L~SRc~ 151 (319)
T PLN03025 90 QKK---V------------TLPPGRHKIVILDEADSMTSGAQQALRRTME---IYSNTTRFALACNTSSKIIEPIQSRCA 151 (319)
T ss_pred hcc---c------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHh---cccCCceEEEEeCCccccchhHHHhhh
Confidence 000 0 000135679999999764321 11111111 223456777766542 221111 1235
Q ss_pred eeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCchhHH
Q 045686 307 RFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPLAL 355 (885)
Q Consensus 307 ~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai 355 (885)
.+++.++++++....+...+......-+ .+....|++.++|-.-.+
T Consensus 152 ~i~f~~l~~~~l~~~L~~i~~~egi~i~---~~~l~~i~~~~~gDlR~a 197 (319)
T PLN03025 152 IVRFSRLSDQEILGRLMKVVEAEKVPYV---PEGLEAIIFTADGDMRQA 197 (319)
T ss_pred cccCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 7899999999999999888754443332 235788999999876443
No 93
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.19 E-value=4.8e-06 Score=88.01 Aligned_cols=91 Identities=18% Similarity=0.215 Sum_probs=63.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcc--cHHHHHHHHHHHcCCCccccCCCChhHHHH--
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDA--NLEKIQESILRRFEIPDQMWIGKDEDGRAN-- 246 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~-- 246 (885)
+.+.-.+|+|++|+||||||+.+++... ..+|+.++||.+.+.. ++.++++.+...+-... ++. .......
T Consensus 167 GkGQR~lIvgppGvGKTTLaK~Ian~I~--~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st--~d~-~~~~~~~~a 241 (416)
T PRK09376 167 GKGQRGLIVAPPKAGKTVLLQNIANSIT--TNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVAST--FDE-PAERHVQVA 241 (416)
T ss_pred ccCceEEEeCCCCCChhHHHHHHHHHHH--hhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEEC--CCC-CHHHHHHHH
Confidence 5678889999999999999999999986 3489999999999887 67777777763211111 111 1111111
Q ss_pred ----HHHHH--hcCCCeEEEEecCCC
Q 045686 247 ----EILSN--LRGKKFVLLLDDVWE 266 (885)
Q Consensus 247 ----~l~~~--l~~k~~LlVLDdv~~ 266 (885)
...+. -.++.++|++|++..
T Consensus 242 ~~~ie~Ae~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 242 EMVIEKAKRLVEHGKDVVILLDSITR 267 (416)
T ss_pred HHHHHHHHHHHHcCCCEEEEEEChHH
Confidence 11222 257999999999953
No 94
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.18 E-value=2.7e-05 Score=78.26 Aligned_cols=164 Identities=16% Similarity=0.175 Sum_probs=95.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHHHcCCCccccCCCChhHHHHHHHHHh
Q 045686 173 EKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILRRFEIPDQMWIGKDEDGRANEILSNL 252 (885)
Q Consensus 173 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 252 (885)
...+.|+|..|+|||.|.+.+++..... ..-..++|++ ..+....+...+.. ... ..+.+.+
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~-~~~~~v~y~~------~~~f~~~~~~~~~~-------~~~----~~~~~~~ 95 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQ-HPGKRVVYLS------AEEFIREFADALRD-------GEI----EEFKDRL 95 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHH-CTTS-EEEEE------HHHHHHHHHHHHHT-------TSH----HHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhc-cccccceeec------HHHHHHHHHHHHHc-------ccc----hhhhhhh
Confidence 3568899999999999999999987432 1122355654 34444445444321 112 2233344
Q ss_pred cCCCeEEEEecCCCccccc---cccccccccccCCCCCEEEEEcCCh---------hHHhhhcccceeeccCCChHHHHH
Q 045686 253 RGKKFVLLLDDVWERLDLS---KVGVSDLLDDSSQTGSKIVFTTRSE---------EVCGEMGARRRFRVECLSPEAALD 320 (885)
Q Consensus 253 ~~k~~LlVLDdv~~~~~~~---~~~~~~~l~~~~~~gs~IivTTR~~---------~v~~~~~~~~~~~l~~L~~~~~~~ 320 (885)
+ .--+|++||+.....-. +....+ +-.....|.+||+|++.. ++...+.....+++.++++++-..
T Consensus 96 ~-~~DlL~iDDi~~l~~~~~~q~~lf~l-~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~ 173 (219)
T PF00308_consen 96 R-SADLLIIDDIQFLAGKQRTQEELFHL-FNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRR 173 (219)
T ss_dssp C-TSSEEEEETGGGGTTHHHHHHHHHHH-HHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHH
T ss_pred h-cCCEEEEecchhhcCchHHHHHHHHH-HHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHH
Confidence 4 45688999997643221 111111 111234577999999653 234455566789999999999999
Q ss_pred HHHHHhcCcccCCccchHHHHHHHHHHhCCchhHHHHHH
Q 045686 321 LFRYKVGEDVYSSHFEISNLAQTVVEECRGLPLALVTIG 359 (885)
Q Consensus 321 Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~ 359 (885)
++.+.+......-+ ++++.-|++.+.+..-.+..+-
T Consensus 174 il~~~a~~~~~~l~---~~v~~~l~~~~~~~~r~L~~~l 209 (219)
T PF00308_consen 174 ILQKKAKERGIELP---EEVIEYLARRFRRDVRELEGAL 209 (219)
T ss_dssp HHHHHHHHTT--S----HHHHHHHHHHTTSSHHHHHHHH
T ss_pred HHHHHHHHhCCCCc---HHHHHHHHHhhcCCHHHHHHHH
Confidence 99999865544433 3457778888877665554433
No 95
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.18 E-value=1.3e-05 Score=93.90 Aligned_cols=167 Identities=23% Similarity=0.315 Sum_probs=96.3
Q ss_pred CCccchhHHHH---HHHHHhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHHH
Q 045686 152 GKTVGLDSIIS---EVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILRR 228 (885)
Q Consensus 152 ~~~vgr~~~~~---~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~ 228 (885)
++++|++..+. .+.+.+.......+.++|++|+||||+|+.+++... ..|. .++.+. .....
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~---~~f~---~lna~~-~~i~d-------- 92 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTR---AHFS---SLNAVL-AGVKD-------- 92 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhc---Ccce---eehhhh-hhhHH--------
Confidence 56899988774 566677767777889999999999999999998763 3331 111110 00000
Q ss_pred cCCCccccCCCChhHHHHHHHHHh--cCCCeEEEEecCCCccc--cccccccccccccCCCCCEEEE--EcCChh--HHh
Q 045686 229 FEIPDQMWIGKDEDGRANEILSNL--RGKKFVLLLDDVWERLD--LSKVGVSDLLDDSSQTGSKIVF--TTRSEE--VCG 300 (885)
Q Consensus 229 l~~~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVLDdv~~~~~--~~~~~~~~~l~~~~~~gs~Iiv--TTR~~~--v~~ 300 (885)
..+......+.+ .+++.+||+||++.... ...+. . ....|..++| ||.+.. +..
T Consensus 93 ------------ir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL---~---~lE~g~IiLI~aTTenp~~~l~~ 154 (725)
T PRK13341 93 ------------LRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALL---P---WVENGTITLIGATTENPYFEVNK 154 (725)
T ss_pred ------------HHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHH---H---HhcCceEEEEEecCCChHhhhhh
Confidence 111111121111 24678999999975321 11111 1 1233554555 344432 211
Q ss_pred hh-cccceeeccCCChHHHHHHHHHHhc-------CcccCCccchHHHHHHHHHHhCCchhH
Q 045686 301 EM-GARRRFRVECLSPEAALDLFRYKVG-------EDVYSSHFEISNLAQTVVEECRGLPLA 354 (885)
Q Consensus 301 ~~-~~~~~~~l~~L~~~~~~~Lf~~~~~-------~~~~~~~~~~~~~~~~I~~~c~GlPLa 354 (885)
.+ .....+.+++++.++...++.+.+. ......+ ++....|++.+.|..-.
T Consensus 155 aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~---deaL~~La~~s~GD~R~ 213 (725)
T PRK13341 155 ALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLE---PEAEKHLVDVANGDARS 213 (725)
T ss_pred HhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCC---HHHHHHHHHhCCCCHHH
Confidence 11 1235789999999999999988764 1111121 34567888888876543
No 96
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.18 E-value=1.1e-05 Score=88.44 Aligned_cols=190 Identities=11% Similarity=0.050 Sum_probs=105.7
Q ss_pred CCccchhHHHHHHHHHhhcCCCe-EEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHHHcC
Q 045686 152 GKTVGLDSIISEVWRCIEDHNEK-VIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILRRFE 230 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~ 230 (885)
.++||.+..+..|..++..++.. .+.++|+.|+||||+|+.+++.... ..... ...+.....- ..+.....
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnc--e~~~~--~~pCg~C~sC----~~i~~g~~ 89 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNC--ENPIG--NEPCNECTSC----LEITKGIS 89 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCc--ccccC--ccccCCCcHH----HHHHccCC
Confidence 56899999999999999876654 5789999999999999999887632 11100 0011111111 11111110
Q ss_pred CCcccc---CCCChhH---HHHHHHH-HhcCCCeEEEEecCCCcc--ccccccccccccccCCCCCEEEE-EcCChhHHh
Q 045686 231 IPDQMW---IGKDEDG---RANEILS-NLRGKKFVLLLDDVWERL--DLSKVGVSDLLDDSSQTGSKIVF-TTRSEEVCG 300 (885)
Q Consensus 231 ~~~~~~---~~~~~~~---~~~~l~~-~l~~k~~LlVLDdv~~~~--~~~~~~~~~~l~~~~~~gs~Iiv-TTR~~~v~~ 300 (885)
...-.. .....++ +...+.. ...++.-++|+|++.... .+..+...+- .......+|+ ||....+..
T Consensus 90 ~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLE---EPp~~viFILaTte~~kI~~ 166 (484)
T PRK14956 90 SDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLE---EPPAHIVFILATTEFHKIPE 166 (484)
T ss_pred ccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhh---cCCCceEEEeecCChhhccH
Confidence 000000 0111222 2222221 123566799999997542 2223221111 2223344444 554444432
Q ss_pred hh-cccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCchhHH
Q 045686 301 EM-GARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPLAL 355 (885)
Q Consensus 301 ~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai 355 (885)
.+ .-...|.+.+++.++..+.+.+.+......-+ .+....|++.++|.+.-+
T Consensus 167 TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~e---~eAL~~Ia~~S~Gd~RdA 219 (484)
T PRK14956 167 TILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQYD---QEGLFWIAKKGDGSVRDM 219 (484)
T ss_pred HHHhhhheeeecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCChHHHH
Confidence 22 22357999999999999999887754433222 345788999999988543
No 97
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.18 E-value=1.2e-05 Score=76.83 Aligned_cols=130 Identities=22% Similarity=0.251 Sum_probs=88.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEE-------------------EcCccc--------------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVK-------------------VSRDAN-------------- 217 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~-------------------v~~~~~-------------- 217 (885)
..+.|++|+|++|+|||||.+.+..-.....+ .+|+. |-|.|+
T Consensus 26 ~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G----~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~la 101 (240)
T COG1126 26 EKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSG----SITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLA 101 (240)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCcCCCCc----eEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhh
Confidence 56789999999999999999999776543322 22222 112221
Q ss_pred -----------HHHHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccc
Q 045686 218 -----------LEKIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDD 281 (885)
Q Consensus 218 -----------~~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~ 281 (885)
.++...++++.+|+.... ..-+..++..-.|.+.|.-++-++.+|++.+..|.+-+...+ .+..
T Consensus 102 p~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~ 181 (240)
T COG1126 102 PVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKD 181 (240)
T ss_pred hHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHH
Confidence 234456677777765421 123455666677899999999999999999998877653332 1222
Q ss_pred cCCCCCEEEEEcCChhHHhhhcc
Q 045686 282 SSQTGSKIVFTTRSEEVCGEMGA 304 (885)
Q Consensus 282 ~~~~gs~IivTTR~~~v~~~~~~ 304 (885)
....|.+.|+.|+....|..+.+
T Consensus 182 LA~eGmTMivVTHEM~FAr~Vad 204 (240)
T COG1126 182 LAEEGMTMIIVTHEMGFAREVAD 204 (240)
T ss_pred HHHcCCeEEEEechhHHHHHhhh
Confidence 45678999999999888776543
No 98
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.17 E-value=3.6e-05 Score=86.31 Aligned_cols=194 Identities=15% Similarity=0.114 Sum_probs=106.9
Q ss_pred CCccchhHHHHHHHHHhhcCCC-eEEEEEcCCCCcHHHHHHHHHhhhccCCCCccE-EEEEEEcCcccHHHHHHHHHHHc
Q 045686 152 GKTVGLDSIISEVWRCIEDHNE-KVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDL-VIWVKVSRDANLEKIQESILRRF 229 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~-~~wv~v~~~~~~~~~~~~i~~~l 229 (885)
.++||.+..+..|...+..++. ..+.++|+.|+||||+|+.+++..... ..... --+..+... .....+....
T Consensus 21 ~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~-~~~~~~~~~~~C~~C----~~C~~i~~~~ 95 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCS-ALITENTTIKTCEQC----TNCISFNNHN 95 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCc-cccccCcCcCCCCCC----hHHHHHhcCC
Confidence 4689999999999888866553 578899999999999999998876321 11000 000000000 0011111000
Q ss_pred CCCc---cccCCCChhHHHHHHHHH----hcCCCeEEEEecCCCcc--ccccccccccccccCCCCCEEEE-EcCChhHH
Q 045686 230 EIPD---QMWIGKDEDGRANEILSN----LRGKKFVLLLDDVWERL--DLSKVGVSDLLDDSSQTGSKIVF-TTRSEEVC 299 (885)
Q Consensus 230 ~~~~---~~~~~~~~~~~~~~l~~~----l~~k~~LlVLDdv~~~~--~~~~~~~~~~l~~~~~~gs~Iiv-TTR~~~v~ 299 (885)
.... +.......++....+... +.+++-++|+|+++... .+..+...+. .....+.+|+ ||+...+.
T Consensus 96 h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LE---epp~~~vfI~aTte~~kI~ 172 (507)
T PRK06645 96 HPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLE---EPPPHIIFIFATTEVQKIP 172 (507)
T ss_pred CCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHh---hcCCCEEEEEEeCChHHhh
Confidence 0000 000111222222222111 23567799999997642 2333322211 2233455554 55555554
Q ss_pred hhhc-ccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCchhHHH
Q 045686 300 GEMG-ARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPLALV 356 (885)
Q Consensus 300 ~~~~-~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~ 356 (885)
..+. ....+.+.+++.++....+.+.+.......+ .+....|++.++|.+--+.
T Consensus 173 ~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie---~eAL~~Ia~~s~GslR~al 227 (507)
T PRK06645 173 ATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTD---IEALRIIAYKSEGSARDAV 227 (507)
T ss_pred HHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 3332 3357899999999999999988865433222 2346789999999775443
No 99
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.16 E-value=2.8e-05 Score=86.36 Aligned_cols=179 Identities=15% Similarity=0.175 Sum_probs=105.0
Q ss_pred CCccchhHHHHHHHHHhhcCCCe-EEEEEcCCCCcHHHHHHHHHhhhccCC------------------CCccEEEEEEE
Q 045686 152 GKTVGLDSIISEVWRCIEDHNEK-VIGLYGMGGVGKTTLLKKLNNKFRDTG------------------HDFDLVIWVKV 212 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~~~~------------------~~f~~~~wv~v 212 (885)
.++||.+..++.|.+.+..++.. .+.++|+.|+||||+|+.++....... +.+.-++.+..
T Consensus 13 ~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eida 92 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDA 92 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEec
Confidence 56899999999999988776654 788999999999999999987542100 01111222322
Q ss_pred cCcccHHHHHHHHHHHcCCCccccCCCChhHHHHHHHHHhcCCCeEEEEecCCCccc--cccccccccccccCCCCCEEE
Q 045686 213 SRDANLEKIQESILRRFEIPDQMWIGKDEDGRANEILSNLRGKKFVLLLDDVWERLD--LSKVGVSDLLDDSSQTGSKIV 290 (885)
Q Consensus 213 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~--~~~~~~~~~l~~~~~~gs~Ii 290 (885)
+....+.++ +++++.... .-+.+++-++|+|++..... ...+...+- .....+.+|
T Consensus 93 as~~~vddI-R~Iie~~~~------------------~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LE---ePp~~v~fI 150 (491)
T PRK14964 93 ASNTSVDDI-KVILENSCY------------------LPISSKFKVYIIDEVHMLSNSAFNALLKTLE---EPAPHVKFI 150 (491)
T ss_pred ccCCCHHHH-HHHHHHHHh------------------ccccCCceEEEEeChHhCCHHHHHHHHHHHh---CCCCCeEEE
Confidence 222222211 111111100 00124667899999964322 222211111 223355666
Q ss_pred EEc-CChhHHhhh-cccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCchhHH
Q 045686 291 FTT-RSEEVCGEM-GARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPLAL 355 (885)
Q Consensus 291 vTT-R~~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai 355 (885)
++| ....+...+ .....+.+.+++.++....+.+.+.......+ .+....|++.++|.+..+
T Consensus 151 latte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~---~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 151 LATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHD---EESLKLIAENSSGSMRNA 214 (491)
T ss_pred EEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 555 444443322 23467899999999999999988865443332 234788999999877544
No 100
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.15 E-value=2.1e-05 Score=88.76 Aligned_cols=194 Identities=14% Similarity=0.109 Sum_probs=104.1
Q ss_pred CCccchhHHHHHHHHHhhcCCC-eEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHHHcC
Q 045686 152 GKTVGLDSIISEVWRCIEDHNE-KVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILRRFE 230 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~ 230 (885)
.+++|++..++.+.+++..++. ..+.++|+.|+||||+|+.++...... . |.... ..+.-.....+.....
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~-~------~~~~~-~Cg~C~sCr~i~~~~h 87 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCL-N------PKDGD-CCNSCSVCESINTNQS 87 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCC-C------CCCCC-CCcccHHHHHHHcCCC
Confidence 5689999999999999976554 468899999999999999998876321 1 11100 0111111111111100
Q ss_pred CCcccc---CCCChhHHHHHHHHH-----hcCCCeEEEEecCCCcc--ccccccccccccccCCCCCEEEEEc-CChhHH
Q 045686 231 IPDQMW---IGKDEDGRANEILSN-----LRGKKFVLLLDDVWERL--DLSKVGVSDLLDDSSQTGSKIVFTT-RSEEVC 299 (885)
Q Consensus 231 ~~~~~~---~~~~~~~~~~~l~~~-----l~~k~~LlVLDdv~~~~--~~~~~~~~~~l~~~~~~gs~IivTT-R~~~v~ 299 (885)
...... .....++. +.+.+. ..+++-++|+|++.... ....+...+- .....+.+|++| ....+.
T Consensus 88 ~DiieIdaas~igVd~I-ReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLE---EPp~~tvfIL~Tt~~~KLl 163 (605)
T PRK05896 88 VDIVELDAASNNGVDEI-RNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLE---EPPKHVVFIFATTEFQKIP 163 (605)
T ss_pred CceEEeccccccCHHHH-HHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHH---hCCCcEEEEEECCChHhhh
Confidence 000000 01112221 112211 12345579999996532 1222211111 222344555444 433443
Q ss_pred hh-hcccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCchh-HHHHHHH
Q 045686 300 GE-MGARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPL-ALVTIGH 360 (885)
Q Consensus 300 ~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPL-ai~~~~~ 360 (885)
.. ......+++.++++++....+.+.+.......+ .+.+..+++.++|.+- |+..+-.
T Consensus 164 ~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is---~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 164 LTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIE---DNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred HHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHHHHHHH
Confidence 22 223457899999999999999887754332222 2347889999999664 4444433
No 101
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.13 E-value=2.8e-07 Score=93.44 Aligned_cols=90 Identities=21% Similarity=0.194 Sum_probs=44.7
Q ss_pred CCccceEEEecccCccccccc----ccCCCCchhHHHHHhhcCCc--cCCCCch------hhhcCCcccEEecCCCCCCC
Q 045686 510 DGWHEAVRLSLWGSSIDFLAL----VEAPSCPQVRTLLARLTMLH--TLPIPSR------FFDSMDALEVLDLSYNLDLN 577 (885)
Q Consensus 510 ~~~~~~~~l~l~~~~i~~~~~----~~~~~~~~Lr~L~l~~~~l~--~~~~~~~------~~~~l~~L~~L~Ls~~~~i~ 577 (885)
.....++.+.+++|.+..... +.+.+.+.||.-++++--.. ...+|+. .+..+++|++||||+| .+.
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN-A~G 105 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN-AFG 105 (382)
T ss_pred cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc-ccC
Confidence 344578888888887754221 12233345555555443100 0012221 1344556777777766 332
Q ss_pred -cCch----hhhcccccceeeccCCccc
Q 045686 578 -QLPE----EIGRLKNLHHLNLSNTSIG 600 (885)
Q Consensus 578 -~lp~----~i~~L~~L~~L~Ls~~~i~ 600 (885)
.-+. -+..+..|++|.|.+|.+.
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg 133 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGLG 133 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCCC
Confidence 2222 2345666666666666553
No 102
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.13 E-value=5.1e-05 Score=82.75 Aligned_cols=185 Identities=14% Similarity=0.161 Sum_probs=101.0
Q ss_pred CCccchhHHHHHHHHHhhcCC----------CeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHH
Q 045686 152 GKTVGLDSIISEVWRCIEDHN----------EKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKI 221 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~~~----------~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~ 221 (885)
++++|.+..++.|.+++..+. ...+.++|+.|+||||+|+.++....-.... +..+... ..
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~-----~~~Cg~C----~~ 75 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPD-----EPGCGEC----RA 75 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCC-----CCCCCCC----HH
Confidence 457899999999999997643 4568899999999999999998765311000 0000000 00
Q ss_pred HHHHHHHcCCCc-----cccCCCChhHHHHHHHHHh-----cCCCeEEEEecCCCcccc--ccccccccccccCCCCCEE
Q 045686 222 QESILRRFEIPD-----QMWIGKDEDGRANEILSNL-----RGKKFVLLLDDVWERLDL--SKVGVSDLLDDSSQTGSKI 289 (885)
Q Consensus 222 ~~~i~~~l~~~~-----~~~~~~~~~~~~~~l~~~l-----~~k~~LlVLDdv~~~~~~--~~~~~~~~l~~~~~~gs~I 289 (885)
...+... ..+. +.......++. +.+.+.. .+++-++|+|++.....- ..+...+ . ....+..+
T Consensus 76 C~~~~~~-~hpD~~~i~~~~~~i~i~~i-R~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~L--E-ep~~~~~f 150 (394)
T PRK07940 76 CRTVLAG-THPDVRVVAPEGLSIGVDEV-RELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAV--E-EPPPRTVW 150 (394)
T ss_pred HHHHhcC-CCCCEEEeccccccCCHHHH-HHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHh--h-cCCCCCeE
Confidence 0001000 0000 00001112221 2222222 245568889999765321 1121111 1 23345556
Q ss_pred EEEcCC-hhHHhhh-cccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCchhHHHHH
Q 045686 290 VFTTRS-EEVCGEM-GARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPLALVTI 358 (885)
Q Consensus 290 ivTTR~-~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~ 358 (885)
|++|.+ ..+...+ +-...+.+.+++.++....+.+..+. + .+.+..+++.++|.|.....+
T Consensus 151 IL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~~-----~---~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 151 LLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDGV-----D---PETARRAARASQGHIGRARRL 213 (394)
T ss_pred EEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcCC-----C---HHHHHHHHHHcCCCHHHHHHH
Confidence 665555 3443222 22368899999999999888754331 1 234788999999999765433
No 103
>PLN03150 hypothetical protein; Provisional
Probab=98.12 E-value=3.3e-06 Score=98.85 Aligned_cols=107 Identities=22% Similarity=0.321 Sum_probs=84.5
Q ss_pred hhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCchhhhcccccceeeccCCccc-ccChhhhccccccEee
Q 045686 538 QVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPEEIGRLKNLHHLNLSNTSIG-CLPTAIKRLIKLKVLL 616 (885)
Q Consensus 538 ~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~Ls~~~i~-~lp~~i~~L~~L~~L~ 616 (885)
.++.|+|++|.+.. .+|.. +..+++|++|+|++|.....+|..++.+++|++|+|++|++. .+|..+++|++|++|+
T Consensus 419 ~v~~L~L~~n~L~g-~ip~~-i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~ 496 (623)
T PLN03150 419 FIDGLGLDNQGLRG-FIPND-ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILN 496 (623)
T ss_pred EEEEEECCCCCccc-cCCHH-HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEE
Confidence 36677888887764 25554 788999999999999444588988999999999999999884 7888899999999999
Q ss_pred cCCcccccccCCccccc-Ccccceeccccccc
Q 045686 617 LDGIQCHLSIPEGVISS-LSSLQVFSCFSTEL 647 (885)
Q Consensus 617 l~~~~~l~~lp~~~i~~-L~~L~~L~l~~~~~ 647 (885)
+++|.....+|.. ++. +.++..+++.+|..
T Consensus 497 Ls~N~l~g~iP~~-l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 497 LNGNSLSGRVPAA-LGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CcCCcccccCChH-HhhccccCceEEecCCcc
Confidence 9999877788876 544 34667777777654
No 104
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.11 E-value=3.7e-05 Score=88.02 Aligned_cols=193 Identities=15% Similarity=0.171 Sum_probs=105.5
Q ss_pred CCccchhHHHHHHHHHhhcCCC-eEEEEEcCCCCcHHHHHHHHHhhhccCCC-CccEEEEEEEcCcccHHHHHHHHHHHc
Q 045686 152 GKTVGLDSIISEVWRCIEDHNE-KVIGLYGMGGVGKTTLLKKLNNKFRDTGH-DFDLVIWVKVSRDANLEKIQESILRRF 229 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~~~~~-~f~~~~wv~v~~~~~~~~~~~~i~~~l 229 (885)
.++||.+..++.|.+++..++. ..+.++|+.|+||||+|+.+++....... ...+.-. ..++.-.....|..
T Consensus 16 ~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~~i~~-- 89 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACRDIDS-- 89 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHHHHHc--
Confidence 5689999999999999977665 56689999999999999999776531100 0000000 01111111112210
Q ss_pred CCCcc-----ccCCCChhHHHHHHHHHh-----cCCCeEEEEecCCCccc--cccccccccccccCCCCCEEEEEc-CCh
Q 045686 230 EIPDQ-----MWIGKDEDGRANEILSNL-----RGKKFVLLLDDVWERLD--LSKVGVSDLLDDSSQTGSKIVFTT-RSE 296 (885)
Q Consensus 230 ~~~~~-----~~~~~~~~~~~~~l~~~l-----~~k~~LlVLDdv~~~~~--~~~~~~~~~l~~~~~~gs~IivTT-R~~ 296 (885)
|...+ .......++..+ +.+.. .++.-++|+|+++.... ...+...+- ......++|++| ...
T Consensus 90 g~h~D~~eldaas~~~Vd~iRe-li~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLE---EPP~~~~fIL~Ttd~~ 165 (618)
T PRK14951 90 GRFVDYTELDAASNRGVDEVQQ-LLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLE---EPPEYLKFVLATTDPQ 165 (618)
T ss_pred CCCCceeecCcccccCHHHHHH-HHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcc---cCCCCeEEEEEECCch
Confidence 00000 001112222222 22221 24556899999976422 222221111 222345555544 444
Q ss_pred hHHhh-hcccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCchhHHHH
Q 045686 297 EVCGE-MGARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPLALVT 357 (885)
Q Consensus 297 ~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~ 357 (885)
.+... ......+.+.+++.++....+.+.+.......+ .+....|++.++|.+.-+..
T Consensus 166 kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie---~~AL~~La~~s~GslR~al~ 224 (618)
T PRK14951 166 KVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAE---PQALRLLARAARGSMRDALS 224 (618)
T ss_pred hhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 44322 223468999999999999999888754433222 24578899999987755443
No 105
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.10 E-value=2.3e-05 Score=85.89 Aligned_cols=173 Identities=17% Similarity=0.213 Sum_probs=98.5
Q ss_pred CCccchhHHHHHHHHHhhc-------------CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccH
Q 045686 152 GKTVGLDSIISEVWRCIED-------------HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANL 218 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~-------------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 218 (885)
.++.|+++.+++|.+.+.- ...+-+.++|++|+|||++|+.+++... ..| +.+..
T Consensus 122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~---~~~-----~~v~~---- 189 (364)
T TIGR01242 122 EDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN---ATF-----IRVVG---- 189 (364)
T ss_pred HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCC---CCE-----Eecch----
Confidence 4578999999999887631 2345689999999999999999998773 333 22211
Q ss_pred HHHHHHHHHHcCCCccccCCCChhHHHHHHHHH-hcCCCeEEEEecCCCccc----------c---ccccccc-cccc-c
Q 045686 219 EKIQESILRRFEIPDQMWIGKDEDGRANEILSN-LRGKKFVLLLDDVWERLD----------L---SKVGVSD-LLDD-S 282 (885)
Q Consensus 219 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVLDdv~~~~~----------~---~~~~~~~-~l~~-~ 282 (885)
..+.... .+ . .......+.+. -...+.+|++||++.... . ..+...+ .+.. .
T Consensus 190 ~~l~~~~---~g--------~-~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~ 257 (364)
T TIGR01242 190 SELVRKY---IG--------E-GARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFD 257 (364)
T ss_pred HHHHHHh---hh--------H-HHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCC
Confidence 1111110 00 0 11112222222 234678999999975310 0 0000000 0000 1
Q ss_pred CCCCCEEEEEcCChhH-----HhhhcccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCch
Q 045686 283 SQTGSKIVFTTRSEEV-----CGEMGARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLP 352 (885)
Q Consensus 283 ~~~gs~IivTTR~~~v-----~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP 352 (885)
...+..||.||...+. .........+.+...+.++..++|+.++.......+.+ ...+++.+.|..
T Consensus 258 ~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 258 PRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVD----LEAIAKMTEGAS 328 (364)
T ss_pred CCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCC----HHHHHHHcCCCC
Confidence 1235678888875432 22112345789999999999999998875443222223 467777887764
No 106
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.08 E-value=2.8e-05 Score=89.10 Aligned_cols=192 Identities=14% Similarity=0.135 Sum_probs=105.7
Q ss_pred CCccchhHHHHHHHHHhhcCCC-eEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHHHcC
Q 045686 152 GKTVGLDSIISEVWRCIEDHNE-KVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILRRFE 230 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~ 230 (885)
.++||.+..++.|.+.+..++. ..+.++|+.|+||||+|+.+++..... ..+.. ..+..-.....|...-.
T Consensus 16 ~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~-~~~~~-------~pCg~C~~C~~i~~g~~ 87 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCE-TGITA-------TPCGECDNCREIEQGRF 87 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhc-cCCCC-------CCCCCCHHHHHHHcCCC
Confidence 5689999999999999977655 346789999999999999998876321 10000 00011111111111000
Q ss_pred CC---ccccCCCChhHHHHHHHHH-----hcCCCeEEEEecCCCccc--cccccccccccccCCCCCEEEEEcCC-hhHH
Q 045686 231 IP---DQMWIGKDEDGRANEILSN-----LRGKKFVLLLDDVWERLD--LSKVGVSDLLDDSSQTGSKIVFTTRS-EEVC 299 (885)
Q Consensus 231 ~~---~~~~~~~~~~~~~~~l~~~-----l~~k~~LlVLDdv~~~~~--~~~~~~~~~l~~~~~~gs~IivTTR~-~~v~ 299 (885)
.. .+.......++.. .+.+. ..+++-++|+|++..... ...+...+- ......++|++|.+ ..+.
T Consensus 88 ~D~ieidaas~~~VddiR-~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLE---EPp~~v~FIL~Tt~~~kLl 163 (647)
T PRK07994 88 VDLIEIDAASRTKVEDTR-ELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLE---EPPEHVKFLLATTDPQKLP 163 (647)
T ss_pred CCceeecccccCCHHHHH-HHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHH---cCCCCeEEEEecCCccccc
Confidence 00 0000011122222 22222 245677999999975421 222211111 22234555554444 4443
Q ss_pred hh-hcccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCchhHHHHH
Q 045686 300 GE-MGARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPLALVTI 358 (885)
Q Consensus 300 ~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~ 358 (885)
.. ..-...|.+.+++.++....+.+.+.......+ .+....|++.++|.+--+..+
T Consensus 164 ~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~e---~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 164 VTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPFE---PRALQLLARAADGSMRDALSL 220 (647)
T ss_pred hHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 22 222468999999999999999887743322221 234678999999988654443
No 107
>PRK05642 DNA replication initiation factor; Validated
Probab=98.07 E-value=6.4e-05 Score=76.55 Aligned_cols=154 Identities=17% Similarity=0.230 Sum_probs=92.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHHHcCCCccccCCCChhHHHHHHHHHh
Q 045686 173 EKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILRRFEIPDQMWIGKDEDGRANEILSNL 252 (885)
Q Consensus 173 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 252 (885)
...+.|+|..|+|||.|++.+++.... . -..++|++..+ +... . ..+.+.+
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~--~-~~~v~y~~~~~------~~~~----------------~----~~~~~~~ 95 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQ--R-GEPAVYLPLAE------LLDR----------------G----PELLDNL 95 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHh--C-CCcEEEeeHHH------HHhh----------------h----HHHHHhh
Confidence 367899999999999999999887632 1 23466765432 1110 0 1122223
Q ss_pred cCCCeEEEEecCCCc---cccccc-cccccccccCCCCCEEEEEcCChh---------HHhhhcccceeeccCCChHHHH
Q 045686 253 RGKKFVLLLDDVWER---LDLSKV-GVSDLLDDSSQTGSKIVFTTRSEE---------VCGEMGARRRFRVECLSPEAAL 319 (885)
Q Consensus 253 ~~k~~LlVLDdv~~~---~~~~~~-~~~~~l~~~~~~gs~IivTTR~~~---------v~~~~~~~~~~~l~~L~~~~~~ 319 (885)
.+- -+||+||+... ..|... ...+. .....|..||+|++... +...+.....++++++++++-.
T Consensus 96 ~~~-d~LiiDDi~~~~~~~~~~~~Lf~l~n--~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~ 172 (234)
T PRK05642 96 EQY-ELVCLDDLDVIAGKADWEEALFHLFN--RLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKL 172 (234)
T ss_pred hhC-CEEEEechhhhcCChHHHHHHHHHHH--HHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHH
Confidence 222 37889999643 122221 11111 02334678999887532 2233344567899999999999
Q ss_pred HHHHHHhcCcccCCccchHHHHHHHHHHhCCchhHHHHHHHH
Q 045686 320 DLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPLALVTIGHA 361 (885)
Q Consensus 320 ~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~ 361 (885)
+++++++......-+ +++..-|++.+.|..-++..+-..
T Consensus 173 ~il~~ka~~~~~~l~---~ev~~~L~~~~~~d~r~l~~~l~~ 211 (234)
T PRK05642 173 RALQLRASRRGLHLT---DEVGHFILTRGTRSMSALFDLLER 211 (234)
T ss_pred HHHHHHHHHcCCCCC---HHHHHHHHHhcCCCHHHHHHHHHH
Confidence 999966643322222 356888888888877665544433
No 108
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.06 E-value=9.3e-06 Score=86.40 Aligned_cols=94 Identities=16% Similarity=0.107 Sum_probs=64.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCc--ccHHHHHHHHHHHcCCCccccCCCChhHHHH--
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRD--ANLEKIQESILRRFEIPDQMWIGKDEDGRAN-- 246 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~-- 246 (885)
..+..++|+|++|+|||||++.+++... ..+|+..+|+.+.+. .++.++++.+...+-....+...........
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I~--~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v 243 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAIT--RNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMV 243 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhhc--ccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHH
Confidence 6778999999999999999999999885 357999999999866 7888999888543322211000000011111
Q ss_pred --HHHH-HhcCCCeEEEEecCCC
Q 045686 247 --EILS-NLRGKKFVLLLDDVWE 266 (885)
Q Consensus 247 --~l~~-~l~~k~~LlVLDdv~~ 266 (885)
.... .-.+++++|++|++..
T Consensus 244 ~e~Ae~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 244 IEKAKRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHHHHHcCCCeEEEEEChhH
Confidence 1111 1257999999999964
No 109
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.06 E-value=7.8e-05 Score=80.62 Aligned_cols=196 Identities=13% Similarity=0.045 Sum_probs=107.9
Q ss_pred CCCCccchhHHHHHHHHHhhcCCCe-EEEEEcCCCCcHHHHHHHHHhhhccCCCC-ccE-EE-EEEEcCcccHHHHHHHH
Q 045686 150 PIGKTVGLDSIISEVWRCIEDHNEK-VIGLYGMGGVGKTTLLKKLNNKFRDTGHD-FDL-VI-WVKVSRDANLEKIQESI 225 (885)
Q Consensus 150 ~~~~~vgr~~~~~~l~~~L~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~~~~~~-f~~-~~-wv~v~~~~~~~~~~~~i 225 (885)
...+++|.+..++.+.+.+..++.. .+.++|+.|+||+|+|..++...--.... ... .. -.+... ...-...+.|
T Consensus 17 ~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~-~~~c~~c~~i 95 (365)
T PRK07471 17 ETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAI-DPDHPVARRI 95 (365)
T ss_pred chhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccC-CCCChHHHHH
Confidence 3457899999999999999876654 58899999999999999888776321100 000 00 000000 0000111111
Q ss_pred HHHcCCCc--------ccc-----CCCChhHHHHHHHHHhc-----CCCeEEEEecCCCccc--cccccccccccccCCC
Q 045686 226 LRRFEIPD--------QMW-----IGKDEDGRANEILSNLR-----GKKFVLLLDDVWERLD--LSKVGVSDLLDDSSQT 285 (885)
Q Consensus 226 ~~~l~~~~--------~~~-----~~~~~~~~~~~l~~~l~-----~k~~LlVLDdv~~~~~--~~~~~~~~~l~~~~~~ 285 (885)
. .-..+. ... .....++ +..+.+.+. +++.++|+||+..... ...+...+- ....
T Consensus 96 ~-~~~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LE---epp~ 170 (365)
T PRK07471 96 A-AGAHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLE---EPPA 170 (365)
T ss_pred H-ccCCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHh---cCCC
Confidence 1 111100 000 0011222 334444432 4677999999975432 111111111 2334
Q ss_pred CCEEEEEcCChh-HHhh-hcccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCchhHHHHH
Q 045686 286 GSKIVFTTRSEE-VCGE-MGARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPLALVTI 358 (885)
Q Consensus 286 gs~IivTTR~~~-v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~ 358 (885)
++.+|++|++.+ +... ......+.+.+++.++..+++.+..... . .+....+++.++|.|..+..+
T Consensus 171 ~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~----~---~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 171 RSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDL----P---DDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred CeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccC----C---HHHHHHHHHHcCCCHHHHHHH
Confidence 566777776653 3222 2234678999999999999998765321 1 111367899999999866544
No 110
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.06 E-value=3.6e-05 Score=87.77 Aligned_cols=190 Identities=14% Similarity=0.121 Sum_probs=104.5
Q ss_pred CCccchhHHHHHHHHHhhcCCC-eEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHHH--
Q 045686 152 GKTVGLDSIISEVWRCIEDHNE-KVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILRR-- 228 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~-- 228 (885)
.++||.+..++.|.+++..++. ..+.++|+.|+||||+|+.+++..... .... +..+... .....+...
T Consensus 16 ddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~-~~~~---~~pCg~C----~sCr~i~~g~~ 87 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCE-NAQH---GEPCGVC----QSCTQIDAGRY 87 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhccc-CCCC---CCCCccc----HHHHHHhccCc
Confidence 4689999999999999987654 467899999999999999998865311 1000 0000000 000000000
Q ss_pred ---cCCCccccCCCChhHHHHHHHH----HhcCCCeEEEEecCCCccc--cccccccccccccCCCCCEEEEEcCCh-hH
Q 045686 229 ---FEIPDQMWIGKDEDGRANEILS----NLRGKKFVLLLDDVWERLD--LSKVGVSDLLDDSSQTGSKIVFTTRSE-EV 298 (885)
Q Consensus 229 ---l~~~~~~~~~~~~~~~~~~l~~----~l~~k~~LlVLDdv~~~~~--~~~~~~~~~l~~~~~~gs~IivTTR~~-~v 298 (885)
+.+.. ......+.+...+.. -..+++-++|+|++..... ...+...+- .....+++|++|.+. .+
T Consensus 88 ~DvlEida--As~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLE---EPp~~v~fILaTtd~~kL 162 (709)
T PRK08691 88 VDLLEIDA--ASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLE---EPPEHVKFILATTDPHKV 162 (709)
T ss_pred cceEEEec--cccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHH---hCCCCcEEEEEeCCcccc
Confidence 00000 011112222221111 1235667999999965322 111111111 222345666666543 23
Q ss_pred Hhh-hcccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCchhHHHH
Q 045686 299 CGE-MGARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPLALVT 357 (885)
Q Consensus 299 ~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~ 357 (885)
... .+....|.+.+++.++....+.+.+.......+ .+....|++.++|.+.-+..
T Consensus 163 ~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id---~eAL~~Ia~~A~GslRdAln 219 (709)
T PRK08691 163 PVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYE---PPALQLLGRAAAGSMRDALS 219 (709)
T ss_pred chHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcC---HHHHHHHHHHhCCCHHHHHH
Confidence 211 122356788899999999999888765433222 24578999999998855443
No 111
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.06 E-value=4e-05 Score=86.63 Aligned_cols=180 Identities=14% Similarity=0.172 Sum_probs=103.3
Q ss_pred CCccchhHHHHHHHHHhhcCCCe-EEEEEcCCCCcHHHHHHHHHhhhccCC------------------CCccEEEEEEE
Q 045686 152 GKTVGLDSIISEVWRCIEDHNEK-VIGLYGMGGVGKTTLLKKLNNKFRDTG------------------HDFDLVIWVKV 212 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~~~~------------------~~f~~~~wv~v 212 (885)
.++||.+..++.|.+++..++.. .+.++|+.|+||||+|+.+++...... +.+.-++.+..
T Consensus 16 ~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eida 95 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDA 95 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEcc
Confidence 46899999999999999776554 568999999999999999988763210 01111222222
Q ss_pred cCcccHHHHHHHHHHHcCCCccccCCCChhHHHHHHHHHhcCCCeEEEEecCCCcc--ccccccccccccccCCCCCEEE
Q 045686 213 SRDANLEKIQESILRRFEIPDQMWIGKDEDGRANEILSNLRGKKFVLLLDDVWERL--DLSKVGVSDLLDDSSQTGSKIV 290 (885)
Q Consensus 213 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~--~~~~~~~~~~l~~~~~~gs~Ii 290 (885)
+....++.+ +++++.+.. .-..++.-++|+|++.... ....+...+- .....+++|
T Consensus 96 as~~~v~~i-R~l~~~~~~------------------~p~~~~~kV~iIDE~~~ls~~a~naLLk~LE---epp~~~~fI 153 (509)
T PRK14958 96 ASRTKVEDT-RELLDNIPY------------------APTKGRFKVYLIDEVHMLSGHSFNALLKTLE---EPPSHVKFI 153 (509)
T ss_pred cccCCHHHH-HHHHHHHhh------------------ccccCCcEEEEEEChHhcCHHHHHHHHHHHh---ccCCCeEEE
Confidence 211112111 112211111 0113466789999997542 2222221111 222346666
Q ss_pred EEcCC-hhHHhhh-cccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCchhHHH
Q 045686 291 FTTRS-EEVCGEM-GARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPLALV 356 (885)
Q Consensus 291 vTTR~-~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~ 356 (885)
++|.+ ..+...+ +....+++.+++.++....+.+.+.......+ .+....|++.++|.+.-+.
T Consensus 154 lattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~---~~al~~ia~~s~GslR~al 218 (509)
T PRK14958 154 LATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFE---NAALDLLARAANGSVRDAL 218 (509)
T ss_pred EEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHH
Confidence 55443 3333221 22356889999999988888777754332222 2346788999999875444
No 112
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=98.05 E-value=3.4e-05 Score=71.90 Aligned_cols=129 Identities=22% Similarity=0.264 Sum_probs=84.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEE---------------------EcCcc-------------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVK---------------------VSRDA------------- 216 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~---------------------v~~~~------------- 216 (885)
+++.++.|+|++|+||||+.+.+|...++..+ .+|+. |-|++
T Consensus 26 ~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G----~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA 101 (223)
T COG2884 26 PKGEFVFLTGPSGAGKSTLLKLIYGEERPTRG----KILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVA 101 (223)
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhhhcCCCc----eEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhh
Confidence 57789999999999999999999998865322 22221 11211
Q ss_pred -----------cHHHHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCcccccc-cccccccc
Q 045686 217 -----------NLEKIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSK-VGVSDLLD 280 (885)
Q Consensus 217 -----------~~~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~-~~~~~~l~ 280 (885)
...+-..+.++..|+.... ..-+..++....+.+++-+++-+|+-|+..-..|.+. ..+.-.+.
T Consensus 102 ~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfe 181 (223)
T COG2884 102 LPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFE 181 (223)
T ss_pred hhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHH
Confidence 1223334445555554321 1234566677788999999999999999876554322 12222233
Q ss_pred ccCCCCCEEEEEcCChhHHhhhc
Q 045686 281 DSSQTGSKIVFTTRSEEVCGEMG 303 (885)
Q Consensus 281 ~~~~~gs~IivTTR~~~v~~~~~ 303 (885)
+.+..|++||++|++.++...+.
T Consensus 182 einr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 182 EINRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HHhhcCcEEEEEeccHHHHHhcc
Confidence 35677999999999999877663
No 113
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.04 E-value=2.3e-05 Score=78.31 Aligned_cols=130 Identities=19% Similarity=0.248 Sum_probs=81.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC----------c---cEEEEEEEcCcc------cH-------------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD----------F---DLVIWVKVSRDA------NL------------- 218 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~----------f---~~~~wv~v~~~~------~~------------- 218 (885)
..+.+++|+|+.|.|||||.+.+..-..+.++. . ..+.||.=...+ ++
T Consensus 28 ~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g 107 (254)
T COG1121 28 EKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKG 107 (254)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCccccc
Confidence 567899999999999999999999855432111 1 245555421111 11
Q ss_pred ---------HHHHHHHHHHcCCCccc---c-CCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccc-cccccccCC
Q 045686 219 ---------EKIQESILRRFEIPDQM---W-IGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGV-SDLLDDSSQ 284 (885)
Q Consensus 219 ---------~~~~~~i~~~l~~~~~~---~-~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~-~~~l~~~~~ 284 (885)
.+...+.++++|+..-. . .-+..+.....+.+.|..++-|++||+.....|...... .-.+.....
T Consensus 108 ~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~ 187 (254)
T COG1121 108 WFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQ 187 (254)
T ss_pred ccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHH
Confidence 24556667777765321 1 223445555678899999999999999987766543211 111222334
Q ss_pred CCCEEEEEcCChhHHh
Q 045686 285 TGSKIVFTTRSEEVCG 300 (885)
Q Consensus 285 ~gs~IivTTR~~~v~~ 300 (885)
.|..||++|++-....
T Consensus 188 eg~tIl~vtHDL~~v~ 203 (254)
T COG1121 188 EGKTVLMVTHDLGLVM 203 (254)
T ss_pred CCCEEEEEeCCcHHhH
Confidence 4999999999976544
No 114
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.03 E-value=5e-06 Score=59.10 Aligned_cols=39 Identities=49% Similarity=0.687 Sum_probs=19.6
Q ss_pred cccEEecCCCCCCCcCchhhhcccccceeeccCCcccccC
Q 045686 564 ALEVLDLSYNLDLNQLPEEIGRLKNLHHLNLSNTSIGCLP 603 (885)
Q Consensus 564 ~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~Ls~~~i~~lp 603 (885)
+|++|++++| .|+.+|..+++|++|++|++++|+|+.+|
T Consensus 2 ~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNN-QITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCC-CCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 4555555555 55555555555555555555555554443
No 115
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.03 E-value=1.3e-05 Score=78.78 Aligned_cols=130 Identities=19% Similarity=0.251 Sum_probs=83.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--ccE------------------EEEEEEcCcc--------------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FDL------------------VIWVKVSRDA-------------- 216 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~~------------------~~wv~v~~~~-------------- 216 (885)
.++.+++|+|++|+|||||...+..-.++..+. |.. +.+ +.|.+
T Consensus 29 ~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGf--vFQ~~nLl~~ltv~ENv~l 106 (226)
T COG1136 29 EAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGF--VFQNFNLLPDLTVLENVEL 106 (226)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEE--ECccCCCCCCCCHHHHHHh
Confidence 578899999999999999999998765442221 111 111 11211
Q ss_pred ----------cHHHHHHHHHHHcCCCccc-----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-ccc
Q 045686 217 ----------NLEKIQESILRRFEIPDQM-----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLD 280 (885)
Q Consensus 217 ----------~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~ 280 (885)
...+....+++.+|+.... ..-+..++....+.+++...+-+|+.|+.....|...-...+ .+.
T Consensus 107 pl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~ 186 (226)
T COG1136 107 PLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLR 186 (226)
T ss_pred HHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHH
Confidence 1133455667777775221 123455667778999999999999999998766654321111 111
Q ss_pred c-cCCCCCEEEEEcCChhHHhhh
Q 045686 281 D-SSQTGSKIVFTTRSEEVCGEM 302 (885)
Q Consensus 281 ~-~~~~gs~IivTTR~~~v~~~~ 302 (885)
. ....|..||+.|++..++..+
T Consensus 187 ~~~~~~g~tii~VTHd~~lA~~~ 209 (226)
T COG1136 187 ELNKERGKTIIMVTHDPELAKYA 209 (226)
T ss_pred HHHHhcCCEEEEEcCCHHHHHhC
Confidence 1 234588999999999999853
No 116
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.01 E-value=5.7e-05 Score=83.48 Aligned_cols=197 Identities=12% Similarity=0.101 Sum_probs=106.4
Q ss_pred CCccchhHHHHHHHHHhhcCCCe-EEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEE-EcCcccHHHHHHHHHHHc
Q 045686 152 GKTVGLDSIISEVWRCIEDHNEK-VIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVK-VSRDANLEKIQESILRRF 229 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~-v~~~~~~~~~~~~i~~~l 229 (885)
.+++|.+..++.|.+++..++.+ .+.++|+.|+||||+|+.+++...-. ..+....|.. +....+.-.....+....
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~-~~~~~~~~~~~~~~~c~~c~~c~~~~~~~ 94 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQ-RMIDDADYLQEVTEPCGECESCRDFDAGT 94 (397)
T ss_pred hhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCC-CCcCcccccccCCCCCCCCHHHHHHhcCC
Confidence 56899999999999999876654 47789999999999999998876321 1111000110 000001001111111100
Q ss_pred CCCcccc---CCCChhHHHHHHHHHh-----cCCCeEEEEecCCCcc--ccccccccccccccCCCCCEEEEEc-CChhH
Q 045686 230 EIPDQMW---IGKDEDGRANEILSNL-----RGKKFVLLLDDVWERL--DLSKVGVSDLLDDSSQTGSKIVFTT-RSEEV 298 (885)
Q Consensus 230 ~~~~~~~---~~~~~~~~~~~l~~~l-----~~k~~LlVLDdv~~~~--~~~~~~~~~~l~~~~~~gs~IivTT-R~~~v 298 (885)
....... .....++.. .+.+.+ .+++-++|+|++.... .+..+...+. .....+.+|++| +...+
T Consensus 95 ~~n~~~~~~~~~~~id~Ir-~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LE---ep~~~t~~Il~t~~~~kl 170 (397)
T PRK14955 95 SLNISEFDAASNNSVDDIR-LLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLE---EPPPHAIFIFATTELHKI 170 (397)
T ss_pred CCCeEeecccccCCHHHHH-HHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHh---cCCCCeEEEEEeCChHHh
Confidence 0000000 011122322 233333 2456689999986543 2222222211 233355655555 44444
Q ss_pred Hhhh-cccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCchhHHH
Q 045686 299 CGEM-GARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPLALV 356 (885)
Q Consensus 299 ~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~ 356 (885)
...+ .....+++.++++++....+...+.......+ .+.+..|++.++|.+--+.
T Consensus 171 ~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~---~~al~~l~~~s~g~lr~a~ 226 (397)
T PRK14955 171 PATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVD---ADALQLIGRKAQGSMRDAQ 226 (397)
T ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 3322 12357899999999999988887743322222 3458899999999775443
No 117
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.00 E-value=5.8e-05 Score=84.29 Aligned_cols=168 Identities=11% Similarity=0.091 Sum_probs=101.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHHHcCCCccccCCCChhHHHHHHHHHhc
Q 045686 174 KVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILRRFEIPDQMWIGKDEDGRANEILSNLR 253 (885)
Q Consensus 174 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 253 (885)
.-+.|+|..|+|||+|++.+++..... ..-..+++++ ...+...+...++.. ......+.+.++
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~-~~~~~v~yv~------~~~f~~~~~~~l~~~---------~~~~~~~~~~~~ 205 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESN-FSDLKVSYMS------GDEFARKAVDILQKT---------HKEIEQFKNEIC 205 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHh-CCCCeEEEEE------HHHHHHHHHHHHHHh---------hhHHHHHHHHhc
Confidence 458899999999999999999865321 1122344543 345556666555321 011223333333
Q ss_pred CCCeEEEEecCCCccc---c-ccccccccccccCCCCCEEEEEcCCh---------hHHhhhcccceeeccCCChHHHHH
Q 045686 254 GKKFVLLLDDVWERLD---L-SKVGVSDLLDDSSQTGSKIVFTTRSE---------EVCGEMGARRRFRVECLSPEAALD 320 (885)
Q Consensus 254 ~k~~LlVLDdv~~~~~---~-~~~~~~~~l~~~~~~gs~IivTTR~~---------~v~~~~~~~~~~~l~~L~~~~~~~ 320 (885)
+.-+||+||+..... + +.+...+. .....|..||+|+... .+...+...-.+.+++++.++-.+
T Consensus 206 -~~dvLiIDDiq~l~~k~~~~e~lf~l~N--~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~ 282 (450)
T PRK14087 206 -QNDVLIIDDVQFLSYKEKTNEIFFTIFN--NFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATA 282 (450)
T ss_pred -cCCEEEEeccccccCCHHHHHHHHHHHH--HHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHH
Confidence 455889999965321 1 11111111 0223456788887643 233444455678899999999999
Q ss_pred HHHHHhcCcccCCccchHHHHHHHHHHhCCchhHHHHHHHH
Q 045686 321 LFRYKVGEDVYSSHFEISNLAQTVVEECRGLPLALVTIGHA 361 (885)
Q Consensus 321 Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~ 361 (885)
++.+++....... .--+++..-|++.++|.|-.+..+...
T Consensus 283 iL~~~~~~~gl~~-~l~~evl~~Ia~~~~gd~R~L~gaL~~ 322 (450)
T PRK14087 283 IIKKEIKNQNIKQ-EVTEEAINFISNYYSDDVRKIKGSVSR 322 (450)
T ss_pred HHHHHHHhcCCCC-CCCHHHHHHHHHccCCCHHHHHHHHHH
Confidence 9999885432110 112467899999999999887655533
No 118
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.00 E-value=6.1e-05 Score=85.79 Aligned_cols=174 Identities=17% Similarity=0.222 Sum_probs=101.3
Q ss_pred CCccchhHHHHHHHHHhhcCCCe-EEEEEcCCCCcHHHHHHHHHhhhccCCC------------------CccEEEEEEE
Q 045686 152 GKTVGLDSIISEVWRCIEDHNEK-VIGLYGMGGVGKTTLLKKLNNKFRDTGH------------------DFDLVIWVKV 212 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~~~~~------------------~f~~~~wv~v 212 (885)
.++||.+..++.+.+++..++.. .+.++|+.|+||||+|+.++........ .|.-.+++..
T Consensus 16 ~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~ 95 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVDA 95 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEeec
Confidence 46899999999999999876554 5679999999999999999877632100 0111111111
Q ss_pred cCcccHHHHHHHHHHHcCCCccccCCCChhHHHHHHHHHh-----cCCCeEEEEecCCCccc--cccccccccccccCCC
Q 045686 213 SRDANLEKIQESILRRFEIPDQMWIGKDEDGRANEILSNL-----RGKKFVLLLDDVWERLD--LSKVGVSDLLDDSSQT 285 (885)
Q Consensus 213 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVLDdv~~~~~--~~~~~~~~~l~~~~~~ 285 (885)
+. ....++.. .+.+.. .+++-++|+|++..... ...+...+- ....
T Consensus 96 ~~-----------------------~~~vd~ir-~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LE---epp~ 148 (527)
T PRK14969 96 AS-----------------------NTQVDAMR-ELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLE---EPPE 148 (527)
T ss_pred cc-----------------------cCCHHHHH-HHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHh---CCCC
Confidence 11 11122211 122211 35667999999975432 122211111 2223
Q ss_pred CCEEEEEcCC-hhHHhh-hcccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCchhHH
Q 045686 286 GSKIVFTTRS-EEVCGE-MGARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPLAL 355 (885)
Q Consensus 286 gs~IivTTR~-~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai 355 (885)
.+.+|++|.+ +.+... ......+++.+++.++....+.+.+.......+ .+....|++.++|.+--+
T Consensus 149 ~~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~~---~~al~~la~~s~Gslr~a 217 (527)
T PRK14969 149 HVKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPFD---ATALQLLARAAAGSMRDA 217 (527)
T ss_pred CEEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 4555555543 333211 122367899999999999888887743332222 234688999999977533
No 119
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.98 E-value=0.00013 Score=72.56 Aligned_cols=173 Identities=16% Similarity=0.197 Sum_probs=100.9
Q ss_pred CCccchhHHHHHHHHHhhc-----CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHH
Q 045686 152 GKTVGLDSIISEVWRCIED-----HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESIL 226 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~-----~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~ 226 (885)
.+|||.++.++++.=.+.. +...-+.++|++|.||||||..+++...+. +. ++......-..-+..|+
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn---~k----~tsGp~leK~gDlaaiL 98 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVN---LK----ITSGPALEKPGDLAAIL 98 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCC---eE----ecccccccChhhHHHHH
Confidence 5799999999988777732 556789999999999999999999987432 21 11111111111112222
Q ss_pred HHcCCCccccCCCChhHHHHHHHHHhcCCCeEEEEecCCCcc---------ccccccccccccccCCCCCE---------
Q 045686 227 RRFEIPDQMWIGKDEDGRANEILSNLRGKKFVLLLDDVWERL---------DLSKVGVSDLLDDSSQTGSK--------- 288 (885)
Q Consensus 227 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~---------~~~~~~~~~~l~~~~~~gs~--------- 288 (885)
..+. ..-+|.+|++.... ..+++..-... ..++++|
T Consensus 99 t~Le------------------------~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~I--G~gp~Arsv~ldLppF 152 (332)
T COG2255 99 TNLE------------------------EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIII--GKGPAARSIRLDLPPF 152 (332)
T ss_pred hcCC------------------------cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEE--ccCCccceEeccCCCe
Confidence 2221 23345556654311 01111110000 1222232
Q ss_pred --EEEEcCChhHHhhhcc--cceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCchhHHHHHHH
Q 045686 289 --IVFTTRSEEVCGEMGA--RRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPLALVTIGH 360 (885)
Q Consensus 289 --IivTTR~~~v~~~~~~--~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~ 360 (885)
|=-|||.--+...+.+ .-+.+++-.+.+|-.++..+.+..-..... ++-+.+|++...|-|--..-+-+
T Consensus 153 TLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~---~~~a~eIA~rSRGTPRIAnRLLr 225 (332)
T COG2255 153 TLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEID---EEAALEIARRSRGTPRIANRLLR 225 (332)
T ss_pred eEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCC---hHHHHHHHHhccCCcHHHHHHHH
Confidence 2248887655443332 246688999999999999998854443333 34589999999999965544333
No 120
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.97 E-value=0.00011 Score=80.77 Aligned_cols=179 Identities=14% Similarity=0.223 Sum_probs=100.5
Q ss_pred CCccchhHHHHHHHHHhhcCCC-eEEEEEcCCCCcHHHHHHHHHhhhccC-----CCCccEE-EEEEEcCcccHHHHHHH
Q 045686 152 GKTVGLDSIISEVWRCIEDHNE-KVIGLYGMGGVGKTTLLKKLNNKFRDT-----GHDFDLV-IWVKVSRDANLEKIQES 224 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~~~-----~~~f~~~-~wv~v~~~~~~~~~~~~ 224 (885)
.+++|.+..++.+.+.+..+.. ..+.++|++|+||||+|+.+++..... ...|... +.+.......... ..+
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-i~~ 95 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDD-IRN 95 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHH-HHH
Confidence 4689999999999999977554 588899999999999999998775321 0112111 1111111111111 111
Q ss_pred HHHHcCCCccccCCCChhHHHHHHHHHhcCCCeEEEEecCCCccc--cccccccccccccCCCCCEEEEEc-CChhHHhh
Q 045686 225 ILRRFEIPDQMWIGKDEDGRANEILSNLRGKKFVLLLDDVWERLD--LSKVGVSDLLDDSSQTGSKIVFTT-RSEEVCGE 301 (885)
Q Consensus 225 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~--~~~~~~~~~l~~~~~~gs~IivTT-R~~~v~~~ 301 (885)
+++.+... -..+++-++|+|++..... +..+...+. .....+.+|++| +...+...
T Consensus 96 l~~~~~~~------------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le---~~~~~~~~Il~~~~~~kl~~~ 154 (367)
T PRK14970 96 LIDQVRIP------------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLE---EPPAHAIFILATTEKHKIIPT 154 (367)
T ss_pred HHHHHhhc------------------cccCCcEEEEEeChhhcCHHHHHHHHHHHh---CCCCceEEEEEeCCcccCCHH
Confidence 12111100 1124556899999864321 222211111 222234555544 33333221
Q ss_pred -hcccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCchhHH
Q 045686 302 -MGARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPLAL 355 (885)
Q Consensus 302 -~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai 355 (885)
......+++.++++++....+.+.+.......+ .+.+..|++.++|.+-.+
T Consensus 155 l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~---~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 155 ILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKFE---DDALHIIAQKADGALRDA 206 (367)
T ss_pred HHhcceeEecCCccHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhCCCCHHHH
Confidence 223357899999999999999887754433222 345788899999866533
No 121
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.97 E-value=0.00011 Score=84.31 Aligned_cols=196 Identities=14% Similarity=0.140 Sum_probs=107.6
Q ss_pred CCccchhHHHHHHHHHhhcCCCe-EEEEEcCCCCcHHHHHHHHHhhhccCCCCcc-EEEEEEEcCcccHHHHHHHHHHHc
Q 045686 152 GKTVGLDSIISEVWRCIEDHNEK-VIGLYGMGGVGKTTLLKKLNNKFRDTGHDFD-LVIWVKVSRDANLEKIQESILRRF 229 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~-~~~wv~v~~~~~~~~~~~~i~~~l 229 (885)
.+++|.+..++.|.+++..++.. .+.++|+.|+||||+|+.+++........-. ...+-.+.. -.-...|...-
T Consensus 24 ~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~----c~~C~~i~~g~ 99 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGV----GEHCQAIMEGR 99 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcc----cHHHHHHhcCC
Confidence 46899999999999999776644 6889999999999999999887632100000 000000000 01111121111
Q ss_pred CCCcccc---CCCChhHHHHHHHHHh-----cCCCeEEEEecCCCccc--cccccccccccccCCCCCEEEEEc-CChhH
Q 045686 230 EIPDQMW---IGKDEDGRANEILSNL-----RGKKFVLLLDDVWERLD--LSKVGVSDLLDDSSQTGSKIVFTT-RSEEV 298 (885)
Q Consensus 230 ~~~~~~~---~~~~~~~~~~~l~~~l-----~~k~~LlVLDdv~~~~~--~~~~~~~~~l~~~~~~gs~IivTT-R~~~v 298 (885)
....-.. .....++.. .+.+.+ .+++-++|+|++..... ...+...+- ....++.+|++| ....+
T Consensus 100 h~Dv~e~~a~s~~gvd~IR-eIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLE---ePp~~~~fIl~tte~~kl 175 (598)
T PRK09111 100 HVDVLEMDAASHTGVDDIR-EIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLE---EPPPHVKFIFATTEIRKV 175 (598)
T ss_pred CCceEEecccccCCHHHHH-HHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHH---hCCCCeEEEEEeCChhhh
Confidence 0000000 111222222 222222 24566899999865422 222221111 223355665544 44444
Q ss_pred Hhhh-cccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCchhHHHHH
Q 045686 299 CGEM-GARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPLALVTI 358 (885)
Q Consensus 299 ~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~ 358 (885)
...+ .....+.+..++.++....+.+.+.......+ .+....|++.++|.+.-+...
T Consensus 176 l~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~---~eAl~lIa~~a~Gdlr~al~~ 233 (598)
T PRK09111 176 PVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVE---DEALALIARAAEGSVRDGLSL 233 (598)
T ss_pred hHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 3222 23357899999999999999888754433222 245788999999988665443
No 122
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.95 E-value=2.6e-06 Score=84.34 Aligned_cols=87 Identities=23% Similarity=0.254 Sum_probs=65.4
Q ss_pred CCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCchhh-hcccccceeeccCCcc--cccChhhhccc
Q 045686 534 PSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPEEI-GRLKNLHHLNLSNTSI--GCLPTAIKRLI 610 (885)
Q Consensus 534 ~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i-~~L~~L~~L~Ls~~~i--~~lp~~i~~L~ 610 (885)
..+..++.|+|.+|.+...+--..++.+|++|++|+|+.| .+...-.+. ..+.+|++|-|.++.+ +.....+..++
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N-~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP 146 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCN-SLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLP 146 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCC-cCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcch
Confidence 5688999999999977652222445789999999999998 443222222 3567999999999966 56666688899
Q ss_pred cccEeecCCcc
Q 045686 611 KLKVLLLDGIQ 621 (885)
Q Consensus 611 ~L~~L~l~~~~ 621 (885)
.++.|.++.|.
T Consensus 147 ~vtelHmS~N~ 157 (418)
T KOG2982|consen 147 KVTELHMSDNS 157 (418)
T ss_pred hhhhhhhccch
Confidence 99999998884
No 123
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.95 E-value=0.00013 Score=83.25 Aligned_cols=197 Identities=12% Similarity=0.109 Sum_probs=106.9
Q ss_pred CCccchhHHHHHHHHHhhcCCCe-EEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHHHcC
Q 045686 152 GKTVGLDSIISEVWRCIEDHNEK-VIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILRRFE 230 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~ 230 (885)
.++||.+..++.|.+++..++.. .+.++|+.|+||||+|+.+++..... ...+ +..+... .....|...-+
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~-~~~~---~~pCg~C----~~C~~i~~~~~ 84 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCA-QGPT---ATPCGVC----ESCVALAPNGP 84 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccc-cCCC---CCccccc----HHHHHhhcccC
Confidence 56899999999999999876654 46899999999999999998876321 1000 0001110 01111110000
Q ss_pred CCc-----cccCCCChhHHHHHHHHH-----hcCCCeEEEEecCCCcc--ccccccccccccccCCCCCEEEE-EcCChh
Q 045686 231 IPD-----QMWIGKDEDGRANEILSN-----LRGKKFVLLLDDVWERL--DLSKVGVSDLLDDSSQTGSKIVF-TTRSEE 297 (885)
Q Consensus 231 ~~~-----~~~~~~~~~~~~~~l~~~-----l~~k~~LlVLDdv~~~~--~~~~~~~~~~l~~~~~~gs~Iiv-TTR~~~ 297 (885)
... +.......++. ..+.+. ..+++-++|+|++.... ....+...+- .......+|+ ||....
T Consensus 85 ~~~dvieidaas~~gvd~i-Rel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LE---Epp~~~~fIL~tte~~k 160 (584)
T PRK14952 85 GSIDVVELDAASHGGVDDT-RELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVE---EPPEHLIFIFATTEPEK 160 (584)
T ss_pred CCceEEEeccccccCHHHH-HHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHh---cCCCCeEEEEEeCChHh
Confidence 000 00001112222 122221 13466699999986542 1222211111 2223445454 555454
Q ss_pred HHhhh-cccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCchh-HHHHHHHHHh
Q 045686 298 VCGEM-GARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPL-ALVTIGHAMA 363 (885)
Q Consensus 298 v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPL-ai~~~~~~l~ 363 (885)
+...+ .-...|.+.+++.++..+.+.+.+.......+ .+....|++.++|.+- |+..+-.++.
T Consensus 161 ll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~---~~al~~Ia~~s~GdlR~aln~Ldql~~ 225 (584)
T PRK14952 161 VLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVD---DAVYPLVIRAGGGSPRDTLSVLDQLLA 225 (584)
T ss_pred hHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 44322 23467999999999999898887754332222 2346788999999774 4445444443
No 124
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.94 E-value=0.0002 Score=73.35 Aligned_cols=191 Identities=15% Similarity=0.148 Sum_probs=109.8
Q ss_pred HHHHHHHHhhc---CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCC---CccEEEEEEEcCcccHHHHHHHHHHHcCCCc
Q 045686 160 IISEVWRCIED---HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGH---DFDLVIWVKVSRDANLEKIQESILRRFEIPD 233 (885)
Q Consensus 160 ~~~~l~~~L~~---~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~---~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~ 233 (885)
.++.+.+++.. ...+-+.|+|.+|.|||++++.+...+....+ .--.++.|.....++...++..|+.+++.+.
T Consensus 45 ~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~ 124 (302)
T PF05621_consen 45 ALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPY 124 (302)
T ss_pred HHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCccc
Confidence 34445555533 34567899999999999999999988754211 1124778888888999999999999999986
Q ss_pred cccCCCChhHHHHHHHHHhcC-CCeEEEEecCCCcccc-----ccccccccccccCCCCCEEEEEcCCh--------hHH
Q 045686 234 QMWIGKDEDGRANEILSNLRG-KKFVLLLDDVWERLDL-----SKVGVSDLLDDSSQTGSKIVFTTRSE--------EVC 299 (885)
Q Consensus 234 ~~~~~~~~~~~~~~l~~~l~~-k~~LlVLDdv~~~~~~-----~~~~~~~~l~~~~~~gs~IivTTR~~--------~v~ 299 (885)
.. ..............++. +--+||+|++.+.... .++...+-.-...-.=+-|.|-|++- +.+
T Consensus 125 ~~--~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa 202 (302)
T PF05621_consen 125 RP--RDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLA 202 (302)
T ss_pred CC--CCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHH
Confidence 42 33444444445555554 4569999999763211 11111100000111123344444432 222
Q ss_pred hhhcccceeeccCCCh-HHHHHHHHHHhc--CcccCCccchHHHHHHHHHHhCCchhHH
Q 045686 300 GEMGARRRFRVECLSP-EAALDLFRYKVG--EDVYSSHFEISNLAQTVVEECRGLPLAL 355 (885)
Q Consensus 300 ~~~~~~~~~~l~~L~~-~~~~~Lf~~~~~--~~~~~~~~~~~~~~~~I~~~c~GlPLai 355 (885)
..+ .++.+..... ++...|+..... .-....+-...++++.|...++|+.=-+
T Consensus 203 ~RF---~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l 258 (302)
T PF05621_consen 203 SRF---EPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGEL 258 (302)
T ss_pred hcc---CCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHH
Confidence 221 3455555543 345555543321 1111122234678999999999976443
No 125
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.94 E-value=0.00023 Score=78.35 Aligned_cols=173 Identities=18% Similarity=0.266 Sum_probs=97.0
Q ss_pred CCccchhHHHHHHHHHhhc-------------CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccH
Q 045686 152 GKTVGLDSIISEVWRCIED-------------HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANL 218 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~-------------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 218 (885)
.++.|+++.++++.+.+.- ...+-|.++|++|+|||++|+.+++... .. |+.++.
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~---~~-----~i~v~~---- 198 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN---AT-----FIRVVG---- 198 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhC---CC-----EEEeeh----
Confidence 3577999999999887621 3456688999999999999999998763 22 222211
Q ss_pred HHHHHHHHHHcCCCccccCCCChhHHHHHHHHH-hcCCCeEEEEecCCCccc----------c--c-ccccccc-ccc-c
Q 045686 219 EKIQESILRRFEIPDQMWIGKDEDGRANEILSN-LRGKKFVLLLDDVWERLD----------L--S-KVGVSDL-LDD-S 282 (885)
Q Consensus 219 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVLDdv~~~~~----------~--~-~~~~~~~-l~~-~ 282 (885)
..+. ... .+.. ......+.+. -...+.+|++||++.... . . .+...+. +.. .
T Consensus 199 ~~l~----~~~-------~g~~-~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~ 266 (389)
T PRK03992 199 SELV----QKF-------IGEG-ARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFD 266 (389)
T ss_pred HHHh----Hhh-------ccch-HHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccC
Confidence 1111 110 1111 1122222222 234678999999975310 0 0 0000000 000 1
Q ss_pred CCCCCEEEEEcCChhHHhh-h----cccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCch
Q 045686 283 SQTGSKIVFTTRSEEVCGE-M----GARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLP 352 (885)
Q Consensus 283 ~~~gs~IivTTR~~~v~~~-~----~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP 352 (885)
...+..||.||...+.... + .-...+.++..+.++-.++|+.++.........+ ...+++.+.|.-
T Consensus 267 ~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~----~~~la~~t~g~s 337 (389)
T PRK03992 267 PRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVD----LEELAELTEGAS 337 (389)
T ss_pred CCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCC----HHHHHHHcCCCC
Confidence 1235567777765433211 1 1245789999999999999998875443322233 455667776644
No 126
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.94 E-value=0.00011 Score=87.46 Aligned_cols=188 Identities=10% Similarity=0.106 Sum_probs=103.6
Q ss_pred CCccchhHHHHHHHHHhhcCCCe-EEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHHHcC
Q 045686 152 GKTVGLDSIISEVWRCIEDHNEK-VIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILRRFE 230 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~ 230 (885)
.++||.+..++.|.+++..++.. .+.++|+.|+||||+|+.+++..... ...... .+..+ .....|... +
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~-~~~~~~---pCg~C----~sC~~~~~g-~ 85 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCV-EGPTST---PCGEC----DSCVALAPG-G 85 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcc-cCCCCC---CCccc----HHHHHHHcC-C
Confidence 46899999999999999876654 57899999999999999998877421 110000 00000 001111100 0
Q ss_pred CCc------cccCCCChhHHHHHHHHH-----hcCCCeEEEEecCCCccc--cccccccccccccCCCCCEEEEEc-CCh
Q 045686 231 IPD------QMWIGKDEDGRANEILSN-----LRGKKFVLLLDDVWERLD--LSKVGVSDLLDDSSQTGSKIVFTT-RSE 296 (885)
Q Consensus 231 ~~~------~~~~~~~~~~~~~~l~~~-----l~~k~~LlVLDdv~~~~~--~~~~~~~~~l~~~~~~gs~IivTT-R~~ 296 (885)
... +.......++... +.+. ..++.-++|+|++..... ...+...+- .....+.+|++| ...
T Consensus 86 ~~~~dv~eidaas~~~Vd~iR~-l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LE---EpP~~~~fIl~tt~~~ 161 (824)
T PRK07764 86 PGSLDVTEIDAASHGGVDDARE-LRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVE---EPPEHLKFIFATTEPD 161 (824)
T ss_pred CCCCcEEEecccccCCHHHHHH-HHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHh---CCCCCeEEEEEeCChh
Confidence 000 0000111222222 2221 235666899999976432 122211111 222345555544 444
Q ss_pred hHHhhh-cccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCchhHH
Q 045686 297 EVCGEM-GARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPLAL 355 (885)
Q Consensus 297 ~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai 355 (885)
.+...+ .....|++..++.++...++.+.+.......+ .+....|++.++|.+..+
T Consensus 162 kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~id---~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 162 KVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVE---PGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred hhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 444322 23467899999999999999887644332222 234678999999987443
No 127
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.93 E-value=9.5e-06 Score=57.66 Aligned_cols=41 Identities=37% Similarity=0.438 Sum_probs=33.2
Q ss_pred cccceeeccCCcccccChhhhccccccEeecCCcccccccCC
Q 045686 587 KNLHHLNLSNTSIGCLPTAIKRLIKLKVLLLDGIQCHLSIPE 628 (885)
Q Consensus 587 ~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~ 628 (885)
++|++|++++|+|..+|..+++|++|++|++++|+ +.+++.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCcC
Confidence 47899999999999999889999999999999996 665553
No 128
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.92 E-value=0.00011 Score=83.52 Aligned_cols=196 Identities=11% Similarity=0.137 Sum_probs=107.8
Q ss_pred CCccchhHHHHHHHHHhhcCC-CeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHHHcC
Q 045686 152 GKTVGLDSIISEVWRCIEDHN-EKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILRRFE 230 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~~~-~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~ 230 (885)
.+++|.+..++.|.+++..++ ...+.++|+.|+||||+|+.+++..... ...+.. .++.-...+.|.....
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~-~~~~~~-------pCg~C~sC~~i~~g~h 87 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCE-TAPTGE-------PCNTCEQCRKVTQGMH 87 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhcccc-CCCCCC-------CCcccHHHHHHhcCCC
Confidence 468899999999999887765 4677789999999999999998876321 111000 0011011111111000
Q ss_pred CCcccc---CCCChhHHHHHHHHH-----hcCCCeEEEEecCCCcc--ccccccccccccccCCCCCEEEEEcCC-hhHH
Q 045686 231 IPDQMW---IGKDEDGRANEILSN-----LRGKKFVLLLDDVWERL--DLSKVGVSDLLDDSSQTGSKIVFTTRS-EEVC 299 (885)
Q Consensus 231 ~~~~~~---~~~~~~~~~~~l~~~-----l~~k~~LlVLDdv~~~~--~~~~~~~~~~l~~~~~~gs~IivTTR~-~~v~ 299 (885)
...... .....++. +.+.+. ..+++-++|+|++.... ....+...+- .......+|++|.+ ..+.
T Consensus 88 pDv~eId~a~~~~Id~i-R~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LE---EP~~~~ifILaTt~~~kll 163 (624)
T PRK14959 88 VDVVEIDGASNRGIDDA-KRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLE---EPPARVTFVLATTEPHKFP 163 (624)
T ss_pred CceEEEecccccCHHHH-HHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhh---ccCCCEEEEEecCChhhhh
Confidence 000000 01112221 122222 23566799999996542 1222211111 12234555555544 4443
Q ss_pred hhh-cccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCch-hHHHHHHHHH
Q 045686 300 GEM-GARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLP-LALVTIGHAM 362 (885)
Q Consensus 300 ~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP-Lai~~~~~~l 362 (885)
..+ .....+++.+++.++....+.+.+.......+ .+.+..|++.++|.+ .|+..+..++
T Consensus 164 ~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~id---~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 164 VTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYD---PAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 222 22357899999999999999887754332222 345788999999954 6777766554
No 129
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.91 E-value=0.00019 Score=82.64 Aligned_cols=199 Identities=12% Similarity=0.131 Sum_probs=105.2
Q ss_pred CCccchhHHHHHHHHHhhcCCC-eEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEE-EcCcccHHHHHHHHHHHc
Q 045686 152 GKTVGLDSIISEVWRCIEDHNE-KVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVK-VSRDANLEKIQESILRRF 229 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~-v~~~~~~~~~~~~i~~~l 229 (885)
.++||.+..++.|.+++..+.. ..+.++|+.|+||||+|+.+++..... ...+.-.|.. +....+.-...+.+...-
T Consensus 16 ~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~-~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~ 94 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQ-RMIDDPVYLQEVTEPCGECESCRDFDAGT 94 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCC-CcCCccccccccCCCCccCHHHHHHhccC
Confidence 4689999999999999877665 447899999999999999998876321 1110000110 000011111111111100
Q ss_pred CCCcccc---CCCChhHHHHHHHHHh-----cCCCeEEEEecCCCccc--cccccccccccccCCCCCEEEE-EcCChhH
Q 045686 230 EIPDQMW---IGKDEDGRANEILSNL-----RGKKFVLLLDDVWERLD--LSKVGVSDLLDDSSQTGSKIVF-TTRSEEV 298 (885)
Q Consensus 230 ~~~~~~~---~~~~~~~~~~~l~~~l-----~~k~~LlVLDdv~~~~~--~~~~~~~~~l~~~~~~gs~Iiv-TTR~~~v 298 (885)
....... .....+++.. +.+.+ .+++-++|+||++.... ...+...+- .....+.+|+ |++...+
T Consensus 95 ~~n~~~~d~~s~~~vd~Ir~-l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LE---ePp~~tv~IL~t~~~~kL 170 (620)
T PRK14954 95 SLNISEFDAASNNSVDDIRQ-LRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLE---EPPPHAIFIFATTELHKI 170 (620)
T ss_pred CCCeEEecccccCCHHHHHH-HHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHh---CCCCCeEEEEEeCChhhh
Confidence 0000000 1111233332 22222 34566899999865432 222211111 2222344444 4444444
Q ss_pred Hhh-hcccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCchh-HHHHH
Q 045686 299 CGE-MGARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPL-ALVTI 358 (885)
Q Consensus 299 ~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPL-ai~~~ 358 (885)
... ......+++.+++.++....+.+.+.......+ .+.++.|++.++|..- |+..+
T Consensus 171 l~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I~---~eal~~La~~s~Gdlr~al~eL 229 (620)
T PRK14954 171 PATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQID---ADALQLIARKAQGSMRDAQSIL 229 (620)
T ss_pred hHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhCCCHHHHHHHH
Confidence 332 233467999999999998888877643322222 3457889999999554 44433
No 130
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.91 E-value=0.00011 Score=82.00 Aligned_cols=160 Identities=19% Similarity=0.192 Sum_probs=96.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhhccCCCCcc-EEEEEEEcCcccHHHHHHHHHHHcCCCccccCCCChhHHHHHHHHH
Q 045686 173 EKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFD-LVIWVKVSRDANLEKIQESILRRFEIPDQMWIGKDEDGRANEILSN 251 (885)
Q Consensus 173 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~-~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 251 (885)
..-+.|+|++|+|||+|++.+++.... .+.. .++|++. .+...++...+.. ...+ .+.+.
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~--~~~~~~v~yi~~------~~f~~~~~~~~~~-------~~~~----~f~~~ 190 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQ--NEPDLRVMYITS------EKFLNDLVDSMKE-------GKLN----EFREK 190 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHH--hCCCCeEEEEEH------HHHHHHHHHHHhc-------ccHH----HHHHH
Confidence 345899999999999999999998742 2222 4566653 3445555554421 1122 23333
Q ss_pred hcCCCeEEEEecCCCccccc----cccccccccccCCCCCEEEEEcC-ChhH--------HhhhcccceeeccCCChHHH
Q 045686 252 LRGKKFVLLLDDVWERLDLS----KVGVSDLLDDSSQTGSKIVFTTR-SEEV--------CGEMGARRRFRVECLSPEAA 318 (885)
Q Consensus 252 l~~k~~LlVLDdv~~~~~~~----~~~~~~~l~~~~~~gs~IivTTR-~~~v--------~~~~~~~~~~~l~~L~~~~~ 318 (885)
++.+.-+|++||+....+-. .+...+. .....|..||+||. ...- ...+.....+.+++.+.++-
T Consensus 191 ~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n--~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r 268 (440)
T PRK14088 191 YRKKVDVLLIDDVQFLIGKTGVQTELFHTFN--ELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETR 268 (440)
T ss_pred HHhcCCEEEEechhhhcCcHHHHHHHHHHHH--HHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHH
Confidence 33456789999997542211 1111111 11233567888884 3321 22233445789999999999
Q ss_pred HHHHHHHhcCcccCCccchHHHHHHHHHHhCCchhHHH
Q 045686 319 LDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPLALV 356 (885)
Q Consensus 319 ~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~ 356 (885)
.+++++.+......-+ +++..-|++.+.|.--.+.
