Query 045686
Match_columns 885
No_of_seqs 627 out of 4748
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 07:26:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045686.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045686hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 2.5E-46 8.6E-51 431.9 21.8 308 155-487 131-470 (549)
2 1vt4_I APAF-1 related killer D 100.0 6.4E-39 2.2E-43 371.3 17.1 286 153-481 129-436 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 1.1E-36 3.9E-41 390.6 28.2 314 149-487 121-451 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 1.4E-34 4.8E-39 339.6 25.1 310 150-486 122-450 (591)
5 4fmz_A Internalin; leucine ric 99.9 1.8E-25 6.2E-30 244.1 15.5 304 509-858 40-343 (347)
6 3v47_A TOLL-like receptor 5B a 99.9 4.5E-24 1.5E-28 242.3 17.9 335 507-862 26-409 (455)
7 4fmz_A Internalin; leucine ric 99.9 5.7E-24 1.9E-28 232.2 17.4 285 507-834 60-344 (347)
8 3o6n_A APL1; leucine-rich repe 99.9 1E-24 3.4E-29 242.1 10.7 307 511-862 43-353 (390)
9 4ecn_A Leucine-rich repeat pro 99.9 5.3E-24 1.8E-28 254.8 17.2 328 508-864 443-843 (876)
10 4eco_A Uncharacterized protein 99.9 7.1E-24 2.4E-28 249.8 15.4 339 509-866 202-605 (636)
11 1o6v_A Internalin A; bacterial 99.9 1.7E-23 5.7E-28 237.9 17.5 318 507-863 62-390 (466)
12 2id5_A Lingo-1, leucine rich r 99.9 1.6E-23 5.4E-28 239.3 16.8 292 513-834 32-331 (477)
13 2z63_A TOLL-like receptor 4, v 99.9 2.9E-23 9.9E-28 243.0 18.3 69 793-862 464-532 (570)
14 3vq2_A TLR4, TOLL-like recepto 99.9 1.4E-23 4.7E-28 247.5 15.3 134 513-650 32-168 (606)
15 1o6v_A Internalin A; bacterial 99.9 3.5E-23 1.2E-27 235.2 17.6 302 512-858 45-363 (466)
16 3oja_B Anopheles plasmodium-re 99.9 5.4E-24 1.8E-28 249.5 10.4 306 512-862 50-359 (597)
17 2z81_A CD282 antigen, TOLL-lik 99.9 3.4E-23 1.2E-27 241.1 16.3 339 513-862 26-511 (549)
18 3o6n_A APL1; leucine-rich repe 99.9 2.9E-23 1E-27 230.3 14.0 289 534-862 42-332 (390)
19 2id5_A Lingo-1, leucine rich r 99.9 6.5E-23 2.2E-27 234.2 15.0 310 517-862 15-334 (477)
20 2z7x_B TOLL-like receptor 1, v 99.9 1.5E-22 5.1E-27 234.0 17.7 334 513-862 21-482 (520)
21 3vq2_A TLR4, TOLL-like recepto 99.9 1.3E-22 4.5E-27 239.2 16.9 126 508-637 51-179 (606)
22 3t6q_A CD180 antigen; protein- 99.9 1.9E-22 6.5E-27 237.8 18.2 325 513-857 33-434 (606)
23 3bz5_A Internalin-J, INLJ; leu 99.9 1.1E-22 3.6E-27 229.2 14.7 221 512-774 41-261 (457)
24 3oja_B Anopheles plasmodium-re 99.9 1.6E-22 5.5E-27 236.9 16.0 283 509-834 71-356 (597)
25 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 4.2E-22 1.4E-26 232.2 18.1 126 513-647 52-181 (562)
26 3t6q_A CD180 antigen; protein- 99.9 4.9E-22 1.7E-26 234.2 18.3 329 508-858 52-459 (606)
27 2ft3_A Biglycan; proteoglycan, 99.9 2.4E-22 8.1E-27 217.7 12.1 291 514-834 34-331 (332)
28 4eco_A Uncharacterized protein 99.9 1.7E-22 5.9E-27 238.0 11.9 272 537-841 305-604 (636)
29 4fcg_A Uncharacterized protein 99.9 8.5E-22 2.9E-26 212.2 15.9 239 562-866 80-319 (328)
30 3bz5_A Internalin-J, INLJ; leu 99.9 5.6E-22 1.9E-26 223.3 15.1 294 507-839 58-354 (457)
31 4ecn_A Leucine-rich repeat pro 99.9 2.5E-22 8.4E-27 240.4 11.1 313 511-841 489-844 (876)
32 3v47_A TOLL-like receptor 5B a 99.9 9E-22 3.1E-26 223.4 14.6 308 508-840 49-412 (455)
33 3j0a_A TOLL-like receptor 5; m 99.9 3E-21 1E-25 235.5 20.0 138 507-650 20-163 (844)
34 1xku_A Decorin; proteoglycan, 99.9 1.1E-21 3.7E-26 212.3 14.0 291 514-833 32-329 (330)
35 2z63_A TOLL-like receptor 4, v 99.9 1.6E-21 5.4E-26 228.3 15.6 132 513-649 28-163 (570)
36 1ziw_A TOLL-like receptor 3; i 99.9 3.4E-21 1.1E-25 230.3 18.4 133 513-649 25-159 (680)
37 4fcg_A Uncharacterized protein 99.9 9E-22 3.1E-26 212.0 12.1 221 536-832 80-310 (328)
38 3rgz_A Protein brassinosteroid 99.9 4.2E-22 1.4E-26 240.3 10.0 317 510-856 220-546 (768)
39 2z7x_B TOLL-like receptor 1, v 99.9 4E-21 1.4E-25 221.9 17.2 124 516-649 3-129 (520)
40 4g8a_A TOLL-like receptor 4; l 99.8 1E-20 3.5E-25 224.5 18.3 133 513-650 52-188 (635)
41 3rgz_A Protein brassinosteroid 99.8 2E-21 7E-26 234.4 12.4 304 508-842 242-557 (768)
42 2z81_A CD282 antigen, TOLL-lik 99.8 4.3E-21 1.5E-25 223.4 12.8 311 508-839 45-513 (549)
43 1ogq_A PGIP-2, polygalacturona 99.8 2.4E-21 8.4E-26 207.3 9.7 90 743-841 220-309 (313)
44 2ft3_A Biglycan; proteoglycan, 99.8 1.2E-20 4.2E-25 204.1 13.6 282 538-855 34-327 (332)
45 1ziw_A TOLL-like receptor 3; i 99.8 3.3E-20 1.1E-24 221.8 18.6 239 517-778 8-283 (680)
46 3j0a_A TOLL-like receptor 5; m 99.8 1.3E-20 4.3E-25 229.9 15.2 149 517-679 8-159 (844)
47 1xku_A Decorin; proteoglycan, 99.8 3.1E-20 1E-24 200.9 16.3 247 538-843 32-282 (330)
48 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 7.2E-20 2.5E-24 213.2 18.9 127 514-649 32-160 (562)
49 3g06_A SSPH2 (leucine-rich rep 99.8 9E-20 3.1E-24 211.3 15.0 255 514-834 41-295 (622)
50 2z80_A TOLL-like receptor 2, v 99.8 3.9E-20 1.4E-24 202.0 10.4 181 537-731 52-237 (353)
51 3o53_A Protein LRIM1, AGAP0063 99.8 6.5E-21 2.2E-25 204.6 2.8 123 515-649 12-134 (317)
52 2z66_A Variable lymphocyte rec 99.8 2.6E-19 9E-24 191.3 14.0 125 517-648 11-139 (306)
53 3zyj_A Leucine-rich repeat-con 99.8 4.1E-19 1.4E-23 200.1 13.2 220 513-778 64-290 (440)
54 3zyj_A Leucine-rich repeat-con 99.8 1.5E-18 5.2E-23 195.4 17.7 218 563-834 64-290 (440)
55 1jl5_A Outer protein YOPM; leu 99.8 4E-19 1.4E-23 199.9 12.5 261 514-834 132-407 (454)
56 3zyi_A Leucine-rich repeat-con 99.8 4.5E-19 1.6E-23 200.4 13.0 220 513-778 75-301 (452)
57 3zyi_A Leucine-rich repeat-con 99.8 1.6E-18 5.6E-23 195.8 17.4 103 716-834 196-301 (452)
58 3g06_A SSPH2 (leucine-rich rep 99.8 4.6E-19 1.6E-23 205.4 13.1 257 538-861 41-297 (622)
59 1jl5_A Outer protein YOPM; leu 99.8 9.3E-19 3.2E-23 196.9 15.2 263 513-840 111-373 (454)
60 4g8a_A TOLL-like receptor 4; l 99.8 1.4E-18 4.8E-23 206.1 16.8 337 508-862 71-581 (635)
61 2z80_A TOLL-like receptor 2, v 99.8 1.4E-18 4.8E-23 189.7 14.2 271 536-834 30-312 (353)
62 1ogq_A PGIP-2, polygalacturona 99.8 9.1E-19 3.1E-23 187.3 9.9 248 513-816 50-308 (313)
63 1ozn_A Reticulon 4 receptor; N 99.7 3.2E-18 1.1E-22 180.8 11.1 216 516-779 14-237 (285)
64 3o53_A Protein LRIM1, AGAP0063 99.7 2.6E-18 8.9E-23 184.3 10.0 256 544-839 17-278 (317)
65 2z66_A Variable lymphocyte rec 99.7 8.3E-18 2.9E-22 179.6 13.5 238 541-834 11-259 (306)
66 3oja_A Leucine-rich immune mol 99.7 5.2E-19 1.8E-23 201.0 4.3 104 534-649 31-134 (487)
67 1wwl_A Monocyte differentiatio 99.7 2.7E-19 9.2E-24 191.5 0.3 221 539-810 65-307 (312)
68 1h6u_A Internalin H; cell adhe 99.7 3.9E-17 1.3E-21 174.1 12.6 84 559-648 37-120 (308)
69 3oja_A Leucine-rich immune mol 99.7 8.4E-17 2.9E-21 182.8 15.1 233 561-831 32-270 (487)
70 1ozn_A Reticulon 4 receptor; N 99.7 5.7E-17 2E-21 171.1 12.4 103 541-649 15-119 (285)
71 1wwl_A Monocyte differentiatio 99.7 9.1E-18 3.1E-22 179.6 6.3 241 534-834 40-307 (312)
72 2z62_A TOLL-like receptor 4, v 99.7 6.1E-17 2.1E-21 170.1 11.2 196 538-778 29-235 (276)
73 2xwt_C Thyrotropin receptor; s 99.7 4.8E-17 1.6E-21 166.8 9.6 93 549-648 23-118 (239)
74 3rfs_A Internalin B, repeat mo 99.7 2.8E-16 9.4E-21 164.4 13.8 225 535-823 17-246 (272)
75 1p9a_G Platelet glycoprotein I 99.7 1.7E-16 5.9E-21 167.3 11.4 129 512-648 9-137 (290)
76 1z7x_W Ribonuclease inhibitor; 99.7 4.6E-18 1.6E-22 193.2 -2.1 61 795-858 337-408 (461)
77 1h6u_A Internalin H; cell adhe 99.7 1.6E-16 5.6E-21 169.3 9.9 194 512-761 40-233 (308)
78 2o6q_A Variable lymphocyte rec 99.6 4.4E-16 1.5E-20 162.7 12.6 107 537-647 37-145 (270)
79 4ay9_X Follicle-stimulating ho 99.6 7.4E-16 2.5E-20 167.6 14.5 235 540-832 12-255 (350)
80 1z7x_W Ribonuclease inhibitor; 99.6 8.3E-18 2.8E-22 191.0 -1.5 314 512-838 55-412 (461)
81 2qen_A Walker-type ATPase; unk 99.6 4E-15 1.4E-19 162.1 19.7 294 151-482 11-349 (350)
82 2o6q_A Variable lymphocyte rec 99.6 1.6E-15 5.6E-20 158.4 15.8 195 539-810 18-216 (270)
83 3ogk_B Coronatine-insensitive 99.6 4.8E-17 1.6E-21 191.1 4.5 304 513-840 164-529 (592)
84 1w5s_A Origin recognition comp 99.6 3.8E-15 1.3E-19 166.3 19.1 310 152-477 22-387 (412)
85 3ogk_B Coronatine-insensitive 99.6 4.7E-17 1.6E-21 191.2 2.3 303 511-833 190-548 (592)
86 2xwt_C Thyrotropin receptor; s 99.6 3.2E-16 1.1E-20 160.6 8.1 107 537-648 31-144 (239)
87 3rfs_A Internalin B, repeat mo 99.6 4.3E-16 1.5E-20 163.0 8.7 196 513-783 41-238 (272)
88 2z62_A TOLL-like receptor 4, v 99.6 1.4E-15 4.6E-20 159.7 12.1 95 548-649 18-114 (276)
89 1p9a_G Platelet glycoprotein I 99.6 3.6E-15 1.2E-19 157.1 15.1 197 535-811 8-207 (290)
90 2fna_A Conserved hypothetical 99.6 2.3E-14 7.7E-19 156.6 21.1 290 151-481 12-356 (357)
91 1h6t_A Internalin B; cell adhe 99.6 2.7E-15 9.1E-20 158.4 13.2 189 536-778 23-211 (291)
92 2p1m_B Transport inhibitor res 99.6 1E-16 3.6E-21 188.3 -0.6 300 512-835 155-518 (594)
93 4glp_A Monocyte differentiatio 99.6 9.8E-16 3.3E-20 163.7 6.8 133 514-648 65-210 (310)
94 4ay9_X Follicle-stimulating ho 99.6 2.1E-15 7.1E-20 164.0 9.5 236 517-776 13-255 (350)
95 1m9s_A Internalin B; cell inva 99.6 5.1E-15 1.8E-19 171.3 12.9 189 536-778 20-208 (605)
96 2ast_B S-phase kinase-associat 99.6 6.7E-16 2.3E-20 167.3 4.6 245 539-841 49-310 (336)
97 2ast_B S-phase kinase-associat 99.6 7.2E-16 2.5E-20 167.0 3.4 240 515-810 49-304 (336)
98 2ca6_A RAN GTPase-activating p 99.6 4.7E-16 1.6E-20 171.9 1.0 88 559-648 28-135 (386)
99 1h6t_A Internalin B; cell adhe 99.5 6.7E-15 2.3E-19 155.3 7.8 102 536-647 45-146 (291)
100 2ca6_A RAN GTPase-activating p 99.5 7.9E-16 2.7E-20 170.0 -0.4 232 535-811 30-315 (386)
101 3goz_A Leucine-rich repeat-con 99.5 5E-15 1.7E-19 161.9 5.5 238 537-810 22-295 (362)
102 1m9s_A Internalin B; cell inva 99.5 4.1E-15 1.4E-19 172.2 5.0 125 512-648 42-166 (605)
103 3goz_A Leucine-rich repeat-con 99.5 6.6E-15 2.3E-19 160.9 4.8 244 554-834 13-295 (362)
104 4glp_A Monocyte differentiatio 99.5 4.2E-14 1.4E-18 150.9 10.8 88 561-649 89-183 (310)
105 3m19_A Variable lymphocyte rec 99.5 4.7E-14 1.6E-18 145.5 9.3 133 513-649 35-169 (251)
106 3cvr_A Invasion plasmid antige 99.5 7.2E-14 2.5E-18 159.8 10.2 84 695-782 161-245 (571)
107 4ezg_A Putative uncharacterize 99.5 2.9E-14 9.9E-19 141.1 5.9 149 510-678 41-191 (197)
108 3e6j_A Variable lymphocyte rec 99.5 6.5E-14 2.2E-18 142.1 8.6 132 513-648 40-172 (229)
109 1xeu_A Internalin C; cellular 99.5 8.5E-14 2.9E-18 144.3 9.6 167 534-754 16-182 (263)
110 2p1m_B Transport inhibitor res 99.5 1.8E-15 6E-20 177.8 -4.2 304 511-833 182-541 (594)
111 3m19_A Variable lymphocyte rec 99.5 9.4E-14 3.2E-18 143.3 9.1 129 514-649 15-145 (251)
112 3cvr_A Invasion plasmid antige 99.4 5.9E-13 2E-17 152.2 12.7 182 564-817 60-248 (571)
113 2v9t_B SLIT homolog 2 protein 99.4 3.7E-13 1.3E-17 135.5 9.3 131 513-647 32-164 (220)
114 2qby_B CDC6 homolog 3, cell di 99.4 1.1E-11 3.9E-16 136.6 22.1 301 152-476 20-354 (384)
115 4ezg_A Putative uncharacterize 99.4 6.2E-13 2.1E-17 131.4 10.6 151 559-754 40-191 (197)
116 1xeu_A Internalin C; cellular 99.4 3.8E-14 1.3E-18 147.0 1.7 123 513-648 19-141 (263)
117 2v9t_B SLIT homolog 2 protein 99.4 2.2E-13 7.6E-18 137.1 6.8 126 517-649 15-142 (220)
118 2o6s_A Variable lymphocyte rec 99.4 4.2E-13 1.4E-17 134.0 8.6 134 512-649 27-162 (208)
119 2qby_A CDC6 homolog 1, cell di 99.4 5.8E-12 2E-16 139.0 18.1 305 152-476 20-363 (386)
120 2v1u_A Cell division control p 99.4 9.8E-12 3.4E-16 137.2 19.8 304 152-476 19-366 (387)
121 1dce_A Protein (RAB geranylger 99.4 2.2E-14 7.5E-19 165.1 -1.9 119 696-829 443-566 (567)
122 1fnn_A CDC6P, cell division co 99.4 2.9E-11 1E-15 133.5 23.3 291 152-464 17-351 (389)
123 3qfl_A MLA10; coiled-coil, (CC 99.4 2.1E-13 7.1E-18 119.6 4.6 77 11-95 6-83 (115)
124 2o6s_A Variable lymphocyte rec 99.4 1.9E-12 6.6E-17 129.2 11.9 83 563-647 28-112 (208)
125 2v70_A SLIT-2, SLIT homolog 2 99.4 5.9E-13 2E-17 134.0 7.6 126 517-649 15-143 (220)
126 2je0_A Acidic leucine-rich nuc 99.3 6.2E-13 2.1E-17 124.9 6.3 125 513-643 17-148 (149)
127 3e6j_A Variable lymphocyte rec 99.3 9.9E-13 3.4E-17 133.3 8.2 126 516-649 22-149 (229)
128 2v70_A SLIT-2, SLIT homolog 2 99.3 6.5E-13 2.2E-17 133.7 6.6 133 513-649 32-167 (220)
129 2ell_A Acidic leucine-rich nuc 99.3 4.9E-13 1.7E-17 128.5 5.2 131 513-649 24-161 (168)
130 1a9n_A U2A', U2A'; complex (nu 99.3 3.2E-13 1.1E-17 130.8 3.6 126 513-646 19-151 (176)
131 2xot_A Amphoterin-induced prot 99.3 8.2E-13 2.8E-17 144.1 5.3 133 513-649 39-177 (361)
132 1a9n_A U2A', U2A'; complex (nu 99.3 1E-12 3.5E-17 127.2 3.5 138 531-681 13-153 (176)
133 2ell_A Acidic leucine-rich nuc 99.3 1.3E-12 4.5E-17 125.4 4.1 135 535-679 22-158 (168)
134 4b8c_D Glucose-repressible alc 99.3 2.9E-12 9.8E-17 152.3 7.8 149 513-678 173-326 (727)
135 2xot_A Amphoterin-induced prot 99.3 1.2E-12 4.1E-17 142.7 4.0 152 516-680 21-175 (361)
136 2je0_A Acidic leucine-rich nuc 99.3 1.8E-12 6.3E-17 121.7 4.7 130 535-675 15-147 (149)
137 4b8c_D Glucose-repressible alc 99.2 3.3E-12 1.1E-16 151.8 5.6 115 532-652 219-333 (727)
138 2o6r_A Variable lymphocyte rec 99.2 1.1E-11 3.7E-16 120.1 7.9 127 516-649 10-138 (177)
139 1w8a_A SLIT protein; signaling 99.2 7.8E-12 2.7E-16 122.8 6.5 127 516-649 11-140 (192)
140 2wfh_A SLIT homolog 2 protein 99.2 1.6E-11 5.3E-16 120.6 8.2 125 516-648 13-139 (193)
141 1dce_A Protein (RAB geranylger 99.2 1.4E-11 4.9E-16 141.6 7.6 104 538-649 442-547 (567)
142 2wfh_A SLIT homolog 2 protein 99.2 2.4E-11 8E-16 119.3 7.1 103 540-649 13-116 (193)
143 1w8a_A SLIT protein; signaling 99.2 2E-11 6.8E-16 119.9 5.5 104 540-650 11-117 (192)
144 1njg_A DNA polymerase III subu 99.1 5.9E-10 2E-14 114.1 16.7 197 152-362 23-231 (250)
145 1ds9_A Outer arm dynein; leuci 99.1 5.6E-13 1.9E-17 131.9 -7.7 109 534-649 45-154 (198)
146 2chg_A Replication factor C sm 99.1 8.8E-10 3E-14 111.1 15.0 186 152-361 17-206 (226)
147 3sb4_A Hypothetical leucine ri 99.1 2.4E-10 8.3E-15 122.8 9.7 283 536-855 24-328 (329)
148 3g39_A Variable lymphocyte rec 99.0 1.4E-10 4.7E-15 111.2 6.2 104 539-649 11-116 (170)
149 3sb4_A Hypothetical leucine ri 99.0 8.3E-10 2.9E-14 118.5 13.0 286 512-829 24-327 (329)
150 2r9u_A Variable lymphocyte rec 99.0 1.4E-10 4.6E-15 111.7 5.8 102 540-648 15-118 (174)
151 1ds9_A Outer arm dynein; leuci 99.0 2.4E-11 8.3E-16 120.0 -2.0 109 558-679 43-151 (198)
152 2o6r_A Variable lymphocyte rec 99.0 3.9E-10 1.3E-14 109.1 6.0 109 512-623 27-137 (177)
153 2r9u_A Variable lymphocyte rec 99.0 3.3E-10 1.1E-14 109.0 4.8 106 516-628 15-122 (174)
154 1sxj_B Activator 1 37 kDa subu 98.9 5.6E-09 1.9E-13 111.8 12.9 185 152-360 21-211 (323)
155 3g39_A Variable lymphocyte rec 98.9 1.3E-09 4.6E-14 104.3 5.9 101 515-621 11-113 (170)
156 4fdw_A Leucine rich hypothetic 98.9 1.9E-08 6.3E-13 110.4 15.0 104 532-644 131-235 (401)
157 3te6_A Regulatory protein SIR3 98.8 5.1E-08 1.7E-12 101.7 15.8 168 154-327 22-212 (318)
158 1hqc_A RUVB; extended AAA-ATPa 98.8 2.7E-08 9.1E-13 106.5 12.0 180 151-363 11-215 (324)
159 1iqp_A RFCS; clamp loader, ext 98.8 3.5E-08 1.2E-12 105.8 12.8 184 152-362 25-215 (327)
160 4fdw_A Leucine rich hypothetic 98.7 4.3E-08 1.5E-12 107.5 11.4 120 514-643 136-256 (401)
161 2ifg_A High affinity nerve gro 98.7 1.9E-08 6.4E-13 108.9 6.8 99 543-648 14-116 (347)
162 2chq_A Replication factor C sm 98.5 3.1E-07 1.1E-11 97.9 12.0 180 152-359 17-204 (319)
163 1sxj_A Activator 1 95 kDa subu 98.5 4.8E-07 1.6E-11 102.8 13.8 194 152-361 39-255 (516)
164 1jbk_A CLPB protein; beta barr 98.5 2.3E-07 7.8E-12 90.6 9.4 47 152-198 22-68 (195)
165 3bos_A Putative DNA replicatio 98.5 2.4E-07 8.3E-12 94.2 9.8 173 152-359 28-217 (242)
166 4fs7_A Uncharacterized protein 98.5 1.1E-06 3.7E-11 96.6 15.6 303 510-856 68-374 (394)
167 1jr3_A DNA polymerase III subu 98.5 9.4E-07 3.2E-11 96.5 14.1 193 152-359 16-221 (373)
168 2z4s_A Chromosomal replication 98.5 1.3E-06 4.3E-11 96.9 15.1 183 152-357 105-304 (440)
169 2ifg_A High affinity nerve gro 98.5 7.7E-08 2.6E-12 104.0 5.1 99 518-621 13-114 (347)
170 3h4m_A Proteasome-activating n 98.4 1.4E-06 4.8E-11 91.0 13.2 179 152-357 17-229 (285)
171 1sxj_E Activator 1 40 kDa subu 98.4 1.8E-06 6.3E-11 93.4 12.8 194 152-359 14-237 (354)
172 3un9_A NLR family member X1; l 98.4 2.2E-08 7.5E-13 108.7 -2.5 130 514-648 102-252 (372)
173 3un9_A NLR family member X1; l 98.3 6.5E-08 2.2E-12 105.0 0.6 110 535-649 45-169 (372)
174 4fs7_A Uncharacterized protein 98.3 2E-06 6.9E-11 94.5 11.9 299 508-853 89-393 (394)
175 3pvs_A Replication-associated 98.3 1.4E-05 4.7E-10 88.4 18.2 176 151-359 25-215 (447)
176 3e4g_A ATP synthase subunit S, 98.3 4.5E-07 1.6E-11 85.3 4.4 88 744-839 61-155 (176)
177 1sxj_D Activator 1 41 kDa subu 98.3 2E-06 6.8E-11 93.1 10.2 193 152-359 37-235 (353)
178 1l8q_A Chromosomal replication 98.2 1.3E-05 4.3E-10 85.4 13.8 175 152-354 11-203 (324)
179 2qz4_A Paraplegin; AAA+, SPG7, 98.2 4.5E-05 1.5E-09 78.3 17.3 182 152-358 6-221 (262)
180 3uk6_A RUVB-like 2; hexameric 98.2 1.4E-05 4.8E-10 86.9 13.9 47 152-198 44-95 (368)
181 3syl_A Protein CBBX; photosynt 98.1 1.3E-05 4.4E-10 84.8 12.8 152 153-328 32-219 (309)
182 1d2n_A N-ethylmaleimide-sensit 98.1 4.9E-05 1.7E-09 78.6 16.9 199 152-381 33-264 (272)
183 3cf0_A Transitional endoplasmi 98.1 5.4E-05 1.9E-09 79.4 17.0 175 152-354 15-223 (301)
184 1xwi_A SKD1 protein; VPS4B, AA 98.1 9.8E-05 3.4E-09 78.1 18.4 183 152-359 12-223 (322)
185 4gt6_A Cell surface protein; l 98.1 2.5E-05 8.7E-10 85.7 14.3 99 743-856 264-365 (394)
186 3u61_B DNA polymerase accessor 98.1 2.4E-05 8.3E-10 83.3 13.7 173 152-356 26-213 (324)
187 3d8b_A Fidgetin-like protein 1 98.1 4.7E-05 1.6E-09 81.9 15.7 182 152-360 84-296 (357)
188 2ra8_A Uncharacterized protein 98.0 2.6E-06 8.7E-11 91.6 5.0 15 559-573 135-149 (362)
189 2p65_A Hypothetical protein PF 98.0 4.5E-06 1.5E-10 80.8 6.2 47 152-198 22-68 (187)
190 3pfi_A Holliday junction ATP-d 98.0 0.00011 3.7E-09 78.7 17.4 175 152-360 29-228 (338)
191 2qp9_X Vacuolar protein sortin 98.0 6.3E-05 2.2E-09 80.8 15.5 180 152-359 51-261 (355)
192 3b9p_A CG5977-PA, isoform A; A 98.0 0.00016 5.5E-09 75.8 18.3 179 152-359 21-233 (297)
193 3eie_A Vacuolar protein sortin 98.0 4.1E-05 1.4E-09 81.3 13.8 181 152-359 18-228 (322)
194 3ec2_A DNA replication protein 98.0 7.3E-06 2.5E-10 78.9 6.9 120 157-296 19-143 (180)
195 3rw6_A Nuclear RNA export fact 98.0 1.6E-06 5.6E-11 88.1 2.0 80 560-641 167-257 (267)
196 3vfd_A Spastin; ATPase, microt 98.0 0.00012 4.2E-09 79.8 16.9 182 152-359 115-326 (389)
197 3e4g_A ATP synthase subunit S, 98.0 3.1E-06 1.1E-10 79.5 3.4 66 742-814 83-154 (176)
198 2zan_A Vacuolar protein sortin 97.9 0.00024 8.2E-09 78.7 18.3 183 152-359 134-345 (444)
199 1sxj_C Activator 1 40 kDa subu 97.9 3.6E-05 1.2E-09 82.5 10.7 173 152-355 25-208 (340)
200 4gt6_A Cell surface protein; l 97.9 0.0001 3.5E-09 80.8 13.6 122 514-644 65-191 (394)
201 1a5t_A Delta prime, HOLB; zinc 97.8 0.00018 6.2E-09 76.6 14.6 168 157-357 7-203 (334)
202 4b4t_J 26S protease regulatory 97.8 0.0005 1.7E-08 73.4 17.6 174 152-352 148-354 (405)
203 2ra8_A Uncharacterized protein 97.8 3.9E-05 1.3E-09 82.3 8.7 60 716-778 279-341 (362)
204 2w58_A DNAI, primosome compone 97.8 4.2E-05 1.4E-09 75.1 8.1 124 152-296 25-159 (202)
205 3pxg_A Negative regulator of g 97.8 0.00023 8E-09 79.4 15.1 149 152-327 180-339 (468)
206 2kjq_A DNAA-related protein; s 97.8 1.3E-05 4.5E-10 74.1 3.9 33 166-198 29-61 (149)
207 4h09_A Hypothetical leucine ri 97.8 0.00026 9E-09 77.0 14.9 123 513-645 46-168 (379)
208 4b4t_L 26S protease subunit RP 97.7 0.00053 1.8E-08 74.6 16.5 174 152-352 181-387 (437)