T Consensus 269 ~~IL~~~~~~~~~~l~---~ev~~~Ia~~~~~~~R~L~ 303 (440)
T PRK14088 269 KKIARKMLEIEHGELP---EEVLNFVAENVDDNLRRLR 303 (440)
T ss_pred HHHHHHHHHhcCCCCC---HHHHHHHHhccccCHHHHH
Confidence 9999988864433333 3468888888887655443
No 131
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.91 E-value=0.00058 Score=72.77 Aligned_cols=173 Identities=11% Similarity=0.179 Sum_probs=108.7
Q ss_pred CCCCccchhHHHHHHHHHhhc----CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHH
Q 045686 150 PIGKTVGLDSIISEVWRCIED----HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESI 225 (885)
Q Consensus 150 ~~~~~vgr~~~~~~l~~~L~~----~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 225 (885)
+++..+||+.+++.+.+++.. ...+-+-|.|-+|.|||.+...++.+.......| .++++.+..-.....++..|
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~-~~v~inc~sl~~~~aiF~kI 226 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSP-VTVYINCTSLTEASAIFKKI 226 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccc-eeEEEeeccccchHHHHHHH
Confidence 346688999999999999843 5678889999999999999999998875321222 45777776555666777777
Q ss_pred HHHc--CCCccccCCCChhHHHHHHHHHhcCC--CeEEEEecCCCccc--cccccccccccccCCCCCEEEEEcCC--hh
Q 045686 226 LRRF--EIPDQMWIGKDEDGRANEILSNLRGK--KFVLLLDDVWERLD--LSKVGVSDLLDDSSQTGSKIVFTTRS--EE 297 (885)
Q Consensus 226 ~~~l--~~~~~~~~~~~~~~~~~~l~~~l~~k--~~LlVLDdv~~~~~--~~~~~~~~~l~~~~~~gs~IivTTR~--~~ 297 (885)
...+ +.. .+....+....+.....+. .+|+|+|+.+.-.. -..+...|.+ ..-+++++|+.--- -+
T Consensus 227 ~~~~~q~~~----s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFew--p~lp~sr~iLiGiANslD 300 (529)
T KOG2227|consen 227 FSSLLQDLV----SPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEW--PKLPNSRIILIGIANSLD 300 (529)
T ss_pred HHHHHHHhc----CCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhc--ccCCcceeeeeeehhhhh
Confidence 7665 111 1222355566666666543 58999999864311 1111111111 23346666653321 11
Q ss_pred HH----hhh-----cccceeeccCCChHHHHHHHHHHhcCc
Q 045686 298 VC----GEM-----GARRRFRVECLSPEAALDLFRYKVGED 329 (885)
Q Consensus 298 v~----~~~-----~~~~~~~l~~L~~~~~~~Lf~~~~~~~ 329 (885)
.. -.+ -....+...+.+.++-.++|..+....
T Consensus 301 lTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~ 341 (529)
T KOG2227|consen 301 LTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEE 341 (529)
T ss_pred HHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcc
Confidence 11 111 123567889999999999999888543
No 132
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.91 E-value=0.00012 Score=80.65 Aligned_cols=173 Identities=17% Similarity=0.251 Sum_probs=96.2
Q ss_pred CccchhHHHHHHHHHhhc-------------CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHH
Q 045686 153 KTVGLDSIISEVWRCIED-------------HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLE 219 (885)
Q Consensus 153 ~~vgr~~~~~~l~~~L~~-------------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 219 (885)
++.|.+..+++|.+.+.- ...+-+.++|++|+|||++|+.+++... ..| +.+...
T Consensus 184 DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~---~~f-----i~V~~s---- 251 (438)
T PTZ00361 184 DIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETS---ATF-----LRVVGS---- 251 (438)
T ss_pred HhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhC---CCE-----EEEecc----
Confidence 456899999988887631 2456788999999999999999999763 333 222111
Q ss_pred HHHHHHHHHcCCCccccCCCChhHHHHHHHHHhcCCCeEEEEecCCCcccc------------cccccccc--ccc-cCC
Q 045686 220 KIQESILRRFEIPDQMWIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDL------------SKVGVSDL--LDD-SSQ 284 (885)
Q Consensus 220 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~------------~~~~~~~~--l~~-~~~ 284 (885)
.+. ... .+.........+.......+.+|++|+++....- ......+. +.. ...
T Consensus 252 eL~----~k~-------~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~ 320 (438)
T PTZ00361 252 ELI----QKY-------LGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSR 320 (438)
T ss_pred hhh----hhh-------cchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhccc
Confidence 111 110 1111111222222333457889999997532100 00000000 000 123
Q ss_pred CCCEEEEEcCChhHHhh-h----cccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCch
Q 045686 285 TGSKIVFTTRSEEVCGE-M----GARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLP 352 (885)
Q Consensus 285 ~gs~IivTTR~~~v~~~-~----~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP 352 (885)
.+.+||+||...+.... + .....+.+...+.++-.++|..++.........++ ..++..+.|+-
T Consensus 321 ~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl----~~la~~t~g~s 389 (438)
T PTZ00361 321 GDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDL----EEFIMAKDELS 389 (438)
T ss_pred CCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCH----HHHHHhcCCCC
Confidence 35678888876544322 1 23457899999999999999987754433333343 44555555544
No 133
>PRK06620 hypothetical protein; Validated
Probab=97.90 E-value=7.3e-05 Score=74.72 Aligned_cols=136 Identities=10% Similarity=0.014 Sum_probs=81.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHHHcCCCccccCCCChhHHHHHHHHHhc
Q 045686 174 KVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILRRFEIPDQMWIGKDEDGRANEILSNLR 253 (885)
Q Consensus 174 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 253 (885)
+.+.|+|++|+|||+|++.+++... . .++. ..+. . + +..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~---~-----~~~~--~~~~--------------------~---~-------~~~- 83 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN---A-----YIIK--DIFF--------------------N---E-------EIL- 83 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC---C-----EEcc--hhhh--------------------c---h-------hHH-
Confidence 5689999999999999999877652 1 1111 0000 0 0 011
Q ss_pred CCCeEEEEecCCCccccccccccccccccCCCCCEEEEEcCChh-------HHhhhcccceeeccCCChHHHHHHHHHHh
Q 045686 254 GKKFVLLLDDVWERLDLSKVGVSDLLDDSSQTGSKIVFTTRSEE-------VCGEMGARRRFRVECLSPEAALDLFRYKV 326 (885)
Q Consensus 254 ~k~~LlVLDdv~~~~~~~~~~~~~~l~~~~~~gs~IivTTR~~~-------v~~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 326 (885)
+..-++++||+....+ ..+...+. .....|..||+|++... +...+.....++++++++++-..++.+.+
T Consensus 84 ~~~d~lliDdi~~~~~-~~lf~l~N--~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~ 160 (214)
T PRK06620 84 EKYNAFIIEDIENWQE-PALLHIFN--IINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHF 160 (214)
T ss_pred hcCCEEEEeccccchH-HHHHHHHH--HHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHH
Confidence 1335788999973211 11111110 02245778999987532 33444455689999999999999998887
Q ss_pred cCcccCCccchHHHHHHHHHHhCCchhHHH
Q 045686 327 GEDVYSSHFEISNLAQTVVEECRGLPLALV 356 (885)
Q Consensus 327 ~~~~~~~~~~~~~~~~~I~~~c~GlPLai~ 356 (885)
.......+ +++..-|++.+.|.--.+.
T Consensus 161 ~~~~l~l~---~ev~~~L~~~~~~d~r~l~ 187 (214)
T PRK06620 161 SISSVTIS---RQIIDFLLVNLPREYSKII 187 (214)
T ss_pred HHcCCCCC---HHHHHHHHHHccCCHHHHH
Confidence 54332232 3567888888887655544
No 134
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.90 E-value=0.00018 Score=70.80 Aligned_cols=160 Identities=16% Similarity=0.160 Sum_probs=88.0
Q ss_pred HHHHHhhcCCC-eEEEEEcCCCCcHHHHHHHHHhhhccCC-------------------CCccEEEEEEEc-CcccHHHH
Q 045686 163 EVWRCIEDHNE-KVIGLYGMGGVGKTTLLKKLNNKFRDTG-------------------HDFDLVIWVKVS-RDANLEKI 221 (885)
Q Consensus 163 ~l~~~L~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~~~~-------------------~~f~~~~wv~v~-~~~~~~~~ 221 (885)
.+.+.+..++. ..+.++|+.|+||||+|+.+........ .+.+. .++... .....+.
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~-~~~~~~~~~~~~~~- 80 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDL-HRLEPEGQSIKVDQ- 80 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcE-EEeccccCcCCHHH-
Confidence 45556655555 6788999999999999999988763210 11111 111110 0111111
Q ss_pred HHHHHHHcCCCccccCCCChhHHHHHHHHHhcCCCeEEEEecCCCccc--cccccccccccccCCCCCEEEEEcCCh-hH
Q 045686 222 QESILRRFEIPDQMWIGKDEDGRANEILSNLRGKKFVLLLDDVWERLD--LSKVGVSDLLDDSSQTGSKIVFTTRSE-EV 298 (885)
Q Consensus 222 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~--~~~~~~~~~l~~~~~~gs~IivTTR~~-~v 298 (885)
.+++.+.+... -..+.+-++|+||+..... ...+...+- .....+.+|++|++. .+
T Consensus 81 i~~i~~~~~~~------------------~~~~~~kviiide~~~l~~~~~~~Ll~~le---~~~~~~~~il~~~~~~~l 139 (188)
T TIGR00678 81 VRELVEFLSRT------------------PQESGRRVVIIEDAERMNEAAANALLKTLE---EPPPNTLFILITPSPEKL 139 (188)
T ss_pred HHHHHHHHccC------------------cccCCeEEEEEechhhhCHHHHHHHHHHhc---CCCCCeEEEEEECChHhC
Confidence 11111111100 0124567899999865422 222211111 233456666666543 22
Q ss_pred Hhhh-cccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCchhH
Q 045686 299 CGEM-GARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPLA 354 (885)
Q Consensus 299 ~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLa 354 (885)
...+ .....+.+.+++.++..+.+.+. + . + .+.+..|++.++|.|..
T Consensus 140 ~~~i~sr~~~~~~~~~~~~~~~~~l~~~-g---i--~---~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 140 LPTIRSRCQVLPFPPLSEEALLQWLIRQ-G---I--S---EEAAELLLALAGGSPGA 187 (188)
T ss_pred hHHHHhhcEEeeCCCCCHHHHHHHHHHc-C---C--C---HHHHHHHHHHcCCCccc
Confidence 2221 22357899999999999888776 2 1 1 34588999999998853
No 135
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.88 E-value=0.00018 Score=83.04 Aligned_cols=188 Identities=15% Similarity=0.152 Sum_probs=102.9
Q ss_pred CCccchhHHHHHHHHHhhcCCC-eEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHHHcC
Q 045686 152 GKTVGLDSIISEVWRCIEDHNE-KVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILRRFE 230 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~ 230 (885)
.+++|.+..++.|.+++..++. ..+.++|+.|+||||+|+.++...-....... +-.+... ... .+
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~---~~pC~~C-------~~~---~~ 84 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDL---LEPCQEC-------IEN---VN 84 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCC---CCchhHH-------HHh---hc
Confidence 4689999999999999977654 45678999999999999999876531100000 0000000 000 01
Q ss_pred CCccc--c---CCCChhHHHHHHHHHh-----cCCCeEEEEecCCCcc--ccccccccccccccCCCCCEEE-EEcCChh
Q 045686 231 IPDQM--W---IGKDEDGRANEILSNL-----RGKKFVLLLDDVWERL--DLSKVGVSDLLDDSSQTGSKIV-FTTRSEE 297 (885)
Q Consensus 231 ~~~~~--~---~~~~~~~~~~~l~~~l-----~~k~~LlVLDdv~~~~--~~~~~~~~~~l~~~~~~gs~Ii-vTTR~~~ 297 (885)
....- . .....++ .+.+.+.+ .+++-++|+|++.... .+..+...+ . .....+.+| +||+...
T Consensus 85 ~~~Dvieidaasn~~vd~-IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtL--E-EPP~~tifILaTte~~K 160 (725)
T PRK07133 85 NSLDIIEMDAASNNGVDE-IRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTL--E-EPPKHVIFILATTEVHK 160 (725)
T ss_pred CCCcEEEEeccccCCHHH-HHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHh--h-cCCCceEEEEEcCChhh
Confidence 00000 0 0011221 22232222 2566799999986432 122221111 1 222234444 4555554
Q ss_pred HHhh-hcccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCchh-HHHHHH
Q 045686 298 VCGE-MGARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPL-ALVTIG 359 (885)
Q Consensus 298 v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPL-ai~~~~ 359 (885)
+... ......+.+.+++.++....+...+.......+ .+.+..|++.++|.+- |+..+-
T Consensus 161 Ll~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~id---~eAl~~LA~lS~GslR~AlslLe 221 (725)
T PRK07133 161 IPLTILSRVQRFNFRRISEDEIVSRLEFILEKENISYE---KNALKLIAKLSSGSLRDALSIAE 221 (725)
T ss_pred hhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHH
Confidence 4332 223468999999999999998876643322222 2347889999998765 444333
No 136
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.86 E-value=0.00015 Score=75.51 Aligned_cols=45 Identities=27% Similarity=0.367 Sum_probs=33.2
Q ss_pred CccchhHHHHHHHHHh---h------------cCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 045686 153 KTVGLDSIISEVWRCI---E------------DHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 153 ~~vgr~~~~~~l~~~L---~------------~~~~~vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
+++|.+..+++|.+.. . .+...-+.++|++|+||||+|+.+++..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHH
Confidence 4788887776665432 1 1234567899999999999999998765
No 137
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.86 E-value=0.00023 Score=73.78 Aligned_cols=169 Identities=17% Similarity=0.193 Sum_probs=106.2
Q ss_pred CCccchhHHHHHHHHHhhcCC---CeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHHH
Q 045686 152 GKTVGLDSIISEVWRCIEDHN---EKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILRR 228 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~~~---~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~ 228 (885)
+.+.+|+.++..+..++.+.. +..|-|.|-.|.|||.+++++.+.... ..+|+++-+.++.+.++..|+.+
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~------~~vw~n~~ecft~~~lle~IL~~ 79 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNL------ENVWLNCVECFTYAILLEKILNK 79 (438)
T ss_pred cCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCC------cceeeehHHhccHHHHHHHHHHH
Confidence 457799999999999996533 345688999999999999999987732 26899999999999999999999
Q ss_pred cCCCccccCCCC-----hhHHHHHHHH--Hh--cCCCeEEEEecCCCcccccccccccc--ccccCCCCCEEEEEcCCh-
Q 045686 229 FEIPDQMWIGKD-----EDGRANEILS--NL--RGKKFVLLLDDVWERLDLSKVGVSDL--LDDSSQTGSKIVFTTRSE- 296 (885)
Q Consensus 229 l~~~~~~~~~~~-----~~~~~~~l~~--~l--~~k~~LlVLDdv~~~~~~~~~~~~~~--l~~~~~~gs~IivTTR~~- 296 (885)
.+....+..... ..+....+.+ .. +++.++||||+++.-.|..+...+.. +.+......-+|+++-..
T Consensus 80 ~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~ 159 (438)
T KOG2543|consen 80 SQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPSC 159 (438)
T ss_pred hccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEecccc
Confidence 873321101111 1112222222 11 24689999999987766665432211 111122223333333321
Q ss_pred h-H-Hhhhcc--cceeeccCCChHHHHHHHHHHh
Q 045686 297 E-V-CGEMGA--RRRFRVECLSPEAALDLFRYKV 326 (885)
Q Consensus 297 ~-v-~~~~~~--~~~~~l~~L~~~~~~~Lf~~~~ 326 (885)
+ . ...++. ..++....-+.+|...++.+.-
T Consensus 160 e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~ 193 (438)
T KOG2543|consen 160 EKQYLINTGTLEIVVLHFPQYSVEETQVILSRDN 193 (438)
T ss_pred HHHhhcccCCCCceEEecCCCCHHHHHHHHhcCC
Confidence 1 1 111232 2456778889999988886533
No 138
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.85 E-value=4e-05 Score=82.15 Aligned_cols=61 Identities=23% Similarity=0.253 Sum_probs=32.3
Q ss_pred CCcccEEecCCCCCCCcCchhhhcccccceeeccCC-cccccChhhhccccccEeecCCcccccccCC
Q 045686 562 MDALEVLDLSYNLDLNQLPEEIGRLKNLHHLNLSNT-SIGCLPTAIKRLIKLKVLLLDGIQCHLSIPE 628 (885)
Q Consensus 562 l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~Ls~~-~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~ 628 (885)
+.++++|++++| .++.+|. -..+|+.|++++| .+..+|..+ ..+|++|++++|..+..+|.
T Consensus 51 ~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 51 ARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred hcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc
Confidence 455666666666 5555551 1224666666654 445555433 24566666666644555553
No 139
>CHL00181 cbbX CbbX; Provisional
Probab=97.84 E-value=0.00032 Score=73.47 Aligned_cols=158 Identities=13% Similarity=0.177 Sum_probs=80.6
Q ss_pred CccchhHHHHHHHHHh---h------------cCCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCccc
Q 045686 153 KTVGLDSIISEVWRCI---E------------DHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDAN 217 (885)
Q Consensus 153 ~~vgr~~~~~~l~~~L---~------------~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~ 217 (885)
+++|.++.+++|.++. . ......+.++|++|+||||+|+.+++..... +.-...-|+.++.
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~-g~~~~~~~~~v~~--- 99 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKL-GYIKKGHLLTVTR--- 99 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHc-CCCCCCceEEecH---
Confidence 3677766666554432 1 0123457889999999999999998865321 1111112444442
Q ss_pred HHHHHHHHHHHcCCCccccCCCChhHHHHHHHHHhcCCCeEEEEecCCCcc------cccc--ccccccccccCCCCCEE
Q 045686 218 LEKIQESILRRFEIPDQMWIGKDEDGRANEILSNLRGKKFVLLLDDVWERL------DLSK--VGVSDLLDDSSQTGSKI 289 (885)
Q Consensus 218 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~------~~~~--~~~~~~l~~~~~~gs~I 289 (885)
..+.... .| .........+.+. ..-+|++|++.... ++.. ....+.+-+....+..|
T Consensus 100 -~~l~~~~---~g--------~~~~~~~~~l~~a---~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~v 164 (287)
T CHL00181 100 -DDLVGQY---IG--------HTAPKTKEVLKKA---MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVV 164 (287)
T ss_pred -HHHHHHH---hc--------cchHHHHHHHHHc---cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEE
Confidence 1222111 11 1111111222222 23499999996421 1110 00001100122334567
Q ss_pred EEEcCChhHHhhh--------cccceeeccCCChHHHHHHHHHHhcCc
Q 045686 290 VFTTRSEEVCGEM--------GARRRFRVECLSPEAALDLFRYKVGED 329 (885)
Q Consensus 290 ivTTR~~~v~~~~--------~~~~~~~l~~L~~~~~~~Lf~~~~~~~ 329 (885)
|+++....+.... .....+.+++++.+|..+++...+...
T Consensus 165 I~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~ 212 (287)
T CHL00181 165 IFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQ 212 (287)
T ss_pred EEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHh
Confidence 7777543332111 123578999999999999998887543
No 140
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.84 E-value=0.00032 Score=78.93 Aligned_cols=191 Identities=12% Similarity=0.151 Sum_probs=101.3
Q ss_pred CCccchhHHHHHHHHHhhcCCC-eEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHH----HHH
Q 045686 152 GKTVGLDSIISEVWRCIEDHNE-KVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQE----SIL 226 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~----~i~ 226 (885)
.+++|.+..++.+.+++..+.. ..+.++|+.|+||||+|+.++.......... .-.+....+-..+.. ++.
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~----~~pc~~c~nc~~i~~g~~~d~~ 91 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQE----GEPCGKCENCVEIDKGSFPDLI 91 (486)
T ss_pred HHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCC----CCCCCccHHHHHHhcCCCCcEE
Confidence 4688999999999999977554 4567899999999999999987653100000 000000000000000 000
Q ss_pred HHcCCCccccCCCChhHHHHHHHHHh-----cCCCeEEEEecCCCccc--cccccccccccccCCCCCEEEE-EcCChhH
Q 045686 227 RRFEIPDQMWIGKDEDGRANEILSNL-----RGKKFVLLLDDVWERLD--LSKVGVSDLLDDSSQTGSKIVF-TTRSEEV 298 (885)
Q Consensus 227 ~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVLDdv~~~~~--~~~~~~~~~l~~~~~~gs~Iiv-TTR~~~v 298 (885)
.+... .....++ .+.+.+.. .+++-++|+|++..... ...+...+. .......+|+ ||+...+
T Consensus 92 -eidaa----s~~gvd~-ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LE---epp~~~v~Il~tt~~~kl 162 (486)
T PRK14953 92 -EIDAA----SNRGIDD-IRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLE---EPPPRTIFILCTTEYDKI 162 (486)
T ss_pred -EEeCc----cCCCHHH-HHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHh---cCCCCeEEEEEECCHHHH
Confidence 00000 0111111 12222222 34667999999864421 122211111 2222344444 4444333
Q ss_pred Hhh-hcccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCchhHHHHH
Q 045686 299 CGE-MGARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPLALVTI 358 (885)
Q Consensus 299 ~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~ 358 (885)
... ......+.+.+++.++....+.+.+.......+ .+.+..|++.++|.+..+...
T Consensus 163 ~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~id---~~al~~La~~s~G~lr~al~~ 220 (486)
T PRK14953 163 PPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYE---EKALDLLAQASEGGMRDAASL 220 (486)
T ss_pred HHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 322 223357899999999999998887754332222 234778889999977655443
No 141
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.83 E-value=0.00023 Score=85.76 Aligned_cols=155 Identities=14% Similarity=0.170 Sum_probs=88.9
Q ss_pred CCccchhHHHHHHHHHhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhccCC---CCccEEEE-EEEcCcccHHHHHHHHHH
Q 045686 152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTG---HDFDLVIW-VKVSRDANLEKIQESILR 227 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~---~~f~~~~w-v~v~~~~~~~~~~~~i~~ 227 (885)
.++|||+.++.++++.|......-+.++|++|+||||+|+.++.+..... .-....+| +..+. + .
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~------l----~- 255 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGL------L----Q- 255 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhh------h----h-
Confidence 56899999999999999776666777999999999999999998763210 01112222 21111 0 0
Q ss_pred HcCCCccccCCCChhHHHHHHHHHhc--CCCeEEEEecCCCccc------ccc---ccccccccccCCCCCEEEEEcCCh
Q 045686 228 RFEIPDQMWIGKDEDGRANEILSNLR--GKKFVLLLDDVWERLD------LSK---VGVSDLLDDSSQTGSKIVFTTRSE 296 (885)
Q Consensus 228 ~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVLDdv~~~~~------~~~---~~~~~~l~~~~~~gs~IivTTR~~ 296 (885)
.+.. .....+.....+.+.+. +++.+|++|++..... -.+ +..+. .....-++|-+|...
T Consensus 256 -ag~~----~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~----l~~G~l~~IgaTT~~ 326 (852)
T TIGR03345 256 -AGAS----VKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPA----LARGELRTIAATTWA 326 (852)
T ss_pred -cccc----cchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHH----hhCCCeEEEEecCHH
Confidence 0000 11122233333333222 4689999999865321 111 11111 122235666666553
Q ss_pred hHHhh-------hcccceeeccCCChHHHHHHHHHHh
Q 045686 297 EVCGE-------MGARRRFRVECLSPEAALDLFRYKV 326 (885)
Q Consensus 297 ~v~~~-------~~~~~~~~l~~L~~~~~~~Lf~~~~ 326 (885)
+.... ..-...+.+++++.+++.++++...
T Consensus 327 e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~ 363 (852)
T TIGR03345 327 EYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLA 363 (852)
T ss_pred HHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHH
Confidence 32111 1122578999999999999975444
No 142
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.82 E-value=9.7e-05 Score=74.26 Aligned_cols=181 Identities=10% Similarity=0.079 Sum_probs=108.2
Q ss_pred CCccchhHHHHHHHHHhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEE-EEEEEcCcccHHHHHHHHHHHcC
Q 045686 152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLV-IWVKVSRDANLEKIQESILRRFE 230 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~-~wv~v~~~~~~~~~~~~i~~~l~ 230 (885)
.+++|.+..++-|.+.+.....+....+|++|.|||+-|..++...-.. +-|.+. .-.++|......-+-..
T Consensus 36 de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~-~~~~~rvl~lnaSderGisvvr~K------ 108 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCE-QLFPCRVLELNASDERGISVVREK------ 108 (346)
T ss_pred HhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCc-cccccchhhhcccccccccchhhh------
Confidence 4678999999999999988778999999999999999999998876432 344433 22344443222200000
Q ss_pred CCccccCCCChhHHHHHHHHHh--cCCC-eEEEEecCCCc--cccccccccccccccCCCCCEEEEEcCChh-HHhhhc-
Q 045686 231 IPDQMWIGKDEDGRANEILSNL--RGKK-FVLLLDDVWER--LDLSKVGVSDLLDDSSQTGSKIVFTTRSEE-VCGEMG- 303 (885)
Q Consensus 231 ~~~~~~~~~~~~~~~~~l~~~l--~~k~-~LlVLDdv~~~--~~~~~~~~~~~l~~~~~~gs~IivTTR~~~-v~~~~~- 303 (885)
..+.........+.. ..++ -++|||+++.. ..|.++....- .....++.|++|...+ +...+.
T Consensus 109 -------ik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE---~~s~~trFiLIcnylsrii~pi~S 178 (346)
T KOG0989|consen 109 -------IKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTME---DFSRTTRFILICNYLSRIIRPLVS 178 (346)
T ss_pred -------hcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHh---ccccceEEEEEcCChhhCChHHHh
Confidence 001111110000000 0123 58899999865 44555533322 3334556555554432 222111
Q ss_pred ccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCch
Q 045686 304 ARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLP 352 (885)
Q Consensus 304 ~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP 352 (885)
-...|...+|.+++...-++..+..++...++ +..+.|++.++|--
T Consensus 179 RC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~---~al~~I~~~S~GdL 224 (346)
T KOG0989|consen 179 RCQKFRFKKLKDEDIVDRLEKIASKEGVDIDD---DALKLIAKISDGDL 224 (346)
T ss_pred hHHHhcCCCcchHHHHHHHHHHHHHhCCCCCH---HHHHHHHHHcCCcH
Confidence 22468899999999999999888766554443 34788999998843
No 143
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.82 E-value=0.00035 Score=80.89 Aligned_cols=178 Identities=12% Similarity=0.221 Sum_probs=103.6
Q ss_pred CCccchhHHHHHHHHHhhcCCCe-EEEEEcCCCCcHHHHHHHHHhhhccC--------------------CCCccEEEEE
Q 045686 152 GKTVGLDSIISEVWRCIEDHNEK-VIGLYGMGGVGKTTLLKKLNNKFRDT--------------------GHDFDLVIWV 210 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~~~--------------------~~~f~~~~wv 210 (885)
.+++|.+..++.|..++..+... .+.++|+.|+||||+|+.++...... ..+|+. ..+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~-~~l 95 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI-HEL 95 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce-EEe
Confidence 46899999999999999876654 57899999999999999988765311 012221 111
Q ss_pred EEcCcccHHHHHHHHHHHcCCCccccCCCChhHHHHHHHHHhcCCCeEEEEecCCCccc--cccccccccccccCCCCCE
Q 045686 211 KVSRDANLEKIQESILRRFEIPDQMWIGKDEDGRANEILSNLRGKKFVLLLDDVWERLD--LSKVGVSDLLDDSSQTGSK 288 (885)
Q Consensus 211 ~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~--~~~~~~~~~l~~~~~~gs~ 288 (885)
.......+..+. +++.++... -..+++-++|+|++..... ...+...+- ....++.
T Consensus 96 d~~~~~~vd~Ir-~li~~~~~~------------------P~~~~~KVvIIdea~~Ls~~a~naLLK~LE---epp~~ti 153 (614)
T PRK14971 96 DAASNNSVDDIR-NLIEQVRIP------------------PQIGKYKIYIIDEVHMLSQAAFNAFLKTLE---EPPSYAI 153 (614)
T ss_pred cccccCCHHHHH-HHHHHHhhC------------------cccCCcEEEEEECcccCCHHHHHHHHHHHh---CCCCCeE
Confidence 111111111111 111111100 0124566889999875432 222222111 2223455
Q ss_pred EEE-EcCChhHHhh-hcccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCchhHH
Q 045686 289 IVF-TTRSEEVCGE-MGARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPLAL 355 (885)
Q Consensus 289 Iiv-TTR~~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai 355 (885)
+|+ ||+...+... ......+++.++++++....+.+.+.......+ .+.+..|++.+||..--+
T Consensus 154 fIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~---~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 154 FILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAE---PEALNVIAQKADGGMRDA 219 (614)
T ss_pred EEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 554 5454444432 223467899999999999999887754433322 235788999999966544
No 144
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.81 E-value=8.4e-05 Score=71.61 Aligned_cols=112 Identities=20% Similarity=0.213 Sum_probs=68.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--ccEEEEEEEcCcccHHHHHHHHHHHcCCCccccCCCChhHHHHHH
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FDLVIWVKVSRDANLEKIQESILRRFEIPDQMWIGKDEDGRANEI 248 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l 248 (885)
.+..+++|+|+.|+|||||++.++.-..+..+. ++..-...+.+... -+..+...-.+
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~--------------------LSgGq~qrv~l 82 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYID--------------------LSGGELQRVAI 82 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCC--------------------CCHHHHHHHHH
Confidence 567899999999999999999999876432221 11110001111111 12334455567
Q ss_pred HHHhcCCCeEEEEecCCCccccccccccc-cccccCCC-CCEEEEEcCChhHHhhh
Q 045686 249 LSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQT-GSKIVFTTRSEEVCGEM 302 (885)
Q Consensus 249 ~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~-gs~IivTTR~~~v~~~~ 302 (885)
.+.+..++-++++|+.....|........ .+...... +..||++|++.+....+
T Consensus 83 aral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~ 138 (177)
T cd03222 83 AAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYL 138 (177)
T ss_pred HHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHh
Confidence 78888899999999998876654331111 11112223 37899999998765543
No 145
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.81 E-value=0.00015 Score=78.76 Aligned_cols=108 Identities=19% Similarity=0.146 Sum_probs=71.3
Q ss_pred CCccchhHHHHHHHHHhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHHHcCC
Q 045686 152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILRRFEI 231 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~ 231 (885)
.+.++.++..+.+...|.. .+.+.++|++|+|||++|+.+++.... ...++.+.||++++.++..+....+.- .+.
T Consensus 175 ~d~~i~e~~le~l~~~L~~--~~~iil~GppGtGKT~lA~~la~~l~~-~~~~~~v~~VtFHpsySYeDFI~G~rP-~~v 250 (459)
T PRK11331 175 NDLFIPETTIETILKRLTI--KKNIILQGPPGVGKTFVARRLAYLLTG-EKAPQRVNMVQFHQSYSYEDFIQGYRP-NGV 250 (459)
T ss_pred hcccCCHHHHHHHHHHHhc--CCCEEEECCCCCCHHHHHHHHHHHhcC-CcccceeeEEeecccccHHHHhcccCC-CCC
Confidence 4577889999999988864 467788999999999999999988743 246788999999998887665532210 000
Q ss_pred CccccCCCChhHHHHHHHHHh--cCCCeEEEEecCCCc
Q 045686 232 PDQMWIGKDEDGRANEILSNL--RGKKFVLLLDDVWER 267 (885)
Q Consensus 232 ~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVLDdv~~~ 267 (885)
.. ... ..-..+.+..+- .++++++|+|++...
T Consensus 251 gy---~~~-~G~f~~~~~~A~~~p~~~~vliIDEINRa 284 (459)
T PRK11331 251 GF---RRK-DGIFYNFCQQAKEQPEKKYVFIIDEINRA 284 (459)
T ss_pred Ce---Eec-CchHHHHHHHHHhcccCCcEEEEehhhcc
Confidence 00 000 001112222222 247899999999654
No 146
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.81 E-value=7.5e-05 Score=80.06 Aligned_cols=58 Identities=16% Similarity=0.243 Sum_probs=46.8
Q ss_pred hhcccccceeeccCCcccccChhhhccccccEeecCCcccccccCCcccccCcccceecccccc
Q 045686 583 IGRLKNLHHLNLSNTSIGCLPTAIKRLIKLKVLLLDGIQCHLSIPEGVISSLSSLQVFSCFSTE 646 (885)
Q Consensus 583 i~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~ 646 (885)
+..+.++++|++++|.+..+|. -..+|++|.+++|..+..+|.. + ..+|++|++.+|.
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~-L--P~nLe~L~Ls~Cs 105 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGS-I--PEGLEKLTVCHCP 105 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCch-h--hhhhhheEccCcc
Confidence 3457899999999999999992 2357999999999888888865 4 3589999998874
No 147
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.79 E-value=0.00024 Score=76.53 Aligned_cols=148 Identities=13% Similarity=0.131 Sum_probs=81.2
Q ss_pred CCccchhHHHHHHHHHhhcCCC-eEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHHHcC
Q 045686 152 GKTVGLDSIISEVWRCIEDHNE-KVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILRRFE 230 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~ 230 (885)
.+++|.+...+.+..++..+.. .++.++|++|+||||+|+.+++... .. ...++.+. .....+...+.....
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~---~~---~~~i~~~~-~~~~~i~~~l~~~~~ 93 (316)
T PHA02544 21 DECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVG---AE---VLFVNGSD-CRIDFVRNRLTRFAS 93 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhC---cc---ceEeccCc-ccHHHHHHHHHHHHH
Confidence 5689999999999999976554 5667799999999999999988752 21 22333333 111111111110000
Q ss_pred CCccccCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccccccccCCCCCEEEEEcCChhH-Hhhh-ccccee
Q 045686 231 IPDQMWIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSDLLDDSSQTGSKIVFTTRSEEV-CGEM-GARRRF 308 (885)
Q Consensus 231 ~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~~l~~~~~~gs~IivTTR~~~v-~~~~-~~~~~~ 308 (885)
. ..+.+.+-++|+||+.....-........+-+....++++|+||....- ...+ .....+
T Consensus 94 ~------------------~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i 155 (316)
T PHA02544 94 T------------------VSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVI 155 (316)
T ss_pred h------------------hcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEE
Confidence 0 0012345689999996541111100000001123456788888865431 1111 112356
Q ss_pred eccCCChHHHHHHHHH
Q 045686 309 RVECLSPEAALDLFRY 324 (885)
Q Consensus 309 ~l~~L~~~~~~~Lf~~ 324 (885)
.+...+.++..+++..
T Consensus 156 ~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 156 DFGVPTKEEQIEMMKQ 171 (316)
T ss_pred EeCCCCHHHHHHHHHH
Confidence 7777777777766544
No 148
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.79 E-value=1.1e-06 Score=96.85 Aligned_cols=130 Identities=25% Similarity=0.216 Sum_probs=100.9
Q ss_pred CCccceEEEecccCcccccccccCCCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCchh-hhcccc
Q 045686 510 DGWHEAVRLSLWGSSIDFLALVEAPSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPEE-IGRLKN 588 (885)
Q Consensus 510 ~~~~~~~~l~l~~~~i~~~~~~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~-i~~L~~ 588 (885)
..|..+...+++.|.+... -..+.-++.|+.|+|++|.+.. +. ++..|++|+.|||++| .+..+|.- ...+.
T Consensus 161 ~~Wn~L~~a~fsyN~L~~m-D~SLqll~ale~LnLshNk~~~--v~--~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~- 233 (1096)
T KOG1859|consen 161 PVWNKLATASFSYNRLVLM-DESLQLLPALESLNLSHNKFTK--VD--NLRRLPKLKHLDLSYN-CLRHVPQLSMVGCK- 233 (1096)
T ss_pred hhhhhHhhhhcchhhHHhH-HHHHHHHHHhhhhccchhhhhh--hH--HHHhcccccccccccc-hhccccccchhhhh-
Confidence 4477888889988887641 1233456899999999999877 54 4899999999999999 88888762 22344
Q ss_pred cceeeccCCcccccChhhhccccccEeecCCcccccccC-CcccccCcccceecccccccc
Q 045686 589 LHHLNLSNTSIGCLPTAIKRLIKLKVLLLDGIQCHLSIP-EGVISSLSSLQVFSCFSTELV 648 (885)
Q Consensus 589 L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp-~~~i~~L~~L~~L~l~~~~~~ 648 (885)
|+.|++++|.+++|- ++.+|.+|+.||+++|- +.... -..++.|..|+.|.+.+|.+.
T Consensus 234 L~~L~lrnN~l~tL~-gie~LksL~~LDlsyNl-l~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 234 LQLLNLRNNALTTLR-GIENLKSLYGLDLSYNL-LSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred heeeeecccHHHhhh-hHHhhhhhhccchhHhh-hhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 999999999998886 79999999999999995 33221 112788999999999998763
No 149
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.79 E-value=0.00013 Score=70.33 Aligned_cols=128 Identities=13% Similarity=0.147 Sum_probs=74.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccC--CC---Ccc--EEEEEEEcCcccHHHHHHHHHHHcCCCcc---c-cC-C
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDT--GH---DFD--LVIWVKVSRDANLEKIQESILRRFEIPDQ---M-WI-G 238 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~--~~---~f~--~~~wv~v~~~~~~~~~~~~i~~~l~~~~~---~-~~-~ 238 (885)
.++.+++|+|++|+|||||.+.+..+.-.. .. .|. .+.| +.+ .+.+..+++... . .. -
T Consensus 19 ~~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~--~~q--------~~~l~~~~L~~~~~~~~~~~L 88 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIF--IDQ--------LQFLIDVGLGYLTLGQKLSTL 88 (176)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEE--EhH--------HHHHHHcCCCccccCCCcCcC
Confidence 567899999999999999999986421100 00 010 1222 222 456777776431 1 01 1
Q ss_pred CChhHHHHHHHHHhcCC--CeEEEEecCCCccccccccccc-cccccCCCCCEEEEEcCChhHHhhhcccceeec
Q 045686 239 KDEDGRANEILSNLRGK--KFVLLLDDVWERLDLSKVGVSD-LLDDSSQTGSKIVFTTRSEEVCGEMGARRRFRV 310 (885)
Q Consensus 239 ~~~~~~~~~l~~~l~~k--~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~gs~IivTTR~~~v~~~~~~~~~~~l 310 (885)
+..+...-.+.+.+..+ +-++++|+.....|........ .+......|..||++|++.+.... ..+.+.+
T Consensus 89 SgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~--~d~i~~l 161 (176)
T cd03238 89 SGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS--ADWIIDF 161 (176)
T ss_pred CHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 12334444566777778 8899999998876654332111 111122357889999999876542 4444444
No 150
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.79 E-value=0.00046 Score=72.43 Aligned_cols=156 Identities=12% Similarity=0.165 Sum_probs=78.8
Q ss_pred ccchhHHHHHHHHHhh---------c------CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccH
Q 045686 154 TVGLDSIISEVWRCIE---------D------HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANL 218 (885)
Q Consensus 154 ~vgr~~~~~~l~~~L~---------~------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 218 (885)
++|.++.+++|.++.. . ....-+.++|++|+||||+|+.++...... +.....-++.++.
T Consensus 24 l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~-g~~~~~~~v~v~~---- 98 (284)
T TIGR02880 24 LIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRL-GYVRKGHLVSVTR---- 98 (284)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHc-CCcccceEEEecH----
Confidence 6777766666554321 0 122357899999999999998887765321 2221112444432
Q ss_pred HHHHHHHHHHcCCCccccCCCChhHHHHHHHHHhcCCCeEEEEecCCCcc------cccc--ccccccccccCCCCCEEE
Q 045686 219 EKIQESILRRFEIPDQMWIGKDEDGRANEILSNLRGKKFVLLLDDVWERL------DLSK--VGVSDLLDDSSQTGSKIV 290 (885)
Q Consensus 219 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~------~~~~--~~~~~~l~~~~~~gs~Ii 290 (885)
.++ ...+- +.+.......+.+. ..-+|++|++.... ++.. ....+..-+....+.+||
T Consensus 99 ~~l----~~~~~-------g~~~~~~~~~~~~a---~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI 164 (284)
T TIGR02880 99 DDL----VGQYI-------GHTAPKTKEILKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVI 164 (284)
T ss_pred HHH----hHhhc-------ccchHHHHHHHHHc---cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEE
Confidence 122 21111 11111122222222 23588999996321 1111 000011101223355666
Q ss_pred EEcCChhHHhhh--------cccceeeccCCChHHHHHHHHHHhcC
Q 045686 291 FTTRSEEVCGEM--------GARRRFRVECLSPEAALDLFRYKVGE 328 (885)
Q Consensus 291 vTTR~~~v~~~~--------~~~~~~~l~~L~~~~~~~Lf~~~~~~ 328 (885)
+++.....-... .....+.+++++.+|-..++.+.+..
T Consensus 165 ~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~ 210 (284)
T TIGR02880 165 LAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKE 210 (284)
T ss_pred EeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHH
Confidence 666543221111 11356899999999999999887754
No 151
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.78 E-value=0.00026 Score=78.88 Aligned_cols=160 Identities=18% Similarity=0.204 Sum_probs=93.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHHHcCCCccccCCCChhHHHHHHHHHh
Q 045686 173 EKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILRRFEIPDQMWIGKDEDGRANEILSNL 252 (885)
Q Consensus 173 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 252 (885)
...+.|+|+.|+|||+|++.+++..... ..-..++|++. ......+...+.. ...+. +.+.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~-~~~~~v~yi~~------~~~~~~~~~~~~~-------~~~~~----~~~~~ 197 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILEN-NPNAKVVYVSS------EKFTNDFVNALRN-------NKMEE----FKEKY 197 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHh-CCCCcEEEEEH------HHHHHHHHHHHHc-------CCHHH----HHHHH
Confidence 3568899999999999999999987421 11123556543 2333444444321 11222 22333
Q ss_pred cCCCeEEEEecCCCccccc----cccccccccccCCCCCEEEEEcCCh-h--------HHhhhcccceeeccCCChHHHH
Q 045686 253 RGKKFVLLLDDVWERLDLS----KVGVSDLLDDSSQTGSKIVFTTRSE-E--------VCGEMGARRRFRVECLSPEAAL 319 (885)
Q Consensus 253 ~~k~~LlVLDdv~~~~~~~----~~~~~~~l~~~~~~gs~IivTTR~~-~--------v~~~~~~~~~~~l~~L~~~~~~ 319 (885)
++ .-+||+||+....... .+...+. .....|..||+||... . +...+.....+.+++.+.++-.
T Consensus 198 ~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n--~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~ 274 (405)
T TIGR00362 198 RS-VDLLLIDDIQFLAGKERTQEEFFHTFN--ALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRL 274 (405)
T ss_pred Hh-CCEEEEehhhhhcCCHHHHHHHHHHHH--HHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHH
Confidence 32 3589999997532211 1111110 0122456788887642 1 2223333457899999999999
Q ss_pred HHHHHHhcCcccCCccchHHHHHHHHHHhCCchhHHH
Q 045686 320 DLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPLALV 356 (885)
Q Consensus 320 ~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~ 356 (885)
.++.+.+.......+ +++...|++.+.|..-.+.
T Consensus 275 ~il~~~~~~~~~~l~---~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 275 AILQKKAEEEGLELP---DEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred HHHHHHHHHcCCCCC---HHHHHHHHHhcCCCHHHHH
Confidence 999998865433333 3567888888888776544
No 152
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.78 E-value=0.00012 Score=71.46 Aligned_cols=130 Identities=15% Similarity=0.138 Sum_probs=73.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHHHcCCCcc-------------ccC
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILRRFEIPDQ-------------MWI 237 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~-------------~~~ 237 (885)
.++.+++|+|+.|+|||||++.++.......+ .+++.-. ++......+...++.-.. ...
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G----~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~ 98 (178)
T cd03247 26 KQGEKIALLGRSGSGKSTLLQLLTGDLKPQQG----EITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRR 98 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccCCCCCC----EEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhccc
Confidence 56789999999999999999999987643222 2222111 111111111111111000 001
Q ss_pred CCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCCCCCEEEEEcCChhHHhhhcccceeec
Q 045686 238 GKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQTGSKIVFTTRSEEVCGEMGARRRFRV 310 (885)
Q Consensus 238 ~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~gs~IivTTR~~~v~~~~~~~~~~~l 310 (885)
-+..+...-.+.+.+..++-++++|+..+..|........ .+... ..+..||++|++.+.... ..+.+.+
T Consensus 99 LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~-~~~~tii~~sh~~~~~~~--~d~~~~l 169 (178)
T cd03247 99 FSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEV-LKDKTLIWITHHLTGIEH--MDKILFL 169 (178)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHH-cCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 1223444455778888899999999999887754432111 11112 247889999999876642 3444444
No 153
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.77 E-value=0.00044 Score=77.32 Aligned_cols=187 Identities=12% Similarity=0.151 Sum_probs=100.3
Q ss_pred CCccchhHHHHHHHHHhhcCCC-eEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHHH--
Q 045686 152 GKTVGLDSIISEVWRCIEDHNE-KVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILRR-- 228 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~-- 228 (885)
.+++|.+..++.+.+++..+.. ..+.++|+.|+||||+|+.+++.........+.... ... .....+...
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c---~~c----~~C~~i~~~~~ 89 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPC---NQC----ASCKEISSGTS 89 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCC---ccc----HHHHHHhcCCC
Confidence 5689999999999999977655 567889999999999999998876321000000000 000 000000000
Q ss_pred ---cCCCccccCCCChhHHHHHHHHH-----hcCCCeEEEEecCCCccc--cccccccccccccCCCCCEEEEEcC-Chh
Q 045686 229 ---FEIPDQMWIGKDEDGRANEILSN-----LRGKKFVLLLDDVWERLD--LSKVGVSDLLDDSSQTGSKIVFTTR-SEE 297 (885)
Q Consensus 229 ---l~~~~~~~~~~~~~~~~~~l~~~-----l~~k~~LlVLDdv~~~~~--~~~~~~~~~l~~~~~~gs~IivTTR-~~~ 297 (885)
+.... ......++.. .+.+. ..+++-++|+|++..... ...+...+- ....++.+|++|. ...
T Consensus 90 ~d~~~i~g--~~~~gid~ir-~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lE---ep~~~~~~Il~t~~~~k 163 (451)
T PRK06305 90 LDVLEIDG--ASHRGIEDIR-QINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLE---EPPQHVKFFLATTEIHK 163 (451)
T ss_pred CceEEeec--cccCCHHHHH-HHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhh---cCCCCceEEEEeCChHh
Confidence 00000 0001111111 11111 125677899999864321 111111111 2223555666553 333
Q ss_pred HHhh-hcccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCchhH
Q 045686 298 VCGE-MGARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPLA 354 (885)
Q Consensus 298 v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLa 354 (885)
+... ......+++.++++++....+.+.+.......+ .+.+..|++.++|.+--
T Consensus 164 l~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i~---~~al~~L~~~s~gdlr~ 218 (451)
T PRK06305 164 IPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIETS---REALLPIARAAQGSLRD 218 (451)
T ss_pred cchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHH
Confidence 3222 123357899999999999988887654332222 34578899999996643
No 154
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.77 E-value=0.00031 Score=79.35 Aligned_cols=160 Identities=18% Similarity=0.189 Sum_probs=94.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHHHcCCCccccCCCChhHHHHHHHHHh
Q 045686 173 EKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILRRFEIPDQMWIGKDEDGRANEILSNL 252 (885)
Q Consensus 173 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 252 (885)
..-+.|+|++|+|||+|++.+++..... ..-..++|++.. .+..++...+.. ...+ .+.+.+
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~-~~~~~v~yi~~~------~~~~~~~~~~~~-------~~~~----~~~~~~ 209 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEK-NPNAKVVYVTSE------KFTNDFVNALRN-------NTME----EFKEKY 209 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHh-CCCCeEEEEEHH------HHHHHHHHHHHc-------CcHH----HHHHHH
Confidence 3568999999999999999999987421 112235565432 333334443321 1122 233333
Q ss_pred cCCCeEEEEecCCCcccc----ccccccccccccCCCCCEEEEEcCChh---------HHhhhcccceeeccCCChHHHH
Q 045686 253 RGKKFVLLLDDVWERLDL----SKVGVSDLLDDSSQTGSKIVFTTRSEE---------VCGEMGARRRFRVECLSPEAAL 319 (885)
Q Consensus 253 ~~k~~LlVLDdv~~~~~~----~~~~~~~~l~~~~~~gs~IivTTR~~~---------v~~~~~~~~~~~l~~L~~~~~~ 319 (885)
+ +.-+||+||+.....- +.+...+. .....|..||+||.... +...+.....+.+++.+.++-.
T Consensus 210 ~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n--~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~ 286 (450)
T PRK00149 210 R-SVDVLLIDDIQFLAGKERTQEEFFHTFN--ALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRI 286 (450)
T ss_pred h-cCCEEEEehhhhhcCCHHHHHHHHHHHH--HHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHH
Confidence 3 3558999999653211 11111110 01223556888886532 2333444467899999999999
Q ss_pred HHHHHHhcCcccCCccchHHHHHHHHHHhCCchhHHH
Q 045686 320 DLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPLALV 356 (885)
Q Consensus 320 ~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~ 356 (885)
.++.+.+.......+ +++..-|++.++|..-.+.
T Consensus 287 ~il~~~~~~~~~~l~---~e~l~~ia~~~~~~~R~l~ 320 (450)
T PRK00149 287 AILKKKAEEEGIDLP---DEVLEFIAKNITSNVRELE 320 (450)
T ss_pred HHHHHHHHHcCCCCC---HHHHHHHHcCcCCCHHHHH
Confidence 999998864332233 3468889999988776544
No 155
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.76 E-value=0.00013 Score=70.09 Aligned_cols=129 Identities=14% Similarity=0.155 Sum_probs=75.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCc--c---EEEEEEEcCcccH--HHHHHHHHHHcCCCccccCCCChhH
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDF--D---LVIWVKVSRDANL--EKIQESILRRFEIPDQMWIGKDEDG 243 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f--~---~~~wv~v~~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~ 243 (885)
.+..+++|+|+.|+|||||++.++.......+.. + .+.+ +.+.... ..+...+... .. ..-+..+.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~--~~q~~~~~~~tv~~nl~~~---~~--~~LS~G~~ 97 (166)
T cd03223 25 KPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLF--LPQRPYLPLGTLREQLIYP---WD--DVLSGGEQ 97 (166)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEE--ECCCCccccccHHHHhhcc---CC--CCCCHHHH
Confidence 5678999999999999999999998764432221 1 1222 2333211 1222222210 11 12334455
Q ss_pred HHHHHHHHhcCCCeEEEEecCCCccccccccccccccccCCCCCEEEEEcCChhHHhhhcccceeec
Q 045686 244 RANEILSNLRGKKFVLLLDDVWERLDLSKVGVSDLLDDSSQTGSKIVFTTRSEEVCGEMGARRRFRV 310 (885)
Q Consensus 244 ~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~~l~~~~~~gs~IivTTR~~~v~~~~~~~~~~~l 310 (885)
..-.+.+.+..++-++++|+.....|.........+ ....+..||++|++.+... . .++.+.+
T Consensus 98 ~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~--l~~~~~tiiivsh~~~~~~-~-~d~i~~l 160 (166)
T cd03223 98 QRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQL--LKELGITVISVGHRPSLWK-F-HDRVLDL 160 (166)
T ss_pred HHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHH--HHHhCCEEEEEeCChhHHh-h-CCEEEEE
Confidence 556678888889999999999887775543221110 0112578999999987653 2 3344443
No 156
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.76 E-value=0.00047 Score=80.15 Aligned_cols=193 Identities=14% Similarity=0.133 Sum_probs=106.4
Q ss_pred CCccchhHHHHHHHHHhhcCCC-eEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHHHcC
Q 045686 152 GKTVGLDSIISEVWRCIEDHNE-KVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILRRFE 230 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~ 230 (885)
.++||.+..++.|..++..+.. ..+.++|+.|+||||+|+.+++........-.. ..++.-.....|.....
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~-------~~c~~c~~c~~i~~~~~ 88 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKG-------RPCGTCEMCRAIAEGSA 88 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC-------CCCccCHHHHHHhcCCC
Confidence 4689999999999998876554 456899999999999999998776311000000 01111122222222111
Q ss_pred CCcccc---CCCChhHHHHHHHHHh-----cCCCeEEEEecCCCccc--cccccccccccccCCCCCEEEEEcCC-hhHH
Q 045686 231 IPDQMW---IGKDEDGRANEILSNL-----RGKKFVLLLDDVWERLD--LSKVGVSDLLDDSSQTGSKIVFTTRS-EEVC 299 (885)
Q Consensus 231 ~~~~~~---~~~~~~~~~~~l~~~l-----~~k~~LlVLDdv~~~~~--~~~~~~~~~l~~~~~~gs~IivTTR~-~~v~ 299 (885)
...-.. .....++. ..+.+.+ .+++-++|+|++..... ...+...+- .....+.+|++|.+ ..+.
T Consensus 89 ~d~~~i~~~~~~~vd~i-r~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LE---epp~~tv~Il~t~~~~kll 164 (585)
T PRK14950 89 VDVIEMDAASHTSVDDA-REIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLE---EPPPHAIFILATTEVHKVP 164 (585)
T ss_pred CeEEEEeccccCCHHHH-HHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHh---cCCCCeEEEEEeCChhhhh
Confidence 100000 01112222 2222222 24567999999864321 222211111 22234556555543 3333
Q ss_pred hhh-cccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCchhHHHHH
Q 045686 300 GEM-GARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPLALVTI 358 (885)
Q Consensus 300 ~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~ 358 (885)
..+ .....+.+..++.++....+.+.+.......+ .+.+..|++.++|.+..+...
T Consensus 165 ~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~---~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 165 ATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLE---PGALEAIARAATGSMRDAENL 221 (585)
T ss_pred HHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 221 22357889999999999999887754433222 245789999999988655443
No 157
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.76 E-value=0.00029 Score=77.15 Aligned_cols=175 Identities=16% Similarity=0.245 Sum_probs=97.4
Q ss_pred CCccchhHHHHHHHHHhhc-------------CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccH
Q 045686 152 GKTVGLDSIISEVWRCIED-------------HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANL 218 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~-------------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 218 (885)
.++.|.+..+++|.+.+.- ...+-+.++|++|+|||++|+.+++... ..| +.+..
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~---~~f-----i~i~~---- 212 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTT---ATF-----IRVVG---- 212 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC---CCE-----EEEeh----
Confidence 3567999988888876621 3457788999999999999999998762 333 11111
Q ss_pred HHHHHHHHHHcCCCccccCCCChhHHHHHHHHHhcCCCeEEEEecCCCccc------------ccccccccc--ccc-cC
Q 045686 219 EKIQESILRRFEIPDQMWIGKDEDGRANEILSNLRGKKFVLLLDDVWERLD------------LSKVGVSDL--LDD-SS 283 (885)
Q Consensus 219 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~------------~~~~~~~~~--l~~-~~ 283 (885)
..+ .... .+.........+.......+.+|++|+++.... .......+. +.. ..
T Consensus 213 s~l----~~k~-------~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~ 281 (398)
T PTZ00454 213 SEF----VQKY-------LGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQ 281 (398)
T ss_pred HHH----HHHh-------cchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCC
Confidence 111 1110 111111222222233346789999999864210 000000010 000 12
Q ss_pred CCCCEEEEEcCChhHHhh--h---cccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCchh
Q 045686 284 QTGSKIVFTTRSEEVCGE--M---GARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPL 353 (885)
Q Consensus 284 ~~gs~IivTTR~~~v~~~--~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPL 353 (885)
..+..||+||...+.... . .-...+.+...+.++-..+|+..........+.+ ..++++.+.|..-
T Consensus 282 ~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd----~~~la~~t~g~sg 352 (398)
T PTZ00454 282 TTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVD----LEDFVSRPEKISA 352 (398)
T ss_pred CCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccC----HHHHHHHcCCCCH
Confidence 235678888876543211 1 2345688999999998888887765433333333 3556666766543
No 158
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.75 E-value=9.8e-05 Score=74.35 Aligned_cols=133 Identities=24% Similarity=0.334 Sum_probs=82.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--cc--------------EEEEEEEc----------------C----
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FD--------------LVIWVKVS----------------R---- 214 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~--------------~~~wv~v~----------------~---- 214 (885)
..+.+++|+|+.|+|||||.+.++.-..+..+. .+ .+.++.-+ .
T Consensus 26 ~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~ 105 (258)
T COG1120 26 PKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHL 105 (258)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCccc
Confidence 568999999999999999999998866432111 00 12222210 0
Q ss_pred ----ccc--HHHHHHHHHHHcCCCccc---c-CCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccc-cccccccc-c
Q 045686 215 ----DAN--LEKIQESILRRFEIPDQM---W-IGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKV-GVSDLLDD-S 282 (885)
Q Consensus 215 ----~~~--~~~~~~~i~~~l~~~~~~---~-~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~-~~~~~l~~-~ 282 (885)
..+ -.++..+.++.++...-. . .-+..+.....+.+.|..+.-+++||+..+..|.... ...-.+.. .
T Consensus 106 ~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~ 185 (258)
T COG1120 106 GLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLN 185 (258)
T ss_pred ccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHH
Confidence 001 122455566676654321 1 1233444455678899999999999999988776433 11111111 2
Q ss_pred CCCCCEEEEEcCChhHHhhhc
Q 045686 283 SQTGSKIVFTTRSEEVCGEMG 303 (885)
Q Consensus 283 ~~~gs~IivTTR~~~v~~~~~ 303 (885)
..+|..||+++++.+.|....
T Consensus 186 ~~~~~tvv~vlHDlN~A~rya 206 (258)
T COG1120 186 REKGLTVVMVLHDLNLAARYA 206 (258)
T ss_pred HhcCCEEEEEecCHHHHHHhC
Confidence 356889999999998877653
No 159
>PF14516 AAA_35: AAA-like domain
Probab=97.75 E-value=0.0014 Score=70.47 Aligned_cols=204 Identities=15% Similarity=0.184 Sum_probs=121.0
Q ss_pred CCCccchhHHHHHHHHHhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCc-----ccHH----HH
Q 045686 151 IGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRD-----ANLE----KI 221 (885)
Q Consensus 151 ~~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~-----~~~~----~~ 221 (885)
.+..|.|...-+++.+.+.+ ++..+.|.|+-.+|||+|...+.+.... ..+. ++++++..- .+.. .+
T Consensus 10 ~~~Yi~R~~~e~~~~~~i~~-~G~~~~I~apRq~GKTSll~~l~~~l~~--~~~~-~v~id~~~~~~~~~~~~~~f~~~~ 85 (331)
T PF14516_consen 10 SPFYIERPPAEQECYQEIVQ-PGSYIRIKAPRQMGKTSLLLRLLERLQQ--QGYR-CVYIDLQQLGSAIFSDLEQFLRWF 85 (331)
T ss_pred CCcccCchHHHHHHHHHHhc-CCCEEEEECcccCCHHHHHHHHHHHHHH--CCCE-EEEEEeecCCCcccCCHHHHHHHH
Confidence 34578999777777777754 3689999999999999999999888752 3444 457776542 2344 34
Q ss_pred HHHHHHHcCCCccc---cC--CCChhHHHHHHHHHh---cCCCeEEEEecCCCccccccccc-cc-ccccc-------CC
Q 045686 222 QESILRRFEIPDQM---WI--GKDEDGRANEILSNL---RGKKFVLLLDDVWERLDLSKVGV-SD-LLDDS-------SQ 284 (885)
Q Consensus 222 ~~~i~~~l~~~~~~---~~--~~~~~~~~~~l~~~l---~~k~~LlVLDdv~~~~~~~~~~~-~~-~l~~~-------~~ 284 (885)
...+.+++++...- +. ..........+.+.+ .+++.+|++|+++...+...+.. .+ .++.+ ..
T Consensus 86 ~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~ 165 (331)
T PF14516_consen 86 CEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPI 165 (331)
T ss_pred HHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcc
Confidence 55666667664311 00 112223333344332 26899999999976433111100 00 00000 00
Q ss_pred CCCEEEEEcCChh--HH-----hhhcccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCchhHHHH
Q 045686 285 TGSKIVFTTRSEE--VC-----GEMGARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPLALVT 357 (885)
Q Consensus 285 ~gs~IivTTR~~~--v~-----~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~ 357 (885)
-..-.+|..+..+ .. ..+.....+.|++++.+|...|..+.-..- . ....+.|...+||+|.-+..
T Consensus 166 ~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~----~---~~~~~~l~~~tgGhP~Lv~~ 238 (331)
T PF14516_consen 166 WQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEF----S---QEQLEQLMDWTGGHPYLVQK 238 (331)
T ss_pred cceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccC----C---HHHHHHHHHHHCCCHHHHHH
Confidence 0111122222111 11 112234578999999999999987764221 1 12289999999999999999
Q ss_pred HHHHHhcC
Q 045686 358 IGHAMASR 365 (885)
Q Consensus 358 ~~~~l~~~ 365 (885)
++..+..+
T Consensus 239 ~~~~l~~~ 246 (331)
T PF14516_consen 239 ACYLLVEE 246 (331)
T ss_pred HHHHHHHc
Confidence 99999774
No 160
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.75 E-value=0.00049 Score=77.39 Aligned_cols=193 Identities=11% Similarity=0.113 Sum_probs=105.2
Q ss_pred CCccchhHHHHHHHHHhhcCCCe-EEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHHHcC
Q 045686 152 GKTVGLDSIISEVWRCIEDHNEK-VIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILRRFE 230 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~ 230 (885)
.++||.+..++.+...+..++.. ++.++|+.|+||||+|+.+++..-.. ...+. .....-.....+.....
T Consensus 14 deiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~-~~~~~-------~pC~~C~~C~~~~~~~h 85 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCE-QGPSS-------TPCDTCIQCQSALENRH 85 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCC-CCCCC-------CCCcccHHHHHHhhcCC
Confidence 46899999999999999776654 56899999999999999888765211 00000 00000000000000000
Q ss_pred CCc---cccCCCChhHHHHHHHHH----hcCCCeEEEEecCCCccc--cccccccccccccCCCCCEEEEEcCCh-hHHh
Q 045686 231 IPD---QMWIGKDEDGRANEILSN----LRGKKFVLLLDDVWERLD--LSKVGVSDLLDDSSQTGSKIVFTTRSE-EVCG 300 (885)
Q Consensus 231 ~~~---~~~~~~~~~~~~~~l~~~----l~~k~~LlVLDdv~~~~~--~~~~~~~~~l~~~~~~gs~IivTTR~~-~v~~ 300 (885)
... ........++....+... ..+++-++|+|++..... ...+...+- .....+++|++|.+. .+..
T Consensus 86 ~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LE---Epp~~t~FIL~ttd~~kL~~ 162 (535)
T PRK08451 86 IDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLE---EPPSYVKFILATTDPLKLPA 162 (535)
T ss_pred CeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHh---hcCCceEEEEEECChhhCch
Confidence 000 000011122222222210 124566999999965422 122211111 223456666666553 2221
Q ss_pred h-hcccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCchhHHHHH
Q 045686 301 E-MGARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPLALVTI 358 (885)
Q Consensus 301 ~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~ 358 (885)
. ......+++.+++.++....+.+.+.......+ .+.++.|++.++|.+.-+..+
T Consensus 163 tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~---~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 163 TILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYE---PEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred HHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHHHH
Confidence 1 122367899999999999999887754433222 345789999999988655443
No 161
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.75 E-value=0.00012 Score=71.47 Aligned_cols=126 Identities=18% Similarity=0.243 Sum_probs=76.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEE---EcCcccHHH------HHHHHHHHcCCCccc----cC
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVK---VSRDANLEK------IQESILRRFEIPDQM----WI 237 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~---v~~~~~~~~------~~~~i~~~l~~~~~~----~~ 237 (885)
.++.+++|+|+.|+|||||++.++....+. .+.+++. +.. .+... ...++++.+++.... ..
T Consensus 23 ~~G~~~~l~G~nGsGKStLl~~i~G~~~~~----~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~ 97 (180)
T cd03214 23 EAGEIVGILGPNGAGKSTLLKTLAGLLKPS----SGEILLDGKDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNE 97 (180)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCC----CcEEEECCEECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCccc
Confidence 567899999999999999999999876432 2333332 111 11111 112256666654311 01
Q ss_pred CCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCCC-CCEEEEEcCChhHHhh
Q 045686 238 GKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQT-GSKIVFTTRSEEVCGE 301 (885)
Q Consensus 238 ~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~-gs~IivTTR~~~v~~~ 301 (885)
-+..+...-.+.+.+...+-++++|+.....|........ .+...... |..||++|++.+....
T Consensus 98 LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~ 163 (180)
T cd03214 98 LSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAAR 163 (180)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 2234445556778888899999999998877654432111 11112223 6789999999776543
No 162
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.74 E-value=0.0006 Score=78.98 Aligned_cols=193 Identities=12% Similarity=0.099 Sum_probs=104.3
Q ss_pred CCccchhHHHHHHHHHhhcCCC-eEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHHHcC
Q 045686 152 GKTVGLDSIISEVWRCIEDHNE-KVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILRRFE 230 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~ 230 (885)
.+++|.+..++.|..++..++. ..+.++|+.|+||||+|+.++...-.. ..+... ....+.-...+.+.....
T Consensus 16 ~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~--~~~~~~----~~~Cg~C~~C~~i~~g~h 89 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCL--NSDKPT----PEPCGKCELCRAIAAGNA 89 (620)
T ss_pred hhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCC--CcCCCC----CCCCcccHHHHHHhcCCC
Confidence 4688999999999999977543 577899999999999999999887421 111000 011111122222221111
Q ss_pred CCc---cccCCCChhHHHHHHHHHh-----cCCCeEEEEecCCCccc--cccccccccccccCCCCCEEEE-EcCChhHH
Q 045686 231 IPD---QMWIGKDEDGRANEILSNL-----RGKKFVLLLDDVWERLD--LSKVGVSDLLDDSSQTGSKIVF-TTRSEEVC 299 (885)
Q Consensus 231 ~~~---~~~~~~~~~~~~~~l~~~l-----~~k~~LlVLDdv~~~~~--~~~~~~~~~l~~~~~~gs~Iiv-TTR~~~v~ 299 (885)
... ........+...+ +.+.. .+++-++|+|++..... ...+...+- .....+.+|+ |+....+.
T Consensus 90 ~D~~ei~~~~~~~vd~IRe-ii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LE---ePp~~tvfIL~t~~~~~ll 165 (620)
T PRK14948 90 LDVIEIDAASNTGVDNIRE-LIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLE---EPPPRVVFVLATTDPQRVL 165 (620)
T ss_pred ccEEEEeccccCCHHHHHH-HHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHh---cCCcCeEEEEEeCChhhhh
Confidence 100 0001112222222 22222 24566899999975422 222211111 2222344444 44433333
Q ss_pred hhh-cccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCchhHHHH
Q 045686 300 GEM-GARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPLALVT 357 (885)
Q Consensus 300 ~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~ 357 (885)
..+ .....+.+..++.++....+...+.......+ .+.+..|++.++|.+..+..
T Consensus 166 pTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is---~~al~~La~~s~G~lr~A~~ 221 (620)
T PRK14948 166 PTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIE---PEALTLVAQRSQGGLRDAES 221 (620)
T ss_pred HHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 222 23356788899999988888877754332222 23478999999998765543
No 163
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.72 E-value=6.9e-05 Score=71.74 Aligned_cols=121 Identities=20% Similarity=0.166 Sum_probs=72.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcC--cccHHHHHHHHHHHcCCCccccCCCChhHHHHHH
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSR--DANLEKIQESILRRFEIPDQMWIGKDEDGRANEI 248 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~--~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l 248 (885)
.++.+++|+|+.|+|||||.+.++....+ ..+.+++.-.. ..+.... ....++... .-+..+...-.+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~----~~G~v~~~g~~~~~~~~~~~---~~~~i~~~~---qLS~G~~qrl~l 93 (163)
T cd03216 24 RRGEVHALLGENGAGKSTLMKILSGLYKP----DSGEILVDGKEVSFASPRDA---RRAGIAMVY---QLSVGERQMVEI 93 (163)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCCCC----CCeEEEECCEECCcCCHHHH---HhcCeEEEE---ecCHHHHHHHHH
Confidence 56789999999999999999999987632 23344432111 1111111 111122111 123344555567
Q ss_pred HHHhcCCCeEEEEecCCCccccccccccc-cccccCCCCCEEEEEcCChhHHhh
Q 045686 249 LSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQTGSKIVFTTRSEEVCGE 301 (885)
Q Consensus 249 ~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~gs~IivTTR~~~v~~~ 301 (885)
.+.+..++-++++|+.....|........ .+......|..||++|++.+....
T Consensus 94 aral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~ 147 (163)
T cd03216 94 ARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFE 147 (163)
T ss_pred HHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 78888899999999998877654332111 111122347889999999765443
No 164
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.71 E-value=0.00016 Score=69.85 Aligned_cols=129 Identities=20% Similarity=0.228 Sum_probs=72.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcC--cccHHHHHHHHHHHcCCCcc--c-cC-------C
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSR--DANLEKIQESILRRFEIPDQ--M-WI-------G 238 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~--~~~~~~~~~~i~~~l~~~~~--~-~~-------~ 238 (885)
.++.+++|+|+.|+|||||.+.++.-.... .+.+++.-.. ...... ....++.-.. . +. -
T Consensus 26 ~~G~~~~l~G~nGsGKstLl~~i~G~~~~~----~G~i~~~g~~~~~~~~~~----~~~~i~~~~~~~~~~~~t~~e~lL 97 (171)
T cd03228 26 KPGEKVAIVGPSGSGKSTLLKLLLRLYDPT----SGEILIDGVDLRDLDLES----LRKNIAYVPQDPFLFSGTIRENIL 97 (171)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCCCCC----CCEEEECCEEhhhcCHHH----HHhhEEEEcCCchhccchHHHHhh
Confidence 577899999999999999999999876432 2223322110 001111 1111111000 0 00 1
Q ss_pred CChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCCCCCEEEEEcCChhHHhhhcccceeec
Q 045686 239 KDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQTGSKIVFTTRSEEVCGEMGARRRFRV 310 (885)
Q Consensus 239 ~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~gs~IivTTR~~~v~~~~~~~~~~~l 310 (885)
+..+...-.+.+.+..++-+++||+.....|........ .+... ..+..||++|++.+.... ..+.+.+
T Consensus 98 S~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~-~~~~tii~~sh~~~~~~~--~d~~~~l 167 (171)
T cd03228 98 SGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRAL-AKGKTVIVIAHRLSTIRD--ADRIIVL 167 (171)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHh-cCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 122334445677788899999999998877654331111 11112 235789999999877653 3444443
No 165
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.70 E-value=0.00015 Score=70.28 Aligned_cols=124 Identities=21% Similarity=0.197 Sum_probs=70.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHHHcCCCcc---ccC---------C
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILRRFEIPDQ---MWI---------G 238 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~---~~~---------~ 238 (885)
.++.+++|+|+.|+|||||++.++...... .+.+++.-....... ..+...++.-.. ... -
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~----~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~L 96 (173)
T cd03230 24 EKGEIYGLLGPNGAGKTTLIKIILGLLKPD----SGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKL 96 (173)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCC----CeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhc
Confidence 567899999999999999999999876322 233333211000000 011111111000 000 1
Q ss_pred CChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCCCCCEEEEEcCChhHHhh
Q 045686 239 KDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQTGSKIVFTTRSEEVCGE 301 (885)
Q Consensus 239 ~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~gs~IivTTR~~~v~~~ 301 (885)
+..+...-.+.+.+..++-++++|+.....|........ .+......|..||++|++.+....
T Consensus 97 S~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~ 160 (173)
T cd03230 97 SGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAER 160 (173)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHH
Confidence 223334446778888999999999998887755432111 111122347889999999876553
No 166
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.69 E-value=0.00018 Score=86.15 Aligned_cols=155 Identities=15% Similarity=0.204 Sum_probs=89.4
Q ss_pred CCccchhHHHHHHHHHhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhccCC--CC-ccEEEEEEEcCcccHHHHHHHHHHH
Q 045686 152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTG--HD-FDLVIWVKVSRDANLEKIQESILRR 228 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~--~~-f~~~~wv~v~~~~~~~~~~~~i~~~ 228 (885)
.+++||+++++++++.|......-+.++|++|+|||++|+.+++...... .. ....+|. + +...+. ..
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~----~~~~l~----a~ 252 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-L----DMGSLL----AG 252 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-e----cHHHHh----hh
Confidence 56899999999999999776666678999999999999999998863211 11 1233332 1 111111 00
Q ss_pred cCCCccccCCCChhHHHHHHHHHh-cCCCeEEEEecCCCccc----------cccccccccccccCCCC-CEEEEEcCCh
Q 045686 229 FEIPDQMWIGKDEDGRANEILSNL-RGKKFVLLLDDVWERLD----------LSKVGVSDLLDDSSQTG-SKIVFTTRSE 296 (885)
Q Consensus 229 l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVLDdv~~~~~----------~~~~~~~~~l~~~~~~g-s~IivTTR~~ 296 (885)
.. .....++....+.+.+ ..++.+|++|++..-.. ...+..+ .-.+| -++|-+|...
T Consensus 253 --~~----~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~-----~l~~g~i~~IgaTt~~ 321 (731)
T TIGR02639 253 --TK----YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKP-----ALSSGKLRCIGSTTYE 321 (731)
T ss_pred --cc----ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHH-----HHhCCCeEEEEecCHH
Confidence 00 1112333444444433 34678999999864311 1111111 11233 3455554432
Q ss_pred hHHhh-------hcccceeeccCCChHHHHHHHHHHh
Q 045686 297 EVCGE-------MGARRRFRVECLSPEAALDLFRYKV 326 (885)
Q Consensus 297 ~v~~~-------~~~~~~~~l~~L~~~~~~~Lf~~~~ 326 (885)
+.... ..-...+.++.++.++..++++...
T Consensus 322 e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 322 EYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 22111 1112468999999999999998655
No 167
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.68 E-value=0.00048 Score=76.73 Aligned_cols=152 Identities=14% Similarity=0.154 Sum_probs=88.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHHHcCCCccccCCCChhHHHHHHHHHhc
Q 045686 174 KVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILRRFEIPDQMWIGKDEDGRANEILSNLR 253 (885)
Q Consensus 174 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 253 (885)
.-+.|+|+.|+|||+|++.+++.... .. ..+++++ ...+...+...+... . ...++..++
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~--~~-~~v~yi~------~~~f~~~~~~~l~~~-------~----~~~f~~~~~ 201 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRE--SG-GKILYVR------SELFTEHLVSAIRSG-------E----MQRFRQFYR 201 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHH--cC-CCEEEee------HHHHHHHHHHHHhcc-------h----HHHHHHHcc
Confidence 56889999999999999999998742 12 2345554 233344444444211 1 122333333
Q ss_pred CCCeEEEEecCCCccccc----cccccccccccCCCCCEEEEEcCCh---------hHHhhhcccceeeccCCChHHHHH
Q 045686 254 GKKFVLLLDDVWERLDLS----KVGVSDLLDDSSQTGSKIVFTTRSE---------EVCGEMGARRRFRVECLSPEAALD 320 (885)
Q Consensus 254 ~k~~LlVLDdv~~~~~~~----~~~~~~~l~~~~~~gs~IivTTR~~---------~v~~~~~~~~~~~l~~L~~~~~~~ 320 (885)
+.-+|++||+....... .+...+. .....|..||+||... .+...+.....+.+.+++.++-..
T Consensus 202 -~~dvLiIDDiq~l~~k~~~qeelf~l~N--~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~ 278 (445)
T PRK12422 202 -NVDALFIEDIEVFSGKGATQEEFFHTFN--SLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRS 278 (445)
T ss_pred -cCCEEEEcchhhhcCChhhHHHHHHHHH--HHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHH
Confidence 45588899986542211 1111111 0112356788888542 223334445678999999999999
Q ss_pred HHHHHhcCcccCCccchHHHHHHHHHHhCCc
Q 045686 321 LFRYKVGEDVYSSHFEISNLAQTVVEECRGL 351 (885)
Q Consensus 321 Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~Gl 351 (885)
++.+++......-+ +++..-|++.+.|.
T Consensus 279 iL~~k~~~~~~~l~---~evl~~la~~~~~d 306 (445)
T PRK12422 279 FLERKAEALSIRIE---ETALDFLIEALSSN 306 (445)
T ss_pred HHHHHHHHcCCCCC---HHHHHHHHHhcCCC
Confidence 99988854433333 23455566666643
No 168
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.68 E-value=0.00012 Score=70.95 Aligned_cols=130 Identities=15% Similarity=0.170 Sum_probs=73.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcC--cccHHHHHHHHHHHcCCCccc---cC-------C
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSR--DANLEKIQESILRRFEIPDQM---WI-------G 238 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~--~~~~~~~~~~i~~~l~~~~~~---~~-------~ 238 (885)
.++.+++|+|+.|+|||||++.++....+. .+.+++.-.. ....... ...++..... +. -
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~----~G~i~~~g~~~~~~~~~~~----~~~i~~~~q~~~~~~~tv~~~lL 97 (173)
T cd03246 26 EPGESLAIIGPSGSGKSTLARLILGLLRPT----SGRVRLDGADISQWDPNEL----GDHVGYLPQDDELFSGSIAENIL 97 (173)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccCCC----CCeEEECCEEcccCCHHHH----HhheEEECCCCccccCcHHHHCc
Confidence 567899999999999999999999876432 2222221100 0111111 1111111000 00 1
Q ss_pred CChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCCCCCEEEEEcCChhHHhhhcccceeec
Q 045686 239 KDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQTGSKIVFTTRSEEVCGEMGARRRFRV 310 (885)
Q Consensus 239 ~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~gs~IivTTR~~~v~~~~~~~~~~~l 310 (885)
+..+...-.+.+.+..++-+++||+.....|........ .+......|..||++|++.+... . ..+.+.+
T Consensus 98 S~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~-~-~d~v~~l 168 (173)
T cd03246 98 SGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA-S-ADRILVL 168 (173)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-h-CCEEEEE
Confidence 223344455777888888999999998877754332111 11112234788999999987664 2 3444444
No 169
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.66 E-value=0.00016 Score=72.40 Aligned_cols=130 Identities=18% Similarity=0.173 Sum_probs=85.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcC-----cccHHHHHHHHHHHcCCCccc-----cCCCC
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSR-----DANLEKIQESILRRFEIPDQM-----WIGKD 240 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~-----~~~~~~~~~~i~~~l~~~~~~-----~~~~~ 240 (885)
.++.+++|+|.+|+||||+++.+..-..+.. +.+++.-.+ .....+...++++.+|..... .+-+.
T Consensus 37 ~~ge~~glVGESG~GKSTlgr~i~~L~~pt~----G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSG 112 (268)
T COG4608 37 KEGETLGLVGESGCGKSTLGRLILGLEEPTS----GEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSG 112 (268)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHcCcCCCC----ceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCc
Confidence 5789999999999999999999998774322 233332111 222344566778887765421 12233
Q ss_pred hhHHHHHHHHHhcCCCeEEEEecCCCcccccccccc--ccccccCCCCCEEEEEcCChhHHhhhcc
Q 045686 241 EDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVS--DLLDDSSQTGSKIVFTTRSEEVCGEMGA 304 (885)
Q Consensus 241 ~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~--~~l~~~~~~gs~IivTTR~~~v~~~~~~ 304 (885)
.+...-.+.+++.-++-++|.|+.-+..|..--... +...-....|-..++.|++-.|+..+..
T Consensus 113 GQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 113 GQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISD 178 (268)
T ss_pred hhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcc
Confidence 444445688899999999999999887665211110 1101134458899999999999887755
No 170
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.65 E-value=0.00018 Score=70.33 Aligned_cols=134 Identities=19% Similarity=0.258 Sum_probs=80.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--ccE---------------E--EEEEEcCcc----cHHHH------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FDL---------------V--IWVKVSRDA----NLEKI------ 221 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~~---------------~--~wv~v~~~~----~~~~~------ 221 (885)
..+.+++|+|.+|+|||||++.++.-.+...+. |++ + +|-+-.... ++.++
T Consensus 31 ~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~ 110 (252)
T COG1124 31 ERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLR 110 (252)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhhhhc
Confidence 678999999999999999999998765432111 111 1 111111111 12211
Q ss_pred ----------HHHHHHHcCCCccc-----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCcccccccccc--ccccccCC
Q 045686 222 ----------QESILRRFEIPDQM-----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVS--DLLDDSSQ 284 (885)
Q Consensus 222 ----------~~~i~~~l~~~~~~-----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~--~~l~~~~~ 284 (885)
..++++++|++..- .+-+..+...-.+.++|.-++-+||+|+..+..|..--... +.......
T Consensus 111 ~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~ 190 (252)
T COG1124 111 PHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKE 190 (252)
T ss_pred cCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHh
Confidence 34566677766431 12223344444688899999999999999887664211110 11111345
Q ss_pred CCCEEEEEcCChhHHhhhcc
Q 045686 285 TGSKIVFTTRSEEVCGEMGA 304 (885)
Q Consensus 285 ~gs~IivTTR~~~v~~~~~~ 304 (885)
.+-.+|+.|++..++..+.+
T Consensus 191 ~~lt~l~IsHdl~~v~~~cd 210 (252)
T COG1124 191 RGLTYLFISHDLALVEHMCD 210 (252)
T ss_pred cCceEEEEeCcHHHHHHHhh
Confidence 67789999999988777644
No 171
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.65 E-value=0.00061 Score=77.21 Aligned_cols=158 Identities=16% Similarity=0.151 Sum_probs=93.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHHHcCCCccccCCCChhHHHHHHHHHhc
Q 045686 174 KVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILRRFEIPDQMWIGKDEDGRANEILSNLR 253 (885)
Q Consensus 174 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 253 (885)
..+.|+|..|+|||.|++.+++..... ..-..++|++. ..+..++...+.. ... ..+.+.++
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~-~~g~~V~Yita------eef~~el~~al~~-------~~~----~~f~~~y~ 376 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRL-YPGTRVRYVSS------EEFTNEFINSIRD-------GKG----DSFRRRYR 376 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHh-CCCCeEEEeeH------HHHHHHHHHHHHh-------ccH----HHHHHHhh
Confidence 458999999999999999999986421 11123556543 3344444433311 111 12233333
Q ss_pred CCCeEEEEecCCCccccc----cccccccccccCCCCCEEEEEcCCh---------hHHhhhcccceeeccCCChHHHHH
Q 045686 254 GKKFVLLLDDVWERLDLS----KVGVSDLLDDSSQTGSKIVFTTRSE---------EVCGEMGARRRFRVECLSPEAALD 320 (885)
Q Consensus 254 ~k~~LlVLDdv~~~~~~~----~~~~~~~l~~~~~~gs~IivTTR~~---------~v~~~~~~~~~~~l~~L~~~~~~~ 320 (885)
+.-+||+||+.....-. .+...+. .....|..|||||+.. .+...+...-.+.+...+.+.-.+
T Consensus 377 -~~DLLlIDDIq~l~gke~tqeeLF~l~N--~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~a 453 (617)
T PRK14086 377 -EMDILLVDDIQFLEDKESTQEEFFHTFN--TLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIA 453 (617)
T ss_pred -cCCEEEEehhccccCCHHHHHHHHHHHH--HHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHH
Confidence 24588999997542211 1111111 1223466788888752 234455566789999999999999
Q ss_pred HHHHHhcCcccCCccchHHHHHHHHHHhCCchhHH
Q 045686 321 LFRYKVGEDVYSSHFEISNLAQTVVEECRGLPLAL 355 (885)
Q Consensus 321 Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai 355 (885)
++.+++.......+ +++..-|++.+.+..-.+
T Consensus 454 IL~kka~~r~l~l~---~eVi~yLa~r~~rnvR~L 485 (617)
T PRK14086 454 ILRKKAVQEQLNAP---PEVLEFIASRISRNIREL 485 (617)
T ss_pred HHHHHHHhcCCCCC---HHHHHHHHHhccCCHHHH
Confidence 99998865444333 345777777776654433
No 172
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.64 E-value=0.00016 Score=71.43 Aligned_cols=132 Identities=18% Similarity=0.227 Sum_probs=82.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC---------------------ccEEEEEEEcCcc------------c
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD---------------------FDLVIWVKVSRDA------------N 217 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~---------------------f~~~~wv~v~~~~------------~ 217 (885)
..+.+|+|+|++|+|||||.+.++.-.....+. +..--|-+|-++. .
T Consensus 27 ~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e 106 (248)
T COG1116 27 EKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAE 106 (248)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcccchhhHHhhheehhhccccchHh
Confidence 678999999999999999999998765432111 1112344443321 1
Q ss_pred HHHHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccc--cccccccccCCCCCEEEE
Q 045686 218 LEKIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKV--GVSDLLDDSSQTGSKIVF 291 (885)
Q Consensus 218 ~~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~--~~~~~l~~~~~~gs~Iiv 291 (885)
..+...++++..|+..-. .+-+........+.+.|..++-+|++|+.....|...- .....+.-+...+.+|++
T Consensus 107 ~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~Tvll 186 (248)
T COG1116 107 ARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLL 186 (248)
T ss_pred HHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEE
Confidence 234566777777775421 12233445555688899999999999999876553211 000011114566789999
Q ss_pred EcCChhHHhhh
Q 045686 292 TTRSEEVCGEM 302 (885)
Q Consensus 292 TTR~~~v~~~~ 302 (885)
.|++-+-|-.+
T Consensus 187 VTHdi~EAv~L 197 (248)
T COG1116 187 VTHDVDEAVYL 197 (248)
T ss_pred EeCCHHHHHhh
Confidence 99997655444
No 173
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.64 E-value=0.00054 Score=79.20 Aligned_cols=194 Identities=16% Similarity=0.180 Sum_probs=103.6
Q ss_pred CCccchhHHHHHHHHHhhcCCC-eEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHHHcC
Q 045686 152 GKTVGLDSIISEVWRCIEDHNE-KVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILRRFE 230 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~ 230 (885)
.++||.+..++.|.+++..++. ..+.++|+.|+||||+|+.+++..... ...+. ..++.-.....|...-.