209 2r62_A Cell division protease 97.7 6.3E-05 2.2E-09 77.5 9.0 175 152-353 11-219 (268)
210 4b4t_H 26S protease regulatory 97.7 0.00075 2.6E-08 73.1 17.4 174 152-352 209-415 (467)
211 1lv7_A FTSH; alpha/beta domain 97.7 0.00079 2.7E-08 68.7 17.0 179 152-357 12-223 (257)
212 2pze_A Cystic fibrosis transme 97.7 0.00018 6.3E-09 71.7 11.7 135 171-310 32-202 (229)
213 1vpl_A ABC transporter, ATP-bi 97.7 0.00014 4.7E-09 73.8 10.9 130 171-302 39-212 (256)
214 3hu3_A Transitional endoplasmi 97.7 0.0004 1.4E-08 77.5 15.3 178 152-358 204-414 (489)
215 2cbz_A Multidrug resistance-as 97.7 0.00013 4.6E-09 73.1 10.1 136 171-310 29-201 (237)
216 1sgw_A Putative ABC transporte 97.7 6.5E-05 2.2E-09 73.8 7.6 129 171-301 33-198 (214)
217 1io0_A Tropomodulin; LRR prote 97.7 5.7E-06 1.9E-10 80.0 -0.4 56 561-617 63-128 (185)
218 1qvr_A CLPB protein; coiled co 97.7 0.00019 6.6E-09 86.7 12.8 157 152-326 170-345 (854)
219 1io0_A Tropomodulin; LRR prote 97.6 2.2E-05 7.7E-10 75.7 3.7 89 559-649 32-137 (185)
220 2olj_A Amino acid ABC transpor 97.6 0.00023 7.9E-09 72.4 11.3 130 171-302 48-225 (263)
221 3rw6_A Nuclear RNA export fact 97.6 1.3E-05 4.5E-10 81.4 2.0 88 559-650 137-235 (267)
222 4b4t_I 26S protease regulatory 97.6 0.00077 2.6E-08 72.2 15.5 173 152-352 182-388 (437)
223 2gno_A DNA polymerase III, gam 97.6 0.00015 5E-09 75.7 9.9 147 156-326 1-152 (305)
224 2zu0_C Probable ATP-dependent 97.6 0.00039 1.3E-08 71.1 12.5 129 171-301 44-229 (267)
225 1mv5_A LMRA, multidrug resista 97.6 0.00025 8.4E-09 71.6 10.9 136 171-310 26-210 (243)
226 2nq2_C Hypothetical ABC transp 97.6 0.00011 3.8E-09 74.4 8.4 130 171-302 29-195 (253)
227 3tui_C Methionine import ATP-b 97.6 0.00021 7.1E-09 75.7 10.6 130 171-302 52-230 (366)
228 3gfo_A Cobalt import ATP-bindi 97.6 0.00016 5.6E-09 74.0 9.5 130 171-302 32-210 (275)
229 3tif_A Uncharacterized ABC tra 97.6 0.00023 7.9E-09 71.3 10.3 128 171-300 29-210 (235)
230 4b4t_M 26S protease regulatory 97.6 0.00051 1.8E-08 74.6 13.6 173 152-352 181-387 (434)
231 2yz2_A Putative ABC transporte 97.6 0.00025 8.5E-09 72.5 10.6 129 171-301 31-203 (266)
232 2pcj_A ABC transporter, lipopr 97.6 0.00013 4.5E-09 72.5 8.3 127 171-299 28-203 (224)
233 1b0u_A Histidine permease; ABC 97.6 0.00028 9.6E-09 71.9 10.5 130 171-302 30-219 (262)
234 4b4t_K 26S protease regulatory 97.5 0.0011 3.8E-08 71.9 15.6 174 152-352 172-379 (428)
235 3pxi_A Negative regulator of g 97.5 0.00076 2.6E-08 80.5 15.8 149 152-327 180-339 (758)
236 4g1u_C Hemin import ATP-bindin 97.5 0.00022 7.4E-09 72.8 9.3 132 171-302 35-214 (266)
237 1ji0_A ABC transporter; ATP bi 97.5 0.00018 6E-09 72.4 8.4 129 171-301 30-204 (240)
238 1ofh_A ATP-dependent HSL prote 97.5 0.00064 2.2E-08 71.5 13.2 46 152-197 15-74 (310)
239 2d2e_A SUFC protein; ABC-ATPas 97.5 0.00024 8.2E-09 71.9 9.2 138 171-310 27-217 (250)
240 2ff7_A Alpha-hemolysin translo 97.5 0.00036 1.2E-08 70.4 9.8 135 171-310 33-216 (247)
241 2bbs_A Cystic fibrosis transme 97.5 0.00046 1.6E-08 71.2 10.7 136 171-310 62-231 (290)
242 2ce7_A Cell division protein F 97.5 0.0012 4.2E-08 72.9 14.8 174 152-352 16-221 (476)
243 3fvq_A Fe(3+) IONS import ATP- 97.5 0.00028 9.7E-09 74.6 9.3 131 171-303 28-206 (359)
244 3rlf_A Maltose/maltodextrin im 97.4 0.00037 1.3E-08 74.3 10.1 131 171-303 27-201 (381)
245 1z47_A CYSA, putative ABC-tran 97.4 0.00041 1.4E-08 73.4 10.4 131 171-303 39-213 (355)
246 2ixe_A Antigen peptide transpo 97.4 0.00072 2.5E-08 69.2 11.8 136 171-310 43-229 (271)
247 1r6b_X CLPA protein; AAA+, N-t 97.4 0.00095 3.3E-08 79.7 14.6 155 152-326 186-362 (758)
248 2pjz_A Hypothetical protein ST 97.4 0.00061 2.1E-08 69.2 11.0 126 171-302 29-191 (263)
249 1v43_A Sugar-binding transport 97.4 0.0005 1.7E-08 73.4 10.7 132 171-302 35-208 (372)
250 3co5_A Putative two-component 97.4 9E-05 3.1E-09 68.0 4.4 45 153-197 5-51 (143)
251 2it1_A 362AA long hypothetical 97.4 0.00047 1.6E-08 73.2 10.3 130 171-302 27-200 (362)
252 2qi9_C Vitamin B12 import ATP- 97.4 0.0002 6.7E-09 72.3 7.0 129 171-302 24-199 (249)
253 2onk_A Molybdate/tungstate ABC 97.4 0.00022 7.6E-09 71.5 7.4 129 171-302 23-193 (240)
254 1g6h_A High-affinity branched- 97.4 0.00025 8.4E-09 72.2 7.1 129 171-301 31-218 (257)
255 2ghi_A Transport protein; mult 97.3 0.00086 2.9E-08 68.2 11.0 134 171-310 44-226 (260)
256 3j16_B RLI1P; ribosome recycli 97.3 0.00063 2.2E-08 77.7 11.1 132 171-302 101-287 (608)
257 2yyz_A Sugar ABC transporter, 97.3 0.00051 1.7E-08 72.9 9.6 130 171-302 27-200 (359)
258 3nh6_A ATP-binding cassette SU 97.3 0.00035 1.2E-08 72.5 8.0 67 241-310 194-261 (306)
259 3d31_A Sulfate/molybdate ABC t 97.3 0.00066 2.3E-08 71.8 10.2 130 171-302 24-194 (348)
260 1oxx_K GLCV, glucose, ABC tran 97.3 0.0006 2.1E-08 72.4 9.7 130 171-302 29-207 (353)
261 3ozx_A RNAse L inhibitor; ATP 97.3 0.00056 1.9E-08 77.2 9.3 132 171-303 23-204 (538)
262 1g29_1 MALK, maltose transport 97.2 0.00091 3.1E-08 71.5 10.0 131 171-303 27-207 (372)
263 1ye8_A Protein THEP1, hypothet 97.2 0.00071 2.4E-08 64.4 8.3 24 175-198 2-25 (178)
264 1in4_A RUVB, holliday junction 97.2 0.0058 2E-07 64.8 16.0 174 152-359 25-223 (334)
265 4gp7_A Metallophosphoesterase; 97.2 1.8E-05 6.1E-10 75.3 -3.6 131 171-301 7-164 (171)
266 3t15_A Ribulose bisphosphate c 97.2 0.0015 5E-08 68.0 10.6 26 172-197 35-60 (293)
267 2ihy_A ABC transporter, ATP-bi 97.2 0.00055 1.9E-08 70.3 7.2 131 171-301 45-228 (279)
268 2c9o_A RUVB-like 1; hexameric 97.1 0.0019 6.4E-08 71.9 12.0 46 152-197 37-87 (456)
269 4fcw_A Chaperone protein CLPB; 97.1 0.00098 3.4E-08 70.2 9.1 46 153-198 18-72 (311)
270 2bjv_A PSP operon transcriptio 97.1 0.0014 4.9E-08 67.1 10.0 46 152-197 6-53 (265)
271 1ojl_A Transcriptional regulat 97.1 0.00088 3E-08 70.0 8.4 46 152-197 2-49 (304)
272 2ehv_A Hypothetical protein PH 97.1 0.00033 1.1E-08 71.2 4.5 25 171-195 28-52 (251)
273 3cf2_A TER ATPase, transitiona 97.0 0.0035 1.2E-07 73.4 13.3 174 153-353 205-408 (806)
274 3bk7_A ABC transporter ATP-bin 97.0 0.0011 3.9E-08 75.8 8.8 132 171-302 380-538 (607)
275 1yqt_A RNAse L inhibitor; ATP- 97.0 0.00091 3.1E-08 75.7 7.9 130 171-302 45-224 (538)
276 3m6a_A ATP-dependent protease 97.0 0.0035 1.2E-07 71.2 12.3 45 153-197 82-132 (543)
277 3bk7_A ABC transporter ATP-bin 97.0 0.00087 3E-08 76.8 7.4 130 171-302 115-294 (607)
278 2x8a_A Nuclear valosin-contain 97.0 0.021 7.1E-07 58.5 17.0 152 152-327 10-192 (274)
279 2cvh_A DNA repair and recombin 96.9 0.0021 7.2E-08 63.6 8.9 91 171-268 18-118 (220)
280 1yqt_A RNAse L inhibitor; ATP- 96.9 0.001 3.5E-08 75.3 7.0 132 171-302 310-468 (538)
281 3ozx_A RNAse L inhibitor; ATP 96.9 0.0009 3.1E-08 75.5 6.5 129 172-302 293-452 (538)
282 3hr8_A Protein RECA; alpha and 96.9 0.0074 2.5E-07 63.8 13.1 89 171-267 59-151 (356)
283 3j16_B RLI1P; ribosome recycli 96.9 0.0017 5.9E-08 74.2 8.8 129 174-302 379-534 (608)
284 3gd7_A Fusion complex of cysti 96.9 0.0011 3.9E-08 71.1 6.7 127 171-300 45-218 (390)
285 2w0m_A SSO2452; RECA, SSPF, un 96.9 0.0018 6E-08 64.9 7.7 120 171-296 21-168 (235)
286 3b5x_A Lipid A export ATP-bind 96.9 0.0032 1.1E-07 72.4 10.8 135 171-310 367-551 (582)
287 1ixz_A ATP-dependent metallopr 96.8 0.017 5.8E-07 58.5 14.9 173 152-352 16-221 (254)
288 1ypw_A Transitional endoplasmi 96.8 0.0029 9.8E-08 75.4 10.3 174 152-352 204-407 (806)
289 2qgz_A Helicase loader, putati 96.7 0.00094 3.2E-08 69.9 4.8 42 157-198 133-177 (308)
290 3n70_A Transport activator; si 96.7 0.0014 4.7E-08 60.1 5.3 45 153-197 2-48 (145)
291 2iw3_A Elongation factor 3A; a 96.7 0.0033 1.1E-07 74.9 9.6 126 171-302 459-611 (986)
292 2r44_A Uncharacterized protein 96.7 0.0049 1.7E-07 65.4 10.2 44 152-197 27-70 (331)
293 4a74_A DNA repair and recombin 96.7 0.0018 6.2E-08 64.6 5.9 96 171-267 23-137 (231)
294 2dhr_A FTSH; AAA+ protein, hex 96.6 0.04 1.4E-06 61.2 17.2 170 152-352 31-236 (499)
295 3qf4_A ABC transporter, ATP-bi 96.6 0.0032 1.1E-07 72.3 8.6 66 242-310 484-550 (587)
296 2yl4_A ATP-binding cassette SU 96.6 0.0035 1.2E-07 72.2 8.8 135 171-310 368-554 (595)
297 4a82_A Cystic fibrosis transme 96.6 0.0024 8.2E-08 73.3 7.3 135 171-310 365-548 (578)
298 1n0w_A DNA repair protein RAD5 96.6 0.0054 1.9E-07 61.7 9.2 97 171-268 22-132 (243)
299 1iy2_A ATP-dependent metallopr 96.6 0.038 1.3E-06 56.7 15.7 173 152-352 40-245 (278)
300 3pxi_A Negative regulator of g 96.6 0.004 1.4E-07 74.2 9.2 46 152-197 491-545 (758)
301 2vhj_A Ntpase P4, P4; non- hyd 96.5 0.0027 9.3E-08 65.4 6.4 70 172-266 122-193 (331)
302 3b60_A Lipid A export ATP-bind 96.5 0.0025 8.6E-08 73.2 6.8 135 171-310 367-551 (582)
303 1v5w_A DMC1, meiotic recombina 96.4 0.015 5.1E-07 61.8 11.3 95 171-266 120-230 (343)
304 4h09_A Hypothetical leucine ri 96.4 0.0028 9.7E-08 68.7 5.7 105 532-643 235-341 (379)
305 2b8t_A Thymidine kinase; deoxy 96.3 0.0015 5.3E-08 64.2 2.8 117 171-297 10-127 (223)
306 2zr9_A Protein RECA, recombina 96.3 0.0098 3.3E-07 63.1 9.1 89 171-267 59-151 (349)
307 2z43_A DNA repair and recombin 96.3 0.013 4.5E-07 61.7 10.0 95 171-266 105-214 (324)
308 3jvv_A Twitching mobility prot 96.2 0.0016 5.5E-08 69.2 2.6 116 170-300 120-235 (356)
309 2eyu_A Twitching motility prot 96.2 0.0043 1.5E-07 63.0 5.7 115 170-299 22-136 (261)
310 2iw3_A Elongation factor 3A; a 96.2 0.0058 2E-07 72.9 7.6 79 222-302 880-964 (986)
311 3ux8_A Excinuclease ABC, A sub 96.2 0.0083 2.9E-07 70.2 8.7 68 241-310 206-276 (670)
312 1rz3_A Hypothetical protein rb 96.2 0.005 1.7E-07 60.0 5.7 43 156-198 2-47 (201)
313 3io5_A Recombination and repai 96.2 0.012 4.1E-07 60.3 8.5 87 175-267 30-123 (333)
314 3qf4_B Uncharacterized ABC tra 96.1 0.0041 1.4E-07 71.6 5.2 64 244-310 498-562 (598)
315 1u94_A RECA protein, recombina 96.0 0.016 5.6E-07 61.4 9.1 88 171-266 61-152 (356)
316 3c8u_A Fructokinase; YP_612366 96.0 0.0051 1.8E-07 60.2 4.8 40 159-198 6-47 (208)
317 4aby_A DNA repair protein RECN 96.0 0.015 5.2E-07 63.8 9.0 64 244-310 302-368 (415)
318 2px0_A Flagellar biosynthesis 96.0 0.022 7.6E-07 58.8 9.6 87 172-264 104-191 (296)
319 1xp8_A RECA protein, recombina 95.9 0.02 6.8E-07 61.0 9.3 88 171-266 72-163 (366)
320 1vma_A Cell division protein F 95.9 0.024 8.1E-07 58.8 9.6 92 171-266 102-197 (306)
321 1r6b_X CLPA protein; AAA+, N-t 95.9 0.01 3.4E-07 70.9 7.7 46 152-197 458-512 (758)
322 3e70_C DPA, signal recognition 95.9 0.034 1.2E-06 58.2 10.8 58 171-231 127-185 (328)
323 4f4c_A Multidrug resistance pr 95.8 0.013 4.3E-07 73.9 8.0 29 171-199 442-470 (1321)
324 1pzn_A RAD51, DNA repair and r 95.7 0.023 7.8E-07 60.4 8.7 98 171-269 129-245 (349)
325 3thx_A DNA mismatch repair pro 95.7 0.012 4.1E-07 70.4 7.0 122 171-301 660-790 (934)
326 1zp6_A Hypothetical protein AT 95.6 0.0065 2.2E-07 58.5 3.8 27 171-197 7-33 (191)
327 2i1q_A DNA repair and recombin 95.6 0.024 8.1E-07 59.8 8.3 94 171-265 96-214 (322)
328 3dm5_A SRP54, signal recogniti 95.6 0.056 1.9E-06 58.6 11.2 27 172-198 99-125 (443)
329 3kl4_A SRP54, signal recogniti 95.6 0.064 2.2E-06 58.2 11.7 92 172-266 96-190 (433)
330 1jr3_D DNA polymerase III, del 95.6 0.071 2.4E-06 56.6 12.0 164 164-358 9-184 (343)
331 3lda_A DNA repair protein RAD5 95.5 0.046 1.6E-06 58.9 10.4 96 171-267 176-285 (400)
332 2pt7_A CAG-ALFA; ATPase, prote 95.5 0.014 4.9E-07 61.4 6.2 107 172-298 170-277 (330)
333 3g5u_A MCG1178, multidrug resi 95.5 0.013 4.5E-07 73.5 6.6 67 241-310 1175-1242(1284)
334 1qvr_A CLPB protein; coiled co 95.5 0.014 4.8E-07 70.4 6.6 46 153-198 559-613 (854)
335 2o8b_B DNA mismatch repair pro 95.4 0.01 3.5E-07 72.0 5.1 175 173-364 789-983 (1022)
336 1kgd_A CASK, peripheral plasma 95.4 0.0088 3E-07 57.0 3.7 26 172-197 4-29 (180)
337 3ice_A Transcription terminati 95.4 0.014 4.8E-07 61.3 5.3 52 164-216 164-216 (422)
338 3tr0_A Guanylate kinase, GMP k 95.4 0.0093 3.2E-07 58.1 3.8 26 172-197 6-31 (205)
339 1qhx_A CPT, protein (chloramph 95.3 0.0095 3.3E-07 56.5 3.7 25 173-197 3-27 (178)
340 3rfe_A Platelet glycoprotein I 95.3 0.017 5.9E-07 51.4 5.1 52 567-621 12-66 (130)
341 3uie_A Adenylyl-sulfate kinase 95.3 0.01 3.5E-07 57.7 4.0 30 169-198 21-50 (200)
342 3vaa_A Shikimate kinase, SK; s 95.3 0.0098 3.3E-07 57.7 3.7 27 171-197 23-49 (199)
343 3g5u_A MCG1178, multidrug resi 95.3 0.033 1.1E-06 69.9 9.3 135 171-310 414-597 (1284)
344 4eun_A Thermoresistant glucoki 95.3 0.01 3.5E-07 57.6 3.7 27 171-197 27-53 (200)
345 3rfe_A Platelet glycoprotein I 95.2 0.015 5E-07 51.9 4.3 56 590-648 11-68 (130)
346 1ewq_A DNA mismatch repair pro 95.2 0.0085 2.9E-07 70.3 3.5 117 173-301 576-703 (765)
347 4f4c_A Multidrug resistance pr 95.2 0.029 9.9E-07 70.6 8.5 29 171-199 1103-1131(1321)
348 3kb2_A SPBC2 prophage-derived 95.2 0.01 3.4E-07 56.0 3.4 24 174-197 2-25 (173)
349 2yhs_A FTSY, cell division pro 95.2 0.065 2.2E-06 58.7 10.0 29 171-199 291-319 (503)
350 3ux8_A Excinuclease ABC, A sub 95.2 0.023 7.8E-07 66.5 6.9 68 241-310 547-618 (670)
351 3tau_A Guanylate kinase, GMP k 95.1 0.012 4.1E-07 57.5 3.9 27 171-197 6-32 (208)
352 1kag_A SKI, shikimate kinase I 95.1 0.0097 3.3E-07 56.2 3.1 25 173-197 4-28 (173)
353 2dr3_A UPF0273 protein PH0284; 95.1 0.046 1.6E-06 54.9 8.3 41 171-214 21-61 (247)
354 2vf7_A UVRA2, excinuclease ABC 95.1 0.023 7.8E-07 67.0 6.7 68 242-311 735-806 (842)
355 1htw_A HI0065; nucleotide-bind 95.1 0.014 4.8E-07 54.0 3.8 27 171-197 31-57 (158)
356 3asz_A Uridine kinase; cytidin 95.0 0.012 4.3E-07 57.5 3.7 28 171-198 4-31 (211)
357 1cr0_A DNA primase/helicase; R 95.0 0.082 2.8E-06 54.8 10.1 40 171-212 33-72 (296)
358 3bh0_A DNAB-like replicative h 95.0 0.081 2.8E-06 55.3 10.1 53 171-228 66-118 (315)
359 1knq_A Gluconate kinase; ALFA/ 95.0 0.014 4.9E-07 55.1 4.0 26 172-197 7-32 (175)
360 3lw7_A Adenylate kinase relate 95.0 0.012 4E-07 55.7 3.2 20 174-193 2-21 (179)
361 1znw_A Guanylate kinase, GMP k 95.0 0.013 4.5E-07 57.2 3.6 27 171-197 18-44 (207)
362 2ffh_A Protein (FFH); SRP54, s 95.0 0.075 2.6E-06 57.5 9.8 90 172-265 97-190 (425)
363 2j41_A Guanylate kinase; GMP, 94.9 0.015 5E-07 56.8 3.8 26 172-197 5-30 (207)
364 2orw_A Thymidine kinase; TMTK, 94.9 0.0024 8.4E-08 61.0 -1.9 26 173-198 3-28 (184)
365 2ck3_D ATP synthase subunit be 94.9 0.19 6.6E-06 54.5 12.6 101 164-266 143-264 (482)
366 2yvu_A Probable adenylyl-sulfa 94.9 0.015 5.2E-07 55.6 3.8 28 171-198 11-38 (186)
367 3a00_A Guanylate kinase, GMP k 94.9 0.011 3.9E-07 56.5 2.8 25 174-198 2-26 (186)
368 1j8m_F SRP54, signal recogniti 94.9 0.12 4.1E-06 53.3 10.7 91 173-266 98-191 (297)
369 1lvg_A Guanylate kinase, GMP k 94.8 0.012 4.1E-07 57.0 2.8 26 172-197 3-28 (198)
370 1ly1_A Polynucleotide kinase; 94.8 0.016 5.6E-07 55.0 3.7 22 174-195 3-24 (181)
371 1ls1_A Signal recognition part 94.8 0.081 2.8E-06 54.6 9.1 89 172-264 97-189 (295)
372 3trf_A Shikimate kinase, SK; a 94.8 0.016 5.5E-07 55.3 3.5 25 173-197 5-29 (185)
373 2hf9_A Probable hydrogenase ni 94.7 0.029 9.9E-07 55.5 5.5 40 158-197 23-62 (226)
374 1g5t_A COB(I)alamin adenosyltr 94.7 0.019 6.4E-07 54.6 3.8 113 174-296 29-163 (196)
375 2ewv_A Twitching motility prot 94.7 0.0086 3E-07 64.3 1.6 113 170-298 133-246 (372)
376 1odf_A YGR205W, hypothetical 3 94.7 0.03 1E-06 57.6 5.7 28 171-198 29-56 (290)
377 3thx_B DNA mismatch repair pro 94.7 0.036 1.2E-06 66.1 7.0 121 171-300 671-800 (918)
378 2rhm_A Putative kinase; P-loop 94.7 0.018 6.3E-07 55.3 3.8 26 172-197 4-29 (193)
379 2jeo_A Uridine-cytidine kinase 94.7 0.019 6.4E-07 57.8 4.0 27 171-197 23-49 (245)
380 1z6g_A Guanylate kinase; struc 94.7 0.015 5E-07 57.4 3.1 27 171-197 21-47 (218)
381 2qor_A Guanylate kinase; phosp 94.7 0.015 5.1E-07 56.6 3.1 27 171-197 10-36 (204)
382 2r6a_A DNAB helicase, replicat 94.7 0.35 1.2E-05 53.4 14.6 52 171-226 201-252 (454)
383 3aez_A Pantothenate kinase; tr 94.7 0.019 6.4E-07 59.9 4.0 29 171-199 88-116 (312)
384 3t61_A Gluconokinase; PSI-biol 94.7 0.014 4.9E-07 56.7 2.9 25 173-197 18-42 (202)
385 2bdt_A BH3686; alpha-beta prot 94.6 0.016 5.6E-07 55.5 3.3 22 174-195 3-24 (189)
386 2ga8_A Hypothetical 39.9 kDa p 94.6 0.036 1.2E-06 58.0 6.0 43 155-197 2-48 (359)
387 1s96_A Guanylate kinase, GMP k 94.6 0.019 6.4E-07 56.5 3.7 28 171-198 14-41 (219)
388 3pih_A Uvrabc system protein A 94.6 0.15 5E-06 60.8 11.8 70 241-312 809-882 (916)
389 2qt1_A Nicotinamide riboside k 94.6 0.02 6.8E-07 55.9 3.8 27 171-197 19-45 (207)
390 1kht_A Adenylate kinase; phosp 94.6 0.019 6.4E-07 55.1 3.6 26 173-198 3-28 (192)
391 1tf7_A KAIC; homohexamer, hexa 94.6 0.019 6.7E-07 64.9 4.2 119 171-296 279-417 (525)
392 1y63_A LMAJ004144AAA protein; 94.6 0.021 7.1E-07 54.6 3.8 25 172-196 9-33 (184)
393 3ney_A 55 kDa erythrocyte memb 94.5 0.021 7.1E-07 54.8 3.6 27 171-197 17-43 (197)
394 3iij_A Coilin-interacting nucl 94.5 0.018 6E-07 54.8 3.1 26 172-197 10-35 (180)
395 1wb9_A DNA mismatch repair pro 94.5 0.065 2.2E-06 63.2 8.4 26 171-196 605-630 (800)
396 2wsm_A Hydrogenase expression/ 94.5 0.029 9.8E-07 55.3 4.6 42 156-197 13-54 (221)
397 1cke_A CK, MSSA, protein (cyti 94.4 0.021 7.2E-07 56.6 3.6 25 173-197 5-29 (227)
398 1nks_A Adenylate kinase; therm 94.4 0.021 7.1E-07 54.9 3.5 25 174-198 2-26 (194)
399 2xxa_A Signal recognition part 94.4 0.21 7E-06 54.5 11.7 92 172-265 99-193 (433)
400 3cm0_A Adenylate kinase; ATP-b 94.4 0.022 7.4E-07 54.5 3.5 26 172-197 3-28 (186)
401 3cf2_A TER ATPase, transitiona 94.4 0.092 3.2E-06 61.5 9.3 173 152-351 477-682 (806)
402 2c95_A Adenylate kinase 1; tra 94.4 0.024 8E-07 54.7 3.7 26 172-197 8-33 (196)
403 2bbw_A Adenylate kinase 4, AK4 94.4 0.023 7.9E-07 57.2 3.7 26 172-197 26-51 (246)
404 3umf_A Adenylate kinase; rossm 94.4 0.027 9.2E-07 55.0 4.0 27 171-197 27-53 (217)
405 2ze6_A Isopentenyl transferase 94.3 0.023 7.8E-07 57.4 3.6 24 174-197 2-25 (253)
406 1tev_A UMP-CMP kinase; ploop, 94.3 0.024 8.3E-07 54.5 3.8 25 173-197 3-27 (196)
407 1rj9_A FTSY, signal recognitio 94.3 0.027 9.2E-07 58.4 4.2 28 172-199 101-128 (304)
408 4e22_A Cytidylate kinase; P-lo 94.3 0.025 8.5E-07 57.1 3.9 27 171-197 25-51 (252)
409 1via_A Shikimate kinase; struc 94.3 0.019 6.5E-07 54.3 2.9 24 174-197 5-28 (175)
410 1zuh_A Shikimate kinase; alpha 94.3 0.023 8E-07 53.2 3.5 26 172-197 6-31 (168)
411 1sky_E F1-ATPase, F1-ATP synth 94.3 0.15 5.1E-06 55.5 10.1 94 171-266 149-256 (473)
412 3tlx_A Adenylate kinase 2; str 94.3 0.049 1.7E-06 54.6 6.0 42 156-197 10-53 (243)
413 2if2_A Dephospho-COA kinase; a 94.2 0.023 7.7E-07 55.3 3.3 22 174-195 2-23 (204)
414 3hws_A ATP-dependent CLP prote 94.2 0.037 1.3E-06 59.4 5.2 44 154-197 17-75 (363)
415 1jjv_A Dephospho-COA kinase; P 94.2 0.025 8.5E-07 55.1 3.5 22 174-195 3-24 (206)
416 2iyv_A Shikimate kinase, SK; t 94.2 0.02 6.9E-07 54.6 2.7 24 174-197 3-26 (184)
417 1uf9_A TT1252 protein; P-loop, 94.2 0.029 9.9E-07 54.4 3.9 26 171-196 6-31 (203)
418 2plr_A DTMP kinase, probable t 94.2 0.029 9.9E-07 54.9 3.9 26 173-198 4-29 (213)
419 2jaq_A Deoxyguanosine kinase; 94.2 0.026 8.7E-07 54.9 3.5 23 175-197 2-24 (205)
420 1ukz_A Uridylate kinase; trans 94.1 0.03 1E-06 54.4 3.9 26 172-197 14-39 (203)
421 1gvn_B Zeta; postsegregational 94.1 0.044 1.5E-06 56.4 5.3 26 172-197 32-57 (287)
422 3b9q_A Chloroplast SRP recepto 94.1 0.032 1.1E-06 57.8 4.2 29 171-199 98-126 (302)
423 1ex7_A Guanylate kinase; subst 94.1 0.023 7.8E-07 54.0 2.9 24 174-197 2-25 (186)
424 1g8p_A Magnesium-chelatase 38 94.1 0.019 6.5E-07 61.3 2.6 46 152-197 24-69 (350)
425 2j37_W Signal recognition part 94.1 0.29 1E-05 54.2 12.1 92 172-266 100-194 (504)
426 2bwj_A Adenylate kinase 5; pho 94.0 0.028 9.7E-07 54.3 3.5 25 173-197 12-36 (199)