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~-~~~~~-------~~c~~c~~c~~i~~g~~ 87 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCE-QGLTA-------EPCNVCPPCVEITEGRS 87 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCC-CCCCC-------CCCCccHHHHHHhcCCC
Confidence 5689999999999999977665 456889999999999999998876311 11000 00000011111110000
Q ss_pred CCc---cccCCCChhHHHHHHHHHh-----cCCCeEEEEecCCCccc--cccccccccccccCCCCCEEEE-EcCChhHH
Q 045686 231 IPD---QMWIGKDEDGRANEILSNL-----RGKKFVLLLDDVWERLD--LSKVGVSDLLDDSSQTGSKIVF-TTRSEEVC 299 (885)
Q Consensus 231 ~~~---~~~~~~~~~~~~~~l~~~l-----~~k~~LlVLDdv~~~~~--~~~~~~~~~l~~~~~~gs~Iiv-TTR~~~v~ 299 (885)
... +.......++ ...+.+.+ .+++-++|+|++..... ...+...+- .....+.+|+ ||....+.
T Consensus 88 ~d~~eid~~s~~~v~~-ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LE---epp~~~~fIl~t~~~~kl~ 163 (576)
T PRK14965 88 VDVFEIDGASNTGVDD-IRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLE---EPPPHVKFIFATTEPHKVP 163 (576)
T ss_pred CCeeeeeccCccCHHH-HHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHH---cCCCCeEEEEEeCChhhhh
Confidence 000 0000111122 22222222 24556899999965421 122211111 2223455554 55545454
Q ss_pred hhh-cccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCch-hHHHHHHH
Q 045686 300 GEM-GARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLP-LALVTIGH 360 (885)
Q Consensus 300 ~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP-Lai~~~~~ 360 (885)
..+ .....+.+.+++.++....+...+.......+ .+....|++.++|.. .|+..+-.
T Consensus 164 ~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~---~~al~~la~~a~G~lr~al~~Ldq 223 (576)
T PRK14965 164 ITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISIS---DAALALVARKGDGSMRDSLSTLDQ 223 (576)
T ss_pred HHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 322 23457889999999998888877654332222 235788999999865 44444433
No 174
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=0.00026 Score=68.51 Aligned_cols=138 Identities=16% Similarity=0.154 Sum_probs=86.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhc--cCCC--CccE-----------------EEEEEEcCc--------------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFR--DTGH--DFDL-----------------VIWVKVSRD-------------- 215 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~--~~~~--~f~~-----------------~~wv~v~~~-------------- 215 (885)
..+.+.+|.||.|+||||||..+..+.. +..+ .|++ .+|-.-.+-
T Consensus 28 ~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n 107 (251)
T COG0396 28 KEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMN 107 (251)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCCeeHHHHHHHHHH
Confidence 5778999999999999999999987752 2111 1221 122110000
Q ss_pred ---------ccHHHHHHHHHHHcCCCccc------cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cc
Q 045686 216 ---------ANLEKIQESILRRFEIPDQM------WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LL 279 (885)
Q Consensus 216 ---------~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l 279 (885)
......+++.++.+++...- ..-+..+.....+.+.+.-++-+.|||+.++..|.+++.... .+
T Consensus 108 ~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i 187 (251)
T COG0396 108 ARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGI 187 (251)
T ss_pred hhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHH
Confidence 11233344555666654411 011234555667888888889999999999998887764322 11
Q ss_pred cccCCCCCEEEEEcCChhHHhhhccccee
Q 045686 280 DDSSQTGSKIVFTTRSEEVCGEMGARRRF 308 (885)
Q Consensus 280 ~~~~~~gs~IivTTR~~~v~~~~~~~~~~ 308 (885)
......|+.++|.|+.+.++.....+.++
T Consensus 188 ~~lr~~~~~~liITHy~rll~~i~pD~vh 216 (251)
T COG0396 188 NALREEGRGVLIITHYQRLLDYIKPDKVH 216 (251)
T ss_pred HHHhcCCCeEEEEecHHHHHhhcCCCEEE
Confidence 11345688999999999999887655443
No 175
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.63 E-value=9.9e-05 Score=73.93 Aligned_cols=140 Identities=16% Similarity=0.149 Sum_probs=79.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--cc-----------EEEEEEEcC----cccHH--------------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FD-----------LVIWVKVSR----DANLE-------------- 219 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~-----------~~~wv~v~~----~~~~~-------------- 219 (885)
.++.+++|+|+.|+|||||++.+........+. |+ .+.|+.-.. ..++.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~ 105 (207)
T PRK13539 26 AAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLGGEE 105 (207)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhcCCcH
Confidence 568899999999999999999999875432221 11 112221000 01111
Q ss_pred HHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCCCCCEEEEEcC
Q 045686 220 KIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQTGSKIVFTTR 294 (885)
Q Consensus 220 ~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~gs~IivTTR 294 (885)
.-..++++.+++.... ..-+..+...-.+.+.+..++-++++|+.....|........ .+......|..||++|+
T Consensus 106 ~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH 185 (207)
T PRK13539 106 LDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATH 185 (207)
T ss_pred HHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 1123445555553210 011223344445677788889999999998877654331111 11112234788999999
Q ss_pred ChhHHhhhcccceeeccCC
Q 045686 295 SEEVCGEMGARRRFRVECL 313 (885)
Q Consensus 295 ~~~v~~~~~~~~~~~l~~L 313 (885)
+.+.... ...+.++..
T Consensus 186 ~~~~~~~---~~~~~~~~~ 201 (207)
T PRK13539 186 IPLGLPG---ARELDLGPF 201 (207)
T ss_pred Cchhhcc---CcEEeecCc
Confidence 9765543 556666553
No 176
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.63 E-value=0.0023 Score=63.20 Aligned_cols=185 Identities=16% Similarity=0.213 Sum_probs=104.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEc-CcccHHHHHHHHHHHcCCCccccCCCChhHHHHHHH
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVS-RDANLEKIQESILRRFEIPDQMWIGKDEDGRANEIL 249 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~-~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 249 (885)
.+.+++.|+|.-|+|||++++........ + - ++-+.+. +..+...+...|...+............+.+...+.
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~s~~~--d-~--~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~ 123 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLASLNE--D-Q--VAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELA 123 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHhcCC--C-c--eEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHH
Confidence 45679999999999999999966555521 1 1 1113333 345667778888888876321111112334444444
Q ss_pred HHh-cCCC-eEEEEecCCCcc--ccccccccccccccCCCCCEEEEEcCCh-------hHHhhhc-ccce-eeccCCChH
Q 045686 250 SNL-RGKK-FVLLLDDVWERL--DLSKVGVSDLLDDSSQTGSKIVFTTRSE-------EVCGEMG-ARRR-FRVECLSPE 316 (885)
Q Consensus 250 ~~l-~~k~-~LlVLDdv~~~~--~~~~~~~~~~l~~~~~~gs~IivTTR~~-------~v~~~~~-~~~~-~~l~~L~~~ 316 (885)
... +++| ..+++||..... ..+.+.....+......--+|+..-..+ .+..... -... |.+.|++.+
T Consensus 124 al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~ 203 (269)
T COG3267 124 ALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEA 203 (269)
T ss_pred HHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChH
Confidence 444 3566 899999986532 1222211111111111112233332211 1111111 1123 899999999
Q ss_pred HHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCchhHHHHHHH
Q 045686 317 AALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPLALVTIGH 360 (885)
Q Consensus 317 ~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~ 360 (885)
+...+++.+.+....+.+---.+....|.....|.|.+|..++.
T Consensus 204 ~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 204 ETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 99999988875443222222345678899999999999987664
No 177
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.62 E-value=0.00023 Score=66.51 Aligned_cols=108 Identities=19% Similarity=0.251 Sum_probs=67.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHHHcCCCccccCCCChhHHHHHHHH
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILRRFEIPDQMWIGKDEDGRANEILS 250 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 250 (885)
..+.+++|+|+.|+|||||++.+....... .+.+++.-. ..++... .-+..+...-.+.+
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~----~G~i~~~~~-------------~~i~~~~---~lS~G~~~rv~lar 83 (144)
T cd03221 24 NPGDRIGLVGRNGAGKSTLLKLIAGELEPD----EGIVTWGST-------------VKIGYFE---QLSGGEKMRLALAK 83 (144)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCCCCC----ceEEEECCe-------------EEEEEEc---cCCHHHHHHHHHHH
Confidence 567899999999999999999998876432 233333210 0000000 01233444555778
Q ss_pred HhcCCCeEEEEecCCCccccccccccc-cccccCCCCCEEEEEcCChhHHhh
Q 045686 251 NLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQTGSKIVFTTRSEEVCGE 301 (885)
Q Consensus 251 ~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~gs~IivTTR~~~v~~~ 301 (885)
.+..++-++++|+.....|........ .+... +..||++|++.+....
T Consensus 84 al~~~p~illlDEP~~~LD~~~~~~l~~~l~~~---~~til~~th~~~~~~~ 132 (144)
T cd03221 84 LLLENPNLLLLDEPTNHLDLESIEALEEALKEY---PGTVILVSHDRYFLDQ 132 (144)
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc---CCEEEEEECCHHHHHH
Confidence 888889999999998876654332211 11111 3589999998776544
No 178
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.61 E-value=0.00039 Score=84.29 Aligned_cols=155 Identities=14% Similarity=0.173 Sum_probs=89.9
Q ss_pred CCccchhHHHHHHHHHhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC---ccEEEEEEEcCcccHHHHHHHHHHH
Q 045686 152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD---FDLVIWVKVSRDANLEKIQESILRR 228 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~---f~~~~wv~v~~~~~~~~~~~~i~~~ 228 (885)
.+++||+++++++++.|......-+.++|++|+|||++|+.++.......-. -...+|. + +...++.
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~a----- 248 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLLA----- 248 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHhc-----
Confidence 4689999999999999977555666799999999999999998876321111 1233442 1 2222111
Q ss_pred cCCCccccCCCChhHHHHHHHHHh-cCCCeEEEEecCCCccc---------cccccccccccccCCCCCEEEEEcCChhH
Q 045686 229 FEIPDQMWIGKDEDGRANEILSNL-RGKKFVLLLDDVWERLD---------LSKVGVSDLLDDSSQTGSKIVFTTRSEEV 298 (885)
Q Consensus 229 l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVLDdv~~~~~---------~~~~~~~~~l~~~~~~gs~IivTTR~~~v 298 (885)
|.. .....++....+.+.+ ..++.+|++|++..... ...+..+. .....-++|.+|...+.
T Consensus 249 -g~~----~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~----l~rg~l~~IgaTt~~ey 319 (821)
T CHL00095 249 -GTK----YRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPA----LARGELQCIGATTLDEY 319 (821)
T ss_pred -cCC----CccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHH----HhCCCcEEEEeCCHHHH
Confidence 111 1122344444444333 35689999999953211 11111111 12223566666665543
Q ss_pred Hhh-------hcccceeeccCCChHHHHHHHHHH
Q 045686 299 CGE-------MGARRRFRVECLSPEAALDLFRYK 325 (885)
Q Consensus 299 ~~~-------~~~~~~~~l~~L~~~~~~~Lf~~~ 325 (885)
... ......+.+...+.++...+++..
T Consensus 320 ~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 320 RKHIEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 221 112346788889999998888754
No 179
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.61 E-value=0.0011 Score=76.07 Aligned_cols=192 Identities=13% Similarity=0.084 Sum_probs=104.4
Q ss_pred CCccchhHHHHHHHHHhhcCCC-eEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHHHcC
Q 045686 152 GKTVGLDSIISEVWRCIEDHNE-KVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILRRFE 230 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~ 230 (885)
.+++|.+..++.+..++..+.. ..+.++|+.|+||||+|+.+++..-.. ..... ..+....+- ..|...-.
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~-~~~~~---~pC~~C~~C----~~i~~~~~ 87 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCV-NGPTP---MPCGECSSC----KSIDNDNS 87 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccc-cCCCC---CCCccchHH----HHHHcCCC
Confidence 4689999999999999977554 467899999999999999998876321 11000 001111111 11111000
Q ss_pred CC---ccccCCCChhHHHHHH---HH-HhcCCCeEEEEecCCCccc--cccccccccccccCCCCCEEEEEcCC-hhHHh
Q 045686 231 IP---DQMWIGKDEDGRANEI---LS-NLRGKKFVLLLDDVWERLD--LSKVGVSDLLDDSSQTGSKIVFTTRS-EEVCG 300 (885)
Q Consensus 231 ~~---~~~~~~~~~~~~~~~l---~~-~l~~k~~LlVLDdv~~~~~--~~~~~~~~~l~~~~~~gs~IivTTR~-~~v~~ 300 (885)
.. .........++..... .. -..+++-++|+|++..... ...+...+- .....+.+|++|.+ ..+..
T Consensus 88 ~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LE---epp~~~vfI~~tte~~kL~~ 164 (563)
T PRK06647 88 LDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIE---EPPPYIVFIFATTEVHKLPA 164 (563)
T ss_pred CCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhc---cCCCCEEEEEecCChHHhHH
Confidence 00 0000011222222211 11 1235667899999865432 222221111 22234555555543 33332
Q ss_pred hh-cccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCchhHHHH
Q 045686 301 EM-GARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPLALVT 357 (885)
Q Consensus 301 ~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~ 357 (885)
.+ .....+.+.+++.++....+.+.+.......+ .+.+..|++.++|.+..+..
T Consensus 165 tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~id---~eAl~lLa~~s~GdlR~als 219 (563)
T PRK06647 165 TIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYE---DEALKWIAYKSTGSVRDAYT 219 (563)
T ss_pred HHHHhceEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 22 22356899999999999888887744332222 34577899999998754443
No 180
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.61 E-value=0.00024 Score=66.21 Aligned_cols=90 Identities=26% Similarity=0.147 Sum_probs=49.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHHHcCCCccccCCCChhHHHHHHHHHh
Q 045686 173 EKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILRRFEIPDQMWIGKDEDGRANEILSNL 252 (885)
Q Consensus 173 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 252 (885)
...+.|+|++|+||||+++.++..... ....++++..+........... ........ ...........+....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~ 74 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGP---PGGGVIYIDGEDILEEVLDQLL-LIIVGGKK---ASGSGELRLRLALALA 74 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCC---CCCCEEEECCEEccccCHHHHH-hhhhhccC---CCCCHHHHHHHHHHHH
Confidence 467899999999999999999988742 2233555554433221111111 00011110 1222333333444444
Q ss_pred cCC-CeEEEEecCCCccc
Q 045686 253 RGK-KFVLLLDDVWERLD 269 (885)
Q Consensus 253 ~~k-~~LlVLDdv~~~~~ 269 (885)
... ..++++|+++....
T Consensus 75 ~~~~~~viiiDei~~~~~ 92 (148)
T smart00382 75 RKLKPDVLILDEITSLLD 92 (148)
T ss_pred HhcCCCEEEEECCcccCC
Confidence 443 49999999987644
No 181
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.60 E-value=0.0027 Score=68.10 Aligned_cols=200 Identities=14% Similarity=0.171 Sum_probs=124.4
Q ss_pred hhHHHHHHHHHhhcCCCeEEEEEcCCCCcHHHHH-HHHHhhhccCCCCccEEEEEEEcCc---ccHHHHHHHHHHHcCCC
Q 045686 157 LDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLL-KKLNNKFRDTGHDFDLVIWVKVSRD---ANLEKIQESILRRFEIP 232 (885)
Q Consensus 157 r~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa-~~v~~~~~~~~~~f~~~~wv~v~~~---~~~~~~~~~i~~~l~~~ 232 (885)
|.+..++|..||.+....+|.|.||-|+||+.|+ .++..+.+ . +..+.+.+- .+-......++.++|..
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r~---~----vL~IDC~~i~~ar~D~~~I~~lA~qvGY~ 73 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDRK---N----VLVIDCDQIVKARGDAAFIKNLASQVGYF 73 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCCC---C----EEEEEChHhhhccChHHHHHHHHHhcCCC
Confidence 5678899999999988999999999999999999 77765542 1 666665432 23445566666666543
Q ss_pred c-----------------------cccCCCChhHHHHHHHH----Hhc--------------------------CCCeEE
Q 045686 233 D-----------------------QMWIGKDEDGRANEILS----NLR--------------------------GKKFVL 259 (885)
Q Consensus 233 ~-----------------------~~~~~~~~~~~~~~l~~----~l~--------------------------~k~~Ll 259 (885)
. ..+ ..+.+.....+.+ .|+ .++=++
T Consensus 74 PvFsw~nSiss~IDLa~qGltGqKaGf-Ses~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVV 152 (431)
T PF10443_consen 74 PVFSWMNSISSFIDLAVQGLTGQKAGF-SESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVV 152 (431)
T ss_pred cchHHHHHHHHHHHHHHhhccccccCC-CCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEE
Confidence 2 001 1222222222111 111 125589
Q ss_pred EEecCCCcccc--------ccccccccccccCCCCCEEEEEcCChhHHh----hhc--ccceeeccCCChHHHHHHHHHH
Q 045686 260 LLDDVWERLDL--------SKVGVSDLLDDSSQTGSKIVFTTRSEEVCG----EMG--ARRRFRVECLSPEAALDLFRYK 325 (885)
Q Consensus 260 VLDdv~~~~~~--------~~~~~~~~l~~~~~~gs~IivTTR~~~v~~----~~~--~~~~~~l~~L~~~~~~~Lf~~~ 325 (885)
|+|+.-...+- .++...+ ...+-.+||++|-+..... .+. ..+.+.|...+++.|..+...+
T Consensus 153 VIdnF~~k~~~~~~iy~~laeWAa~L----v~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~ 228 (431)
T PF10443_consen 153 VIDNFLHKAEENDFIYDKLAEWAASL----VQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQ 228 (431)
T ss_pred EEcchhccCcccchHHHHHHHHHHHH----HhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHH
Confidence 99998653221 1111111 2334568999998755433 332 3357889999999999999988
Q ss_pred hcCcccC-------------Cc----cchHHHHHHHHHHhCCchhHHHHHHHHHhcCCCh
Q 045686 326 VGEDVYS-------------SH----FEISNLAQTVVEECRGLPLALVTIGHAMASRMGP 368 (885)
Q Consensus 326 ~~~~~~~-------------~~----~~~~~~~~~I~~~c~GlPLai~~~~~~l~~~~~~ 368 (885)
....... .. ....+-....++.+||=-.=+..+++.++...++
T Consensus 229 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p 288 (431)
T PF10443_consen 229 LDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESP 288 (431)
T ss_pred hcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCH
Confidence 8543110 00 1123345677788899888899999998876443
No 182
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.59 E-value=6.7e-06 Score=72.11 Aligned_cols=83 Identities=24% Similarity=0.349 Sum_probs=42.8
Q ss_pred HHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCchhhhcccccceeeccCCcccccChhhhccccccEeecCCcc
Q 045686 542 LLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPEEIGRLKNLHHLNLSNTSIGCLPTAIKRLIKLKVLLLDGIQ 621 (885)
Q Consensus 542 L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~ 621 (885)
.++++|.++. +|..+-..++.+..|+|++| .+..+|..+..++.|+.|+++.|.+...|.-|..|.+|-.|+..+|.
T Consensus 58 i~ls~N~fk~--fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na 134 (177)
T KOG4579|consen 58 ISLSDNGFKK--FPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENA 134 (177)
T ss_pred Eecccchhhh--CCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCc
Confidence 3344444444 45444444445555555555 55555555555555555555555555555555555555555555553
Q ss_pred cccccCC
Q 045686 622 CHLSIPE 628 (885)
Q Consensus 622 ~l~~lp~ 628 (885)
...+|.
T Consensus 135 -~~eid~ 140 (177)
T KOG4579|consen 135 -RAEIDV 140 (177)
T ss_pred -cccCcH
Confidence 344443
No 183
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.58 E-value=0.00035 Score=70.24 Aligned_cols=131 Identities=18% Similarity=0.330 Sum_probs=74.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--c----------cEEEEEEEcC----cccHH---------------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--F----------DLVIWVKVSR----DANLE--------------- 219 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f----------~~~~wv~v~~----~~~~~--------------- 219 (885)
.++.+++|+|+.|+|||||++.++....+..+. + ..+.++.-.. ..++.
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~ 103 (210)
T cd03269 24 EKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKE 103 (210)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCCcCCcCCcHHHHHHHHHHHcCCChH
Confidence 567899999999999999999999875432121 1 1122222110 01111
Q ss_pred ---HHHHHHHHHcCCCccc---c-CCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCCCCCEEEE
Q 045686 220 ---KIQESILRRFEIPDQM---W-IGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQTGSKIVF 291 (885)
Q Consensus 220 ---~~~~~i~~~l~~~~~~---~-~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~gs~Iiv 291 (885)
+...++++.+++.... . .-+..+...-.+.+.+..++-++++|+..+..|........ .+......|..||+
T Consensus 104 ~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~ 183 (210)
T cd03269 104 EARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVIL 183 (210)
T ss_pred HHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 1223445555553210 0 11223333345677778888899999998877654331111 11112234788999
Q ss_pred EcCChhHHhh
Q 045686 292 TTRSEEVCGE 301 (885)
Q Consensus 292 TTR~~~v~~~ 301 (885)
+|++.+.+..
T Consensus 184 ~sH~~~~~~~ 193 (210)
T cd03269 184 STHQMELVEE 193 (210)
T ss_pred ECCCHHHHHH
Confidence 9999876544
No 184
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.58 E-value=1.3e-05 Score=93.46 Aligned_cols=133 Identities=24% Similarity=0.278 Sum_probs=92.1
Q ss_pred ceEEEecccCccccccc--ccCCCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCchhhhcccccce
Q 045686 514 EAVRLSLWGSSIDFLAL--VEAPSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPEEIGRLKNLHH 591 (885)
Q Consensus 514 ~~~~l~l~~~~i~~~~~--~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~ 591 (885)
++++|++.+...-.... .-...+|.|++|.+.+-.+....+ ...+.++++|+.||+|++ +++.+ ..+++|++|+.
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF-~~lc~sFpNL~sLDIS~T-nI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDF-SQLCASFPNLRSLDISGT-NISNL-SGISRLKNLQV 199 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhH-HHHhhccCccceeecCCC-CccCc-HHHhccccHHH
Confidence 56777776543211101 112468999999998876643111 234678999999999999 89988 67999999999
Q ss_pred eeccCCcccccC--hhhhccccccEeecCCccccccc--CC---cccccCcccceeccccccccc
Q 045686 592 LNLSNTSIGCLP--TAIKRLIKLKVLLLDGIQCHLSI--PE---GVISSLSSLQVFSCFSTELVE 649 (885)
Q Consensus 592 L~Ls~~~i~~lp--~~i~~L~~L~~L~l~~~~~l~~l--p~---~~i~~L~~L~~L~l~~~~~~~ 649 (885)
|.+++-.+..-+ ..+.+|++|++||+|.......- .. ..-..|++|+.||++++.+..
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 999987775433 24778999999999987532211 10 002358999999999887654
No 185
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=97.58 E-value=0.00029 Score=79.49 Aligned_cols=134 Identities=22% Similarity=0.291 Sum_probs=82.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCcc-----EEEEEEEcCcccHH--------------------------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFD-----LVIWVKVSRDANLE-------------------------- 219 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~-----~~~wv~v~~~~~~~-------------------------- 219 (885)
..+..|+|+|..|+|||||.+.+........+... .+.++ .|.....
T Consensus 27 ~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l--~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~ 104 (530)
T COG0488 27 NPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYL--SQEPPLDPEKTVLDYVIEGFGELRELLAELEEA 104 (530)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEe--CCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHH
Confidence 46788999999999999999999988754323211 12222 2221100
Q ss_pred ----------------------------HHHHHHHHHcCCCccc---cCCCChhHHHHHHHHHhcCCCeEEEEecCCCcc
Q 045686 220 ----------------------------KIQESILRRFEIPDQM---WIGKDEDGRANEILSNLRGKKFVLLLDDVWERL 268 (885)
Q Consensus 220 ----------------------------~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~ 268 (885)
.-...++..+|..... ..-+....+...|.+.|-.++=+|+||+..+..
T Consensus 105 ~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHL 184 (530)
T COG0488 105 YALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHL 184 (530)
T ss_pred HHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccc
Confidence 1112333344444321 011234455667888899999999999999998
Q ss_pred cccccccc--ccccccCCCCCEEEEEcCChhHHhhhcccceeecc
Q 045686 269 DLSKVGVS--DLLDDSSQTGSKIVFTTRSEEVCGEMGARRRFRVE 311 (885)
Q Consensus 269 ~~~~~~~~--~~l~~~~~~gs~IivTTR~~~v~~~~~~~~~~~l~ 311 (885)
|.+.+... +. ..-+| .+||+|+++.....+. .+++.++
T Consensus 185 D~~~i~WLe~~L---~~~~g-tviiVSHDR~FLd~V~-t~I~~ld 224 (530)
T COG0488 185 DLESIEWLEDYL---KRYPG-TVIVVSHDRYFLDNVA-THILELD 224 (530)
T ss_pred CHHHHHHHHHHH---HhCCC-cEEEEeCCHHHHHHHh-hheEEec
Confidence 87655221 22 23446 8999999998777653 3344443
No 186
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.56 E-value=4.8e-05 Score=88.81 Aligned_cols=109 Identities=21% Similarity=0.202 Sum_probs=57.8
Q ss_pred chhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCC-CcCchhhhcccccceeeccCCcccccChhhhccccccEe
Q 045686 537 PQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDL-NQLPEEIGRLKNLHHLNLSNTSIGCLPTAIKRLIKLKVL 615 (885)
Q Consensus 537 ~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i-~~lp~~i~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L 615 (885)
.+|+.|+++|...-...-|..+-..+|.|+.|.+++-... ..+..-..++++|..||+|+|+++.+ .++++|++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 4666666666532111133333445666777766664111 12233334566777777777766666 466677777776
Q ss_pred ecCCcccccccC-CcccccCcccceeccccccc
Q 045686 616 LLDGIQCHLSIP-EGVISSLSSLQVFSCFSTEL 647 (885)
Q Consensus 616 ~l~~~~~l~~lp-~~~i~~L~~L~~L~l~~~~~ 647 (885)
.+++-. +..-+ -..+-+|++|++||++....
T Consensus 201 ~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~~ 232 (699)
T KOG3665|consen 201 SMRNLE-FESYQDLIDLFNLKKLRVLDISRDKN 232 (699)
T ss_pred hccCCC-CCchhhHHHHhcccCCCeeecccccc
Confidence 666543 22111 01145666677777665543
No 187
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.56 E-value=0.00055 Score=68.97 Aligned_cols=132 Identities=17% Similarity=0.214 Sum_probs=76.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--cc-----------EEEEEEEcC----cccH---------------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FD-----------LVIWVKVSR----DANL--------------- 218 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~-----------~~~wv~v~~----~~~~--------------- 218 (885)
..+.+++|+|..|+|||||++.++....+..+. |+ .+.|+.-.. ..++
T Consensus 35 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~ 114 (214)
T PRK13543 35 DAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHGRRA 114 (214)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEeecCcccccCCcHHHHHHHHHHhcCCcH
Confidence 577899999999999999999999876432221 11 123332110 0111
Q ss_pred HHHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCCCCCEEEEEc
Q 045686 219 EKIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQTGSKIVFTT 293 (885)
Q Consensus 219 ~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~gs~IivTT 293 (885)
.....++++.+++.... ..-+..+...-.+.+.+..++-++++|+..+..|........ .+......|..||++|
T Consensus 115 ~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~s 194 (214)
T PRK13543 115 KQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTT 194 (214)
T ss_pred HHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 11223445555543210 011223444455677777888899999998877655432211 1111223467899999
Q ss_pred CChhHHhhh
Q 045686 294 RSEEVCGEM 302 (885)
Q Consensus 294 R~~~v~~~~ 302 (885)
++.+.+...
T Consensus 195 H~~~~~~~~ 203 (214)
T PRK13543 195 HGAYAAPPV 203 (214)
T ss_pred cChhhhhhh
Confidence 998766544
No 188
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.55 E-value=0.0022 Score=73.37 Aligned_cols=174 Identities=16% Similarity=0.227 Sum_probs=93.3
Q ss_pred CCccchhHHHHHHHHHhh---c---------CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHH
Q 045686 152 GKTVGLDSIISEVWRCIE---D---------HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLE 219 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~---~---------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 219 (885)
.+++|.++.++++.+.+. . ...+-+.++|++|+|||++|+.+++... ..| +.++. .
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~---~~~-----~~i~~----~ 122 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG---VPF-----FSISG----S 122 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC---CCe-----eeccH----H
Confidence 357788877766655442 1 2234588999999999999999988752 222 22221 1
Q ss_pred HHHHHHHHHcCCCccccCCCChhHHHHHHHHHhcCCCeEEEEecCCCcccc------------cccccccc--ccc-cCC
Q 045686 220 KIQESILRRFEIPDQMWIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDL------------SKVGVSDL--LDD-SSQ 284 (885)
Q Consensus 220 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~------------~~~~~~~~--l~~-~~~ 284 (885)
.+.. .. .+.....+...+.......+.+|++||++....- ......+. +.. ...
T Consensus 123 ~~~~----~~-------~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~ 191 (495)
T TIGR01241 123 DFVE----MF-------VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTN 191 (495)
T ss_pred HHHH----HH-------hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCC
Confidence 1111 10 1112222333333444456789999999652100 00000000 000 122
Q ss_pred CCCEEEEEcCChhH-----HhhhcccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCch
Q 045686 285 TGSKIVFTTRSEEV-----CGEMGARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLP 352 (885)
Q Consensus 285 ~gs~IivTTR~~~v-----~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP 352 (885)
.+..||.||...+. .....-...+.+...+.++-.++|+..+.........+ ...+++.+.|..
T Consensus 192 ~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~----l~~la~~t~G~s 260 (495)
T TIGR01241 192 TGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVD----LKAVARRTPGFS 260 (495)
T ss_pred CCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchh----HHHHHHhCCCCC
Confidence 34456666765432 11112345788999999999999988775432222222 457788887744
No 189
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.55 E-value=0.00053 Score=69.01 Aligned_cols=132 Identities=23% Similarity=0.196 Sum_probs=75.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--cc--------------EEEEEEEcC---cc--cH-----------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FD--------------LVIWVKVSR---DA--NL----------- 218 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~--------------~~~wv~v~~---~~--~~----------- 218 (885)
.++.+++|+|+.|+|||||++.++....+..+. |+ .+.++.-.. .+ ++
T Consensus 25 ~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~ 104 (211)
T cd03225 25 KKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENL 104 (211)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcHHHHHHHHHHHc
Confidence 567899999999999999999998865432221 11 122222110 00 11
Q ss_pred -------HHHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCCCC
Q 045686 219 -------EKIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQTG 286 (885)
Q Consensus 219 -------~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~g 286 (885)
.....++++.+++.... ..-+..+...-.+.+.+..++-+++||+..+..|........ .+......|
T Consensus 105 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~ 184 (211)
T cd03225 105 GLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEG 184 (211)
T ss_pred CCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcC
Confidence 11123355555553210 011223444445677788888999999998877654331111 111122347
Q ss_pred CEEEEEcCChhHHhhh
Q 045686 287 SKIVFTTRSEEVCGEM 302 (885)
Q Consensus 287 s~IivTTR~~~v~~~~ 302 (885)
..||++|++.+.+..+
T Consensus 185 ~tvi~~sH~~~~~~~~ 200 (211)
T cd03225 185 KTIIIVTHDLDLLLEL 200 (211)
T ss_pred CEEEEEeCCHHHHHHh
Confidence 8899999998765543
No 190
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.55 E-value=0.0015 Score=75.20 Aligned_cols=190 Identities=15% Similarity=0.136 Sum_probs=102.1
Q ss_pred CCccchhHHHHHHHHHhhcCC-CeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHHHcC
Q 045686 152 GKTVGLDSIISEVWRCIEDHN-EKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILRRFE 230 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~~~-~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~ 230 (885)
.+++|.+..++.+.+++..++ ...+.++|+.|+||||+|+.++...... ...+. ...+.-.....|.....
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~-~~~~~-------~pC~~C~~C~~i~~g~~ 87 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCL-NPPDG-------EPCNECEICKAITNGSL 87 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCC-CCCCC-------CCCCccHHHHHHhcCCC
Confidence 568999999999999997654 4557789999999999999998765321 10000 00011111111111100
Q ss_pred CCcccc---CCCChhHHHHHHHHH-----hcCCCeEEEEecCCCcc--ccccccccccccccCCCCCEEEE-EcCChhHH
Q 045686 231 IPDQMW---IGKDEDGRANEILSN-----LRGKKFVLLLDDVWERL--DLSKVGVSDLLDDSSQTGSKIVF-TTRSEEVC 299 (885)
Q Consensus 231 ~~~~~~---~~~~~~~~~~~l~~~-----l~~k~~LlVLDdv~~~~--~~~~~~~~~~l~~~~~~gs~Iiv-TTR~~~v~ 299 (885)
...... .....++ ...+... ..+++-++|+|++.... ....+...+- .......+|+ ||....+.
T Consensus 88 ~dv~eidaas~~~vd~-ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLE---epp~~~ifIlatt~~~ki~ 163 (559)
T PRK05563 88 MDVIEIDAASNNGVDE-IRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLE---EPPAHVIFILATTEPHKIP 163 (559)
T ss_pred CCeEEeeccccCCHHH-HHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhc---CCCCCeEEEEEeCChhhCc
Confidence 000000 0111221 2222222 23466788999996542 1222211111 2222344444 55444433
Q ss_pred hhh-cccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCchhHHH
Q 045686 300 GEM-GARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPLALV 356 (885)
Q Consensus 300 ~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~ 356 (885)
..+ .....+.+.+++.++....+...+.......+ .+.+..|++.++|.+..+.
T Consensus 164 ~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~---~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 164 ATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYE---DEALRLIARAAEGGMRDAL 218 (559)
T ss_pred HHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 222 22356889999999999999887754332222 2457788999998776443
No 191
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.55 E-value=0.0047 Score=61.36 Aligned_cols=51 Identities=22% Similarity=0.397 Sum_probs=40.4
Q ss_pred cCCCCccchhHHHHHHHHHh----hcCCCeEEEEEcCCCCcHHHHHHHHHhhhcc
Q 045686 149 RPIGKTVGLDSIISEVWRCI----EDHNEKVIGLYGMGGVGKTTLLKKLNNKFRD 199 (885)
Q Consensus 149 ~~~~~~vgr~~~~~~l~~~L----~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~ 199 (885)
.+.+.++|.+..++.|++-. ...+..-+.++|..|+|||++++.+.+....
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~ 78 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYAD 78 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhh
Confidence 34467899999998887644 3345567788999999999999999998853
No 192
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=97.53 E-value=0.00035 Score=69.52 Aligned_cols=124 Identities=19% Similarity=0.204 Sum_probs=70.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh--ccCCCC--ccE---------------EEEEEEcCcccH--HHHHHHHHHHc
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKF--RDTGHD--FDL---------------VIWVKVSRDANL--EKIQESILRRF 229 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~--~~~~~~--f~~---------------~~wv~v~~~~~~--~~~~~~i~~~l 229 (885)
.++.+++|+|.+|+|||||++.++... .+..+. |+. +.+ +.+.... .....+++...
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~--v~q~~~~~~~~~~~~~l~~~ 101 (200)
T cd03217 24 KKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFL--AFQYPPEIPGVKNADFLRYV 101 (200)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEE--eecChhhccCccHHHHHhhc
Confidence 567899999999999999999998873 221111 100 112 1222110 01111222111
Q ss_pred CCCccccCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCCCCCEEEEEcCChhHHhh
Q 045686 230 EIPDQMWIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQTGSKIVFTTRSEEVCGE 301 (885)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~gs~IivTTR~~~v~~~ 301 (885)
. ..-+..+...-.+.+.+..++-++++|+.....|........ .+......|..||++|++.+....
T Consensus 102 ~-----~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~ 169 (200)
T cd03217 102 N-----EGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDY 169 (200)
T ss_pred c-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHH
Confidence 0 012234445556778888899999999998876654331111 111122347889999999876653
No 193
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=97.53 E-value=0.00025 Score=74.63 Aligned_cols=132 Identities=25% Similarity=0.288 Sum_probs=80.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--cc-------------EEEEEEEcCc----ccH-------------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FD-------------LVIWVKVSRD----ANL------------- 218 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~-------------~~~wv~v~~~----~~~------------- 218 (885)
.++.++++.|+.|+|||||.+.+....++..+. +. .+.++.-... .+.
T Consensus 29 ~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~ 108 (293)
T COG1131 29 EPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGL 108 (293)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCC
Confidence 567899999999999999999999887543221 00 1222221111 011
Q ss_pred -----HHHHHHHHHHcCCCccc---c-CCCChhHHHHHHHHHhcCCCeEEEEecCCCcccccccccc-ccccccCCCC-C
Q 045686 219 -----EKIQESILRRFEIPDQM---W-IGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVS-DLLDDSSQTG-S 287 (885)
Q Consensus 219 -----~~~~~~i~~~l~~~~~~---~-~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~-~~l~~~~~~g-s 287 (885)
.+...++++.+++.... . .-+......-.+...|..++-++|||+..+..|....... -.+......| .
T Consensus 109 ~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~ 188 (293)
T COG1131 109 SKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGV 188 (293)
T ss_pred ChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCc
Confidence 22345677777776411 0 1122334444577888899999999999988775433111 1112233344 7
Q ss_pred EEEEEcCChhHHhhh
Q 045686 288 KIVFTTRSEEVCGEM 302 (885)
Q Consensus 288 ~IivTTR~~~v~~~~ 302 (885)
.|++||+..+.+..+
T Consensus 189 tvlissH~l~e~~~~ 203 (293)
T COG1131 189 TILLSTHILEEAEEL 203 (293)
T ss_pred EEEEeCCcHHHHHHh
Confidence 999999998776665
No 194
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=97.52 E-value=0.00059 Score=68.76 Aligned_cols=132 Identities=19% Similarity=0.201 Sum_probs=74.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--cc---------EEEEEEEcCc----c--cH---------------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FD---------LVIWVKVSRD----A--NL--------------- 218 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~---------~~~wv~v~~~----~--~~--------------- 218 (885)
.++.+++|+|+.|+|||||++.++....+..+. |+ .+.++.-... + ++
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~ 102 (213)
T cd03235 23 KPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLF 102 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccccccCCCCcHHHHHHhccccccccc
Confidence 567899999999999999999998875432221 11 1222221000 0 00
Q ss_pred -------HHHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCCCC
Q 045686 219 -------EKIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQTG 286 (885)
Q Consensus 219 -------~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~g 286 (885)
.+...++++.+++.... ..-+..+...-.+.+.+..++-+++||+..+..|........ .+......|
T Consensus 103 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~ 182 (213)
T cd03235 103 RRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREG 182 (213)
T ss_pred cCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcC
Confidence 11223444555543210 011223344445667777888999999998877654331111 111122257
Q ss_pred CEEEEEcCChhHHhhh
Q 045686 287 SKIVFTTRSEEVCGEM 302 (885)
Q Consensus 287 s~IivTTR~~~v~~~~ 302 (885)
..||++|++.+.+...
T Consensus 183 ~tvi~~sH~~~~~~~~ 198 (213)
T cd03235 183 MTILVVTHDLGLVLEY 198 (213)
T ss_pred CEEEEEeCCHHHHHHh
Confidence 8899999998765543
No 195
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.51 E-value=0.0022 Score=68.05 Aligned_cols=194 Identities=14% Similarity=0.147 Sum_probs=106.6
Q ss_pred CCccchhHHHHHHHHHhhcCCC-eEEEEEcCCCCcHHHHHHHHHhhhccC-------------CCCccEEEEEEEcCccc
Q 045686 152 GKTVGLDSIISEVWRCIEDHNE-KVIGLYGMGGVGKTTLLKKLNNKFRDT-------------GHDFDLVIWVKVSRDAN 217 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~~~-------------~~~f~~~~wv~v~~~~~ 217 (885)
.+++|.+..++.+.+.+..++. ....++|+.|+||+++|..++...-.. ..|.| ..|+.-.-..+
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPD-l~~i~p~~~~~ 82 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPD-LLWVEPTYQHQ 82 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCC-EEEEecccccc
Confidence 3578999999999999987764 788999999999999998887765321 11222 23332110000
Q ss_pred HHHHHHHHHHHcCCCccccCCCChhHHHHHHHHHh-----cCCCeEEEEecCCCccc--cccccccccccccCCCCCEEE
Q 045686 218 LEKIQESILRRFEIPDQMWIGKDEDGRANEILSNL-----RGKKFVLLLDDVWERLD--LSKVGVSDLLDDSSQTGSKIV 290 (885)
Q Consensus 218 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVLDdv~~~~~--~~~~~~~~~l~~~~~~gs~Ii 290 (885)
-..+-..-++..|...........+ ..+.+.+.+ .+++-++|+|++..... ...+... +. ... .+.+|
T Consensus 83 g~~~~~~~~~~~~~~~~~~~~I~id-~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~--LE-EPp-~~~fI 157 (314)
T PRK07399 83 GKLITASEAEEAGLKRKAPPQIRLE-QIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKT--LE-EPG-NGTLI 157 (314)
T ss_pred ccccchhhhhhccccccccccCcHH-HHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHH--Hh-CCC-CCeEE
Confidence 0001111112222111000111122 233344443 35677999999865432 1122111 11 222 34555
Q ss_pred EEcCC-hhHHhhh-cccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCchhHHHH
Q 045686 291 FTTRS-EEVCGEM-GARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPLALVT 357 (885)
Q Consensus 291 vTTR~-~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~ 357 (885)
++|.+ ..+...+ +-...+.+.++++++..+.+.+....... ......++..++|.|..+..
T Consensus 158 Li~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~------~~~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 158 LIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEIL------NINFPELLALAQGSPGAAIA 220 (314)
T ss_pred EEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccc------hhHHHHHHHHcCCCHHHHHH
Confidence 55544 3333322 23468899999999999999876532211 11136789999999976654
No 196
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.51 E-value=0.00054 Score=68.57 Aligned_cols=131 Identities=19% Similarity=0.276 Sum_probs=75.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--cc-----------EEEEEEEcC--cc---cH--------------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FD-----------LVIWVKVSR--DA---NL-------------- 218 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~-----------~~~wv~v~~--~~---~~-------------- 218 (885)
.++.+++|+|+.|+|||||++.++....+..+. ++ .+.|+.-.. .+ ++
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~ 103 (205)
T cd03226 24 YAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAG 103 (205)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHHHhhhhhhcCcc
Confidence 567899999999999999999999875432221 11 122222110 00 00
Q ss_pred HHHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCCCCCEEEEEc
Q 045686 219 EKIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQTGSKIVFTT 293 (885)
Q Consensus 219 ~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~gs~IivTT 293 (885)
.....++++.+++.... ..-+..+...-.+.+.+..++-+++||+..+..|........ .+......|..||++|
T Consensus 104 ~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~s 183 (205)
T cd03226 104 NEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVIT 183 (205)
T ss_pred HHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 01234455666654211 011223444445777788889999999998877654331111 1111223477899999
Q ss_pred CChhHHhh
Q 045686 294 RSEEVCGE 301 (885)
Q Consensus 294 R~~~v~~~ 301 (885)
++.+.+..
T Consensus 184 H~~~~~~~ 191 (205)
T cd03226 184 HDYEFLAK 191 (205)
T ss_pred CCHHHHHH
Confidence 99876544
No 197
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.51 E-value=0.0002 Score=69.75 Aligned_cols=127 Identities=21% Similarity=0.207 Sum_probs=69.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHHHcCCCcc---ccC----------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILRRFEIPDQ---MWI---------- 237 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~---~~~---------- 237 (885)
.++.+++|+|+.|+|||||++.++....+ ..+.+.+.-........-.......++.... ...
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~~----~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~ 99 (178)
T cd03229 24 EAGEIVALLGPSGSGKSTLLRCIAGLEEP----DSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIAL 99 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC----CceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheee
Confidence 56789999999999999999999876532 2233332110000000000011111110000 000
Q ss_pred -CCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCCC-CCEEEEEcCChhHHhh
Q 045686 238 -GKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQT-GSKIVFTTRSEEVCGE 301 (885)
Q Consensus 238 -~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~-gs~IivTTR~~~v~~~ 301 (885)
-+..+...-.+.+.+..++-++++|+.....|........ .+...... |..||++|++.+....
T Consensus 100 ~lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~ 166 (178)
T cd03229 100 GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAAR 166 (178)
T ss_pred cCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 1123344445777888899999999998877654332111 11112223 6789999999776553
No 198
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.50 E-value=0.00057 Score=69.04 Aligned_cols=132 Identities=17% Similarity=0.198 Sum_probs=75.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--cc-----------------EEEEEEEcC----cccH---------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FD-----------------LVIWVKVSR----DANL--------- 218 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~-----------------~~~wv~v~~----~~~~--------- 218 (885)
.++.+++|+|++|+|||||++.++....+..+. |+ .+.++.-.. ..++
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~ 106 (216)
T TIGR00960 27 TKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLR 106 (216)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCccccccccHHHHHHHHHH
Confidence 567899999999999999999998865432111 11 122221100 0011
Q ss_pred ---------HHHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCC
Q 045686 219 ---------EKIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQ 284 (885)
Q Consensus 219 ---------~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~ 284 (885)
..-..++++.+++.... ..-+..+...-.+.+.+..++-+++||+..+..|........ .+.....
T Consensus 107 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 186 (216)
T TIGR00960 107 IIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNR 186 (216)
T ss_pred hcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH
Confidence 11123445555553211 011223444455778888899999999999887754331111 1111223
Q ss_pred CCCEEEEEcCChhHHhhh
Q 045686 285 TGSKIVFTTRSEEVCGEM 302 (885)
Q Consensus 285 ~gs~IivTTR~~~v~~~~ 302 (885)
.|..||++|++.+....+
T Consensus 187 ~~~tii~vsH~~~~~~~~ 204 (216)
T TIGR00960 187 RGTTVLVATHDINLVETY 204 (216)
T ss_pred CCCEEEEEeCCHHHHHHh
Confidence 477899999998765543
No 199
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=97.50 E-value=0.00051 Score=73.20 Aligned_cols=130 Identities=24% Similarity=0.251 Sum_probs=76.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--cc-------------EEEEEEEcCcc------cHH----------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FD-------------LVIWVKVSRDA------NLE---------- 219 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~-------------~~~wv~v~~~~------~~~---------- 219 (885)
.++.+++|+|+.|+|||||++.++.-..+..+. ++ .+.++ .+.. ++.
T Consensus 17 ~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~--~q~~~~~~~~tv~e~l~~~~~~~ 94 (302)
T TIGR01188 17 REGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIV--PQYASVDEDLTGRENLEMMGRLY 94 (302)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEe--cCCCCCCCCCcHHHHHHHHHHHc
Confidence 567899999999999999999999875432221 10 12222 1111 111
Q ss_pred --------HHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCCCC
Q 045686 220 --------KIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQTG 286 (885)
Q Consensus 220 --------~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~g 286 (885)
....++++.+++.... ..-+..+...-.+.+.+..++-+++||+..+..|........ .+......|
T Consensus 95 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g 174 (302)
T TIGR01188 95 GLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEG 174 (302)
T ss_pred CCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCC
Confidence 1133455666654211 011223444456778888899999999999887754331111 111122347
Q ss_pred CEEEEEcCChhHHhhh
Q 045686 287 SKIVFTTRSEEVCGEM 302 (885)
Q Consensus 287 s~IivTTR~~~v~~~~ 302 (885)
..||+||++.+.+...
T Consensus 175 ~tvi~~sH~~~~~~~~ 190 (302)
T TIGR01188 175 VTILLTTHYMEEADKL 190 (302)
T ss_pred CEEEEECCCHHHHHHh
Confidence 8999999998765543
No 200
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.48 E-value=0.00054 Score=70.36 Aligned_cols=131 Identities=17% Similarity=0.235 Sum_probs=76.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--cc--EEEEEEEc----CcccHHHH--------------HHHHHHHc
Q 045686 172 NEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FD--LVIWVKVS----RDANLEKI--------------QESILRRF 229 (885)
Q Consensus 172 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~--~~~wv~v~----~~~~~~~~--------------~~~i~~~l 229 (885)
.+.+++|+|+.|+|||||++.++....+..+. ++ .+.++.-. ...++.+. ..++++.+
T Consensus 24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l 103 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPL 103 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHc
Confidence 57899999999999999999999876543222 11 12222110 01112111 23345555
Q ss_pred CCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-ccccc-CCCCCEEEEEcCChhHHhhh
Q 045686 230 EIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDS-SQTGSKIVFTTRSEEVCGEM 302 (885)
Q Consensus 230 ~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~-~~~gs~IivTTR~~~v~~~~ 302 (885)
++.... ..-+..+...-.+...+..++-+++||+.....|........ .+... ...|..||++|++.+.+..+
T Consensus 104 ~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~ 182 (246)
T cd03237 104 QIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYL 182 (246)
T ss_pred CCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 553210 011233444455778888899999999998887765432111 11111 23478899999998766543
No 201
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.48 E-value=0.00053 Score=69.42 Aligned_cols=130 Identities=23% Similarity=0.267 Sum_probs=75.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--c------------------cEEEEEEEc----CcccH--------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--F------------------DLVIWVKVS----RDANL-------- 218 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f------------------~~~~wv~v~----~~~~~-------- 218 (885)
.++.+++|+|+.|+|||||++.++....+..+. | ..+.++.-. ...++
T Consensus 28 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~ 107 (218)
T cd03255 28 EKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPL 107 (218)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHH
Confidence 567899999999999999999998875432111 1 112222110 00011
Q ss_pred ----------HHHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccC
Q 045686 219 ----------EKIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSS 283 (885)
Q Consensus 219 ----------~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~ 283 (885)
.....++++.+++.... ..-+..+...-.+.+.+..++-+++||+..+..|........ .+....
T Consensus 108 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~ 187 (218)
T cd03255 108 LLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELN 187 (218)
T ss_pred hhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 11234455666654210 011223344445777888889999999998877654332111 111122
Q ss_pred C-CCCEEEEEcCChhHHh
Q 045686 284 Q-TGSKIVFTTRSEEVCG 300 (885)
Q Consensus 284 ~-~gs~IivTTR~~~v~~ 300 (885)
. .|..||++|++.+...
T Consensus 188 ~~~~~tii~~sH~~~~~~ 205 (218)
T cd03255 188 KEAGTTIVVVTHDPELAE 205 (218)
T ss_pred HhcCCeEEEEECCHHHHh
Confidence 2 4788999999987654
No 202
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=97.48 E-value=0.00071 Score=68.64 Aligned_cols=131 Identities=21% Similarity=0.259 Sum_probs=74.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--cc---------EEEEEEEcCcc------cH---------------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FD---------LVIWVKVSRDA------NL--------------- 218 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~---------~~~wv~v~~~~------~~--------------- 218 (885)
.++.+++|+|..|+|||||++.++....+..+. |+ .+.|+.-.... ++
T Consensus 4 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~ 83 (223)
T TIGR03771 4 DKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHIGWL 83 (223)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccccccccc
Confidence 357899999999999999999999875432221 11 12222211000 01
Q ss_pred -------HHHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCCCC
Q 045686 219 -------EKIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQTG 286 (885)
Q Consensus 219 -------~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~g 286 (885)
.....++++.+++.... ..-+..+...-.+.+.+..++-++++|+.....|........ .+......|
T Consensus 84 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~ 163 (223)
T TIGR03771 84 RRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAG 163 (223)
T ss_pred cCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcC
Confidence 11233445555553210 011223334446777888899999999998877654331111 111122347
Q ss_pred CEEEEEcCChhHHhh
Q 045686 287 SKIVFTTRSEEVCGE 301 (885)
Q Consensus 287 s~IivTTR~~~v~~~ 301 (885)
..||++|++.+....
T Consensus 164 ~tvii~sH~~~~~~~ 178 (223)
T TIGR03771 164 TAILMTTHDLAQAMA 178 (223)
T ss_pred CEEEEEeCCHHHHHH
Confidence 899999999875443
No 203
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.47 E-value=0.00094 Score=80.88 Aligned_cols=155 Identities=15% Similarity=0.173 Sum_probs=87.0
Q ss_pred CCccchhHHHHHHHHHhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhccCC--CC-ccEE-EEEEEcCcccHHHHHHHHHH
Q 045686 152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTG--HD-FDLV-IWVKVSRDANLEKIQESILR 227 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~--~~-f~~~-~wv~v~~~~~~~~~~~~i~~ 227 (885)
.+++||+.+++++++.|.......+.++|++|+|||++|+.++....... .. .... +++.++ .+..
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~------~l~a---- 247 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMG------ALVA---- 247 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehh------hhhh----
Confidence 56899999999999999776666777999999999999999998763110 00 1122 222221 1110
Q ss_pred HcCCCccccCCCChhHHHHHHHHHh--cCCCeEEEEecCCCccc---------cccccccccccccCCCCCEEEEEcCCh
Q 045686 228 RFEIPDQMWIGKDEDGRANEILSNL--RGKKFVLLLDDVWERLD---------LSKVGVSDLLDDSSQTGSKIVFTTRSE 296 (885)
Q Consensus 228 ~l~~~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVLDdv~~~~~---------~~~~~~~~~l~~~~~~gs~IivTTR~~ 296 (885)
+.. .....+.....+.+.+ .+++.+|++|++..... ...+..+. .....-++|-+|...
T Consensus 248 --g~~----~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~----l~~g~l~~IgaTt~~ 317 (857)
T PRK10865 248 --GAK----YRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPA----LARGELHCVGATTLD 317 (857)
T ss_pred --ccc----hhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcch----hhcCCCeEEEcCCCH
Confidence 000 1112233333333322 24689999999865321 11122221 122234566555554
Q ss_pred hHHhhh-------cccceeeccCCChHHHHHHHHHHh
Q 045686 297 EVCGEM-------GARRRFRVECLSPEAALDLFRYKV 326 (885)
Q Consensus 297 ~v~~~~-------~~~~~~~l~~L~~~~~~~Lf~~~~ 326 (885)
+....+ .-...+.+...+.++...+++...
T Consensus 318 e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 318 EYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred HHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 431111 111356677778899999886654
No 204
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=97.47 E-value=0.00071 Score=70.05 Aligned_cols=61 Identities=13% Similarity=0.165 Sum_probs=40.1
Q ss_pred hhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCCCCCEEEEEcCChhHHhh
Q 045686 241 EDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQTGSKIVFTTRSEEVCGE 301 (885)
Q Consensus 241 ~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~gs~IivTTR~~~v~~~ 301 (885)
.+...-.+.+.+..++-+++||+..+..|........ .+......|..||++|++.+....
T Consensus 149 G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~ 210 (248)
T PRK09580 149 GEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDY 210 (248)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh
Confidence 3444455777888889999999998887765432211 111122347789999999876654
No 205
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.46 E-value=0.0029 Score=76.36 Aligned_cols=46 Identities=24% Similarity=0.405 Sum_probs=38.5
Q ss_pred CCccchhHHHHHHHHHhh------cCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 045686 152 GKTVGLDSIISEVWRCIE------DHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~------~~~~~vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
.+.+|.++.++.|.+++. ....+++.++|++|+|||++|+.+++..
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l 371 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL 371 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999988763 1345689999999999999999999887
No 206
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=97.46 E-value=0.00066 Score=68.89 Aligned_cols=132 Identities=16% Similarity=0.138 Sum_probs=73.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--ccEE-EE-EE----EcCcccHH------------------HHHHH
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FDLV-IW-VK----VSRDANLE------------------KIQES 224 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~~~-~w-v~----v~~~~~~~------------------~~~~~ 224 (885)
..+.+++|+|+.|+|||||++.++....+..+. ++.. ++ .. +....++. ....+
T Consensus 46 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ 125 (224)
T cd03220 46 PRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFNPELTGRENIYLNGRLLGLSRKEIDEKIDE 125 (224)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhcccccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 567899999999999999999999875432111 1110 00 00 00011111 11233
Q ss_pred HHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCCCCCEEEEEcCChhHH
Q 045686 225 ILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQTGSKIVFTTRSEEVC 299 (885)
Q Consensus 225 i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~gs~IivTTR~~~v~ 299 (885)
+++.+++.... ..-+..+...-.+.+.+..++-++++|+..+..|........ .+......|..||++|++.+.+
T Consensus 126 ~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~ 205 (224)
T cd03220 126 IIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSI 205 (224)
T ss_pred HHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 44444543210 011223344445778888899999999999887765321111 1111223467899999998765
Q ss_pred hhh
Q 045686 300 GEM 302 (885)
Q Consensus 300 ~~~ 302 (885)
...
T Consensus 206 ~~~ 208 (224)
T cd03220 206 KRL 208 (224)
T ss_pred HHh
Confidence 543
No 207
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.45 E-value=0.00031 Score=69.31 Aligned_cols=127 Identities=22% Similarity=0.217 Sum_probs=71.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--cc----------------EEEEEEEcC---cc--cHH--------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FD----------------LVIWVKVSR---DA--NLE-------- 219 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~----------------~~~wv~v~~---~~--~~~-------- 219 (885)
.++.+++|+|+.|+|||||++.+.....+..+. |+ .+.++.-.. .+ ++.
T Consensus 16 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~~nl~~~~~ 95 (190)
T TIGR01166 16 ERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPL 95 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccccHHHHHHHHHH
Confidence 567899999999999999999998765432111 10 112222110 01 110
Q ss_pred ----------HHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCC
Q 045686 220 ----------KIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQ 284 (885)
Q Consensus 220 ----------~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~ 284 (885)
+...++++.+++.... ..-+..+...-.+.+.+...+-++++|+.....|........ .+.....
T Consensus 96 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~ 175 (190)
T TIGR01166 96 NLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRA 175 (190)
T ss_pred HcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 1123344555543210 011223344445677778888999999998877654332111 1111223
Q ss_pred CCCEEEEEcCChh
Q 045686 285 TGSKIVFTTRSEE 297 (885)
Q Consensus 285 ~gs~IivTTR~~~ 297 (885)
.|..||++|++.+
T Consensus 176 ~~~tili~sH~~~ 188 (190)
T TIGR01166 176 EGMTVVISTHDVD 188 (190)
T ss_pred cCCEEEEEeeccc
Confidence 4788999998864
No 208
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.45 E-value=0.00093 Score=66.75 Aligned_cols=133 Identities=15% Similarity=0.220 Sum_probs=75.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--ccE-------------EEEEEEc----CcccH-------------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FDL-------------VIWVKVS----RDANL------------- 218 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~~-------------~~wv~v~----~~~~~------------- 218 (885)
.++.+++|+|+.|+|||||++.++....+..+. |+. +.++.-. ...++
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~ 104 (204)
T PRK13538 25 NAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLHGP 104 (204)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeCCccccCcCCcHHHHHHHHHHhcCc
Confidence 567899999999999999999999875432221 111 1111100 00011
Q ss_pred --HHHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCCCCCEEEE
Q 045686 219 --EKIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQTGSKIVF 291 (885)
Q Consensus 219 --~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~gs~Iiv 291 (885)
.+...++++.+++.... ..-+..+...-.+.+.+...+-++++|+..+..|........ .+......|..||+
T Consensus 105 ~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii 184 (204)
T PRK13538 105 GDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVIL 184 (204)
T ss_pred cHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 11223455555553210 011223344445777788889999999998877654432111 11112234678999
Q ss_pred EcCChhHHhhhc
Q 045686 292 TTRSEEVCGEMG 303 (885)
Q Consensus 292 TTR~~~v~~~~~ 303 (885)
+|++......+.
T Consensus 185 ~sh~~~~i~~~~ 196 (204)
T PRK13538 185 TTHQDLPVASDK 196 (204)
T ss_pred EecChhhhccCC
Confidence 999887665543
No 209
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.45 E-value=0.00097 Score=67.55 Aligned_cols=129 Identities=22% Similarity=0.207 Sum_probs=73.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--cc-------------EEEEEEEcCcc------cH-----------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FD-------------LVIWVKVSRDA------NL----------- 218 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~-------------~~~wv~v~~~~------~~----------- 218 (885)
.++.+++|+|+.|+|||||++.++....+..+. |+ .+.++ .+.. ++
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~--~q~~~~~~~~tv~~~l~~~~~~~ 101 (220)
T cd03265 24 RRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIV--FQDLSVDDELTGWENLYIHARLY 101 (220)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEe--cCCccccccCcHHHHHHHHHHHc
Confidence 467899999999999999999999865332111 10 11222 1111 11
Q ss_pred -------HHHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCC-C
Q 045686 219 -------EKIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQ-T 285 (885)
Q Consensus 219 -------~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~-~ 285 (885)
.....++++.+++.... ..-+..+...-.+.+.+..++-++++|+..+..|........ .+..... .
T Consensus 102 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~ 181 (220)
T cd03265 102 GVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEF 181 (220)
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhc
Confidence 11123445555553210 011223344445777788888999999998877755432211 1111222 3
Q ss_pred CCEEEEEcCChhHHhh
Q 045686 286 GSKIVFTTRSEEVCGE 301 (885)
Q Consensus 286 gs~IivTTR~~~v~~~ 301 (885)
|..||++|++.+.+..
T Consensus 182 ~~tvi~~tH~~~~~~~ 197 (220)
T cd03265 182 GMTILLTTHYMEEAEQ 197 (220)
T ss_pred CCEEEEEeCCHHHHHH
Confidence 7789999999876544
No 210
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=97.45 E-value=0.0011 Score=67.51 Aligned_cols=130 Identities=22% Similarity=0.278 Sum_probs=74.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--cc----------------------EEEEEEEcCccc------H--
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FD----------------------LVIWVKVSRDAN------L-- 218 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~----------------------~~~wv~v~~~~~------~-- 218 (885)
..+.+++|+|..|+|||||++.++....+..+. |+ .+.++. +.+. +
T Consensus 32 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~--q~~~~~~~~tv~e 109 (224)
T TIGR02324 32 NAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVS--QFLRVIPRVSALE 109 (224)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEe--cccccCCCccHHH
Confidence 567899999999999999999999875432121 10 112221 1110 0
Q ss_pred ----------------HHHHHHHHHHcCCCcc--c---cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc
Q 045686 219 ----------------EKIQESILRRFEIPDQ--M---WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD 277 (885)
Q Consensus 219 ----------------~~~~~~i~~~l~~~~~--~---~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~ 277 (885)
.+...++++.+++... . ..-+..+...-.+.+.+..++-++++|+.....|........
T Consensus 110 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~ 189 (224)
T TIGR02324 110 VVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVV 189 (224)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH
Confidence 1122344555555321 0 011223344445677777888899999998877654332211
Q ss_pred -cccccCCCCCEEEEEcCChhHHhhh
Q 045686 278 -LLDDSSQTGSKIVFTTRSEEVCGEM 302 (885)
Q Consensus 278 -~l~~~~~~gs~IivTTR~~~v~~~~ 302 (885)
.+......|..||++|++.+.+..+
T Consensus 190 ~~l~~~~~~g~tii~vsH~~~~~~~~ 215 (224)
T TIGR02324 190 ELIAEAKARGAALIGIFHDEEVRELV 215 (224)
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 1111223478899999998766543
No 211
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=97.45 E-value=0.00066 Score=68.81 Aligned_cols=130 Identities=25% Similarity=0.289 Sum_probs=73.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--cc-------------EEEEEEEc----CcccHH------------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FD-------------LVIWVKVS----RDANLE------------ 219 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~-------------~~~wv~v~----~~~~~~------------ 219 (885)
.++.+++|+|++|+|||||++.++....+..+. ++ .+.++.-. ...++.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~ 105 (220)
T cd03263 26 YKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGL 105 (220)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHHHHHHHHHHcCC
Confidence 567899999999999999999999875432221 11 11222100 000111
Q ss_pred ------HHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCCCCCE
Q 045686 220 ------KIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQTGSK 288 (885)
Q Consensus 220 ------~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~gs~ 288 (885)
....++++.+++.... ..-+..+...-.+.+.+..++-++++|++....|........ .+.... .+..
T Consensus 106 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~t 184 (220)
T cd03263 106 PKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVR-KGRS 184 (220)
T ss_pred CHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHh-cCCE
Confidence 1123445555553210 011223334445677788899999999998877654332111 111122 2478
Q ss_pred EEEEcCChhHHhh
Q 045686 289 IVFTTRSEEVCGE 301 (885)
Q Consensus 289 IivTTR~~~v~~~ 301 (885)
||++|++.+.+..
T Consensus 185 ii~~sH~~~~~~~ 197 (220)
T cd03263 185 IILTTHSMDEAEA 197 (220)
T ss_pred EEEEcCCHHHHHH
Confidence 9999999876544
No 212
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=97.45 E-value=0.00078 Score=68.17 Aligned_cols=131 Identities=22% Similarity=0.201 Sum_probs=73.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--cc-------------EEEEEEEc----CcccHH------------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FD-------------LVIWVKVS----RDANLE------------ 219 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~-------------~~~wv~v~----~~~~~~------------ 219 (885)
..+.+++|+|..|+|||||++.++....+..+. |+ .+.|+.-. ...++.
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~ 108 (218)
T cd03266 29 KPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGL 108 (218)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHcCC
Confidence 567899999999999999999999875432221 11 12222100 001111
Q ss_pred ------HHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCCCCCE
Q 045686 220 ------KIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQTGSK 288 (885)
Q Consensus 220 ------~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~gs~ 288 (885)
....++++.+++.... ..-+..+...-.+.+.+..++-+++||++....|........ .+......|..
T Consensus 109 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~t 188 (218)
T cd03266 109 KGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKC 188 (218)
T ss_pred CHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCE
Confidence 1223345555553210 011223344445677778888899999998877654331111 11112234778
Q ss_pred EEEEcCChhHHhh
Q 045686 289 IVFTTRSEEVCGE 301 (885)
Q Consensus 289 IivTTR~~~v~~~ 301 (885)
||++|++.+.+..
T Consensus 189 ii~~tH~~~~~~~ 201 (218)
T cd03266 189 ILFSTHIMQEVER 201 (218)
T ss_pred EEEEeCCHHHHHH
Confidence 9999999865543
No 213
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=97.44 E-value=0.0006 Score=70.34 Aligned_cols=132 Identities=14% Similarity=0.147 Sum_probs=75.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCc--c---EEEEEEEcCcc------cHH-----------HHHHHHHHH
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDF--D---LVIWVKVSRDA------NLE-----------KIQESILRR 228 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f--~---~~~wv~v~~~~------~~~-----------~~~~~i~~~ 228 (885)
.++.+++|+|+.|+|||||++.++....+..+.. + .+.++.-.... ++. .-...+++.
T Consensus 28 ~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 107 (251)
T PRK09544 28 KPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKR 107 (251)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccccChhHHHHHhccccccHHHHHHHHHH
Confidence 5788999999999999999999998764322211 1 12222211000 111 112344555
Q ss_pred cCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCC-CCCEEEEEcCChhHHhhh
Q 045686 229 FEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQ-TGSKIVFTTRSEEVCGEM 302 (885)
Q Consensus 229 l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~-~gs~IivTTR~~~v~~~~ 302 (885)
+++.... ..-+..+...-.+.+.+..++-++++|+..+..|........ .+..... .|..||++|++.+.+...
T Consensus 108 ~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~ 187 (251)
T PRK09544 108 VQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAK 187 (251)
T ss_pred cCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHh
Confidence 5553210 011223444445777788889999999999887765432111 1111122 277899999998765443
No 214
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.44 E-value=0.0016 Score=65.08 Aligned_cols=137 Identities=12% Similarity=0.091 Sum_probs=77.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--ccE-EEEEEEcC---------------cccHHHHHHHHHHHcCCC
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FDL-VIWVKVSR---------------DANLEKIQESILRRFEIP 232 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~~-~~wv~v~~---------------~~~~~~~~~~i~~~l~~~ 232 (885)
.++.+++|+|+.|.|||||++.++....+..+. |+. +.++.-.. .+.. ....+..+.++..
T Consensus 29 ~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~~q~~~l~~~t~~enl~~~~~~~~-~~~~~~~~~~~l~ 107 (204)
T cd03250 29 PKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEPWIQNGTIRENILFGKPFDE-ERYEKVIKACALE 107 (204)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEEecCchhccCcHHHHhccCCCcCH-HHHHHHHHHcCcH
Confidence 578899999999999999999999876543332 222 23322110 0011 1111222222210
Q ss_pred c---------------cccCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc--cccccCCCCCEEEEEcCC
Q 045686 233 D---------------QMWIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD--LLDDSSQTGSKIVFTTRS 295 (885)
Q Consensus 233 ~---------------~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~--~l~~~~~~gs~IivTTR~ 295 (885)
. ....-+..+...-.+.+.+..++-++++|+.....|........ .+......|..||++|++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~ 187 (204)
T cd03250 108 PDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQ 187 (204)
T ss_pred HHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCC
Confidence 0 00112233444556778888999999999998877665432111 111122347899999999
Q ss_pred hhHHhhhcccceeec
Q 045686 296 EEVCGEMGARRRFRV 310 (885)
Q Consensus 296 ~~v~~~~~~~~~~~l 310 (885)
.+.... ..+.+.+
T Consensus 188 ~~~~~~--~d~i~~l 200 (204)
T cd03250 188 LQLLPH--ADQIVVL 200 (204)
T ss_pred HHHHhh--CCEEEEE
Confidence 876654 3444443
No 215
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=97.43 E-value=0.00089 Score=69.36 Aligned_cols=130 Identities=22% Similarity=0.274 Sum_probs=75.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--cc---------EEEEEEEcCcc------cHH--------------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FD---------LVIWVKVSRDA------NLE-------------- 219 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~---------~~~wv~v~~~~------~~~-------------- 219 (885)
.++.+++|+|+.|+|||||++.++....+..+. |+ .+.++. +.. ++.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~--q~~~~~~~~tv~e~l~~~~~~~~~~~ 102 (255)
T PRK11248 25 ESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVF--QNEGLLPWRNVQDNVAFGLQLAGVEK 102 (255)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEe--CCCccCCCCcHHHHHHhHHHHcCCCH
Confidence 567899999999999999999999875432221 11 012221 111 111
Q ss_pred ----HHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-ccccc-CCCCCEE
Q 045686 220 ----KIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDS-SQTGSKI 289 (885)
Q Consensus 220 ----~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~-~~~gs~I 289 (885)
.-..++++.+++.... ..-+..+...-.+.+.+..++-+++||+..+..|........ .+... ...|..|
T Consensus 103 ~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tv 182 (255)
T PRK11248 103 MQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQV 182 (255)
T ss_pred HHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 1123455555553210 011223344445677788889999999998877654432111 11111 2247889
Q ss_pred EEEcCChhHHhhh
Q 045686 290 VFTTRSEEVCGEM 302 (885)
Q Consensus 290 ivTTR~~~v~~~~ 302 (885)
|++|++.+.+..+
T Consensus 183 iivsH~~~~~~~~ 195 (255)
T PRK11248 183 LLITHDIEEAVFM 195 (255)
T ss_pred EEEeCCHHHHHHh
Confidence 9999998765543
No 216
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.42 E-value=1.4e-05 Score=78.52 Aligned_cols=101 Identities=29% Similarity=0.367 Sum_probs=78.4
Q ss_pred CCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCchhhhcccccceeeccCCcccccChh--hhccccc
Q 045686 535 SCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPEEIGRLKNLHHLNLSNTSIGCLPTA--IKRLIKL 612 (885)
Q Consensus 535 ~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~Ls~~~i~~lp~~--i~~L~~L 612 (885)
.+.+.+.|++++|.+.. |. +...|+.|+||.||-| .|+.|.. +..|++|+.|.|+.|.|..+-+- +.+|++|
T Consensus 17 dl~~vkKLNcwg~~L~D--Is--ic~kMp~lEVLsLSvN-kIssL~p-l~rCtrLkElYLRkN~I~sldEL~YLknlpsL 90 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDD--IS--ICEKMPLLEVLSLSVN-KISSLAP-LQRCTRLKELYLRKNCIESLDELEYLKNLPSL 90 (388)
T ss_pred HHHHhhhhcccCCCccH--HH--HHHhcccceeEEeecc-ccccchh-HHHHHHHHHHHHHhcccccHHHHHHHhcCchh
Confidence 35577888999998877 43 3788999999999999 8888754 78899999999999988777644 6788999
Q ss_pred cEeecCCcccccccCC----cccccCcccceec
Q 045686 613 KVLLLDGIQCHLSIPE----GVISSLSSLQVFS 641 (885)
Q Consensus 613 ~~L~l~~~~~l~~lp~----~~i~~L~~L~~L~ 641 (885)
+.|.|..|+.-..-+. .++.-|++|+.|+
T Consensus 91 r~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 91 RTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 9999988875554443 2456677777765
No 217
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.42 E-value=0.00093 Score=76.88 Aligned_cols=47 Identities=21% Similarity=0.289 Sum_probs=40.1
Q ss_pred CCCccchhHHHHHHHHHhhc-----CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 045686 151 IGKTVGLDSIISEVWRCIED-----HNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 151 ~~~~vgr~~~~~~l~~~L~~-----~~~~vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
.++++|.++.++++..++.. ...+++.|+|++|+||||+++.++...
T Consensus 83 ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 83 QHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred HHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999854 345679999999999999999998865
No 218
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=97.42 E-value=0.00095 Score=69.06 Aligned_cols=131 Identities=16% Similarity=0.141 Sum_probs=76.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--cc---------EEEEEEEcCc----ccH------------HHHHH
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FD---------LVIWVKVSRD----ANL------------EKIQE 223 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~---------~~~wv~v~~~----~~~------------~~~~~ 223 (885)
.++.+++|+|+.|+|||||++.++....+..+. |+ .+.|+.-... .++ .....
T Consensus 36 ~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~ 115 (257)
T PRK11247 36 PAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAAL 115 (257)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCccCCCCCcHHHHHHhcccchHHHHHH
Confidence 567899999999999999999999875432221 11 1223221100 011 11234
Q ss_pred HHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-ccccc-CCCCCEEEEEcCChh
Q 045686 224 SILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDS-SQTGSKIVFTTRSEE 297 (885)
Q Consensus 224 ~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~-~~~gs~IivTTR~~~ 297 (885)
++++.+++.... ..-+..+...-.+.+.+..++-+++||+..+..|........ .+... ...|..||++|++.+
T Consensus 116 ~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~ 195 (257)
T PRK11247 116 QALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS 195 (257)
T ss_pred HHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 456666664311 011223444445777788889999999998877754432111 11111 234678999999987
Q ss_pred HHhh
Q 045686 298 VCGE 301 (885)
Q Consensus 298 v~~~ 301 (885)
....
T Consensus 196 ~~~~ 199 (257)
T PRK11247 196 EAVA 199 (257)
T ss_pred HHHH
Confidence 6544
No 219
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.42 E-value=0.00058 Score=68.81 Aligned_cols=129 Identities=19% Similarity=0.216 Sum_probs=74.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--cc------------EEEEEEEcCcc------cH------------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FD------------LVIWVKVSRDA------NL------------ 218 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~------------~~~wv~v~~~~------~~------------ 218 (885)
.++.+++|+|+.|+|||||++.++....+..+. |+ .+.++ .+.. ++
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v--~q~~~~~~~~tv~~~l~~~~~~~~ 101 (213)
T cd03259 24 EPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMV--FQDYALFPHLTVAENIAFGLKLRG 101 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEE--cCchhhccCCcHHHHHHhHHHHcC
Confidence 567899999999999999999998865432121 11 12222 2211 11
Q ss_pred ------HHHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccC-CCC
Q 045686 219 ------EKIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSS-QTG 286 (885)
Q Consensus 219 ------~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~-~~g 286 (885)
.....++++.+++.... ..-+..+...-.+.+.+..++-+++||+.....|........ .+.... ..|
T Consensus 102 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~ 181 (213)
T cd03259 102 VPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELG 181 (213)
T ss_pred CCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcC
Confidence 01123455566654210 011223444445777888889999999998887755432111 111111 237
Q ss_pred CEEEEEcCChhHHhh
Q 045686 287 SKIVFTTRSEEVCGE 301 (885)
Q Consensus 287 s~IivTTR~~~v~~~ 301 (885)
..||++|++.+....
T Consensus 182 ~tii~~sH~~~~~~~ 196 (213)
T cd03259 182 ITTIYVTHDQEEALA 196 (213)
T ss_pred CEEEEEecCHHHHHH
Confidence 889999999765443
No 220
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.42 E-value=0.0015 Score=77.18 Aligned_cols=156 Identities=15% Similarity=0.187 Sum_probs=89.0
Q ss_pred CCccchhHHHHHHHHHhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC---ccEEEEEEEcCcccHHHHHHHHHHH
Q 045686 152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD---FDLVIWVKVSRDANLEKIQESILRR 228 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~---f~~~~wv~v~~~~~~~~~~~~i~~~ 228 (885)
.+++||+++++++++.|......-+.++|++|+|||++|+.++......... .++.+|.. +...+ +.
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~l----la- 255 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSL----LA- 255 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHH----hc-
Confidence 4689999999999999977555566789999999999999998765321111 23344421 11111 10
Q ss_pred cCCCccccCCCChhHHHHHHHHHh-cCCCeEEEEecCCCcc----------ccccccccccccccCCCCCEEEEEcCChh
Q 045686 229 FEIPDQMWIGKDEDGRANEILSNL-RGKKFVLLLDDVWERL----------DLSKVGVSDLLDDSSQTGSKIVFTTRSEE 297 (885)
Q Consensus 229 l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVLDdv~~~~----------~~~~~~~~~~l~~~~~~gs~IivTTR~~~ 297 (885)
|.. ...+.+.....+...+ +.++.+|++|++.... +...+..+. .....-+||-+|...+
T Consensus 256 -G~~----~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~----L~~g~i~vIgATt~~E 326 (758)
T PRK11034 256 -GTK----YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPL----LSSGKIRVIGSTTYQE 326 (758)
T ss_pred -ccc----hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHH----HhCCCeEEEecCChHH
Confidence 111 1112333444443333 3467899999996421 111111111 1222344555554443
Q ss_pred HHhh-------hcccceeeccCCChHHHHHHHHHHh
Q 045686 298 VCGE-------MGARRRFRVECLSPEAALDLFRYKV 326 (885)
Q Consensus 298 v~~~-------~~~~~~~~l~~L~~~~~~~Lf~~~~ 326 (885)
.... ..--..+.++.++.+++.+++....
T Consensus 327 ~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 327 FSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 2111 1112478999999999999998654
No 221
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=97.42 E-value=0.00087 Score=72.23 Aligned_cols=131 Identities=20% Similarity=0.322 Sum_probs=72.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCC--Cc---cEEEE-----------EE----------------EcCcccH
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGH--DF---DLVIW-----------VK----------------VSRDANL 218 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~--~f---~~~~w-----------v~----------------v~~~~~~ 218 (885)
..+.+++|+|++|+||||||+.+..-..+..+ +. +..-| .. ..++.+.
T Consensus 360 ~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~ 439 (580)
T COG4618 360 QAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADP 439 (580)
T ss_pred cCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCH
Confidence 56789999999999999999999876543211 01 01111 10 1112233
Q ss_pred HHHH--------HHHHHHcCCCccccC------CCChhHHHHHHHHHhcCCCeEEEEecCCCccccccc-cccccccccC
Q 045686 219 EKIQ--------ESILRRFEIPDQMWI------GKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKV-GVSDLLDDSS 283 (885)
Q Consensus 219 ~~~~--------~~i~~~l~~~~~~~~------~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~-~~~~~l~~~~ 283 (885)
+++. ++++-.+--..+... -+..+...-.+.+.+-+.++|+|||+.....|-+-- ...-.+....
T Consensus 440 ~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k 519 (580)
T COG4618 440 EKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAK 519 (580)
T ss_pred HHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHH
Confidence 3332 233333321111101 112333344588999999999999999876553211 0000111134
Q ss_pred CCCCEEEEEcCChhHHhh
Q 045686 284 QTGSKIVFTTRSEEVCGE 301 (885)
Q Consensus 284 ~~gs~IivTTR~~~v~~~ 301 (885)
.+|+.+||.|+...+...
T Consensus 520 ~rG~~vvviaHRPs~L~~ 537 (580)
T COG4618 520 ARGGTVVVIAHRPSALAS 537 (580)
T ss_pred HcCCEEEEEecCHHHHhh
Confidence 568888888888877654
No 222
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=97.41 E-value=0.00088 Score=71.30 Aligned_cols=132 Identities=21% Similarity=0.169 Sum_probs=75.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--c-------------cEEEEEEEcC----cccHHH-----------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--F-------------DLVIWVKVSR----DANLEK----------- 220 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f-------------~~~~wv~v~~----~~~~~~----------- 220 (885)
.++.+++|+|+.|+|||||.+.++....+..+. + ..+.++.-.. ..++.+
T Consensus 31 ~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~ 110 (306)
T PRK13537 31 QRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGL 110 (306)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcCC
Confidence 567899999999999999999999876432221 0 1122222110 111111
Q ss_pred -------HHHHHHHHcCCCccc---c-CCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCCCCCE
Q 045686 221 -------IQESILRRFEIPDQM---W-IGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQTGSK 288 (885)
Q Consensus 221 -------~~~~i~~~l~~~~~~---~-~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~gs~ 288 (885)
...++++.+++.... . .-+..+...-.+...+..++-+++||+..+..|........ .+......|..
T Consensus 111 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~t 190 (306)
T PRK13537 111 SAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKT 190 (306)
T ss_pred CHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCE
Confidence 122344444443210 0 11122333445777888899999999999887765432111 11112345889
Q ss_pred EEEEcCChhHHhhh
Q 045686 289 IVFTTRSEEVCGEM 302 (885)
Q Consensus 289 IivTTR~~~v~~~~ 302 (885)
||+||++.+-+..+
T Consensus 191 ill~sH~l~e~~~~ 204 (306)
T PRK13537 191 ILLTTHFMEEAERL 204 (306)
T ss_pred EEEECCCHHHHHHh
Confidence 99999998765443
No 223
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=97.41 E-value=0.00081 Score=67.48 Aligned_cols=129 Identities=17% Similarity=0.164 Sum_probs=74.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--c------------cEEEEEEEcCcc------cHH-----------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--F------------DLVIWVKVSRDA------NLE----------- 219 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f------------~~~~wv~v~~~~------~~~----------- 219 (885)
.++.+++|+|+.|+|||||++.++....+..+. + ..+.++ .+.. ++.
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~--~q~~~~~~~~tv~e~l~~~~~~~~ 101 (208)
T cd03268 24 KKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGAL--IEAPGFYPNLTARENLRLLARLLG 101 (208)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEe--cCCCccCccCcHHHHHHHHHHhcC
Confidence 567899999999999999999998765332111 0 112222 1111 111
Q ss_pred ---HHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCCCCCEEEE
Q 045686 220 ---KIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQTGSKIVF 291 (885)
Q Consensus 220 ---~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~gs~Iiv 291 (885)
....++++.+++.... ..-+..+...-.+...+..++-++++|+.....|........ .+......|..||+
T Consensus 102 ~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~ 181 (208)
T cd03268 102 IRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLI 181 (208)
T ss_pred CcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 1123344555543210 011223333445677778888899999998887765432211 11112235788999
Q ss_pred EcCChhHHhh
Q 045686 292 TTRSEEVCGE 301 (885)
Q Consensus 292 TTR~~~v~~~ 301 (885)
+|++.+.+..
T Consensus 182 ~tH~~~~~~~ 191 (208)
T cd03268 182 SSHLLSEIQK 191 (208)
T ss_pred EcCCHHHHHH
Confidence 9999876554
No 224
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.40 E-value=0.00097 Score=67.55 Aligned_cols=131 Identities=20% Similarity=0.147 Sum_probs=75.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--c---------cEEEEEEEc----CcccHH----------------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--F---------DLVIWVKVS----RDANLE---------------- 219 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f---------~~~~wv~v~----~~~~~~---------------- 219 (885)
.++.+++|+|+.|+|||||++.++....+..+. + ..+.++.-. ...++.