427 2i3b_A HCR-ntpase, human cance 94.0 0.025 8.6E-07 54.1 3.0 25 174-198 2-26 (189)
428 3nbx_X ATPase RAVA; AAA+ ATPas 94.0 0.044 1.5E-06 60.9 5.3 43 153-197 23-65 (500)
429 1um8_A ATP-dependent CLP prote 94.0 0.048 1.6E-06 58.8 5.6 45 153-197 22-96 (376)
430 3b85_A Phosphate starvation-in 94.0 0.021 7E-07 55.7 2.4 33 171-204 20-52 (208)
431 2vli_A Antibiotic resistance p 94.0 0.021 7.1E-07 54.4 2.4 25 173-197 5-29 (183)
432 2cdn_A Adenylate kinase; phosp 94.0 0.033 1.1E-06 54.0 3.8 26 172-197 19-44 (201)
433 3a4m_A L-seryl-tRNA(SEC) kinas 94.0 0.033 1.1E-06 56.6 3.9 26 172-197 3-28 (260)
434 3tqc_A Pantothenate kinase; bi 93.9 0.051 1.8E-06 56.5 5.3 27 172-198 91-117 (321)
435 1e6c_A Shikimate kinase; phosp 93.9 0.026 8.9E-07 53.1 2.9 24 174-197 3-26 (173)
436 3lnc_A Guanylate kinase, GMP k 93.9 0.022 7.4E-07 56.8 2.4 27 171-197 25-52 (231)
437 2pez_A Bifunctional 3'-phospho 93.9 0.036 1.2E-06 52.5 3.9 27 172-198 4-30 (179)
438 1sq5_A Pantothenate kinase; P- 93.9 0.055 1.9E-06 56.4 5.5 27 171-197 78-104 (308)
439 2grj_A Dephospho-COA kinase; T 93.8 0.034 1.2E-06 53.3 3.6 27 171-197 10-36 (192)
440 2wwf_A Thymidilate kinase, put 93.8 0.033 1.1E-06 54.4 3.6 27 172-198 9-35 (212)
441 1aky_A Adenylate kinase; ATP:A 93.7 0.037 1.3E-06 54.5 3.7 26 172-197 3-28 (220)
442 1nn5_A Similar to deoxythymidy 93.7 0.036 1.2E-06 54.3 3.7 27 172-198 8-34 (215)
443 1zu4_A FTSY; GTPase, signal re 93.7 0.12 4.1E-06 53.9 7.8 28 171-198 103-130 (320)
444 4a1f_A DNAB helicase, replicat 93.7 0.16 5.3E-06 53.2 8.6 53 171-228 44-96 (338)
445 2pt5_A Shikimate kinase, SK; a 93.7 0.036 1.2E-06 51.8 3.5 23 175-197 2-24 (168)
446 1qf9_A UMP/CMP kinase, protein 93.7 0.036 1.2E-06 53.1 3.6 25 173-197 6-30 (194)
447 2v54_A DTMP kinase, thymidylat 93.7 0.039 1.3E-06 53.6 3.7 26 172-197 3-28 (204)
448 2p5t_B PEZT; postsegregational 93.7 0.047 1.6E-06 55.1 4.4 27 171-197 30-56 (253)
449 1fx0_B ATP synthase beta chain 93.6 0.22 7.6E-06 54.2 9.8 94 171-266 163-277 (498)
450 2r6f_A Excinuclease ABC subuni 93.6 0.19 6.6E-06 59.5 10.0 68 242-311 850-921 (972)
451 1xjc_A MOBB protein homolog; s 93.6 0.042 1.4E-06 51.1 3.6 27 172-198 3-29 (169)
452 2pbr_A DTMP kinase, thymidylat 93.6 0.037 1.3E-06 53.2 3.4 23 175-197 2-24 (195)
453 2r2a_A Uncharacterized protein 93.6 0.1 3.4E-06 50.3 6.4 23 174-196 6-28 (199)
454 1uj2_A Uridine-cytidine kinase 93.6 0.042 1.4E-06 55.5 3.9 27 171-197 20-46 (252)
455 1m7g_A Adenylylsulfate kinase; 93.6 0.066 2.2E-06 52.3 5.2 29 170-198 22-50 (211)
456 2og2_A Putative signal recogni 93.5 0.046 1.6E-06 57.9 4.2 28 172-199 156-183 (359)
457 1zd8_A GTP:AMP phosphotransfer 93.5 0.038 1.3E-06 54.8 3.4 26 172-197 6-31 (227)
458 2v9p_A Replication protein E1; 93.5 0.042 1.4E-06 56.7 3.6 27 171-197 124-150 (305)
459 1g41_A Heat shock protein HSLU 93.4 0.061 2.1E-06 58.4 5.0 46 152-197 15-74 (444)
460 3nwj_A ATSK2; P loop, shikimat 93.4 0.036 1.2E-06 55.6 3.0 25 173-197 48-72 (250)
461 3fb4_A Adenylate kinase; psych 93.4 0.042 1.4E-06 54.0 3.4 23 175-197 2-24 (216)
462 1tue_A Replication protein E1; 93.4 0.073 2.5E-06 50.8 4.8 39 159-197 43-82 (212)
463 2ygr_A Uvrabc system protein A 93.4 0.12 3.9E-06 61.6 7.6 68 242-311 868-939 (993)
464 3cmu_A Protein RECA, recombina 93.3 0.15 5.2E-06 65.3 9.0 87 171-265 1425-1515(2050)
465 1zak_A Adenylate kinase; ATP:A 93.3 0.04 1.4E-06 54.4 3.2 26 172-197 4-29 (222)
466 1vht_A Dephospho-COA kinase; s 93.3 0.054 1.8E-06 53.2 4.0 23 173-195 4-26 (218)
467 3dl0_A Adenylate kinase; phosp 93.2 0.045 1.6E-06 53.7 3.4 23 175-197 2-24 (216)
468 2z0h_A DTMP kinase, thymidylat 93.2 0.048 1.6E-06 52.5 3.4 24 175-198 2-25 (197)
469 2f6r_A COA synthase, bifunctio 93.0 0.056 1.9E-06 55.5 3.8 23 172-194 74-96 (281)
470 3r20_A Cytidylate kinase; stru 93.0 0.057 1.9E-06 53.3 3.6 25 173-197 9-33 (233)
471 3sr0_A Adenylate kinase; phosp 92.9 0.056 1.9E-06 52.4 3.4 23 175-197 2-24 (206)
472 2f1r_A Molybdopterin-guanine d 92.9 0.033 1.1E-06 52.2 1.6 26 174-199 3-28 (171)
473 3l0o_A Transcription terminati 92.8 0.046 1.6E-06 57.4 2.8 52 163-215 164-216 (427)
474 3fwy_A Light-independent proto 92.8 0.06 2.1E-06 56.0 3.7 40 171-213 46-85 (314)
475 2v3c_C SRP54, signal recogniti 92.8 0.047 1.6E-06 59.5 3.0 26 173-198 99-124 (432)
476 1gtv_A TMK, thymidylate kinase 92.7 0.031 1E-06 54.8 1.3 25 174-198 1-25 (214)
477 3ake_A Cytidylate kinase; CMP 92.7 0.062 2.1E-06 52.2 3.4 24 174-197 3-26 (208)
478 4eaq_A DTMP kinase, thymidylat 92.6 0.12 4.2E-06 51.1 5.5 27 172-198 25-51 (229)
479 2vp4_A Deoxynucleoside kinase; 92.6 0.054 1.8E-06 53.8 2.9 26 171-196 18-43 (230)
480 3be4_A Adenylate kinase; malar 92.6 0.062 2.1E-06 52.8 3.3 25 173-197 5-29 (217)
481 1ak2_A Adenylate kinase isoenz 92.5 0.076 2.6E-06 52.8 3.9 26 172-197 15-40 (233)
482 3d3q_A TRNA delta(2)-isopenten 92.4 0.072 2.5E-06 55.6 3.6 24 174-197 8-31 (340)
483 2q6t_A DNAB replication FORK h 92.4 0.42 1.4E-05 52.6 10.0 58 171-232 198-256 (444)
484 1np6_A Molybdopterin-guanine d 92.4 0.084 2.9E-06 49.6 3.7 27 172-198 5-31 (174)
485 2xb4_A Adenylate kinase; ATP-b 92.3 0.073 2.5E-06 52.5 3.5 23 175-197 2-24 (223)
486 1e4v_A Adenylate kinase; trans 92.2 0.073 2.5E-06 52.1 3.3 23 175-197 2-24 (214)
487 3lv8_A DTMP kinase, thymidylat 92.2 0.16 5.4E-06 50.3 5.7 37 172-210 26-62 (236)
488 3a8t_A Adenylate isopentenyltr 92.2 0.09 3.1E-06 54.7 4.0 26 172-197 39-64 (339)
489 3exa_A TRNA delta(2)-isopenten 92.1 0.092 3.2E-06 53.8 4.0 25 173-197 3-27 (322)
490 1tq4_A IIGP1, interferon-induc 92.1 0.11 3.8E-06 56.1 4.8 27 171-197 67-93 (413)
491 1q3t_A Cytidylate kinase; nucl 92.1 0.089 3E-06 52.4 3.8 27 171-197 14-40 (236)
492 3k1j_A LON protease, ATP-depen 92.1 0.11 3.7E-06 59.9 5.0 45 152-198 41-85 (604)
493 3p32_A Probable GTPase RV1496/ 92.1 0.16 5.4E-06 54.1 6.0 38 161-198 65-104 (355)
494 3cmu_A Protein RECA, recombina 92.1 0.28 9.6E-06 62.9 9.0 88 171-266 381-472 (2050)
495 1svm_A Large T antigen; AAA+ f 92.0 0.087 3E-06 56.2 3.7 27 171-197 167-193 (377)
496 3crm_A TRNA delta(2)-isopenten 92.0 0.088 3E-06 54.6 3.6 25 173-197 5-29 (323)
497 4tmk_A Protein (thymidylate ki 91.9 0.19 6.6E-06 48.8 5.9 53 173-227 3-55 (213)
498 3cmw_A Protein RECA, recombina 91.9 0.26 8.9E-06 62.4 8.4 85 172-264 382-470 (1706)
499 1nlf_A Regulatory protein REPA 91.9 0.082 2.8E-06 54.2 3.4 28 171-198 28-55 (279)
500 1oix_A RAS-related protein RAB 91.9 0.086 2.9E-06 50.5 3.3 25 173-197 29-53 (191)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=2.5e-46 Score=431.94 Aligned_cols=308 Identities=16% Similarity=0.177 Sum_probs=247.0
Q ss_pred cchhHHHHHHHHHhhcC---CCeEEEEEcCCCCcHHHHHHHHHh--hhccCCCCccEEEEEEEcCcc--cHHHHHHHHHH
Q 045686 155 VGLDSIISEVWRCIEDH---NEKVIGLYGMGGVGKTTLLKKLNN--KFRDTGHDFDLVIWVKVSRDA--NLEKIQESILR 227 (885)
Q Consensus 155 vgr~~~~~~l~~~L~~~---~~~vi~I~G~gG~GKTtLa~~v~~--~~~~~~~~f~~~~wv~v~~~~--~~~~~~~~i~~ 227 (885)
|||++++++|.++|... ..++|+|+||||+||||||+++|+ +.+. ..+|++++||++++.+ +...++..|+.
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~-~~~F~~~~wv~vs~~~~~~~~~~~~~il~ 209 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLI-GINYDSIVWLKDSGTAPKSTFDLFTDILL 209 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTB-TTTBSEEEEEECCCCSTTHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHH-hccCCcEEEEEECCCCCCCHHHHHHHHHH
Confidence 59999999999999543 679999999999999999999998 3444 4889999999999875 89999999999
Q ss_pred HcCCCcc-----ccCCCChhHHHHHHHHHhcCC-CeEEEEecCCCccccccccccccccccCCCCCEEEEEcCChhHHhh
Q 045686 228 RFEIPDQ-----MWIGKDEDGRANEILSNLRGK-KFVLLLDDVWERLDLSKVGVSDLLDDSSQTGSKIVFTTRSEEVCGE 301 (885)
Q Consensus 228 ~l~~~~~-----~~~~~~~~~~~~~l~~~l~~k-~~LlVLDdv~~~~~~~~~~~~~~l~~~~~~gs~IivTTR~~~v~~~ 301 (885)
+++.... .....+.+.+...+++.++++ ||||||||||+...+ . ++ ..+||+||||||++.|+..
T Consensus 210 ~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~----~~----~~~gs~ilvTTR~~~v~~~ 280 (549)
T 2a5y_B 210 MLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-R----WA----QELRLRCLVTTRDVEISNA 280 (549)
T ss_dssp HHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-H----HH----HHTTCEEEEEESBGGGGGG
T ss_pred HHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-c----cc----ccCCCEEEEEcCCHHHHHH
Confidence 9986531 112234556788999999996 999999999986544 1 11 2269999999999999987
Q ss_pred hc-ccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCchhHHHHHHHHHhcCCChhhHHHHHHHHhc
Q 045686 302 MG-ARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPLALVTIGHAMASRMGPTQWRYAVGELQR 380 (885)
Q Consensus 302 ~~-~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~l~~~~~~~~w~~~~~~l~~ 380 (885)
+. ....|+|++|++++||+||.+.++... .++++++++++|+++|+|+||||+++|+.|+.+ .|+.+ +.+..
T Consensus 281 ~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~--~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~----~w~~~-~~l~~ 353 (549)
T 2a5y_B 281 ASQTCEFIEVTSLEIDECYDFLEAYGMPMP--VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK----TFEKM-AQLNN 353 (549)
T ss_dssp CCSCEEEEECCCCCHHHHHHHHHHTSCCCC----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS----SHHHH-HHHHH
T ss_pred cCCCCeEEECCCCCHHHHHHHHHHHhcCCC--CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc----hHHHH-HHhHH
Confidence 75 446799999999999999999987653 246788899999999999999999999999764 35443 34433
Q ss_pred CcccccCCCCcccccccccccccccchhhhHHh-----------hhccCCCCceecHHHHHHHHHhc--CcCCCC----C
Q 045686 381 YPFKFAGMGNSVFPILRFSYDSLREDIFKTCFL-----------YCALFPEEHNITKDELIQLWIGE--GFLNGI----S 443 (885)
Q Consensus 381 ~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl-----------~~s~fp~~~~i~~~~li~~w~a~--g~~~~~----~ 443 (885)
..+... ...+..++.+||++||++ +|.||+ |||+||+++.|+ +++|+|+ ||+... .
T Consensus 354 ~l~~~~--~~~i~~~l~~Sy~~L~~~-lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~ 426 (549)
T 2a5y_B 354 KLESRG--LVGVECITPYSYKSLAMA-LQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQL 426 (549)
T ss_dssp HHHHHC--SSTTCCCSSSSSSSHHHH-HHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCC
T ss_pred Hhhccc--HHHHHHHHhcccccccHH-HHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCC
Confidence 322211 247999999999999996 999999 999999999999 8999999 999754 2
Q ss_pred CCChHHHHHHHHHHhcccccCCC-CCCcEEEehhHHHHHHHHhhc
Q 045686 444 PRDQGEYIIESLKLACLLERGEN-SEDSVKMHNLIRDMALELASE 487 (885)
Q Consensus 444 ~~~~~~~~l~~L~~~~ll~~~~~-~~~~~~mHdlv~~~a~~~~~~ 487 (885)
.++.++ ++++|+++||++.... ...+|+|||+||++|++++.+
T Consensus 427 ~~~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~ 470 (549)
T 2a5y_B 427 DDEVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDA 470 (549)
T ss_dssp THHHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCT
T ss_pred HHHHHH-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHH
Confidence 444555 9999999999997642 356899999999999988865
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=6.4e-39 Score=371.25 Aligned_cols=286 Identities=16% Similarity=0.212 Sum_probs=227.6
Q ss_pred CccchhHHHHHHHHHhhc-CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccE-EEEEEEcCcccHHHHHHHHHHHcC
Q 045686 153 KTVGLDSIISEVWRCIED-HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDL-VIWVKVSRDANLEKIQESILRRFE 230 (885)
Q Consensus 153 ~~vgr~~~~~~l~~~L~~-~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~-~~wv~v~~~~~~~~~~~~i~~~l~ 230 (885)
..|||++++++|.++|.+ +..++|+|+||||+||||||+++|++.++. .+|+. ++|+++++.++...++..|++.++
T Consensus 129 ~~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~-~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~ 207 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ-CKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHH-HHHSSCEEEEECCCSSSHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHH-HhCCCcEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 359999999999999965 568999999999999999999999876543 67885 999999999988888888777543
Q ss_pred CCc---cccCC------CChhHHHHHHHHHh---cCCCeEEEEecCCCccccccccccccccccCCCCCEEEEEcCChhH
Q 045686 231 IPD---QMWIG------KDEDGRANEILSNL---RGKKFVLLLDDVWERLDLSKVGVSDLLDDSSQTGSKIVFTTRSEEV 298 (885)
Q Consensus 231 ~~~---~~~~~------~~~~~~~~~l~~~l---~~k~~LlVLDdv~~~~~~~~~~~~~~l~~~~~~gs~IivTTR~~~v 298 (885)
... ..... .+.+.....+++.+ .++|+||||||||+...|..+ ..||+||||||++.+
T Consensus 208 ~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f----------~pGSRILVTTRd~~V 277 (1221)
T 1vt4_I 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF----------NLSCKILLTTRFKQV 277 (1221)
T ss_dssp HHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHH----------HSSCCEEEECSCSHH
T ss_pred hcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhh----------CCCeEEEEeccChHH
Confidence 211 00000 12344556677655 689999999999996555432 158999999999999
Q ss_pred Hhhhcccceeecc------CCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCchhHHHHHHHHHhcC-CChhhH
Q 045686 299 CGEMGARRRFRVE------CLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPLALVTIGHAMASR-MGPTQW 371 (885)
Q Consensus 299 ~~~~~~~~~~~l~------~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~l~~~-~~~~~w 371 (885)
+..+.....|.++ +|+++|||+||.+..+.. . .++..+| |+|+||||+++|+.|+.+ .+...|
T Consensus 278 a~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~----~---eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW 347 (1221)
T 1vt4_I 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR----P---QDLPREV---LTTNPRRLSIIAESIRDGLATWDNW 347 (1221)
T ss_dssp HHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCC----T---TTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHH
T ss_pred HHhcCCCeEEEecCccccCCcCHHHHHHHHHHHcCCC----H---HHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHH
Confidence 8755544567777 999999999999986432 1 1234444 999999999999999986 367778
Q ss_pred HHHHHHHhcCcccccCCCCcccccccccccccccchh-hhHHhhhccCCCCceecHHHHHHHHHhcCcCCCCCCCChHHH
Q 045686 372 RYAVGELQRYPFKFAGMGNSVFPILRFSYDSLREDIF-KTCFLYCALFPEEHNITKDELIQLWIGEGFLNGISPRDQGEY 450 (885)
Q Consensus 372 ~~~~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~-k~cfl~~s~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~ 450 (885)
... ....+..+|.+||+.||++ . |.||+|||+||+++.|+++.++.+|+++| ++.++.
T Consensus 348 ~~~-------------~~~~I~aaLelSYd~Lp~e-elK~cFL~LAIFPed~~I~~elLa~LW~aeG-------eedAe~ 406 (1221)
T 1vt4_I 348 KHV-------------NCDKLTTIIESSLNVLEPA-EYRKMFDRLSVFPPSAHIPTILLSLIWFDVI-------KSDVMV 406 (1221)
T ss_dssp HHC-------------SCHHHHHHHHHHHHHSCTT-HHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC-------SHHHHH
T ss_pred hcC-------------ChhHHHHHHHHHHHhCCHH-HHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC-------HHHHHH
Confidence 652 1247899999999999997 8 99999999999999999999999999887 236889
Q ss_pred HHHHHHHhcccccCCCCCCcEEEehhHHHHH
Q 045686 451 IIESLKLACLLERGENSEDSVKMHNLIRDMA 481 (885)
Q Consensus 451 ~l~~L~~~~ll~~~~~~~~~~~mHdlv~~~a 481 (885)
++++|+++||++.... ..+|+|||++++++
T Consensus 407 ~L~eLvdRSLLq~d~~-~~rYrMHDLllELr 436 (1221)
T 1vt4_I 407 VVNKLHKYSLVEKQPK-ESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHHHTSSSSSBCSS-SSEEBCCCHHHHHH
T ss_pred HHHHHHhhCCEEEeCC-CCEEEehHHHHHHh
Confidence 9999999999998532 67899999999965
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.1e-36 Score=390.62 Aligned_cols=314 Identities=22% Similarity=0.327 Sum_probs=253.1
Q ss_pred cCCCCccchhHHHHHHHHHhh--cCCCeEEEEEcCCCCcHHHHHHHHHhhhccC-CCCccEEEEEEEcCccc--HHHHHH
Q 045686 149 RPIGKTVGLDSIISEVWRCIE--DHNEKVIGLYGMGGVGKTTLLKKLNNKFRDT-GHDFDLVIWVKVSRDAN--LEKIQE 223 (885)
Q Consensus 149 ~~~~~~vgr~~~~~~l~~~L~--~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~-~~~f~~~~wv~v~~~~~--~~~~~~ 223 (885)
.+.+.||||++++++|.++|. ++..++|+|+||||+||||||+++|++.+.. ..+++.++|+++++... ....+.
T Consensus 121 ~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 200 (1249)
T 3sfz_A 121 QRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQ 200 (1249)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHH
T ss_pred CCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHH
Confidence 345679999999999999994 3578999999999999999999999986432 34667889999988543 444566
Q ss_pred HHHHHcCCCcc--ccCCCChhHHHHHHHHHhcCC--CeEEEEecCCCccccccccccccccccCCCCCEEEEEcCChhHH
Q 045686 224 SILRRFEIPDQ--MWIGKDEDGRANEILSNLRGK--KFVLLLDDVWERLDLSKVGVSDLLDDSSQTGSKIVFTTRSEEVC 299 (885)
Q Consensus 224 ~i~~~l~~~~~--~~~~~~~~~~~~~l~~~l~~k--~~LlVLDdv~~~~~~~~~~~~~~l~~~~~~gs~IivTTR~~~v~ 299 (885)
.++..++.... .....+.+.+...++..+.++ |+||||||||+...+..+ .+|++||||||++.++
T Consensus 201 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~----------~~~~~ilvTtR~~~~~ 270 (1249)
T 3sfz_A 201 NLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF----------DNQCQILLTTRDKSVT 270 (1249)
T ss_dssp HHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT----------CSSCEEEEEESSTTTT
T ss_pred HHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh----------cCCCEEEEEcCCHHHH
Confidence 77777765432 113456778888899999877 999999999987555432 4689999999999998
Q ss_pred hh-hcccceeeccC-CChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCchhHHHHHHHHHhcCCChhhHHHHHHH
Q 045686 300 GE-MGARRRFRVEC-LSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPLALVTIGHAMASRMGPTQWRYAVGE 377 (885)
Q Consensus 300 ~~-~~~~~~~~l~~-L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~l~~~~~~~~w~~~~~~ 377 (885)
.. +.....+.+++ |++++|++||...++... ++..+++++|+++|+|+||||+++|++|+.+. ..|..+++.
T Consensus 271 ~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~----~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~ 344 (1249)
T 3sfz_A 271 DSVMGPKHVVPVESGLGREKGLEILSLFVNMKK----EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQ 344 (1249)
T ss_dssp TTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCS----TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHH
T ss_pred HhhcCCceEEEecCCCCHHHHHHHHHHhhCCCh----hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHH
Confidence 54 45667889996 999999999999886432 23445699999999999999999999999854 579999999
Q ss_pred HhcCccccc-C----CCCcccccccccccccccchhhhHHhhhccCCCCceecHHHHHHHHHhcCcCCCCCCCChHHHHH
Q 045686 378 LQRYPFKFA-G----MGNSVFPILRFSYDSLREDIFKTCFLYCALFPEEHNITKDELIQLWIGEGFLNGISPRDQGEYII 452 (885)
Q Consensus 378 l~~~~~~~~-~----~~~~~~~~l~~sy~~L~~~~~k~cfl~~s~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~l 452 (885)
+....+..- . ..+.+..+|.+||+.||++ +|.||+|||+||+++.|+++.++.+|.++ ++.++.++
T Consensus 345 l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~-~~~~~~~l~~f~~~~~i~~~~~~~~~~~~--------~~~~~~~l 415 (1249)
T 3sfz_A 345 LQNKQFKRIRKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCVLWDLE--------TEEVEDIL 415 (1249)
T ss_dssp HHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTT-THHHHHHGGGSCTTCCEEHHHHHHHHTCC--------HHHHHHHH
T ss_pred HhhhhhhhcccccccchHHHHHHHHHHHHhCCHH-HHHHHHHhCccCCCCeeCHHHHHHHhCCC--------HHHHHHHH
Confidence 876643221 1 1135889999999999997 99999999999999999999999999764 35789999
Q ss_pred HHHHHhcccccCCC-CCCcEEEehhHHHHHHHHhhc
Q 045686 453 ESLKLACLLERGEN-SEDSVKMHNLIRDMALELASE 487 (885)
Q Consensus 453 ~~L~~~~ll~~~~~-~~~~~~mHdlv~~~a~~~~~~ 487 (885)
++|+++||++.... ...+|+||++||++|+..+.+
T Consensus 416 ~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~ 451 (1249)
T 3sfz_A 416 QEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRS 451 (1249)
T ss_dssp HHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGG
T ss_pred HHHHhccceEEecCCCceEEEecHHHHHHHHhhhhH
Confidence 99999999987542 233699999999999998765
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=1.4e-34 Score=339.63 Aligned_cols=310 Identities=20% Similarity=0.326 Sum_probs=237.5
Q ss_pred CCCCccchhHHHHHHHHHhhc--CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCc-cEEEEEEEcCcccHHHHH---H
Q 045686 150 PIGKTVGLDSIISEVWRCIED--HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDF-DLVIWVKVSRDANLEKIQ---E 223 (885)
Q Consensus 150 ~~~~~vgr~~~~~~l~~~L~~--~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f-~~~~wv~v~~~~~~~~~~---~ 223 (885)
+.+.||||+.++++|.++|.. +..++|+|+||||+||||||+.++++......+| +.++|++++... ...++ .
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~-~~~~~~~l~ 200 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQD-KSGLLMKLQ 200 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCC-HHHHHHHHH
T ss_pred CCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCc-hHHHHHHHH
Confidence 346799999999999999963 5679999999999999999999998764312567 589999998752 33333 3
Q ss_pred HHHHHcCCCc--cccCCCChhHHHHHHHHHhcC--CCeEEEEecCCCccccccccccccccccCCCCCEEEEEcCChhHH
Q 045686 224 SILRRFEIPD--QMWIGKDEDGRANEILSNLRG--KKFVLLLDDVWERLDLSKVGVSDLLDDSSQTGSKIVFTTRSEEVC 299 (885)
Q Consensus 224 ~i~~~l~~~~--~~~~~~~~~~~~~~l~~~l~~--k~~LlVLDdv~~~~~~~~~~~~~~l~~~~~~gs~IivTTR~~~v~ 299 (885)
.++..++... ......+.+.....+...+.+ +++||||||+|+...+.. ...|++||||||+..++
T Consensus 201 ~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~----------l~~~~~ilvTsR~~~~~ 270 (591)
T 1z6t_A 201 NLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKA----------FDSQCQILLTTRDKSVT 270 (591)
T ss_dssp HHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHT----------TCSSCEEEEEESCGGGG
T ss_pred HHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHH----------hcCCCeEEEECCCcHHH
Confidence 3444555211 111344567777888888876 789999999997543322 24589999999999887
Q ss_pred hhhcccceeec---cCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCchhHHHHHHHHHhcCCChhhHHHHHH
Q 045686 300 GEMGARRRFRV---ECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPLALVTIGHAMASRMGPTQWRYAVG 376 (885)
Q Consensus 300 ~~~~~~~~~~l---~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~l~~~~~~~~w~~~~~ 376 (885)
..+. ...+.+ ++|+++|+++||...++... ....+.+.+|+++|+|+||||..+|+.++.+ ...|..+++
T Consensus 271 ~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~~----~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~--~~~w~~~l~ 343 (591)
T 1z6t_A 271 DSVM-GPKYVVPVESSLGKEKGLEILSLFVNMKK----ADLPEQAHSIIKECKGSPLVVSLIGALLRDF--PNRWEYYLK 343 (591)
T ss_dssp TTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSCG----GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHS--TTCHHHHHH
T ss_pred HhcC-CCceEeecCCCCCHHHHHHHHHHHhCCCc----ccccHHHHHHHHHhCCCcHHHHHHHHHHhcC--chhHHHHHH
Confidence 6543 234444 58999999999999987532 1223468999999999999999999999885 347999998
Q ss_pred HHhcCccc-c----cCCCCcccccccccccccccchhhhHHhhhccCCCCceecHHHHHHHHHhcCcCCCCCCCChHHHH
Q 045686 377 ELQRYPFK-F----AGMGNSVFPILRFSYDSLREDIFKTCFLYCALFPEEHNITKDELIQLWIGEGFLNGISPRDQGEYI 451 (885)
Q Consensus 377 ~l~~~~~~-~----~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~s~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~ 451 (885)
.+...... . ......+..++.+||+.||++ .|.||++||+||+++.|+.+.++..|.++ .+.+..+
T Consensus 344 ~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~-~~~~l~~la~f~~~~~i~~~~l~~l~~~~--------~~~~~~~ 414 (591)
T 1z6t_A 344 QLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCILWDME--------TEEVEDI 414 (591)
T ss_dssp HHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTT-THHHHHHGGGCCTTCCEEHHHHHHHHTCC--------HHHHHHH
T ss_pred HHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHH-HHHHHHHccccCCCCccCHHHHHHHhccC--------HHHHHHH
Confidence 88765422 1 111236888999999999997 89999999999999999999999999653 2357889
Q ss_pred HHHHHHhcccccCC-CCCCcEEEehhHHHHHHHHhh
Q 045686 452 IESLKLACLLERGE-NSEDSVKMHNLIRDMALELAS 486 (885)
Q Consensus 452 l~~L~~~~ll~~~~-~~~~~~~mHdlv~~~a~~~~~ 486 (885)
+++|+++||++... +...+|+||++||++++....