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~ 107 (220)
T cd03293 28 EEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAE 107 (220)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEecccccccCCCHHHHHHHHHHHcCCCHHH
Confidence 467899999999999999999999875432221 1 112222210 001111
Q ss_pred --HHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCcccccccccccc-cccc-CCCCCEEEE
Q 045686 220 --KIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSDL-LDDS-SQTGSKIVF 291 (885)
Q Consensus 220 --~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~~-l~~~-~~~gs~Iiv 291 (885)
+...++++.+++.... ..-+..+...-.+.+.+..++-+++||+.....|......... +... ...|..||+
T Consensus 108 ~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii 187 (220)
T cd03293 108 ARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLL 187 (220)
T ss_pred HHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 1123445555553210 0122334445567788888899999999988877554322111 1111 234678999
Q ss_pred EcCChhHHhh
Q 045686 292 TTRSEEVCGE 301 (885)
Q Consensus 292 TTR~~~v~~~ 301 (885)
+|++.+....
T Consensus 188 ~sH~~~~~~~ 197 (220)
T cd03293 188 VTHDIDEAVF 197 (220)
T ss_pred EecCHHHHHH
Confidence 9999875443
No 225
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=97.40 E-value=0.0011 Score=67.42 Aligned_cols=129 Identities=19% Similarity=0.207 Sum_probs=74.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--c----------cEEEEEEEcCc------ccHH-------------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--F----------DLVIWVKVSRD------ANLE------------- 219 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f----------~~~~wv~v~~~------~~~~------------- 219 (885)
.++.+++|+|+.|+|||||++.+.....+..+. + ..+.+ +.+. .++.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~--~~q~~~~~~~~t~~~~~~~~~~~~~~~ 101 (223)
T TIGR03740 24 PKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGS--LIESPPLYENLTARENLKVHTTLLGLP 101 (223)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEE--EcCCCCccccCCHHHHHHHHHHHcCCC
Confidence 567899999999999999999999865432221 1 11111 1111 1111
Q ss_pred -HHHHHHHHHcCCCccc---c-CCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCCCCCEEEEEc
Q 045686 220 -KIQESILRRFEIPDQM---W-IGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQTGSKIVFTT 293 (885)
Q Consensus 220 -~~~~~i~~~l~~~~~~---~-~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~gs~IivTT 293 (885)
.-..++++.+++.... . .-+..+...-.+.+.+...+-++++|+..+..|........ .+......|..||+||
T Consensus 102 ~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~s 181 (223)
T TIGR03740 102 DSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSS 181 (223)
T ss_pred HHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEc
Confidence 1223445555554210 0 11223334445677788889999999998877655331111 1111223477899999
Q ss_pred CChhHHhh
Q 045686 294 RSEEVCGE 301 (885)
Q Consensus 294 R~~~v~~~ 301 (885)
++.+....
T Consensus 182 H~~~~~~~ 189 (223)
T TIGR03740 182 HILSEVQQ 189 (223)
T ss_pred CCHHHHHH
Confidence 99876543
No 226
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.39 E-value=0.0011 Score=80.59 Aligned_cols=154 Identities=14% Similarity=0.177 Sum_probs=88.4
Q ss_pred CCccchhHHHHHHHHHhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC----ccEEEEEEEcCcccHHHHHHHHHH
Q 045686 152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD----FDLVIWVKVSRDANLEKIQESILR 227 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~----f~~~~wv~v~~~~~~~~~~~~i~~ 227 (885)
.+++||+.++++++..|.......+.++|++|+|||++|+.++.+.... .. ....+|.. ++..+..
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~-~~p~~l~~~~~~~l-----~~~~l~a---- 242 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNG-DVPESLKNKRLLAL-----DMGALIA---- 242 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcc-CCchhhcCCeEEEe-----eHHHHhh----
Confidence 4689999999999999977666677789999999999999998876321 10 11222221 1111110
Q ss_pred HcCCCccccCCCChhHHHHHHHHHhc--CCCeEEEEecCCCccc---------cccccccccccccCCCC-CEEEEEcCC
Q 045686 228 RFEIPDQMWIGKDEDGRANEILSNLR--GKKFVLLLDDVWERLD---------LSKVGVSDLLDDSSQTG-SKIVFTTRS 295 (885)
Q Consensus 228 ~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVLDdv~~~~~---------~~~~~~~~~l~~~~~~g-s~IivTTR~ 295 (885)
+.. .....+.....+...+. +++.+|++|++..... ...+..+ ...+| -++|-+|..
T Consensus 243 --~~~----~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~-----~l~~g~i~~IgaTt~ 311 (852)
T TIGR03346 243 --GAK----YRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKP-----ALARGELHCIGATTL 311 (852)
T ss_pred --cch----hhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhch-----hhhcCceEEEEeCcH
Confidence 100 11123333333333332 4689999999974321 1111111 11223 455555554
Q ss_pred hhHHhhh-------cccceeeccCCChHHHHHHHHHHh
Q 045686 296 EEVCGEM-------GARRRFRVECLSPEAALDLFRYKV 326 (885)
Q Consensus 296 ~~v~~~~-------~~~~~~~l~~L~~~~~~~Lf~~~~ 326 (885)
.+.-..+ .-...+.+...+.++...+++...
T Consensus 312 ~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 312 DEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 4431111 122457889999999999987654
No 227
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.39 E-value=0.0016 Score=73.03 Aligned_cols=161 Identities=21% Similarity=0.316 Sum_probs=86.9
Q ss_pred CCccchhHHHHHHHHHhhc-------------CCCeEEEEEcCCCCcHHHHHHHHHhhhccC--CCCccEEEEEEEcCcc
Q 045686 152 GKTVGLDSIISEVWRCIED-------------HNEKVIGLYGMGGVGKTTLLKKLNNKFRDT--GHDFDLVIWVKVSRDA 216 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~-------------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~--~~~f~~~~wv~v~~~~ 216 (885)
.++.|.+..++++.+.+.- ...+-+.++|++|+|||++|+.+++..... ........++.+...
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~- 260 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGP- 260 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccch-
Confidence 3466899999988887621 234568899999999999999999987311 000122334443321
Q ss_pred cHHHHHHHHHHHcCCCccccCCCChhHHHHHH----HHH-hcCCCeEEEEecCCCccc---------ccc-ccccc--cc
Q 045686 217 NLEKIQESILRRFEIPDQMWIGKDEDGRANEI----LSN-LRGKKFVLLLDDVWERLD---------LSK-VGVSD--LL 279 (885)
Q Consensus 217 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l----~~~-l~~k~~LlVLDdv~~~~~---------~~~-~~~~~--~l 279 (885)
.+ +... .+. .+.....+ +.. -.+++.+|++|+++.... ... +...+ .+
T Consensus 261 ---eL----l~ky-------vGe-te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~L 325 (512)
T TIGR03689 261 ---EL----LNKY-------VGE-TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSEL 325 (512)
T ss_pred ---hh----cccc-------cch-HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHh
Confidence 11 1000 011 11111112 211 134789999999975311 100 00000 00
Q ss_pred cc-cCCCCCEEEEEcCChhHHh-h----hcccceeeccCCChHHHHHHHHHHhcC
Q 045686 280 DD-SSQTGSKIVFTTRSEEVCG-E----MGARRRFRVECLSPEAALDLFRYKVGE 328 (885)
Q Consensus 280 ~~-~~~~gs~IivTTR~~~v~~-~----~~~~~~~~l~~L~~~~~~~Lf~~~~~~ 328 (885)
.. ....+..||.||...+... . ..-...|+++..+.++..++|+++...
T Consensus 326 Dgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 326 DGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred cccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 00 1112344555665443321 1 123456899999999999999988753
No 228
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.39 E-value=0.00076 Score=70.72 Aligned_cols=129 Identities=22% Similarity=0.222 Sum_probs=75.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--ccE--------------EEEEEEcCcc-------cH---------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FDL--------------VIWVKVSRDA-------NL--------- 218 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~~--------------~~wv~v~~~~-------~~--------- 218 (885)
.++.+++|+|+.|+|||||++.+.....+..+. ++. +.++ .+.+ ++
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v--~q~~~~~~~~~tv~e~l~~~~~ 106 (274)
T PRK13647 29 PEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLV--FQDPDDQVFSSTVWDDVAFGPV 106 (274)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEE--ecChhhhhccCcHHHHHHhhHH
Confidence 578999999999999999999999765432221 111 1121 1111 00
Q ss_pred ---------HHHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCC
Q 045686 219 ---------EKIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQ 284 (885)
Q Consensus 219 ---------~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~ 284 (885)
.....++++.+++.... ..-+..+...-.+.+.+..++-+++||++....|........ .+.....
T Consensus 107 ~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 186 (274)
T PRK13647 107 NMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHN 186 (274)
T ss_pred HcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHH
Confidence 11123444555543210 011223444456778888899999999998877654332111 1111223
Q ss_pred CCCEEEEEcCChhHHhh
Q 045686 285 TGSKIVFTTRSEEVCGE 301 (885)
Q Consensus 285 ~gs~IivTTR~~~v~~~ 301 (885)
.|..||++|++.+.+..
T Consensus 187 ~g~tili~tH~~~~~~~ 203 (274)
T PRK13647 187 QGKTVIVATHDVDLAAE 203 (274)
T ss_pred CCCEEEEEeCCHHHHHH
Confidence 47899999999876543
No 229
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.38 E-value=7.5e-05 Score=70.36 Aligned_cols=104 Identities=23% Similarity=0.207 Sum_probs=72.8
Q ss_pred hhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCchhhhc-ccccceeeccCCcccccChh--hhccccccE
Q 045686 538 QVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPEEIGR-LKNLHHLNLSNTSIGCLPTA--IKRLIKLKV 614 (885)
Q Consensus 538 ~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~-L~~L~~L~Ls~~~i~~lp~~--i~~L~~L~~ 614 (885)
....++|++|.+.. ++. |..++.|..|.|++| .|+.+-..+.. +++|..|.|.+|+|.++..- +..|++|++
T Consensus 43 ~~d~iDLtdNdl~~--l~~--lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK--LDN--LPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEY 117 (233)
T ss_pred ccceecccccchhh--ccc--CCCccccceEEecCC-cceeeccchhhhccccceEEecCcchhhhhhcchhccCCccce
Confidence 44566777777665 444 777888888888888 67666555543 56688888888877665432 567788888
Q ss_pred eecCCcccccccC---CcccccCcccceeccccccc
Q 045686 615 LLLDGIQCHLSIP---EGVISSLSSLQVFSCFSTEL 647 (885)
Q Consensus 615 L~l~~~~~l~~lp---~~~i~~L~~L~~L~l~~~~~ 647 (885)
|.+-+|+ ...-+ ..++.++++|+.||+.+...
T Consensus 118 Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 118 LTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred eeecCCc-hhcccCceeEEEEecCcceEeehhhhhH
Confidence 8888886 33322 34578899999999887654
No 230
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.38 E-value=0.00039 Score=66.21 Aligned_cols=121 Identities=21% Similarity=0.237 Sum_probs=71.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcc--cHHHHHHHHHHHcCCCccccCCCChhHHHHHH
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDA--NLEKIQESILRRFEIPDQMWIGKDEDGRANEI 248 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l 248 (885)
.+..+++|+|..|.|||||++.++....+ ..+.+++...... .... ....++... .-+..+...-.+
T Consensus 23 ~~g~~~~i~G~nGsGKStll~~l~g~~~~----~~G~i~~~~~~~~~~~~~~----~~~~i~~~~---qlS~G~~~r~~l 91 (157)
T cd00267 23 KAGEIVALVGPNGSGKSTLLRAIAGLLKP----TSGEILIDGKDIAKLPLEE----LRRRIGYVP---QLSGGQRQRVAL 91 (157)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC----CccEEEECCEEcccCCHHH----HHhceEEEe---eCCHHHHHHHHH
Confidence 46689999999999999999999987632 2334443321111 1111 112222111 122344455557
Q ss_pred HHHhcCCCeEEEEecCCCccccccccccc-cccccCCCCCEEEEEcCChhHHhhh
Q 045686 249 LSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQTGSKIVFTTRSEEVCGEM 302 (885)
Q Consensus 249 ~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~gs~IivTTR~~~v~~~~ 302 (885)
...+...+-++++|++....|........ .+......+..++++|++.+.....
T Consensus 92 ~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~ 146 (157)
T cd00267 92 ARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELA 146 (157)
T ss_pred HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 77788889999999998876654331111 1111122367899999998766543
No 231
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.38 E-value=0.00076 Score=69.06 Aligned_cols=131 Identities=22% Similarity=0.210 Sum_probs=75.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--c-----------------cEEEEEEEcC----cccHH--------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--F-----------------DLVIWVKVSR----DANLE-------- 219 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f-----------------~~~~wv~v~~----~~~~~-------- 219 (885)
..+.+++|+|+.|+|||||++.++....+..+. | ..+.++.-.. ..++.
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~ 108 (233)
T cd03258 29 PKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLE 108 (233)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHH
Confidence 567899999999999999999998876432221 1 1122221110 00111
Q ss_pred ----------HHHHHHHHHcCCCccc---c-CCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccC-
Q 045686 220 ----------KIQESILRRFEIPDQM---W-IGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSS- 283 (885)
Q Consensus 220 ----------~~~~~i~~~l~~~~~~---~-~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~- 283 (885)
....++++.+++.... . .-+..+...-.+.+.+..++-+++||+.....|........ .+....
T Consensus 109 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~ 188 (233)
T cd03258 109 IAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINR 188 (233)
T ss_pred HcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHH
Confidence 1123445555553210 0 11223444445677778888899999998887755432211 111122
Q ss_pred CCCCEEEEEcCChhHHhh
Q 045686 284 QTGSKIVFTTRSEEVCGE 301 (885)
Q Consensus 284 ~~gs~IivTTR~~~v~~~ 301 (885)
..|..||++|++.+.+..
T Consensus 189 ~~~~tvii~sH~~~~~~~ 206 (233)
T cd03258 189 ELGLTIVLITHEMEVVKR 206 (233)
T ss_pred HcCCEEEEEeCCHHHHHH
Confidence 237899999999876544
No 232
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.38 E-value=0.00087 Score=67.16 Aligned_cols=130 Identities=15% Similarity=0.187 Sum_probs=74.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--cc------------------EEEEEEEcCc----ccH--------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FD------------------LVIWVKVSRD----ANL-------- 218 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~------------------~~~wv~v~~~----~~~-------- 218 (885)
.++.+++|+|+.|+|||||++.++....+..+. ++ .+.++.-... .++
T Consensus 22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~ 101 (206)
T TIGR03608 22 EKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGL 101 (206)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhccCCcHHHHHHHHH
Confidence 467899999999999999999999865432121 10 1222221100 011
Q ss_pred ----------HHHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccC
Q 045686 219 ----------EKIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSS 283 (885)
Q Consensus 219 ----------~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~ 283 (885)
.+...++++.+++.... ..-+..+...-.+.+.+..++-+++||+..+..|........ .+....
T Consensus 102 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 181 (206)
T TIGR03608 102 KYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELN 181 (206)
T ss_pred HhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHH
Confidence 11223455666653210 011223344445778888899999999998876654332111 111122
Q ss_pred CCCCEEEEEcCChhHHh
Q 045686 284 QTGSKIVFTTRSEEVCG 300 (885)
Q Consensus 284 ~~gs~IivTTR~~~v~~ 300 (885)
..|..||++|++.+...
T Consensus 182 ~~~~tii~~sh~~~~~~ 198 (206)
T TIGR03608 182 DEGKTIIIVTHDPEVAK 198 (206)
T ss_pred hcCCEEEEEeCCHHHHh
Confidence 34788999999987653
No 233
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=97.37 E-value=0.0013 Score=69.05 Aligned_cols=130 Identities=20% Similarity=0.246 Sum_probs=74.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--cc-----------EEEEEEEcCcc--------c------------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FD-----------LVIWVKVSRDA--------N------------ 217 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~-----------~~~wv~v~~~~--------~------------ 217 (885)
..+.+++|+|++|+|||||++.++....+..+. |+ .+.++ .+.+ .
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v--~q~~~~~~~~~~~~~~~i~~~~~~~ 108 (272)
T PRK15056 31 PGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYV--PQSEEVDWSFPVLVEDVVMMGRYGH 108 (272)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEe--ccccccccCCCcchhhheecccccc
Confidence 567899999999999999999998775432121 11 12222 1110 0
Q ss_pred ----------HHHHHHHHHHHcCCCccc---c-CCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-ccccc
Q 045686 218 ----------LEKIQESILRRFEIPDQM---W-IGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDS 282 (885)
Q Consensus 218 ----------~~~~~~~i~~~l~~~~~~---~-~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~ 282 (885)
......++++.+++.... . .-+..+...-.+.+.+..++-++++|+.....|........ .+...
T Consensus 109 ~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~ 188 (272)
T PRK15056 109 MGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLREL 188 (272)
T ss_pred cccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 011233455556653210 0 11223444445677777888999999998877654332111 11112
Q ss_pred CCCCCEEEEEcCChhHHhhh
Q 045686 283 SQTGSKIVFTTRSEEVCGEM 302 (885)
Q Consensus 283 ~~~gs~IivTTR~~~v~~~~ 302 (885)
...|..||++|++.+....+
T Consensus 189 ~~~g~tviivsH~~~~~~~~ 208 (272)
T PRK15056 189 RDEGKTMLVSTHNLGSVTEF 208 (272)
T ss_pred HhCCCEEEEEeCCHHHHHHh
Confidence 23477899999997655443
No 234
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.37 E-value=0.00081 Score=67.84 Aligned_cols=131 Identities=20% Similarity=0.179 Sum_probs=74.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--cc-----------------EEEEEEEcC----cccHH--------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FD-----------------LVIWVKVSR----DANLE-------- 219 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~-----------------~~~wv~v~~----~~~~~-------- 219 (885)
.++.+++|+|++|+|||||++.++....+..+. |+ .+.++.-.. ..++.
T Consensus 25 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~ 104 (214)
T cd03292 25 SAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALE 104 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHH
Confidence 567899999999999999999999875432121 11 122221100 00111
Q ss_pred ----------HHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCC
Q 045686 220 ----------KIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQ 284 (885)
Q Consensus 220 ----------~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~ 284 (885)
+...++++.+++.... ..-+..+...-.+.+.+..++-++++|+.....|........ .+.....
T Consensus 105 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~ 184 (214)
T cd03292 105 VTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINK 184 (214)
T ss_pred HcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH
Confidence 1123445555553210 011223344445677778888999999998877654332211 1111223
Q ss_pred CCCEEEEEcCChhHHhh
Q 045686 285 TGSKIVFTTRSEEVCGE 301 (885)
Q Consensus 285 ~gs~IivTTR~~~v~~~ 301 (885)
.|..||++|++.+....
T Consensus 185 ~~~tiiivtH~~~~~~~ 201 (214)
T cd03292 185 AGTTVVVATHAKELVDT 201 (214)
T ss_pred cCCEEEEEeCCHHHHHH
Confidence 47789999999766554
No 235
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.37 E-value=0.00093 Score=68.49 Aligned_cols=131 Identities=18% Similarity=0.156 Sum_probs=74.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--c-----------------cEEEEEEEcC----cccHH--------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--F-----------------DLVIWVKVSR----DANLE-------- 219 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f-----------------~~~~wv~v~~----~~~~~-------- 219 (885)
.++.+++|+|+.|+|||||++.++....+..+. | ..+.|+.-.. ..++.
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~ 103 (235)
T cd03261 24 RRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLR 103 (235)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHh
Confidence 567899999999999999999999775432111 1 0122222100 00111
Q ss_pred -----------HHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccC
Q 045686 220 -----------KIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSS 283 (885)
Q Consensus 220 -----------~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~ 283 (885)
....++++.+++.... ..-+..+...-.+.+.+..++-+++||+..+..|........ .+....
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 183 (235)
T cd03261 104 EHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLK 183 (235)
T ss_pred hccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHH
Confidence 1123345555553211 011223444455777888889999999998887754332111 111122
Q ss_pred C-CCCEEEEEcCChhHHhh
Q 045686 284 Q-TGSKIVFTTRSEEVCGE 301 (885)
Q Consensus 284 ~-~gs~IivTTR~~~v~~~ 301 (885)
. .|..||++|++.+.+..
T Consensus 184 ~~~~~tvi~vsH~~~~~~~ 202 (235)
T cd03261 184 KELGLTSIMVTHDLDTAFA 202 (235)
T ss_pred HhcCcEEEEEecCHHHHHH
Confidence 2 37889999999876544
No 236
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.36 E-value=0.0037 Score=74.68 Aligned_cols=46 Identities=22% Similarity=0.346 Sum_probs=39.9
Q ss_pred CCccchhHHHHHHHHHhhc------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 045686 152 GKTVGLDSIISEVWRCIED------HNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~------~~~~vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
.+.+|.++.+++|.+++.. ....++.++|++|+||||+|+.++...
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l 373 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT 373 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 5678999999999988842 356789999999999999999999876
No 237
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=97.36 E-value=0.0012 Score=68.33 Aligned_cols=131 Identities=19% Similarity=0.182 Sum_probs=74.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCc------------------------cEEEEEEEcC----cccHH---
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDF------------------------DLVIWVKVSR----DANLE--- 219 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f------------------------~~~~wv~v~~----~~~~~--- 219 (885)
.++.+++|+|+.|+|||||++.++.......+.+ ..+.++.-.. ..++.
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l 106 (250)
T PRK11264 27 KPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENI 106 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHH
Confidence 5678999999999999999999987653221110 0122221110 01111
Q ss_pred ----------------HHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-c
Q 045686 220 ----------------KIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-L 278 (885)
Q Consensus 220 ----------------~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~ 278 (885)
....++++.+++.... ..-+..+...-.+.+.+..++-+++||+..+..|........ .
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~ 186 (250)
T PRK11264 107 IEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNT 186 (250)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH
Confidence 1123344555553210 011223344445777788888999999998887765432111 1
Q ss_pred ccccCCCCCEEEEEcCChhHHhh
Q 045686 279 LDDSSQTGSKIVFTTRSEEVCGE 301 (885)
Q Consensus 279 l~~~~~~gs~IivTTR~~~v~~~ 301 (885)
+......|..||++|++.+....
T Consensus 187 l~~~~~~~~tvi~~tH~~~~~~~ 209 (250)
T PRK11264 187 IRQLAQEKRTMVIVTHEMSFARD 209 (250)
T ss_pred HHHHHhcCCEEEEEeCCHHHHHH
Confidence 11122347789999999766543
No 238
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.36 E-value=0.00097 Score=67.26 Aligned_cols=131 Identities=19% Similarity=0.182 Sum_probs=74.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--c-----------------cEEEEEEEcC----cccH---------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--F-----------------DLVIWVKVSR----DANL--------- 218 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f-----------------~~~~wv~v~~----~~~~--------- 218 (885)
.++.+++|+|+.|+|||||++.++....+..+. + ..+.++.-.. ..++
T Consensus 26 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~ 105 (214)
T TIGR02673 26 RKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLE 105 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHH
Confidence 567899999999999999999998865332111 0 1122222000 0011
Q ss_pred ---------HHHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCC
Q 045686 219 ---------EKIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQ 284 (885)
Q Consensus 219 ---------~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~ 284 (885)
.....++++.+++.... ..-+..+...-.+.+.+..++-+++||+.....|........ .+.....
T Consensus 106 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~ 185 (214)
T TIGR02673 106 VRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNK 185 (214)
T ss_pred HcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 11223445555553210 011223444455777888889999999998887765432211 1111223
Q ss_pred CCCEEEEEcCChhHHhh
Q 045686 285 TGSKIVFTTRSEEVCGE 301 (885)
Q Consensus 285 ~gs~IivTTR~~~v~~~ 301 (885)
.|..||++|++.+....
T Consensus 186 ~~~tii~~tH~~~~~~~ 202 (214)
T TIGR02673 186 RGTTVIVATHDLSLVDR 202 (214)
T ss_pred cCCEEEEEeCCHHHHHH
Confidence 47789999998765544
No 239
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.36 E-value=0.0011 Score=64.90 Aligned_cols=120 Identities=17% Similarity=0.175 Sum_probs=68.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEE-------------------EcCcc-----c-HHHHHHHH
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVK-------------------VSRDA-----N-LEKIQESI 225 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~-------------------v~~~~-----~-~~~~~~~i 225 (885)
.++.+++|+|+.|+|||||++.++....+..+ .+++. +.+.. . ...+...+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G----~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l 99 (182)
T cd03215 24 RAGEIVGIAGLVGNGQTELAEALFGLRPPASG----EITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENI 99 (182)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc----eEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCcHHHHH
Confidence 56789999999999999999999987643222 22221 11110 0 00111111
Q ss_pred HHHcCCCccccCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCCCCCEEEEEcCChhHHhh
Q 045686 226 LRRFEIPDQMWIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQTGSKIVFTTRSEEVCGE 301 (885)
Q Consensus 226 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~gs~IivTTR~~~v~~~ 301 (885)
.... .-+..+...-.+.+.+..++-++++|+.....|........ .+......|..||++|++.+....
T Consensus 100 ~~~~-------~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~ 169 (182)
T cd03215 100 ALSS-------LLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLG 169 (182)
T ss_pred HHHh-------hcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 0000 01122333445777788899999999998877655332111 111122347889999999765443
No 240
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=97.35 E-value=0.0012 Score=70.37 Aligned_cols=130 Identities=14% Similarity=0.186 Sum_probs=74.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--c-------------cEEEEEEEcC----cccHH------------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--F-------------DLVIWVKVSR----DANLE------------ 219 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f-------------~~~~wv~v~~----~~~~~------------ 219 (885)
.++.+++|+|+.|+|||||.+.+.....+..+. + ..+.++.-.. ..++.
T Consensus 26 ~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~ 105 (301)
T TIGR03522 26 QKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGM 105 (301)
T ss_pred eCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcCC
Confidence 567899999999999999999999875432221 0 1122221110 01111
Q ss_pred ------HHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCCCCCE
Q 045686 220 ------KIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQTGSK 288 (885)
Q Consensus 220 ------~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~gs~ 288 (885)
+...++++.+++.... ..-+..+...-.+.+.+..++-+++||+..+..|........ .+... ..+..
T Consensus 106 ~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~-~~~~t 184 (301)
T TIGR03522 106 KGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNI-GKDKT 184 (301)
T ss_pred CHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHh-cCCCE
Confidence 1223445555554211 011223344445778888899999999999887755331111 11112 23678
Q ss_pred EEEEcCChhHHhh
Q 045686 289 IVFTTRSEEVCGE 301 (885)
Q Consensus 289 IivTTR~~~v~~~ 301 (885)
||+||++.+.+..
T Consensus 185 iii~sH~l~~~~~ 197 (301)
T TIGR03522 185 IILSTHIMQEVEA 197 (301)
T ss_pred EEEEcCCHHHHHH
Confidence 9999999875544
No 241
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.35 E-value=0.0011 Score=66.66 Aligned_cols=128 Identities=19% Similarity=0.200 Sum_probs=72.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--c-------------cEEEEEEEcC----cccHH-------------
Q 045686 172 NEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--F-------------DLVIWVKVSR----DANLE------------- 219 (885)
Q Consensus 172 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f-------------~~~~wv~v~~----~~~~~------------- 219 (885)
+. +++|+|+.|+|||||++.++....+..+. + ..+.++.-.. ..++.
T Consensus 25 ~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~ 103 (211)
T cd03264 25 PG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIP 103 (211)
T ss_pred CC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecCCCcccccCCHHHHHHHHHHHhCCC
Confidence 45 99999999999999999999765432111 0 1122221100 00111
Q ss_pred -----HHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCCCCCEE
Q 045686 220 -----KIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQTGSKI 289 (885)
Q Consensus 220 -----~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~gs~I 289 (885)
....++++.+++.... ..-+..+...-.+.+.+..++-++++|+.....|........ .+..... +..|
T Consensus 104 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~ti 182 (211)
T cd03264 104 SKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIV 182 (211)
T ss_pred HHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEE
Confidence 1123345555543210 011223444455777888899999999998877755332211 1111222 4789
Q ss_pred EEEcCChhHHhh
Q 045686 290 VFTTRSEEVCGE 301 (885)
Q Consensus 290 ivTTR~~~v~~~ 301 (885)
|++|++.+....
T Consensus 183 i~vsH~~~~~~~ 194 (211)
T cd03264 183 ILSTHIVEDVES 194 (211)
T ss_pred EEEcCCHHHHHH
Confidence 999999876544
No 242
>PRK08116 hypothetical protein; Validated
Probab=97.35 E-value=0.00038 Score=72.17 Aligned_cols=106 Identities=25% Similarity=0.361 Sum_probs=58.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHHHcCCCccccCCCChhHHHHHHHHHh
Q 045686 173 EKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILRRFEIPDQMWIGKDEDGRANEILSNL 252 (885)
Q Consensus 173 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 252 (885)
...+.++|.+|+|||.||..+++.... . ...+++++ ...++..+....... ...+. ..+.+.+
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~--~-~~~v~~~~------~~~ll~~i~~~~~~~----~~~~~----~~~~~~l 176 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIE--K-GVPVIFVN------FPQLLNRIKSTYKSS----GKEDE----NEIIRSL 176 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHH--c-CCeEEEEE------HHHHHHHHHHHHhcc----ccccH----HHHHHHh
Confidence 345889999999999999999998742 2 23455654 344555555443221 11111 2233344
Q ss_pred cCCCeEEEEecCCCc--cccccccccccccccCCCCCEEEEEcCCh
Q 045686 253 RGKKFVLLLDDVWER--LDLSKVGVSDLLDDSSQTGSKIVFTTRSE 296 (885)
Q Consensus 253 ~~k~~LlVLDdv~~~--~~~~~~~~~~~l~~~~~~gs~IivTTR~~ 296 (885)
.+-. ||||||+... .+|..-...-.+...-..|..+||||...
T Consensus 177 ~~~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 177 VNAD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred cCCC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 4333 8999999532 33322111101100123456788888654
No 243
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.35 E-value=0.0031 Score=69.50 Aligned_cols=136 Identities=16% Similarity=0.121 Sum_probs=84.0
Q ss_pred hhHHHHHHHHHhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHHHcCCCcccc
Q 045686 157 LDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILRRFEIPDQMW 236 (885)
Q Consensus 157 r~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~ 236 (885)
|..-..++.+.+..... ++.|.|+-++||||+++.+..... .. .+++..-+......-
T Consensus 22 ~~~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~---~~---~iy~~~~d~~~~~~~--------------- 79 (398)
T COG1373 22 RRKLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLL---EE---IIYINFDDLRLDRIE--------------- 79 (398)
T ss_pred HHhhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCC---cc---eEEEEecchhcchhh---------------
Confidence 44555566666554444 999999999999999977766652 22 455543322111111
Q ss_pred CCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccccccccCCCCCEEEEEcCChhHH-----hhhc-ccceeec
Q 045686 237 IGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSDLLDDSSQTGSKIVFTTRSEEVC-----GEMG-ARRRFRV 310 (885)
Q Consensus 237 ~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~~l~~~~~~gs~IivTTR~~~v~-----~~~~-~~~~~~l 310 (885)
..+....+...-..++..++||+|....+|+.....+. +.++. +|++|+-+..+. ..+. -...+.+
T Consensus 80 ----l~d~~~~~~~~~~~~~~yifLDEIq~v~~W~~~lk~l~---d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l 151 (398)
T COG1373 80 ----LLDLLRAYIELKEREKSYIFLDEIQNVPDWERALKYLY---DRGNL-DVLITGSSSSLLSKEISESLAGRGKDLEL 151 (398)
T ss_pred ----HHHHHHHHHHhhccCCceEEEecccCchhHHHHHHHHH---ccccc-eEEEECCchhhhccchhhhcCCCceeEEE
Confidence 11111122222222778999999999999887765555 44444 889988876542 2221 2356899
Q ss_pred cCCChHHHHHHH
Q 045686 311 ECLSPEAALDLF 322 (885)
Q Consensus 311 ~~L~~~~~~~Lf 322 (885)
.||+..|-..+-
T Consensus 152 ~PlSF~Efl~~~ 163 (398)
T COG1373 152 YPLSFREFLKLK 163 (398)
T ss_pred CCCCHHHHHhhc
Confidence 999999887654
No 244
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.35 E-value=8.7e-05 Score=65.32 Aligned_cols=89 Identities=22% Similarity=0.295 Sum_probs=76.5
Q ss_pred ceEEEecccCcccccccccCCCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCchhhhcccccceee
Q 045686 514 EAVRLSLWGSSIDFLALVEAPSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPEEIGRLKNLHHLN 593 (885)
Q Consensus 514 ~~~~l~l~~~~i~~~~~~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~ 593 (885)
.+..+++++|.+..-+-....+++.+.+|++.+|.+.. +|.. +..++.||.|+++.| .+...|..|..|.+|-+|+
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisd--vPeE-~Aam~aLr~lNl~~N-~l~~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISD--VPEE-LAAMPALRSLNLRFN-PLNAEPRVIAPLIKLDMLD 129 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhh--chHH-HhhhHHhhhcccccC-ccccchHHHHHHHhHHHhc
Confidence 46778888888776222233567899999999999998 9988 899999999999999 8999999999999999999
Q ss_pred ccCCcccccChhh
Q 045686 594 LSNTSIGCLPTAI 606 (885)
Q Consensus 594 Ls~~~i~~lp~~i 606 (885)
..+|.+..+|.++
T Consensus 130 s~~na~~eid~dl 142 (177)
T KOG4579|consen 130 SPENARAEIDVDL 142 (177)
T ss_pred CCCCccccCcHHH
Confidence 9999999998773
No 245
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=97.35 E-value=0.0011 Score=76.82 Aligned_cols=130 Identities=17% Similarity=0.226 Sum_probs=77.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--cc---EEEEEEEcC----cccH-----------------------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FD---LVIWVKVSR----DANL----------------------- 218 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~---~~~wv~v~~----~~~~----------------------- 218 (885)
..+.+++|+|+.|+|||||++.++.......+. |+ .+.|+.-.. ..++
T Consensus 25 ~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~ 104 (530)
T PRK15064 25 GGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYA 104 (530)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 567899999999999999999999876432222 21 123322110 0000
Q ss_pred ---------------------------HHHHHHHHHHcCCCccc-----cCCCChhHHHHHHHHHhcCCCeEEEEecCCC
Q 045686 219 ---------------------------EKIQESILRRFEIPDQM-----WIGKDEDGRANEILSNLRGKKFVLLLDDVWE 266 (885)
Q Consensus 219 ---------------------------~~~~~~i~~~l~~~~~~-----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~ 266 (885)
.....++++.+++.... ..-+..+...-.+.+.+..++-+++||+..+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~ 184 (530)
T PRK15064 105 LPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTN 184 (530)
T ss_pred ccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCc
Confidence 11223455566664210 0122344455567778888899999999998
Q ss_pred ccccccccccccccccCCCCCEEEEEcCChhHHhhh
Q 045686 267 RLDLSKVGVSDLLDDSSQTGSKIVFTTRSEEVCGEM 302 (885)
Q Consensus 267 ~~~~~~~~~~~~l~~~~~~gs~IivTTR~~~v~~~~ 302 (885)
..|.........+ ....|..||++|++.+....+
T Consensus 185 ~LD~~~~~~l~~~--l~~~~~tiiivsHd~~~~~~~ 218 (530)
T PRK15064 185 NLDINTIRWLEDV--LNERNSTMIIISHDRHFLNSV 218 (530)
T ss_pred ccCHHHHHHHHHH--HHhCCCeEEEEeCCHHHHHhh
Confidence 8776544222111 112467899999998765543
No 246
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=97.34 E-value=0.00095 Score=68.44 Aligned_cols=138 Identities=17% Similarity=0.183 Sum_probs=77.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--cc-------------EEEEEEEcCcc----cH-------------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FD-------------LVIWVKVSRDA----NL------------- 218 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~-------------~~~wv~v~~~~----~~------------- 218 (885)
.++.+++|+|+.|+|||||++.++....+..+. ++ .+.++.-.... ++
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~ 104 (236)
T TIGR03864 25 RPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHGL 104 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhcCC
Confidence 567899999999999999999998765432121 11 11222110000 11
Q ss_pred -----HHHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccC-CCCC
Q 045686 219 -----EKIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSS-QTGS 287 (885)
Q Consensus 219 -----~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~-~~gs 287 (885)
.....++++.+++.... ..-+..+...-.+.+.+..++-+++||+.....|........ .+.... ..|.
T Consensus 105 ~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~ 184 (236)
T TIGR03864 105 SRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGL 184 (236)
T ss_pred CHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 11123445555553210 011223344445777888899999999998877654332111 111122 2478
Q ss_pred EEEEEcCChhHHhhhcccceeec
Q 045686 288 KIVFTTRSEEVCGEMGARRRFRV 310 (885)
Q Consensus 288 ~IivTTR~~~v~~~~~~~~~~~l 310 (885)
.||++|++.+.+.. ..+.+.+
T Consensus 185 tiii~sH~~~~~~~--~d~i~~l 205 (236)
T TIGR03864 185 SVLWATHLVDEIEA--DDRLVVL 205 (236)
T ss_pred EEEEEecChhhHhh--CCEEEEE
Confidence 89999999876653 4444444
No 247
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.34 E-value=0.001 Score=67.08 Aligned_cols=131 Identities=15% Similarity=0.135 Sum_probs=74.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--c------------cEEEEEEEcC----cccH--------------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--F------------DLVIWVKVSR----DANL-------------- 218 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f------------~~~~wv~v~~----~~~~-------------- 218 (885)
.++.+++|+|+.|+|||||++.++....+..+. | ..+.++.-.. ..++
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~ 103 (213)
T cd03301 24 ADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVP 103 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecChhhccCCCHHHHHHHHHHhcCCC
Confidence 567899999999999999999999875432111 1 1122322110 0111
Q ss_pred ----HHHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccC-CCCCE
Q 045686 219 ----EKIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSS-QTGSK 288 (885)
Q Consensus 219 ----~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~-~~gs~ 288 (885)
.+...++++.+++.... ..-+..+...-.+.+.+..++-+++||+.....|........ .+.... ..|..
T Consensus 104 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~t 183 (213)
T cd03301 104 KDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTT 183 (213)
T ss_pred HHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCE
Confidence 11123445555553210 011233444445777788888999999998887765432211 111112 23788
Q ss_pred EEEEcCChhHHhh
Q 045686 289 IVFTTRSEEVCGE 301 (885)
Q Consensus 289 IivTTR~~~v~~~ 301 (885)
||++|++.+.+..
T Consensus 184 vi~~sH~~~~~~~ 196 (213)
T cd03301 184 TIYVTHDQVEAMT 196 (213)
T ss_pred EEEEeCCHHHHHH
Confidence 9999999865544
No 248
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=97.34 E-value=0.0014 Score=65.71 Aligned_cols=135 Identities=18% Similarity=0.216 Sum_probs=72.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--cc--------------EEEEEEEcCcccH--HHHH----------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FD--------------LVIWVKVSRDANL--EKIQ---------- 222 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~--------------~~~wv~v~~~~~~--~~~~---------- 222 (885)
.++.+++|.|+.|+|||||++.++.......+. |+ .+.++ .+.+.. ..+.
T Consensus 32 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v--~q~~~~~~~tv~~~l~~~~~~~ 109 (207)
T cd03369 32 KAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTII--PQDPTLFSGTIRSNLDPFDEYS 109 (207)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEEE--ecCCcccCccHHHHhcccCCCC
Confidence 567899999999999999999998765332121 11 12222 111100 0111
Q ss_pred -HHHHHHcCCCccccCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCCCCCEEEEEcCChhHHh
Q 045686 223 -ESILRRFEIPDQMWIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQTGSKIVFTTRSEEVCG 300 (885)
Q Consensus 223 -~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~gs~IivTTR~~~v~~ 300 (885)
.++.+.+........-+..+...-.+.+.+..++-++++|+.....|........ .+... ..|..||++|++.+...
T Consensus 110 ~~~~~~~l~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~-~~~~tiii~th~~~~~~ 188 (207)
T cd03369 110 DEEIYGALRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREE-FTNSTILTIAHRLRTII 188 (207)
T ss_pred HHHHHHHhhccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHh-cCCCEEEEEeCCHHHHh
Confidence 1111222211111111223344445677777888999999998876654332111 11112 23788999999887654
Q ss_pred hhcccceeec
Q 045686 301 EMGARRRFRV 310 (885)
Q Consensus 301 ~~~~~~~~~l 310 (885)
. .++.+.+
T Consensus 189 ~--~d~v~~l 196 (207)
T cd03369 189 D--YDKILVM 196 (207)
T ss_pred h--CCEEEEE
Confidence 3 3444444
No 249
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=97.33 E-value=0.0012 Score=74.54 Aligned_cols=138 Identities=18% Similarity=0.202 Sum_probs=84.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCc-----cEEEEEEEcC-c--------------c-c-HHHHHHHHHHH
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDF-----DLVIWVKVSR-D--------------A-N-LEKIQESILRR 228 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f-----~~~~wv~v~~-~--------------~-~-~~~~~~~i~~~ 228 (885)
.....|+|+|+.|+|||||.+.+.....+..+.. -.+.|+.-.. . + + ...-.+..+.+
T Consensus 346 ~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~ 425 (530)
T COG0488 346 DRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGR 425 (530)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHH
Confidence 5678899999999999999999976653321211 1122322111 0 0 1 13445666777
Q ss_pred cCCCcccc-----CCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccccccccCCCCCEEEEEcCChhHHhhhc
Q 045686 229 FEIPDQMW-----IGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSDLLDDSSQTGSKIVFTTRSEEVCGEMG 303 (885)
Q Consensus 229 l~~~~~~~-----~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~~l~~~~~~gs~IivTTR~~~v~~~~~ 303 (885)
++.+.+.. .-+..+...-.+...+..++-+||||+..+..|.+.+...-.. ...-...||++|+++.......
T Consensus 426 f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~a--L~~f~Gtvl~VSHDr~Fl~~va 503 (530)
T COG0488 426 FGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEA--LLDFEGTVLLVSHDRYFLDRVA 503 (530)
T ss_pred cCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHH--HHhCCCeEEEEeCCHHHHHhhc
Confidence 77655431 1122333444566777889999999999999887665221100 1122357999999998877654
Q ss_pred ccceeecc
Q 045686 304 ARRRFRVE 311 (885)
Q Consensus 304 ~~~~~~l~ 311 (885)
...+.+.
T Consensus 504 -~~i~~~~ 510 (530)
T COG0488 504 -TRIWLVE 510 (530)
T ss_pred -ceEEEEc
Confidence 4445444
No 250
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=97.33 E-value=0.0013 Score=66.72 Aligned_cols=136 Identities=21% Similarity=0.282 Sum_probs=78.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--cc--------------EEEEEEEcCcc-----cH-----------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FD--------------LVIWVKVSRDA-----NL----------- 218 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~--------------~~~wv~v~~~~-----~~----------- 218 (885)
.++.+++|+|+.|+|||||++.++....+..+. ++ .+.++. +.+ ++
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~--q~~~l~~~tv~enl~~~~~~~ 108 (225)
T PRK10247 31 RAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCA--QTPTLFGDTVYDNLIFPWQIR 108 (225)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEEEe--cccccccccHHHHHHhHHhhc
Confidence 567899999999999999999999865332121 11 112221 111 11
Q ss_pred -----HHHHHHHHHHcCCCcc--c---cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-ccccc-CCCC
Q 045686 219 -----EKIQESILRRFEIPDQ--M---WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDS-SQTG 286 (885)
Q Consensus 219 -----~~~~~~i~~~l~~~~~--~---~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~-~~~g 286 (885)
.....++++.+++... . ..-+..+...-.+.+.+..++-+++||+.....|........ .+... ...|
T Consensus 109 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ 188 (225)
T PRK10247 109 NQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQN 188 (225)
T ss_pred CCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 1123355666666321 0 011223344445778888899999999998877765432221 11112 2247
Q ss_pred CEEEEEcCChhHHhhhcccceeec
Q 045686 287 SKIVFTTRSEEVCGEMGARRRFRV 310 (885)
Q Consensus 287 s~IivTTR~~~v~~~~~~~~~~~l 310 (885)
..||++|++.+... . ..+.+.+
T Consensus 189 ~tvii~sh~~~~~~-~-~d~i~~l 210 (225)
T PRK10247 189 IAVLWVTHDKDEIN-H-ADKVITL 210 (225)
T ss_pred CEEEEEECChHHHH-h-CCEEEEE
Confidence 88999999987764 2 4444444
No 251
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=97.33 E-value=0.0012 Score=67.47 Aligned_cols=131 Identities=19% Similarity=0.222 Sum_probs=73.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--c---------------cEEEEEEEcCc----ccHH----------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--F---------------DLVIWVKVSRD----ANLE---------- 219 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f---------------~~~~wv~v~~~----~~~~---------- 219 (885)
.++.+++|+|+.|+|||||++.++....+..+. + ..+.++.-... .++.
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~ 103 (232)
T cd03218 24 KQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIR 103 (232)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhc
Confidence 467899999999999999999998765432111 1 01222211000 0111
Q ss_pred --------HHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCCCC
Q 045686 220 --------KIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQTG 286 (885)
Q Consensus 220 --------~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~g 286 (885)
....++++.+++.... ..-+..+...-.+.+.+..++-+++||+.....|........ .+......|
T Consensus 104 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~ 183 (232)
T cd03218 104 GLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRG 183 (232)
T ss_pred CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCC
Confidence 1123444555543210 011223344445777888899999999998877765432111 111122347
Q ss_pred CEEEEEcCChhHHhh
Q 045686 287 SKIVFTTRSEEVCGE 301 (885)
Q Consensus 287 s~IivTTR~~~v~~~ 301 (885)
..||++|++.+....
T Consensus 184 ~tii~~sH~~~~~~~ 198 (232)
T cd03218 184 IGVLITDHNVRETLS 198 (232)
T ss_pred CEEEEEeCCHHHHHH
Confidence 789999999764443
No 252
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=97.32 E-value=0.0013 Score=66.75 Aligned_cols=138 Identities=16% Similarity=0.195 Sum_probs=77.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--c------------------cEEEEEEEcC----cccHH-------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--F------------------DLVIWVKVSR----DANLE------- 219 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f------------------~~~~wv~v~~----~~~~~------- 219 (885)
.++.+++|+|+.|+|||||++.++....+..+. + ..+.++.-.. ..++.
T Consensus 29 ~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~ 108 (221)
T TIGR02211 29 GKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPL 108 (221)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHH
Confidence 567899999999999999999998765432111 0 1123332110 00111
Q ss_pred -----------HHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-ccccc-
Q 045686 220 -----------KIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDS- 282 (885)
Q Consensus 220 -----------~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~- 282 (885)
....++++.+++.... ..-+..+...-.+.+.+..++-+++||+.....|........ .+...
T Consensus 109 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~ 188 (221)
T TIGR02211 109 LIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELN 188 (221)
T ss_pred HhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHH
Confidence 1123455555553210 011223344445677777888899999998877654332111 11111
Q ss_pred CCCCCEEEEEcCChhHHhhhcccceeec
Q 045686 283 SQTGSKIVFTTRSEEVCGEMGARRRFRV 310 (885)
Q Consensus 283 ~~~gs~IivTTR~~~v~~~~~~~~~~~l 310 (885)
...|..||++|++.+.... .++.+.+
T Consensus 189 ~~~~~tii~~tH~~~~~~~--~d~v~~l 214 (221)
T TIGR02211 189 RELNTSFLVVTHDLELAKK--LDRVLEM 214 (221)
T ss_pred HhcCCEEEEEeCCHHHHhh--cCEEEEE
Confidence 2236789999999876653 2444444
No 253
>PRK08118 topology modulation protein; Reviewed
Probab=97.32 E-value=0.00014 Score=69.71 Aligned_cols=36 Identities=42% Similarity=0.697 Sum_probs=28.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEE
Q 045686 174 KVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIW 209 (885)
Q Consensus 174 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~w 209 (885)
+.|.|+|++|+||||||+.+++.....--+|+..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 358899999999999999999987533345666665
No 254
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.0055 Score=63.38 Aligned_cols=195 Identities=18% Similarity=0.249 Sum_probs=114.1
Q ss_pred ccchhHHHHHHHHHhhc-------------CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHH
Q 045686 154 TVGLDSIISEVWRCIED-------------HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEK 220 (885)
Q Consensus 154 ~vgr~~~~~~l~~~L~~-------------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~ 220 (885)
+=|.++.+++|.+...- ++++=|.++|++|.|||-||++|++... ..| +.|... +
T Consensus 153 IGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~---AtF-----IrvvgS----E 220 (406)
T COG1222 153 IGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTD---ATF-----IRVVGS----E 220 (406)
T ss_pred ccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccC---ceE-----EEeccH----H
Confidence 34899999999988721 4567788999999999999999999873 333 333221 2
Q ss_pred HHHHHHHHcCCCccccCCCChhHHHHHHHHHhc-CCCeEEEEecCCCcc----------c--cc----ccccc-cccccc
Q 045686 221 IQESILRRFEIPDQMWIGKDEDGRANEILSNLR-GKKFVLLLDDVWERL----------D--LS----KVGVS-DLLDDS 282 (885)
Q Consensus 221 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVLDdv~~~~----------~--~~----~~~~~-~~l~~~ 282 (885)
+.+..+ | ....+...+.+.-+ ..+.+|++|+++... | .. ++... -.+ +
T Consensus 221 lVqKYi---G---------EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGF--D 286 (406)
T COG1222 221 LVQKYI---G---------EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGF--D 286 (406)
T ss_pred HHHHHh---c---------cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCC--C
Confidence 222111 1 11233344444333 467899999986420 0 00 00000 011 3
Q ss_pred CCCCCEEEEEcCChhHH-----hhhcccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCch----h
Q 045686 283 SQTGSKIVFTTRSEEVC-----GEMGARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLP----L 353 (885)
Q Consensus 283 ~~~gs~IivTTR~~~v~-----~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP----L 353 (885)
.....|||..|-..++. ..-.-++.+++..-+.+.=.++|+-++.......+-+ .+.+++.|.|.- -
T Consensus 287 ~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd----~e~la~~~~g~sGAdlk 362 (406)
T COG1222 287 PRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVD----LELLARLTEGFSGADLK 362 (406)
T ss_pred CCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcC----HHHHHHhcCCCchHHHH
Confidence 34467999988765543 2223346788886677777778887776665555555 456677777765 3
Q ss_pred HHHHHHHHHhcC--C---ChhhHHHHHHHH
Q 045686 354 ALVTIGHAMASR--M---GPTQWRYAVGEL 378 (885)
Q Consensus 354 ai~~~~~~l~~~--~---~~~~w~~~~~~l 378 (885)
||.+=|++++=+ + +.+.+..+.+..
T Consensus 363 aictEAGm~AiR~~R~~Vt~~DF~~Av~KV 392 (406)
T COG1222 363 AICTEAGMFAIRERRDEVTMEDFLKAVEKV 392 (406)
T ss_pred HHHHHHhHHHHHhccCeecHHHHHHHHHHH
Confidence 455555555433 2 345555555443
No 255
>PRK13409 putative ATPase RIL; Provisional
Probab=97.31 E-value=0.00093 Score=77.59 Aligned_cols=132 Identities=17% Similarity=0.217 Sum_probs=78.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCc-------------cE----------------EEEE--EEcCcc---
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDF-------------DL----------------VIWV--KVSRDA--- 216 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f-------------~~----------------~~wv--~v~~~~--- 216 (885)
.++.+++|+|+.|+|||||++.++....+..+.+ ++ +.+. .+.+.+
T Consensus 97 ~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~q~~~~~p~~~ 176 (590)
T PRK13409 97 KEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHKPQYVDLIPKVF 176 (590)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceeecccchhhhhhhh
Confidence 4678999999999999999999988764332222 11 0110 011111
Q ss_pred --cH---------HHHHHHHHHHcCCCccc---c-CCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-ccc
Q 045686 217 --NL---------EKIQESILRRFEIPDQM---W-IGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLD 280 (885)
Q Consensus 217 --~~---------~~~~~~i~~~l~~~~~~---~-~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~ 280 (885)
++ .....++++.+++.... . .-+..+...-.+...+..++-+++||+..+..|........ .+.
T Consensus 177 ~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~ 256 (590)
T PRK13409 177 KGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIR 256 (590)
T ss_pred cchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHH
Confidence 11 12234566666664310 0 11223444456777888889999999999887765432111 111
Q ss_pred ccCCCCCEEEEEcCChhHHhhhc
Q 045686 281 DSSQTGSKIVFTTRSEEVCGEMG 303 (885)
Q Consensus 281 ~~~~~gs~IivTTR~~~v~~~~~ 303 (885)
.... |..||++|++.+....+.
T Consensus 257 ~l~~-g~tvIivsHd~~~l~~~~ 278 (590)
T PRK13409 257 ELAE-GKYVLVVEHDLAVLDYLA 278 (590)
T ss_pred HHHC-CCEEEEEeCCHHHHHHhC
Confidence 1223 788999999988766543
No 256
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.31 E-value=0.002 Score=69.49 Aligned_cols=141 Identities=17% Similarity=0.185 Sum_probs=86.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCcc-EEEEEEEcCcccHHHHHHHHHHHcCCCccccCCCChhHHHHHHHH
Q 045686 172 NEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFD-LVIWVKVSRDANLEKIQESILRRFEIPDQMWIGKDEDGRANEILS 250 (885)
Q Consensus 172 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~-~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 250 (885)
....+.|+|..|.|||.|++.+.+.... ...+ .+++++ .+....+++.++.. .-....++
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~--~~~~a~v~y~~------se~f~~~~v~a~~~-----------~~~~~Fk~ 172 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALA--NGPNARVVYLT------SEDFTNDFVKALRD-----------NEMEKFKE 172 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHh--hCCCceEEecc------HHHHHHHHHHHHHh-----------hhHHHHHH
Confidence 4688999999999999999999998852 2222 244432 22333333333211 12233444
Q ss_pred HhcCCCeEEEEecCCCccccc----cccccccccccCCCCCEEEEEcCC---------hhHHhhhcccceeeccCCChHH
Q 045686 251 NLRGKKFVLLLDDVWERLDLS----KVGVSDLLDDSSQTGSKIVFTTRS---------EEVCGEMGARRRFRVECLSPEA 317 (885)
Q Consensus 251 ~l~~k~~LlVLDdv~~~~~~~----~~~~~~~l~~~~~~gs~IivTTR~---------~~v~~~~~~~~~~~l~~L~~~~ 317 (885)
.. .--++++||++.-...+ ++-..+. .....|..||+|++. +.+...+...-.+.+.+.+.+.
T Consensus 173 ~y--~~dlllIDDiq~l~gk~~~qeefFh~FN--~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~ 248 (408)
T COG0593 173 KY--SLDLLLIDDIQFLAGKERTQEEFFHTFN--ALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDET 248 (408)
T ss_pred hh--ccCeeeechHhHhcCChhHHHHHHHHHH--HHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHH
Confidence 44 44589999997532221 1111111 022345589999964 2345556667789999999999
Q ss_pred HHHHHHHHhcCcccCCcc
Q 045686 318 ALDLFRYKVGEDVYSSHF 335 (885)
Q Consensus 318 ~~~Lf~~~~~~~~~~~~~ 335 (885)
...++.+++.......++
T Consensus 249 r~aiL~kka~~~~~~i~~ 266 (408)
T COG0593 249 RLAILRKKAEDRGIEIPD 266 (408)
T ss_pred HHHHHHHHHHhcCCCCCH
Confidence 999999988655544443
No 257
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=97.31 E-value=0.0013 Score=67.18 Aligned_cols=138 Identities=20% Similarity=0.257 Sum_probs=77.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--c------------------cEEEEEEEc----CcccHH-------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--F------------------DLVIWVKVS----RDANLE------- 219 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f------------------~~~~wv~v~----~~~~~~------- 219 (885)
.++.+++|+|+.|+|||||++.++.-..+..+. | ..+.++.-. ...++.
T Consensus 34 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~ 113 (228)
T PRK10584 34 KRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPA 113 (228)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHH
Confidence 567999999999999999999999875432111 0 112222210 000111
Q ss_pred -----------HHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-ccccc-
Q 045686 220 -----------KIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDS- 282 (885)
Q Consensus 220 -----------~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~- 282 (885)
.-..++++.+++.... ..-+..+...-.+.+.+...+-+++||+.....|........ .+...
T Consensus 114 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 193 (228)
T PRK10584 114 LLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLN 193 (228)
T ss_pred HhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Confidence 1123345555543210 011223344445677777888899999998887754432221 11112
Q ss_pred CCCCCEEEEEcCChhHHhhhcccceeec
Q 045686 283 SQTGSKIVFTTRSEEVCGEMGARRRFRV 310 (885)
Q Consensus 283 ~~~gs~IivTTR~~~v~~~~~~~~~~~l 310 (885)
...|..||++|++.+.... ..+.+.+
T Consensus 194 ~~~~~tii~~sH~~~~~~~--~d~i~~l 219 (228)
T PRK10584 194 REHGTTLILVTHDLQLAAR--CDRRLRL 219 (228)
T ss_pred HhcCCEEEEEecCHHHHHh--CCEEEEE
Confidence 2237789999999876543 3444444
No 258
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.31 E-value=0.0013 Score=67.99 Aligned_cols=132 Identities=18% Similarity=0.210 Sum_probs=75.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCc-------------cE----------------EEEEE--EcCc----
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDF-------------DL----------------VIWVK--VSRD---- 215 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f-------------~~----------------~~wv~--v~~~---- 215 (885)
.++.+++|+|++|+|||||.+.++.-..+..+.. +. +.++. +...
T Consensus 24 ~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 103 (255)
T cd03236 24 REGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVKPQYVDLIPKAV 103 (255)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHhhhcccceeeecchhccCchHH
Confidence 5678999999999999999999998775432221 11 01110 0000
Q ss_pred ----------ccHHHHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCcccccccccc-cccc
Q 045686 216 ----------ANLEKIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVS-DLLD 280 (885)
Q Consensus 216 ----------~~~~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~-~~l~ 280 (885)
........++++.+++.... ..-+..+...-.+.+.+...+-++++|+..+..|....... -.+.
T Consensus 104 ~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~ 183 (255)
T cd03236 104 KGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIR 183 (255)
T ss_pred HHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHH
Confidence 01123345566666654311 01122333444566777778889999999887765532111 1111
Q ss_pred ccCCCCCEEEEEcCChhHHhhh
Q 045686 281 DSSQTGSKIVFTTRSEEVCGEM 302 (885)
Q Consensus 281 ~~~~~gs~IivTTR~~~v~~~~ 302 (885)
.....|..||++|++.+.....
T Consensus 184 ~l~~~~~tIIiiSHd~~~~~~~ 205 (255)
T cd03236 184 ELAEDDNYVLVVEHDLAVLDYL 205 (255)
T ss_pred HHHhcCCEEEEEECCHHHHHHh
Confidence 1223467899999998766543
No 259
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.30 E-value=4.7e-05 Score=74.70 Aligned_cols=87 Identities=26% Similarity=0.297 Sum_probs=52.1
Q ss_pred hcCCcccEEecCCCCCCC-c----CchhhhcccccceeeccCCcc----cccChh-------hhccccccEeecCCcccc
Q 045686 560 DSMDALEVLDLSYNLDLN-Q----LPEEIGRLKNLHHLNLSNTSI----GCLPTA-------IKRLIKLKVLLLDGIQCH 623 (885)
Q Consensus 560 ~~l~~L~~L~Ls~~~~i~-~----lp~~i~~L~~L~~L~Ls~~~i----~~lp~~-------i~~L~~L~~L~l~~~~~l 623 (885)
..+..+..++||+| -|. . +...|.+-.+|+..+++.-.. .++|.. +-+|++|+..+||+|-+.
T Consensus 27 ~~~d~~~evdLSGN-tigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 27 EMMDELVEVDLSGN-TIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HhhcceeEEeccCC-cccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 33667777777777 333 2 333445556677777765311 233333 446777888888877655
Q ss_pred cccCCc---ccccCcccceeccccccc
Q 045686 624 LSIPEG---VISSLSSLQVFSCFSTEL 647 (885)
Q Consensus 624 ~~lp~~---~i~~L~~L~~L~l~~~~~ 647 (885)
...|.. .|++-+.|.||.+++|.+
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCC
Confidence 555532 256677778887777754
No 260
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=97.30 E-value=0.00084 Score=66.38 Aligned_cols=121 Identities=20% Similarity=0.243 Sum_probs=68.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh--ccCCCC--ccE-----------EEEEEEcCccc---HHHHHHHHHHHcCCC
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKF--RDTGHD--FDL-----------VIWVKVSRDAN---LEKIQESILRRFEIP 232 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~--~~~~~~--f~~-----------~~wv~v~~~~~---~~~~~~~i~~~l~~~ 232 (885)
.+..+++|.|+.|+|||||.+.++... .+..+. |+. +.+ +.+... ...+...+.......
T Consensus 33 ~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~--~~q~~~~~~~~t~~~~i~~~~~~~ 110 (194)
T cd03213 33 KPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGY--VPQDDILHPTLTVRETLMFAAKLR 110 (194)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhheEEE--ccCcccCCCCCcHHHHHHHHHHhc
Confidence 567899999999999999999999875 432221 110 111 122211 011222221100000
Q ss_pred ccccCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCCCCCEEEEEcCChh
Q 045686 233 DQMWIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQTGSKIVFTTRSEE 297 (885)
Q Consensus 233 ~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~gs~IivTTR~~~ 297 (885)
.-+..+...-.+.+.+..++-++++|+..+..|........ .+......|..||++|++.+
T Consensus 111 ----~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 172 (194)
T cd03213 111 ----GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPS 172 (194)
T ss_pred ----cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch
Confidence 12233444456778888888999999998877654432211 11112334788999999864
No 261
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.29 E-value=0.00086 Score=66.74 Aligned_cols=131 Identities=19% Similarity=0.219 Sum_probs=75.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--c-------------cEEEEEEEc----CcccHHH-----------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--F-------------DLVIWVKVS----RDANLEK----------- 220 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f-------------~~~~wv~v~----~~~~~~~----------- 220 (885)
.++.+++|+|+.|+|||||++.++....+..+. + ..+.|+.-. ...++.+
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~~~ 104 (200)
T PRK13540 25 PAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFSPG 104 (200)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEeccccccCcCCCHHHHHHHHHhcCcc
Confidence 578999999999999999999998876432111 0 112222200 0111111
Q ss_pred --HHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCCCCCEEEEEc
Q 045686 221 --IQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQTGSKIVFTT 293 (885)
Q Consensus 221 --~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~gs~IivTT 293 (885)
-..++++.+++.... ..-+..+...-.+.+.+..++-++++|+.....|........ .+......|..||+||
T Consensus 105 ~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~s 184 (200)
T PRK13540 105 AVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTS 184 (200)
T ss_pred hHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 123455555543210 011223444455777788889999999998877654332211 1111223478899999
Q ss_pred CChhHHhh
Q 045686 294 RSEEVCGE 301 (885)
Q Consensus 294 R~~~v~~~ 301 (885)
++......
T Consensus 185 h~~~~~~~ 192 (200)
T PRK13540 185 HQDLPLNK 192 (200)
T ss_pred CCchhccc
Confidence 99765544
No 262
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.29 E-value=0.0013 Score=61.03 Aligned_cols=127 Identities=15% Similarity=0.171 Sum_probs=74.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEE----------------------------EcCcc------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVK----------------------------VSRDA------ 216 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~----------------------------v~~~~------ 216 (885)
....+++|+|++|.|||||...|+.-..+. .+.+|+. |.++.
T Consensus 23 ~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~----~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P 98 (231)
T COG3840 23 PAGEIVAILGPSGAGKSTLLNLIAGFETPA----SGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSP 98 (231)
T ss_pred cCCcEEEEECCCCccHHHHHHHHHhccCCC----CceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCc
Confidence 467899999999999999999998765332 2345553 11110
Q ss_pred ------cHHHHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCcccccc--ccccccccccCC
Q 045686 217 ------NLEKIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSK--VGVSDLLDDSSQ 284 (885)
Q Consensus 217 ------~~~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~--~~~~~~l~~~~~ 284 (885)
.-.+-...++.+.|+.... ..-+..+.....+.+.+-..+-++.||+.....|..- -+..+...-+..
T Consensus 99 ~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E 178 (231)
T COG3840 99 GLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDE 178 (231)
T ss_pred ccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHh
Confidence 0123345566666654311 0122333444456666666666778999987765421 111121112566
Q ss_pred CCCEEEEEcCChhHHhh
Q 045686 285 TGSKIVFTTRSEEVCGE 301 (885)
Q Consensus 285 ~gs~IivTTR~~~v~~~ 301 (885)
++-++++.|+..+-+..
T Consensus 179 ~~~TllmVTH~~~Da~~ 195 (231)
T COG3840 179 RKMTLLMVTHHPEDAAR 195 (231)
T ss_pred hCCEEEEEeCCHHHHHH
Confidence 78889998888654443
No 263
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=97.29 E-value=0.0014 Score=67.13 Aligned_cols=132 Identities=18% Similarity=0.187 Sum_probs=76.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--c------------------cEEEEEEEcC----cccHH-------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--F------------------DLVIWVKVSR----DANLE------- 219 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f------------------~~~~wv~v~~----~~~~~------- 219 (885)
.++.+++|+|+.|+|||||++.++....+..+. | ..+.++.-.. ..++.
T Consensus 33 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~ 112 (233)
T PRK11629 33 GEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPL 112 (233)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHH
Confidence 567899999999999999999998765432110 0 1122222110 00111
Q ss_pred -----------HHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-ccccc-
Q 045686 220 -----------KIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDS- 282 (885)
Q Consensus 220 -----------~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~- 282 (885)
....++++.+++.... ..-+..+...-.+.+.+..++-+++||+.....|........ .+...
T Consensus 113 ~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~ 192 (233)
T PRK11629 113 LIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELN 192 (233)
T ss_pred HhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Confidence 1233455666654211 011223344445777788899999999998887765432211 11112
Q ss_pred CCCCCEEEEEcCChhHHhhh
Q 045686 283 SQTGSKIVFTTRSEEVCGEM 302 (885)
Q Consensus 283 ~~~gs~IivTTR~~~v~~~~ 302 (885)
...|..||++|++.+.+...
T Consensus 193 ~~~g~tvii~sH~~~~~~~~ 212 (233)
T PRK11629 193 RLQGTAFLVVTHDLQLAKRM 212 (233)
T ss_pred HhCCCEEEEEeCCHHHHHhh
Confidence 22478899999998766544
No 264
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=97.29 E-value=0.0011 Score=66.13 Aligned_cols=127 Identities=18% Similarity=0.179 Sum_probs=72.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCc---------------cEEEEEEEcC----cccH------------H
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDF---------------DLVIWVKVSR----DANL------------E 219 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f---------------~~~~wv~v~~----~~~~------------~ 219 (885)
.++.+++|+|.+|+|||||.+.++....+..+.. ..+.|+.-.. ..++ .
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~ 103 (201)
T cd03231 24 AAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENLRFWHADHSD 103 (201)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEeccccccCCCcCHHHHHHhhcccccH
Confidence 5688999999999999999999987754321110 0122221000 0011 1
Q ss_pred HHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCCCCCEEEEEcC
Q 045686 220 KIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQTGSKIVFTTR 294 (885)
Q Consensus 220 ~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~gs~IivTTR 294 (885)
+-..++++.+++.... ..-+..+...-.+.+.+..++-++++|+..+..|........ .+......|..||++|+
T Consensus 104 ~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH 183 (201)
T cd03231 104 EQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTH 183 (201)
T ss_pred HHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 2234555666654211 011223444445777888888899999998876654331111 11112234778999998
Q ss_pred Chh
Q 045686 295 SEE 297 (885)
Q Consensus 295 ~~~ 297 (885)
+..
T Consensus 184 ~~~ 186 (201)
T cd03231 184 QDL 186 (201)
T ss_pred Cch
Confidence 754
No 265
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=97.29 E-value=0.00082 Score=66.80 Aligned_cols=124 Identities=19% Similarity=0.234 Sum_probs=70.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--c-------------cEEEEEEEcCc------ccHH----------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--F-------------DLVIWVKVSRD------ANLE---------- 219 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f-------------~~~~wv~v~~~------~~~~---------- 219 (885)
.++.+++|+|+.|+|||||++.++....+..+. + ..+.++. +. .++.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~--q~~~~~~~~tv~~~l~~~~~~~ 101 (198)
T TIGR01189 24 NAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLG--HLPGLKPELSALENLHFWAAIH 101 (198)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEec--cCcccccCCcHHHHHHHHHHHc
Confidence 567899999999999999999998875432221 1 0112221 11 1111
Q ss_pred ----HHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCCCCCEEE
Q 045686 220 ----KIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQTGSKIV 290 (885)
Q Consensus 220 ----~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~gs~Ii 290 (885)
....++++.+++.... ..-+..+...-.+.+.+..++-++++|++.+..|........ .+......|..||
T Consensus 102 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii 181 (198)
T TIGR01189 102 GGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVL 181 (198)
T ss_pred CCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 1123344555543210 011223344445777888899999999999887754332111 1111223467899
Q ss_pred EEcCCh
Q 045686 291 FTTRSE 296 (885)
Q Consensus 291 vTTR~~ 296 (885)
++|++.
T Consensus 182 ~~sH~~ 187 (198)
T TIGR01189 182 LTTHQD 187 (198)
T ss_pred EEEccc
Confidence 999876
No 266
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=97.28 E-value=0.0016 Score=69.39 Aligned_cols=132 Identities=18% Similarity=0.155 Sum_probs=74.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--c-------------cEEEEEEEcC----cccHHH-----------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--F-------------DLVIWVKVSR----DANLEK----------- 220 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f-------------~~~~wv~v~~----~~~~~~----------- 220 (885)
.++.+++|+|+.|+|||||++.+.....+..+. + ..+.++.-.. ..++.+
T Consensus 28 ~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~ 107 (303)
T TIGR01288 28 ARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGM 107 (303)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHcCC
Confidence 567899999999999999999998865432111 1 1122222110 011111
Q ss_pred -------HHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCCCCCE
Q 045686 221 -------IQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQTGSK 288 (885)
Q Consensus 221 -------~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~gs~ 288 (885)
...++++.+++.... ..-+..+...-.+.+.+..++-+++||+..+..|........ .+......|..
T Consensus 108 ~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~t 187 (303)
T TIGR01288 108 STREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKT 187 (303)
T ss_pred CHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCE
Confidence 112334444443210 011223334445777788899999999998887754332111 11112235789
Q ss_pred EEEEcCChhHHhhh
Q 045686 289 IVFTTRSEEVCGEM 302 (885)
Q Consensus 289 IivTTR~~~v~~~~ 302 (885)
||++|++.+.+..+
T Consensus 188 il~~sH~~~~~~~~ 201 (303)
T TIGR01288 188 ILLTTHFMEEAERL 201 (303)
T ss_pred EEEECCCHHHHHHh
Confidence 99999998766543
No 267
>PRK10908 cell division protein FtsE; Provisional
Probab=97.28 E-value=0.0014 Score=66.47 Aligned_cols=130 Identities=19% Similarity=0.188 Sum_probs=74.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--cc-----------------EEEEEEEcCcc------cHH------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FD-----------------LVIWVKVSRDA------NLE------ 219 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~-----------------~~~wv~v~~~~------~~~------ 219 (885)
.++.+++|+|+.|+|||||++.++....+..+. |+ .+.++. +.. ++.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~--q~~~~~~~~tv~~~l~~~ 103 (222)
T PRK10908 26 RPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIF--QDHHLLMDRTVYDNVAIP 103 (222)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEEEe--cCccccccccHHHHHHhH
Confidence 577999999999999999999998775432121 11 112221 111 110
Q ss_pred ---------H---HHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-ccccc
Q 045686 220 ---------K---IQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDS 282 (885)
Q Consensus 220 ---------~---~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~ 282 (885)
. ...++++.+++.... ..-+..+...-.+.+.+..++-+++||+.....|........ .+...
T Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 183 (222)
T PRK10908 104 LIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEF 183 (222)
T ss_pred HHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHH
Confidence 0 112344555543210 011223344445677778888999999998877754321111 11112
Q ss_pred CCCCCEEEEEcCChhHHhhh
Q 045686 283 SQTGSKIVFTTRSEEVCGEM 302 (885)
Q Consensus 283 ~~~gs~IivTTR~~~v~~~~ 302 (885)
...|..||++|++.+.....
T Consensus 184 ~~~~~tiii~sH~~~~~~~~ 203 (222)
T PRK10908 184 NRVGVTVLMATHDIGLISRR 203 (222)
T ss_pred HHCCCEEEEEeCCHHHHHHh
Confidence 23477899999998765543
No 268
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=97.28 E-value=0.0016 Score=66.65 Aligned_cols=131 Identities=18% Similarity=0.217 Sum_probs=73.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--cc-------------EEEEEEEcCc------ccHHH---------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FD-------------LVIWVKVSRD------ANLEK--------- 220 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~-------------~~~wv~v~~~------~~~~~--------- 220 (885)
.++.+++|+|+.|+|||||++.++....+..+. ++ .+.++. .+. .++.+
T Consensus 45 ~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~-~~~~~~~~~~tv~e~l~~~~~~~ 123 (236)
T cd03267 45 EKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVF-GQKTQLWWDLPVIDSFYLLAAIY 123 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEc-CCccccCCCCcHHHHHHHHHHHc
Confidence 567899999999999999999999865432121 10 111211 111 11111
Q ss_pred ---------HHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-ccccc-CCC
Q 045686 221 ---------IQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDS-SQT 285 (885)
Q Consensus 221 ---------~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~-~~~ 285 (885)
....+++.+++.... ..-+..+...-.+...+..++-+++||++.+..|........ .+... ...
T Consensus 124 ~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~ 203 (236)
T cd03267 124 DLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRER 203 (236)
T ss_pred CCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 112334444443210 011223334445777788888999999998887654432111 11112 223
Q ss_pred CCEEEEEcCChhHHhhh
Q 045686 286 GSKIVFTTRSEEVCGEM 302 (885)
Q Consensus 286 gs~IivTTR~~~v~~~~ 302 (885)
|..||++|++.+.+...
T Consensus 204 ~~tiiivsH~~~~~~~~ 220 (236)
T cd03267 204 GTTVLLTSHYMKDIEAL 220 (236)
T ss_pred CCEEEEEecCHHHHHHh
Confidence 77899999998765543
No 269
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.28 E-value=0.0012 Score=66.67 Aligned_cols=128 Identities=18% Similarity=0.226 Sum_probs=74.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--cc------------------EEEEEEEcCcc------cHH-----
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FD------------------LVIWVKVSRDA------NLE----- 219 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~------------------~~~wv~v~~~~------~~~----- 219 (885)
.+ .+++|+|+.|+|||||++.+.....+..+. |+ .+.++. +.. ++.
T Consensus 22 ~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~--q~~~~~~~~t~~~~l~~ 98 (214)
T cd03297 22 NE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVF--QQYALFPHLNVRENLAF 98 (214)
T ss_pred cc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEe--cCCccCCCCCHHHHHHH
Confidence 56 999999999999999999998775432221 10 122222 211 111
Q ss_pred -----------HHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-ccccc-
Q 045686 220 -----------KIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDS- 282 (885)
Q Consensus 220 -----------~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~- 282 (885)
....++++.+++.... ..-+..+...-.+.+.+..++-+++||+.....|........ .+...
T Consensus 99 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 178 (214)
T cd03297 99 GLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIK 178 (214)
T ss_pred HHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 1123455555553210 011223444455777888899999999998877755432211 11111
Q ss_pred CCCCCEEEEEcCChhHHhh
Q 045686 283 SQTGSKIVFTTRSEEVCGE 301 (885)
Q Consensus 283 ~~~gs~IivTTR~~~v~~~ 301 (885)
...|..||++|++.+....
T Consensus 179 ~~~~~tiii~sH~~~~~~~ 197 (214)
T cd03297 179 KNLNIPVIFVTHDLSEAEY 197 (214)
T ss_pred HHcCcEEEEEecCHHHHHH
Confidence 2237789999999876543
No 270
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.28 E-value=0.0012 Score=66.95 Aligned_cols=66 Identities=11% Similarity=0.109 Sum_probs=40.0
Q ss_pred hHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCCCCCEEEEEcCChhHHhhhcccceeec
Q 045686 242 DGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQTGSKIVFTTRSEEVCGEMGARRRFRV 310 (885)
Q Consensus 242 ~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~gs~IivTTR~~~v~~~~~~~~~~~l 310 (885)
+...-.+.+.+..++-++++|++....|........ .+. ....+..||++|++.+.... ..+.+.+
T Consensus 144 ~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~-~~~~~~tii~~sh~~~~~~~--~d~i~~l 210 (221)
T cd03244 144 QRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIR-EAFKDCTVLTIAHRLDTIID--SDRILVL 210 (221)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHH-HhcCCCEEEEEeCCHHHHhh--CCEEEEE
Confidence 334445677777888899999998877654332111 111 11235789999988766543 3444444
No 271
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=97.27 E-value=0.0016 Score=69.16 Aligned_cols=61 Identities=20% Similarity=0.186 Sum_probs=39.9
Q ss_pred hhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCCCCCEEEEEcCChhHHhh
Q 045686 241 EDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQTGSKIVFTTRSEEVCGE 301 (885)
Q Consensus 241 ~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~gs~IivTTR~~~v~~~ 301 (885)
.+...-.+.+.+..++-+++||+.....|........ .+......|..||++|++.+.+..
T Consensus 169 GqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~ 230 (305)
T PRK13651 169 GQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLE 230 (305)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHH
Confidence 3444456778888899999999998887765432211 111122347899999999875433
No 272
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=97.27 E-value=0.0016 Score=70.17 Aligned_cols=132 Identities=17% Similarity=0.134 Sum_probs=75.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--c-------------cEEEEEEEc----CcccHHH-----------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--F-------------DLVIWVKVS----RDANLEK----------- 220 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f-------------~~~~wv~v~----~~~~~~~----------- 220 (885)
..+.+++|+|+.|+|||||.+.+.....+..+. + ..+.++.-. ...++.+
T Consensus 65 ~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~ 144 (340)
T PRK13536 65 ASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGM 144 (340)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcCC
Confidence 578999999999999999999999876432221 0 012222110 0111111
Q ss_pred -------HHHHHHHHcCCCccc---c-CCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCCCCCE
Q 045686 221 -------IQESILRRFEIPDQM---W-IGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQTGSK 288 (885)
Q Consensus 221 -------~~~~i~~~l~~~~~~---~-~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~gs~ 288 (885)
...++++.+++.... . .-+..+...-.+...+..++-+++||+..+..|........ .+......|..
T Consensus 145 ~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~t 224 (340)
T PRK13536 145 STREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKT 224 (340)
T ss_pred CHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCE
Confidence 122344444543210 0 11223344445777888899999999999887754331111 11112235789
Q ss_pred EEEEcCChhHHhhh
Q 045686 289 IVFTTRSEEVCGEM 302 (885)
Q Consensus 289 IivTTR~~~v~~~~ 302 (885)
||+||++.+.+..+
T Consensus 225 ilisSH~l~e~~~~ 238 (340)
T PRK13536 225 ILLTTHFMEEAERL 238 (340)
T ss_pred EEEECCCHHHHHHh
Confidence 99999998765543
No 273
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.27 E-value=0.0012 Score=67.96 Aligned_cols=131 Identities=21% Similarity=0.174 Sum_probs=73.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--c------------cEEEEEEEcC----cccHH-------------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--F------------DLVIWVKVSR----DANLE------------- 219 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f------------~~~~wv~v~~----~~~~~------------- 219 (885)
.++.+++|+|+.|+|||||++.++....+..+. + ..+.++.-.. ..++.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~ 105 (239)
T cd03296 26 PSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRS 105 (239)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEecCCcccCCCCHHHHHhhhhhhcccc
Confidence 567899999999999999999998875432111 1 1122222100 00111
Q ss_pred ---------HHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccC-C
Q 045686 220 ---------KIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSS-Q 284 (885)
Q Consensus 220 ---------~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~-~ 284 (885)
....++++.+++.... ..-+..+...-.+.+.+..++-+++||++.+..|........ .+.... .
T Consensus 106 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~ 185 (239)
T cd03296 106 ERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDE 185 (239)
T ss_pred ccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH
Confidence 1123445555553210 011223344445677777888999999998877765432211 111112 2
Q ss_pred CCCEEEEEcCChhHHhh
Q 045686 285 TGSKIVFTTRSEEVCGE 301 (885)
Q Consensus 285 ~gs~IivTTR~~~v~~~ 301 (885)
.|..||++|++.+....
T Consensus 186 ~~~tvii~sH~~~~~~~ 202 (239)
T cd03296 186 LHVTTVFVTHDQEEALE 202 (239)
T ss_pred cCCEEEEEeCCHHHHHH
Confidence 36789999999875443
No 274
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.27 E-value=0.0014 Score=69.14 Aligned_cols=132 Identities=20% Similarity=0.132 Sum_probs=75.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--c------------------cEEEEEEEcC---cc--cHH------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--F------------------DLVIWVKVSR---DA--NLE------ 219 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f------------------~~~~wv~v~~---~~--~~~------ 219 (885)
..+.+++|+|+.|+|||||++.++....+..+. + ..+.|+.-.. -+ ++.
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~ 110 (280)
T PRK13649 31 EDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFG 110 (280)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhccccHHHHHHHH
Confidence 567899999999999999999998765322111 0 1123332211 01 110
Q ss_pred ------------HHHHHHHHHcCCCcc--c---cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccc
Q 045686 220 ------------KIQESILRRFEIPDQ--M---WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDD 281 (885)
Q Consensus 220 ------------~~~~~i~~~l~~~~~--~---~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~ 281 (885)
....++++.+++... . ..-+..+...-.+.+.+..++-+++||+..+..|........ .+..
T Consensus 111 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 190 (280)
T PRK13649 111 PQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKK 190 (280)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 112234455555321 0 011223444445777888899999999998887755432111 1111
Q ss_pred cCCCCCEEEEEcCChhHHhhh
Q 045686 282 SSQTGSKIVFTTRSEEVCGEM 302 (885)
Q Consensus 282 ~~~~gs~IivTTR~~~v~~~~ 302 (885)
....|..||++|++.+.+...
T Consensus 191 ~~~~~~tiiivsH~~~~~~~~ 211 (280)
T PRK13649 191 LHQSGMTIVLVTHLMDDVANY 211 (280)
T ss_pred HHHCCCEEEEEeccHHHHHHh
Confidence 223478899999998765443
No 275
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.27 E-value=0.002 Score=66.31 Aligned_cols=129 Identities=19% Similarity=0.220 Sum_probs=75.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--cc--------------EEEEEEEcCcc-----cH-----------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FD--------------LVIWVKVSRDA-----NL----------- 218 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~--------------~~~wv~v~~~~-----~~----------- 218 (885)
..+.+++|+|+.|+|||||++.++....+..+. |+ .+.++ .+.. ++
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~--~q~~~~~~~tv~e~l~~~~~~~ 104 (241)
T PRK14250 27 EGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMV--FQQPHLFEGTVKDNIEYGPMLK 104 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEE--ecCchhchhhHHHHHhcchhhc
Confidence 567899999999999999999999875432221 11 11222 1111 00
Q ss_pred ---HHHHHHHHHHcCCCcc--c--c-CCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCC-CCCE
Q 045686 219 ---EKIQESILRRFEIPDQ--M--W-IGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQ-TGSK 288 (885)
Q Consensus 219 ---~~~~~~i~~~l~~~~~--~--~-~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~-~gs~ 288 (885)
..-..++++.+++... . . .-+..+...-.+.+.+..++-++++|+..+..|........ .+..... .|..
T Consensus 105 ~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~t 184 (241)
T PRK14250 105 GEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLT 184 (241)
T ss_pred CcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCE
Confidence 1123345666666411 1 0 11223444455777788889999999998887765432211 1111222 3788
Q ss_pred EEEEcCChhHHhh
Q 045686 289 IVFTTRSEEVCGE 301 (885)
Q Consensus 289 IivTTR~~~v~~~ 301 (885)
||++|++.+....
T Consensus 185 ii~~sH~~~~~~~ 197 (241)
T PRK14250 185 VIWITHNMEQAKR 197 (241)
T ss_pred EEEEeccHHHHHH
Confidence 9999999876543
No 276
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=97.27 E-value=0.0018 Score=66.75 Aligned_cols=129 Identities=22% Similarity=0.201 Sum_probs=74.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--cc--------------------EEEEEEEcCcc------cHH---
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FD--------------------LVIWVKVSRDA------NLE--- 219 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~--------------------~~~wv~v~~~~------~~~--- 219 (885)
.++.+++|+|+.|+|||||++.++....+..+. ++ .+.++. +.. ++.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~--q~~~~~~~~tv~e~i 103 (242)
T PRK11124 26 PQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVF--QQYNLWPHLTVQQNL 103 (242)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhheEEEe--cCccccCCCcHHHHH
Confidence 567899999999999999999999875432111 10 122222 111 111
Q ss_pred ----------------HHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-c
Q 045686 220 ----------------KIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-L 278 (885)
Q Consensus 220 ----------------~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~ 278 (885)
....++++.+++.... ..-+..+...-.+.+.+..++-+++||+..+..|........ .