T Consensus 415 l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 415 LQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp HHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHTG
T ss_pred HHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhhh
Confidence 99999999998643 224579999999999998743
No 5
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=1.8e-25 Score=244.06 Aligned_cols=304 Identities=15% Similarity=0.196 Sum_probs=225.9
Q ss_pred cCCccceEEEecccCcccccccccCCCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCchhhhcccc
Q 045686 509 FDGWHEAVRLSLWGSSIDFLALVEAPSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPEEIGRLKN 588 (885)
Q Consensus 509 ~~~~~~~~~l~l~~~~i~~~~~~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~ 588 (885)
...+++++++++.++.+.. ++.+..+++|++|++++|.+.. ++. +..+++|++|++++| .++.+| .++++++
T Consensus 40 ~~~l~~L~~L~l~~~~i~~--~~~~~~~~~L~~L~l~~n~i~~--~~~--~~~l~~L~~L~L~~n-~i~~~~-~~~~l~~ 111 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVAS--IQGIEYLTNLEYLNLNGNQITD--ISP--LSNLVKLTNLYIGTN-KITDIS-ALQNLTN 111 (347)
T ss_dssp HHHHTTCSEEECCSSCCCC--CTTGGGCTTCCEEECCSSCCCC--CGG--GTTCTTCCEEECCSS-CCCCCG-GGTTCTT
T ss_pred chhcccccEEEEeCCcccc--chhhhhcCCccEEEccCCcccc--chh--hhcCCcCCEEEccCC-cccCch-HHcCCCc
Confidence 3445678888998888877 6667778899999999988877 766 788899999999998 777776 4888999
Q ss_pred cceeeccCCcccccChhhhccccccEeecCCcccccccCCcccccCcccceecccccccccccCcccccccchhhhcCcc
Q 045686 589 LHHLNLSNTSIGCLPTAIKRLIKLKVLLLDGIQCHLSIPEGVISSLSSLQVFSCFSTELVELIDPLFNETAILDELNCLE 668 (885)
Q Consensus 589 L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~ 668 (885)
|++|++++|.+..+|. +..+++|++|++++|.....++. +..+++|++|++++|.+.+ +..+..++
T Consensus 112 L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~-----------~~~~~~l~ 177 (347)
T 4fmz_A 112 LRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKD-----------VTPIANLT 177 (347)
T ss_dssp CSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCC-----------CGGGGGCT
T ss_pred CCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCC-----------chhhccCC
Confidence 9999999998888876 88889999999999875665554 7888999999998887653 12266777
Q ss_pred CCcceeEEEechhhHHhhhCCCcccccceeEEeccccccccchhhhhhccceEEeeccCccceeecCCCCCccccccccE
Q 045686 669 HLNDLSLTLFSTEAVDKLLNSPKLQRCIRRLTIESSELLSLELGLMLSHLEILRIKCGFMKRLNIDQGLNNRPSFSALRR 748 (885)
Q Consensus 669 ~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~l~~L~~ 748 (885)
+|+.|+++.+....+..+.. .++|+.|.+++|.+........+++|+.|+++.+.++.++. . ..+++|+.
T Consensus 178 ~L~~L~l~~n~l~~~~~~~~----l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~-~-----~~l~~L~~ 247 (347)
T 4fmz_A 178 DLYSLSLNYNQIEDISPLAS----LTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP-L-----ANLSQLTW 247 (347)
T ss_dssp TCSEEECTTSCCCCCGGGGG----CTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-G-----TTCTTCCE
T ss_pred CCCEEEccCCcccccccccC----CCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc-h-----hcCCCCCE
Confidence 78888777655444433322 23788888888875554422233888999988787776654 2 23788999
Q ss_pred EeeccccCCccccccccCCCccEEeEeccCCchhhhcccccCCCcccccccccceeccccccccccccCCccCCCCccEE
Q 045686 749 LSIILCPDIQNLTCLVHVPSLQFLSLSNCHSLEEIVGTYASGSSESRNYFSNLMAVDLDGLPTLRSICSGTVAFPSLQTL 828 (885)
Q Consensus 749 L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~p~L~~L 828 (885)
|++++| .++.++.+..+++|++|++++|. +..+ ..+..+++|+.|++++|......+..+..+++|+.|
T Consensus 248 L~l~~n-~l~~~~~~~~l~~L~~L~l~~n~-l~~~---------~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 316 (347)
T 4fmz_A 248 LEIGTN-QISDINAVKDLTKLKMLNVGSNQ-ISDI---------SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTL 316 (347)
T ss_dssp EECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCC---------GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEE
T ss_pred EECCCC-ccCCChhHhcCCCcCEEEccCCc-cCCC---------hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEE
Confidence 999888 67777888888899999998883 4443 246678889999998876544444556678889999
Q ss_pred eeccCCCCCCcCCCCccccCCceEEEccHh
Q 045686 829 SITGCPSLKKLPFNSESARRSLISVRASAE 858 (885)
Q Consensus 829 ~i~~C~~L~~lp~~~~~~~~~l~~i~~~~~ 858 (885)
++++|+ ++.+|. .....+|+.++...+
T Consensus 317 ~L~~n~-l~~~~~--~~~l~~L~~L~l~~N 343 (347)
T 4fmz_A 317 FLSQNH-ITDIRP--LASLSKMDSADFANQ 343 (347)
T ss_dssp ECCSSS-CCCCGG--GGGCTTCSEESSSCC
T ss_pred EccCCc-cccccC--hhhhhccceeehhhh
Confidence 998875 665554 345677777766543
No 6
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.91 E-value=4.5e-24 Score=242.34 Aligned_cols=335 Identities=17% Similarity=0.155 Sum_probs=238.9
Q ss_pred cCcCCccceEEEecccCcccccccccCCCCchhHHHHHhhcCCc-cCCCCchhhhcCCcccEEecCCCCCCCcC-chhhh
Q 045686 507 NSFDGWHEAVRLSLWGSSIDFLALVEAPSCPQVRTLLARLTMLH-TLPIPSRFFDSMDALEVLDLSYNLDLNQL-PEEIG 584 (885)
Q Consensus 507 ~~~~~~~~~~~l~l~~~~i~~~~~~~~~~~~~Lr~L~l~~~~l~-~~~~~~~~~~~l~~L~~L~Ls~~~~i~~l-p~~i~ 584 (885)
|. -.+++++|++++|.+.......+..+++|++|++++|.+. . ++...|.++++|++|+|++| .+..+ |..++
T Consensus 26 p~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~--i~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~ 100 (455)
T 3v47_A 26 PE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLV--IRNNTFRGLSSLIILKLDYN-QFLQLETGAFN 100 (455)
T ss_dssp CC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCE--ECTTTTTTCTTCCEEECTTC-TTCEECTTTTT
T ss_pred CC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccce--ECcccccccccCCEEeCCCC-ccCccChhhcc
Confidence 55 2368999999999998855566889999999999999775 4 66666999999999999999 66654 88899
Q ss_pred cccccceeeccCCcccc-cChh--hhccccccEeecCCccccccc-CCcccccCcccceecccccccccccCccccccc-
Q 045686 585 RLKNLHHLNLSNTSIGC-LPTA--IKRLIKLKVLLLDGIQCHLSI-PEGVISSLSSLQVFSCFSTELVELIDPLFNETA- 659 (885)
Q Consensus 585 ~L~~L~~L~Ls~~~i~~-lp~~--i~~L~~L~~L~l~~~~~l~~l-p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~- 659 (885)
++++|++|++++|.+.. +|.. +.++++|++|++++|. +..+ |...+.++++|++|++++|.+.+..+..+....
T Consensus 101 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 179 (455)
T 3v47_A 101 GLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQG 179 (455)
T ss_dssp TCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTT
T ss_pred CcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCCcccccChhhhhcccc
Confidence 99999999999999975 4554 8899999999999998 5554 655578999999999999988764332211100
Q ss_pred -c----------h-------------hhhcCccCCcceeEEEechh--hHHhhhCCCcccccceeEEecccccccc----
Q 045686 660 -I----------L-------------DELNCLEHLNDLSLTLFSTE--AVDKLLNSPKLQRCIRRLTIESSELLSL---- 709 (885)
Q Consensus 660 -~----------l-------------~~l~~L~~L~~L~l~~~~~~--~~~~l~~~~~~~~~L~~L~l~~~~~~~~---- 709 (885)
. + ..+..+++|+.|+++.+... ....+.... ...+++.|.+++|.....
T Consensus 180 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~ 258 (455)
T 3v47_A 180 KHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAI-AGTKIQSLILSNSYNMGSSFGH 258 (455)
T ss_dssp CEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHT-TTCCEEEEECTTCTTTSCCTTC
T ss_pred ccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccc-cccceeeEeeccccccccccch
Confidence 0 0 00112234555555433221 111111110 012566666665531100
Q ss_pred ---------chhhh-hhccceEEeeccCccceeecCCCCCccccccccEEeeccccCCcccc--ccccCCCccEEeEecc
Q 045686 710 ---------ELGLM-LSHLEILRIKCGFMKRLNIDQGLNNRPSFSALRRLSIILCPDIQNLT--CLVHVPSLQFLSLSNC 777 (885)
Q Consensus 710 ---------~l~~~-~~~L~~L~l~~~~l~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~~ 777 (885)
.+... .++|+.|+++.+.+..+....+. .+++|+.|++++| .++.++ .++.+++|++|+|++|
T Consensus 259 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~----~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N 333 (455)
T 3v47_A 259 TNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFS----HFTDLEQLTLAQN-EINKIDDNAFWGLTHLLKLNLSQN 333 (455)
T ss_dssp CSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTT----TCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS
T ss_pred hhhccCcccccccccccCceEEEecCccccccchhhcc----cCCCCCEEECCCC-cccccChhHhcCcccCCEEECCCC
Confidence 01111 15789999988888776554433 4899999999999 566653 6788999999999998
Q ss_pred CCchhhhcccccCCCcccccccccceeccccccccccccCCccCCCCccEEeeccCCCCCCcCCCCccccCCceEEEccH
Q 045686 778 HSLEEIVGTYASGSSESRNYFSNLMAVDLDGLPTLRSICSGTVAFPSLQTLSITGCPSLKKLPFNSESARRSLISVRASA 857 (885)
Q Consensus 778 ~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~i~~~~ 857 (885)
. +..++. ..+..+++|++|++++|......+..+..+++|++|++++| +++.+|........+|+.++...
T Consensus 334 ~-l~~~~~-------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~ 404 (455)
T 3v47_A 334 F-LGSIDS-------RMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHT 404 (455)
T ss_dssp C-CCEECG-------GGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCS
T ss_pred c-cCCcCh-------hHhcCcccCCEEECCCCcccccChhhccccccccEEECCCC-ccccCCHhHhccCCcccEEEccC
Confidence 4 444432 36678999999999997654444667888999999999995 79999988777788999999877
Q ss_pred hhhhh
Q 045686 858 EWWNQ 862 (885)
Q Consensus 858 ~~~~~ 862 (885)
+.|.+
T Consensus 405 N~l~~ 409 (455)
T 3v47_A 405 NPWDC 409 (455)
T ss_dssp SCBCC
T ss_pred CCccc
Confidence 66554
No 7
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=5.7e-24 Score=232.20 Aligned_cols=285 Identities=15% Similarity=0.183 Sum_probs=230.1
Q ss_pred cCcCCccceEEEecccCcccccccccCCCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCchhhhcc
Q 045686 507 NSFDGWHEAVRLSLWGSSIDFLALVEAPSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPEEIGRL 586 (885)
Q Consensus 507 ~~~~~~~~~~~l~l~~~~i~~~~~~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L 586 (885)
+.+..++++++|++++|.+.. ++.+..+++|++|++++|.+.. ++. +..+++|++|++++| .+..+|. +..+
T Consensus 60 ~~~~~~~~L~~L~l~~n~i~~--~~~~~~l~~L~~L~L~~n~i~~--~~~--~~~l~~L~~L~l~~n-~i~~~~~-~~~l 131 (347)
T 4fmz_A 60 QGIEYLTNLEYLNLNGNQITD--ISPLSNLVKLTNLYIGTNKITD--ISA--LQNLTNLRELYLNED-NISDISP-LANL 131 (347)
T ss_dssp TTGGGCTTCCEEECCSSCCCC--CGGGTTCTTCCEEECCSSCCCC--CGG--GTTCTTCSEEECTTS-CCCCCGG-GTTC
T ss_pred hhhhhcCCccEEEccCCcccc--chhhhcCCcCCEEEccCCcccC--chH--HcCCCcCCEEECcCC-cccCchh-hccC
Confidence 666778899999999999988 5558899999999999999887 754 899999999999999 8888887 8999
Q ss_pred cccceeeccCCcccccChhhhccccccEeecCCcccccccCCcccccCcccceecccccccccccCcccccccchhhhcC
Q 045686 587 KNLHHLNLSNTSIGCLPTAIKRLIKLKVLLLDGIQCHLSIPEGVISSLSSLQVFSCFSTELVELIDPLFNETAILDELNC 666 (885)
Q Consensus 587 ~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~ 666 (885)
++|++|++++|.....+..+..+++|++|++++|. +..++. +..+++|++|++++|.+.+ +..+..