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~ 183 (242)
T PRK11124 104 IEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSI 183 (242)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHH
Confidence 1123344555553210 011223344445677778888999999999887765432211 1
Q ss_pred ccccCCCCCEEEEEcCChhHHhh
Q 045686 279 LDDSSQTGSKIVFTTRSEEVCGE 301 (885)
Q Consensus 279 l~~~~~~gs~IivTTR~~~v~~~ 301 (885)
+......|..||++|++.+....
T Consensus 184 l~~~~~~~~tii~~sh~~~~~~~ 206 (242)
T PRK11124 184 IRELAETGITQVIVTHEVEVARK 206 (242)
T ss_pred HHHHHHcCCEEEEEeCCHHHHHH
Confidence 11122347889999999876543
No 277
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=97.26 E-value=0.0021 Score=66.74 Aligned_cols=129 Identities=16% Similarity=0.193 Sum_probs=74.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhh--hccCCCC--c-------------c--EEEEEEEcCcc------cHH------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNK--FRDTGHD--F-------------D--LVIWVKVSRDA------NLE------ 219 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~--~~~~~~~--f-------------~--~~~wv~v~~~~------~~~------ 219 (885)
.++.+++|+|..|+|||||++.++.. ..+..+. + . .+.+ +.+.+ +..
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~--~~q~~~~~~~~~~~~~l~~~ 108 (252)
T CHL00131 31 NKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGIFL--AFQYPIEIPGVSNADFLRLA 108 (252)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeEEE--EeccccccccccHHHHHHHh
Confidence 56789999999999999999999884 1111111 0 1 1112 21211 010
Q ss_pred -------------------HHHHHHHHHcCCCcc---c-c-C-CCChhHHHHHHHHHhcCCCeEEEEecCCCcccccccc
Q 045686 220 -------------------KIQESILRRFEIPDQ---M-W-I-GKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVG 274 (885)
Q Consensus 220 -------------------~~~~~i~~~l~~~~~---~-~-~-~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~ 274 (885)
....++++.+++... . . . -+..+...-.+.+.+..++-++++|+.....|.....
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~ 188 (252)
T CHL00131 109 YNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALK 188 (252)
T ss_pred hhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHH
Confidence 112334555555411 1 1 1 2223444456778888899999999998887765432
Q ss_pred ccc-cccccCCCCCEEEEEcCChhHHhh
Q 045686 275 VSD-LLDDSSQTGSKIVFTTRSEEVCGE 301 (885)
Q Consensus 275 ~~~-~l~~~~~~gs~IivTTR~~~v~~~ 301 (885)
... .+......|..||++|++.+....
T Consensus 189 ~l~~~l~~~~~~g~tii~~tH~~~~~~~ 216 (252)
T CHL00131 189 IIAEGINKLMTSENSIILITHYQRLLDY 216 (252)
T ss_pred HHHHHHHHHHhCCCEEEEEecCHHHHHh
Confidence 211 111122347889999999876554
No 278
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=97.26 E-value=0.0015 Score=67.10 Aligned_cols=132 Identities=21% Similarity=0.228 Sum_probs=74.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--c---------------cEEEEEEEcC----cccHH----------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--F---------------DLVIWVKVSR----DANLE---------- 219 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f---------------~~~~wv~v~~----~~~~~---------- 219 (885)
.++.+++|+|+.|+|||||++.++....+..+. + ..+.++.-.. ..++.
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~ 103 (236)
T cd03219 24 RPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQAR 103 (236)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhhc
Confidence 467899999999999999999998765332111 1 1122322110 00111
Q ss_pred ------------------HHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc
Q 045686 220 ------------------KIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD 277 (885)
Q Consensus 220 ------------------~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~ 277 (885)
....++++.+++.... ..-+..+...-.+.+.+..++-++++|+..+..|........
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~ 183 (236)
T cd03219 104 TGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELA 183 (236)
T ss_pred cccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH
Confidence 1123444555553210 011223334445677778888999999998877654331111
Q ss_pred -cccccCCCCCEEEEEcCChhHHhhh
Q 045686 278 -LLDDSSQTGSKIVFTTRSEEVCGEM 302 (885)
Q Consensus 278 -~l~~~~~~gs~IivTTR~~~v~~~~ 302 (885)
.+......|..||++|++.+.+..+
T Consensus 184 ~~l~~~~~~~~tii~vsH~~~~~~~~ 209 (236)
T cd03219 184 ELIRELRERGITVLLVEHDMDVVMSL 209 (236)
T ss_pred HHHHHHHHCCCEEEEEecCHHHHHHh
Confidence 1111222577899999998765543
No 279
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.25 E-value=0.001 Score=65.76 Aligned_cols=121 Identities=21% Similarity=0.183 Sum_probs=67.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhc--cCCCC--cc----------EEEEEEEcCccc---HHHHHHHHHHHcCCCc
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFR--DTGHD--FD----------LVIWVKVSRDAN---LEKIQESILRRFEIPD 233 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~--~~~~~--f~----------~~~wv~v~~~~~---~~~~~~~i~~~l~~~~ 233 (885)
.++.+++|+|++|+|||||++.++.... +..+. |+ .+.|+ .+... ...+...+.......
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~--~q~~~~~~~~tv~~~l~~~~~~~- 107 (192)
T cd03232 31 KPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYV--EQQDVHSPNLTVREALRFSALLR- 107 (192)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEe--cccCccccCCcHHHHHHHHHHHh-
Confidence 5678999999999999999999997431 11111 11 12222 22211 011222221100000
Q ss_pred cccCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCCCCCEEEEEcCChh
Q 045686 234 QMWIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQTGSKIVFTTRSEE 297 (885)
Q Consensus 234 ~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~gs~IivTTR~~~ 297 (885)
.-+..+...-.+.+.+..++-++++|+.....|........ .+......|..||++|++.+
T Consensus 108 ---~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~ 169 (192)
T cd03232 108 ---GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPS 169 (192)
T ss_pred ---cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCCh
Confidence 12233444455777888888999999998877654332111 11112234788999999875
No 280
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=97.25 E-value=0.0017 Score=65.30 Aligned_cols=130 Identities=15% Similarity=0.167 Sum_probs=73.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--cc------------EEEEEEEcCc----ccH--------------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FD------------LVIWVKVSRD----ANL-------------- 218 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~------------~~~wv~v~~~----~~~-------------- 218 (885)
..+.+++|+|+.|+|||||++.++....+..+. |+ .+.++.-... .++
T Consensus 22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~~~ 101 (213)
T TIGR01277 22 ADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGLKL 101 (213)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHHhHhhccCCc
Confidence 578999999999999999999999876432221 11 1222221100 011
Q ss_pred ----HHHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-ccccc-CCCCCE
Q 045686 219 ----EKIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDS-SQTGSK 288 (885)
Q Consensus 219 ----~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~-~~~gs~ 288 (885)
.....++++.+++.... ..-+..+...-.+.+.+..++-++++|+.....|........ .+... ...|..
T Consensus 102 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t 181 (213)
T TIGR01277 102 NAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRT 181 (213)
T ss_pred cHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCE
Confidence 01123344555543210 011223344445667777888999999998877655332111 11111 223788
Q ss_pred EEEEcCChhHHh
Q 045686 289 IVFTTRSEEVCG 300 (885)
Q Consensus 289 IivTTR~~~v~~ 300 (885)
||++|++.+...
T Consensus 182 ii~vsh~~~~~~ 193 (213)
T TIGR01277 182 LLMVTHHLSDAR 193 (213)
T ss_pred EEEEeCCHHHHH
Confidence 999999976544
No 281
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=97.24 E-value=0.0018 Score=65.62 Aligned_cols=127 Identities=19% Similarity=0.203 Sum_probs=70.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--cc--------------EEEEEEEcCcc-----cHH----------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FD--------------LVIWVKVSRDA-----NLE---------- 219 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~--------------~~~wv~v~~~~-----~~~---------- 219 (885)
.++.+++|+|+.|+|||||++.+.....+..+. |+ .+.++ .+.. ++.
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~--~q~~~~~~~tv~e~l~~~~~~~ 105 (220)
T cd03245 28 RAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYV--PQDVTLFYGTLRDNITLGAPLA 105 (220)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEEe--CCCCccccchHHHHhhcCCCCC
Confidence 578999999999999999999998875432221 11 12222 1111 010
Q ss_pred --HHHHHHHHHcCCCcc--c-------------cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccc
Q 045686 220 --KIQESILRRFEIPDQ--M-------------WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDD 281 (885)
Q Consensus 220 --~~~~~i~~~l~~~~~--~-------------~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~ 281 (885)
....++++.+++... . ..-+..+...-.+.+.+..++-++++|+.....|........ .+..
T Consensus 106 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 185 (220)
T cd03245 106 DDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQ 185 (220)
T ss_pred CHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence 111223333333210 0 011223334445667777788899999998877655432111 1111
Q ss_pred cCCCCCEEEEEcCChhHHh
Q 045686 282 SSQTGSKIVFTTRSEEVCG 300 (885)
Q Consensus 282 ~~~~gs~IivTTR~~~v~~ 300 (885)
... +..||++|++.+...
T Consensus 186 ~~~-~~tii~~sH~~~~~~ 203 (220)
T cd03245 186 LLG-DKTLIIITHRPSLLD 203 (220)
T ss_pred hcC-CCEEEEEeCCHHHHH
Confidence 222 368999999987653
No 282
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.24 E-value=0.0012 Score=63.08 Aligned_cols=64 Identities=20% Similarity=0.190 Sum_probs=41.6
Q ss_pred hhHHHHHHHHHhcCCCeEEEEecCCCccccccc-cccccccccCCCCCEEEEEcCChhHHhhhccc
Q 045686 241 EDGRANEILSNLRGKKFVLLLDDVWERLDLSKV-GVSDLLDDSSQTGSKIVFTTRSEEVCGEMGAR 305 (885)
Q Consensus 241 ~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~-~~~~~l~~~~~~gs~IivTTR~~~v~~~~~~~ 305 (885)
.++..-.+.+.+.-++-+|.+|+..+..|.-.. .+.-.+. .-....+|||.|++.+-|..+++.
T Consensus 153 GQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~-eLk~~yTIviVTHnmqQAaRvSD~ 217 (253)
T COG1117 153 GQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELIT-ELKKKYTIVIVTHNMQQAARVSDY 217 (253)
T ss_pred hHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHH-HHHhccEEEEEeCCHHHHHHHhHh
Confidence 344444577888889999999999887665322 1111110 223567899999998877766543
No 283
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=97.24 E-value=0.002 Score=66.80 Aligned_cols=130 Identities=15% Similarity=0.135 Sum_probs=74.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhcc----CCCC--cc------------EEEEEEEcCc--cc----H--------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRD----TGHD--FD------------LVIWVKVSRD--AN----L-------- 218 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~----~~~~--f~------------~~~wv~v~~~--~~----~-------- 218 (885)
.++.+++|+|.+|+|||||++.++....+ ..+. ++ .+.++.-... +. .
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~ 106 (254)
T PRK10418 27 QRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETC 106 (254)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCccccHHHHHHHHH
Confidence 56789999999999999999999977543 1121 10 1222211110 11 0
Q ss_pred --------HHHHHHHHHHcCCCcc-----c--cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-ccccc
Q 045686 219 --------EKIQESILRRFEIPDQ-----M--WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDS 282 (885)
Q Consensus 219 --------~~~~~~i~~~l~~~~~-----~--~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~ 282 (885)
.....++++.+++... . ..-+..+...-.+.+.+..++-+++||+..+..|........ .+...
T Consensus 107 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~ 186 (254)
T PRK10418 107 LALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESI 186 (254)
T ss_pred HHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHH
Confidence 0122345555565421 0 011233444456778888899999999998877654321111 11111
Q ss_pred -CCCCCEEEEEcCChhHHh
Q 045686 283 -SQTGSKIVFTTRSEEVCG 300 (885)
Q Consensus 283 -~~~gs~IivTTR~~~v~~ 300 (885)
...|..||++|++.+...
T Consensus 187 ~~~~g~til~~sH~~~~~~ 205 (254)
T PRK10418 187 VQKRALGMLLVTHDMGVVA 205 (254)
T ss_pred HHhcCcEEEEEecCHHHHH
Confidence 224778999999876554
No 284
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.24 E-value=0.0015 Score=65.86 Aligned_cols=131 Identities=24% Similarity=0.212 Sum_probs=75.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCc--cE---------------EEEEE--EcCc----------------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDF--DL---------------VIWVK--VSRD---------------- 215 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f--~~---------------~~wv~--v~~~---------------- 215 (885)
..+..++|+|..|+|||||++.+..-..+..+.. +. +.+|- ....
T Consensus 28 ~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n 107 (235)
T COG1122 28 EKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLEN 107 (235)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccCcHHHHHhhchhh
Confidence 5678999999999999999999977654322110 00 11111 0000
Q ss_pred --c---cHHHHHHHHHHHcCCCcc----ccCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccc-cCC
Q 045686 216 --A---NLEKIQESILRRFEIPDQ----MWIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDD-SSQ 284 (885)
Q Consensus 216 --~---~~~~~~~~i~~~l~~~~~----~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~-~~~ 284 (885)
. .+.+...+.++.+++... ...-+..+...-.+...|.-++-++|||+.....|........ .+.. ...
T Consensus 108 ~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~ 187 (235)
T COG1122 108 LGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEE 187 (235)
T ss_pred cCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 0 122333445555555321 1122334445556777888889999999999887765432211 1111 233
Q ss_pred CCCEEEEEcCChhHHhh
Q 045686 285 TGSKIVFTTRSEEVCGE 301 (885)
Q Consensus 285 ~gs~IivTTR~~~v~~~ 301 (885)
.|.+||+.|++.+....
T Consensus 188 ~~~tii~~tHd~~~~~~ 204 (235)
T COG1122 188 GGKTIIIVTHDLELVLE 204 (235)
T ss_pred CCCeEEEEeCcHHHHHh
Confidence 36789999988765544
No 285
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=97.24 E-value=0.0015 Score=67.97 Aligned_cols=129 Identities=19% Similarity=0.204 Sum_probs=76.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--cc---------------------------EEEEEEEcCcc-----
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FD---------------------------LVIWVKVSRDA----- 216 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~---------------------------~~~wv~v~~~~----- 216 (885)
.++.+++|+|+.|+|||||++.++.......+. |+ .+.+ +.+.+
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--v~q~~~l~~~ 106 (257)
T PRK10619 29 NAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTM--VFQHFNLWSH 106 (257)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccchHHHHHhhceEE--EecCcccCCC
Confidence 578899999999999999999999876432121 11 1111 11111
Q ss_pred -cHH-------------------HHHHHHHHHcCCCcc--c---cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccc
Q 045686 217 -NLE-------------------KIQESILRRFEIPDQ--M---WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLS 271 (885)
Q Consensus 217 -~~~-------------------~~~~~i~~~l~~~~~--~---~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~ 271 (885)
++. ....++++.+++... . ..-+..+...-.+.+.+..++-+++||+.....|..
T Consensus 107 ~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~ 186 (257)
T PRK10619 107 MTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPE 186 (257)
T ss_pred CcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 111 112345566665431 0 011223344455778888888999999998887765
Q ss_pred cccccc-cccccCCCCCEEEEEcCChhHHhh
Q 045686 272 KVGVSD-LLDDSSQTGSKIVFTTRSEEVCGE 301 (885)
Q Consensus 272 ~~~~~~-~l~~~~~~gs~IivTTR~~~v~~~ 301 (885)
...... .+......|..||++|++.+.+..
T Consensus 187 ~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~ 217 (257)
T PRK10619 187 LVGEVLRIMQQLAEEGKTMVVVTHEMGFARH 217 (257)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 432211 111122347899999999876554
No 286
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.23 E-value=0.0018 Score=66.77 Aligned_cols=132 Identities=19% Similarity=0.200 Sum_probs=73.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--cc-----------------EEEEEEEcC----cccHH--------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FD-----------------LVIWVKVSR----DANLE-------- 219 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~-----------------~~~wv~v~~----~~~~~-------- 219 (885)
.++.+++|+|+.|+|||||++.++....+..+. ++ .+.++.-.. ..++.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~ 104 (241)
T cd03256 25 NPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRL 104 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccccCcHHHHHHhhhc
Confidence 567899999999999999999998765332111 10 122221000 00110
Q ss_pred ------------------HHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc
Q 045686 220 ------------------KIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD 277 (885)
Q Consensus 220 ------------------~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~ 277 (885)
....++++.+++.... ..-+..+...-.+.+.+...+-+++||+.....|........
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~ 184 (241)
T cd03256 105 GRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVM 184 (241)
T ss_pred ccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHH
Confidence 1122344555543210 011223444445677778888999999998877654332111
Q ss_pred -ccccc-CCCCCEEEEEcCChhHHhhh
Q 045686 278 -LLDDS-SQTGSKIVFTTRSEEVCGEM 302 (885)
Q Consensus 278 -~l~~~-~~~gs~IivTTR~~~v~~~~ 302 (885)
.+... ...|..||++|++.+.+...
T Consensus 185 ~~l~~~~~~~~~tii~~tH~~~~~~~~ 211 (241)
T cd03256 185 DLLKRINREEGITVIVSLHQVDLAREY 211 (241)
T ss_pred HHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 11112 22377899999998765543
No 287
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.23 E-value=0.0016 Score=66.49 Aligned_cols=66 Identities=12% Similarity=0.168 Sum_probs=41.2
Q ss_pred hHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCCCCCEEEEEcCChhHHhhhcccceeec
Q 045686 242 DGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQTGSKIVFTTRSEEVCGEMGARRRFRV 310 (885)
Q Consensus 242 ~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~gs~IivTTR~~~v~~~~~~~~~~~l 310 (885)
+...-.+.+.+..++-+++||+.....|........ .+... ..|..||++|++.+.... ..+.+.+
T Consensus 144 ~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~-~~~~tii~~sh~~~~~~~--~d~i~~l 210 (229)
T cd03254 144 ERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKL-MKGRTSIIIAHRLSTIKN--ADKILVL 210 (229)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHh-cCCCEEEEEecCHHHHhh--CCEEEEE
Confidence 344445677788889999999998877654331111 11112 247789999999876643 3444444
No 288
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.23 E-value=0.001 Score=67.45 Aligned_cols=133 Identities=24% Similarity=0.287 Sum_probs=81.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCC-----------------------------CccEEEEEEEcCc------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGH-----------------------------DFDLVIWVKVSRD------ 215 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~-----------------------------~f~~~~wv~v~~~------ 215 (885)
..+.+.+|+|.+|.|||||.+.+..-.++..+ +|..----+|.++
T Consensus 30 ~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLe 109 (339)
T COG1135 30 PKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLE 109 (339)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccchHHhhhhhhHh
Confidence 67899999999999999999999765543211 1110000011110
Q ss_pred ------ccHHHHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCcccccccccccc-ccc-cC
Q 045686 216 ------ANLEKIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSDL-LDD-SS 283 (885)
Q Consensus 216 ------~~~~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~~-l~~-~~ 283 (885)
.....-..++++..|++... ..-+..+...-.+.++|...+-+|+.|++.+..|...-...+. +.. ..
T Consensus 110 iag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~ 189 (339)
T COG1135 110 LAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINR 189 (339)
T ss_pred hcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHH
Confidence 01222344556666665421 0123344455568899999999999999999888765422221 111 34
Q ss_pred CCCCEEEEEcCChhHHhhhc
Q 045686 284 QTGSKIVFTTRSEEVCGEMG 303 (885)
Q Consensus 284 ~~gs~IivTTR~~~v~~~~~ 303 (885)
..|-+|++.|+..+|.....
T Consensus 190 ~lglTIvlITHEm~Vvk~ic 209 (339)
T COG1135 190 ELGLTIVLITHEMEVVKRIC 209 (339)
T ss_pred HcCCEEEEEechHHHHHHHh
Confidence 55899999999999876543
No 289
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.23 E-value=0.00022 Score=67.28 Aligned_cols=107 Identities=24% Similarity=0.332 Sum_probs=69.0
Q ss_pred CcccEEecCCCCCCCcCchhhhcccccceeeccCCcccccChhhhc-cccccEeecCCcccccccCC-cccccCccccee
Q 045686 563 DALEVLDLSYNLDLNQLPEEIGRLKNLHHLNLSNTSIGCLPTAIKR-LIKLKVLLLDGIQCHLSIPE-GVISSLSSLQVF 640 (885)
Q Consensus 563 ~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~Ls~~~i~~lp~~i~~-L~~L~~L~l~~~~~l~~lp~-~~i~~L~~L~~L 640 (885)
...-.+||++| .+..++. +..++.|.+|.+++|+|..+-..+.. +++|+.|.+.+|. +..+.+ .-+..+++|++|
T Consensus 42 d~~d~iDLtdN-dl~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 42 DQFDAIDLTDN-DLRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASCPKLEYL 118 (233)
T ss_pred cccceeccccc-chhhccc-CCCccccceEEecCCcceeeccchhhhccccceEEecCcc-hhhhhhcchhccCCcccee
Confidence 34567778877 6666554 56677788888888888777666654 4678888888775 444321 115677788888
Q ss_pred cccccccccccCcccccccchhhhcCccCCcceeEEEe
Q 045686 641 SCFSTELVELIDPLFNETAILDELNCLEHLNDLSLTLF 678 (885)
Q Consensus 641 ~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~L~l~~~ 678 (885)
.+-+|..... ......-+..+++|+.|++...
T Consensus 119 tll~Npv~~k------~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 119 TLLGNPVEHK------KNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred eecCCchhcc------cCceeEEEEecCcceEeehhhh
Confidence 7777765532 2223344556677777776544
No 290
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=97.22 E-value=0.002 Score=66.45 Aligned_cols=130 Identities=15% Similarity=0.180 Sum_probs=75.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh--ccCCCC--c--------------c-EEEEEEEcCcc------cHH------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKF--RDTGHD--F--------------D-LVIWVKVSRDA------NLE------ 219 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~--~~~~~~--f--------------~-~~~wv~v~~~~------~~~------ 219 (885)
.++.+++|+|+.|+|||||++.++... .+..+. + . .+.++ .+.+ +..
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v--~q~~~~~~~~t~~~~~~~~ 101 (243)
T TIGR01978 24 KKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLA--FQYPEEIPGVSNLEFLRSA 101 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEee--eccccccCCcCHHHHHHHH
Confidence 567899999999999999999999863 211110 0 0 12222 1211 010
Q ss_pred -------------------HHHHHHHHHcCCCcc---c-c-C-CCChhHHHHHHHHHhcCCCeEEEEecCCCcccccccc
Q 045686 220 -------------------KIQESILRRFEIPDQ---M-W-I-GKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVG 274 (885)
Q Consensus 220 -------------------~~~~~i~~~l~~~~~---~-~-~-~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~ 274 (885)
....++++.+++... . . . -+..+...-.+.+.+..++-+++||+.....|.....
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~ 181 (243)
T TIGR01978 102 LNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALK 181 (243)
T ss_pred HHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHH
Confidence 112344555565421 1 1 1 1223344445777888889999999998877654331
Q ss_pred ccc-cccccCCCCCEEEEEcCChhHHhhh
Q 045686 275 VSD-LLDDSSQTGSKIVFTTRSEEVCGEM 302 (885)
Q Consensus 275 ~~~-~l~~~~~~gs~IivTTR~~~v~~~~ 302 (885)
... .+......|..||++|++.+.....
T Consensus 182 ~l~~~l~~~~~~~~tvi~vsH~~~~~~~~ 210 (243)
T TIGR01978 182 IVAEGINRLREPDRSFLIITHYQRLLNYI 210 (243)
T ss_pred HHHHHHHHHHHCCcEEEEEEecHHHHHhh
Confidence 111 1111223478899999998776543
No 291
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=97.22 E-value=0.0015 Score=70.27 Aligned_cols=130 Identities=21% Similarity=0.240 Sum_probs=78.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--cc-----------------EEEEEEEcCcc------cH-------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FD-----------------LVIWVKVSRDA------NL------- 218 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~-----------------~~~wv~v~~~~------~~------- 218 (885)
.++.+++|+|++|+|||||++.++.-.++..+. ++ .+.++. +.+ ++
T Consensus 29 ~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~--Q~~~l~~~~tv~eni~~~ 106 (343)
T TIGR02314 29 PAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIF--QHFNLLSSRTVFGNVALP 106 (343)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEE--CCccccccCcHHHHHHHH
Confidence 567899999999999999999998876542111 00 122221 111 11
Q ss_pred -----------HHHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-ccccc
Q 045686 219 -----------EKIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDS 282 (885)
Q Consensus 219 -----------~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~ 282 (885)
.+...++++.+++.... ..-+..+...-.+.+.+..++-++++|+..+..|........ .+...
T Consensus 107 ~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l 186 (343)
T TIGR02314 107 LELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEI 186 (343)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 11123456666654311 011233444556788888999999999999887765432211 11112
Q ss_pred C-CCCCEEEEEcCChhHHhhh
Q 045686 283 S-QTGSKIVFTTRSEEVCGEM 302 (885)
Q Consensus 283 ~-~~gs~IivTTR~~~v~~~~ 302 (885)
. ..|..||++|++.+++..+
T Consensus 187 ~~~~g~tiiliTH~~~~v~~~ 207 (343)
T TIGR02314 187 NRRLGLTILLITHEMDVVKRI 207 (343)
T ss_pred HHhcCCEEEEEeCCHHHHHHh
Confidence 2 2378999999998877654
No 292
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=97.22 E-value=0.0021 Score=71.65 Aligned_cols=131 Identities=13% Similarity=0.123 Sum_probs=75.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--ccEE-EEEEE----cCcccHH------------------HHHHHH
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FDLV-IWVKV----SRDANLE------------------KIQESI 225 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~~~-~wv~v----~~~~~~~------------------~~~~~i 225 (885)
..+.+++|+|+.|+|||||++.++....+..+. ++.. ..+.. ....++. +....+
T Consensus 48 ~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~el 127 (549)
T PRK13545 48 PEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEI 127 (549)
T ss_pred eCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeeeEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHH
Confidence 567899999999999999999999876432221 1110 01110 0111111 112234
Q ss_pred HHHcCCCccc---c-CCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCCCCCEEEEEcCChhHHh
Q 045686 226 LRRFEIPDQM---W-IGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQTGSKIVFTTRSEEVCG 300 (885)
Q Consensus 226 ~~~l~~~~~~---~-~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~gs~IivTTR~~~v~~ 300 (885)
++.+++.... . .-+..+...-.+.+.+...+-+++||++.+..|........ .+......|..||++|++.+.+.
T Consensus 128 Le~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~ 207 (549)
T PRK13545 128 IEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVK 207 (549)
T ss_pred HHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHH
Confidence 5555553210 0 11223444445778888899999999998887765321111 11112335788999999977654
Q ss_pred h
Q 045686 301 E 301 (885)
Q Consensus 301 ~ 301 (885)
.
T Consensus 208 ~ 208 (549)
T PRK13545 208 S 208 (549)
T ss_pred H
Confidence 4
No 293
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=97.22 E-value=0.00095 Score=68.05 Aligned_cols=129 Identities=19% Similarity=0.187 Sum_probs=73.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--ccE---------EEEEEEcCc------ccHHH-------------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FDL---------VIWVKVSRD------ANLEK------------- 220 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~~---------~~wv~v~~~------~~~~~------------- 220 (885)
.++.+++|+|+.|+|||||++.++....+..+. ++. ..++ .+. .++.+
T Consensus 9 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v--~q~~~l~~~~tv~e~l~~~~~~~~~~~ 86 (230)
T TIGR01184 9 QQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVV--FQNYSLLPWLTVRENIALAVDRVLPDL 86 (230)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEE--ecCcccCCCCCHHHHHHHHHHhcccCC
Confidence 457899999999999999999998876432221 110 1121 111 11111
Q ss_pred -------HHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-ccccc-CCCCC
Q 045686 221 -------IQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDS-SQTGS 287 (885)
Q Consensus 221 -------~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~-~~~gs 287 (885)
...++++.+++.... ..-+..+...-.+.+.+..++-+++||+.....|........ .+... ...|.
T Consensus 87 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~ 166 (230)
T TIGR01184 87 SKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRV 166 (230)
T ss_pred CHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCC
Confidence 123345555553210 011223344445777788888999999998877754432211 11111 22377
Q ss_pred EEEEEcCChhHHhh
Q 045686 288 KIVFTTRSEEVCGE 301 (885)
Q Consensus 288 ~IivTTR~~~v~~~ 301 (885)
.||++|++.+....
T Consensus 167 tii~~sH~~~~~~~ 180 (230)
T TIGR01184 167 TVLMVTHDVDEALL 180 (230)
T ss_pred EEEEEeCCHHHHHH
Confidence 89999999876544
No 294
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=97.21 E-value=0.0025 Score=68.65 Aligned_cols=130 Identities=18% Similarity=0.262 Sum_probs=76.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhcc----CCC--Ccc------------------EEEEEEEcCcc--------cH
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRD----TGH--DFD------------------LVIWVKVSRDA--------NL 218 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~----~~~--~f~------------------~~~wv~v~~~~--------~~ 218 (885)
..+.+++|+|.+|+|||||++.+..-... ..+ .|+ .+.+|. +++ ++
T Consensus 31 ~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~--Q~~~~~l~p~~tv 108 (330)
T PRK15093 31 TEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIF--QEPQSCLDPSERV 108 (330)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEe--cCcchhcCccccH
Confidence 56789999999999999999999886531 111 011 122222 111 00
Q ss_pred ------------------------HHHHHHHHHHcCCCccc-------cCCCChhHHHHHHHHHhcCCCeEEEEecCCCc
Q 045686 219 ------------------------EKIQESILRRFEIPDQM-------WIGKDEDGRANEILSNLRGKKFVLLLDDVWER 267 (885)
Q Consensus 219 ------------------------~~~~~~i~~~l~~~~~~-------~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~ 267 (885)
.....++++.+++.... ..-+..+...-.+...+..++-+||+|+..+.
T Consensus 109 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~ 188 (330)
T PRK15093 109 GRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNA 188 (330)
T ss_pred HHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCc
Confidence 01223455666664210 01122344444577888889999999999887
Q ss_pred cccccccccc-ccccc-CCCCCEEEEEcCChhHHhhh
Q 045686 268 LDLSKVGVSD-LLDDS-SQTGSKIVFTTRSEEVCGEM 302 (885)
Q Consensus 268 ~~~~~~~~~~-~l~~~-~~~gs~IivTTR~~~v~~~~ 302 (885)
.|........ .+... ...|..||++|++.+++..+
T Consensus 189 LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~ 225 (330)
T PRK15093 189 MEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQW 225 (330)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHh
Confidence 7654321111 11111 22478999999998877654
No 295
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=97.21 E-value=0.0021 Score=65.63 Aligned_cols=131 Identities=18% Similarity=0.146 Sum_probs=74.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhcc----CCCC--c------------cEEEEEEEcC------cccHH-------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRD----TGHD--F------------DLVIWVKVSR------DANLE------- 219 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~----~~~~--f------------~~~~wv~v~~------~~~~~------- 219 (885)
.++.+++|+|+.|+|||||++.++....+ ..+. + ..+.++.-.. ..++.
T Consensus 10 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~ 89 (230)
T TIGR02770 10 KRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTMGNHAIETL 89 (230)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccCHHHHHHHHH
Confidence 46789999999999999999999987643 1121 1 1122221110 01110
Q ss_pred -----------HHHHHHHHHcCCCc-----cc--cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-ccc
Q 045686 220 -----------KIQESILRRFEIPD-----QM--WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLD 280 (885)
Q Consensus 220 -----------~~~~~i~~~l~~~~-----~~--~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~ 280 (885)
....++++.+++.. .. ..-+..+...-.+.+.+..++-+++||++.+..|........ .+.
T Consensus 90 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~ 169 (230)
T TIGR02770 90 RSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLR 169 (230)
T ss_pred HHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHH
Confidence 11234455555541 00 011223444455777788888899999998877755432111 111
Q ss_pred ccCC-CCCEEEEEcCChhHHhh
Q 045686 281 DSSQ-TGSKIVFTTRSEEVCGE 301 (885)
Q Consensus 281 ~~~~-~gs~IivTTR~~~v~~~ 301 (885)
.... .|..||++|++.+....
T Consensus 170 ~~~~~~~~tiii~sH~~~~~~~ 191 (230)
T TIGR02770 170 ELRQLFGTGILLITHDLGVVAR 191 (230)
T ss_pred HHHHhcCCEEEEEeCCHHHHHH
Confidence 1222 36789999999765543
No 296
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.21 E-value=0.0013 Score=65.22 Aligned_cols=127 Identities=13% Similarity=0.237 Sum_probs=71.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--ccE----------EEEEEEcCcc------cHH-------------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FDL----------VIWVKVSRDA------NLE------------- 219 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~~----------~~wv~v~~~~------~~~------------- 219 (885)
.++.+++|+|.+|+|||||++.++....+..+. ++. +.++ .+.. ++.
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~--~~~~~~~~~~tv~~~l~~~~~~~~~~ 101 (195)
T PRK13541 24 LPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYI--GHNLGLKLEMTVFENLKFWSEIYNSA 101 (195)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEec--cCCcCCCccCCHHHHHHHHHHhcccH
Confidence 467899999999999999999999875432221 110 1121 1111 111
Q ss_pred HHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCCCCCEEEEEcC
Q 045686 220 KIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQTGSKIVFTTR 294 (885)
Q Consensus 220 ~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~gs~IivTTR 294 (885)
.....+++.+++.... ..-+..+...-.+.+.+..++-++++|+.....|........ .+......|..||++|+
T Consensus 102 ~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh 181 (195)
T PRK13541 102 ETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSH 181 (195)
T ss_pred HHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 1123334444543210 011223344445677778888999999998877654432111 11112235778999999
Q ss_pred ChhHH
Q 045686 295 SEEVC 299 (885)
Q Consensus 295 ~~~v~ 299 (885)
+.+..
T Consensus 182 ~~~~i 186 (195)
T PRK13541 182 LESSI 186 (195)
T ss_pred Ccccc
Confidence 87543
No 297
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=97.21 E-value=0.0015 Score=67.81 Aligned_cols=61 Identities=15% Similarity=0.176 Sum_probs=39.3
Q ss_pred hhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCC-CCCEEEEEcCChhHHhh
Q 045686 241 EDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQ-TGSKIVFTTRSEEVCGE 301 (885)
Q Consensus 241 ~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~-~gs~IivTTR~~~v~~~ 301 (885)
.+...-.+.+.+..++-++++|++.+..|........ .+..... .|..||++|++.+.+..
T Consensus 157 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~ 219 (255)
T PRK11300 157 GQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMG 219 (255)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHH
Confidence 3344445777888899999999998887754332111 1111222 37899999999876544
No 298
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.21 E-value=0.0018 Score=67.77 Aligned_cols=138 Identities=16% Similarity=0.118 Sum_probs=77.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--cc--------------EEEEEEEcCc--c---cH-----------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FD--------------LVIWVKVSRD--A---NL----------- 218 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~--------------~~~wv~v~~~--~---~~----------- 218 (885)
.++.+++|+|+.|+|||||++.++....+..+. ++ .+.|+.-... + .+
T Consensus 33 ~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~ 112 (269)
T PRK13648 33 PKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH 112 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhc
Confidence 578899999999999999999998875432110 10 1222221100 0 00
Q ss_pred -------HHHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-ccccc-CCC
Q 045686 219 -------EKIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDS-SQT 285 (885)
Q Consensus 219 -------~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~-~~~ 285 (885)
......+++.+++.... ..-+..+...-.+.+.+..++-+++||++....|........ .+... ...
T Consensus 113 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~ 192 (269)
T PRK13648 113 AVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEH 192 (269)
T ss_pred CCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc
Confidence 01223445555553210 011223444445777888889999999998887765432111 11112 234
Q ss_pred CCEEEEEcCChhHHhhhcccceeec
Q 045686 286 GSKIVFTTRSEEVCGEMGARRRFRV 310 (885)
Q Consensus 286 gs~IivTTR~~~v~~~~~~~~~~~l 310 (885)
|..||++|++.+.+.. ..+.+.+
T Consensus 193 ~~tiiivtH~~~~~~~--~d~i~~l 215 (269)
T PRK13648 193 NITIISITHDLSEAME--ADHVIVM 215 (269)
T ss_pred CCEEEEEecCchHHhc--CCEEEEE
Confidence 7889999998766542 3444443
No 299
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.21 E-value=0.003 Score=67.46 Aligned_cols=95 Identities=12% Similarity=0.103 Sum_probs=57.2
Q ss_pred CCCeEEEEecCCCccc--cccccccccccccCCCCCEEEEEcCChh-HHhh-hcccceeeccCCChHHHHHHHHHHhcCc
Q 045686 254 GKKFVLLLDDVWERLD--LSKVGVSDLLDDSSQTGSKIVFTTRSEE-VCGE-MGARRRFRVECLSPEAALDLFRYKVGED 329 (885)
Q Consensus 254 ~k~~LlVLDdv~~~~~--~~~~~~~~~l~~~~~~gs~IivTTR~~~-v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~ 329 (885)
+++-++|+|+++.... ...+...+- ....++.+|+||.+.+ +... .+-...+.+.+++.+++.+.+.......
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LE---EPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~~ 181 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLE---EPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPES 181 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHh---CCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhcccC
Confidence 4455667899976432 122211111 2334677777777653 3322 2223678999999999999997764211
Q ss_pred ccCCccchHHHHHHHHHHhCCchhHHHHH
Q 045686 330 VYSSHFEISNLAQTVVEECRGLPLALVTI 358 (885)
Q Consensus 330 ~~~~~~~~~~~~~~I~~~c~GlPLai~~~ 358 (885)
. .+.+..++..++|.|..+..+
T Consensus 182 ---~----~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 182 ---D----ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred ---C----hHHHHHHHHHcCCCHHHHHHH
Confidence 1 123567889999999765543
No 300
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.21 E-value=0.002 Score=68.57 Aligned_cols=104 Identities=14% Similarity=0.137 Sum_probs=65.8
Q ss_pred HHHHHHHhhc-CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccE-EEEEEEcCc-ccHHHHHHHHHHHcCCCccccC
Q 045686 161 ISEVWRCIED-HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDL-VIWVKVSRD-ANLEKIQESILRRFEIPDQMWI 237 (885)
Q Consensus 161 ~~~l~~~L~~-~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~-~~wv~v~~~-~~~~~~~~~i~~~l~~~~~~~~ 237 (885)
..++++.+.- +.+.-+.|+|.+|+|||||++.+++.... .+-+. ++|+.+.+. .++.++.+.+...+..+..+..
T Consensus 120 ~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~--~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~ 197 (380)
T PRK12608 120 SMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAA--NHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRP 197 (380)
T ss_pred hHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHh--cCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCC
Confidence 3446666643 56677899999999999999999887742 33343 467677654 4678888888877765431101
Q ss_pred CCC---hhHHHHHHHHHh--cCCCeEEEEecCCC
Q 045686 238 GKD---EDGRANEILSNL--RGKKFVLLLDDVWE 266 (885)
Q Consensus 238 ~~~---~~~~~~~l~~~l--~~k~~LlVLDdv~~ 266 (885)
... .......+.+.+ .++.++||+|++..
T Consensus 198 ~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr 231 (380)
T PRK12608 198 PDEHIRVAELVLERAKRLVEQGKDVVILLDSLTR 231 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHH
Confidence 100 111111222333 47899999999953
No 301
>CHL00176 ftsH cell division protein; Validated
Probab=97.20 E-value=0.003 Score=73.34 Aligned_cols=173 Identities=16% Similarity=0.216 Sum_probs=95.2
Q ss_pred CCccchhHHHHHHHHHh---hc---------CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHH
Q 045686 152 GKTVGLDSIISEVWRCI---ED---------HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLE 219 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L---~~---------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 219 (885)
.+++|.++.++++.+.+ .. ...+-+.++|++|+|||++|+.+++... .. ++.++. .
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~---~p-----~i~is~----s 250 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAE---VP-----FFSISG----S 250 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC---CC-----eeeccH----H
Confidence 45778877666655544 22 1235688999999999999999988652 22 222221 1
Q ss_pred HHHHHHHHHcCCCccccCCCChhHHHHHHHHHhcCCCeEEEEecCCCccc------------ccccccccc--ccc-cCC
Q 045686 220 KIQESILRRFEIPDQMWIGKDEDGRANEILSNLRGKKFVLLLDDVWERLD------------LSKVGVSDL--LDD-SSQ 284 (885)
Q Consensus 220 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~------------~~~~~~~~~--l~~-~~~ 284 (885)
.+.. .. .+.........+.......+.+|++||++.... .......+. +.. ...
T Consensus 251 ~f~~----~~-------~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~ 319 (638)
T CHL00176 251 EFVE----MF-------VGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGN 319 (638)
T ss_pred HHHH----Hh-------hhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCC
Confidence 1110 00 011122223334445566789999999964310 000000000 000 123
Q ss_pred CCCEEEEEcCChhHHhh-h----cccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCc
Q 045686 285 TGSKIVFTTRSEEVCGE-M----GARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGL 351 (885)
Q Consensus 285 ~gs~IivTTR~~~v~~~-~----~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~Gl 351 (885)
.+..||.||...+.... + .-...+.++..+.++-.++++.++....... ......+++.+.|.
T Consensus 320 ~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~----d~~l~~lA~~t~G~ 387 (638)
T CHL00176 320 KGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSP----DVSLELIARRTPGF 387 (638)
T ss_pred CCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccch----hHHHHHHHhcCCCC
Confidence 45567777766443221 1 2335788899999999999988875432211 12356778888773
No 302
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=97.20 E-value=0.0018 Score=66.76 Aligned_cols=129 Identities=16% Similarity=0.207 Sum_probs=72.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--cc-----------------EEEEEEEcCcc------cH-------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FD-----------------LVIWVKVSRDA------NL------- 218 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~-----------------~~~wv~v~~~~------~~------- 218 (885)
.++.+++|+|+.|+|||||++.++....+..+. |+ .+.++. +.. ++
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~--q~~~~~~~~tv~~~l~~~ 103 (243)
T TIGR02315 26 NPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIF--QHYNLIERLTVLENVLHG 103 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEc--CCCcccccccHHHHHhhc
Confidence 567899999999999999999998765322111 00 112221 110 10
Q ss_pred -------------------HHHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccc
Q 045686 219 -------------------EKIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGV 275 (885)
Q Consensus 219 -------------------~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~ 275 (885)
..-..++++.+++.... ..-+..+...-.+.+.+..++-+++||+.....|......
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~ 183 (243)
T TIGR02315 104 RLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQ 183 (243)
T ss_pred ccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 01123344555543210 0112233444456777778888999999988776543311
Q ss_pred cc-ccccc-CCCCCEEEEEcCChhHHhh
Q 045686 276 SD-LLDDS-SQTGSKIVFTTRSEEVCGE 301 (885)
Q Consensus 276 ~~-~l~~~-~~~gs~IivTTR~~~v~~~ 301 (885)
.. .+... ...|..||++|++.+....
T Consensus 184 l~~~l~~~~~~~~~tiii~tH~~~~~~~ 211 (243)
T TIGR02315 184 VMDYLKRINKEDGITVIINLHQVDLAKK 211 (243)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 11 11111 2236789999999876543
No 303
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.20 E-value=0.00055 Score=71.98 Aligned_cols=128 Identities=12% Similarity=0.095 Sum_probs=75.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--ccE--------------EEEEEEcCcc-------c----------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FDL--------------VIWVKVSRDA-------N---------- 217 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~~--------------~~wv~v~~~~-------~---------- 217 (885)
.++.+++|+|.+|+|||||++.++.-..+..+. |+. +.++ .+.+ +
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v--~q~~~~~~~~~tv~eni~~~~~ 108 (279)
T PRK13650 31 KQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMV--FQNPDNQFVGATVEDDVAFGLE 108 (279)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEE--EcChHHhcccccHHHHHHhhHH
Confidence 578999999999999999999999875432221 111 1111 1110 0
Q ss_pred -----H---HHHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCcccccccccccc-ccccC-
Q 045686 218 -----L---EKIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSDL-LDDSS- 283 (885)
Q Consensus 218 -----~---~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~~-l~~~~- 283 (885)
. .....++++.+++.... ..-+..+...-.+.+.+..++-+++||+.....|......... +....
T Consensus 109 ~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~ 188 (279)
T PRK13650 109 NKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRD 188 (279)
T ss_pred hCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHH
Confidence 0 11233445555553210 0112234444557788888999999999998877654322211 11122
Q ss_pred CCCCEEEEEcCChhHHh
Q 045686 284 QTGSKIVFTTRSEEVCG 300 (885)
Q Consensus 284 ~~gs~IivTTR~~~v~~ 300 (885)
..|..||++|++.+...
T Consensus 189 ~~g~tilivtH~~~~~~ 205 (279)
T PRK13650 189 DYQMTVISITHDLDEVA 205 (279)
T ss_pred hcCCEEEEEecCHHHHH
Confidence 24789999999987664
No 304
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=97.20 E-value=0.0016 Score=70.54 Aligned_cols=132 Identities=21% Similarity=0.225 Sum_probs=76.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--c-----------------cEEEEEEEcC----cccH---------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--F-----------------DLVIWVKVSR----DANL--------- 218 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f-----------------~~~~wv~v~~----~~~~--------- 218 (885)
.++.+++|+|+.|+|||||++.++....+..+. | ..+.++.-.. ..++
T Consensus 29 ~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~ 108 (343)
T PRK11153 29 PAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLE 108 (343)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHH
Confidence 567899999999999999999998875432111 1 1122221000 0011
Q ss_pred ---------HHHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-ccccc-C
Q 045686 219 ---------EKIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDS-S 283 (885)
Q Consensus 219 ---------~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~-~ 283 (885)
.....++++.+++.... ..-+..+...-.+.+.+..++-+++||+.....|........ .+... .
T Consensus 109 ~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~ 188 (343)
T PRK11153 109 LAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINR 188 (343)
T ss_pred HcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 11233456666654311 011223444456778888899999999998877754332111 11112 2
Q ss_pred CCCCEEEEEcCChhHHhhh
Q 045686 284 QTGSKIVFTTRSEEVCGEM 302 (885)
Q Consensus 284 ~~gs~IivTTR~~~v~~~~ 302 (885)
..|..||++|++.+.+..+
T Consensus 189 ~~g~tiilvtH~~~~i~~~ 207 (343)
T PRK11153 189 ELGLTIVLITHEMDVVKRI 207 (343)
T ss_pred hcCCEEEEEeCCHHHHHHh
Confidence 2478999999998766543
No 305
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.20 E-value=0.0028 Score=67.01 Aligned_cols=129 Identities=25% Similarity=0.220 Sum_probs=76.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--cc------------------EEEEEEEcCcc-------c------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FD------------------LVIWVKVSRDA-------N------ 217 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~------------------~~~wv~v~~~~-------~------ 217 (885)
.++.+++|+|+.|+|||||++.++....+..+. ++ .+.++ .+.+ +
T Consensus 30 ~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v--~q~~~~~l~~~tv~~~l~ 107 (288)
T PRK13643 30 KKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVV--FQFPESQLFEETVLKDVA 107 (288)
T ss_pred cCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHhhEEEE--ecCcchhcccchHHHHHH
Confidence 567899999999999999999999775432221 11 11121 1211 0
Q ss_pred ------------HHHHHHHHHHHcCCCcc--c---cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cc
Q 045686 218 ------------LEKIQESILRRFEIPDQ--M---WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LL 279 (885)
Q Consensus 218 ------------~~~~~~~i~~~l~~~~~--~---~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l 279 (885)
......++++.+++... . ..-+..+...-.+.+.+..++-+++||+.....|........ .+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l 187 (288)
T PRK13643 108 FGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLF 187 (288)
T ss_pred hHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHH
Confidence 01123344555565311 1 011234444556778888889999999998887765432211 11
Q ss_pred cccCCCCCEEEEEcCChhHHhh
Q 045686 280 DDSSQTGSKIVFTTRSEEVCGE 301 (885)
Q Consensus 280 ~~~~~~gs~IivTTR~~~v~~~ 301 (885)
......|..||++|++.+.+..
T Consensus 188 ~~l~~~g~til~vtHd~~~~~~ 209 (288)
T PRK13643 188 ESIHQSGQTVVLVTHLMDDVAD 209 (288)
T ss_pred HHHHHCCCEEEEEecCHHHHHH
Confidence 1122347899999999876544
No 306
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=97.19 E-value=0.0019 Score=67.25 Aligned_cols=131 Identities=21% Similarity=0.200 Sum_probs=76.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--cc-----------------------EEEEEEEcCc------cc--
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FD-----------------------LVIWVKVSRD------AN-- 217 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~-----------------------~~~wv~v~~~------~~-- 217 (885)
.++.+++|+|+.|+|||||++.++....+..+. ++ .+.++.-... ..
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~ 109 (258)
T PRK11701 30 YPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAG 109 (258)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeCcccccCccccHH
Confidence 577899999999999999999999875432121 00 1222221110 00
Q ss_pred --H---------------HHHHHHHHHHcCCCcc---c-c-CCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccc
Q 045686 218 --L---------------EKIQESILRRFEIPDQ---M-W-IGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGV 275 (885)
Q Consensus 218 --~---------------~~~~~~i~~~l~~~~~---~-~-~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~ 275 (885)
+ .....++++.++.... . . .-+..+...-.+.+.+..++-++++|+..+..|......
T Consensus 110 ~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~ 189 (258)
T PRK11701 110 GNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQAR 189 (258)
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence 0 1112345566666321 1 0 112234444557778888999999999988776543321
Q ss_pred ccc-cccc-CCCCCEEEEEcCChhHHhh
Q 045686 276 SDL-LDDS-SQTGSKIVFTTRSEEVCGE 301 (885)
Q Consensus 276 ~~~-l~~~-~~~gs~IivTTR~~~v~~~ 301 (885)
... +... ...|..||++|++.+.+..
T Consensus 190 l~~~l~~~~~~~~~tii~isH~~~~~~~ 217 (258)
T PRK11701 190 LLDLLRGLVRELGLAVVIVTHDLAVARL 217 (258)
T ss_pred HHHHHHHHHHhcCcEEEEEeCCHHHHHH
Confidence 111 1111 2237889999999877654
No 307
>PRK08181 transposase; Validated
Probab=97.19 E-value=0.017 Score=59.63 Aligned_cols=78 Identities=17% Similarity=0.188 Sum_probs=45.8
Q ss_pred HHhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHHHcCCCccccCCCChhHHH
Q 045686 166 RCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILRRFEIPDQMWIGKDEDGRA 245 (885)
Q Consensus 166 ~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 245 (885)
+|+. ...-+.++|++|+|||.||..+++.... .. ..++|++ ..++...+.... .........
T Consensus 101 ~~~~--~~~nlll~Gp~GtGKTHLa~Aia~~a~~--~g-~~v~f~~------~~~L~~~l~~a~-------~~~~~~~~l 162 (269)
T PRK08181 101 SWLA--KGANLLLFGPPGGGKSHLAAAIGLALIE--NG-WRVLFTR------TTDLVQKLQVAR-------RELQLESAI 162 (269)
T ss_pred HHHh--cCceEEEEecCCCcHHHHHHHHHHHHHH--cC-Cceeeee------HHHHHHHHHHHH-------hCCcHHHHH
Confidence 4543 3456899999999999999999987632 22 2345554 344444443321 111222222
Q ss_pred HHHHHHhcCCCeEEEEecCCC
Q 045686 246 NEILSNLRGKKFVLLLDDVWE 266 (885)
Q Consensus 246 ~~l~~~l~~k~~LlVLDdv~~ 266 (885)
. .+ .+.-|||+||+..
T Consensus 163 ~----~l-~~~dLLIIDDlg~ 178 (269)
T PRK08181 163 A----KL-DKFDLLILDDLAY 178 (269)
T ss_pred H----HH-hcCCEEEEecccc
Confidence 2 22 2456999999964
No 308
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.19 E-value=0.0028 Score=63.89 Aligned_cols=131 Identities=21% Similarity=0.210 Sum_probs=73.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--c----------------cEEEEEEEcC----cccH----------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--F----------------DLVIWVKVSR----DANL---------- 218 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f----------------~~~~wv~v~~----~~~~---------- 218 (885)
.++.+++|+|+.|+|||||++.++....+..+. + ..+.++.-.. ..++
T Consensus 24 ~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~ 103 (213)
T cd03262 24 KKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIK 103 (213)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHH
Confidence 567899999999999999999999875432111 0 0122222100 0011
Q ss_pred ---------HHHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCC
Q 045686 219 ---------EKIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQ 284 (885)
Q Consensus 219 ---------~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~ 284 (885)
.+...++++.+++.... ..-+..+...-.+.+.+..++-+++||+.....|........ .+.....
T Consensus 104 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~ 183 (213)
T cd03262 104 VKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAE 183 (213)
T ss_pred hcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH
Confidence 01123445555553210 011223344445677778888899999998877654331111 1111223
Q ss_pred CCCEEEEEcCChhHHhh
Q 045686 285 TGSKIVFTTRSEEVCGE 301 (885)
Q Consensus 285 ~gs~IivTTR~~~v~~~ 301 (885)
.|..||++|++.+....
T Consensus 184 ~~~tvi~~sh~~~~~~~ 200 (213)
T cd03262 184 EGMTMVVVTHEMGFARE 200 (213)
T ss_pred cCCEEEEEeCCHHHHHH
Confidence 47789999998765543
No 309
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.19 E-value=0.0017 Score=65.24 Aligned_cols=129 Identities=19% Similarity=0.180 Sum_probs=74.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--cc------------EEEEEEEcCcc------cH------------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FD------------LVIWVKVSRDA------NL------------ 218 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~------------~~~wv~v~~~~------~~------------ 218 (885)
.++.+++|+|+.|+|||||.+.++....+..+. ++ .+.++. +.. ++
T Consensus 22 ~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~--q~~~~~~~~tv~enl~~~~~~~~ 99 (211)
T cd03298 22 AQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLF--QENNLFAHLTVEQNVGLGLSPGL 99 (211)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEe--cccccCCCCcHHHHHhccccccc
Confidence 567899999999999999999998876432221 11 112221 110 11
Q ss_pred ------HHHHHHHHHHcCCCccc---c-CCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-ccccc-CCCC
Q 045686 219 ------EKIQESILRRFEIPDQM---W-IGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDS-SQTG 286 (885)
Q Consensus 219 ------~~~~~~i~~~l~~~~~~---~-~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~-~~~g 286 (885)
.....++++.+++.... . .-+..+...-.+.+.+..++-++++|+.....|........ .+... ...|
T Consensus 100 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~ 179 (211)
T cd03298 100 KLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETK 179 (211)
T ss_pred CccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 11223445555543210 0 11223344445677777888999999998877654432211 11111 2347
Q ss_pred CEEEEEcCChhHHhh
Q 045686 287 SKIVFTTRSEEVCGE 301 (885)
Q Consensus 287 s~IivTTR~~~v~~~ 301 (885)
..||++|++.+....
T Consensus 180 ~tii~~sH~~~~~~~ 194 (211)
T cd03298 180 MTVLMVTHQPEDAKR 194 (211)
T ss_pred CEEEEEecCHHHHHh
Confidence 889999999876544
No 310
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.19 E-value=0.0021 Score=67.19 Aligned_cols=131 Identities=18% Similarity=0.127 Sum_probs=75.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--c------------------cEEEEEEEcC----cccHH-------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--F------------------DLVIWVKVSR----DANLE------- 219 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f------------------~~~~wv~v~~----~~~~~------- 219 (885)
..+.+++|+|+.|+|||||++.++....+..+. + ..+.++.-.. ..++.
T Consensus 48 ~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~ 127 (269)
T cd03294 48 REGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVAFGL 127 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCCcHHHHHHHHH
Confidence 567899999999999999999998876432111 1 0122221000 00111
Q ss_pred -----------HHHHHHHHHcCCCccc---c-CCCChhHHHHHHHHHhcCCCeEEEEecCCCcccccccccccc-cccc-
Q 045686 220 -----------KIQESILRRFEIPDQM---W-IGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSDL-LDDS- 282 (885)
Q Consensus 220 -----------~~~~~i~~~l~~~~~~---~-~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~~-l~~~- 282 (885)
....++++.+++.... . .-+..+...-.+.+.+..++-+++||+.....|......... +...
T Consensus 128 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~ 207 (269)
T cd03294 128 EVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQ 207 (269)
T ss_pred HhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHH
Confidence 1123455566654210 0 112234444457788888999999999988877654321111 1111
Q ss_pred CCCCCEEEEEcCChhHHhh
Q 045686 283 SQTGSKIVFTTRSEEVCGE 301 (885)
Q Consensus 283 ~~~gs~IivTTR~~~v~~~ 301 (885)
...|..||++|++.+.+..
T Consensus 208 ~~~g~tiii~tH~~~~~~~ 226 (269)
T cd03294 208 AELQKTIVFITHDLDEALR 226 (269)
T ss_pred HhcCCEEEEEeCCHHHHHH
Confidence 2237889999999865543
No 311
>PRK13409 putative ATPase RIL; Provisional
Probab=97.19 E-value=0.0012 Score=76.56 Aligned_cols=138 Identities=16% Similarity=0.202 Sum_probs=81.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCc--c-EEEEEEEcCcc------cHH-------------HHHHHHHHH
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDF--D-LVIWVKVSRDA------NLE-------------KIQESILRR 228 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f--~-~~~wv~v~~~~------~~~-------------~~~~~i~~~ 228 (885)
..+.+++|+|+.|+|||||++.++....+..+.. + .+.+ +.+.. ++. ....++++.
T Consensus 363 ~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~y--~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~ 440 (590)
T PRK13409 363 YEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISY--KPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKP 440 (590)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEEE--ecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHH
Confidence 4678999999999999999999998764322221 1 0111 12211 111 123445566
Q ss_pred cCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-ccccc-CCCCCEEEEEcCChhHHhhh
Q 045686 229 FEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDS-SQTGSKIVFTTRSEEVCGEM 302 (885)
Q Consensus 229 l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~-~~~gs~IivTTR~~~v~~~~ 302 (885)
+++.... ..-+..+...-.+.+.+..++-+++||+..+..|........ .+... ...|..||++|++.+.+..+
T Consensus 441 l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~ 520 (590)
T PRK13409 441 LQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYI 520 (590)
T ss_pred CCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence 6654210 112334455556788888999999999999887765432211 11112 22478899999998776654
Q ss_pred cccceeecc
Q 045686 303 GARRRFRVE 311 (885)
Q Consensus 303 ~~~~~~~l~ 311 (885)
. ++.+.++
T Consensus 521 a-Drvivl~ 528 (590)
T PRK13409 521 S-DRLMVFE 528 (590)
T ss_pred C-CEEEEEc
Confidence 3 3344443
No 312
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.00055 Score=64.05 Aligned_cols=123 Identities=19% Similarity=0.239 Sum_probs=73.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEE----------------cCccc-----------------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKV----------------SRDAN----------------- 217 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v----------------~~~~~----------------- 217 (885)
.....+.|.|+.|+|||||.+.++.-.++..++ +.|-.. ++...
T Consensus 26 ~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~---v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa~ENL~F~~~~ 102 (209)
T COG4133 26 NAGEALQITGPNGAGKTTLLRILAGLLRPDAGE---VYWQGEPIQNVRESYHQALLYLGHQPGIKTELTALENLHFWQRF 102 (209)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHcccCCCCCe---EEecCCCCccchhhHHHHHHHhhccccccchhhHHHHHHHHHHH
Confidence 467889999999999999999999876543221 223210 00000
Q ss_pred ----HHHHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCcccccccccc-ccccccCCCCCE
Q 045686 218 ----LEKIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVS-DLLDDSSQTGSK 288 (885)
Q Consensus 218 ----~~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~-~~l~~~~~~gs~ 288 (885)
...-..+.+..+|+..-. ..-+..+++.-.+.+..-.++-|-|||++....|....... -.+......|.-
T Consensus 103 ~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGi 182 (209)
T COG4133 103 HGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGI 182 (209)
T ss_pred hCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCE
Confidence 011122223333332210 11234555666677888889999999999887765543211 112225567889
Q ss_pred EEEEcCCh
Q 045686 289 IVFTTRSE 296 (885)
Q Consensus 289 IivTTR~~ 296 (885)
||.||+.+
T Consensus 183 VllttHq~ 190 (209)
T COG4133 183 VLLTTHQP 190 (209)
T ss_pred EEEecCCc
Confidence 99999986
No 313
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.18 E-value=0.0016 Score=64.33 Aligned_cols=114 Identities=13% Similarity=0.176 Sum_probs=59.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhhccC-CCCc--------c-EEEEEEEcCcccHHHHHHHHHHHcCCCccccCCCChh
Q 045686 173 EKVIGLYGMGGVGKTTLLKKLNNKFRDT-GHDF--------D-LVIWVKVSRDANLEKIQESILRRFEIPDQMWIGKDED 242 (885)
Q Consensus 173 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~-~~~f--------~-~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 242 (885)
.++++|+|+.|.|||||.+.+....... .+.+ + ..++...+. ..++.. +. ....
T Consensus 25 g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~-------~d~l~~--~~-------s~~~ 88 (199)
T cd03283 25 KNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRV-------SDDLRD--GI-------SYFY 88 (199)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccc-------hhcccc--cc-------ChHH
Confidence 4899999999999999999997644210 0111 0 011111110 001100 00 0011
Q ss_pred HHHHHHHHHhc----CCCeEEEEecCCCcccccccc-c-cccccccCCCCCEEEEEcCChhHHhhh
Q 045686 243 GRANEILSNLR----GKKFVLLLDDVWERLDLSKVG-V-SDLLDDSSQTGSKIVFTTRSEEVCGEM 302 (885)
Q Consensus 243 ~~~~~l~~~l~----~k~~LlVLDdv~~~~~~~~~~-~-~~~l~~~~~~gs~IivTTR~~~v~~~~ 302 (885)
....++.+.+. .++-++++|+.....|..... . ...+......|..+|++|++.+.+...
T Consensus 89 ~e~~~~~~iL~~~~~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~~tiiivTH~~~~~~~~ 154 (199)
T cd03283 89 AELRRLKEIVEKAKKGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKNTIGIISTHDLELADLL 154 (199)
T ss_pred HHHHHHHHHHHhccCCCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCCCEEEEEcCcHHHHHhh
Confidence 11123333333 378999999987665543221 1 001111234478999999998887655
No 314
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.18 E-value=0.0019 Score=66.45 Aligned_cols=129 Identities=19% Similarity=0.213 Sum_probs=74.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--cc--------------EEEEEEEcCcc------cH----------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FD--------------LVIWVKVSRDA------NL---------- 218 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~--------------~~~wv~v~~~~------~~---------- 218 (885)
.++.+++|+|+.|+|||||++.++....+..+. |+ .+.++ .+.. ++
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~--~q~~~~~~~~tv~e~l~~~~~~ 102 (242)
T cd03295 25 AKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYV--IQQIGLFPHMTVEENIALVPKL 102 (242)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEE--ccCccccCCCcHHHHHHHHHHH
Confidence 567899999999999999999998865432111 11 11111 1111 11
Q ss_pred --------HHHHHHHHHHcCCCc--c-c---cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccC
Q 045686 219 --------EKIQESILRRFEIPD--Q-M---WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSS 283 (885)
Q Consensus 219 --------~~~~~~i~~~l~~~~--~-~---~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~ 283 (885)
..-..++++.+++.. . . ..-+..+...-.+.+.+..++-+++||++.+..|........ .+....
T Consensus 103 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~ 182 (242)
T cd03295 103 LKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQ 182 (242)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHH
Confidence 112345566666652 1 0 011223334445677778888999999998877655432111 111122
Q ss_pred -CCCCEEEEEcCChhHHhh
Q 045686 284 -QTGSKIVFTTRSEEVCGE 301 (885)
Q Consensus 284 -~~gs~IivTTR~~~v~~~ 301 (885)
..|..||++|++.+....
T Consensus 183 ~~~g~tvii~sH~~~~~~~ 201 (242)
T cd03295 183 QELGKTIVFVTHDIDEAFR 201 (242)
T ss_pred HHcCCEEEEEecCHHHHHH
Confidence 237789999999875443
No 315
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.17 E-value=0.00088 Score=68.03 Aligned_cols=131 Identities=21% Similarity=0.263 Sum_probs=71.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--c---------------cEEEEEEEcC----cccHH----------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--F---------------DLVIWVKVSR----DANLE---------- 219 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f---------------~~~~wv~v~~----~~~~~---------- 219 (885)
.++.+++|+|+.|+|||||++.++....+..+. + ..+.|+.-.. ..++.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~ 103 (222)
T cd03224 24 PEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYAR 103 (222)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhc
Confidence 567899999999999999999998765432111 0 0122322110 00111
Q ss_pred ------HHHHHHHHHcC-CCcc--c--cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCCCCC
Q 045686 220 ------KIQESILRRFE-IPDQ--M--WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQTGS 287 (885)
Q Consensus 220 ------~~~~~i~~~l~-~~~~--~--~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~gs 287 (885)
.....+++.++ .... . ..-+..+...-.+.+.+..++-++++|+.....|........ .+......|.
T Consensus 104 ~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ 183 (222)
T cd03224 104 RRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGV 183 (222)
T ss_pred CchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCC
Confidence 01122333331 2110 0 011223334445667777788999999998877654331111 1111223578
Q ss_pred EEEEEcCChhHHhh
Q 045686 288 KIVFTTRSEEVCGE 301 (885)
Q Consensus 288 ~IivTTR~~~v~~~ 301 (885)
.||++|++.+....
T Consensus 184 tiii~sH~~~~~~~ 197 (222)
T cd03224 184 TILLVEQNARFALE 197 (222)
T ss_pred EEEEEeCCHHHHHH
Confidence 99999999876544
No 316
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.17 E-value=0.0026 Score=66.67 Aligned_cols=138 Identities=22% Similarity=0.215 Sum_probs=77.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--cc---------------EEEEEEEcCc--c---cH----------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FD---------------LVIWVKVSRD--A---NL---------- 218 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~---------------~~~wv~v~~~--~---~~---------- 218 (885)
.++.+++|+|++|+|||||.+.++.......+. |+ .+.++.-... + ++
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~ 105 (274)
T PRK13644 26 KKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPEN 105 (274)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHH
Confidence 567899999999999999999999875432121 11 0111111000 0 00
Q ss_pred --------HHHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCCC
Q 045686 219 --------EKIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQT 285 (885)
Q Consensus 219 --------~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~ 285 (885)
.+...++++.+++.... ..-+..+...-.+.+.+..++-+++||+.....|........ .+......
T Consensus 106 ~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~ 185 (274)
T PRK13644 106 LCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEK 185 (274)
T ss_pred cCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC
Confidence 11223344555543210 011223444445778888899999999998877654321111 11112235
Q ss_pred CCEEEEEcCChhHHhhhcccceeec
Q 045686 286 GSKIVFTTRSEEVCGEMGARRRFRV 310 (885)
Q Consensus 286 gs~IivTTR~~~v~~~~~~~~~~~l 310 (885)
|..||++|++.+.+.. .++++.+
T Consensus 186 g~til~~tH~~~~~~~--~d~v~~l 208 (274)
T PRK13644 186 GKTIVYITHNLEELHD--ADRIIVM 208 (274)
T ss_pred CCEEEEEecCHHHHhh--CCEEEEE
Confidence 7899999999877642 4444433
No 317
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.17 E-value=0.0022 Score=67.23 Aligned_cols=131 Identities=18% Similarity=0.195 Sum_probs=73.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--cc----------------EEEEEEEcCc---c--cHH--------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FD----------------LVIWVKVSRD---A--NLE-------- 219 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~----------------~~~wv~v~~~---~--~~~-------- 219 (885)
..+.+++|+|+.|+|||||++.++....+..+. |+ .+.++.-... + .+.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~ 104 (271)
T PRK13638 25 SLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLR 104 (271)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHH
Confidence 567899999999999999999998765432111 10 1222221100 0 011
Q ss_pred ----------HHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCC
Q 045686 220 ----------KIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQ 284 (885)
Q Consensus 220 ----------~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~ 284 (885)
....++++.+++.... ..-+..+...-.+.+.+..++-+++||+.....|........ .+.....
T Consensus 105 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~ 184 (271)
T PRK13638 105 NLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVA 184 (271)
T ss_pred HcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 0112234444432110 011223444445777888899999999999887765432111 1111223
Q ss_pred CCCEEEEEcCChhHHhh
Q 045686 285 TGSKIVFTTRSEEVCGE 301 (885)
Q Consensus 285 ~gs~IivTTR~~~v~~~ 301 (885)
.|..||++|++.+....
T Consensus 185 ~g~tii~vtH~~~~~~~ 201 (271)
T PRK13638 185 QGNHVIISSHDIDLIYE 201 (271)
T ss_pred CCCEEEEEeCCHHHHHH
Confidence 47789999999876544
No 318
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.17 E-value=0.0031 Score=66.65 Aligned_cols=132 Identities=17% Similarity=0.193 Sum_probs=76.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--c------------------cEEEEEEEcC---cc--cH-------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--F------------------DLVIWVKVSR---DA--NL------- 218 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f------------------~~~~wv~v~~---~~--~~------- 218 (885)
.++.+++|+|++|+|||||.+.++....+..+. + ..+.++.-.. -+ ++
T Consensus 31 ~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~ 110 (287)
T PRK13641 31 EEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFG 110 (287)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhccchHHHHHHHH
Confidence 577899999999999999999999875432221 1 0122222110 00 10
Q ss_pred -----------HHHHHHHHHHcCCCc-c-c---cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccc
Q 045686 219 -----------EKIQESILRRFEIPD-Q-M---WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDD 281 (885)
Q Consensus 219 -----------~~~~~~i~~~l~~~~-~-~---~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~ 281 (885)
.....++++.+++.. . . ..-+..+...-.+.+.+..++-+++||+.....|........ .+..
T Consensus 111 ~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~ 190 (287)
T PRK13641 111 PKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKD 190 (287)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 011234455556531 1 1 011233444456778888899999999999887754431111 1111
Q ss_pred cCCCCCEEEEEcCChhHHhhh
Q 045686 282 SSQTGSKIVFTTRSEEVCGEM 302 (885)
Q Consensus 282 ~~~~gs~IivTTR~~~v~~~~ 302 (885)
....|..||++|++.+.+...
T Consensus 191 l~~~g~tvlivsH~~~~~~~~ 211 (287)
T PRK13641 191 YQKAGHTVILVTHNMDDVAEY 211 (287)
T ss_pred HHhCCCEEEEEeCCHHHHHHh
Confidence 223588999999998765543
No 319
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=97.16 E-value=0.0021 Score=66.72 Aligned_cols=132 Identities=16% Similarity=0.127 Sum_probs=72.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--ccEE-EEEEEc----CcccH---------------HHH---HHHH
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FDLV-IWVKVS----RDANL---------------EKI---QESI 225 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~~~-~wv~v~----~~~~~---------------~~~---~~~i 225 (885)
.++.+++|+|++|+|||||++.++....+..+. ++.. .++... ...++ ... ...+
T Consensus 48 ~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~ 127 (264)
T PRK13546 48 YEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKI 127 (264)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 567899999999999999999999876433221 1111 111100 00111 111 1223
Q ss_pred HHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCCCCCEEEEEcCChhHHh
Q 045686 226 LRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQTGSKIVFTTRSEEVCG 300 (885)
Q Consensus 226 ~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~gs~IivTTR~~~v~~ 300 (885)
++.+++.... ..-+..+...-.+...+..++-+++||++.+..|........ .+......|..||++|++...+.
T Consensus 128 l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~ 207 (264)
T PRK13546 128 IEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVR 207 (264)
T ss_pred HHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHH
Confidence 3333332210 011223333445677778888999999998877754321111 11112235789999999987655
Q ss_pred hh
Q 045686 301 EM 302 (885)
Q Consensus 301 ~~ 302 (885)
.+
T Consensus 208 ~~ 209 (264)
T PRK13546 208 QF 209 (264)
T ss_pred HH
Confidence 43
No 320
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=97.16 E-value=0.002 Score=74.26 Aligned_cols=131 Identities=19% Similarity=0.186 Sum_probs=78.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--cc---------------EEEEEEEcC----cccH-----------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FD---------------LVIWVKVSR----DANL----------- 218 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~---------------~~~wv~v~~----~~~~----------- 218 (885)
..+.+++|+|+.|+|||||++.++....+..+. ++ .+.|+.-.. ..++
T Consensus 35 ~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~ 114 (510)
T PRK15439 35 HAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPKR 114 (510)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhcccccc
Confidence 567899999999999999999998765432111 11 122332110 0011
Q ss_pred ---HHHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCCCCCEEE
Q 045686 219 ---EKIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQTGSKIV 290 (885)
Q Consensus 219 ---~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~gs~Ii 290 (885)
.+...++++.+++.... ..-+..+...-.+.+.+..++-+++||+..+..|........ .+......|..||
T Consensus 115 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii 194 (510)
T PRK15439 115 QASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIV 194 (510)
T ss_pred hHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 12334566777764311 011223445556778888899999999999887764331111 1111223478899
Q ss_pred EEcCChhHHhh
Q 045686 291 FTTRSEEVCGE 301 (885)
Q Consensus 291 vTTR~~~v~~~ 301 (885)
++|++.+.+..
T Consensus 195 ivtHd~~~~~~ 205 (510)
T PRK15439 195 FISHKLPEIRQ 205 (510)
T ss_pred EEeCCHHHHHH
Confidence 99999776544
No 321
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=97.16 E-value=0.002 Score=69.94 Aligned_cols=130 Identities=16% Similarity=0.146 Sum_probs=77.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--ccE------------EEEEEEcCcc------c-------------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FDL------------VIWVKVSRDA------N------------- 217 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~~------------~~wv~v~~~~------~------------- 217 (885)
..+.+++|+|++|+|||||.+.++.-..+..+. |+. +.++. +.+ +
T Consensus 28 ~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~--Q~~~lfp~~tv~eNi~~~~~~~~ 105 (356)
T PRK11650 28 ADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVF--QNYALYPHMSVRENMAYGLKIRG 105 (356)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEe--CCccccCCCCHHHHHHhHHhhcC
Confidence 467899999999999999999999876432121 111 12221 111 0
Q ss_pred -----HHHHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCcccccccccc-ccccc-cCCCC
Q 045686 218 -----LEKIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVS-DLLDD-SSQTG 286 (885)
Q Consensus 218 -----~~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~-~~l~~-~~~~g 286 (885)
......++++.+++.... ..-+..+...-.+.+.+..++-+++||+..+..|....... ..+.. ....|
T Consensus 106 ~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g 185 (356)
T PRK11650 106 MPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLK 185 (356)
T ss_pred CCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 112234566666664311 11223445555688888999999999999887664322111 01111 12347
Q ss_pred CEEEEEcCChhHHhhh
Q 045686 287 SKIVFTTRSEEVCGEM 302 (885)
Q Consensus 287 s~IivTTR~~~v~~~~ 302 (885)
..||++|++.+.+..+
T Consensus 186 ~tii~vTHd~~ea~~l 201 (356)
T PRK11650 186 TTSLYVTHDQVEAMTL 201 (356)
T ss_pred CEEEEEeCCHHHHHHh
Confidence 8999999998655544
No 322
>PRK12377 putative replication protein; Provisional
Probab=97.16 E-value=0.0015 Score=66.40 Aligned_cols=76 Identities=22% Similarity=0.307 Sum_probs=46.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHHHcCCCccccCCCChhHHHHHHHHH
Q 045686 172 NEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILRRFEIPDQMWIGKDEDGRANEILSN 251 (885)
Q Consensus 172 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 251 (885)
....+.++|.+|+|||+||..+++.... . ...++++++. +++..+-..... ...... +.+.
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~~--~-g~~v~~i~~~------~l~~~l~~~~~~------~~~~~~----~l~~ 160 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLLA--K-GRSVIVVTVP------DVMSRLHESYDN------GQSGEK----FLQE 160 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHHH--c-CCCeEEEEHH------HHHHHHHHHHhc------cchHHH----HHHH
Confidence 3467899999999999999999998842 2 2335666543 344444333211 111111 2222
Q ss_pred hcCCCeEEEEecCCCc
Q 045686 252 LRGKKFVLLLDDVWER 267 (885)
Q Consensus 252 l~~k~~LlVLDdv~~~ 267 (885)
+ .+--|||+||+...
T Consensus 161 l-~~~dLLiIDDlg~~ 175 (248)
T PRK12377 161 L-CKVDLLVLDEIGIQ 175 (248)
T ss_pred h-cCCCEEEEcCCCCC
Confidence 2 35679999999543
No 323
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=97.15 E-value=0.0024 Score=65.64 Aligned_cols=132 Identities=19% Similarity=0.165 Sum_probs=74.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--c----------------cEEEEEEEcC----cccHH---------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--F----------------DLVIWVKVSR----DANLE--------- 219 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f----------------~~~~wv~v~~----~~~~~--------- 219 (885)
.++.+++|+|+.|+|||||++.++....+..+. + ..+.++.-.. ..++.
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~ 104 (240)
T PRK09493 25 DQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLR 104 (240)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHH
Confidence 567899999999999999999998765432110 0 0122221100 00110
Q ss_pred ----------HHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCC
Q 045686 220 ----------KIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQ 284 (885)
Q Consensus 220 ----------~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~ 284 (885)
....++++.+++.... ..-+..+...-.+.+.+..++-+++||+.....|........ .+.....
T Consensus 105 ~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~ 184 (240)
T PRK09493 105 VRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAE 184 (240)
T ss_pred hcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 1123445555553210 011223344445677777888899999998887765432111 1111223
Q ss_pred CCCEEEEEcCChhHHhhh
Q 045686 285 TGSKIVFTTRSEEVCGEM 302 (885)
Q Consensus 285 ~gs~IivTTR~~~v~~~~ 302 (885)
.|..||++|++.+.....
T Consensus 185 ~~~tiii~sH~~~~~~~~ 202 (240)
T PRK09493 185 EGMTMVIVTHEIGFAEKV 202 (240)
T ss_pred cCCEEEEEeCCHHHHHHh
Confidence 477899999998766543
No 324
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.0044 Score=68.17 Aligned_cols=171 Identities=16% Similarity=0.203 Sum_probs=97.3
Q ss_pred CCccchhHHHHHHHHHhhc------------CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHH
Q 045686 152 GKTVGLDSIISEVWRCIED------------HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLE 219 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~------------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 219 (885)
.++=|.++.+.++.+++.. ...+=|.++|++|+|||.||+.+++...+ . ++.++..
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~v---P-----f~~isAp---- 257 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGV---P-----FLSISAP---- 257 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCC---c-----eEeecch----
Confidence 3455899999998887731 34567889999999999999999998842 2 2333222
Q ss_pred HHHHHHHHHcCCCccccCCCChhHHHHHHHHHhcCCCeEEEEecCCCcc---ccc----------cc---cccccccccC
Q 045686 220 KIQESILRRFEIPDQMWIGKDEDGRANEILSNLRGKKFVLLLDDVWERL---DLS----------KV---GVSDLLDDSS 283 (885)
Q Consensus 220 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~---~~~----------~~---~~~~~l~~~~ 283 (885)
+|+..+ .+.+.+.+.+...++-..-+.++++||++... ++. .+ +..+.. ..
T Consensus 258 ----eivSGv-------SGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~--~~ 324 (802)
T KOG0733|consen 258 ----EIVSGV-------SGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSN--EK 324 (802)
T ss_pred ----hhhccc-------CcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccc--cc
Confidence 122111 23334444444455666789999999986421 110 00 111110 11
Q ss_pred CCCCEEEE---EcCChhHHhhh----cccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCc
Q 045686 284 QTGSKIVF---TTRSEEVCGEM----GARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGL 351 (885)
Q Consensus 284 ~~gs~Iiv---TTR~~~v~~~~----~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~Gl 351 (885)
..|-.||| |+|...+-..+ .-.+.|.+..-++.+-.+++...+..-....+.+ .++|++..-|.
T Consensus 325 ~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d----~~qlA~lTPGf 395 (802)
T KOG0733|consen 325 TKGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFD----FKQLAKLTPGF 395 (802)
T ss_pred cCCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcC----HHHHHhcCCCc
Confidence 22333444 55655442222 2345677888887777777777664333333344 45566666553
No 325
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.14 E-value=0.0038 Score=64.44 Aligned_cols=128 Identities=21% Similarity=0.213 Sum_probs=73.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhc---cCCCC--c-------------c-EEEEEEEcCcc-----c---------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFR---DTGHD--F-------------D-LVIWVKVSRDA-----N--------- 217 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~---~~~~~--f-------------~-~~~wv~v~~~~-----~--------- 217 (885)
.++.+++|+|+.|+|||||.+.++.... +..+. + . .+.++. +.. +
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~--q~~~l~~~tv~eni~~~~ 103 (246)
T PRK14269 26 EQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVF--QQPNVFVKSIYENISYAP 103 (246)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEe--cCCccccccHHHHhhhHH
Confidence 5678999999999999999999987532 11110 0 0 112221 111 0
Q ss_pred -----------HHHHHHHHHHHcCCCc------cc--cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-
Q 045686 218 -----------LEKIQESILRRFEIPD------QM--WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD- 277 (885)
Q Consensus 218 -----------~~~~~~~i~~~l~~~~------~~--~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~- 277 (885)
...-..++++.+++.. .. ..-+..+...-.+.+.+..++-+++||+.....|........
T Consensus 104 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~ 183 (246)
T PRK14269 104 KLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEE 183 (246)
T ss_pred hhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 0011234566666531 00 011234445556778888899999999998877654332111
Q ss_pred cccccCCCCCEEEEEcCChhHHhh
Q 045686 278 LLDDSSQTGSKIVFTTRSEEVCGE 301 (885)
Q Consensus 278 ~l~~~~~~gs~IivTTR~~~v~~~ 301 (885)
.+... ..|..||++|++.+....
T Consensus 184 ~l~~~-~~~~tiii~tH~~~~~~~ 206 (246)
T PRK14269 184 LLKEL-SHNLSMIMVTHNMQQGKR 206 (246)
T ss_pred HHHHH-hCCCEEEEEecCHHHHHh
Confidence 11112 237789999999875543
No 326
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=97.14 E-value=0.0042 Score=62.78 Aligned_cols=67 Identities=15% Similarity=0.129 Sum_probs=41.8
Q ss_pred hHHHHHHHHHhcCCCeEEEEecCCCccccccccccc---cccccCCCCCEEEEEcCChhHHhhhcccceeec
Q 045686 242 DGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD---LLDDSSQTGSKIVFTTRSEEVCGEMGARRRFRV 310 (885)
Q Consensus 242 ~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~---~l~~~~~~gs~IivTTR~~~v~~~~~~~~~~~l 310 (885)
+...-.+.+.+..++-++++|+.....|........ .+......|..||++|++.+.... ..+.+.+
T Consensus 145 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~--~d~i~~l 214 (218)
T cd03290 145 QRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPH--ADWIIAM 214 (218)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhh--CCEEEEe
Confidence 344445777888889999999998877655332111 111122347899999999876542 3444444
No 327
>PRK07261 topology modulation protein; Provisional
Probab=97.14 E-value=0.0016 Score=62.74 Aligned_cols=67 Identities=24% Similarity=0.436 Sum_probs=41.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHHHcCCCccccCCCChhHHHHHHHHHhcC
Q 045686 175 VIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILRRFEIPDQMWIGKDEDGRANEILSNLRG 254 (885)
Q Consensus 175 vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 254 (885)
.|.|+|++|+||||||+.+........-+.|...|-.. +...+.++....+...+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~ 58 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPN-----------------------WQERDDDDMIADISNFLLK 58 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccc-----------------------cccCCHHHHHHHHHHHHhC
Confidence 48999999999999999998765321123344444211 1122344555566666666
Q ss_pred CCeEEEEecCCC
Q 045686 255 KKFVLLLDDVWE 266 (885)
Q Consensus 255 k~~LlVLDdv~~ 266 (885)
.+ .|+|+...
T Consensus 59 ~~--wIidg~~~ 68 (171)
T PRK07261 59 HD--WIIDGNYS 68 (171)
T ss_pred CC--EEEcCcch
Confidence 66 57787753
No 328
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.14 E-value=0.0021 Score=65.95 Aligned_cols=66 Identities=18% Similarity=0.180 Sum_probs=41.9
Q ss_pred hHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCCCCCEEEEEcCChhHHhhhcccceeec
Q 045686 242 DGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQTGSKIVFTTRSEEVCGEMGARRRFRV 310 (885)
Q Consensus 242 ~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~gs~IivTTR~~~v~~~~~~~~~~~l 310 (885)
+...-.+.+.+..++-+++||++.+..|........ .+..... |..||++|++.+.... ..+.+.+
T Consensus 142 ~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~~~~--~d~~~~l 208 (236)
T cd03253 142 EKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLSTIVN--ADKIIVL 208 (236)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHHHh--CCEEEEE
Confidence 334445778888899999999999887755432111 1111223 7789999999877643 4444444
No 329
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=97.14 E-value=0.0023 Score=75.52 Aligned_cols=60 Identities=15% Similarity=0.123 Sum_probs=40.2
Q ss_pred hhHHHHHHHHHhcCCCeEEEEecCCCccccccccccccccccCCCCCEEEEEcCChhHHhhh
Q 045686 241 EDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSDLLDDSSQTGSKIVFTTRSEEVCGEM 302 (885)
Q Consensus 241 ~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~~l~~~~~~gs~IivTTR~~~v~~~~ 302 (885)
.+...-.+.+.|..++-+|+||+..+..|.........+ ....+..||++|++......+
T Consensus 153 GerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~--L~~~~~tviivsHd~~~l~~~ 212 (638)
T PRK10636 153 GWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKW--LKSYQGTLILISHDRDFLDPI 212 (638)
T ss_pred HHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHH--HHhCCCeEEEEeCCHHHHHHh
Confidence 344455677888889999999999998876654222111 111245799999998776554
No 330
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.14 E-value=0.015 Score=65.52 Aligned_cols=202 Identities=16% Similarity=0.126 Sum_probs=119.5
Q ss_pred CccchhHHHHHHHHHhh----c-CCCeEEEEEcCCCCcHHHHHHHHHhhhcc--CC---CCccEEEEEEEcCcccHHHHH
Q 045686 153 KTVGLDSIISEVWRCIE----D-HNEKVIGLYGMGGVGKTTLLKKLNNKFRD--TG---HDFDLVIWVKVSRDANLEKIQ 222 (885)
Q Consensus 153 ~~vgr~~~~~~l~~~L~----~-~~~~vi~I~G~gG~GKTtLa~~v~~~~~~--~~---~~f~~~~wv~v~~~~~~~~~~ 222 (885)
.+-+|+.+..+|-..+. + +.++.+-|.|.+|+|||..+..|.+.... .+ ..|+ .+.|+.-.-....+++
T Consensus 397 sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~~Y 475 (767)
T KOG1514|consen 397 SLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPREIY 475 (767)
T ss_pred cccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHHHH
Confidence 34589999999988873 2 44569999999999999999999885531 11 2344 3345544555789999
Q ss_pred HHHHHHcCCCccccCCCChhHHHHHHHHHhc-----CCCeEEEEecCCCcccc-ccccccccccccCCCCCEEEEEcC--
Q 045686 223 ESILRRFEIPDQMWIGKDEDGRANEILSNLR-----GKKFVLLLDDVWERLDL-SKVGVSDLLDDSSQTGSKIVFTTR-- 294 (885)
Q Consensus 223 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-----~k~~LlVLDdv~~~~~~-~~~~~~~~l~~~~~~gs~IivTTR-- 294 (885)
..|..++.... .........+..++. .+..++++|+++....- .++.-. .+.....++|+++|.+=
T Consensus 476 ~~I~~~lsg~~-----~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn-~fdWpt~~~sKLvvi~IaN 549 (767)
T KOG1514|consen 476 EKIWEALSGER-----VTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYN-IFDWPTLKNSKLVVIAIAN 549 (767)
T ss_pred HHHHHhcccCc-----ccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHH-HhcCCcCCCCceEEEEecc
Confidence 99999997643 233444445555443 45689999988543110 011000 01113445777766442
Q ss_pred ChhH---------HhhhcccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCchhHHHHHHHHH
Q 045686 295 SEEV---------CGEMGARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPLALVTIGHAM 362 (885)
Q Consensus 295 ~~~v---------~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~l 362 (885)
..+. +..+ ....+...+.++++-.++...+......-.....+=++++|+...|-.-.|+.+.-++.
T Consensus 550 TmdlPEr~l~nrvsSRl-g~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA~ 625 (767)
T KOG1514|consen 550 TMDLPERLLMNRVSSRL-GLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRAA 625 (767)
T ss_pred cccCHHHHhccchhhhc-cceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 1221 1111 22456778888888888887766433222222333456666666666666665544443
No 331
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=97.13 E-value=0.0025 Score=69.44 Aligned_cols=130 Identities=18% Similarity=0.222 Sum_probs=76.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--cc------------------EEEEEEEcCcc------cHH-----
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FD------------------LVIWVKVSRDA------NLE----- 219 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~------------------~~~wv~v~~~~------~~~----- 219 (885)
..+.+++|+|+.|+|||||++.++....+..+. ++ .+.++. +.+ ++.
T Consensus 21 ~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~--q~~~l~~~~tv~enl~~ 98 (354)
T TIGR02142 21 PGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVF--QEARLFPHLSVRGNLRY 98 (354)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEe--cCCccCCCCcHHHHHHH
Confidence 467899999999999999999998875432111 10 112221 111 111
Q ss_pred -----------HHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-ccccc-
Q 045686 220 -----------KIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDS- 282 (885)
Q Consensus 220 -----------~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~- 282 (885)
....++++.+++.... ..-+..+...-.+.+.+..++-+++||+.....|........ .+...
T Consensus 99 ~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~ 178 (354)
T TIGR02142 99 GMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLH 178 (354)
T ss_pred HhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHH
Confidence 1134556666664311 011234445556778888899999999998887754331111 11111
Q ss_pred CCCCCEEEEEcCChhHHhhh
Q 045686 283 SQTGSKIVFTTRSEEVCGEM 302 (885)
Q Consensus 283 ~~~gs~IivTTR~~~v~~~~ 302 (885)
...|..||++|++.+.+..+
T Consensus 179 ~~~g~tiiivtH~~~~~~~~ 198 (354)
T TIGR02142 179 AEFGIPILYVSHSLQEVLRL 198 (354)
T ss_pred HhcCCEEEEEecCHHHHHHh
Confidence 22367899999998765443
No 332
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=97.13 E-value=0.0026 Score=75.32 Aligned_cols=59 Identities=22% Similarity=0.258 Sum_probs=39.4
Q ss_pred hhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCCCCCEEEEEcCChhHHhhh
Q 045686 241 EDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQTGSKIVFTTRSEEVCGEM 302 (885)
Q Consensus 241 ~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~gs~IivTTR~~~v~~~~ 302 (885)
.+...-.|.+.|..++-+|+||+..+..|........ .+. .- +..||++|++......+
T Consensus 160 GekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~-~~--~~tvlivsHd~~~l~~~ 219 (635)
T PRK11147 160 GWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLK-TF--QGSIIFISHDRSFIRNM 219 (635)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHH-hC--CCEEEEEeCCHHHHHHh
Confidence 3445556778888889999999999987765442211 111 11 24799999998776554
No 333
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.12 E-value=0.0034 Score=66.26 Aligned_cols=131 Identities=18% Similarity=0.185 Sum_probs=76.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--cc------------------EEEEEEEcC---cc--c--------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FD------------------LVIWVKVSR---DA--N-------- 217 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~------------------~~~wv~v~~---~~--~-------- 217 (885)
.++.+++|+|++|+|||||++.++.......+. |+ .+.++.-.. -+ +
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~e~i~~~ 110 (286)
T PRK13646 31 EQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFG 110 (286)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhccchhhHHHHHHhh
Confidence 567899999999999999999999876432221 11 112221100 00 0
Q ss_pred ----------HHHHHHHHHHHcCCCcc--c---cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccc
Q 045686 218 ----------LEKIQESILRRFEIPDQ--M---WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDD 281 (885)
Q Consensus 218 ----------~~~~~~~i~~~l~~~~~--~---~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~ 281 (885)
......+++..+|+... . ..-+..+...-.+.+.+..++-+++||++....|........ .+..
T Consensus 111 ~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~ 190 (286)
T PRK13646 111 PKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKS 190 (286)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 01122345555666411 0 111233444556778888899999999999887765442221 1111
Q ss_pred c-CCCCCEEEEEcCChhHHhh
Q 045686 282 S-SQTGSKIVFTTRSEEVCGE 301 (885)
Q Consensus 282 ~-~~~gs~IivTTR~~~v~~~ 301 (885)
. ...|..||++|++.+.+..
T Consensus 191 l~~~~g~tvl~vtH~~~~~~~ 211 (286)
T PRK13646 191 LQTDENKTIILVSHDMNEVAR 211 (286)
T ss_pred HHHhCCCEEEEEecCHHHHHH
Confidence 1 2347899999999775543
No 334
>PRK10536 hypothetical protein; Provisional
Probab=97.12 E-value=0.0032 Score=63.35 Aligned_cols=55 Identities=20% Similarity=0.191 Sum_probs=41.0
Q ss_pred CCccchhHHHHHHHHHhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEE
Q 045686 152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIW 209 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~w 209 (885)
..+.+|......+..++.+. .++.++|+.|+|||+||..+..+.-. .+.|+.++.
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~l~-~~~~~kIiI 109 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEALI-HKDVDRIIV 109 (262)
T ss_pred ccccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHHHh-cCCeeEEEE
Confidence 44668888888888888663 59999999999999999998886421 234554433
No 335
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=97.12 E-value=0.002 Score=70.13 Aligned_cols=130 Identities=18% Similarity=0.216 Sum_probs=76.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--ccE------------------EEEEEEcCcc------cH------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FDL------------------VIWVKVSRDA------NL------ 218 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~~------------------~~wv~v~~~~------~~------ 218 (885)
..+.+++|+|+.|+|||||++.++....+..+. ++. +.++ .+.+ ++
T Consensus 22 ~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v--~q~~~l~~~~tv~enl~~ 99 (352)
T PRK11144 22 PAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYV--FQDARLFPHYKVRGNLRY 99 (352)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEE--cCCcccCCCCcHHHHHHh
Confidence 467899999999999999999999875432111 110 1111 1211 11
Q ss_pred ------HHHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-ccccc-CCCC
Q 045686 219 ------EKIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDS-SQTG 286 (885)
Q Consensus 219 ------~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~-~~~g 286 (885)
.....++++.+++.... ..-+..+...-.+.+.+..++-+++||+..+..|........ .+... ...|
T Consensus 100 ~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g 179 (352)
T PRK11144 100 GMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREIN 179 (352)
T ss_pred hhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 12234566677764311 012234444556788888899999999998876654321111 11111 2236
Q ss_pred CEEEEEcCChhHHhhh
Q 045686 287 SKIVFTTRSEEVCGEM 302 (885)
Q Consensus 287 s~IivTTR~~~v~~~~ 302 (885)
..||++|++.+.+..+
T Consensus 180 ~tii~vTHd~~~~~~~ 195 (352)
T PRK11144 180 IPILYVSHSLDEILRL 195 (352)
T ss_pred CeEEEEecCHHHHHHh
Confidence 7899999998765543
No 336
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=97.12 E-value=0.0024 Score=73.41 Aligned_cols=131 Identities=17% Similarity=0.189 Sum_probs=75.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--ccE--------------EEEEEEc-------C-----cccH----
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FDL--------------VIWVKVS-------R-----DANL---- 218 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~~--------------~~wv~v~-------~-----~~~~---- 218 (885)
..+.+++|+|++|+|||||++.++....+..+. ++. +.++.-. . ...+
T Consensus 27 ~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~ 106 (490)
T PRK10938 27 NAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEII 106 (490)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhceeccCcchhhcccchhhccccHHHhc
Confidence 567899999999999999999998765332111 100 1111000 0 0011
Q ss_pred ------HHHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCCCCC
Q 045686 219 ------EKIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQTGS 287 (885)
Q Consensus 219 ------~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~gs 287 (885)
..-..++++.+++.... ..-+..+...-.+.+.+..++-+++||+..+..|........ .+......|.
T Consensus 107 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~ 186 (490)
T PRK10938 107 QDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGI 186 (490)
T ss_pred ccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCC
Confidence 11234556666664210 112234445556777888888999999999887765432111 1111223478
Q ss_pred EEEEEcCChhHHhh
Q 045686 288 KIVFTTRSEEVCGE 301 (885)
Q Consensus 288 ~IivTTR~~~v~~~ 301 (885)
.||++|++.+.+..
T Consensus 187 tvii~tH~~~~~~~ 200 (490)
T PRK10938 187 TLVLVLNRFDEIPD 200 (490)
T ss_pred eEEEEeCCHHHHHh
Confidence 89999999766544
No 337
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.11 E-value=0.0031 Score=64.94 Aligned_cols=130 Identities=18% Similarity=0.164 Sum_probs=73.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--cc---------------EEEEEEEcC----cccH-----------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FD---------------LVIWVKVSR----DANL----------- 218 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~---------------~~~wv~v~~----~~~~----------- 218 (885)
.++.+++|+|++|+|||||.+.++....+..+. ++ .+.++.-.. ..++
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~ 105 (242)
T TIGR03411 26 DPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRD 105 (242)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhcc
Confidence 567899999999999999999999765432110 00 111211000 0011
Q ss_pred ---------------HHHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-c
Q 045686 219 ---------------EKIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-L 278 (885)
Q Consensus 219 ---------------~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~ 278 (885)
.....++++.+++.... ..-+..+...-.+.+.+..++-++++|++.+..|........ .
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~ 185 (242)
T TIGR03411 106 KSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAEL 185 (242)
T ss_pred cccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHH
Confidence 11233445555553210 011223444445777788888999999998887755432111 1
Q ss_pred ccccCCCCCEEEEEcCChhHHhh
Q 045686 279 LDDSSQTGSKIVFTTRSEEVCGE 301 (885)
Q Consensus 279 l~~~~~~gs~IivTTR~~~v~~~ 301 (885)
+.... .+..||+||++.+.+..
T Consensus 186 l~~~~-~~~tii~~sH~~~~~~~ 207 (242)
T TIGR03411 186 LKSLA-GKHSVVVVEHDMEFVRS 207 (242)
T ss_pred HHHHh-cCCEEEEEECCHHHHHH
Confidence 11112 25789999999876544
No 338
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=97.11 E-value=0.002 Score=66.27 Aligned_cols=65 Identities=18% Similarity=0.140 Sum_probs=40.4
Q ss_pred HHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCCCCCEEEEEcCChhHHhhhcccceeec
Q 045686 243 GRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQTGSKIVFTTRSEEVCGEMGARRRFRV 310 (885)
Q Consensus 243 ~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~gs~IivTTR~~~v~~~~~~~~~~~l 310 (885)
...-.+.+.+..++-++++|++....|........ .+.... .|..||++|++.+... . .++.+.+
T Consensus 145 ~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~~~~-~-~d~v~~l 210 (238)
T cd03249 145 KQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLSTIR-N-ADLIAVL 210 (238)
T ss_pred HHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHh-h-CCEEEEE
Confidence 34445667777788899999998877654332111 111122 5778999999987665 3 4444444
No 339
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=97.11 E-value=0.0021 Score=70.25 Aligned_cols=130 Identities=17% Similarity=0.181 Sum_probs=76.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--cc------------EEEEEEEcCcc------cH------------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FD------------LVIWVKVSRDA------NL------------ 218 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~------------~~~wv~v~~~~------~~------------ 218 (885)
..+.+++|+|++|+|||||.+.++....+..+. |+ .+.++. +.+ ++
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~--Q~~~l~~~~tv~eni~~~~~~~~ 104 (369)
T PRK11000 27 HEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVF--QSYALYPHLSVAENMSFGLKLAG 104 (369)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEe--CCcccCCCCCHHHHHHhHHhhcC
Confidence 467899999999999999999999875432111 11 122222 111 11
Q ss_pred ------HHHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-ccccc-CCCC
Q 045686 219 ------EKIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDS-SQTG 286 (885)
Q Consensus 219 ------~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~-~~~g 286 (885)
.....++++.+++.... ..-+..+...-.+.+.+..++-+++||+..+..|........ .+... ...|
T Consensus 105 ~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g 184 (369)
T PRK11000 105 AKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLG 184 (369)
T ss_pred CCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhC
Confidence 11234456666664311 012234445556788888899999999998877654321110 11111 2237
Q ss_pred CEEEEEcCChhHHhhh
Q 045686 287 SKIVFTTRSEEVCGEM 302 (885)
Q Consensus 287 s~IivTTR~~~v~~~~ 302 (885)
..||++|++.+.+..+
T Consensus 185 ~tvI~vTHd~~~~~~~ 200 (369)
T PRK11000 185 RTMIYVTHDQVEAMTL 200 (369)
T ss_pred CEEEEEeCCHHHHHHh
Confidence 8899999998755443
No 340
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=97.11 E-value=0.0014 Score=76.07 Aligned_cols=30 Identities=27% Similarity=0.377 Sum_probs=26.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccC
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDT 200 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~ 200 (885)
+++..++|+|+.|+|||||++.+.....+.
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~ 388 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLLMLLTGLLDPL 388 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 678999999999999999999998776543
No 341
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=97.11 E-value=0.0024 Score=60.52 Aligned_cols=126 Identities=17% Similarity=0.251 Sum_probs=70.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEE---EcCc--------------------ccHHHHH-----
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVK---VSRD--------------------ANLEKIQ----- 222 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~---v~~~--------------------~~~~~~~----- 222 (885)
..+.|++|.|+.|.||||+.++++.-..+.++ .+.++ ...+ .+.++-+
T Consensus 26 e~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G----~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~ 101 (245)
T COG4555 26 EEGEITGLLGENGAGKTTLLRMIATLLIPDSG----KVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFAR 101 (245)
T ss_pred ccceEEEEEcCCCCCchhHHHHHHHhccCCCc----eEEEeecccccChHHHhhhcceecCCcChhhhhhHHHHHHHHHH
Confidence 67899999999999999999999987754322 22222 0000 0111111
Q ss_pred -------------HHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCC
Q 045686 223 -------------ESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQ 284 (885)
Q Consensus 223 -------------~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~ 284 (885)
.++.+.+++.... ..-+......-.+.+.+-.++-++|||+..+..|........ .+.....
T Consensus 102 L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~ 181 (245)
T COG4555 102 LNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKN 181 (245)
T ss_pred HhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhc
Confidence 1222222221100 000112222334667777889999999999887765432211 1111445
Q ss_pred CCCEEEEEcCChhHHh
Q 045686 285 TGSKIVFTTRSEEVCG 300 (885)
Q Consensus 285 ~gs~IivTTR~~~v~~ 300 (885)
.|-.||+.|+..+-..
T Consensus 182 egr~viFSSH~m~Eve 197 (245)
T COG4555 182 EGRAVIFSSHIMQEVE 197 (245)
T ss_pred CCcEEEEecccHHHHH
Confidence 5778899999864433
No 342
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.11 E-value=0.0025 Score=65.26 Aligned_cols=66 Identities=15% Similarity=0.125 Sum_probs=41.1
Q ss_pred hHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCCCCCEEEEEcCChhHHhhhcccceeec
Q 045686 242 DGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQTGSKIVFTTRSEEVCGEMGARRRFRV 310 (885)
Q Consensus 242 ~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~gs~IivTTR~~~v~~~~~~~~~~~l 310 (885)
+...-.+.+.+..++-+++||++.+..|........ .+... ..|..||++|++.+.... .++.+.+
T Consensus 143 ~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~-~~~~tii~~sh~~~~~~~--~d~v~~l 209 (234)
T cd03251 143 QRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERL-MKNRTTFVIAHRLSTIEN--ADRIVVL 209 (234)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHh-cCCCEEEEEecCHHHHhh--CCEEEEe
Confidence 344445677778888899999998877655432111 11112 236789999999876643 4444444
No 343
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.10 E-value=0.0027 Score=66.66 Aligned_cols=131 Identities=21% Similarity=0.218 Sum_probs=74.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--cc----------------EEEEEEEcC--c-c--cH---------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FD----------------LVIWVKVSR--D-A--NL--------- 218 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~----------------~~~wv~v~~--~-~--~~--------- 218 (885)
.++.+++|+|+.|+|||||++.++.......+. ++ .+.++.-.. . + ++
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~ 105 (275)
T PRK13639 26 EKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPL 105 (275)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheEEEeeChhhhhccccHHHHHHHHHH
Confidence 567899999999999999999998765432221 11 122332211 0 1 11
Q ss_pred ---------HHHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCC
Q 045686 219 ---------EKIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQ 284 (885)
Q Consensus 219 ---------~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~ 284 (885)
.....++++.+++.... ..-+..+...-.+.+.+...+-++++|++....|........ .+.....
T Consensus 106 ~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~ 185 (275)
T PRK13639 106 NLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNK 185 (275)
T ss_pred HcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH
Confidence 01123445555553210 011223344445677788888999999998877655432111 1111222
Q ss_pred CCCEEEEEcCChhHHhh
Q 045686 285 TGSKIVFTTRSEEVCGE 301 (885)
Q Consensus 285 ~gs~IivTTR~~~v~~~ 301 (885)
.|..||++|++.+.+..
T Consensus 186 ~~~til~vtH~~~~~~~ 202 (275)
T PRK13639 186 EGITIIISTHDVDLVPV 202 (275)
T ss_pred CCCEEEEEecCHHHHHH
Confidence 47889999999776543
No 344
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.10 E-value=0.0039 Score=66.71 Aligned_cols=128 Identities=19% Similarity=0.170 Sum_probs=75.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--cc------------------------------EEEEEEEcCcc--
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FD------------------------------LVIWVKVSRDA-- 216 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~------------------------------~~~wv~v~~~~-- 216 (885)
.++.+++|+|..|+|||||++.++....+..+. ++ .+.++ .+.+
T Consensus 50 ~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v--~Q~~~~ 127 (320)
T PRK13631 50 EKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMV--FQFPEY 127 (320)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccccccccccccchHHHHHhcEEEE--EECchh
Confidence 578899999999999999999999765432111 11 01111 1111
Q ss_pred -----c------------------HHHHHHHHHHHcCCCcc--c---cCCCChhHHHHHHHHHhcCCCeEEEEecCCCcc
Q 045686 217 -----N------------------LEKIQESILRRFEIPDQ--M---WIGKDEDGRANEILSNLRGKKFVLLLDDVWERL 268 (885)
Q Consensus 217 -----~------------------~~~~~~~i~~~l~~~~~--~---~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~ 268 (885)
+ ......++++.+++... . ..-+..+...-.+.+.+..++-+++||+.....
T Consensus 128 ~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgL 207 (320)
T PRK13631 128 QLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGL 207 (320)
T ss_pred ccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCC
Confidence 0 01122345555665411 1 112234445556778888899999999998887
Q ss_pred ccccccccc-cccccCCCCCEEEEEcCChhHHh
Q 045686 269 DLSKVGVSD-LLDDSSQTGSKIVFTTRSEEVCG 300 (885)
Q Consensus 269 ~~~~~~~~~-~l~~~~~~gs~IivTTR~~~v~~ 300 (885)
|........ .+......|..||++|++.+.+.
T Consensus 208 D~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~ 240 (320)
T PRK13631 208 DPKGEHEMMQLILDAKANNKTVFVITHTMEHVL 240 (320)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHH
Confidence 765432211 11112234788999999987543
No 345
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.10 E-value=0.007 Score=55.75 Aligned_cols=133 Identities=17% Similarity=0.223 Sum_probs=84.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC------------------c--cEEEEE--EE----------------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD------------------F--DLVIWV--KV---------------- 212 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~------------------f--~~~~wv--~v---------------- 212 (885)
.....|+|+|++|+|||||.-..+.-.+...+. | ..+.+| +.
T Consensus 34 ~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPl 113 (228)
T COG4181 34 KRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPL 113 (228)
T ss_pred cCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccchhhhhccchh
Confidence 456789999999999999998887654321110 0 011111 10
Q ss_pred --cC--cccHHHHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCcccccccc--cccccccc
Q 045686 213 --SR--DANLEKIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVG--VSDLLDDS 282 (885)
Q Consensus 213 --~~--~~~~~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~--~~~~l~~~ 282 (885)
.. ..+.....+..+.++|+...- ..-+..++....|.+.+...+-+++-|+..-..|-..-. .-+.+...
T Consensus 114 eL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~ln 193 (228)
T COG4181 114 ELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALN 193 (228)
T ss_pred hhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHh
Confidence 11 224455677888888875421 123456677778999999999999999987654432210 00111114
Q ss_pred CCCCCEEEEEcCChhHHhhhc
Q 045686 283 SQTGSKIVFTTRSEEVCGEMG 303 (885)
Q Consensus 283 ~~~gs~IivTTR~~~v~~~~~ 303 (885)
...|++.|+.|+++.++..+.
T Consensus 194 re~G~TlVlVTHD~~LA~Rc~ 214 (228)
T COG4181 194 RERGTTLVLVTHDPQLAARCD 214 (228)
T ss_pred hhcCceEEEEeCCHHHHHhhh
Confidence 567999999999999988653
No 346
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=97.09 E-value=0.0033 Score=65.64 Aligned_cols=131 Identities=19% Similarity=0.187 Sum_probs=74.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--cc--------------EEEEEEEcCc----ccH------------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FD--------------LVIWVKVSRD----ANL------------ 218 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~--------------~~~wv~v~~~----~~~------------ 218 (885)
.++.+++|+|+.|+|||||++.++.......+. ++ .+.++.-... .++
T Consensus 35 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~ 114 (265)
T PRK10575 35 PAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWH 114 (265)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCccccc
Confidence 567899999999999999999998765432111 10 1222211000 011
Q ss_pred ----------HHHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-ccccc-
Q 045686 219 ----------EKIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDS- 282 (885)
Q Consensus 219 ----------~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~- 282 (885)
.....++++.+++.... ..-+..+...-.+.+.+..++-+++||+.....|........ .+...
T Consensus 115 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~ 194 (265)
T PRK10575 115 GALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLS 194 (265)
T ss_pred ccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 11123445555543210 011233444455777888899999999998887765432111 11112
Q ss_pred CCCCCEEEEEcCChhHHhh
Q 045686 283 SQTGSKIVFTTRSEEVCGE 301 (885)
Q Consensus 283 ~~~gs~IivTTR~~~v~~~ 301 (885)
...|..||++|++.+....
T Consensus 195 ~~~~~tiii~sH~~~~i~~ 213 (265)
T PRK10575 195 QERGLTVIAVLHDINMAAR 213 (265)
T ss_pred HhcCCEEEEEeCCHHHHHH
Confidence 2237889999999875543
No 347
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=97.09 E-value=0.0029 Score=74.19 Aligned_cols=30 Identities=30% Similarity=0.470 Sum_probs=26.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccC
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDT 200 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~ 200 (885)
+++..|+|+|.+|+|||||++.+..-..+.
T Consensus 497 ~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~ 526 (709)
T COG2274 497 PPGEKVAIVGRSGSGKSTLLKLLLGLYKPQ 526 (709)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 678999999999999999999998877553
No 348
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.011 Score=64.12 Aligned_cols=159 Identities=23% Similarity=0.300 Sum_probs=94.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHHHcCCCccccCCCChhHHHHHH---
Q 045686 172 NEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILRRFEIPDQMWIGKDEDGRANEI--- 248 (885)
Q Consensus 172 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l--- 248 (885)
+...+.+.|++|+|||+||..++.. ..|..+--++. +++ .| -+.......+
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~-----S~FPFvKiiSp------e~m-------iG--------~sEsaKc~~i~k~ 590 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALS-----SDFPFVKIISP------EDM-------IG--------LSESAKCAHIKKI 590 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhh-----cCCCeEEEeCh------HHc-------cC--------ccHHHHHHHHHHH
Confidence 4456778999999999999999765 34654433221 111 12 2222223333
Q ss_pred -HHHhcCCCeEEEEecCCCccccccccccc----------cccccCCCCCEEEE--EcCChhHHhhhcc----cceeecc
Q 045686 249 -LSNLRGKKFVLLLDDVWERLDLSKVGVSD----------LLDDSSQTGSKIVF--TTRSEEVCGEMGA----RRRFRVE 311 (885)
Q Consensus 249 -~~~l~~k~~LlVLDdv~~~~~~~~~~~~~----------~l~~~~~~gs~Iiv--TTR~~~v~~~~~~----~~~~~l~ 311 (885)
....+..--.||+||+....||-.++..+ .+.....+|-|.+| ||....|...|+- ...|.++
T Consensus 591 F~DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vp 670 (744)
T KOG0741|consen 591 FEDAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVP 670 (744)
T ss_pred HHHhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecC
Confidence 34445566899999998888887665433 12223445656554 7777788777653 3568888
Q ss_pred CCCh-HHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCchhHHHHHHHHH
Q 045686 312 CLSP-EAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPLALVTIGHAM 362 (885)
Q Consensus 312 ~L~~-~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~l 362 (885)
.++. ++..+.+...-- -.+.+.+.++.+...+| .-..|+-+-.++
T Consensus 671 nl~~~~~~~~vl~~~n~----fsd~~~~~~~~~~~~~~--~~vgIKklL~li 716 (744)
T KOG0741|consen 671 NLTTGEQLLEVLEELNI----FSDDEVRAIAEQLLSKK--VNVGIKKLLMLI 716 (744)
T ss_pred ccCchHHHHHHHHHccC----CCcchhHHHHHHHhccc--cchhHHHHHHHH
Confidence 8887 677777655431 12234455667776666 223344444433
No 349
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.09 E-value=0.0023 Score=67.65 Aligned_cols=130 Identities=21% Similarity=0.204 Sum_probs=77.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--cc------------------EEEEEEEcCcc-------c------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FD------------------LVIWVKVSRDA-------N------ 217 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~------------------~~~wv~v~~~~-------~------ 217 (885)
..+.+++|+|..|.|||||++.++....+..+. |+ .+.++ .+.+ +
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v--~q~~~~~l~~~tv~eni~ 108 (290)
T PRK13634 31 PSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIV--FQFPEHQLFEETVEKDIC 108 (290)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEE--eeCchhhhhhhhHHHHHH
Confidence 567899999999999999999999765432111 11 11222 2211 0
Q ss_pred ------------HHHHHHHHHHHcCCCcc--c---cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cc
Q 045686 218 ------------LEKIQESILRRFEIPDQ--M---WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LL 279 (885)
Q Consensus 218 ------------~~~~~~~i~~~l~~~~~--~---~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l 279 (885)
..+...++++.+++... . ..-+..+...-.+.+.+..++-++++|+.....|........ .+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L 188 (290)
T PRK13634 109 FGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMF 188 (290)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHH
Confidence 01123445556666421 1 011223444456778888999999999999887765432211 11
Q ss_pred ccc-CCCCCEEEEEcCChhHHhhh
Q 045686 280 DDS-SQTGSKIVFTTRSEEVCGEM 302 (885)
Q Consensus 280 ~~~-~~~gs~IivTTR~~~v~~~~ 302 (885)
... ...|..||++|++.+.+...
T Consensus 189 ~~l~~~~g~tviiitHd~~~~~~~ 212 (290)
T PRK13634 189 YKLHKEKGLTTVLVTHSMEDAARY 212 (290)
T ss_pred HHHHHhcCCEEEEEeCCHHHHHHh
Confidence 112 23478999999998765443
No 350
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=97.09 E-value=0.0026 Score=65.49 Aligned_cols=130 Identities=17% Similarity=0.221 Sum_probs=72.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC----------------c-cEEEEEEEcCc----ccH-----------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD----------------F-DLVIWVKVSRD----ANL----------- 218 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~----------------f-~~~~wv~v~~~----~~~----------- 218 (885)
.++.+++|+|+.|+|||||++.+.....+..+. + ..+.++.-... .++
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~ 106 (241)
T PRK10895 27 NSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIR 106 (241)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhcc
Confidence 567899999999999999999999875432111 0 01122210000 011
Q ss_pred --------HHHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCCC
Q 045686 219 --------EKIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQT 285 (885)
Q Consensus 219 --------~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~ 285 (885)
.....++++.+++.... ..-+..+...-.+.+.+..++-++++|++....|........ .+......
T Consensus 107 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 186 (241)
T PRK10895 107 DDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDS 186 (241)
T ss_pred cccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhc
Confidence 11223344544443210 011223334445677777888999999998876654331111 11112234
Q ss_pred CCEEEEEcCChhHHh
Q 045686 286 GSKIVFTTRSEEVCG 300 (885)
Q Consensus 286 gs~IivTTR~~~v~~ 300 (885)
|..||++|++.+...
T Consensus 187 g~tiii~sH~~~~~~ 201 (241)
T PRK10895 187 GLGVLITDHNVRETL 201 (241)
T ss_pred CCEEEEEEcCHHHHH
Confidence 778999999975443
No 351
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=97.09 E-value=0.00035 Score=83.01 Aligned_cols=195 Identities=14% Similarity=0.148 Sum_probs=92.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh-ccCCCCccEEEEEEEcCcccHHHHHHHHHHHcCCCccc-cCCCChhHHHHHHH
Q 045686 172 NEKVIGLYGMGGVGKTTLLKKLNNKF-RDTGHDFDLVIWVKVSRDANLEKIQESILRRFEIPDQM-WIGKDEDGRANEIL 249 (885)
Q Consensus 172 ~~~vi~I~G~gG~GKTtLa~~v~~~~-~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~~l~ 249 (885)
..++++|+|+.|.||||+.+.+.... ....+. +|.+.....+ ..+.++...++..... ....+...-...+.
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~-----~Vpa~~~~~~-~~~d~i~~~i~~~~si~~~LStfS~~m~~~~ 394 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLLALMFQSGI-----PIPANEHSEI-PYFEEIFADIGDEQSIEQNLSTFSGHMKNIS 394 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHHHHHHHhCC-----CccCCccccc-cchhheeeecChHhHHhhhhhHHHHHHHHHH
Confidence 34799999999999999999997662 111111 1111110000 0011111111110000 00011111112223
Q ss_pred HHhc--CCCeEEEEecCCCcccccccccc--ccccccCCCCCEEEEEcCChhHHhhhcccceeeccCCChH-HHHHHHHH
Q 045686 250 SNLR--GKKFVLLLDDVWERLDLSKVGVS--DLLDDSSQTGSKIVFTTRSEEVCGEMGARRRFRVECLSPE-AALDLFRY 324 (885)
Q Consensus 250 ~~l~--~k~~LlVLDdv~~~~~~~~~~~~--~~l~~~~~~gs~IivTTR~~~v~~~~~~~~~~~l~~L~~~-~~~~Lf~~ 324 (885)
..+. ..+-|+++|++....|....... ..+......|+.+|+||+..++.........+.-..+..+ +... +..
T Consensus 395 ~il~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~~~~~~~~~v~~~~~~~d~~~l~-p~Y 473 (771)
T TIGR01069 395 AILSKTTENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELKALMYNNEGVENASVLFDEETLS-PTY 473 (771)
T ss_pred HHHHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHHhcCCCCeEEeEEEEcCCCCc-eEE
Confidence 3332 47899999999887664433111 0111123468899999999887543322211111111111 1100 111
Q ss_pred HhcCcccCCccchHHHHHHHHHHhCCchhHHHHHHHHHhcCCChhhHHHHHHHHhc
Q 045686 325 KVGEDVYSSHFEISNLAQTVVEECRGLPLALVTIGHAMASRMGPTQWRYAVGELQR 380 (885)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~l~~~~~~~~w~~~~~~l~~ 380 (885)
+.-... +. ...|-.|++++ |+|-.|.--|..+.. ......+.+++.+..
T Consensus 474 kl~~G~-~g----~S~a~~iA~~~-Glp~~ii~~A~~~~~-~~~~~~~~li~~L~~ 522 (771)
T TIGR01069 474 KLLKGI-PG----ESYAFEIAQRY-GIPHFIIEQAKTFYG-EFKEEINVLIEKLSA 522 (771)
T ss_pred EECCCC-CC----CcHHHHHHHHh-CcCHHHHHHHHHHHH-hhHHHHHHHHHHHHH
Confidence 111111 11 23488888887 688888777776655 344466666665544
No 352
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.09 E-value=0.0036 Score=64.81 Aligned_cols=59 Identities=20% Similarity=0.148 Sum_probs=37.9
Q ss_pred hHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCCCCCEEEEEcCChhHHhh
Q 045686 242 DGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQTGSKIVFTTRSEEVCGE 301 (885)
Q Consensus 242 ~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~gs~IivTTR~~~v~~~ 301 (885)
+...-.+.+.+..++-+++||+..+..|........ .+... ..|..||++|++.+....
T Consensus 151 ~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~-~~~~tiii~sH~~~~~~~ 210 (250)
T PRK14247 151 QQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLEL-KKDMTIVLVTHFPQQAAR 210 (250)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHH
Confidence 344445677788889999999998877654331111 11112 236789999999876543
No 353
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=97.08 E-value=0.0028 Score=69.56 Aligned_cols=130 Identities=22% Similarity=0.262 Sum_probs=77.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--c--------------cEEEEEEEcCcc------c-----------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--F--------------DLVIWVKVSRDA------N----------- 217 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f--------------~~~~wv~v~~~~------~----------- 217 (885)
.++.+++|+|+.|+|||||.+.+.....+..+. + ..+.++. +.. +
T Consensus 27 ~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~--q~~~l~~~~tv~e~v~~~~~~ 104 (402)
T PRK09536 27 REGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVP--QDTSLSFEFDVRQVVEMGRTP 104 (402)
T ss_pred CCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEc--cCCCCCCCCCHHHHHHhccch
Confidence 577899999999999999999998765432110 0 0122221 110 0
Q ss_pred -----------HHHHHHHHHHHcCCCccc---c-CCCChhHHHHHHHHHhcCCCeEEEEecCCCcccccccccc-ccccc
Q 045686 218 -----------LEKIQESILRRFEIPDQM---W-IGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVS-DLLDD 281 (885)
Q Consensus 218 -----------~~~~~~~i~~~l~~~~~~---~-~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~-~~l~~ 281 (885)
..+...++++.+++.... . .-+..+...-.+.+.+..++-+++||+.....|....... -.+..
T Consensus 105 ~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~ 184 (402)
T PRK09536 105 HRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRR 184 (402)
T ss_pred hcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 112334555666654211 1 1123344455677888889999999999888776432111 11111
Q ss_pred cCCCCCEEEEEcCChhHHhhh
Q 045686 282 SSQTGSKIVFTTRSEEVCGEM 302 (885)
Q Consensus 282 ~~~~gs~IivTTR~~~v~~~~ 302 (885)
....|..||++|++.+.+...
T Consensus 185 l~~~g~TIIivsHdl~~~~~~ 205 (402)
T PRK09536 185 LVDDGKTAVAAIHDLDLAARY 205 (402)
T ss_pred HHhcCCEEEEEECCHHHHHHh
Confidence 223477999999998776543
No 354
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.08 E-value=0.0056 Score=64.51 Aligned_cols=61 Identities=15% Similarity=0.199 Sum_probs=38.9
Q ss_pred hhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCCCCCEEEEEcCChhHHhhh
Q 045686 241 EDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQTGSKIVFTTRSEEVCGEM 302 (885)
Q Consensus 241 ~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~gs~IivTTR~~~v~~~~ 302 (885)
.+...-.+.+.+..++-+++||+..+..|........ .+..... +..||++|++.+.+..+
T Consensus 184 Ge~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~-~~tiii~tH~~~~i~~~ 245 (285)
T PRK14254 184 GQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE-EYTVVIVTHNMQQAARI 245 (285)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHhh
Confidence 3444456777888899999999999887765432111 1111222 35799999997765543
No 355
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.004 Score=69.80 Aligned_cols=101 Identities=17% Similarity=0.330 Sum_probs=65.0
Q ss_pred CCCccchhHHHHHHHHHhh------cCCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHH
Q 045686 151 IGKTVGLDSIISEVWRCIE------DHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQES 224 (885)
Q Consensus 151 ~~~~vgr~~~~~~l~~~L~------~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~ 224 (885)
.++-+|.++-+++|++++. +.+++++..+|++|+|||.+|+.|+.... +.| +.++|+.-.+..+|-..
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALn---RkF---fRfSvGG~tDvAeIkGH 483 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALN---RKF---FRFSVGGMTDVAEIKGH 483 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhC---Cce---EEEeccccccHHhhccc
Confidence 4567899999999999983 35789999999999999999999999873 333 23455555555544211
Q ss_pred HHHHcCCCccccCCCChhHHHHHHHHHhcCCCeEEEEecCCC
Q 045686 225 ILRRFEIPDQMWIGKDEDGRANEILSNLRGKKFVLLLDDVWE 266 (885)
Q Consensus 225 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~ 266 (885)
...+.+.-+..++..+.. .+...=|+.+|+|+.
T Consensus 484 --------RRTYVGAMPGkiIq~LK~-v~t~NPliLiDEvDK 516 (906)
T KOG2004|consen 484 --------RRTYVGAMPGKIIQCLKK-VKTENPLILIDEVDK 516 (906)
T ss_pred --------ceeeeccCChHHHHHHHh-hCCCCceEEeehhhh
Confidence 111122222222222222 234556888999863
No 356
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.07 E-value=0.0029 Score=58.53 Aligned_cols=68 Identities=19% Similarity=0.197 Sum_probs=48.1
Q ss_pred ChhHHHHHHHHHhcCCCeEEEEecCCCcccccccccccc-ccccCCCCCEEEEEcCChhHHhhhcccce
Q 045686 240 DEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSDL-LDDSSQTGSKIVFTTRSEEVCGEMGARRR 307 (885)
Q Consensus 240 ~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~~-l~~~~~~gs~IivTTR~~~v~~~~~~~~~ 307 (885)
..++....|.+.|.-.+-.+.+|+..+..|.+-++..+. +.+....|-+.++.|+....|....+...
T Consensus 155 GGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~ 223 (256)
T COG4598 155 GGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVI 223 (256)
T ss_pred chHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheE
Confidence 455666678889999999999999999888776543331 22234567788888998887776554433
No 357
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=97.07 E-value=0.0037 Score=64.92 Aligned_cols=129 Identities=22% Similarity=0.286 Sum_probs=73.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--cc--------------EEEEEEEcCcc------cHH---------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FD--------------LVIWVKVSRDA------NLE--------- 219 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~--------------~~~wv~v~~~~------~~~--------- 219 (885)
.++.+++|+|+.|+|||||++.++.......+. ++ .+.++ .+.+ ++.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~--~q~~~~~~~~tv~e~l~~~~~~ 102 (256)
T TIGR03873 25 PPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALV--EQDSDTAVPLTVRDVVALGRIP 102 (256)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEe--cccCccCCCCCHHHHHHhcchh
Confidence 567899999999999999999998875432221 11 11222 1111 110
Q ss_pred -------------HHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccc
Q 045686 220 -------------KIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDD 281 (885)
Q Consensus 220 -------------~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~ 281 (885)
....++++.+++.... ..-+..+...-.+.+.+..++-+++||++....|........ .+..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 182 (256)
T TIGR03873 103 HRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRE 182 (256)
T ss_pred hhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHH
Confidence 1122334444442110 011223344445677778888999999998876654331111 1111
Q ss_pred cCCCCCEEEEEcCChhHHhh
Q 045686 282 SSQTGSKIVFTTRSEEVCGE 301 (885)
Q Consensus 282 ~~~~gs~IivTTR~~~v~~~ 301 (885)
....|..||++|++.+....
T Consensus 183 ~~~~~~tiii~sH~~~~~~~ 202 (256)
T TIGR03873 183 LAATGVTVVAALHDLNLAAS 202 (256)
T ss_pred HHhcCCEEEEEeCCHHHHHH
Confidence 22347789999999876644
No 358
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.07 E-value=0.0036 Score=65.82 Aligned_cols=129 Identities=22% Similarity=0.258 Sum_probs=74.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--ccE--------------EEEEEEcCcc-------cHH--------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FDL--------------VIWVKVSRDA-------NLE-------- 219 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~~--------------~~wv~v~~~~-------~~~-------- 219 (885)
.++.+++|+|..|+|||||++.++....+..+. |+. +.++ .+.+ ++.
T Consensus 28 ~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v--~q~~~~~~~~~tv~~~l~~~~~ 105 (277)
T PRK13652 28 PRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLV--FQNPDDQIFSPTVEQDIAFGPI 105 (277)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEE--ecCcccccccccHHHHHHhHHH
Confidence 567899999999999999999999775432221 111 1111 1111 110
Q ss_pred ----------HHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccC-
Q 045686 220 ----------KIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSS- 283 (885)
Q Consensus 220 ----------~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~- 283 (885)
....++++.+++.... ..-+..+...-.+.+.+..++-++++|++....|........ .+....
T Consensus 106 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~ 185 (277)
T PRK13652 106 NLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPE 185 (277)
T ss_pred HcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 1123444444543210 112233444556778888899999999999887754332111 111122
Q ss_pred CCCCEEEEEcCChhHHhh
Q 045686 284 QTGSKIVFTTRSEEVCGE 301 (885)
Q Consensus 284 ~~gs~IivTTR~~~v~~~ 301 (885)
..|..||++|++.+....
T Consensus 186 ~~g~tvli~tH~~~~~~~ 203 (277)
T PRK13652 186 TYGMTVIFSTHQLDLVPE 203 (277)
T ss_pred hcCCEEEEEecCHHHHHH
Confidence 237889999999765543
No 359
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.06 E-value=0.00077 Score=61.96 Aligned_cols=22 Identities=45% Similarity=0.528 Sum_probs=20.6
Q ss_pred EEEEcCCCCcHHHHHHHHHhhh
Q 045686 176 IGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 176 i~I~G~gG~GKTtLa~~v~~~~ 197 (885)
|.|+|++|+||||+|+.+++..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 5789999999999999999987
No 360
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=97.06 E-value=0.0031 Score=65.75 Aligned_cols=126 Identities=17% Similarity=0.140 Sum_probs=70.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--ccE--------------EEEEEEcCccc----------------H
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FDL--------------VIWVKVSRDAN----------------L 218 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~~--------------~~wv~v~~~~~----------------~ 218 (885)
.++.+++|+|..|.|||||++.++.-... .+. ++. +.+ +.+.+. .
T Consensus 28 ~~Ge~~~IvG~nGsGKSTLl~~L~gl~~~-~G~I~i~g~~i~~~~~~~lr~~i~~--v~q~~~lf~~tv~~nl~~~~~~~ 104 (275)
T cd03289 28 SPGQRVGLLGRTGSGKSTLLSAFLRLLNT-EGDIQIDGVSWNSVPLQKWRKAFGV--IPQKVFIFSGTFRKNLDPYGKWS 104 (275)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhhcCC-CcEEEECCEEhhhCCHHHHhhhEEE--ECCCcccchhhHHHHhhhccCCC
Confidence 57789999999999999999999876531 111 111 111 112111 0
Q ss_pred HHHHHHHHHHcCCCccc---cC------------CCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-ccccc
Q 045686 219 EKIQESILRRFEIPDQM---WI------------GKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDS 282 (885)
Q Consensus 219 ~~~~~~i~~~l~~~~~~---~~------------~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~ 282 (885)
.+-..+.++.+++.... .. -+..+...-.+.+.+..++-++++|+.....|........ .+. .
T Consensus 105 ~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~-~ 183 (275)
T cd03289 105 DEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLK-Q 183 (275)
T ss_pred HHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHH-H
Confidence 11122334444432100 00 1223334445677778888999999999887765332111 111 1
Q ss_pred CCCCCEEEEEcCChhHHh
Q 045686 283 SQTGSKIVFTTRSEEVCG 300 (885)
Q Consensus 283 ~~~gs~IivTTR~~~v~~ 300 (885)
...++.||++|++.+...
T Consensus 184 ~~~~~tii~isH~~~~i~ 201 (275)
T cd03289 184 AFADCTVILSEHRIEAML 201 (275)
T ss_pred hcCCCEEEEEECCHHHHH
Confidence 234788999888876544
No 361
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.0021 Score=71.05 Aligned_cols=133 Identities=17% Similarity=0.154 Sum_probs=76.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC----------------ccEEEEEEEcCcc---------------cHH
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD----------------FDLVIWVKVSRDA---------------NLE 219 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~----------------f~~~~wv~v~~~~---------------~~~ 219 (885)
.+++.++|+|.+|.|||||+..+..-..+.++. +..+.||.=.... ..+
T Consensus 345 ~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~ 424 (559)
T COG4988 345 KAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASD 424 (559)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCH
Confidence 567899999999999999999998776532222 2335666421110 112
Q ss_pred HHHHHHHHHcCCCcc----c---------cCCCC-hhHHHHHHHHHhcCCCeEEEEecCCCccccccccccccccccCCC
Q 045686 220 KIQESILRRFEIPDQ----M---------WIGKD-EDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSDLLDDSSQT 285 (885)
Q Consensus 220 ~~~~~i~~~l~~~~~----~---------~~~~~-~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~~l~~~~~~ 285 (885)
+-..+.+++.+...- + -.+-+ .+...-.+.+.+-.++-++++|+.....|.+.-......-..-.+
T Consensus 425 e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~ 504 (559)
T COG4988 425 EEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK 504 (559)
T ss_pred HHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh
Confidence 222233333322110 0 01112 233344577788888999999999988776544222111113345
Q ss_pred CCEEEEEcCChhHHhhhc
Q 045686 286 GSKIVFTTRSEEVCGEMG 303 (885)
Q Consensus 286 gs~IivTTR~~~v~~~~~ 303 (885)
+..+|+.|+....+..++
T Consensus 505 ~ktvl~itHrl~~~~~~D 522 (559)
T COG4988 505 QKTVLVITHRLEDAADAD 522 (559)
T ss_pred CCeEEEEEcChHHHhcCC
Confidence 677888888877766543
No 362
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=97.05 E-value=0.0021 Score=64.62 Aligned_cols=32 Identities=28% Similarity=0.258 Sum_probs=26.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCC
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGH 202 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~ 202 (885)
+++.+++|+|++|+|||||++.++....+..+
T Consensus 11 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG 42 (213)
T PRK15177 11 GYHEHIGILAAPGSGKTTLTRLLCGLDAPDEG 42 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCccCCCC
Confidence 46789999999999999999999987644333
No 363
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=97.05 E-value=0.0038 Score=67.80 Aligned_cols=130 Identities=17% Similarity=0.179 Sum_probs=76.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCC--CC--ccE------------EEEEEEcCcc------c-----------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTG--HD--FDL------------VIWVKVSRDA------N----------- 217 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~--~~--f~~------------~~wv~v~~~~------~----------- 217 (885)
....+++|+|++|+|||||.+.++.-..+.. +. |+. +.++ .+.+ +
T Consensus 29 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~v--fQ~~~l~p~~tv~enl~~~l~~ 106 (362)
T TIGR03258 29 EAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALL--FQNYALFPHLKVEDNVAFGLRA 106 (362)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEE--ECCcccCCCCcHHHHHHHHHHH
Confidence 4678999999999999999999998664432 11 111 1111 1111 1
Q ss_pred -------HHHHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccc-cccccccC-C
Q 045686 218 -------LEKIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGV-SDLLDDSS-Q 284 (885)
Q Consensus 218 -------~~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~-~~~l~~~~-~ 284 (885)
...-..++++.+++.... ..-+..+...-.+.+.+..++-+++||+..+..|...... ...+.... .
T Consensus 107 ~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~ 186 (362)
T TIGR03258 107 QKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEE 186 (362)
T ss_pred cCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHh
Confidence 112234556666664311 0112344455568888999999999999988766542211 11111112 2
Q ss_pred C-CCEEEEEcCChhHHhhh
Q 045686 285 T-GSKIVFTTRSEEVCGEM 302 (885)
Q Consensus 285 ~-gs~IivTTR~~~v~~~~ 302 (885)
. |..||++|++.+.+..+
T Consensus 187 ~~g~til~vTHd~~ea~~l 205 (362)
T TIGR03258 187 LPELTILCVTHDQDDALTL 205 (362)
T ss_pred CCCCEEEEEeCCHHHHHHh
Confidence 2 67899999998766544
No 364
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=97.04 E-value=0.003 Score=64.43 Aligned_cols=131 Identities=20% Similarity=0.221 Sum_probs=73.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--c-----------------cEEEEEEEcC------cccHH------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--F-----------------DLVIWVKVSR------DANLE------ 219 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f-----------------~~~~wv~v~~------~~~~~------ 219 (885)
..+.+++|+|++|+|||||.+.++....+..+. + ..+.++.-.. ..++.
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~ 108 (228)
T cd03257 29 KKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEP 108 (228)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHH
Confidence 567899999999999999999998775432111 0 0122221111 00110
Q ss_pred ----------HH----HHHHHHHcCCCcc--c--c-CCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cc
Q 045686 220 ----------KI----QESILRRFEIPDQ--M--W-IGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LL 279 (885)
Q Consensus 220 ----------~~----~~~i~~~l~~~~~--~--~-~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l 279 (885)
.. ..++++.+++... . . .-+..+...-.+.+.+..++-+++||+..+..|........ .+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l 188 (228)
T cd03257 109 LRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLL 188 (228)
T ss_pred HHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHH
Confidence 00 1234555555310 0 0 11223344445677788888999999998876654331111 11
Q ss_pred cccCC-CCCEEEEEcCChhHHhh
Q 045686 280 DDSSQ-TGSKIVFTTRSEEVCGE 301 (885)
Q Consensus 280 ~~~~~-~gs~IivTTR~~~v~~~ 301 (885)
..... .|..||++|++.+.+..
T Consensus 189 ~~~~~~~~~tii~~sH~~~~~~~ 211 (228)
T cd03257 189 KKLQEELGLTLLFITHDLGVVAK 211 (228)
T ss_pred HHHHHHcCCEEEEEeCCHHHHHH
Confidence 11222 27789999999876553
No 365
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.04 E-value=0.0042 Score=64.95 Aligned_cols=68 Identities=13% Similarity=0.072 Sum_probs=40.8
Q ss_pred hHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCCCCCEEEEEcCChhHHhhhcccceeecc
Q 045686 242 DGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQTGSKIVFTTRSEEVCGEMGARRRFRVE 311 (885)
Q Consensus 242 ~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~gs~IivTTR~~~v~~~~~~~~~~~l~ 311 (885)
+...-.+.+.+..++-+++||+.....|........ .+... ..+..||++|++.+.+.... ++.+.++
T Consensus 159 ~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~-~~~~tiiivtH~~~~~~~~~-d~i~~l~ 227 (269)
T PRK14259 159 QQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHEL-KKNFTIVIVTHNMQQAVRVS-DMTAFFN 227 (269)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhc-CEEEEEe
Confidence 334445677777888999999998877654331111 11112 23578999999876655432 3444443
No 366
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=97.04 E-value=0.0027 Score=64.87 Aligned_cols=131 Identities=17% Similarity=0.207 Sum_probs=73.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--cc------------EEEEEEEcCc----ccHH-------------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FD------------LVIWVKVSRD----ANLE------------- 219 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~------------~~~wv~v~~~----~~~~------------- 219 (885)
..+.+++|+|+.|+|||||++.++.......+. |+ .+.++.-... .++.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~ 102 (232)
T PRK10771 23 ERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKL 102 (232)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhcccccccCC
Confidence 567899999999999999999998765432121 11 1222221000 0110
Q ss_pred -----HHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-ccccc-CCCCCE
Q 045686 220 -----KIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDS-SQTGSK 288 (885)
Q Consensus 220 -----~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~-~~~gs~ 288 (885)
.-..++++.+++.... ..-+..+...-.+.+.+..++-+++||+.....|........ .+... ...|..
T Consensus 103 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~t 182 (232)
T PRK10771 103 NAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLT 182 (232)
T ss_pred CHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCE
Confidence 1123344445443210 011223344445667777888999999998877665332111 11112 223788
Q ss_pred EEEEcCChhHHhh
Q 045686 289 IVFTTRSEEVCGE 301 (885)
Q Consensus 289 IivTTR~~~v~~~ 301 (885)
||++|++.+....
T Consensus 183 iii~sH~~~~~~~ 195 (232)
T PRK10771 183 LLMVSHSLEDAAR 195 (232)
T ss_pred EEEEECCHHHHHH
Confidence 9999999876544
No 367
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.04 E-value=0.0039 Score=65.84 Aligned_cols=131 Identities=19% Similarity=0.196 Sum_probs=76.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--c----------------cEEEEEEEcC---cc--cH---------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--F----------------DLVIWVKVSR---DA--NL--------- 218 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f----------------~~~~wv~v~~---~~--~~--------- 218 (885)
..+.+++|+|+.|+|||||++.++....+..+. + ..+.++.-.. .+ ++
T Consensus 31 ~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~ 110 (287)
T PRK13637 31 EDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPI 110 (287)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhccccccHHHHHHhHHH
Confidence 567899999999999999999998765432111 0 0111221110 00 11
Q ss_pred ---------HHHHHHHHHHcCCC--c-cc---cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-ccccc
Q 045686 219 ---------EKIQESILRRFEIP--D-QM---WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDS 282 (885)
Q Consensus 219 ---------~~~~~~i~~~l~~~--~-~~---~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~ 282 (885)
.+...++++.+++. . .. ..-+..+...-.+.+.+..++-++++|+.....|........ .+...
T Consensus 111 ~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l 190 (287)
T PRK13637 111 NLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKEL 190 (287)
T ss_pred HCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHH
Confidence 11234566666764 1 11 111234455556788889999999999998877654332111 11112
Q ss_pred -CCCCCEEEEEcCChhHHhh
Q 045686 283 -SQTGSKIVFTTRSEEVCGE 301 (885)
Q Consensus 283 -~~~gs~IivTTR~~~v~~~ 301 (885)
...|..||++|++.+.+..
T Consensus 191 ~~~~g~tvi~vtHd~~~~~~ 210 (287)
T PRK13637 191 HKEYNMTIILVSHSMEDVAK 210 (287)
T ss_pred HHhcCCEEEEEeCCHHHHHH
Confidence 2237889999999765543
No 368
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=97.03 E-value=0.0037 Score=67.61 Aligned_cols=130 Identities=17% Similarity=0.153 Sum_probs=76.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--cc------------EEEEEEEcCcc------c-------------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FD------------LVIWVKVSRDA------N------------- 217 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~------------~~~wv~v~~~~------~------------- 217 (885)
..+.+++|+|++|+|||||.+.++.-..+..+. |+ .+.++. +.+ +
T Consensus 30 ~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vf--Q~~~lfp~~tv~eNi~~~l~~~~ 107 (351)
T PRK11432 30 KQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVF--QSYALFPHMSLGENVGYGLKMLG 107 (351)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEe--CCcccCCCCCHHHHHHHHHhHcC
Confidence 567899999999999999999998876442221 11 112221 111 1
Q ss_pred -----HHHHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCcccccccccc-ccccc-cCCCC
Q 045686 218 -----LEKIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVS-DLLDD-SSQTG 286 (885)
Q Consensus 218 -----~~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~-~~l~~-~~~~g 286 (885)
..+-..++++.+++.... ..-+..+...-.+.+.+..++-+++||+..+..|....... ..+.. ....|
T Consensus 108 ~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g 187 (351)
T PRK11432 108 VPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFN 187 (351)
T ss_pred CCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 112234455566654211 11223444555688888889999999999887664322111 11111 12347
Q ss_pred CEEEEEcCChhHHhhh
Q 045686 287 SKIVFTTRSEEVCGEM 302 (885)
Q Consensus 287 s~IivTTR~~~v~~~~ 302 (885)
..+|++|++.+.+..+
T Consensus 188 ~tii~vTHd~~e~~~l 203 (351)
T PRK11432 188 ITSLYVTHDQSEAFAV 203 (351)
T ss_pred CEEEEEcCCHHHHHHh
Confidence 8999999998766544
No 369
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=97.03 E-value=0.0037 Score=64.90 Aligned_cols=131 Identities=20% Similarity=0.188 Sum_probs=75.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--c-----------------------cEEEEEEEcCc------cc--
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--F-----------------------DLVIWVKVSRD------AN-- 217 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f-----------------------~~~~wv~v~~~------~~-- 217 (885)
..+.+++|+|+.|+|||||++.++.......+. + ..+.|+.-... ..
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~ 106 (253)
T TIGR02323 27 YPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAG 106 (253)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHHHhhhcceEEEEeCcccccCccccHH
Confidence 567899999999999999999998875432110 0 01223221110 00
Q ss_pred --H---------------HHHHHHHHHHcCCCcc--c--c-CCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccc
Q 045686 218 --L---------------EKIQESILRRFEIPDQ--M--W-IGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGV 275 (885)
Q Consensus 218 --~---------------~~~~~~i~~~l~~~~~--~--~-~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~ 275 (885)
+ .....++++.+++... . . .-+..+...-.+.+.+..++-++++|+..+..|......
T Consensus 107 ~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~ 186 (253)
T TIGR02323 107 ANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQAR 186 (253)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHH
Confidence 0 1112344555555311 0 0 112234444567788888999999999988777543322
Q ss_pred cc-ccccc-CCCCCEEEEEcCChhHHhh
Q 045686 276 SD-LLDDS-SQTGSKIVFTTRSEEVCGE 301 (885)
Q Consensus 276 ~~-~l~~~-~~~gs~IivTTR~~~v~~~ 301 (885)
.. .+... ...|..||++|++.+.+..
T Consensus 187 l~~~l~~~~~~~~~tii~vsH~~~~~~~ 214 (253)
T TIGR02323 187 LLDLLRGLVRDLGLAVIIVTHDLGVARL 214 (253)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 11 11111 2347899999999876554
No 370
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=97.03 E-value=0.004 Score=63.88 Aligned_cols=65 Identities=15% Similarity=0.172 Sum_probs=40.2
Q ss_pred HHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCCCCCEEEEEcCChhHHhhhcccceeec
Q 045686 243 GRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQTGSKIVFTTRSEEVCGEMGARRRFRV 310 (885)
Q Consensus 243 ~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~gs~IivTTR~~~v~~~~~~~~~~~l 310 (885)
...-.+.+.+..++-+++||+.....|........ .+.... .|..||++|++.+.... ..+.+.+
T Consensus 144 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~~~~~--~d~v~~l 209 (237)
T cd03252 144 RQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDIC-AGRTVIIIAHRLSTVKN--ADRIIVM 209 (237)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 33445667777788899999998877654332111 111122 37789999999877643 3444433
No 371
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=97.03 E-value=0.0046 Score=64.24 Aligned_cols=131 Identities=16% Similarity=0.224 Sum_probs=73.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--c--------------cEEEEEEEcCc----ccH------------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--F--------------DLVIWVKVSRD----ANL------------ 218 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f--------------~~~~wv~v~~~----~~~------------ 218 (885)
.++.+++|+|+.|+|||||++.++.......+. + ..+.++.-... .++
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~ 105 (258)
T PRK13548 26 RPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHG 105 (258)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhcccC
Confidence 567899999999999999999999875432221 0 01122211000 011
Q ss_pred ------HHHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhc------CCCeEEEEecCCCccccccccccc-cccc
Q 045686 219 ------EKIQESILRRFEIPDQM----WIGKDEDGRANEILSNLR------GKKFVLLLDDVWERLDLSKVGVSD-LLDD 281 (885)
Q Consensus 219 ------~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~------~k~~LlVLDdv~~~~~~~~~~~~~-~l~~ 281 (885)
.....++++.+++.... ..-+..+...-.+.+.+. .++-+++||+..+..|........ .+..
T Consensus 106 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 185 (258)
T PRK13548 106 LSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQ 185 (258)
T ss_pred CCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 11223445555553210 011223344445666666 578999999998887755431111 1111
Q ss_pred cC-CCCCEEEEEcCChhHHhh
Q 045686 282 SS-QTGSKIVFTTRSEEVCGE 301 (885)
Q Consensus 282 ~~-~~gs~IivTTR~~~v~~~ 301 (885)
.. ..|..||++|++.+....
T Consensus 186 ~~~~~~~tiii~sH~~~~~~~ 206 (258)
T PRK13548 186 LAHERGLAVIVVLHDLNLAAR 206 (258)
T ss_pred HHHhcCCEEEEEECCHHHHHH
Confidence 22 347789999999876543
No 372
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=97.03 E-value=0.0038 Score=73.74 Aligned_cols=129 Identities=19% Similarity=0.183 Sum_probs=75.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--cc---EEEEEEEcC--cc----cH------------HHHHHHHHH
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FD---LVIWVKVSR--DA----NL------------EKIQESILR 227 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~---~~~wv~v~~--~~----~~------------~~~~~~i~~ 227 (885)
..+.+++|+|+.|+|||||.+.++....+..+. +. .+.|+.-.. .. ++ ......++.
T Consensus 336 ~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~ 415 (638)
T PRK10636 336 VPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLG 415 (638)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHH
Confidence 567899999999999999999999876433222 11 122222110 00 11 111234555
Q ss_pred HcCCCccc-----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCCCCCEEEEEcCChhHHhh
Q 045686 228 RFEIPDQM-----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQTGSKIVFTTRSEEVCGE 301 (885)
Q Consensus 228 ~l~~~~~~-----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~gs~IivTTR~~~v~~~ 301 (885)
.++..... ..-+..+...-.+...+..++-+||||+..+..|........ .+. .. .| .||++|++...+..
T Consensus 416 ~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~-~~-~g-tvi~vSHd~~~~~~ 492 (638)
T PRK10636 416 GFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALI-DF-EG-ALVVVSHDRHLLRS 492 (638)
T ss_pred HcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHH-Hc-CC-eEEEEeCCHHHHHH
Confidence 66653210 011223344445777888899999999999887765442211 111 11 24 79999999887655
Q ss_pred h
Q 045686 302 M 302 (885)
Q Consensus 302 ~ 302 (885)
+
T Consensus 493 ~ 493 (638)
T PRK10636 493 T 493 (638)
T ss_pred h
Confidence 4
No 373
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=97.02 E-value=0.0034 Score=65.11 Aligned_cols=130 Identities=19% Similarity=0.171 Sum_probs=73.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--cc---------------------------EEEEEEEcCc----cc
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FD---------------------------LVIWVKVSRD----AN 217 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~---------------------------~~~wv~v~~~----~~ 217 (885)
.++.+++|+|++|+|||||++.++....+..+. ++ .+.++.-... .+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 103 (252)
T TIGR03005 24 AAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKT 103 (252)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchhHHHHHhhCeEEEecCcccCCCCc
Confidence 567899999999999999999999865432111 11 1222211100 01
Q ss_pred H-------------------HHHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCcccccccc
Q 045686 218 L-------------------EKIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVG 274 (885)
Q Consensus 218 ~-------------------~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~ 274 (885)
+ .....++++.+++.... ..-+..+...-.+.+.+..++-++++|++....|.....
T Consensus 104 v~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~ 183 (252)
T TIGR03005 104 VLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVG 183 (252)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence 1 01123455555553210 011223444445777788888999999998877654332
Q ss_pred ccc-cccccC-CCCCEEEEEcCChhHHh
Q 045686 275 VSD-LLDDSS-QTGSKIVFTTRSEEVCG 300 (885)
Q Consensus 275 ~~~-~l~~~~-~~gs~IivTTR~~~v~~ 300 (885)
... .+.... ..|..||++|++.+...
T Consensus 184 ~l~~~l~~~~~~~~~tiiivsH~~~~~~ 211 (252)
T TIGR03005 184 EVLNVIRRLASEHDLTMLLVTHEMGFAR 211 (252)
T ss_pred HHHHHHHHHHHhcCcEEEEEeCCHHHHH
Confidence 111 111112 23788999999876543
No 374
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=97.02 E-value=0.0039 Score=63.53 Aligned_cols=128 Identities=22% Similarity=0.224 Sum_probs=73.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh-----ccCCCC--c----------------cEEEEEEEcCcc-----cH----
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKF-----RDTGHD--F----------------DLVIWVKVSRDA-----NL---- 218 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~-----~~~~~~--f----------------~~~~wv~v~~~~-----~~---- 218 (885)
.++.+++|+|+.|+|||||++.++... ....+. + ..+.++. +.. ++
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~--q~~~~~~~tv~e~l 101 (227)
T cd03260 24 PKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVF--QKPNPFPGSIYDNV 101 (227)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEe--cCchhccccHHHHH
Confidence 567899999999999999999998865 332111 0 0122221 111 11
Q ss_pred ---------------HHHHHHHHHHcCCCcc--c----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc
Q 045686 219 ---------------EKIQESILRRFEIPDQ--M----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD 277 (885)
Q Consensus 219 ---------------~~~~~~i~~~l~~~~~--~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~ 277 (885)
.....++++.+++... . ..-+..+...-.+.+.+..++-++++|+.....|........
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~ 181 (227)
T cd03260 102 AYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIE 181 (227)
T ss_pred HhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHH
Confidence 1122345555555421 1 011223344445677788889999999998876654331111
Q ss_pred -cccccCCCCCEEEEEcCChhHHhh
Q 045686 278 -LLDDSSQTGSKIVFTTRSEEVCGE 301 (885)
Q Consensus 278 -~l~~~~~~gs~IivTTR~~~v~~~ 301 (885)
.+...... ..||++|++.+.+..
T Consensus 182 ~~l~~~~~~-~tii~~sH~~~~~~~ 205 (227)
T cd03260 182 ELIAELKKE-YTIVIVTHNMQQAAR 205 (227)
T ss_pred HHHHHHhhC-cEEEEEeccHHHHHH
Confidence 11112223 679999999875543
No 375
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=97.02 E-value=0.0026 Score=68.22 Aligned_cols=130 Identities=18% Similarity=0.222 Sum_probs=77.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--cc-----------------EEEEEEEcCcc--------cH-----
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FD-----------------LVIWVKVSRDA--------NL----- 218 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~-----------------~~~wv~v~~~~--------~~----- 218 (885)
..+.+++|+|.+|+|||||++.+..-.....+. |+ .+.+|. ++. .+
T Consensus 39 ~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~--Q~~~~~l~p~~~v~~~l~ 116 (327)
T PRK11308 39 ERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVF--QNPYGSLNPRKKVGQILE 116 (327)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEE--cCchhhcCCccCHHHHHH
Confidence 567899999999999999999998865432111 11 122222 111 11
Q ss_pred --------------HHHHHHHHHHcCCCcc--c---cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-c
Q 045686 219 --------------EKIQESILRRFEIPDQ--M---WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-L 278 (885)
Q Consensus 219 --------------~~~~~~i~~~l~~~~~--~---~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~ 278 (885)
.....++++.+++... . ..-+..+...-.+...+..++-+||+|+.....|.......+ .
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~l 196 (327)
T PRK11308 117 EPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNL 196 (327)
T ss_pred HHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHH
Confidence 1123455666666321 0 112233444456778888889999999998877654321111 1
Q ss_pred ccc-cCCCCCEEEEEcCChhHHhhh
Q 045686 279 LDD-SSQTGSKIVFTTRSEEVCGEM 302 (885)
Q Consensus 279 l~~-~~~~gs~IivTTR~~~v~~~~ 302 (885)
+.. ....|..||++|++..++..+
T Consensus 197 L~~l~~~~g~til~iTHdl~~~~~~ 221 (327)
T PRK11308 197 MMDLQQELGLSYVFISHDLSVVEHI 221 (327)
T ss_pred HHHHHHHcCCEEEEEeCCHHHHHHh
Confidence 111 223478999999998887654
No 376
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=97.02 E-value=0.0028 Score=73.02 Aligned_cols=130 Identities=19% Similarity=0.272 Sum_probs=77.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--cc---------------EEEEEEEcCc---------ccH------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FD---------------LVIWVKVSRD---------ANL------ 218 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~---------------~~~wv~v~~~---------~~~------ 218 (885)
..+.+++|+|+.|+|||||++.++....+..+. ++ .+.++. +. .++
T Consensus 287 ~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~--q~~~~~~l~~~~t~~~~l~~ 364 (510)
T PRK15439 287 RAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLP--EDRQSSGLYLDAPLAWNVCA 364 (510)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECC--CChhhCCccCCCcHHHHHHh
Confidence 567899999999999999999998764322111 10 112221 11 010
Q ss_pred ---------------HHHHHHHHHHcCCC-cc-c---cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-
Q 045686 219 ---------------EKIQESILRRFEIP-DQ-M---WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD- 277 (885)
Q Consensus 219 ---------------~~~~~~i~~~l~~~-~~-~---~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~- 277 (885)
.....++++.+++. .. . ..-+..+...-.+.+.+..++-+|+||+..+..|........
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~ 444 (510)
T PRK15439 365 LTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQ 444 (510)
T ss_pred hhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHH
Confidence 11233556666664 21 1 112334555556777888889999999999887765442211
Q ss_pred cccccCCCCCEEEEEcCChhHHhhh
Q 045686 278 LLDDSSQTGSKIVFTTRSEEVCGEM 302 (885)
Q Consensus 278 ~l~~~~~~gs~IivTTR~~~v~~~~ 302 (885)
.+......|..||++|++.+.+..+
T Consensus 445 ~l~~l~~~g~tiIivsHd~~~i~~~ 469 (510)
T PRK15439 445 LIRSIAAQNVAVLFISSDLEEIEQM 469 (510)
T ss_pred HHHHHHhCCCEEEEECCCHHHHHHh
Confidence 1111223478899999998776554
No 377
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.01 E-value=0.00034 Score=70.44 Aligned_cols=179 Identities=16% Similarity=0.160 Sum_probs=87.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHHHcCCCccc-cCCCChhHHHHHHH
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILRRFEIPDQM-WIGKDEDGRANEIL 249 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~~l~ 249 (885)
...+++.|+|+.|.||||+.+.+.--.-. +..-.+|.+... .-.....++..++..... ...+........+.
T Consensus 28 ~~~~~~~l~G~n~~GKstll~~i~~~~~l----a~~g~~vpa~~~--~~~~~~~il~~~~l~d~~~~~lS~~~~e~~~~a 101 (222)
T cd03285 28 GKSRFLIITGPNMGGKSTYIRQIGVIVLM----AQIGCFVPCDSA--DIPIVDCILARVGASDSQLKGVSTFMAEMLETA 101 (222)
T ss_pred cCCeEEEEECCCCCChHHHHHHHHHHHHH----HHhCCCcCcccE--EEeccceeEeeeccccchhcCcChHHHHHHHHH
Confidence 35789999999999999999887643210 000012221110 000122233333332211 01223333333444
Q ss_pred HHh--cCCCeEEEEecC---CCccccccccccc--cccccCCCCCEEEEEcCChhHHhhhcccc---eeeccCCChH--H
Q 045686 250 SNL--RGKKFVLLLDDV---WERLDLSKVGVSD--LLDDSSQTGSKIVFTTRSEEVCGEMGARR---RFRVECLSPE--A 317 (885)
Q Consensus 250 ~~l--~~k~~LlVLDdv---~~~~~~~~~~~~~--~l~~~~~~gs~IivTTR~~~v~~~~~~~~---~~~l~~L~~~--~ 317 (885)
..+ ...+-|+++|++ .+..|........ .+ ....|+.+|+||+..++........ ..++.....+ +
T Consensus 102 ~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l--~~~~~~~vlisTH~~el~~~~~~~~~i~~g~~~~~~~~~~~ 179 (222)
T cd03285 102 AILKSATENSLIIIDELGRGTSTYDGFGLAWAIAEYI--ATQIKCFCLFATHFHELTALADEVPNVKNLHVTALTDDASR 179 (222)
T ss_pred HHHHhCCCCeEEEEecCcCCCChHHHHHHHHHHHHHH--HhcCCCeEEEEechHHHHHHhhcCCCeEEEEEEEEEeCCCC
Confidence 444 367899999999 5544443321111 11 1234789999999877755332211 1222221111 1
Q ss_pred HHHHHHHHhcCcccCCccchHHHHHHHHHHhCCchhHHHHHHHHHhc
Q 045686 318 ALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPLALVTIGHAMAS 364 (885)
Q Consensus 318 ~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~l~~ 364 (885)
.. .|..+..... .. ...|-.+++.+ |+|-.+..-|..+..
T Consensus 180 ~~-~~~Y~l~~G~-~~----~s~a~~~a~~~-g~p~~vi~~A~~~~~ 219 (222)
T cd03285 180 TL-TMLYKVEKGA-CD----QSFGIHVAELA-NFPKEVIEMAKQKAL 219 (222)
T ss_pred cE-eEEEEEeeCC-CC----CcHHHHHHHHh-CcCHHHHHHHHHHHH
Confidence 11 1111111111 01 23477788777 789888777765543
No 378
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=97.01 E-value=0.0053 Score=63.77 Aligned_cols=131 Identities=16% Similarity=0.145 Sum_probs=72.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--cc--------------EEEEEEEcC----cccH------------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FD--------------LVIWVKVSR----DANL------------ 218 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~--------------~~~wv~v~~----~~~~------------ 218 (885)
.++.+++|+|.+|+|||||++.++....+..+. ++ .+.++.-.. ..++
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~ 105 (255)
T PRK11231 26 PTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWL 105 (255)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCccHHHHHHhccchhh
Confidence 567899999999999999999998765432121 00 112211000 0011
Q ss_pred ----------HHHHHHHHHHcCCCcc--c--cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccC
Q 045686 219 ----------EKIQESILRRFEIPDQ--M--WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSS 283 (885)
Q Consensus 219 ----------~~~~~~i~~~l~~~~~--~--~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~ 283 (885)
......+++.+++... . ..-+..+...-.+.+.+..++-++++|+..+..|........ .+....
T Consensus 106 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~ 185 (255)
T PRK11231 106 SLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELN 185 (255)
T ss_pred hhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 1112233444444310 0 011223344445677778888999999998877755432111 111122
Q ss_pred CCCCEEEEEcCChhHHhh
Q 045686 284 QTGSKIVFTTRSEEVCGE 301 (885)
Q Consensus 284 ~~gs~IivTTR~~~v~~~ 301 (885)
..|..||++|++.+....
T Consensus 186 ~~~~tiii~tH~~~~~~~ 203 (255)
T PRK11231 186 TQGKTVVTVLHDLNQASR 203 (255)
T ss_pred HCCCEEEEEECCHHHHHH
Confidence 347789999999775443
No 379
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.01 E-value=0.0019 Score=62.20 Aligned_cols=47 Identities=21% Similarity=0.231 Sum_probs=42.0
Q ss_pred CCccchhHHHHHHHHHhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 045686 152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 198 (885)
.++||-++.++.+.-.-.+++.+-+.|.||+|+||||-+..+++..-
T Consensus 27 ~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LL 73 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELL 73 (333)
T ss_pred HHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHh
Confidence 46899999999998888888899999999999999999999888774
No 380
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.01 E-value=0.0018 Score=68.10 Aligned_cols=128 Identities=18% Similarity=0.161 Sum_probs=73.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--ccE--------------EEEEEEcCcc-------cHH--------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FDL--------------VIWVKVSRDA-------NLE-------- 219 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~~--------------~~wv~v~~~~-------~~~-------- 219 (885)
..+.+++|+|+.|.|||||++.++....+..+. |+. +.++ .+.+ ++.
T Consensus 31 ~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~--~q~~~~~~~~~tv~enl~~~~~ 108 (279)
T PRK13635 31 YEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMV--FQNPDNQFVGATVQDDVAFGLE 108 (279)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEE--EeCHHHhcccccHHHHHhhhHh
Confidence 567899999999999999999999776432221 111 1111 1111 110
Q ss_pred ----------HHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccC-
Q 045686 220 ----------KIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSS- 283 (885)
Q Consensus 220 ----------~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~- 283 (885)
....+++..+++.... ..-+..+...-.+.+.+..++-+++||+.....|........ .+....
T Consensus 109 ~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~ 188 (279)
T PRK13635 109 NIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKE 188 (279)
T ss_pred hCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 1123334444443210 011223344445677788889999999998887755432211 111122
Q ss_pred CCCCEEEEEcCChhHHh
Q 045686 284 QTGSKIVFTTRSEEVCG 300 (885)
Q Consensus 284 ~~gs~IivTTR~~~v~~ 300 (885)
..|..||++|++.+...
T Consensus 189 ~~~~tilivsH~~~~~~ 205 (279)
T PRK13635 189 QKGITVLSITHDLDEAA 205 (279)
T ss_pred cCCCEEEEEecCHHHHH
Confidence 23789999999987664
No 381
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=97.00 E-value=0.0037 Score=64.06 Aligned_cols=131 Identities=19% Similarity=0.173 Sum_probs=73.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--c------------cEEEEEEEcC----cccHH-------------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--F------------DLVIWVKVSR----DANLE------------- 219 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f------------~~~~wv~v~~----~~~~~------------- 219 (885)
.++.+++|+|+.|+|||||.+.++....+..+. | ..+.++.-.. ..+..
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~ 103 (237)
T TIGR00968 24 PTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHP 103 (237)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHHHHHHhHHHhcCCC
Confidence 567899999999999999999999765432121 1 1122221100 00111
Q ss_pred -----HHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCC-CCCE
Q 045686 220 -----KIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQ-TGSK 288 (885)
Q Consensus 220 -----~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~-~gs~ 288 (885)
+...++++++++.... ..-+..+...-.+.+.+..++-++++|+.....|........ .+..... .|..
T Consensus 104 ~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~t 183 (237)
T TIGR00968 104 KAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVT 183 (237)
T ss_pred HHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCE
Confidence 1123444555543210 011223334445677778888999999998877654432211 1111222 3788
Q ss_pred EEEEcCChhHHhh
Q 045686 289 IVFTTRSEEVCGE 301 (885)
Q Consensus 289 IivTTR~~~v~~~ 301 (885)
||++|++.+.+..
T Consensus 184 vli~sH~~~~~~~ 196 (237)
T TIGR00968 184 TVFVTHDQEEAME 196 (237)
T ss_pred EEEEeCCHHHHHh
Confidence 9999999875544
No 382
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.00 E-value=0.003 Score=66.94 Aligned_cols=46 Identities=20% Similarity=0.374 Sum_probs=40.6
Q ss_pred CccchhHHHHHHHHHhhc------CCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 045686 153 KTVGLDSIISEVWRCIED------HNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (885)
Q Consensus 153 ~~vgr~~~~~~l~~~L~~------~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 198 (885)
+++|.++.++++++++.. ...+++.++|++|+||||||+.+++...
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~ 103 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 689999999999999843 3468999999999999999999998874
No 383
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.00 E-value=0.0034 Score=64.16 Aligned_cols=130 Identities=23% Similarity=0.175 Sum_probs=74.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--cc------------EEEEEEEcC----cccHH-------------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FD------------LVIWVKVSR----DANLE------------- 219 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~------------~~~wv~v~~----~~~~~------------- 219 (885)
.++.+++|+|..|+|||||.+.++....+..+. ++ .+.++.-.. ..++.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~~~ 103 (232)
T cd03300 24 KEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLP 103 (232)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEecccccCCCCcHHHHHHHHHHhcCCC
Confidence 567899999999999999999999876543221 11 112221100 00110
Q ss_pred -----HHHHHHHHHcCCCccc---c-CCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccC-CCCCE
Q 045686 220 -----KIQESILRRFEIPDQM---W-IGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSS-QTGSK 288 (885)
Q Consensus 220 -----~~~~~i~~~l~~~~~~---~-~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~-~~gs~ 288 (885)
.....+++.+++.... . .-+..+...-.+.+.+..++-+++||++....|........ .+.... ..|..
T Consensus 104 ~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~t 183 (232)
T cd03300 104 KAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGIT 183 (232)
T ss_pred HHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCE
Confidence 1123445555654211 0 11223444445778888899999999998876654332211 111112 23789
Q ss_pred EEEEcCChhHHh
Q 045686 289 IVFTTRSEEVCG 300 (885)
Q Consensus 289 IivTTR~~~v~~ 300 (885)
||++|++.+...
T Consensus 184 iii~sh~~~~~~ 195 (232)
T cd03300 184 FVFVTHDQEEAL 195 (232)
T ss_pred EEEEeCCHHHHH
Confidence 999999886543
No 384
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.00 E-value=0.0052 Score=65.50 Aligned_cols=60 Identities=17% Similarity=0.186 Sum_probs=38.0
Q ss_pred hHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCCCCCEEEEEcCChhHHhhh
Q 045686 242 DGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQTGSKIVFTTRSEEVCGEM 302 (885)
Q Consensus 242 ~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~gs~IivTTR~~~v~~~~ 302 (885)
+...-.+.+.+..++-+++||+.....|........ .+..... +..||++|++.+.+..+
T Consensus 205 q~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~~i~~~ 265 (305)
T PRK14264 205 QQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNMQQAARI 265 (305)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHHHHHHh
Confidence 344445777778889999999998877654331111 1111222 36799999998775543
No 385
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.99 E-value=0.0086 Score=72.14 Aligned_cols=176 Identities=18% Similarity=0.224 Sum_probs=94.0
Q ss_pred CCccchhHHHHHHHHHhhc-------------CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccH
Q 045686 152 GKTVGLDSIISEVWRCIED-------------HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANL 218 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~-------------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 218 (885)
+++.|.+..++++.+++.- ...+-+.++|++|+||||||+.+++... ..| +.++.+
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~---~~~---i~i~~~----- 246 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAG---AYF---ISINGP----- 246 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhC---CeE---EEEecH-----
Confidence 3577999999988877621 3346788999999999999999998762 222 222211
Q ss_pred HHHHHHHHHHcCCCccccCCCChhHHHHHHHHHhcCCCeEEEEecCCCcccc-----cc----ccc-cc-cccccCCCCC
Q 045686 219 EKIQESILRRFEIPDQMWIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDL-----SK----VGV-SD-LLDDSSQTGS 287 (885)
Q Consensus 219 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~-----~~----~~~-~~-~l~~~~~~gs 287 (885)
.+. ... .+.....+...+.......+.+|++||++....- .. ... .+ .+......+.
T Consensus 247 -~i~----~~~-------~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~ 314 (733)
T TIGR01243 247 -EIM----SKY-------YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGR 314 (733)
T ss_pred -HHh----ccc-------ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCC
Confidence 111 000 1111222233333344556789999998642110 00 000 00 0000112333
Q ss_pred EEEE-EcCChh-HHhhh----cccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCchhH
Q 045686 288 KIVF-TTRSEE-VCGEM----GARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPLA 354 (885)
Q Consensus 288 ~Iiv-TTR~~~-v~~~~----~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLa 354 (885)
.++| ||...+ +...+ .-...+.+...+.++-.++++..........+.. ...+++.+.|..-+
T Consensus 315 vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~----l~~la~~t~G~~ga 383 (733)
T TIGR01243 315 VIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVD----LDKLAEVTHGFVGA 383 (733)
T ss_pred EEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccC----HHHHHHhCCCCCHH
Confidence 4444 454332 21111 1234677888888888888886553322212222 56788888886543
No 386
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=96.99 E-value=0.0043 Score=67.25 Aligned_cols=131 Identities=19% Similarity=0.172 Sum_probs=78.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--ccE------------EEEEEEcCcc------c-------------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FDL------------VIWVKVSRDA------N------------- 217 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~~------------~~wv~v~~~~------~------------- 217 (885)
..+.+++|+|++|+|||||.+.++....+..+. ++. +.++ .+.+ +
T Consensus 28 ~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v--~Q~~~lfp~~tv~eNi~~~~~~~~ 105 (353)
T TIGR03265 28 KKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIV--FQSYALFPNLTVADNIAYGLKNRG 105 (353)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEE--eCCcccCCCCcHHHHHHHHHHhcC
Confidence 467899999999999999999999876532121 111 1111 1111 0
Q ss_pred -----HHHHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccc-cccccc-cCCCC
Q 045686 218 -----LEKIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGV-SDLLDD-SSQTG 286 (885)
Q Consensus 218 -----~~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~-~~~l~~-~~~~g 286 (885)
......++++.+++.... ..-+..+...-.+.+.|..++-+++||+.....|...... ...+.. ....|
T Consensus 106 ~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~ 185 (353)
T TIGR03265 106 MGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLG 185 (353)
T ss_pred CCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 122345566777764311 1122344555568888889999999999988766432211 011111 12347
Q ss_pred CEEEEEcCChhHHhhhc
Q 045686 287 SKIVFTTRSEEVCGEMG 303 (885)
Q Consensus 287 s~IivTTR~~~v~~~~~ 303 (885)
..||++|++.+.+..+.
T Consensus 186 ~tvi~vTHd~~ea~~l~ 202 (353)
T TIGR03265 186 VTTIMVTHDQEEALSMA 202 (353)
T ss_pred CEEEEEcCCHHHHHHhC
Confidence 89999999987665543
No 387
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=96.99 E-value=0.0033 Score=72.37 Aligned_cols=132 Identities=16% Similarity=0.167 Sum_probs=77.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--cc---------------EEEEEEEc----Cccc------------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FD---------------LVIWVKVS----RDAN------------ 217 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~---------------~~~wv~v~----~~~~------------ 217 (885)
..+.+++|+|+.|+|||||++.++....+..+. |+ .+.++.-. ...+
T Consensus 28 ~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~ 107 (501)
T PRK10762 28 YPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFV 107 (501)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccccc
Confidence 567899999999999999999998765432111 11 12222100 0000
Q ss_pred -------H---HHHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-ccccc
Q 045686 218 -------L---EKIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDS 282 (885)
Q Consensus 218 -------~---~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~ 282 (885)
. .....++++.+++.... ..-+..+...-.+.+.+..++-+++||+..+..|........ .+...
T Consensus 108 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l 187 (501)
T PRK10762 108 NRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIREL 187 (501)
T ss_pred cccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHH
Confidence 0 12234566666664311 011234445556778888899999999999887764332111 11112
Q ss_pred CCCCCEEEEEcCChhHHhhh
Q 045686 283 SQTGSKIVFTTRSEEVCGEM 302 (885)
Q Consensus 283 ~~~gs~IivTTR~~~v~~~~ 302 (885)
...|..||++|++.+.+...
T Consensus 188 ~~~~~tvii~sHd~~~~~~~ 207 (501)
T PRK10762 188 KSQGRGIVYISHRLKEIFEI 207 (501)
T ss_pred HHCCCEEEEEeCCHHHHHHh
Confidence 23477899999997665543
No 388
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=96.99 E-value=0.0047 Score=64.58 Aligned_cols=59 Identities=20% Similarity=0.222 Sum_probs=37.6
Q ss_pred hHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCCCCCEEEEEcCChhHHhh
Q 045686 242 DGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQTGSKIVFTTRSEEVCGE 301 (885)
Q Consensus 242 ~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~gs~IivTTR~~~v~~~ 301 (885)
+...-.+.+.+..++-+++||+.....|........ .+... ..+..||++|++.+.+..
T Consensus 168 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l-~~~~tiiivtH~~~~~~~ 227 (267)
T PRK14235 168 QQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDEL-RQNYTIVIVTHSMQQAAR 227 (267)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHH-hcCCeEEEEEcCHHHHHh
Confidence 344445777788889999999998877654332111 11112 225689999998776544
No 389
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=96.98 E-value=0.0028 Score=64.72 Aligned_cols=131 Identities=23% Similarity=0.251 Sum_probs=71.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--c---------------cEEEEEEEcC----cccHH----------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--F---------------DLVIWVKVSR----DANLE---------- 219 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f---------------~~~~wv~v~~----~~~~~---------- 219 (885)
.++.+++|+|+.|+|||||++.++....+..+. + ..+.++.-.. ..++.
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~ 103 (230)
T TIGR03410 24 PKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAAL 103 (230)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhc
Confidence 568999999999999999999998775432121 0 1122222110 00111
Q ss_pred -----HHHHHHHHHcCC-Cc--cc--cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCC-CCC
Q 045686 220 -----KIQESILRRFEI-PD--QM--WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQ-TGS 287 (885)
Q Consensus 220 -----~~~~~i~~~l~~-~~--~~--~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~-~gs 287 (885)
.....+++.++. .. .. ..-+..+...-.+.+.+..++-++++|++.+..|........ .+..... .|.
T Consensus 104 ~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~ 183 (230)
T TIGR03410 104 PRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGM 183 (230)
T ss_pred CcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCc
Confidence 111222333221 11 00 011223334445667777888999999998877654332111 1111222 378
Q ss_pred EEEEEcCChhHHhh
Q 045686 288 KIVFTTRSEEVCGE 301 (885)
Q Consensus 288 ~IivTTR~~~v~~~ 301 (885)
.||++|++.+.+..
T Consensus 184 tii~~sH~~~~~~~ 197 (230)
T TIGR03410 184 AILLVEQYLDFARE 197 (230)
T ss_pred EEEEEeCCHHHHHH
Confidence 89999999876554
No 390
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.98 E-value=0.023 Score=63.25 Aligned_cols=90 Identities=24% Similarity=0.251 Sum_probs=49.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcC-cccHHHHHHHHHHHcCCCccccCCCChhHHHHHHHH
Q 045686 172 NEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSR-DANLEKIQESILRRFEIPDQMWIGKDEDGRANEILS 250 (885)
Q Consensus 172 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 250 (885)
...+|+|+|++|+||||++..++...... .....+..++... .......+......++.... ...+...+...+.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~-~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~--~a~d~~~L~~aL~- 424 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQ-HAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVH--EADSAESLLDLLE- 424 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh-cCCCceEEEecccccccHHHHHHHhhcccCceeE--ecCcHHHHHHHHH-
Confidence 46899999999999999999988765321 1123344554322 11122233333444554332 1222333333333
Q ss_pred HhcCCCeEEEEecCCC
Q 045686 251 NLRGKKFVLLLDDVWE 266 (885)
Q Consensus 251 ~l~~k~~LlVLDdv~~ 266 (885)
.+. ..-+||+|....
T Consensus 425 ~l~-~~DLVLIDTaG~ 439 (559)
T PRK12727 425 RLR-DYKLVLIDTAGM 439 (559)
T ss_pred Hhc-cCCEEEecCCCc
Confidence 333 356888888753
No 391
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.98 E-value=0.0036 Score=64.05 Aligned_cols=131 Identities=17% Similarity=0.169 Sum_probs=75.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCc--------------cEEEEEEEcCc-c---cH--------------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDF--------------DLVIWVKVSRD-A---NL-------------- 218 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f--------------~~~~wv~v~~~-~---~~-------------- 218 (885)
.++.+++|+|..|+|||||++.++....+..+.. ..+.++.-... + ++
T Consensus 23 ~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~ 102 (235)
T cd03299 23 ERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKRKVD 102 (235)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHHHHHHHHcCCC
Confidence 4678999999999999999999988754432211 11222221110 0 11
Q ss_pred ----HHHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-ccccc-CCCCCE
Q 045686 219 ----EKIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDS-SQTGSK 288 (885)
Q Consensus 219 ----~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~-~~~gs~ 288 (885)
.....++++.+++.... ..-+..+...-.+.+.+..++-++++|+.....|........ .+... ...|..
T Consensus 103 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~t 182 (235)
T cd03299 103 KKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVT 182 (235)
T ss_pred HHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCE
Confidence 11123445555553210 012234455556778888889999999998876654332211 11111 223788
Q ss_pred EEEEcCChhHHhh
Q 045686 289 IVFTTRSEEVCGE 301 (885)
Q Consensus 289 IivTTR~~~v~~~ 301 (885)
||++|++.+.+..
T Consensus 183 ili~tH~~~~~~~ 195 (235)
T cd03299 183 VLHVTHDFEEAWA 195 (235)
T ss_pred EEEEecCHHHHHH
Confidence 9999998865443
No 392
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=96.98 E-value=0.0046 Score=63.86 Aligned_cols=128 Identities=26% Similarity=0.260 Sum_probs=71.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccC-----CCC--cc----------------EEEEEEEcCcc-----cH----
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDT-----GHD--FD----------------LVIWVKVSRDA-----NL---- 218 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~-----~~~--f~----------------~~~wv~v~~~~-----~~---- 218 (885)
.++.+++|+|+.|+|||||++.+.....+. .+. |+ .+.++. +.. ++
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~--q~~~~~~~tv~e~l 102 (247)
T TIGR00972 25 PKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVF--QKPNPFPMSIYDNI 102 (247)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEe--cCcccCCCCHHHHH
Confidence 578899999999999999999998765321 110 10 111211 110 00
Q ss_pred ---------------HHHHHHHHHHcCCC----cc--c-c-CCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccc
Q 045686 219 ---------------EKIQESILRRFEIP----DQ--M-W-IGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGV 275 (885)
Q Consensus 219 ---------------~~~~~~i~~~l~~~----~~--~-~-~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~ 275 (885)
......+++.+++. .. . . .-+..+...-.+.+.+..++-++++|+.....|......
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~ 182 (247)
T TIGR00972 103 AYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGK 182 (247)
T ss_pred HhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 01123344455553 10 0 0 112233444456777888889999999988766543311
Q ss_pred cc-cccccCCCCCEEEEEcCChhHHhh
Q 045686 276 SD-LLDDSSQTGSKIVFTTRSEEVCGE 301 (885)
Q Consensus 276 ~~-~l~~~~~~gs~IivTTR~~~v~~~ 301 (885)
.. .+..... +..||++|++.+.+..
T Consensus 183 l~~~l~~~~~-~~tiiivsH~~~~~~~ 208 (247)
T TIGR00972 183 IEELIQELKK-KYTIVIVTHNMQQAAR 208 (247)
T ss_pred HHHHHHHHHh-cCeEEEEecCHHHHHH
Confidence 11 1111122 4688999998875544
No 393
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=96.97 E-value=0.0049 Score=63.93 Aligned_cols=59 Identities=19% Similarity=0.177 Sum_probs=37.5
Q ss_pred hHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCCCCCEEEEEcCChhHHhh
Q 045686 242 DGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQTGSKIVFTTRSEEVCGE 301 (885)
Q Consensus 242 ~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~gs~IivTTR~~~v~~~ 301 (885)
+...-.+.+.+..++-+++||+.....|........ .+... ..|..||++|++.+....
T Consensus 154 q~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~~~tvii~tH~~~~~~~ 213 (253)
T PRK14242 154 QQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHEL-KARYTIIIVTHNMQQAAR 213 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-hcCCeEEEEEecHHHHHH
Confidence 344445677788888999999998876654331111 11112 235789999998866543
No 394
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=96.97 E-value=0.0042 Score=65.03 Aligned_cols=131 Identities=18% Similarity=0.196 Sum_probs=73.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--cc-----------------EEEEEEEcC----cccHHH-------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FD-----------------LVIWVKVSR----DANLEK------- 220 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~-----------------~~~wv~v~~----~~~~~~------- 220 (885)
..+.+++|+|+.|+|||||++.++....+..+. |+ .+.++.-.. ..++.+
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~ 110 (269)
T PRK11831 31 PRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLR 110 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHH
Confidence 567899999999999999999998775432111 11 122222110 011111
Q ss_pred ------------HHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-ccccc-
Q 045686 221 ------------IQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDS- 282 (885)
Q Consensus 221 ------------~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~- 282 (885)
...++++.+++.... ..-+..+...-.+.+.+..++-+++||+.....|........ .+...
T Consensus 111 ~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~ 190 (269)
T PRK11831 111 EHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELN 190 (269)
T ss_pred HccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHH
Confidence 112234455543210 011223334445677777888999999998877755432111 11112
Q ss_pred CCCCCEEEEEcCChhHHhh
Q 045686 283 SQTGSKIVFTTRSEEVCGE 301 (885)
Q Consensus 283 ~~~gs~IivTTR~~~v~~~ 301 (885)
...|..||++|++.+....
T Consensus 191 ~~~g~tiiivsH~~~~~~~ 209 (269)
T PRK11831 191 SALGVTCVVVSHDVPEVLS 209 (269)
T ss_pred HhcCcEEEEEecCHHHHHH
Confidence 2237889999999765544
No 395
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=96.97 E-value=0.0045 Score=66.50 Aligned_cols=132 Identities=17% Similarity=0.191 Sum_probs=75.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhcc----CCC--Ccc------------------EEEEEEEcC------cccH--
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRD----TGH--DFD------------------LVIWVKVSR------DANL-- 218 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~----~~~--~f~------------------~~~wv~v~~------~~~~-- 218 (885)
..+.+++|+|.+|+|||||++.+..-... ..+ .|+ .+.+|.-.. ...+
T Consensus 31 ~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~ 110 (326)
T PRK11022 31 KQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGF 110 (326)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHH
Confidence 57789999999999999999999886531 101 011 122222110 0011
Q ss_pred -----------------HHHHHHHHHHcCCCcc-----c--cCCCChhHHHHHHHHHhcCCCeEEEEecCCCcccccccc
Q 045686 219 -----------------EKIQESILRRFEIPDQ-----M--WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVG 274 (885)
Q Consensus 219 -----------------~~~~~~i~~~l~~~~~-----~--~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~ 274 (885)
.+...++++.+++... . ..-+..+...-.+...+..++-+||+|+..+..|.....
T Consensus 111 ~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~ 190 (326)
T PRK11022 111 QIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQA 190 (326)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHH
Confidence 1122345566666421 0 011223334445777888889999999998887654321
Q ss_pred ccc-cccc-cCCCCCEEEEEcCChhHHhhh
Q 045686 275 VSD-LLDD-SSQTGSKIVFTTRSEEVCGEM 302 (885)
Q Consensus 275 ~~~-~l~~-~~~~gs~IivTTR~~~v~~~~ 302 (885)
..+ .+.. ....|..||++|++.+++..+
T Consensus 191 ~il~lL~~l~~~~g~til~iTHdl~~~~~~ 220 (326)
T PRK11022 191 QIIELLLELQQKENMALVLITHDLALVAEA 220 (326)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 111 1111 123478999999998876544
No 396
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=96.97 E-value=0.0045 Score=72.12 Aligned_cols=58 Identities=22% Similarity=0.222 Sum_probs=38.3
Q ss_pred hHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCCCCCEEEEEcCChhHHhhh
Q 045686 242 DGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQTGSKIVFTTRSEEVCGEM 302 (885)
Q Consensus 242 ~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~gs~IivTTR~~~v~~~~ 302 (885)
+...-.+.+.+..++-+++||+..+..|........ .+. .. +..||++|++.+.+...
T Consensus 168 qkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~-~~--~~tviiisHd~~~~~~~ 226 (556)
T PRK11819 168 ERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLH-DY--PGTVVAVTHDRYFLDNV 226 (556)
T ss_pred HHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHH-hC--CCeEEEEeCCHHHHHhh
Confidence 334445677778888999999999887765442221 111 11 24799999998776554
No 397
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.96 E-value=0.004 Score=65.27 Aligned_cols=130 Identities=14% Similarity=0.167 Sum_probs=73.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--c--------------cEEEEEEEcC--cc---cH-----------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--F--------------DLVIWVKVSR--DA---NL----------- 218 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f--------------~~~~wv~v~~--~~---~~----------- 218 (885)
..+.+++|+|+.|+|||||++.++....+..+. + ..+.++.-.. .+ ++
T Consensus 33 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~ 112 (271)
T PRK13632 33 NEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK 112 (271)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc
Confidence 567899999999999999999998875432111 0 0122222110 00 11
Q ss_pred -------HHHHHHHHHHcCCCccc---c-CCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCCC-
Q 045686 219 -------EKIQESILRRFEIPDQM---W-IGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQT- 285 (885)
Q Consensus 219 -------~~~~~~i~~~l~~~~~~---~-~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~- 285 (885)
.....++++.+++.... . .-+..+...-.+.+.+..++-+++||+..+..|........ .+......
T Consensus 113 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~ 192 (271)
T PRK13632 113 KVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTR 192 (271)
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc
Confidence 01123445555553210 0 11223344445777888899999999999887765432211 11112222
Q ss_pred CCEEEEEcCChhHHh
Q 045686 286 GSKIVFTTRSEEVCG 300 (885)
Q Consensus 286 gs~IivTTR~~~v~~ 300 (885)
+..||++|++.+...
T Consensus 193 ~~tiii~sH~~~~~~ 207 (271)
T PRK13632 193 KKTLISITHDMDEAI 207 (271)
T ss_pred CcEEEEEEechhHHh
Confidence 478899998876554
No 398
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=96.96 E-value=0.0052 Score=62.52 Aligned_cols=135 Identities=19% Similarity=0.222 Sum_probs=73.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--c--------------cEEEEEEEcCcccH--HHH-----------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--F--------------DLVIWVKVSRDANL--EKI----------- 221 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f--------------~~~~wv~v~~~~~~--~~~----------- 221 (885)
.++.+++|+|+.|+|||||++.++....+..+. + ..+.++. +.... ..+
T Consensus 38 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~--q~~~l~~~tv~~nl~~~~~~~ 115 (226)
T cd03248 38 HPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVG--QEPVLFARSLQDNIAYGLQSC 115 (226)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhhEEEEe--cccHHHhhhHHHHhccccCCC
Confidence 578899999999999999999999875432221 0 0122221 11100 000
Q ss_pred -------------HHHHHHHc--CCCcc--c--cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccc
Q 045686 222 -------------QESILRRF--EIPDQ--M--WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDD 281 (885)
Q Consensus 222 -------------~~~i~~~l--~~~~~--~--~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~ 281 (885)
..++++.+ +.... . ..-+..+...-.+.+.+..++-++++|+.....|........ .+..
T Consensus 116 ~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 195 (226)
T cd03248 116 SFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYD 195 (226)
T ss_pred CHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 11223333 22210 0 011223334445677778889999999998876654332111 1111
Q ss_pred cCCCCCEEEEEcCChhHHhhhcccceeec
Q 045686 282 SSQTGSKIVFTTRSEEVCGEMGARRRFRV 310 (885)
Q Consensus 282 ~~~~gs~IivTTR~~~v~~~~~~~~~~~l 310 (885)
.. .+..||++|++.+.... .++.+.+
T Consensus 196 ~~-~~~tii~~sh~~~~~~~--~d~i~~l 221 (226)
T cd03248 196 WP-ERRTVLVIAHRLSTVER--ADQILVL 221 (226)
T ss_pred Hc-CCCEEEEEECCHHHHHh--CCEEEEe
Confidence 22 24689999999876642 4455544
No 399
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=96.96 E-value=0.0036 Score=65.46 Aligned_cols=131 Identities=18% Similarity=0.208 Sum_probs=75.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--cc--------------EEEEEEEcCc--c----cH----------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FD--------------LVIWVKVSRD--A----NL---------- 218 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~--------------~~~wv~v~~~--~----~~---------- 218 (885)
.++.+++|+|+.|+|||||.+.++....+..+. ++ .+.++.-... + ++
T Consensus 37 ~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~ 116 (267)
T PRK15112 37 REGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRL 116 (267)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHh
Confidence 567899999999999999999999876432121 10 1122211100 0 00
Q ss_pred ---------HHHHHHHHHHcCCCcc--c---cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-ccccc-
Q 045686 219 ---------EKIQESILRRFEIPDQ--M---WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDS- 282 (885)
Q Consensus 219 ---------~~~~~~i~~~l~~~~~--~---~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~- 282 (885)
.+...++++.+++... . ..-+..+...-.+.+.+..++-+++||++....|........ .+...
T Consensus 117 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~ 196 (267)
T PRK15112 117 NTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQ 196 (267)
T ss_pred ccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 0112345566666311 0 011223444445777888899999999999887765432211 11111
Q ss_pred CCCCCEEEEEcCChhHHhh
Q 045686 283 SQTGSKIVFTTRSEEVCGE 301 (885)
Q Consensus 283 ~~~gs~IivTTR~~~v~~~ 301 (885)
...|..||++|++.+....
T Consensus 197 ~~~g~tviivsH~~~~~~~ 215 (267)
T PRK15112 197 EKQGISYIYVTQHLGMMKH 215 (267)
T ss_pred HHcCcEEEEEeCCHHHHHH
Confidence 1237789999998876554
No 400
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=96.96 E-value=0.0027 Score=74.80 Aligned_cols=136 Identities=18% Similarity=0.192 Sum_probs=74.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--c--------------cEEEEEEE---------------c-CcccH
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--F--------------DLVIWVKV---------------S-RDANL 218 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f--------------~~~~wv~v---------------~-~~~~~ 218 (885)
.++..++|+|..|+|||||++.+.....+.++. + +.+.|+.- . .+.+.
T Consensus 359 ~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d 438 (588)
T PRK13657 359 KPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATD 438 (588)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCH
Confidence 678999999999999999999998776543221 1 12334321 0 01111
Q ss_pred HHHHHHHHHHcCCC---------cccc-----CCCC-hhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-ccccc
Q 045686 219 EKIQESILRRFEIP---------DQMW-----IGKD-EDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDS 282 (885)
Q Consensus 219 ~~~~~~i~~~l~~~---------~~~~-----~~~~-~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~ 282 (885)
+++ ...++..+.. .+.. ..-+ .+...-.+.+.+-.++-++|||++.+..|........ .+. .
T Consensus 439 ~~i-~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~-~ 516 (588)
T PRK13657 439 EEM-RAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALD-E 516 (588)
T ss_pred HHH-HHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHH-H
Confidence 221 1222222211 0000 0112 2333334667777788899999999877654332111 111 2
Q ss_pred CCCCCEEEEEcCChhHHhhhcccceeec
Q 045686 283 SQTGSKIVFTTRSEEVCGEMGARRRFRV 310 (885)
Q Consensus 283 ~~~gs~IivTTR~~~v~~~~~~~~~~~l 310 (885)
..++..||++|++...... .++++.+
T Consensus 517 ~~~~~tvIiitHr~~~~~~--~D~ii~l 542 (588)
T PRK13657 517 LMKGRTTFIIAHRLSTVRN--ADRILVF 542 (588)
T ss_pred HhcCCEEEEEEecHHHHHh--CCEEEEE
Confidence 2246778888888766553 3445555
No 401
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.96 E-value=0.003 Score=63.97 Aligned_cols=131 Identities=21% Similarity=0.249 Sum_probs=74.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCC--CccEEEEEEEcCcc----------------cHHHHHHH--------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGH--DFDLVIWVKVSRDA----------------NLEKIQES-------- 224 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~--~f~~~~wv~v~~~~----------------~~~~~~~~-------- 224 (885)
..+.++++.|++|+|||||.+.++.-..+..+ .|+...|..+++.. .--.+...
T Consensus 26 ~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~ 105 (345)
T COG1118 26 KSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVR 105 (345)
T ss_pred cCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEechhhcccchHHhhhhhccccc
Confidence 46799999999999999999999987765433 35556665544310 00011222
Q ss_pred ---------------HHHHcCCCcc--c--cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccc-cccccccc-cC
Q 045686 225 ---------------ILRRFEIPDQ--M--WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKV-GVSDLLDD-SS 283 (885)
Q Consensus 225 ---------------i~~~l~~~~~--~--~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~-~~~~~l~~-~~ 283 (885)
+++.+.+..- . ..-+..+...-.+.+.+.-.+-+|.||+.....|.... .....++. ..
T Consensus 106 ~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~ 185 (345)
T COG1118 106 KERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHD 185 (345)
T ss_pred ccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHH
Confidence 2222221110 0 01123334444577788888889999999776543211 00001111 23
Q ss_pred CCCCEEEEEcCChhHHhh
Q 045686 284 QTGSKIVFTTRSEEVCGE 301 (885)
Q Consensus 284 ~~gs~IivTTR~~~v~~~ 301 (885)
.-|..++++|++.+-+..
T Consensus 186 ~~~~ttvfVTHD~eea~~ 203 (345)
T COG1118 186 RLGVTTVFVTHDQEEALE 203 (345)
T ss_pred hhCceEEEEeCCHHHHHh
Confidence 347889999999754443
No 402
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.94 E-value=0.0055 Score=64.70 Aligned_cols=59 Identities=17% Similarity=0.183 Sum_probs=37.5
Q ss_pred hHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCCCCCEEEEEcCChhHHhh
Q 045686 242 DGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQTGSKIVFTTRSEEVCGE 301 (885)
Q Consensus 242 ~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~gs~IivTTR~~~v~~~ 301 (885)
+...-.+.+.+..++-++|||+.....|........ .+.... .+..||++|++.+....
T Consensus 187 q~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~-~~~tvIivsH~~~~~~~ 246 (286)
T PRK14275 187 QQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELR-GSYTIMIVTHNMQQASR 246 (286)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHH
Confidence 344445677788888999999998877654332111 111122 24689999998776544
No 403
>PRK04296 thymidine kinase; Provisional
Probab=96.94 E-value=0.00096 Score=65.55 Aligned_cols=116 Identities=14% Similarity=0.037 Sum_probs=63.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHHHcCCCccccCCCChhHHHHHHHHHh
Q 045686 173 EKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILRRFEIPDQMWIGKDEDGRANEILSNL 252 (885)
Q Consensus 173 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 252 (885)
..++.|+|+.|.||||+|..++.+... . ...++.+. ..++.......++.++|............+....+.+ .
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~--~-g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~ 75 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEE--R-GMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-E 75 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHH--c-CCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-h
Confidence 467889999999999999999887742 2 22333332 1112222233456666654322111233444444444 3
Q ss_pred cCCCeEEEEecCCCccccccccccccccccCCCCCEEEEEcCChh
Q 045686 253 RGKKFVLLLDDVWERLDLSKVGVSDLLDDSSQTGSKIVFTTRSEE 297 (885)
Q Consensus 253 ~~k~~LlVLDdv~~~~~~~~~~~~~~l~~~~~~gs~IivTTR~~~ 297 (885)
.++.-+||+|++.... .+.+..... .....|..||+|.++.+
T Consensus 76 ~~~~dvviIDEaq~l~-~~~v~~l~~--~l~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 76 GEKIDCVLIDEAQFLD-KEQVVQLAE--VLDDLGIPVICYGLDTD 117 (190)
T ss_pred CCCCCEEEEEccccCC-HHHHHHHHH--HHHHcCCeEEEEecCcc
Confidence 3355699999994321 111110001 02456889999999854
No 404
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.0029 Score=71.24 Aligned_cols=160 Identities=18% Similarity=0.221 Sum_probs=87.2
Q ss_pred CCccchhHHHHHHHHHhh------cCCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHH
Q 045686 152 GKTVGLDSIISEVWRCIE------DHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESI 225 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~------~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 225 (885)
.+-+|.++-+++|+++|. .-.+++++++||+|+|||+|++.++.... +.|- -+.++.-.|-.++-
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~---Rkfv---R~sLGGvrDEAEIR--- 393 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALG---RKFV---RISLGGVRDEAEIR--- 393 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhC---CCEE---EEecCccccHHHhc---
Confidence 456799999999999983 24678999999999999999999999873 4442 23333333333321
Q ss_pred HHHcCCCccccCCCChhHHHHHHHHHhcCCCeEEEEecCCCcc-----ccccccccccccc-----------cCCCCCEE
Q 045686 226 LRRFEIPDQMWIGKDEDGRANEILSNLRGKKFVLLLDDVWERL-----DLSKVGVSDLLDD-----------SSQTGSKI 289 (885)
Q Consensus 226 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~-----~~~~~~~~~~l~~-----------~~~~gs~I 289 (885)
.......+.-+......+.+ .+.+.=+++||+++... |.........=|+ ..-.=|.|
T Consensus 394 -----GHRRTYIGamPGrIiQ~mkk-a~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~V 467 (782)
T COG0466 394 -----GHRRTYIGAMPGKIIQGMKK-AGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKV 467 (782)
T ss_pred -----cccccccccCChHHHHHHHH-hCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhhe
Confidence 11111122222223333322 23466788999986421 1110000000000 00012445
Q ss_pred EE-EcCC-hh-HH-hhhcccceeeccCCChHHHHHHHHHHh
Q 045686 290 VF-TTRS-EE-VC-GEMGARRRFRVECLSPEAALDLFRYKV 326 (885)
Q Consensus 290 iv-TTR~-~~-v~-~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 326 (885)
++ +|-| -+ +. ..+.-..++++.+.+++|-.++-+++.
T Consensus 468 mFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 468 MFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 54 3433 21 21 112334678888888888887776654
No 405
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=96.93 E-value=0.0042 Score=67.73 Aligned_cols=130 Identities=23% Similarity=0.220 Sum_probs=76.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--ccE------------EEEEEEcCcc------c-------------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FDL------------VIWVKVSRDA------N------------- 217 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~~------------~~wv~v~~~~------~------------- 217 (885)
..+.+++|+|++|+|||||.+.++.-.....+. |+. +.++ .+.+ +
T Consensus 38 ~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v--fQ~~~lfp~ltv~eNi~~~l~~~~ 115 (375)
T PRK09452 38 NNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTV--FQSYALFPHMTVFENVAFGLRMQK 115 (375)
T ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEE--ecCcccCCCCCHHHHHHHHHhhcC
Confidence 567899999999999999999999866432111 111 1111 1111 0
Q ss_pred -----HHHHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCcccccccccc-ccccc-cCCCC
Q 045686 218 -----LEKIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVS-DLLDD-SSQTG 286 (885)
Q Consensus 218 -----~~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~-~~l~~-~~~~g 286 (885)
...-..++++.+++.... ..-+..+...-.+.+.+..++-+++||+.....|....... ..+.. ....|
T Consensus 116 ~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g 195 (375)
T PRK09452 116 TPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLG 195 (375)
T ss_pred CCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcC
Confidence 011234456666664311 01123444555678888888999999999887665322111 11111 12347
Q ss_pred CEEEEEcCChhHHhhh
Q 045686 287 SKIVFTTRSEEVCGEM 302 (885)
Q Consensus 287 s~IivTTR~~~v~~~~ 302 (885)
..||++|++.+.+..+
T Consensus 196 ~tiI~vTHd~~ea~~l 211 (375)
T PRK09452 196 ITFVFVTHDQEEALTM 211 (375)
T ss_pred CEEEEEeCCHHHHHHh
Confidence 8999999998765544
No 406
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.93 E-value=0.0067 Score=62.98 Aligned_cols=60 Identities=20% Similarity=0.240 Sum_probs=37.9
Q ss_pred hHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCCCCCEEEEEcCChhHHhhh
Q 045686 242 DGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQTGSKIVFTTRSEEVCGEM 302 (885)
Q Consensus 242 ~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~gs~IivTTR~~~v~~~~ 302 (885)
+...-.+.+.+..++-+++||+.....|........ .+... ..+..||++|++.+.+...
T Consensus 155 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~~tvii~sH~~~~~~~~ 215 (254)
T PRK14273 155 QQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINL-KESYTIIIVTHNMQQAGRI 215 (254)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHh
Confidence 334445667777788899999998876654331111 11112 2357899999998765543
No 407
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.92 E-value=0.0031 Score=66.43 Aligned_cols=138 Identities=18% Similarity=0.154 Sum_probs=77.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCC---CC--c--------------cEEEEEEEcC-----cccHH-------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTG---HD--F--------------DLVIWVKVSR-----DANLE------- 219 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~---~~--f--------------~~~~wv~v~~-----~~~~~------- 219 (885)
.++.+++|+|+.|+|||||++.++....... +. + ..+.++.-.. ..++.
T Consensus 31 ~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~ 110 (282)
T PRK13640 31 PRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGL 110 (282)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhH
Confidence 5678999999999999999999998753321 10 0 0122221110 00110
Q ss_pred -----------HHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccC
Q 045686 220 -----------KIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSS 283 (885)
Q Consensus 220 -----------~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~ 283 (885)
+...++++.+++.... ..-+..+...-.+.+.+..++-++++|+.....|........ .+....
T Consensus 111 ~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~ 190 (282)
T PRK13640 111 ENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLK 190 (282)
T ss_pred HhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHH
Confidence 1123445555553210 011223344445777888899999999999887755432111 111122
Q ss_pred -CCCCEEEEEcCChhHHhhhcccceeec
Q 045686 284 -QTGSKIVFTTRSEEVCGEMGARRRFRV 310 (885)
Q Consensus 284 -~~gs~IivTTR~~~v~~~~~~~~~~~l 310 (885)
..|..||++|++.+... . .++.+.+
T Consensus 191 ~~~g~tvli~tH~~~~~~-~-~d~i~~l 216 (282)
T PRK13640 191 KKNNLTVISITHDIDEAN-M-ADQVLVL 216 (282)
T ss_pred HhcCCEEEEEecCHHHHH-h-CCEEEEE
Confidence 23789999999987664 2 3444443
No 408
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=96.92 E-value=0.0058 Score=63.83 Aligned_cols=131 Identities=20% Similarity=0.195 Sum_probs=74.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--c-----------------cEEEEEEEcC------cccHH------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--F-----------------DLVIWVKVSR------DANLE------ 219 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f-----------------~~~~wv~v~~------~~~~~------ 219 (885)
.++.+++|+|++|+|||||++.++....+..+. + ..+.|+.-.. ..++.
T Consensus 35 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~ 114 (265)
T TIGR02769 35 EEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEP 114 (265)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHH
Confidence 568899999999999999999998875432111 1 0122322110 00110
Q ss_pred -------------HHHHHHHHHcCCCcc--c---cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-ccc
Q 045686 220 -------------KIQESILRRFEIPDQ--M---WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLD 280 (885)
Q Consensus 220 -------------~~~~~i~~~l~~~~~--~---~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~ 280 (885)
....++++.+++... . ..-+..+...-.+.+.+..++-+++||+.....|........ .+.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~ 194 (265)
T TIGR02769 115 LRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLR 194 (265)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 122345566665311 0 011223444455777788888999999998877654321111 111
Q ss_pred ccC-CCCCEEEEEcCChhHHhh
Q 045686 281 DSS-QTGSKIVFTTRSEEVCGE 301 (885)
Q Consensus 281 ~~~-~~gs~IivTTR~~~v~~~ 301 (885)
... ..|..||++|++.+.+..
T Consensus 195 ~~~~~~g~tiiivsH~~~~~~~ 216 (265)
T TIGR02769 195 KLQQAFGTAYLFITHDLRLVQS 216 (265)
T ss_pred HHHHhcCcEEEEEeCCHHHHHH
Confidence 112 237789999999876553
No 409
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=96.92 E-value=0.0048 Score=71.26 Aligned_cols=132 Identities=17% Similarity=0.156 Sum_probs=76.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--c---------------cEEEEEEEc----Cccc------------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--F---------------DLVIWVKVS----RDAN------------ 217 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f---------------~~~~wv~v~----~~~~------------ 217 (885)
..+.+++|+|+.|+|||||++.++.-..+..+. + ..+.++.-. ...+
T Consensus 29 ~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~ 108 (510)
T PRK09700 29 YPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLT 108 (510)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhccccc
Confidence 567899999999999999999998765321111 1 012222100 0000
Q ss_pred -------------HHHHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cc
Q 045686 218 -------------LEKIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LL 279 (885)
Q Consensus 218 -------------~~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l 279 (885)
......++++.+++.... ..-+..+...-.+.+.+..++-+++||+..+..|........ .+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l 188 (510)
T PRK09700 109 KKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIM 188 (510)
T ss_pred cccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH
Confidence 111234455666664211 011223444556778888899999999999887765432211 11
Q ss_pred cccCCCCCEEEEEcCChhHHhhh
Q 045686 280 DDSSQTGSKIVFTTRSEEVCGEM 302 (885)
Q Consensus 280 ~~~~~~gs~IivTTR~~~v~~~~ 302 (885)
......|..||++|++.+.+...
T Consensus 189 ~~l~~~g~tiiivsHd~~~~~~~ 211 (510)
T PRK09700 189 NQLRKEGTAIVYISHKLAEIRRI 211 (510)
T ss_pred HHHHhCCCEEEEEeCCHHHHHHh
Confidence 11223478899999998766544
No 410
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=96.92 E-value=0.0047 Score=64.57 Aligned_cols=131 Identities=19% Similarity=0.187 Sum_probs=75.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--cc-----------------EEEEEEEcC------cccHH------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FD-----------------LVIWVKVSR------DANLE------ 219 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~-----------------~~~wv~v~~------~~~~~------ 219 (885)
.++.+++|+|+.|+|||||++.++.......+. ++ .+.|+.-.. ..+..
T Consensus 36 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~ 115 (268)
T PRK10419 36 KSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREP 115 (268)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHH
Confidence 567899999999999999999998865432111 10 122221110 00110
Q ss_pred -------------HHHHHHHHHcCCCcc--c---cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-ccc
Q 045686 220 -------------KIQESILRRFEIPDQ--M---WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLD 280 (885)
Q Consensus 220 -------------~~~~~i~~~l~~~~~--~---~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~ 280 (885)
....+++..+++... . ..-+..+...-.+.+.+..++-+++||+.....|........ .+.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~ 195 (268)
T PRK10419 116 LRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLK 195 (268)
T ss_pred HHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHH
Confidence 123455666665321 0 112234445556778888899999999998877654321111 111
Q ss_pred cc-CCCCCEEEEEcCChhHHhh
Q 045686 281 DS-SQTGSKIVFTTRSEEVCGE 301 (885)
Q Consensus 281 ~~-~~~gs~IivTTR~~~v~~~ 301 (885)
.. ...|..||++|++.+....
T Consensus 196 ~~~~~~~~tiiivsH~~~~i~~ 217 (268)
T PRK10419 196 KLQQQFGTACLFITHDLRLVER 217 (268)
T ss_pred HHHHHcCcEEEEEECCHHHHHH
Confidence 11 2237889999999765543
No 411
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.91 E-value=0.005 Score=63.90 Aligned_cols=59 Identities=19% Similarity=0.231 Sum_probs=38.2
Q ss_pred hHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCCCCCEEEEEcCChhHHhh
Q 045686 242 DGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQTGSKIVFTTRSEEVCGE 301 (885)
Q Consensus 242 ~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~gs~IivTTR~~~v~~~ 301 (885)
+...-.+.+.+..++-++++|+.....|........ .+... ..+..||++|++.+.+..
T Consensus 158 ~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~-~~~~tiilvsh~~~~~~~ 217 (257)
T PRK14246 158 QQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITEL-KNEIAIVIVSHNPQQVAR 217 (257)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHH-hcCcEEEEEECCHHHHHH
Confidence 344445777888889999999998876654331111 11112 235789999999876644
No 412
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.91 E-value=0.0055 Score=64.91 Aligned_cols=131 Identities=17% Similarity=0.166 Sum_probs=73.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--cc-------------------EEEEEEEcCc---c--cHH-----
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FD-------------------LVIWVKVSRD---A--NLE----- 219 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~-------------------~~~wv~v~~~---~--~~~----- 219 (885)
..+.+++|+|+.|+|||||++.++....+..+. ++ .+.++.-... + ++.
T Consensus 35 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~ 114 (289)
T PRK13645 35 KKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAF 114 (289)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccHHHHhccEEEEEeCcchhhhhhHHHHHHHH
Confidence 567899999999999999999998775432121 10 1222221110 0 110
Q ss_pred -------------HHHHHHHHHcCCCcc--c---cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-ccc
Q 045686 220 -------------KIQESILRRFEIPDQ--M---WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLD 280 (885)
Q Consensus 220 -------------~~~~~i~~~l~~~~~--~---~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~ 280 (885)
....++++.++++.. . ..-+..+...-.+.+.+..++-+++||+.....|........ .+.
T Consensus 115 ~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~ 194 (289)
T PRK13645 115 GPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFE 194 (289)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 011234444454211 0 011223334445677777888899999998887765432211 111
Q ss_pred cc-CCCCCEEEEEcCChhHHhh
Q 045686 281 DS-SQTGSKIVFTTRSEEVCGE 301 (885)
Q Consensus 281 ~~-~~~gs~IivTTR~~~v~~~ 301 (885)
.. ...|..||++|++.+.+..
T Consensus 195 ~~~~~~~~tiiiisH~~~~~~~ 216 (289)
T PRK13645 195 RLNKEYKKRIIMVTHNMDQVLR 216 (289)
T ss_pred HHHHhcCCEEEEEecCHHHHHH
Confidence 11 2237889999999875543
No 413
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.90 E-value=0.0041 Score=65.59 Aligned_cols=131 Identities=23% Similarity=0.231 Sum_probs=74.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--c----------------cEEEEEEEcC--c-c--cH---------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--F----------------DLVIWVKVSR--D-A--NL--------- 218 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f----------------~~~~wv~v~~--~-~--~~--------- 218 (885)
..+.+++|+|+.|+|||||++.++....+..+. + ..+.++.-.. . + ++
T Consensus 30 ~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~ 109 (283)
T PRK13636 30 KKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAV 109 (283)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHH
Confidence 567899999999999999999998775432121 0 0122222110 0 0 00
Q ss_pred ---------HHHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-ccccc-C
Q 045686 219 ---------EKIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDS-S 283 (885)
Q Consensus 219 ---------~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~-~ 283 (885)
......+++.+++.... ..-+..+...-.+.+.+..++-+++||++....|........ .+... .
T Consensus 110 ~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~ 189 (283)
T PRK13636 110 NLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQK 189 (283)
T ss_pred HcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH
Confidence 11123344455543210 011223444445777888889999999999887765432111 11112 2
Q ss_pred CCCCEEEEEcCChhHHhh
Q 045686 284 QTGSKIVFTTRSEEVCGE 301 (885)
Q Consensus 284 ~~gs~IivTTR~~~v~~~ 301 (885)
..|..||++|++.+....
T Consensus 190 ~~g~tillvsH~~~~~~~ 207 (283)
T PRK13636 190 ELGLTIIIATHDIDIVPL 207 (283)
T ss_pred hCCCEEEEEecCHHHHHH
Confidence 237899999999776543
No 414
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.90 E-value=0.019 Score=69.20 Aligned_cols=174 Identities=17% Similarity=0.251 Sum_probs=95.4
Q ss_pred CCccchhHHHHHHHHHhhc-------------CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccH
Q 045686 152 GKTVGLDSIISEVWRCIED-------------HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANL 218 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~-------------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 218 (885)
.++.|.+..++.|.+.+.- ...+-+.++|++|+|||++|+.+++... ..| +.+..
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~---~~f-----i~v~~---- 520 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESG---ANF-----IAVRG---- 520 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC---CCE-----EEEeh----
Confidence 3466888888777776521 2345578899999999999999998763 222 22221
Q ss_pred HHHHHHHHHHcCCCccccCCCChhHHHHHHHHHhcCCCeEEEEecCCCcccc----------ccccccc--cccc-cCCC
Q 045686 219 EKIQESILRRFEIPDQMWIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDL----------SKVGVSD--LLDD-SSQT 285 (885)
Q Consensus 219 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~----------~~~~~~~--~l~~-~~~~ 285 (885)
.+ ++... .+.+...+.......-...+.+|++|+++....- ..+...+ .+.. ....
T Consensus 521 ~~----l~~~~-------vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~ 589 (733)
T TIGR01243 521 PE----ILSKW-------VGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELS 589 (733)
T ss_pred HH----Hhhcc-------cCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCC
Confidence 11 11110 1222222222233333456799999998642100 0000000 0000 1223
Q ss_pred CCEEEEEcCChhHHhh--h---cccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCch
Q 045686 286 GSKIVFTTRSEEVCGE--M---GARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLP 352 (885)
Q Consensus 286 gs~IivTTR~~~v~~~--~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP 352 (885)
+.-||.||...+.... + .-...+.+...+.++-.++|+..........+.+ ...+++.+.|.-
T Consensus 590 ~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 590 NVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVD----LEELAEMTEGYT 657 (733)
T ss_pred CEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHcCCCC
Confidence 4456667765543221 1 2346788999999999999987664433222233 456777887754
No 415
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=96.90 E-value=0.0048 Score=68.61 Aligned_cols=134 Identities=22% Similarity=0.257 Sum_probs=80.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEE----------------------EcCcc--------c---
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVK----------------------VSRDA--------N--- 217 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~----------------------v~~~~--------~--- 217 (885)
.++.+++|+|.+|+||||+|..+..-.........+.+... +.|++ .
T Consensus 33 ~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~ 112 (539)
T COG1123 33 EPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGD 112 (539)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchhhcCchhhHHH
Confidence 57899999999999999999999876642211111211110 11110 1
Q ss_pred ----------------HHHHHHHHHHHcCCCccccC------CCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccc
Q 045686 218 ----------------LEKIQESILRRFEIPDQMWI------GKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGV 275 (885)
Q Consensus 218 ----------------~~~~~~~i~~~l~~~~~~~~------~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~ 275 (885)
..+-..++++..+++.+... -+..+.....+...+..++-|||.|+..+..|...-..
T Consensus 113 Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~q 192 (539)
T COG1123 113 QIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQ 192 (539)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHH
Confidence 12223455666666553211 12233444456778889999999999988766432211
Q ss_pred cc-cccc-cCCCCCEEEEEcCChhHHhhhcc
Q 045686 276 SD-LLDD-SSQTGSKIVFTTRSEEVCGEMGA 304 (885)
Q Consensus 276 ~~-~l~~-~~~~gs~IivTTR~~~v~~~~~~ 304 (885)
.+ .+.+ ....|..+|++|++..|...+.+
T Consensus 193 IL~llk~l~~e~g~a~l~ITHDl~Vva~~aD 223 (539)
T COG1123 193 ILDLLKDLQRELGMAVLFITHDLGVVAELAD 223 (539)
T ss_pred HHHHHHHHHHHcCcEEEEEcCCHHHHHHhcC
Confidence 11 1111 34568999999999999877644
No 416
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=96.90 E-value=0.0067 Score=63.16 Aligned_cols=60 Identities=20% Similarity=0.230 Sum_probs=38.3
Q ss_pred hhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCCCCCEEEEEcCChhHHhh
Q 045686 241 EDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQTGSKIVFTTRSEEVCGE 301 (885)
Q Consensus 241 ~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~gs~IivTTR~~~v~~~ 301 (885)
.+...-.+.+.+..++-++++|+.....|........ .+... ..+..||++|++.+....
T Consensus 160 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~-~~~~tiii~sH~~~~~~~ 220 (260)
T PRK10744 160 GQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITEL-KQDYTVVIVTHNMQQAAR 220 (260)
T ss_pred HHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHH-hcCCeEEEEeCCHHHHHH
Confidence 3444455777888889999999998877654332111 11112 235689999998876543
No 417
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=96.90 E-value=0.0027 Score=62.41 Aligned_cols=102 Identities=24% Similarity=0.236 Sum_probs=61.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCC-------C-------ccE---EEEEE-----------------EcC--
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGH-------D-------FDL---VIWVK-----------------VSR-- 214 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~-------~-------f~~---~~wv~-----------------v~~-- 214 (885)
+...--+|+|+.|+|||||.+.+..++-+..+ . |+. +-||+ +|.
T Consensus 55 ~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~ 134 (257)
T COG1119 55 NPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFF 134 (257)
T ss_pred cCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhCccCHHHHhhcccccccceeeeeccc
Confidence 44566789999999999999999877643100 0 110 11111 111
Q ss_pred --------ccc--HHHHHHHHHHHcCCCccc---cC-CCChhHHHHHHHHHhcCCCeEEEEecCCCcccccc
Q 045686 215 --------DAN--LEKIQESILRRFEIPDQM---WI-GKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSK 272 (885)
Q Consensus 215 --------~~~--~~~~~~~i~~~l~~~~~~---~~-~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~ 272 (885)
..+ .......+++.+|...-. +. -+..+.+..-+.+.+..++-|||||+.-+..|...
T Consensus 135 ~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~ 206 (257)
T COG1119 135 ASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIA 206 (257)
T ss_pred ccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHH
Confidence 111 123345667777665311 11 12344555567889999999999999988766543
No 418
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=96.89 E-value=0.005 Score=71.43 Aligned_cols=129 Identities=17% Similarity=0.259 Sum_probs=76.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--cc---EEEEEEEcC------cccHH-------------HHHHHHH
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FD---LVIWVKVSR------DANLE-------------KIQESIL 226 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~---~~~wv~v~~------~~~~~-------------~~~~~i~ 226 (885)
..+.+++|+|+.|+|||||++.++....+..+. |+ .+.++.-.. ...+. ....+++
T Consensus 343 ~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l 422 (530)
T PRK15064 343 EAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTL 422 (530)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHH
Confidence 567899999999999999999999875432221 11 122322110 01111 1233455
Q ss_pred HHcCCCcc--c---cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCCCCCEEEEEcCChhHHh
Q 045686 227 RRFEIPDQ--M---WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQTGSKIVFTTRSEEVCG 300 (885)
Q Consensus 227 ~~l~~~~~--~---~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~gs~IivTTR~~~v~~ 300 (885)
+.+++... . ..-+..+...-.+.+.+..++-+++||+..+..|........ .+. .. +..||++|++.+.+.
T Consensus 423 ~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~-~~--~~tvi~vsHd~~~~~ 499 (530)
T PRK15064 423 GRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALE-KY--EGTLIFVSHDREFVS 499 (530)
T ss_pred HHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHH-HC--CCEEEEEeCCHHHHH
Confidence 66665311 0 111233445556778888899999999999887765432211 111 11 348999999988766
Q ss_pred hh
Q 045686 301 EM 302 (885)
Q Consensus 301 ~~ 302 (885)
..
T Consensus 500 ~~ 501 (530)
T PRK15064 500 SL 501 (530)
T ss_pred Hh
Confidence 54
No 419
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=96.88 E-value=0.0019 Score=70.27 Aligned_cols=58 Identities=19% Similarity=0.188 Sum_probs=38.0
Q ss_pred HHHHHHHHHhcCCCeEEEEecCCCccccccccccccccccCCCCC-EEEEEcCChhHHhhh
Q 045686 243 GRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSDLLDDSSQTGS-KIVFTTRSEEVCGEM 302 (885)
Q Consensus 243 ~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~~l~~~~~~gs-~IivTTR~~~v~~~~ 302 (885)
.+...|.+.|-.++.||.||+..+..|++++...-.. ...... .++|++|+++....+
T Consensus 227 rmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~--L~k~d~~~lVi~sh~QDfln~v 285 (614)
T KOG0927|consen 227 RMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEY--LAKYDRIILVIVSHSQDFLNGV 285 (614)
T ss_pred HHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHH--HHhccCceEEEEecchhhhhhH
Confidence 3444566777789999999999999887765221110 011122 789999998765544
No 420
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=96.88 E-value=0.0064 Score=66.46 Aligned_cols=131 Identities=19% Similarity=0.205 Sum_probs=78.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--ccE------------EEEEEEcCcc------c-------------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FDL------------VIWVKVSRDA------N------------- 217 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~~------------~~wv~v~~~~------~------------- 217 (885)
..+.+++|+|++|+|||||.+.++.-.....+. ++. +.++. +++ +
T Consensus 43 ~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~vf--Q~~~lfp~ltv~eNi~~~l~~~~ 120 (377)
T PRK11607 43 YKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMF--QSYALFPHMTVEQNIAFGLKQDK 120 (377)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEe--CCCccCCCCCHHHHHHHHHHHcC
Confidence 567899999999999999999999765432111 111 12221 111 0
Q ss_pred -----HHHHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccc-cCCCC
Q 045686 218 -----LEKIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDD-SSQTG 286 (885)
Q Consensus 218 -----~~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~-~~~~g 286 (885)
..+-..++++.+++.... ..-+..+...-.|.+.+..++-+|+||+.....|........ .+.. ....|
T Consensus 121 ~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g 200 (377)
T PRK11607 121 LPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVG 200 (377)
T ss_pred CCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 112234566666664311 112334455556888889999999999998876654321110 0000 12347
Q ss_pred CEEEEEcCChhHHhhhc
Q 045686 287 SKIVFTTRSEEVCGEMG 303 (885)
Q Consensus 287 s~IivTTR~~~v~~~~~ 303 (885)
..+|++|++.+.+..+.
T Consensus 201 ~tii~vTHd~~ea~~la 217 (377)
T PRK11607 201 VTCVMVTHDQEEAMTMA 217 (377)
T ss_pred CEEEEEcCCHHHHHHhC
Confidence 89999999987665543
No 421
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=96.88 E-value=0.0051 Score=67.52 Aligned_cols=132 Identities=17% Similarity=0.178 Sum_probs=76.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--cc------------------EEEEEEEcC----cccH--------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FD------------------LVIWVKVSR----DANL-------- 218 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~------------------~~~wv~v~~----~~~~-------- 218 (885)
..+.+++|+|+.|+|||||.+.++.-..+..+. |+ .+.++.-.. ..++
T Consensus 52 ~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~ 131 (400)
T PRK10070 52 EEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGM 131 (400)
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHH
Confidence 567899999999999999999998876432221 10 122222110 0011
Q ss_pred ----------HHHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-ccccc-
Q 045686 219 ----------EKIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDS- 282 (885)
Q Consensus 219 ----------~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~- 282 (885)
.....++++.+++.... ..-+..+...-.+.+.+..++-++++|+.....|........ .+...
T Consensus 132 ~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~ 211 (400)
T PRK10070 132 ELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQ 211 (400)
T ss_pred HhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHH
Confidence 11223456666664311 011233445556778888899999999998877654331111 11111
Q ss_pred CCCCCEEEEEcCChhHHhhh
Q 045686 283 SQTGSKIVFTTRSEEVCGEM 302 (885)
Q Consensus 283 ~~~gs~IivTTR~~~v~~~~ 302 (885)
...|..||++|++.+.+..+
T Consensus 212 ~~~g~TIIivTHd~~~~~~~ 231 (400)
T PRK10070 212 AKHQRTIVFISHDLDEAMRI 231 (400)
T ss_pred HHCCCeEEEEECCHHHHHHh
Confidence 22477899999998765543
No 422
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=96.88 E-value=0.004 Score=71.66 Aligned_cols=132 Identities=19% Similarity=0.292 Sum_probs=76.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--cc---------------EEEEEEEcC-------cccH--------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FD---------------LVIWVKVSR-------DANL-------- 218 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~---------------~~~wv~v~~-------~~~~-------- 218 (885)
..+.+++|+|+.|+|||||.+.++....+..+. ++ .+.|+.-.. ..++
T Consensus 276 ~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~ 355 (501)
T PRK10762 276 RKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTA 355 (501)
T ss_pred cCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhh
Confidence 567899999999999999999998765321111 10 122221110 0001
Q ss_pred ----------------HHHHHHHHHHcCCC-cc-c---cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc
Q 045686 219 ----------------EKIQESILRRFEIP-DQ-M---WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD 277 (885)
Q Consensus 219 ----------------~~~~~~i~~~l~~~-~~-~---~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~ 277 (885)
.....++++.+++. .. . ..-+..+...-.+.+.+..++-+++||+..+..|........
T Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~ 435 (501)
T PRK10762 356 LRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIY 435 (501)
T ss_pred hhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHH
Confidence 11234556666663 11 1 011234444556777888889999999999887765431111
Q ss_pred -cccccCCCCCEEEEEcCChhHHhhh
Q 045686 278 -LLDDSSQTGSKIVFTTRSEEVCGEM 302 (885)
Q Consensus 278 -~l~~~~~~gs~IivTTR~~~v~~~~ 302 (885)
.+......|..||++|++.+.+..+
T Consensus 436 ~~l~~~~~~g~tviivtHd~~~~~~~ 461 (501)
T PRK10762 436 QLINQFKAEGLSIILVSSEMPEVLGM 461 (501)
T ss_pred HHHHHHHHCCCEEEEEcCCHHHHHhh
Confidence 1111223478899999997765543
No 423
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=96.87 E-value=0.0028 Score=68.72 Aligned_cols=131 Identities=21% Similarity=0.234 Sum_probs=77.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--cc------------EEEEEEEcCcc--------------------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FD------------LVIWVKVSRDA-------------------- 216 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~------------~~~wv~v~~~~-------------------- 216 (885)
..+.+++|+|++|+|||||.+.++.-..+..+. |+ .+.++. +.+
T Consensus 26 ~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~--Q~~~l~p~~tv~eni~~~~~~~~ 103 (353)
T PRK10851 26 PSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVF--QHYALFRHMTVFDNIAFGLTVLP 103 (353)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEe--cCcccCCCCcHHHHHHhhhhhcc
Confidence 467899999999999999999999875432221 11 111211 110
Q ss_pred -----c---HHHHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCcccccccccc-ccccc-c
Q 045686 217 -----N---LEKIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVS-DLLDD-S 282 (885)
Q Consensus 217 -----~---~~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~-~~l~~-~ 282 (885)
+ ..+...++++.+++.... ..-+..+...-.+.+.+..++-+++||+..+..|....... ..+.. .
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~ 183 (353)
T PRK10851 104 RRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLH 183 (353)
T ss_pred cccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 0 112334556666664311 01223444555678888889999999999887665332111 11111 2
Q ss_pred CCCCCEEEEEcCChhHHhhhc
Q 045686 283 SQTGSKIVFTTRSEEVCGEMG 303 (885)
Q Consensus 283 ~~~gs~IivTTR~~~v~~~~~ 303 (885)
...|..||++|++.+.+..+.
T Consensus 184 ~~~g~tii~vTHd~~ea~~~~ 204 (353)
T PRK10851 184 EELKFTSVFVTHDQEEAMEVA 204 (353)
T ss_pred HhcCCEEEEEeCCHHHHHHhC
Confidence 234789999999987766543
No 424
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.87 E-value=0.002 Score=64.56 Aligned_cols=36 Identities=33% Similarity=0.480 Sum_probs=29.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEE
Q 045686 174 KVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKV 212 (885)
Q Consensus 174 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v 212 (885)
-.++|+|..|+||||++..+.... ...|..+++++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~---~~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYL---RHKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhh---cccCCEEEEEec
Confidence 367899999999999999998876 367877776654
No 425
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.87 E-value=0.0055 Score=64.24 Aligned_cols=68 Identities=16% Similarity=0.093 Sum_probs=42.7
Q ss_pred hhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCCCCCEEEEEcCChhHHhhhcccceeec
Q 045686 241 EDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQTGSKIVFTTRSEEVCGEMGARRRFRV 310 (885)
Q Consensus 241 ~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~gs~IivTTR~~~v~~~~~~~~~~~l 310 (885)
.+...-.+.+.+..++-+++||+.....|........ .+.... .+..||++|++.+...... .+.+.+
T Consensus 165 Gq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tiii~sH~~~~~~~~~-d~i~~l 233 (274)
T PRK14265 165 GQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELK-EQYTIIMVTHNMQQASRVA-DWTAFF 233 (274)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhC-CEEEEE
Confidence 3444455777888899999999998887755432211 111122 3578999999987665442 344444
No 426
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=96.87 E-value=0.0044 Score=64.94 Aligned_cols=128 Identities=12% Similarity=0.097 Sum_probs=71.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--ccE-EEEEEEcCcc-----cHHH-----------HHHHHHHHcCC
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FDL-VIWVKVSRDA-----NLEK-----------IQESILRRFEI 231 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~~-~~wv~v~~~~-----~~~~-----------~~~~i~~~l~~ 231 (885)
..+.+++|+|..|+|||||++.++....+..+. ++. +.++. +.. ++.+ -...++..+++
T Consensus 61 ~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~i~yv~--q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l 138 (282)
T cd03291 61 EKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSS--QFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQL 138 (282)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEEEEe--CcccccccCHHHHhhcccccCHHHHHHHHHHhCC
Confidence 577899999999999999999999876433222 111 22222 211 0000 01122222222
Q ss_pred Cc---------c------ccCCCChhHHHHHHHHHhcCCCeEEEEecCCCcccccccccccc-ccccCCCCCEEEEEcCC
Q 045686 232 PD---------Q------MWIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSDL-LDDSSQTGSKIVFTTRS 295 (885)
Q Consensus 232 ~~---------~------~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~~-l~~~~~~gs~IivTTR~ 295 (885)
.. . ...-+..+...-.+.+.+..++-++++|+.....|......... +......+..||++|++
T Consensus 139 ~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~ 218 (282)
T cd03291 139 EEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSK 218 (282)
T ss_pred HHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCC
Confidence 10 0 00112233444457778888999999999988777554321110 00011236789999998
Q ss_pred hhHHh
Q 045686 296 EEVCG 300 (885)
Q Consensus 296 ~~v~~ 300 (885)
.+...
T Consensus 219 ~~~~~ 223 (282)
T cd03291 219 MEHLK 223 (282)
T ss_pred hHHHH
Confidence 77654
No 427
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.86 E-value=0.00056 Score=67.62 Aligned_cols=32 Identities=22% Similarity=0.249 Sum_probs=15.4
Q ss_pred ceEEEecccCcccccccccCCCCchhHHHHHhhc
Q 045686 514 EAVRLSLWGSSIDFLALVEAPSCPQVRTLLARLT 547 (885)
Q Consensus 514 ~~~~l~l~~~~i~~~~~~~~~~~~~Lr~L~l~~~ 547 (885)
.+.++++.+..++. +..++.+++|+.|.++.|
T Consensus 44 ~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn 75 (260)
T KOG2739|consen 44 ELELLSVINVGLTT--LTNFPKLPKLKKLELSDN 75 (260)
T ss_pred chhhhhhhccceee--cccCCCcchhhhhcccCC
Confidence 34444444444444 444455555555555555
No 428
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=96.86 E-value=0.0045 Score=65.20 Aligned_cols=136 Identities=17% Similarity=0.167 Sum_probs=76.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--cc---------------EEEEEEEcCcc-------cH--------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FD---------------LVIWVKVSRDA-------NL-------- 218 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~---------------~~~wv~v~~~~-------~~-------- 218 (885)
..+.+++|+|..|+|||||.+.++.......+. ++ .+.++ .+.+ .+
T Consensus 34 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v--~q~~~~~~~~~~v~~~l~~~~ 111 (280)
T PRK13633 34 KKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMV--FQNPDNQIVATIVEEDVAFGP 111 (280)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHhhheEEE--ecChhhhhccccHHHHHHhhH
Confidence 567899999999999999999998775432111 00 01111 1111 00
Q ss_pred ----------HHHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-ccccc-
Q 045686 219 ----------EKIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDS- 282 (885)
Q Consensus 219 ----------~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~- 282 (885)
.+...++++.+++.... ..-+..+...-.+.+.+..++-++++|+.....|........ .+...
T Consensus 112 ~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~ 191 (280)
T PRK13633 112 ENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELN 191 (280)
T ss_pred hhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 11223444455543210 011223444445777888899999999998877654432111 11112
Q ss_pred CCCCCEEEEEcCChhHHhhhcccceeec
Q 045686 283 SQTGSKIVFTTRSEEVCGEMGARRRFRV 310 (885)
Q Consensus 283 ~~~gs~IivTTR~~~v~~~~~~~~~~~l 310 (885)
...|..||++|++.+.+.. ..+.+.+
T Consensus 192 ~~~g~tillvtH~~~~~~~--~d~v~~l 217 (280)
T PRK13633 192 KKYGITIILITHYMEEAVE--ADRIIVM 217 (280)
T ss_pred HhcCCEEEEEecChHHHhc--CCEEEEE
Confidence 2247899999999877653 3444433
No 429
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=96.86 E-value=0.006 Score=63.35 Aligned_cols=66 Identities=9% Similarity=0.124 Sum_probs=41.2
Q ss_pred hHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCCCCCEEEEEcCChhHHhhhcccceeec
Q 045686 242 DGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQTGSKIVFTTRSEEVCGEMGARRRFRV 310 (885)
Q Consensus 242 ~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~gs~IivTTR~~~v~~~~~~~~~~~l 310 (885)
+...-.+.+.+..++-++++|+.....|........ .+. ....+..||++|++.+.... ..+.+.+
T Consensus 161 ~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~-~~~~~~tiii~sh~~~~~~~--~dri~~l 227 (257)
T cd03288 161 QRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVM-TAFADRTVVTIAHRVSTILD--ADLVLVL 227 (257)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHH-HhcCCCEEEEEecChHHHHh--CCEEEEE
Confidence 444445777888889999999998876654332111 111 11247889999998876653 3444433
No 430
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.86 E-value=0.0063 Score=63.04 Aligned_cols=60 Identities=17% Similarity=0.143 Sum_probs=38.0
Q ss_pred hHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCCCCCEEEEEcCChhHHhhh
Q 045686 242 DGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQTGSKIVFTTRSEEVCGEM 302 (885)
Q Consensus 242 ~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~gs~IivTTR~~~v~~~~ 302 (885)
+...-.+.+.+..++-+++||+.....|........ .+... ..|..||++|++.+.....
T Consensus 152 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~~tilivsh~~~~~~~~ 212 (251)
T PRK14249 152 QQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQEL-KQNYTIAIVTHNMQQAARA 212 (251)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHhh
Confidence 334445677778889999999998876654332111 11112 2467899999987665543
No 431
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=96.86 E-value=0.0055 Score=72.27 Aligned_cols=132 Identities=17% Similarity=0.164 Sum_probs=77.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--cc----------------------------EEEEEEEcC------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FD----------------------------LVIWVKVSR------ 214 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~----------------------------~~~wv~v~~------ 214 (885)
..+.+++|+|++|+|||||++.++.......+. +. .+.+|.-..
T Consensus 40 ~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~ 119 (623)
T PRK10261 40 QRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNP 119 (623)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCEEEEEeCchhhcCC
Confidence 567999999999999999999998775321111 11 122221110
Q ss_pred cccHH-------------------HHHHHHHHHcCCCcc-----c--cCCCChhHHHHHHHHHhcCCCeEEEEecCCCcc
Q 045686 215 DANLE-------------------KIQESILRRFEIPDQ-----M--WIGKDEDGRANEILSNLRGKKFVLLLDDVWERL 268 (885)
Q Consensus 215 ~~~~~-------------------~~~~~i~~~l~~~~~-----~--~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~ 268 (885)
..++. .-..++++.+++... . ..-+..+...-.|...+..++-+||+|+..+..
T Consensus 120 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~L 199 (623)
T PRK10261 120 VFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTAL 199 (623)
T ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcc
Confidence 01111 112345666676420 0 112233444556778888889999999999887
Q ss_pred ccccccccc-ccccc-CCCCCEEEEEcCChhHHhhh
Q 045686 269 DLSKVGVSD-LLDDS-SQTGSKIVFTTRSEEVCGEM 302 (885)
Q Consensus 269 ~~~~~~~~~-~l~~~-~~~gs~IivTTR~~~v~~~~ 302 (885)
|........ .+... ...|..||++|++.+.+..+
T Consensus 200 D~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~ 235 (623)
T PRK10261 200 DVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEI 235 (623)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHh
Confidence 765421111 11112 23378899999998776554
No 432
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.85 E-value=0.0065 Score=63.03 Aligned_cols=59 Identities=17% Similarity=0.205 Sum_probs=36.7
Q ss_pred hHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCCCCCEEEEEcCChhHHhh
Q 045686 242 DGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQTGSKIVFTTRSEEVCGE 301 (885)
Q Consensus 242 ~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~gs~IivTTR~~~v~~~ 301 (885)
+...-.+.+.+...+-+++||++....|........ .+.... .+..||++|++.+....
T Consensus 154 ~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~-~~~tvii~sh~~~~~~~ 213 (253)
T PRK14261 154 QQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLK-KEYTVIIVTHNMQQAAR 213 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-hCceEEEEEcCHHHHHh
Confidence 334445667777888999999998877655332111 111122 24689999998765543
No 433
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.85 E-value=0.0079 Score=62.27 Aligned_cols=60 Identities=18% Similarity=0.183 Sum_probs=37.9
Q ss_pred hhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCCCCCEEEEEcCChhHHhh
Q 045686 241 EDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQTGSKIVFTTRSEEVCGE 301 (885)
Q Consensus 241 ~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~gs~IivTTR~~~v~~~ 301 (885)
.+...-.+.+.+..++-+++||+.....|........ .+... ..|..||++|++.+....
T Consensus 150 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~~tiiivtH~~~~~~~ 210 (250)
T PRK14245 150 GQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHEL-KKDYTIVIVTHNMQQAAR 210 (250)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCeEEEEeCCHHHHHh
Confidence 3344445777788888999999998877654332111 11112 236789999998765543
No 434
>PLN03073 ABC transporter F family; Provisional
Probab=96.85 E-value=0.0056 Score=72.68 Aligned_cols=129 Identities=19% Similarity=0.236 Sum_probs=75.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCcc-----EEEEEEEcC--cccH----------------HHHHHHHHH
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFD-----LVIWVKVSR--DANL----------------EKIQESILR 227 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~-----~~~wv~v~~--~~~~----------------~~~~~~i~~ 227 (885)
..+.+++|+|+.|+|||||++.++....+..+... .+.|+.-.. ..+. ..-...++.
T Consensus 533 ~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igyv~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~ 612 (718)
T PLN03073 533 DLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLG 612 (718)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEEEeccccccCCcchhHHHHHHHhcCCCCHHHHHHHHH
Confidence 56789999999999999999999987643222211 122222100 0000 112345566
Q ss_pred HcCCCcc--c---cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCCCCCEEEEEcCChhHHhh
Q 045686 228 RFEIPDQ--M---WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQTGSKIVFTTRSEEVCGE 301 (885)
Q Consensus 228 ~l~~~~~--~---~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~gs~IivTTR~~~v~~~ 301 (885)
.+++... . ..-+..+...-.+.+.+..++-+|+||+..+..|........ .+ ....| .||++|++...+..
T Consensus 613 ~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L--~~~~g-tvIivSHd~~~i~~ 689 (718)
T PLN03073 613 SFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGL--VLFQG-GVLMVSHDEHLISG 689 (718)
T ss_pred HCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHH--HHcCC-EEEEEECCHHHHHH
Confidence 6666421 1 011223444445777888899999999999887765432211 11 11124 79999999877654
Q ss_pred h
Q 045686 302 M 302 (885)
Q Consensus 302 ~ 302 (885)
.
T Consensus 690 ~ 690 (718)
T PLN03073 690 S 690 (718)
T ss_pred h
Confidence 4
No 435
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=96.85 E-value=0.0043 Score=67.21 Aligned_cols=130 Identities=16% Similarity=0.184 Sum_probs=76.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--c------------------cEEEEEEEcCcc------cH------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--F------------------DLVIWVKVSRDA------NL------ 218 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f------------------~~~~wv~v~~~~------~~------ 218 (885)
..+.+++|+|++|+|||||.+.++....+..+. + ..+.++. +.+ ++
T Consensus 17 ~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~--Q~~~l~~~~TV~eNi~~ 94 (363)
T TIGR01186 17 AKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVF--QQFALFPHMTILQNTSL 94 (363)
T ss_pred cCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEE--CCCcCCCCCCHHHHHHH
Confidence 567899999999999999999999776432110 0 0122221 110 11
Q ss_pred ------------HHHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccc
Q 045686 219 ------------EKIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDD 281 (885)
Q Consensus 219 ------------~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~ 281 (885)
.+...++++.+++.... ..-+..+...-.+.+.|...+-++++|+.....|........ .+..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~ 174 (363)
T TIGR01186 95 GPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKK 174 (363)
T ss_pred HHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 12234556666664311 011223444445788888899999999998876654321111 0111
Q ss_pred -cCCCCCEEEEEcCChhHHhhh
Q 045686 282 -SSQTGSKIVFTTRSEEVCGEM 302 (885)
Q Consensus 282 -~~~~gs~IivTTR~~~v~~~~ 302 (885)
....|..||++|++.+.+..+
T Consensus 175 l~~~~~~Tii~vTHd~~ea~~~ 196 (363)
T TIGR01186 175 LQATLQKTIVFITHDLDEAIRI 196 (363)
T ss_pred HHHhcCCEEEEEeCCHHHHHHh
Confidence 123477899999998765544
No 436
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.84 E-value=0.02 Score=60.54 Aligned_cols=177 Identities=14% Similarity=0.121 Sum_probs=93.7
Q ss_pred hHHHHHHHHHhhcCCCe-EEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHHHcCCCc---
Q 045686 158 DSIISEVWRCIEDHNEK-VIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILRRFEIPD--- 233 (885)
Q Consensus 158 ~~~~~~l~~~L~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~--- 233 (885)
+...+.+...+..++.. .+.++|+.|+||+++|..++...-.. ....+- ... ....+.+-..+.
T Consensus 10 ~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~-~~~~~~-------~c~----~c~~~~~g~HPD~~~ 77 (319)
T PRK08769 10 QRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLAS-GPDPAA-------AQR----TRQLIAAGTHPDLQL 77 (319)
T ss_pred HHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCC-CCCCCC-------cch----HHHHHhcCCCCCEEE
Confidence 34556677777665544 68899999999999999888765321 100000 000 000111100000
Q ss_pred ----cccCC-----CChhHHHHHHHHHh-----cCCCeEEEEecCCCcccc--ccccccccccccCCCCCEEEEEcCCh-
Q 045686 234 ----QMWIG-----KDEDGRANEILSNL-----RGKKFVLLLDDVWERLDL--SKVGVSDLLDDSSQTGSKIVFTTRSE- 296 (885)
Q Consensus 234 ----~~~~~-----~~~~~~~~~l~~~l-----~~k~~LlVLDdv~~~~~~--~~~~~~~~l~~~~~~gs~IivTTR~~- 296 (885)
+...+ .-.-+.+..+.+.+ .+++-++|+|+++....- ..+...+- ....++.+|++|.+.
T Consensus 78 i~~~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLE---EPp~~~~fiL~~~~~~ 154 (319)
T PRK08769 78 VSFIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLE---EPSPGRYLWLISAQPA 154 (319)
T ss_pred EecCCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhh---CCCCCCeEEEEECChh
Confidence 00000 00112222333322 245679999999765321 11211111 233466677766654
Q ss_pred hHHhhh-cccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCchhHHHHH
Q 045686 297 EVCGEM-GARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPLALVTI 358 (885)
Q Consensus 297 ~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~ 358 (885)
.+...+ +-...+.+.+++.+++.+.+... +. . +..+..++..++|.|+.+..+
T Consensus 155 ~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~-~~----~----~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 155 RLPATIRSRCQRLEFKLPPAHEALAWLLAQ-GV----S----ERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred hCchHHHhhheEeeCCCcCHHHHHHHHHHc-CC----C----hHHHHHHHHHcCCCHHHHHHH
Confidence 333222 22357889999999998888653 21 1 122678899999999876543
No 437
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=96.84 E-value=0.0044 Score=71.14 Aligned_cols=132 Identities=11% Similarity=0.113 Sum_probs=76.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--ccE---------------EEEEEEc-------Cccc---------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FDL---------------VIWVKVS-------RDAN--------- 217 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~~---------------~~wv~v~-------~~~~--------- 217 (885)
..+.+++|+|+.|+|||||++.++....+..+. ++. +.++.-. ...+
T Consensus 272 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~ 351 (491)
T PRK10982 272 HKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISN 351 (491)
T ss_pred eCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhh
Confidence 567899999999999999999998765321111 100 1111000 0000
Q ss_pred ---------------HHHHHHHHHHHcCCCcc--c---cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc
Q 045686 218 ---------------LEKIQESILRRFEIPDQ--M---WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD 277 (885)
Q Consensus 218 ---------------~~~~~~~i~~~l~~~~~--~---~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~ 277 (885)
......++++.+++... . ..-+..+...-.+.+.+..++-+++||+..+..|........
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~ 431 (491)
T PRK10982 352 IRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIY 431 (491)
T ss_pred hhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHH
Confidence 01122344555555311 0 112334555556778888899999999998887765432211
Q ss_pred -cccccCCCCCEEEEEcCChhHHhhh
Q 045686 278 -LLDDSSQTGSKIVFTTRSEEVCGEM 302 (885)
Q Consensus 278 -~l~~~~~~gs~IivTTR~~~v~~~~ 302 (885)
.+......|..||++|++.+.+..+
T Consensus 432 ~~l~~l~~~~~tvi~vsHd~~~~~~~ 457 (491)
T PRK10982 432 QLIAELAKKDKGIIIISSEMPELLGI 457 (491)
T ss_pred HHHHHHHHCCCEEEEECCChHHHHhh
Confidence 1111223477899999998766544
No 438
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=96.84 E-value=0.0077 Score=62.90 Aligned_cols=129 Identities=18% Similarity=0.176 Sum_probs=73.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--ccE--------------EEEEEEcCcc------cH----------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FDL--------------VIWVKVSRDA------NL---------- 218 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~~--------------~~wv~v~~~~------~~---------- 218 (885)
.++.+++|+|+.|+|||||++.++....+..+. |+. +.++. +.. ++
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~--q~~~~~~~~tv~~~~~~~~~~ 108 (265)
T PRK10253 31 PDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLA--QNATTPGDITVQELVARGRYP 108 (265)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEee--ccCcCCCCCcHHHHHHhCccc
Confidence 567899999999999999999998876432111 110 11111 110 01
Q ss_pred ------------HHHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccc
Q 045686 219 ------------EKIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDD 281 (885)
Q Consensus 219 ------------~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~ 281 (885)
.....++++.+++.... ..-+..+...-.+.+.+..++-++++|++.+..|........ .+..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~ 188 (265)
T PRK10253 109 HQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSE 188 (265)
T ss_pred ccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence 01123344444543210 011223444445677778888999999998877654331111 1111
Q ss_pred cC-CCCCEEEEEcCChhHHhh
Q 045686 282 SS-QTGSKIVFTTRSEEVCGE 301 (885)
Q Consensus 282 ~~-~~gs~IivTTR~~~v~~~ 301 (885)
.. ..|..||++|++.+....
T Consensus 189 l~~~~~~tiii~tH~~~~~~~ 209 (265)
T PRK10253 189 LNREKGYTLAAVLHDLNQACR 209 (265)
T ss_pred HHHhcCCEEEEEeCCHHHHHH
Confidence 12 237789999999875443
No 439
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=96.84 E-value=0.0058 Score=70.36 Aligned_cols=132 Identities=17% Similarity=0.236 Sum_probs=76.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--cc---------------EEEEEE-------------EcCcc----
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FD---------------LVIWVK-------------VSRDA---- 216 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~---------------~~~wv~-------------v~~~~---- 216 (885)
..+.+++|+|+.|+|||||.+.++.......+. ++ .+.++. +.+..
T Consensus 277 ~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~ 356 (501)
T PRK11288 277 RAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISA 356 (501)
T ss_pred eCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhcccc
Confidence 567899999999999999999998764321110 00 001110 00000
Q ss_pred --------------cHHHHHHHHHHHcCCC-cc-c---cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc
Q 045686 217 --------------NLEKIQESILRRFEIP-DQ-M---WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD 277 (885)
Q Consensus 217 --------------~~~~~~~~i~~~l~~~-~~-~---~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~ 277 (885)
...+...+++..+++. .. . ..-+..+...-.+.+.+..++-+|+||+..+..|........
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~ 436 (501)
T PRK11288 357 RRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIY 436 (501)
T ss_pred chhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHH
Confidence 0012234566667763 11 1 112234455556778888899999999999887765442221
Q ss_pred -cccccCCCCCEEEEEcCChhHHhhh
Q 045686 278 -LLDDSSQTGSKIVFTTRSEEVCGEM 302 (885)
Q Consensus 278 -~l~~~~~~gs~IivTTR~~~v~~~~ 302 (885)
.+......|..||++|++.+.....
T Consensus 437 ~~l~~l~~~g~tviivsHd~~~~~~~ 462 (501)
T PRK11288 437 NVIYELAAQGVAVLFVSSDLPEVLGV 462 (501)
T ss_pred HHHHHHHhCCCEEEEECCCHHHHHhh
Confidence 1111233477899999998766544
No 440
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.024 Score=66.01 Aligned_cols=104 Identities=25% Similarity=0.383 Sum_probs=65.7
Q ss_pred CccchhHHHHHHHHHhhc---------CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHH
Q 045686 153 KTVGLDSIISEVWRCIED---------HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQE 223 (885)
Q Consensus 153 ~~vgr~~~~~~l~~~L~~---------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~ 223 (885)
.++|.+..++.+.+.+.. .+..+....||.|||||-||+.++...- +.=+..+-+..|+.. --+
T Consensus 492 rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lf---g~e~aliR~DMSEy~----EkH 564 (786)
T COG0542 492 RVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALF---GDEQALIRIDMSEYM----EKH 564 (786)
T ss_pred ceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhc---CCCccceeechHHHH----HHH
Confidence 478999999999988832 2345777799999999999999988763 211334444333321 122
Q ss_pred HHHHHcCCCccccCCCChhHHHHHHHHHhcCCCe-EEEEecCCCc
Q 045686 224 SILRRFEIPDQMWIGKDEDGRANEILSNLRGKKF-VLLLDDVWER 267 (885)
Q Consensus 224 ~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~-LlVLDdv~~~ 267 (885)
.+.+-+|.+.. +.+ .++ -..|-+.++.++| +++||++...
T Consensus 565 sVSrLIGaPPG-YVG--yee-GG~LTEaVRr~PySViLlDEIEKA 605 (786)
T COG0542 565 SVSRLIGAPPG-YVG--YEE-GGQLTEAVRRKPYSVILLDEIEKA 605 (786)
T ss_pred HHHHHhCCCCC-Cce--ecc-ccchhHhhhcCCCeEEEechhhhc
Confidence 34444454431 111 111 3456677788888 8889999653
No 441
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.83 E-value=0.0054 Score=71.82 Aligned_cols=135 Identities=19% Similarity=0.189 Sum_probs=73.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--cc--------------EEEEEEEcCccc-----------------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FD--------------LVIWVKVSRDAN----------------- 217 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~--------------~~~wv~v~~~~~----------------- 217 (885)
+++..++|+|+.|+|||||++.+.....+..+. ++ .+.|+ .|+..
T Consensus 364 ~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v--~Q~~~lf~~ti~~Ni~~~~~~~ 441 (574)
T PRK11160 364 KAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVV--SQRVHLFSATLRDNLLLAAPNA 441 (574)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEE--cccchhhcccHHHHhhcCCCcc
Confidence 678999999999999999999998876543221 11 12232 22210
Q ss_pred HHHHHHHHHHHcCCCcc----c---------cC-CCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-ccccc
Q 045686 218 LEKIQESILRRFEIPDQ----M---------WI-GKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDS 282 (885)
Q Consensus 218 ~~~~~~~i~~~l~~~~~----~---------~~-~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~ 282 (885)
.++-..+.++..+.... + .. -+..+...-.+.+.+-.++-++|||+..+..|........ .+. .
T Consensus 442 ~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~-~ 520 (574)
T PRK11160 442 SDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLA-E 520 (574)
T ss_pred CHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH-H
Confidence 11222334444443210 0 00 1112333334677777888999999998876654331111 111 2
Q ss_pred CCCCCEEEEEcCChhHHhhhcccceeec
Q 045686 283 SQTGSKIVFTTRSEEVCGEMGARRRFRV 310 (885)
Q Consensus 283 ~~~gs~IivTTR~~~v~~~~~~~~~~~l 310 (885)
..++..+|++|+..+.... .++++.+
T Consensus 521 ~~~~~tviiitHr~~~~~~--~d~i~~l 546 (574)
T PRK11160 521 HAQNKTVLMITHRLTGLEQ--FDRICVM 546 (574)
T ss_pred HcCCCEEEEEecChhHHHh--CCEEEEE
Confidence 2346677777776654443 3444544
No 442
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=96.82 E-value=0.0051 Score=70.67 Aligned_cols=132 Identities=17% Similarity=0.203 Sum_probs=76.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--c---------------cEEEEEEEcC----cccH-----------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--F---------------DLVIWVKVSR----DANL----------- 218 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f---------------~~~~wv~v~~----~~~~----------- 218 (885)
.++.+++|+|+.|+|||||++.++....+..+. + ..+.++.-.. ..++
T Consensus 22 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~ 101 (491)
T PRK10982 22 RPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSVMDNMWLGRYPT 101 (491)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCCHHHHhhcccccc
Confidence 467899999999999999999998865432111 1 0122321100 0000
Q ss_pred ----------HHHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccC
Q 045686 219 ----------EKIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSS 283 (885)
Q Consensus 219 ----------~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~ 283 (885)
.+...++++.+++.... ..-+..+...-.+.+.+..++-+++||+..+..|........ .+....
T Consensus 102 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~ 181 (491)
T PRK10982 102 KGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLK 181 (491)
T ss_pred cccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Confidence 11234455666654211 011223444455777888889999999999887754332111 111122
Q ss_pred CCCCEEEEEcCChhHHhhh
Q 045686 284 QTGSKIVFTTRSEEVCGEM 302 (885)
Q Consensus 284 ~~gs~IivTTR~~~v~~~~ 302 (885)
..|..||++|++.+.+...
T Consensus 182 ~~g~tvii~tH~~~~~~~~ 200 (491)
T PRK10982 182 ERGCGIVYISHKMEEIFQL 200 (491)
T ss_pred hCCCEEEEEecCHHHHHHh
Confidence 3477899999997765543
No 443
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=96.82 E-value=0.0067 Score=63.39 Aligned_cols=58 Identities=16% Similarity=0.111 Sum_probs=36.6
Q ss_pred hHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCCCCCEEEEEcCChhHHh
Q 045686 242 DGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQTGSKIVFTTRSEEVCG 300 (885)
Q Consensus 242 ~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~gs~IivTTR~~~v~~ 300 (885)
+...-.+.+.+..++-+++||+.....|........ .+... ..+..||++|++.+...
T Consensus 168 ~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~~tiii~tH~~~~~~ 226 (267)
T PRK14237 168 QQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFEL-KKNYTIIIVTHNMQQAA 226 (267)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-hcCCEEEEEecCHHHHH
Confidence 334445677778888899999998877654331111 11112 23678999998876543
No 444
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=96.82 E-value=0.0078 Score=70.47 Aligned_cols=29 Identities=31% Similarity=0.580 Sum_probs=25.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhcc
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRD 199 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~ 199 (885)
.++..++|+|+.|+|||||++.+.....+
T Consensus 339 ~~G~~~~ivG~sGsGKSTLl~ll~g~~~p 367 (569)
T PRK10789 339 KPGQMLGICGPTGSGKSTLLSLIQRHFDV 367 (569)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcccCC
Confidence 67899999999999999999999877654
No 445
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.82 E-value=0.008 Score=62.51 Aligned_cols=59 Identities=19% Similarity=0.176 Sum_probs=37.9
Q ss_pred hHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCCCCCEEEEEcCChhHHhh
Q 045686 242 DGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQTGSKIVFTTRSEEVCGE 301 (885)
Q Consensus 242 ~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~gs~IivTTR~~~v~~~ 301 (885)
+...-.+.+.+..++-+++||+..+..|........ .+... ..|..||++|++.+.+..
T Consensus 159 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l-~~~~tiiivsH~~~~~~~ 218 (258)
T PRK14268 159 QQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNL-KKDYTIVIVTHNMQQAAR 218 (258)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHH-hhCCEEEEEECCHHHHHH
Confidence 344445777788888999999998876654332111 11112 236789999999876543
No 446
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=96.82 E-value=0.0073 Score=62.84 Aligned_cols=59 Identities=19% Similarity=0.189 Sum_probs=36.9
Q ss_pred hHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCCCCCEEEEEcCChhHHhh
Q 045686 242 DGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQTGSKIVFTTRSEEVCGE 301 (885)
Q Consensus 242 ~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~gs~IivTTR~~~v~~~ 301 (885)
+...-.+.+.+..++-++++|+.....|........ .+... ..+..||++|++.+....
T Consensus 153 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~~~tviivsH~~~~~~~ 212 (258)
T PRK14241 153 QQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINEL-KQDYTIVIVTHNMQQAAR 212 (258)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH-hcCCEEEEEecCHHHHHH
Confidence 344445677777888999999998877654331111 11112 234689999998765543
No 447
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.81 E-value=0.0057 Score=64.30 Aligned_cols=130 Identities=14% Similarity=0.132 Sum_probs=72.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--cc--------------EEEEEEEcCc--c---cHH----------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FD--------------LVIWVKVSRD--A---NLE---------- 219 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~--------------~~~wv~v~~~--~---~~~---------- 219 (885)
.++.+++|+|..|.|||||++.++.......+. |+ .+.++.-... + ++.
T Consensus 31 ~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~ 110 (277)
T PRK13642 31 TKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQ 110 (277)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHc
Confidence 567899999999999999999998765432221 10 1122211100 0 110
Q ss_pred --------HHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-ccccc-CCC
Q 045686 220 --------KIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDS-SQT 285 (885)
Q Consensus 220 --------~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~-~~~ 285 (885)
+....+++.+++.... ..-+..+...-.+.+.+..++-++++|+.....|........ .+... ...
T Consensus 111 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~ 190 (277)
T PRK13642 111 GIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKY 190 (277)
T ss_pred CCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc
Confidence 1112333444432110 011223344445777788888899999998877654332211 11112 223
Q ss_pred CCEEEEEcCChhHHh
Q 045686 286 GSKIVFTTRSEEVCG 300 (885)
Q Consensus 286 gs~IivTTR~~~v~~ 300 (885)
|..||++|++.+.+.
T Consensus 191 g~tiil~sH~~~~~~ 205 (277)
T PRK13642 191 QLTVLSITHDLDEAA 205 (277)
T ss_pred CCEEEEEeCCHHHHH
Confidence 788999999987765
No 448
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=96.81 E-value=0.0055 Score=72.52 Aligned_cols=130 Identities=16% Similarity=0.188 Sum_probs=73.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--cc---EEEEEEEcCc-c----cHHH----------------HHHH
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FD---LVIWVKVSRD-A----NLEK----------------IQES 224 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~---~~~wv~v~~~-~----~~~~----------------~~~~ 224 (885)
..+.+++|+|+.|+|||||.+.++....+..+. +. .+.|+.-... . ++.+ -...
T Consensus 343 ~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~ 422 (635)
T PRK11147 343 QRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLG 422 (635)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEEEEeCcccccCCCCCHHHHHHhhcccccccchHHHHHH
Confidence 567899999999999999999999876432222 11 1223321100 0 1111 1223
Q ss_pred HHHHcCCCccc-----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccccccccCCCCCEEEEEcCChhHH
Q 045686 225 ILRRFEIPDQM-----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSDLLDDSSQTGSKIVFTTRSEEVC 299 (885)
Q Consensus 225 i~~~l~~~~~~-----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~~l~~~~~~gs~IivTTR~~~v~ 299 (885)
++..++..... ..-+..+...-.+.+.+..++-+|+||+..+..|.........+ ....+..||++|++...+
T Consensus 423 ~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~--l~~~~~tvi~vSHd~~~~ 500 (635)
T PRK11147 423 YLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEEL--LDSYQGTVLLVSHDRQFV 500 (635)
T ss_pred HHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHH--HHhCCCeEEEEECCHHHH
Confidence 34444442110 01122333444567777788999999999988776544221111 111134799999998766
Q ss_pred hhh
Q 045686 300 GEM 302 (885)
Q Consensus 300 ~~~ 302 (885)
..+
T Consensus 501 ~~~ 503 (635)
T PRK11147 501 DNT 503 (635)
T ss_pred HHh
Confidence 544
No 449
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.80 E-value=0.0062 Score=55.88 Aligned_cols=125 Identities=22% Similarity=0.286 Sum_probs=72.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--ccEEEEEE-----------------------E-----------cC
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FDLVIWVK-----------------------V-----------SR 214 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~~~~wv~-----------------------v-----------~~ 214 (885)
..+..++|+|++|+|||||.+.++.-.....++ |.+.-.-+ | .+
T Consensus 27 ~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVeDNlifP~~~r~r 106 (223)
T COG4619 27 RAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQIRNR 106 (223)
T ss_pred cCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchhhccccchHHhcc
Confidence 467889999999999999999999876443221 22110000 0 01
Q ss_pred cccHHHHHHHHHHHcCCCccc-----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCcccccc------ccccccccccC
Q 045686 215 DANLEKIQESILRRFEIPDQM-----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSK------VGVSDLLDDSS 283 (885)
Q Consensus 215 ~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~------~~~~~~l~~~~ 283 (885)
.++ .....+++..++.+... ..-+..+.....+.+.|+-.+-+|.||+..+..|... +...+ ..
T Consensus 107 r~d-r~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~----v~ 181 (223)
T COG4619 107 RPD-RAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRY----VR 181 (223)
T ss_pred CCC-hHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHH----hh
Confidence 111 23344555555554321 1122344445556777888888999999877655322 11111 22
Q ss_pred CCCCEEEEEcCChhHHh
Q 045686 284 QTGSKIVFTTRSEEVCG 300 (885)
Q Consensus 284 ~~gs~IivTTR~~~v~~ 300 (885)
.....|+..|++++-+-
T Consensus 182 ~q~vAv~WiTHd~dqa~ 198 (223)
T COG4619 182 EQNVAVLWITHDKDQAI 198 (223)
T ss_pred hhceEEEEEecChHHHh
Confidence 44677899999886543
No 450
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.80 E-value=0.0064 Score=63.00 Aligned_cols=59 Identities=19% Similarity=0.157 Sum_probs=37.4
Q ss_pred hHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCCCCCEEEEEcCChhHHhh
Q 045686 242 DGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQTGSKIVFTTRSEEVCGE 301 (885)
Q Consensus 242 ~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~gs~IivTTR~~~v~~~ 301 (885)
+...-.+.+.+..++-++++|+..+..|........ .+... ..+..||++|++.+....
T Consensus 152 q~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~-~~~~tiiiisH~~~~~~~ 211 (251)
T PRK14251 152 QQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMEL-KHQYTFIMVTHNLQQAGR 211 (251)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHH-HcCCeEEEEECCHHHHHh
Confidence 334445677777888999999998887765432211 11112 235789999998875443
No 451
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=96.80 E-value=0.0056 Score=70.69 Aligned_cols=132 Identities=13% Similarity=0.160 Sum_probs=77.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--cc---------------EEEEEEEc-------CcccH--------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FD---------------LVIWVKVS-------RDANL-------- 218 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~---------------~~~wv~v~-------~~~~~-------- 218 (885)
..+.+++|+|+.|+|||||++.++....+..+. |+ .+.|+.-. ...++
T Consensus 287 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~ 366 (510)
T PRK09700 287 CRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISR 366 (510)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhcccc
Confidence 567899999999999999999998754321110 00 11222100 00000
Q ss_pred -------------------HHHHHHHHHHcCCC-cc-c---cCCCChhHHHHHHHHHhcCCCeEEEEecCCCcccccccc
Q 045686 219 -------------------EKIQESILRRFEIP-DQ-M---WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVG 274 (885)
Q Consensus 219 -------------------~~~~~~i~~~l~~~-~~-~---~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~ 274 (885)
.....++++.+++. .. . ..-+..+...-.+.+.+..++-++|||+..+..|.....
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~ 446 (510)
T PRK09700 367 SLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKA 446 (510)
T ss_pred ccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHH
Confidence 11234566777764 21 1 112334455556778888889999999999887765432
Q ss_pred ccc-cccccCCCCCEEEEEcCChhHHhhh
Q 045686 275 VSD-LLDDSSQTGSKIVFTTRSEEVCGEM 302 (885)
Q Consensus 275 ~~~-~l~~~~~~gs~IivTTR~~~v~~~~ 302 (885)
... .+......|..||++|++.+.+...
T Consensus 447 ~l~~~l~~l~~~g~tvi~vsHd~~~~~~~ 475 (510)
T PRK09700 447 EIYKVMRQLADDGKVILMVSSELPEIITV 475 (510)
T ss_pred HHHHHHHHHHHCCCEEEEEcCCHHHHHhh
Confidence 211 1111223478899999997765543
No 452
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=96.79 E-value=0.0069 Score=70.15 Aligned_cols=130 Identities=12% Similarity=0.139 Sum_probs=76.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--cc---------------------EEEEEEEcCcc------cHH--
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FD---------------------LVIWVKVSRDA------NLE-- 219 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~---------------------~~~wv~v~~~~------~~~-- 219 (885)
..+.+++|+|+.|+|||||++.++.-..+..+. |+ .+.|+ .+.. ++.
T Consensus 308 ~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v--~q~~~l~~~~tv~e~ 385 (520)
T TIGR03269 308 KEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGIL--HQEYDLYPHRTVLDN 385 (520)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEE--ccCcccCCCCcHHHH
Confidence 567899999999999999999998765321111 10 12222 1211 111
Q ss_pred ---------------HHHHHHHHHcCCCcc-------c--cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccc
Q 045686 220 ---------------KIQESILRRFEIPDQ-------M--WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGV 275 (885)
Q Consensus 220 ---------------~~~~~i~~~l~~~~~-------~--~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~ 275 (885)
....++++.+++... . ..-+..+...-.+.+.+..++-+|++|+..+..|......
T Consensus 386 l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~ 465 (520)
T TIGR03269 386 LTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVD 465 (520)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 112345566666420 0 0112234444557778888999999999998877654322
Q ss_pred cc-ccccc-CCCCCEEEEEcCChhHHhhh
Q 045686 276 SD-LLDDS-SQTGSKIVFTTRSEEVCGEM 302 (885)
Q Consensus 276 ~~-~l~~~-~~~gs~IivTTR~~~v~~~~ 302 (885)
.. .+... ...|..||++|++.+.+...
T Consensus 466 l~~~l~~l~~~~g~tvi~vsHd~~~~~~~ 494 (520)
T TIGR03269 466 VTHSILKAREEMEQTFIIVSHDMDFVLDV 494 (520)
T ss_pred HHHHHHHHHHHcCcEEEEEeCCHHHHHHh
Confidence 11 11111 23478899999998766543
No 453
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=96.78 E-value=0.0055 Score=65.88 Aligned_cols=130 Identities=17% Similarity=0.219 Sum_probs=74.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccC---CC--Ccc------------------EEEEEEEcCcc--------cHH
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDT---GH--DFD------------------LVIWVKVSRDA--------NLE 219 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~---~~--~f~------------------~~~wv~v~~~~--------~~~ 219 (885)
..+.+++|+|.+|+|||||++.+..-.... .+ .|+ .+.+|. +++ .+.
T Consensus 40 ~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~--Q~~~~~l~p~~~v~ 117 (330)
T PRK09473 40 RAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIF--QDPMTSLNPYMRVG 117 (330)
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEE--cCchhhcCCCCCHH
Confidence 567899999999999999999999766431 11 011 122221 211 111
Q ss_pred -------------------HHHHHHHHHcCCCccc-------cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccc
Q 045686 220 -------------------KIQESILRRFEIPDQM-------WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKV 273 (885)
Q Consensus 220 -------------------~~~~~i~~~l~~~~~~-------~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~ 273 (885)
....++++.+++.... ..-+..+...-.+.+.+..++-+||+|+..+..|....
T Consensus 118 ~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~ 197 (330)
T PRK09473 118 EQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQ 197 (330)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHH
Confidence 1122344445543210 01122333444577788889999999999888775433
Q ss_pred cccc-ccccc-CCCCCEEEEEcCChhHHhhh
Q 045686 274 GVSD-LLDDS-SQTGSKIVFTTRSEEVCGEM 302 (885)
Q Consensus 274 ~~~~-~l~~~-~~~gs~IivTTR~~~v~~~~ 302 (885)
.... .+... ...|..||++|++..++..+
T Consensus 198 ~~i~~lL~~l~~~~g~til~iTHdl~~~~~~ 228 (330)
T PRK09473 198 AQIMTLLNELKREFNTAIIMITHDLGVVAGI 228 (330)
T ss_pred HHHHHHHHHHHHHcCCEEEEEECCHHHHHHh
Confidence 2111 11111 23478999999998876654
No 454
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.78 E-value=0.013 Score=57.57 Aligned_cols=127 Identities=15% Similarity=0.140 Sum_probs=75.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEE---------------------------------cCcc-
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKV---------------------------------SRDA- 216 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v---------------------------------~~~~- 216 (885)
.++.+++|+|++|+|||||.+.+....++.++ .+|+.- .++.
T Consensus 32 ~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~G----eI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVa 107 (263)
T COG1127 32 PRGEILAILGGSGSGKSTLLRLILGLLRPDKG----EILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVA 107 (263)
T ss_pred cCCcEEEEECCCCcCHHHHHHHHhccCCCCCC----eEEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhHhhh
Confidence 57899999999999999999999887754322 222211 0000
Q ss_pred ------------cHHHHHHHHHHHcCCCccc-----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCcccccccccc--c
Q 045686 217 ------------NLEKIQESILRRFEIPDQM-----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVS--D 277 (885)
Q Consensus 217 ------------~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~--~ 277 (885)
.++++...-++..|++... .+-+..-.....+.+++.-.+-++++|+.....|.-..... +
T Consensus 108 fplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~L 187 (263)
T COG1127 108 FPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDEL 187 (263)
T ss_pred eehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHH
Confidence 0122222233444554421 01123334555688888889999999999887665332111 0
Q ss_pred cccccCCCCCEEEEEcCChhHHhh
Q 045686 278 LLDDSSQTGSKIVFTTRSEEVCGE 301 (885)
Q Consensus 278 ~l~~~~~~gs~IivTTR~~~v~~~ 301 (885)
...-...-|.++++.|++.+-...
T Consensus 188 I~~L~~~lg~T~i~VTHDl~s~~~ 211 (263)
T COG1127 188 IRELNDALGLTVIMVTHDLDSLLT 211 (263)
T ss_pred HHHHHHhhCCEEEEEECChHHHHh
Confidence 000033458899999998754443
No 455
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.78 E-value=0.0009 Score=66.18 Aligned_cols=108 Identities=27% Similarity=0.242 Sum_probs=79.8
Q ss_pred CCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCC--CCCCcCchhhhcccccceeeccCCcccccCh--hhhcc
Q 045686 534 PSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYN--LDLNQLPEEIGRLKNLHHLNLSNTSIGCLPT--AIKRL 609 (885)
Q Consensus 534 ~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~--~~i~~lp~~i~~L~~L~~L~Ls~~~i~~lp~--~i~~L 609 (885)
..+..|..|.+.++.+++ +.. |..|++|++|++|.| +....++-..-++++|++|++++|+|+.+.. .+..+
T Consensus 40 d~~~~le~ls~~n~gltt--~~~--~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l 115 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTT--LTN--FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKEL 115 (260)
T ss_pred ccccchhhhhhhccceee--ccc--CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhh
Confidence 345677888888887765 443 677899999999999 5555666667778999999999998854221 36678
Q ss_pred ccccEeecCCcccccccCC---cccccCcccceecccccc
Q 045686 610 IKLKVLLLDGIQCHLSIPE---GVISSLSSLQVFSCFSTE 646 (885)
Q Consensus 610 ~~L~~L~l~~~~~l~~lp~---~~i~~L~~L~~L~l~~~~ 646 (885)
.+|..|++.+|.. ..+.. .++.-+++|.+|+-....
T Consensus 116 ~nL~~Ldl~n~~~-~~l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 116 ENLKSLDLFNCSV-TNLDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred cchhhhhcccCCc-cccccHHHHHHHHhhhhccccccccC
Confidence 8999999999963 33332 346678889888876554
No 456
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.78 E-value=0.0078 Score=62.70 Aligned_cols=62 Identities=18% Similarity=0.126 Sum_probs=39.6
Q ss_pred hhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-ccccc-CCCCCEEEEEcCChhHHhhh
Q 045686 241 EDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDS-SQTGSKIVFTTRSEEVCGEM 302 (885)
Q Consensus 241 ~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~-~~~gs~IivTTR~~~v~~~~ 302 (885)
.+...-.+.+.+..++-+++||++....|........ .+... ...|..||++|++......+
T Consensus 154 Gq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~ 217 (261)
T PRK14258 154 GQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRL 217 (261)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHh
Confidence 3344445677777888999999998887765432211 11111 22478899999998765543
No 457
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.78 E-value=0.0078 Score=62.40 Aligned_cols=60 Identities=17% Similarity=0.156 Sum_probs=36.9
Q ss_pred hhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCCCCCEEEEEcCChhHHhh
Q 045686 241 EDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQTGSKIVFTTRSEEVCGE 301 (885)
Q Consensus 241 ~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~gs~IivTTR~~~v~~~ 301 (885)
.+...-.+.+.+..++-++++|+..+..|........ .+.... .+..||++|++.+....
T Consensus 152 G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~~~tiiivsH~~~~~~~ 212 (252)
T PRK14256 152 GQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELK-EKYTIIIVTHNMQQAAR 212 (252)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH-hCCcEEEEECCHHHHHh
Confidence 3344445677777888999999998877654331111 111122 24678889888765443
No 458
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.78 E-value=0.029 Score=59.57 Aligned_cols=176 Identities=10% Similarity=0.066 Sum_probs=92.7
Q ss_pred HHHHHHHHHhhcCCC-eEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHHHcCCCc----
Q 045686 159 SIISEVWRCIEDHNE-KVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILRRFEIPD---- 233 (885)
Q Consensus 159 ~~~~~l~~~L~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~---- 233 (885)
...+.+.+.+..++. ..+.+.|+.|+||+++|..++...--. ..... ...+.-...+.+.. -..+.
T Consensus 9 ~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~-~~~~~-------~~Cg~C~sC~~~~~-g~HPD~~~i 79 (325)
T PRK06871 9 PTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQ-TPQGD-------QPCGQCHSCHLFQA-GNHPDFHIL 79 (325)
T ss_pred HHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCC-CCCCC-------CCCCCCHHHHHHhc-CCCCCEEEE
Confidence 344566677766554 567789999999999999998776321 10000 00000001111110 00000
Q ss_pred -c-ccCCCChhHHHHHHHHHh-----cCCCeEEEEecCCCcccc--ccccccccccccCCCCCEEEEEcCCh-hHHhhh-
Q 045686 234 -Q-MWIGKDEDGRANEILSNL-----RGKKFVLLLDDVWERLDL--SKVGVSDLLDDSSQTGSKIVFTTRSE-EVCGEM- 302 (885)
Q Consensus 234 -~-~~~~~~~~~~~~~l~~~l-----~~k~~LlVLDdv~~~~~~--~~~~~~~~l~~~~~~gs~IivTTR~~-~v~~~~- 302 (885)
+ .......++ ++.+.+.+ .+++-++|+|+++....- ..+...+- ....++.+|++|.+. .+...+
T Consensus 80 ~p~~~~~I~id~-iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLE---EPp~~~~fiL~t~~~~~llpTI~ 155 (325)
T PRK06871 80 EPIDNKDIGVDQ-VREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLE---EPRPNTYFLLQADLSAALLPTIY 155 (325)
T ss_pred ccccCCCCCHHH-HHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhc---CCCCCeEEEEEECChHhCchHHH
Confidence 0 000112222 22333333 356678899999765321 12211111 333456666666654 443222
Q ss_pred cccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCchhHH
Q 045686 303 GARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPLAL 355 (885)
Q Consensus 303 ~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai 355 (885)
+-...+.+.++++++..+.+....... ...+...++.++|.|..+
T Consensus 156 SRC~~~~~~~~~~~~~~~~L~~~~~~~--------~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 156 SRCQTWLIHPPEEQQALDWLQAQSSAE--------ISEILTALRINYGRPLLA 200 (325)
T ss_pred hhceEEeCCCCCHHHHHHHHHHHhccC--------hHHHHHHHHHcCCCHHHH
Confidence 234688999999999998887764211 112567788999999644
No 459
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=96.77 E-value=0.0048 Score=63.33 Aligned_cols=57 Identities=16% Similarity=0.091 Sum_probs=35.9
Q ss_pred HHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCCCCCEEEEEcCChhHHh
Q 045686 244 RANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQTGSKIVFTTRSEEVCG 300 (885)
Q Consensus 244 ~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~gs~IivTTR~~~v~~ 300 (885)
..-.+.+.+..++-+++||+.....|........ .+......|..||++|++.+...
T Consensus 144 qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~ 201 (237)
T PRK11614 144 QMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQAL 201 (237)
T ss_pred HHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHH
Confidence 3344666777788899999998877654331111 11112234788999999976443
No 460
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=96.77 E-value=0.009 Score=69.59 Aligned_cols=58 Identities=22% Similarity=0.208 Sum_probs=37.6
Q ss_pred hHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCCCCCEEEEEcCChhHHhhh
Q 045686 242 DGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQTGSKIVFTTRSEEVCGEM 302 (885)
Q Consensus 242 ~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~gs~IivTTR~~~v~~~~ 302 (885)
+...-.+.+.+..++-+++||+..+..|........ .+. .. +..||++|++.+....+
T Consensus 166 qkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~-~~--~~tvIiisHd~~~~~~~ 224 (552)
T TIGR03719 166 ERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQ-EY--PGTVVAVTHDRYFLDNV 224 (552)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHH-hC--CCeEEEEeCCHHHHHhh
Confidence 344445677777888999999999887765442211 111 11 24799999998765543
No 461
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.77 E-value=0.0061 Score=61.89 Aligned_cols=89 Identities=19% Similarity=0.284 Sum_probs=51.1
Q ss_pred HHHHHHHHhhc--CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHHHcCCCccccC
Q 045686 160 IISEVWRCIED--HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILRRFEIPDQMWI 237 (885)
Q Consensus 160 ~~~~l~~~L~~--~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~ 237 (885)
.+..+.++..+ .....+.++|.+|+|||+||..+++.... .-..+++++ ..++...+-..... .
T Consensus 84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~---~g~~v~~it------~~~l~~~l~~~~~~-----~ 149 (244)
T PRK07952 84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLL---RGKSVLIIT------VADIMSAMKDTFSN-----S 149 (244)
T ss_pred HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEE------HHHHHHHHHHHHhh-----c
Confidence 34444444432 22357889999999999999999998742 223455553 34444444333210 1
Q ss_pred CCChhHHHHHHHHHhcCCCeEEEEecCCCc
Q 045686 238 GKDEDGRANEILSNLRGKKFVLLLDDVWER 267 (885)
Q Consensus 238 ~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~ 267 (885)
..+.+ .+.+.+. +.-+||+||+...
T Consensus 150 ~~~~~----~~l~~l~-~~dlLvIDDig~~ 174 (244)
T PRK07952 150 ETSEE----QLLNDLS-NVDLLVIDEIGVQ 174 (244)
T ss_pred cccHH----HHHHHhc-cCCEEEEeCCCCC
Confidence 11122 2333344 4568899999654
No 462
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.77 E-value=0.0053 Score=61.10 Aligned_cols=102 Identities=22% Similarity=0.205 Sum_probs=55.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhc---cCCCC--c-------------cEEEEEEEcCcccH-HHHHHHHHH--Hc
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFR---DTGHD--F-------------DLVIWVKVSRDANL-EKIQESILR--RF 229 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~---~~~~~--f-------------~~~~wv~v~~~~~~-~~~~~~i~~--~l 229 (885)
.++.+++|+|+.|+|||||++.+..... +..+. + ..+.++.-...... ..+...+.. ..
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~ 110 (202)
T cd03233 31 KPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRC 110 (202)
T ss_pred CCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCCCcHHHHHhhhhhh
Confidence 5678999999999999999999998764 21110 0 01122211111100 112222211 11
Q ss_pred CCCccccCCCChhHHHHHHHHHhcCCCeEEEEecCCCcccccc
Q 045686 230 EIPDQMWIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSK 272 (885)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~ 272 (885)
........-+..+...-.+.+.+..++-++++|+.....|...
T Consensus 111 ~~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~ 153 (202)
T cd03233 111 KGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSST 153 (202)
T ss_pred ccccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHH
Confidence 1111000122334444467778888888999999988766543
No 463
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.76 E-value=0.018 Score=59.11 Aligned_cols=171 Identities=17% Similarity=0.178 Sum_probs=100.0
Q ss_pred CCccchhHHHHHHHHHhhc----CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHH-HHHHHH
Q 045686 152 GKTVGLDSIISEVWRCIED----HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEK-IQESIL 226 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~----~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~-~~~~i~ 226 (885)
..++|-.++..++-.++.. ++..-|.|+|+.|+|||+|...+..+.. ..-+..+-|........++ .+..|.
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q---~~~E~~l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQ---ENGENFLLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHH---hcCCeEEEEEECccchhhHHHHHHHH
Confidence 3488999999999888843 5566778999999999999988887732 2223334444444333322 344455
Q ss_pred HHcCCCccc--cCCCChhHHHHHHHHHhcC------CCeEEEEecCCCccccc-------cccccccccccCCCCCEEEE
Q 045686 227 RRFEIPDQM--WIGKDEDGRANEILSNLRG------KKFVLLLDDVWERLDLS-------KVGVSDLLDDSSQTGSKIVF 291 (885)
Q Consensus 227 ~~l~~~~~~--~~~~~~~~~~~~l~~~l~~------k~~LlVLDdv~~~~~~~-------~~~~~~~l~~~~~~gs~Iiv 291 (885)
.++...... ....+..+...++...|+. -++++|+|+++--.... -+.+.-. ...+-+-|-+
T Consensus 101 rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs---~r~Piciig~ 177 (408)
T KOG2228|consen 101 RQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQS---ARAPICIIGV 177 (408)
T ss_pred HHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhh---cCCCeEEEEe
Confidence 444322110 0122344445555556643 36899999886421100 0011111 2334566778
Q ss_pred EcCCh-------hHHhhhcccceeeccCCChHHHHHHHHHHhcC
Q 045686 292 TTRSE-------EVCGEMGARRRFRVECLSPEAALDLFRYKVGE 328 (885)
Q Consensus 292 TTR~~-------~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~ 328 (885)
|||-. .|-..+.-..++-++.++-++...++++....
T Consensus 178 Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll~v 221 (408)
T KOG2228|consen 178 TTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLLSV 221 (408)
T ss_pred eccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHhcC
Confidence 99963 23344444446677888888888888887743
No 464
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=96.76 E-value=0.0068 Score=72.86 Aligned_cols=134 Identities=20% Similarity=0.231 Sum_probs=74.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--cc--------------EEEEEEEcCcc-----------------c
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FD--------------LVIWVKVSRDA-----------------N 217 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~--------------~~~wv~v~~~~-----------------~ 217 (885)
.++..++|+|+.|+|||||++.+..-..+.++. ++ .+.+| +|++ .
T Consensus 505 ~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v--~Q~~~lF~gTIreNI~~g~~~~ 582 (711)
T TIGR00958 505 HPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALV--GQEPVLFSGSVRENIAYGLTDT 582 (711)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEE--ecCccccccCHHHHHhcCCCCC
Confidence 678999999999999999999998877543221 11 12222 2221 0
Q ss_pred HHHHHHHHHHHcCCCc---------ccc-----CC-CChhHHHHHHHHHhcCCCeEEEEecCCCcccccccccccccccc
Q 045686 218 LEKIQESILRRFEIPD---------QMW-----IG-KDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSDLLDDS 282 (885)
Q Consensus 218 ~~~~~~~i~~~l~~~~---------~~~-----~~-~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~~l~~~ 282 (885)
.++-..+.++..+... +.. .. +..+...-.+.+.+-.++-++|||++.+..|.+........ .
T Consensus 583 ~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~~--~ 660 (711)
T TIGR00958 583 PDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQES--R 660 (711)
T ss_pred CHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHHh--h
Confidence 1122223333333211 000 01 12233333467777788899999999887665432111111 2
Q ss_pred CCCCCEEEEEcCChhHHhhhcccceeec
Q 045686 283 SQTGSKIVFTTRSEEVCGEMGARRRFRV 310 (885)
Q Consensus 283 ~~~gs~IivTTR~~~v~~~~~~~~~~~l 310 (885)
..++..||++|+..+.... .++++.+
T Consensus 661 ~~~~~TvIiItHrl~~i~~--aD~IivL 686 (711)
T TIGR00958 661 SRASRTVLLIAHRLSTVER--ADQILVL 686 (711)
T ss_pred ccCCCeEEEEeccHHHHHh--CCEEEEE
Confidence 2346678888887766543 3455555
No 465
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.76 E-value=0.0013 Score=65.74 Aligned_cols=123 Identities=12% Similarity=0.126 Sum_probs=60.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhhc-cCCCCccEEEEEEEcCcccHHHHHHHHHHHcCCCcccc-CCCChhHHHHHHHH
Q 045686 173 EKVIGLYGMGGVGKTTLLKKLNNKFR-DTGHDFDLVIWVKVSRDANLEKIQESILRRFEIPDQMW-IGKDEDGRANEILS 250 (885)
Q Consensus 173 ~~vi~I~G~gG~GKTtLa~~v~~~~~-~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~~ 250 (885)
.+++.|+|+.|.||||+.+.+..... ...+.|-....+.+. .+.++...++...... ..++...-..++..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~-------~~d~i~~~l~~~~si~~~~S~f~~el~~l~~ 101 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIG-------LVDKIFTRMSSRESVSSGQSAFMIDLYQVSK 101 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEe-------eeeeeeeeeCCccChhhccchHHHHHHHHHH
Confidence 48999999999999999999874321 011222111000000 1111112222111000 11122222222222
Q ss_pred --HhcCCCeEEEEecCCCcccccc---ccc--cccccccCCCCCEEEEEcCChhHHhhh
Q 045686 251 --NLRGKKFVLLLDDVWERLDLSK---VGV--SDLLDDSSQTGSKIVFTTRSEEVCGEM 302 (885)
Q Consensus 251 --~l~~k~~LlVLDdv~~~~~~~~---~~~--~~~l~~~~~~gs~IivTTR~~~v~~~~ 302 (885)
.+..++.|+++|++....+..+ +.. ...+...+..+..+|+||++.+++...
T Consensus 102 ~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 102 ALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred HHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 2346889999999987765432 111 111100112245899999999887654
No 466
>PRK13695 putative NTPase; Provisional
Probab=96.75 E-value=0.0021 Score=62.34 Aligned_cols=24 Identities=46% Similarity=0.696 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhc
Q 045686 175 VIGLYGMGGVGKTTLLKKLNNKFR 198 (885)
Q Consensus 175 vi~I~G~gG~GKTtLa~~v~~~~~ 198 (885)
.|+|+|.+|+|||||++.+++...
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~ 25 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLK 25 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999988764
No 467
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.75 E-value=0.0062 Score=59.87 Aligned_cols=90 Identities=24% Similarity=0.251 Sum_probs=55.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcC-cccHHHHHHHHHHHcCCCcccc-CCCChhHHHHHHHH
Q 045686 173 EKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSR-DANLEKIQESILRRFEIPDQMW-IGKDEDGRANEILS 250 (885)
Q Consensus 173 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~~ 250 (885)
++|+.++|+.|+||||.+.+++..... . -..+..++... .....+-++..++.++.+.... ...+..+......+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~--~-~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~ 77 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKL--K-GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALE 77 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHH--T-T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhh--c-cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHH
Confidence 478999999999999888888877753 2 33466676542 2345566788889998764221 12234444443333
Q ss_pred Hhc-CCCeEEEEecCC
Q 045686 251 NLR-GKKFVLLLDDVW 265 (885)
Q Consensus 251 ~l~-~k~~LlVLDdv~ 265 (885)
... ++.=++++|=..
T Consensus 78 ~~~~~~~D~vlIDT~G 93 (196)
T PF00448_consen 78 KFRKKGYDLVLIDTAG 93 (196)
T ss_dssp HHHHTTSSEEEEEE-S
T ss_pred HHhhcCCCEEEEecCC
Confidence 333 344688888764
No 468
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.75 E-value=0.0075 Score=63.60 Aligned_cols=134 Identities=18% Similarity=0.250 Sum_probs=78.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--ccE------------EEEE----------EEcCc-----------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FDL------------VIWV----------KVSRD----------- 215 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~~------------~~wv----------~v~~~----------- 215 (885)
..+..++++|++|+||||+.+.++.-..+..+. |+. ++.| +|.++
T Consensus 27 ~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~ 106 (338)
T COG3839 27 EDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVP 106 (338)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhCCCc
Confidence 567899999999999999999999876542211 111 1111 11111
Q ss_pred -ccHHHHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccc-cccccccc-cCCCCCE
Q 045686 216 -ANLEKIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKV-GVSDLLDD-SSQTGSK 288 (885)
Q Consensus 216 -~~~~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~-~~~~~l~~-~~~~gs~ 288 (885)
...++-..+.++.+++.... ..-+..+...-.+.+.+-.++-++.+|+.-+..|..-- .....+.. ...-|..
T Consensus 107 k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T 186 (338)
T COG3839 107 KAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTT 186 (338)
T ss_pred hHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCc
Confidence 12234455667777664421 12233444455677888888889999998775543211 00000000 3344788
Q ss_pred EEEEcCChhHHhhhcc
Q 045686 289 IVFTTRSEEVCGEMGA 304 (885)
Q Consensus 289 IivTTR~~~v~~~~~~ 304 (885)
+|..|+++.-|..++.
T Consensus 187 ~IYVTHDq~EAmtlad 202 (338)
T COG3839 187 TIYVTHDQVEAMTLAD 202 (338)
T ss_pred EEEEcCCHHHHHhhCC
Confidence 9999999876665544
No 469
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.75 E-value=0.017 Score=65.05 Aligned_cols=173 Identities=14% Similarity=0.154 Sum_probs=90.7
Q ss_pred CccchhHHHHHHHHHh---h----c---CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHH
Q 045686 153 KTVGLDSIISEVWRCI---E----D---HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQ 222 (885)
Q Consensus 153 ~~vgr~~~~~~l~~~L---~----~---~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~ 222 (885)
++.|.+..++.+.+.. . . ...+-|.++|++|+|||.+|+.+++... ..| +-+.++ .+.
T Consensus 229 dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~---~~~---~~l~~~------~l~ 296 (489)
T CHL00195 229 DIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQ---LPL---LRLDVG------KLF 296 (489)
T ss_pred HhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC---CCE---EEEEhH------Hhc
Confidence 4568777666655422 1 0 3456688999999999999999998873 222 112111 111
Q ss_pred HHHHHHcCCCccccCCCChhHHHHHHHHHhcCCCeEEEEecCCCccc----ccc------cccc-ccccccCCCCCEEEE
Q 045686 223 ESILRRFEIPDQMWIGKDEDGRANEILSNLRGKKFVLLLDDVWERLD----LSK------VGVS-DLLDDSSQTGSKIVF 291 (885)
Q Consensus 223 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~----~~~------~~~~-~~l~~~~~~gs~Iiv 291 (885)
.. ..+.+...+...+...-...+.+|++|+++.... ... +... +..-.....+.-||.
T Consensus 297 ----~~-------~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIa 365 (489)
T CHL00195 297 ----GG-------IVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVA 365 (489)
T ss_pred ----cc-------ccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEE
Confidence 00 0111222222222222235789999999974311 000 0000 000001222334555
Q ss_pred EcCChhH-----HhhhcccceeeccCCChHHHHHHHHHHhcCcccC--CccchHHHHHHHHHHhCCch
Q 045686 292 TTRSEEV-----CGEMGARRRFRVECLSPEAALDLFRYKVGEDVYS--SHFEISNLAQTVVEECRGLP 352 (885)
Q Consensus 292 TTR~~~v-----~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~--~~~~~~~~~~~I~~~c~GlP 352 (885)
||.+.+- ...-.-...+.++.-+.++-.++|+.+....... ...+ ...+++.+.|..
T Consensus 366 TTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~d----l~~La~~T~GfS 429 (489)
T CHL00195 366 TANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYD----IKKLSKLSNKFS 429 (489)
T ss_pred ecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccC----HHHHHhhcCCCC
Confidence 7765432 1211234678899999999999998887543221 1222 456677776654
No 470
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.75 E-value=0.013 Score=61.54 Aligned_cols=59 Identities=15% Similarity=0.145 Sum_probs=36.7
Q ss_pred hHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCCCCCEEEEEcCChhHHhh
Q 045686 242 DGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQTGSKIVFTTRSEEVCGE 301 (885)
Q Consensus 242 ~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~gs~IivTTR~~~v~~~ 301 (885)
+...-.+.+.+...+-+++||+.....|........ .+.... .+..||++|++.+....
T Consensus 168 q~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tiiivsH~~~~~~~ 227 (276)
T PRK14271 168 QQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLA-DRLTVIIVTHNLAQAAR 227 (276)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHH
Confidence 344445677777788899999998877654332111 111122 24689999998875443
No 471
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=96.74 E-value=0.0072 Score=69.68 Aligned_cols=132 Identities=17% Similarity=0.240 Sum_probs=76.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhcc--CCCC--cc---------------EEEEEEEc----Cc------------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRD--TGHD--FD---------------LVIWVKVS----RD------------ 215 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~--~~~~--f~---------------~~~wv~v~----~~------------ 215 (885)
..+.+++|+|+.|+|||||++.++..... ..+. |+ .+.++.-. ..
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~ 108 (506)
T PRK13549 29 RAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKELSVLENIFLGNE 108 (506)
T ss_pred eCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhccc
Confidence 56789999999999999999999886542 1111 11 12222100 00
Q ss_pred ------cc---HHHHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccc
Q 045686 216 ------AN---LEKIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDD 281 (885)
Q Consensus 216 ------~~---~~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~ 281 (885)
.+ ......++++.+++.... ..-+..+...-.+.+.+..++-+++||+..+..|........ .+..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 188 (506)
T PRK13549 109 ITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRD 188 (506)
T ss_pred ccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 00 012234556666664211 011223444456777888899999999999887754331111 1111
Q ss_pred cCCCCCEEEEEcCChhHHhhh
Q 045686 282 SSQTGSKIVFTTRSEEVCGEM 302 (885)
Q Consensus 282 ~~~~gs~IivTTR~~~v~~~~ 302 (885)
....|..||++|++.+.+...
T Consensus 189 l~~~~~tvi~~tH~~~~~~~~ 209 (506)
T PRK13549 189 LKAHGIACIYISHKLNEVKAI 209 (506)
T ss_pred HHHCCCEEEEEeCcHHHHHHh
Confidence 223477899999998766543
No 472
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.74 E-value=0.0019 Score=64.02 Aligned_cols=111 Identities=17% Similarity=0.229 Sum_probs=62.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHH-HHHHHHHHHcCCCccccCCCChhHHHHHHHHHh
Q 045686 174 KVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLE-KIQESILRRFEIPDQMWIGKDEDGRANEILSNL 252 (885)
Q Consensus 174 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 252 (885)
.+|.|+|+.|+||||++..+..... ......+++ +.++.... .-...+..+-. .+.+.......++..+
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~---~~~~~~i~t-~e~~~E~~~~~~~~~i~q~~------vg~~~~~~~~~i~~aL 71 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYIN---KNKTHHILT-IEDPIEFVHESKRSLINQRE------VGLDTLSFENALKAAL 71 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhh---hcCCcEEEE-EcCCccccccCccceeeecc------cCCCccCHHHHHHHHh
Confidence 5789999999999999998877663 222233332 22211100 00000010000 1112334556677888
Q ss_pred cCCCeEEEEecCCCccccccccccccccccCCCCCEEEEEcCChhHHh
Q 045686 253 RGKKFVLLLDDVWERLDLSKVGVSDLLDDSSQTGSKIVFTTRSEEVCG 300 (885)
Q Consensus 253 ~~k~~LlVLDdv~~~~~~~~~~~~~~l~~~~~~gs~IivTTR~~~v~~ 300 (885)
+..+-++++|++.+........ . ....|..++.|++..++..
T Consensus 72 r~~pd~ii~gEird~e~~~~~l---~---~a~~G~~v~~t~Ha~~~~~ 113 (198)
T cd01131 72 RQDPDVILVGEMRDLETIRLAL---T---AAETGHLVMSTLHTNSAAK 113 (198)
T ss_pred cCCcCEEEEcCCCCHHHHHHHH---H---HHHcCCEEEEEecCCcHHH
Confidence 8888899999997654332221 1 2234667888888876543
No 473
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=96.74 E-value=0.0029 Score=65.97 Aligned_cols=60 Identities=20% Similarity=0.187 Sum_probs=38.3
Q ss_pred hHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-ccccc-CCCCCEEEEEcCChhHHhh
Q 045686 242 DGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDS-SQTGSKIVFTTRSEEVCGE 301 (885)
Q Consensus 242 ~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~-~~~gs~IivTTR~~~v~~~ 301 (885)
+...-.+.+.+..++-++++|+..+..|........ .+... ...|..||++|++.+.+..
T Consensus 157 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~ 218 (262)
T PRK09984 157 QQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALR 218 (262)
T ss_pred HHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 334445667777888999999998877655432111 11112 2247899999999875443
No 474
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.74 E-value=0.0011 Score=59.78 Aligned_cols=23 Identities=43% Similarity=0.613 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 045686 175 VIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 175 vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
+|+|.|++|+||||+|+.++...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998876
No 475
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=96.73 E-value=0.0081 Score=72.55 Aligned_cols=132 Identities=19% Similarity=0.221 Sum_probs=72.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--cc--------------EEEEEEEcCc------------------c
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FD--------------LVIWVKVSRD------------------A 216 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~--------------~~~wv~v~~~------------------~ 216 (885)
.++..++|+|+.|+|||||++.+..-..+..+. ++ .+.+|. |+ .
T Consensus 503 ~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~--Q~~~lf~gTi~eNi~l~~~~~ 580 (710)
T TIGR03796 503 QPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVD--QDIFLFEGTVRDNLTLWDPTI 580 (710)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEe--cCChhhhccHHHHhhCCCCCC
Confidence 678999999999999999999998876543221 11 122332 22 1
Q ss_pred cHHHHHHHHHHHcCCCc---------cc-----cC-CCChhHHHHHHHHHhcCCCeEEEEecCCCcccccccccc-cccc
Q 045686 217 NLEKIQESILRRFEIPD---------QM-----WI-GKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVS-DLLD 280 (885)
Q Consensus 217 ~~~~~~~~i~~~l~~~~---------~~-----~~-~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~-~~l~ 280 (885)
+.+++ .+.++..+... +. .. -+..+...-.+.+.+-.++-+++||+..+..|....... -.+
T Consensus 581 ~~~~i-~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l- 658 (710)
T TIGR03796 581 PDADL-VRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNL- 658 (710)
T ss_pred CHHHH-HHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHH-
Confidence 22222 22222222110 00 01 112233333567778888999999999987765432111 111
Q ss_pred ccCCCCCEEEEEcCChhHHhhhcccceeec
Q 045686 281 DSSQTGSKIVFTTRSEEVCGEMGARRRFRV 310 (885)
Q Consensus 281 ~~~~~gs~IivTTR~~~v~~~~~~~~~~~l 310 (885)
. ..+.++|++|+..+.... .++++.+
T Consensus 659 -~-~~~~T~IiitHrl~~i~~--~D~Iivl 684 (710)
T TIGR03796 659 -R-RRGCTCIIVAHRLSTIRD--CDEIIVL 684 (710)
T ss_pred -H-hcCCEEEEEecCHHHHHh--CCEEEEE
Confidence 1 135677777777655543 3455555
No 476
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=96.73 E-value=0.00084 Score=80.12 Aligned_cols=182 Identities=21% Similarity=0.264 Sum_probs=93.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhcc-CC------------CCccEEEEEEEcCcccHHHHHHHHHHHcCCCccccC
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRD-TG------------HDFDLVIWVKVSRDANLEKIQESILRRFEIPDQMWI 237 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~-~~------------~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~ 237 (885)
...+++.|+|+.+.||||+.+.+.-..-. .. ..|+ .++..++...++.. .
T Consensus 325 ~~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~-~i~~~ig~~~si~~----------------~ 387 (782)
T PRK00409 325 FDKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFK-EIFADIGDEQSIEQ----------------S 387 (782)
T ss_pred CCceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccc-eEEEecCCccchhh----------------c
Confidence 35678999999999999999988643210 00 1122 12222222211111 0
Q ss_pred CCChhHHHHHHHHHhc--CCCeEEEEecCCCccccccc---cccccccccCCCCCEEEEEcCChhHHhhhccccee---e
Q 045686 238 GKDEDGRANEILSNLR--GKKFVLLLDDVWERLDLSKV---GVSDLLDDSSQTGSKIVFTTRSEEVCGEMGARRRF---R 309 (885)
Q Consensus 238 ~~~~~~~~~~l~~~l~--~k~~LlVLDdv~~~~~~~~~---~~~~~l~~~~~~gs~IivTTR~~~v~~~~~~~~~~---~ 309 (885)
.++...-...+...+. ..+-|+++|++....|...- .... +......|+.+|+||+..+++........+ .
T Consensus 388 lStfS~~m~~~~~Il~~~~~~sLvLlDE~~~GtDp~eg~ala~ai-le~l~~~~~~vIitTH~~el~~~~~~~~~v~~~~ 466 (782)
T PRK00409 388 LSTFSGHMTNIVRILEKADKNSLVLFDELGAGTDPDEGAALAISI-LEYLRKRGAKIIATTHYKELKALMYNREGVENAS 466 (782)
T ss_pred hhHHHHHHHHHHHHHHhCCcCcEEEecCCCCCCCHHHHHHHHHHH-HHHHHHCCCEEEEECChHHHHHHHhcCCCeEEEE
Confidence 1111222222222322 47889999999877664322 1111 111234588999999998886654332211 1
Q ss_pred ccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCchhHHHHHHHHHhcCCChhhHHHHHHHHhc
Q 045686 310 VECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPLALVTIGHAMASRMGPTQWRYAVGELQR 380 (885)
Q Consensus 310 l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~l~~~~~~~~w~~~~~~l~~ 380 (885)
+. ++.+...-.++-..|.. . ...|-+|++++ |+|-.|..-|..+.. ......+.+++.+..
T Consensus 467 ~~-~d~~~l~~~Ykl~~G~~---g----~S~a~~iA~~~-Glp~~ii~~A~~~~~-~~~~~~~~li~~l~~ 527 (782)
T PRK00409 467 VE-FDEETLRPTYRLLIGIP---G----KSNAFEIAKRL-GLPENIIEEAKKLIG-EDKEKLNELIASLEE 527 (782)
T ss_pred EE-EecCcCcEEEEEeeCCC---C----CcHHHHHHHHh-CcCHHHHHHHHHHHh-hhhhHHHHHHHHHHH
Confidence 11 11111000010011111 1 23488888888 688888777776655 344566666666544
No 477
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=96.73 E-value=0.0076 Score=69.38 Aligned_cols=132 Identities=17% Similarity=0.179 Sum_probs=76.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--c---------------cEEEEEEEc----Cccc------------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--F---------------DLVIWVKVS----RDAN------------ 217 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f---------------~~~~wv~v~----~~~~------------ 217 (885)
..+.+++|+|+.|+|||||++.++....+..+. | ..+.++.-. ...+
T Consensus 28 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~ 107 (501)
T PRK11288 28 RAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPH 107 (501)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhccccc
Confidence 567899999999999999999998765322111 1 012222100 0000
Q ss_pred ---------HHHHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccC
Q 045686 218 ---------LEKIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSS 283 (885)
Q Consensus 218 ---------~~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~ 283 (885)
...-..++++.+++.... ..-+..+...-.+.+.+..++-+++||+..+..|........ .+....
T Consensus 108 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~ 187 (501)
T PRK11288 108 KGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELR 187 (501)
T ss_pred ccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHH
Confidence 011234456666664211 011223444455778888899999999999887765432111 111122
Q ss_pred CCCCEEEEEcCChhHHhhh
Q 045686 284 QTGSKIVFTTRSEEVCGEM 302 (885)
Q Consensus 284 ~~gs~IivTTR~~~v~~~~ 302 (885)
..|..||++|++.+.+...
T Consensus 188 ~~g~tiiiitHd~~~~~~~ 206 (501)
T PRK11288 188 AEGRVILYVSHRMEEIFAL 206 (501)
T ss_pred hCCCEEEEEeCCHHHHHHh
Confidence 3478899999998766543
No 478
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.73 E-value=0.0092 Score=61.88 Aligned_cols=58 Identities=19% Similarity=0.205 Sum_probs=36.9
Q ss_pred HHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCCCCCEEEEEcCChhHHhh
Q 045686 243 GRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQTGSKIVFTTRSEEVCGE 301 (885)
Q Consensus 243 ~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~gs~IivTTR~~~v~~~ 301 (885)
...-.+.+.+..++-+++||+..+..|........ .+... ..+..||++|++.+....
T Consensus 154 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~-~~~~tiii~sH~~~~~~~ 212 (252)
T PRK14272 154 QQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDL-KKVTTIIIVTHNMHQAAR 212 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCeEEEEeCCHHHHHH
Confidence 33445667777888899999998877654432111 11112 235789999998875543
No 479
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=96.73 E-value=0.0062 Score=70.19 Aligned_cols=130 Identities=16% Similarity=0.181 Sum_probs=76.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhc-cCCCC--cc---------------EEEEEEEcCc---------cc------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFR-DTGHD--FD---------------LVIWVKVSRD---------AN------ 217 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~-~~~~~--f~---------------~~~wv~v~~~---------~~------ 217 (885)
..+.+++|+|+.|+|||||++.++.... ...+. |+ .+.++. +. .+
T Consensus 286 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~--q~~~~~~~~~~~tv~e~l~ 363 (506)
T PRK13549 286 RRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVP--EDRKRDGIVPVMGVGKNIT 363 (506)
T ss_pred cCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeC--cchhhCCCcCCCCHHHHhh
Confidence 5678999999999999999999997643 11110 10 011111 11 00
Q ss_pred -----------------HHHHHHHHHHHcCCCc-c-c---cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccc
Q 045686 218 -----------------LEKIQESILRRFEIPD-Q-M---WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGV 275 (885)
Q Consensus 218 -----------------~~~~~~~i~~~l~~~~-~-~---~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~ 275 (885)
......++++.+++.. . . ..-+..+...-.+.+.+..++-++|||+..+..|......
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~ 443 (506)
T PRK13549 364 LAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYE 443 (506)
T ss_pred hhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHH
Confidence 0112345566666631 1 1 1122344555567778888888999999998877654322
Q ss_pred cc-cccccCCCCCEEEEEcCChhHHhhh
Q 045686 276 SD-LLDDSSQTGSKIVFTTRSEEVCGEM 302 (885)
Q Consensus 276 ~~-~l~~~~~~gs~IivTTR~~~v~~~~ 302 (885)
.. .+......|..||++|++.+.+...
T Consensus 444 l~~~l~~l~~~g~tvi~~sHd~~~~~~~ 471 (506)
T PRK13549 444 IYKLINQLVQQGVAIIVISSELPEVLGL 471 (506)
T ss_pred HHHHHHHHHHCCCEEEEECCCHHHHHHh
Confidence 11 1111223478899999998765543
No 480
>PRK09183 transposase/IS protein; Provisional
Probab=96.73 E-value=0.0035 Score=64.78 Aligned_cols=27 Identities=37% Similarity=0.393 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 045686 172 NEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (885)
Q Consensus 172 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 198 (885)
....+.|+|++|+|||+||..+++...
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~ 127 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAV 127 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 456788999999999999999987653
No 481
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.73 E-value=0.022 Score=61.25 Aligned_cols=158 Identities=11% Similarity=0.051 Sum_probs=82.0
Q ss_pred ccc-hhHHHHHHHHHhhcCCC-eEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHHHcCC
Q 045686 154 TVG-LDSIISEVWRCIEDHNE-KVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILRRFEI 231 (885)
Q Consensus 154 ~vg-r~~~~~~l~~~L~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~ 231 (885)
++| .+..++.+.+.+..++. ....++|+.|+||||+|+.+++..-.. ...... .+... ...+.+.. -..
T Consensus 7 i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~-~~~~~~---~cg~C----~~c~~~~~-~~h 77 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCL-ERNGVE---PCGTC----TNCKRIDS-GNH 77 (329)
T ss_pred HHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCC-CCCCCC---CCCcC----HHHHHHhc-CCC
Confidence 566 77778888888876654 566899999999999999997775321 100000 00000 00000000 000
Q ss_pred Cc-----cccCCCChhHHHHHHHHH-----hcCCCeEEEEecCCCccc--cccccccccccccCCCCCEEEEEcCChh-H
Q 045686 232 PD-----QMWIGKDEDGRANEILSN-----LRGKKFVLLLDDVWERLD--LSKVGVSDLLDDSSQTGSKIVFTTRSEE-V 298 (885)
Q Consensus 232 ~~-----~~~~~~~~~~~~~~l~~~-----l~~k~~LlVLDdv~~~~~--~~~~~~~~~l~~~~~~gs~IivTTR~~~-v 298 (885)
+. ........++... +.+. ..+++-++|+|++..... ...+...+- ....++.+|++|.+.. +
T Consensus 78 pD~~~i~~~~~~i~id~ir~-l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LE---EPp~~~~~Il~t~~~~~l 153 (329)
T PRK08058 78 PDVHLVAPDGQSIKKDQIRY-LKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLE---EPSGGTTAILLTENKHQI 153 (329)
T ss_pred CCEEEeccccccCCHHHHHH-HHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhc---CCCCCceEEEEeCChHhC
Confidence 00 0000111222222 2222 234566899999865432 111211111 2334666777776543 3
Q ss_pred Hhhh-cccceeeccCCChHHHHHHHHH
Q 045686 299 CGEM-GARRRFRVECLSPEAALDLFRY 324 (885)
Q Consensus 299 ~~~~-~~~~~~~l~~L~~~~~~~Lf~~ 324 (885)
...+ +-...+++.++++++....+.+
T Consensus 154 l~TIrSRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 154 LPTILSRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred cHHHHhhceeeeCCCCCHHHHHHHHHH
Confidence 2222 2346789999999999888864
No 482
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.73 E-value=0.0094 Score=62.06 Aligned_cols=59 Identities=20% Similarity=0.143 Sum_probs=36.6
Q ss_pred hHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCCCCCEEEEEcCChhHHhh
Q 045686 242 DGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQTGSKIVFTTRSEEVCGE 301 (885)
Q Consensus 242 ~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~gs~IivTTR~~~v~~~ 301 (885)
+...-.+.+.+..++-++++|+.....|........ .+.... .+..||++|++.+....
T Consensus 160 q~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~~~~~ 219 (259)
T PRK14274 160 QQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLK-EKYTIVIVTHNMQQAAR 219 (259)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEEcCHHHHHH
Confidence 334445677778888999999998877654331111 111122 25678889888765443
No 483
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.72 E-value=0.0092 Score=61.81 Aligned_cols=59 Identities=19% Similarity=0.133 Sum_probs=36.7
Q ss_pred hHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCCCCCEEEEEcCChhHHhh
Q 045686 242 DGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQTGSKIVFTTRSEEVCGE 301 (885)
Q Consensus 242 ~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~gs~IivTTR~~~v~~~ 301 (885)
+...-.+.+.+..++-++++|+..+..|........ .+.... .+..||++|++.+....
T Consensus 152 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~-~~~tiiivsH~~~~~~~ 211 (251)
T PRK14270 152 QQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELK-KEYTIVIVTHNMQQASR 211 (251)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH-hCCeEEEEEcCHHHHHH
Confidence 334445667777788899999998877655331111 111122 24678999998876544
No 484
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=96.72 E-value=0.0035 Score=67.37 Aligned_cols=130 Identities=15% Similarity=0.198 Sum_probs=75.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--cc-----------------EEEEEEEcCcc--------cHH----
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FD-----------------LVIWVKVSRDA--------NLE---- 219 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~-----------------~~~wv~v~~~~--------~~~---- 219 (885)
..+.+++|+|.+|+|||||++.+..-.....+. |+ .+.+| .+++ ++.
T Consensus 45 ~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v--~Q~~~~~l~p~~tv~~~i~ 122 (331)
T PRK15079 45 YEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMI--FQDPLASLNPRMTIGEIIA 122 (331)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEE--ecCchhhcCCCCCHHHHHH
Confidence 578899999999999999999998765432111 11 12222 1211 111
Q ss_pred ----------------HHHHHHHHHcCCCcc---c--cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-
Q 045686 220 ----------------KIQESILRRFEIPDQ---M--WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD- 277 (885)
Q Consensus 220 ----------------~~~~~i~~~l~~~~~---~--~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~- 277 (885)
....++++.+++... . ..-+..+...-.+...+..++-+||+|+..+..|........
T Consensus 123 ~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~ 202 (331)
T PRK15079 123 EPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVN 202 (331)
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH
Confidence 112234455555211 0 011223344445777888899999999998877654321111
Q ss_pred ccccc-CCCCCEEEEEcCChhHHhhh
Q 045686 278 LLDDS-SQTGSKIVFTTRSEEVCGEM 302 (885)
Q Consensus 278 ~l~~~-~~~gs~IivTTR~~~v~~~~ 302 (885)
.+... ...|..||++|++...+..+
T Consensus 203 lL~~l~~~~~~til~iTHdl~~~~~~ 228 (331)
T PRK15079 203 LLQQLQREMGLSLIFIAHDLAVVKHI 228 (331)
T ss_pred HHHHHHHHcCCEEEEEeCCHHHHHHh
Confidence 11111 22478999999998877654
No 485
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.72 E-value=0.0096 Score=61.67 Aligned_cols=58 Identities=21% Similarity=0.233 Sum_probs=36.7
Q ss_pred HHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCCCCCEEEEEcCChhHHhh
Q 045686 243 GRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQTGSKIVFTTRSEEVCGE 301 (885)
Q Consensus 243 ~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~gs~IivTTR~~~v~~~ 301 (885)
...-.+.+.+..++-++++|+.....|........ .+... ..|..||++|++.+....
T Consensus 155 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~~~tiiiisH~~~~~~~ 213 (251)
T PRK14244 155 QQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQEL-KKNFTIIVVTHSMKQAKK 213 (251)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCeEEEEeCCHHHHHh
Confidence 34445677777888999999998876654321111 11112 236789999998775543
No 486
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.72 E-value=0.0098 Score=62.24 Aligned_cols=58 Identities=22% Similarity=0.171 Sum_probs=36.4
Q ss_pred HHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCCCCCEEEEEcCChhHHhh
Q 045686 243 GRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQTGSKIVFTTRSEEVCGE 301 (885)
Q Consensus 243 ~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~gs~IivTTR~~~v~~~ 301 (885)
...-.+.+.+..++-+++||+.....|........ .+... ..+..||++|++.+.+..
T Consensus 170 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~~tiii~tH~~~~~~~ 228 (268)
T PRK14248 170 QQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITEL-KEEYSIIIVTHNMQQALR 228 (268)
T ss_pred HHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHH-hcCCEEEEEEeCHHHHHH
Confidence 33445667777788899999998877654332111 11112 225689999999775543
No 487
>PLN03211 ABC transporter G-25; Provisional
Probab=96.71 E-value=0.015 Score=68.57 Aligned_cols=151 Identities=17% Similarity=0.188 Sum_probs=84.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccC--CCC------------ccEEEEEEEcCcc------cH------------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDT--GHD------------FDLVIWVKVSRDA------NL------------ 218 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~--~~~------------f~~~~wv~v~~~~------~~------------ 218 (885)
.++.+++|+|++|+|||||.+.++...... .+. ...+.+|. +.. ++
T Consensus 92 ~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~--Q~~~l~~~lTV~E~l~~~a~~~~ 169 (659)
T PLN03211 92 SPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVT--QDDILYPHLTVRETLVFCSLLRL 169 (659)
T ss_pred ECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEEC--cccccCCcCCHHHHHHHHHHhCC
Confidence 577899999999999999999999875321 010 11122221 110 11
Q ss_pred ---------HHHHHHHHHHcCCCccc---------cCCCChhHHHHHHHHHhcCCCeEEEEecCCCcccccccccc-ccc
Q 045686 219 ---------EKIQESILRRFEIPDQM---------WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVS-DLL 279 (885)
Q Consensus 219 ---------~~~~~~i~~~l~~~~~~---------~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~-~~l 279 (885)
.+...++++.+|+.... ..-+..+...-.+...+..++-+++||+..+..|....... -.+
T Consensus 170 ~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L 249 (659)
T PLN03211 170 PKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTL 249 (659)
T ss_pred CCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHH
Confidence 11234566666664310 01122344444566777778889999999888765433111 111
Q ss_pred cccCCCCCEEEEEcCChh--HHhhhcccceeec------cCCChHHHHHHHHHH
Q 045686 280 DDSSQTGSKIVFTTRSEE--VCGEMGARRRFRV------ECLSPEAALDLFRYK 325 (885)
Q Consensus 280 ~~~~~~gs~IivTTR~~~--v~~~~~~~~~~~l------~~L~~~~~~~Lf~~~ 325 (885)
......|..||+||++.+ +....+ +.+-+ ..=+.+++.+.|...
T Consensus 250 ~~l~~~g~TvI~~sH~~~~~i~~~~D--~iilL~~G~iv~~G~~~~~~~~f~~~ 301 (659)
T PLN03211 250 GSLAQKGKTIVTSMHQPSSRVYQMFD--SVLVLSEGRCLFFGKGSDAMAYFESV 301 (659)
T ss_pred HHHHhCCCEEEEEecCCCHHHHHhhc--eEEEecCCcEEEECCHHHHHHHHHHC
Confidence 112235788999999864 333221 12111 112467788888665
No 488
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.70 E-value=0.0066 Score=62.09 Aligned_cols=120 Identities=12% Similarity=0.073 Sum_probs=69.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHHHcCCCcccc--------------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILRRFEIPDQMW-------------- 236 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~-------------- 236 (885)
+...++.|+|.+|+|||++|.++..... ..-..++|++..+. ...+..++ .+++......
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~~---~~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~ 96 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGAL---KQGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTE 96 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHHH---hCCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEecccc
Confidence 4678999999999999999999976542 22346888888654 34444443 3444322110
Q ss_pred ----CCCChhHHHHHHHHHhcC-CCeEEEEecCCCc---ccccccccc-ccccccCCCCCEEEEEcCCh
Q 045686 237 ----IGKDEDGRANEILSNLRG-KKFVLLLDDVWER---LDLSKVGVS-DLLDDSSQTGSKIVFTTRSE 296 (885)
Q Consensus 237 ----~~~~~~~~~~~l~~~l~~-k~~LlVLDdv~~~---~~~~~~~~~-~~l~~~~~~gs~IivTTR~~ 296 (885)
.....+.....+.+.+.. +.-++|+|.+... .+...+... ..+......|..+++|+...
T Consensus 97 ~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~ 165 (234)
T PRK06067 97 GFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILITLHPY 165 (234)
T ss_pred ccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Confidence 112234566666666654 6668999998632 111111110 00111133467788888754
No 489
>PRK06921 hypothetical protein; Provisional
Probab=96.70 E-value=0.0023 Score=66.34 Aligned_cols=39 Identities=28% Similarity=0.370 Sum_probs=29.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEE
Q 045686 172 NEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKV 212 (885)
Q Consensus 172 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v 212 (885)
....+.++|..|+|||+||..+++.... .....++|++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~--~~g~~v~y~~~ 154 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMR--KKGVPVLYFPF 154 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhh--hcCceEEEEEH
Confidence 4678899999999999999999998742 21234566654
No 490
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=96.70 E-value=0.0082 Score=69.16 Aligned_cols=132 Identities=17% Similarity=0.250 Sum_probs=76.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhcc--CCCC--cc---------------EEEEEEEcC----ccc----------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRD--TGHD--FD---------------LVIWVKVSR----DAN---------- 217 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~--~~~~--f~---------------~~~wv~v~~----~~~---------- 217 (885)
..+.+++|+|++|+|||||++.++..... ..+. ++ .+.++.-.. ..+
T Consensus 25 ~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~ 104 (500)
T TIGR02633 25 RPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNE 104 (500)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhcc
Confidence 56789999999999999999999886532 1111 10 122221100 000
Q ss_pred ------------HHHHHHHHHHHcCCCccc----c-CCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cc
Q 045686 218 ------------LEKIQESILRRFEIPDQM----W-IGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LL 279 (885)
Q Consensus 218 ------------~~~~~~~i~~~l~~~~~~----~-~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l 279 (885)
......++++.+++.... . .-+..+...-.+.+.+..++-+++||+..+..|........ .+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l 184 (500)
T TIGR02633 105 ITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDII 184 (500)
T ss_pred ccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH
Confidence 011234556666664311 0 11223444456777888889999999999887755432211 11
Q ss_pred cccCCCCCEEEEEcCChhHHhhh
Q 045686 280 DDSSQTGSKIVFTTRSEEVCGEM 302 (885)
Q Consensus 280 ~~~~~~gs~IivTTR~~~v~~~~ 302 (885)
......|..||++|++.+.+...
T Consensus 185 ~~l~~~g~tviiitHd~~~~~~~ 207 (500)
T TIGR02633 185 RDLKAHGVACVYISHKLNEVKAV 207 (500)
T ss_pred HHHHhCCCEEEEEeCcHHHHHHh
Confidence 11223578899999998766543
No 491
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.69 E-value=0.0057 Score=62.16 Aligned_cols=90 Identities=17% Similarity=0.211 Sum_probs=52.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHHH-cC---CCccccCCCChhH---
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILRR-FE---IPDQMWIGKDEDG--- 243 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~-l~---~~~~~~~~~~~~~--- 243 (885)
....++.|+|.+|+|||++|.+++.... ..-..++|++.. .++...+. +++.. .. ....-....+..+
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~~~---~~~~~v~yi~~e-~~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVEAA---KNGKKVIYIDTE-GLSPERFK-QIAGEDFEELLSNIIIFEPSSFEEQSE 95 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEECC-CCCHHHHH-HHHhhChHhHhhCeEEEeCCCHHHHHH
Confidence 4578999999999999999999988763 223568888876 45544432 23222 00 0000001122222
Q ss_pred HHHHHHHHhcCCCeEEEEecCC
Q 045686 244 RANEILSNLRGKKFVLLLDDVW 265 (885)
Q Consensus 244 ~~~~l~~~l~~k~~LlVLDdv~ 265 (885)
....+...+..+.-++|+|.+.
T Consensus 96 ~i~~~~~~~~~~~~lvVIDsi~ 117 (225)
T PRK09361 96 AIRKAEKLAKENVGLIVLDSAT 117 (225)
T ss_pred HHHHHHHHHHhcccEEEEeCcH
Confidence 2333344444566788889874
No 492
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=96.68 E-value=0.0066 Score=69.95 Aligned_cols=132 Identities=17% Similarity=0.206 Sum_probs=76.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhcc-CCCC--cc---------------EEEEEEEcC-------c----------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRD-TGHD--FD---------------LVIWVKVSR-------D---------- 215 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~-~~~~--f~---------------~~~wv~v~~-------~---------- 215 (885)
..+.+++|+|+.|+|||||.+.++....+ ..+. |+ .+.|+.-.. .
T Consensus 284 ~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~ 363 (500)
T TIGR02633 284 RRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLS 363 (500)
T ss_pred eCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcch
Confidence 56789999999999999999999876531 1110 10 011111000 0
Q ss_pred ----c------c---HHHHHHHHHHHcCCCcc--c---cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc
Q 045686 216 ----A------N---LEKIQESILRRFEIPDQ--M---WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD 277 (885)
Q Consensus 216 ----~------~---~~~~~~~i~~~l~~~~~--~---~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~ 277 (885)
. . ......++++.+++... . ..-+..+...-.+.+.+..++-+++||+..+..|........
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~ 443 (500)
T TIGR02633 364 VLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIY 443 (500)
T ss_pred hhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHH
Confidence 0 0 01123456666776421 1 011234445556777888889999999999887765442211
Q ss_pred -cccccCCCCCEEEEEcCChhHHhhh
Q 045686 278 -LLDDSSQTGSKIVFTTRSEEVCGEM 302 (885)
Q Consensus 278 -~l~~~~~~gs~IivTTR~~~v~~~~ 302 (885)
.+......|..||++|++.+....+
T Consensus 444 ~~l~~l~~~g~tviivsHd~~~~~~~ 469 (500)
T TIGR02633 444 KLINQLAQEGVAIIVVSSELAEVLGL 469 (500)
T ss_pred HHHHHHHhCCCEEEEECCCHHHHHHh
Confidence 1111223477899999998765543
No 493
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.68 E-value=0.0082 Score=62.30 Aligned_cols=58 Identities=22% Similarity=0.190 Sum_probs=36.6
Q ss_pred HHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCCCCCEEEEEcCChhHHhh
Q 045686 243 GRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQTGSKIVFTTRSEEVCGE 301 (885)
Q Consensus 243 ~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~gs~IivTTR~~~v~~~ 301 (885)
...-.+.+.+..++-++++|+.....|........ .+... ..+..||++|++.+....
T Consensus 155 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~-~~~~tiii~sH~~~~~~~ 213 (253)
T PRK14267 155 RQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFEL-KKEYTIVLVTHSPAQAAR 213 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH-hhCCEEEEEECCHHHHHh
Confidence 33445677777888999999998876654331111 11112 235789999999876543
No 494
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.68 E-value=0.00025 Score=81.74 Aligned_cols=87 Identities=26% Similarity=0.198 Sum_probs=50.0
Q ss_pred hcCCcccEEecCCCCCCCc--CchhhhcccccceeeccCC--cccccC----hhhhccccccEeecCCcccccccCCccc
Q 045686 560 DSMDALEVLDLSYNLDLNQ--LPEEIGRLKNLHHLNLSNT--SIGCLP----TAIKRLIKLKVLLLDGIQCHLSIPEGVI 631 (885)
Q Consensus 560 ~~l~~L~~L~Ls~~~~i~~--lp~~i~~L~~L~~L~Ls~~--~i~~lp----~~i~~L~~L~~L~l~~~~~l~~lp~~~i 631 (885)
..++.|+.|.+.++..+.. +-.....+++|+.|+++++ .+...+ .....+.+|+.|+++.+..+...--..+
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 3467778888877766665 3344566778888888763 221111 2234557777777777753332221112
Q ss_pred -ccCcccceecccccc
Q 045686 632 -SSLSSLQVFSCFSTE 646 (885)
Q Consensus 632 -~~L~~L~~L~l~~~~ 646 (885)
..+++|++|.+.+|.
T Consensus 265 ~~~c~~L~~L~l~~c~ 280 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCS 280 (482)
T ss_pred HhhCCCcceEccCCCC
Confidence 236677777766555
No 495
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=96.68 E-value=0.0035 Score=67.78 Aligned_cols=127 Identities=21% Similarity=0.224 Sum_probs=75.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccE---E--EEEEEcC---------------c------ccHHHHHHH
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDL---V--IWVKVSR---------------D------ANLEKIQES 224 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~---~--~wv~v~~---------------~------~~~~~~~~~ 224 (885)
..++-.+++|..|+|||||.+++++-.- ..|.. + .++...+ . ....++...
T Consensus 104 ~~GrRYGLvGrNG~GKsTLLRaia~~~v---~~f~veqE~~g~~t~~~~~~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~ 180 (582)
T KOG0062|consen 104 SRGRRYGLVGRNGIGKSTLLRAIANGQV---SGFHVEQEVRGDDTEALQSVLESDTERLDFLAEEKELLAGLTLEEIYDK 180 (582)
T ss_pred ecccccceeCCCCCcHHHHHHHHHhcCc---CccCchhheeccchHHHhhhhhccHHHHHHHHhhhhhhccchHHHHHHH
Confidence 3567889999999999999999998431 22221 1 1111100 0 022344444
Q ss_pred HHHHcCCCcccc-----CCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccccccccCCCCCEEEEEcCChhHH
Q 045686 225 ILRRFEIPDQMW-----IGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSDLLDDSSQTGSKIVFTTRSEEVC 299 (885)
Q Consensus 225 i~~~l~~~~~~~-----~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~~l~~~~~~gs~IivTTR~~~v~ 299 (885)
|+..+|...+.. .-+..=.+.-.|.+++-.++-||.||+..+..|...+...-.. ....+.++||.|+++...
T Consensus 181 ~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~y--L~t~~~T~liVSHDr~FL 258 (582)
T KOG0062|consen 181 ILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENY--LQTWKITSLIVSHDRNFL 258 (582)
T ss_pred HHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHH--HhhCCceEEEEeccHHHH
Confidence 666676544210 0011113344577788889999999999998876554221110 122347899999998776
Q ss_pred hhh
Q 045686 300 GEM 302 (885)
Q Consensus 300 ~~~ 302 (885)
..+
T Consensus 259 n~V 261 (582)
T KOG0062|consen 259 NTV 261 (582)
T ss_pred HHH
Confidence 654
No 496
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.67 E-value=0.014 Score=60.63 Aligned_cols=60 Identities=18% Similarity=0.145 Sum_probs=38.4
Q ss_pred hhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCCCCCEEEEEcCChhHHhh
Q 045686 241 EDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQTGSKIVFTTRSEEVCGE 301 (885)
Q Consensus 241 ~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~gs~IivTTR~~~v~~~ 301 (885)
.+...-.+.+.+..++-++++|+.....|........ .+... ..+..||++|++.+....
T Consensus 153 G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~-~~~~tii~isH~~~~i~~ 213 (261)
T PRK14263 153 GQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVEL-KKDYTIALVTHNMQQAIR 213 (261)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCeEEEEeCCHHHHHH
Confidence 3444455777888899999999998876654332111 11112 236789999999875543
No 497
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=96.67 E-value=0.01 Score=61.44 Aligned_cols=59 Identities=20% Similarity=0.168 Sum_probs=37.5
Q ss_pred hHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCCCCCEEEEEcCChhHHhh
Q 045686 242 DGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQTGSKIVFTTRSEEVCGE 301 (885)
Q Consensus 242 ~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~gs~IivTTR~~~v~~~ 301 (885)
+...-.+.+.+..++-+++||++....|........ .+... ..+..||++|++.+....
T Consensus 151 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~-~~~~tiii~sH~~~~~~~ 210 (250)
T PRK14240 151 QQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQEL-KKDYTIVIVTHNMQQASR 210 (250)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCeEEEEEeCHHHHHh
Confidence 334445667777888899999998877654332111 11112 236789999999875544
No 498
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=96.66 E-value=0.0091 Score=65.07 Aligned_cols=130 Identities=15% Similarity=0.145 Sum_probs=76.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--cc----------------------EEEEEEEcCcc------cH--
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FD----------------------LVIWVKVSRDA------NL-- 218 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~----------------------~~~wv~v~~~~------~~-- 218 (885)
.++.+++|+|++|+|||||++.+.....+..+. ++ .+.++. +.+ ++
T Consensus 48 ~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vf--Q~~~l~p~~Tv~e 125 (382)
T TIGR03415 48 EEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVF--QKFALMPWLTVEE 125 (382)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEE--CCCcCCCCCcHHH
Confidence 467899999999999999999998876432110 11 122221 111 10
Q ss_pred ----------------HHHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-
Q 045686 219 ----------------EKIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD- 277 (885)
Q Consensus 219 ----------------~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~- 277 (885)
.....++++.+++.... ..-+..+...-.+.+.+..++-++++|+..+..|........
T Consensus 126 Ni~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~ 205 (382)
T TIGR03415 126 NVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQD 205 (382)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHH
Confidence 11234456666664311 011233444556788888999999999998877654321111
Q ss_pred cccc-cCCCCCEEEEEcCChhHHhhh
Q 045686 278 LLDD-SSQTGSKIVFTTRSEEVCGEM 302 (885)
Q Consensus 278 ~l~~-~~~~gs~IivTTR~~~v~~~~ 302 (885)
.+.. ....|..||++|++.+.+..+
T Consensus 206 ~L~~l~~~~~~TII~iTHdl~e~~~l 231 (382)
T TIGR03415 206 ELLELQAKLNKTIIFVSHDLDEALKI 231 (382)
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 1111 122378999999998765443
No 499
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.66 E-value=0.0033 Score=66.58 Aligned_cols=133 Identities=20% Similarity=0.236 Sum_probs=80.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--ccEE--------------------EE--EEEcCc-----------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FDLV--------------------IW--VKVSRD----------- 215 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~~~--------------------~w--v~v~~~----------- 215 (885)
.++.++++.|++|+||||+.+.++.-..+..+. +++. .| .+|.++
T Consensus 29 ~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~ 108 (352)
T COG3842 29 KKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKL 108 (352)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceeecCcccCCCCcHHHHhhhhhhhcCCC
Confidence 567899999999999999999998766543221 1111 11 111111
Q ss_pred --ccHHHHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCcccccc---ccccccccccCCCC
Q 045686 216 --ANLEKIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSK---VGVSDLLDDSSQTG 286 (885)
Q Consensus 216 --~~~~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~---~~~~~~l~~~~~~g 286 (885)
....+...++++.+++.... .+-+..++....+.+.|..++-+|.||+.-+..|..- +...+. .-....|
T Consensus 109 ~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk-~lq~~~g 187 (352)
T COG3842 109 KKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELK-ELQRELG 187 (352)
T ss_pred CHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHH-HHHHhcC
Confidence 01233455666666654421 1223455666678999999999999999987655321 111000 0023448
Q ss_pred CEEEEEcCChhHHhhhcc
Q 045686 287 SKIVFTTRSEEVCGEMGA 304 (885)
Q Consensus 287 s~IivTTR~~~v~~~~~~ 304 (885)
.+.|..|++++-|-.+..
T Consensus 188 iT~i~VTHDqeEAl~msD 205 (352)
T COG3842 188 ITFVYVTHDQEEALAMSD 205 (352)
T ss_pred CeEEEEECCHHHHhhhcc
Confidence 899999999877666543
No 500
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.66 E-value=0.047 Score=57.81 Aligned_cols=175 Identities=9% Similarity=0.031 Sum_probs=92.2
Q ss_pred HHHHHHHHHhhcCCC-eEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHHHcCCCc----
Q 045686 159 SIISEVWRCIEDHNE-KVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILRRFEIPD---- 233 (885)
Q Consensus 159 ~~~~~l~~~L~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~---- 233 (885)
...+++.+.+..++. ..+.+.|+.|+||+++|..++...--...... .+... ...+.+. .-..+.
T Consensus 10 ~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~-----~Cg~C----~sC~~~~-~g~HPD~~~i 79 (319)
T PRK06090 10 PVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSE-----ACGFC----HSCELMQ-SGNHPDLHVI 79 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCC-----CCCCC----HHHHHHH-cCCCCCEEEE
Confidence 445666666655554 47889999999999999998876532110000 01110 0000000 000000
Q ss_pred -cc--cCCCChhHHHHHHHHHh-----cCCCeEEEEecCCCccc--cccccccccccccCCCCCEEEEEcCCh-hHHhhh
Q 045686 234 -QM--WIGKDEDGRANEILSNL-----RGKKFVLLLDDVWERLD--LSKVGVSDLLDDSSQTGSKIVFTTRSE-EVCGEM 302 (885)
Q Consensus 234 -~~--~~~~~~~~~~~~l~~~l-----~~k~~LlVLDdv~~~~~--~~~~~~~~~l~~~~~~gs~IivTTR~~-~v~~~~ 302 (885)
+. ......++. +.+.+.+ .+++-++|+|++..... ...+...+- ....++.+|++|.+. .+...+
T Consensus 80 ~p~~~~~~I~vdqi-R~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLE---EPp~~t~fiL~t~~~~~lLpTI 155 (319)
T PRK06090 80 KPEKEGKSITVEQI-RQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLE---EPAPNCLFLLVTHNQKRLLPTI 155 (319)
T ss_pred ecCcCCCcCCHHHH-HHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhc---CCCCCeEEEEEECChhhChHHH
Confidence 00 001122222 2333333 24566899999976532 122211111 333456666666554 443332
Q ss_pred -cccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCchhHHHHH
Q 045686 303 -GARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPLALVTI 358 (885)
Q Consensus 303 -~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~ 358 (885)
+-...+.+.+++++++.+.+... +. . .+..+++.++|.|+.+..+
T Consensus 156 ~SRCq~~~~~~~~~~~~~~~L~~~-~~---~-------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 156 VSRCQQWVVTPPSTAQAMQWLKGQ-GI---T-------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred HhcceeEeCCCCCHHHHHHHHHHc-CC---c-------hHHHHHHHcCCCHHHHHHH
Confidence 23467899999999999888653 11 1 1456789999999977544
Done!