T Consensus 132 ~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~--~~~l~~L~~L~l~~n~l~~-----------~~~~~~ 197 (347)
T 4fmz_A 132 TKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK-VKDVTP--IANLTDLYSLSLNYNQIED-----------ISPLAS 197 (347)
T ss_dssp TTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEECTTSCCCC-----------CGGGGG
T ss_pred CceeEEECCCCCCcccccchhhCCCCcEEEecCCC-cCCchh--hccCCCCCEEEccCCcccc-----------cccccC
Confidence 99999999999554444469999999999999997 666665 8899999999999998763 223677
Q ss_pred ccCCcceeEEEechhhHHhhhCCCcccccceeEEeccccccccchhhhhhccceEEeeccCccceeecCCCCCccccccc
Q 045686 667 LEHLNDLSLTLFSTEAVDKLLNSPKLQRCIRRLTIESSELLSLELGLMLSHLEILRIKCGFMKRLNIDQGLNNRPSFSAL 746 (885)
Q Consensus 667 L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~l~~L 746 (885)
+++|+.+++..+.......+. ..++|+.|++++|.+........+++|+.|+++.+.++.++. ...+++|
T Consensus 198 l~~L~~L~l~~n~l~~~~~~~----~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~------~~~l~~L 267 (347)
T 4fmz_A 198 LTSLHYFTAYVNQITDITPVA----NMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINA------VKDLTKL 267 (347)
T ss_dssp CTTCCEEECCSSCCCCCGGGG----GCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG------GTTCTTC
T ss_pred CCccceeecccCCCCCCchhh----cCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCChh------HhcCCCc
Confidence 888888888766554443332 234899999999996655533334999999998888887631 2248999
Q ss_pred cEEeeccccCCccccccccCCCccEEeEeccCCchhhhcccccCCCcccccccccceeccccccccccccCCccCCCCcc
Q 045686 747 RRLSIILCPDIQNLTCLVHVPSLQFLSLSNCHSLEEIVGTYASGSSESRNYFSNLMAVDLDGLPTLRSICSGTVAFPSLQ 826 (885)
Q Consensus 747 ~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~p~L~ 826 (885)
+.|++++| .++.++.+..+++|+.|++++|.. ..... ..+..+++|++|++++|+ +..++. ...+++|+
T Consensus 268 ~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~n~l-~~~~~-------~~l~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~ 336 (347)
T 4fmz_A 268 KMLNVGSN-QISDISVLNNLSQLNSLFLNNNQL-GNEDM-------EVIGGLTNLTTLFLSQNH-ITDIRP-LASLSKMD 336 (347)
T ss_dssp CEEECCSS-CCCCCGGGGGCTTCSEEECCSSCC-CGGGH-------HHHHTCTTCSEEECCSSS-CCCCGG-GGGCTTCS
T ss_pred CEEEccCC-ccCCChhhcCCCCCCEEECcCCcC-CCcCh-------hHhhccccCCEEEccCCc-cccccC-hhhhhccc
Confidence 99999999 788888899999999999999954 33322 356789999999999987 444443 67899999
Q ss_pred EEeeccCC
Q 045686 827 TLSITGCP 834 (885)
Q Consensus 827 ~L~i~~C~ 834 (885)
.|++++|+
T Consensus 337 ~L~l~~N~ 344 (347)
T 4fmz_A 337 SADFANQV 344 (347)
T ss_dssp EESSSCC-
T ss_pred eeehhhhc
Confidence 99999974
No 8
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.91 E-value=1e-24 Score=242.15 Aligned_cols=307 Identities=17% Similarity=0.205 Sum_probs=239.6
Q ss_pred CccceEEEecccCcccccccccCCCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcC-chhhhccccc
Q 045686 511 GWHEAVRLSLWGSSIDFLALVEAPSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQL-PEEIGRLKNL 589 (885)
Q Consensus 511 ~~~~~~~l~l~~~~i~~~~~~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~l-p~~i~~L~~L 589 (885)
.+.+++++++.++.+...+...+..+++|++|++++|.+.. ++...|..+++|++|+|++| .++.+ |..++++++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L 119 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEE--IDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLL 119 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCE--ECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccc--cChhhccCCCCcCEEECCCC-CCCcCCHHHhcCCCCC
Confidence 35689999999998887332235678999999999999988 87767999999999999999 67766 4568999999
Q ss_pred ceeeccCCcccccChh-hhccccccEeecCCcccccccCCcccccCcccceecccccccccccCcccccccchhhhcCcc
Q 045686 590 HHLNLSNTSIGCLPTA-IKRLIKLKVLLLDGIQCHLSIPEGVISSLSSLQVFSCFSTELVELIDPLFNETAILDELNCLE 668 (885)
Q Consensus 590 ~~L~Ls~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~ 668 (885)
++|++++|.+..+|.. +.++++|++|++++|. +..++...+.++++|++|++++|.+.+. .+..++
T Consensus 120 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~------------~~~~l~ 186 (390)
T 3o6n_A 120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTHV------------DLSLIP 186 (390)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSCCSBC------------CGGGCT
T ss_pred CEEECCCCccCcCCHHHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCCcCCcc------------cccccc
Confidence 9999999999999987 5899999999999997 6677666689999999999999987641 244566
Q ss_pred CCcceeEEEechhhHHhhhCCCcccccceeEEeccccccccchhhhhhccceEEeeccCccceeecCCCCCccccccccE
Q 045686 669 HLNDLSLTLFSTEAVDKLLNSPKLQRCIRRLTIESSELLSLELGLMLSHLEILRIKCGFMKRLNIDQGLNNRPSFSALRR 748 (885)
Q Consensus 669 ~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~l~~L~~ 748 (885)
+|+.|++..+....+ .....|+.|++++|.+..++.... ++|+.|+++.+.++..+ ....+++|+.
T Consensus 187 ~L~~L~l~~n~l~~~-------~~~~~L~~L~l~~n~l~~~~~~~~-~~L~~L~l~~n~l~~~~------~l~~l~~L~~ 252 (390)
T 3o6n_A 187 SLFHANVSYNLLSTL-------AIPIAVEELDASHNSINVVRGPVN-VELTILKLQHNNLTDTA------WLLNYPGLVE 252 (390)
T ss_dssp TCSEEECCSSCCSEE-------ECCSSCSEEECCSSCCCEEECCCC-SSCCEEECCSSCCCCCG------GGGGCTTCSE
T ss_pred ccceeeccccccccc-------CCCCcceEEECCCCeeeecccccc-ccccEEECCCCCCcccH------HHcCCCCccE
Confidence 777777765433221 122478999999988665543333 78999999888887652 1234899999
Q ss_pred EeeccccCCccc--cccccCCCccEEeEeccCCchhhhcccccCCCcccccccccceeccccccccccccCCccCCCCcc
Q 045686 749 LSIILCPDIQNL--TCLVHVPSLQFLSLSNCHSLEEIVGTYASGSSESRNYFSNLMAVDLDGLPTLRSICSGTVAFPSLQ 826 (885)
Q Consensus 749 L~L~~c~~l~~l--~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~p~L~ 826 (885)
|++++| .++.+ ..+..+++|+.|++++|. ++.++ .....+|+|++|++++| .+..++..+..+++|+
T Consensus 253 L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~--------~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~ 321 (390)
T 3o6n_A 253 VDLSYN-ELEKIMYHPFVKMQRLERLYISNNR-LVALN--------LYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLE 321 (390)
T ss_dssp EECCSS-CCCEEESGGGTTCSSCCEEECCSSC-CCEEE--------CSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCS
T ss_pred EECCCC-cCCCcChhHccccccCCEEECCCCc-CcccC--------cccCCCCCCCEEECCCC-cceecCccccccCcCC
Confidence 999999 56654 367889999999999984 55443 24467899999999997 5667777777889999
Q ss_pred EEeeccCCCCCCcCCCCccccCCceEEEccHhhhhh
Q 045686 827 TLSITGCPSLKKLPFNSESARRSLISVRASAEWWNQ 862 (885)
Q Consensus 827 ~L~i~~C~~L~~lp~~~~~~~~~l~~i~~~~~~~~~ 862 (885)
.|++++| .++.+|.. ...+|+.+....+.|.+
T Consensus 322 ~L~L~~N-~i~~~~~~---~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 322 NLYLDHN-SIVTLKLS---THHTLKNLTLSHNDWDC 353 (390)
T ss_dssp EEECCSS-CCCCCCCC---TTCCCSEEECCSSCEEH
T ss_pred EEECCCC-ccceeCch---hhccCCEEEcCCCCccc
Confidence 9999996 58888753 45788888887766554
No 9
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.91 E-value=5.3e-24 Score=254.80 Aligned_cols=328 Identities=13% Similarity=0.125 Sum_probs=235.7
Q ss_pred CcCCccceEEEecccCccccc-----------------ccccCC--CCchhHHHHHhhcCCccCCCCchhhhcCCcccEE
Q 045686 508 SFDGWHEAVRLSLWGSSIDFL-----------------ALVEAP--SCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVL 568 (885)
Q Consensus 508 ~~~~~~~~~~l~l~~~~i~~~-----------------~~~~~~--~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L 568 (885)
.+..+++++.|++++|.+... ....+. .+++|++|++++|.+.. .+|.. |.++++|++|
T Consensus 443 ~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~-~iP~~-l~~L~~L~~L 520 (876)
T 4ecn_A 443 AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMT-QLPDF-LYDLPELQSL 520 (876)
T ss_dssp GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCC-SCCGG-GGGCSSCCEE
T ss_pred HHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCc-cChHH-HhCCCCCCEE
Confidence 356677899999999988761 233444 78999999999997544 25644 8899999999
Q ss_pred ecCCCCCCC--cCchhhhccc-------ccceeeccCCcccccCh--hhhccccccEeecCCcccccccCCcccccCccc
Q 045686 569 DLSYNLDLN--QLPEEIGRLK-------NLHHLNLSNTSIGCLPT--AIKRLIKLKVLLLDGIQCHLSIPEGVISSLSSL 637 (885)
Q Consensus 569 ~Ls~~~~i~--~lp~~i~~L~-------~L~~L~Ls~~~i~~lp~--~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L 637 (885)
+|++|..++ .+|..++++. +|++|++++|.+..+|. .++++++|++|++++|. +..+| . ++++++|
T Consensus 521 ~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~-~~~L~~L 597 (876)
T 4ecn_A 521 NIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK-VRHLE-A-FGTNVKL 597 (876)
T ss_dssp ECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSC-CCBCC-C-CCTTSEE
T ss_pred ECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCC-cccch-h-hcCCCcc
Confidence 999994265 4888888776 99999999999999998 89999999999999997 56888 4 8899999
Q ss_pred ceecccccccccccCcccccccchhhhcCccC-CcceeEEEechhhHHh--------------------------hhCCC
Q 045686 638 QVFSCFSTELVELIDPLFNETAILDELNCLEH-LNDLSLTLFSTEAVDK--------------------------LLNSP 690 (885)
Q Consensus 638 ~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~-L~~L~l~~~~~~~~~~--------------------------l~~~~ 690 (885)
++|++++|.+. .+|. .+..+++ |+.|+++.+....++. +....
T Consensus 598 ~~L~Ls~N~l~-~lp~---------~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l 667 (876)
T 4ecn_A 598 TDLKLDYNQIE-EIPE---------DFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSM 667 (876)
T ss_dssp SEEECCSSCCS-CCCT---------TSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCT
T ss_pred eEEECcCCccc-cchH---------HHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhh
Confidence 99999998876 3332 2333333 4444443332221111 11000
Q ss_pred c--ccccceeEEeccccccccc--hhhhhhccceEEeeccCccceeecCCCCC---ccccccccEEeeccccCCcccc-c
Q 045686 691 K--LQRCIRRLTIESSELLSLE--LGLMLSHLEILRIKCGFMKRLNIDQGLNN---RPSFSALRRLSIILCPDIQNLT-C 762 (885)
Q Consensus 691 ~--~~~~L~~L~l~~~~~~~~~--l~~~~~~L~~L~l~~~~l~~l~~~~~~~~---~~~l~~L~~L~L~~c~~l~~l~-~ 762 (885)
. ...+|+.|++++|.+..++ +...+++|+.|+++.|.+..++...+... ...+++|+.|+|++| .++.+| .
T Consensus 668 ~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~~ 746 (876)
T 4ecn_A 668 DDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDD 746 (876)
T ss_dssp TTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCCGG
T ss_pred ccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCC-CCccchHH
Confidence 0 1126778888887755554 22224789999998888887776554321 123459999999999 677775 4
Q ss_pred cc--cCCCccEEeEeccCCchhhhcccccCCCcccccccccceecccc------ccccccccCCccCCCCccEEeeccCC
Q 045686 763 LV--HVPSLQFLSLSNCHSLEEIVGTYASGSSESRNYFSNLMAVDLDG------LPTLRSICSGTVAFPSLQTLSITGCP 834 (885)
Q Consensus 763 l~--~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~------~~~l~~~~~~~~~~p~L~~L~i~~C~ 834 (885)
+. .+++|+.|+|++|. +..++ ..+..+++|+.|+|++ |.....++..+..+++|+.|++++|
T Consensus 747 l~~~~l~~L~~L~Ls~N~-L~~lp--------~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N- 816 (876)
T 4ecn_A 747 FRATTLPYLSNMDVSYNC-FSSFP--------TQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN- 816 (876)
T ss_dssp GSTTTCTTCCEEECCSSC-CSSCC--------CGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-
T ss_pred hhhccCCCcCEEEeCCCC-CCccc--------hhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCC-
Confidence 54 89999999999985 44443 3677899999999987 4445567778889999999999997
Q ss_pred CCCCcCCCCccccCCceEEEccHhhhhhcc
Q 045686 835 SLKKLPFNSESARRSLISVRASAEWWNQLE 864 (885)
Q Consensus 835 ~L~~lp~~~~~~~~~l~~i~~~~~~~~~l~ 864 (885)
.++.+|.... .+|+.++...+.|..+.
T Consensus 817 ~L~~Ip~~l~---~~L~~LdLs~N~l~~i~ 843 (876)
T 4ecn_A 817 DIRKVDEKLT---PQLYILDIADNPNISID 843 (876)
T ss_dssp CCCBCCSCCC---SSSCEEECCSCTTCEEE
T ss_pred CCCccCHhhc---CCCCEEECCCCCCCccC
Confidence 5599998753 58899998877665443
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.90 E-value=7.1e-24 Score=249.81 Aligned_cols=339 Identities=12% Similarity=0.136 Sum_probs=217.9
Q ss_pred cCCccceEEEecccCccccc-----------------ccccCC--CCchhHHHHHhhcCCccCCCCchhhhcCCcccEEe
Q 045686 509 FDGWHEAVRLSLWGSSIDFL-----------------ALVEAP--SCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLD 569 (885)
Q Consensus 509 ~~~~~~~~~l~l~~~~i~~~-----------------~~~~~~--~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~ 569 (885)
+..+++++.|++++|.+... ....+. ++++|++|++++|.+.. .+|.. |.++++|++|+
T Consensus 202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~-~~p~~-l~~l~~L~~L~ 279 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLT-KLPTF-LKALPEMQLIN 279 (636)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCS-SCCTT-TTTCSSCCEEE
T ss_pred HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCc-cChHH-HhcCCCCCEEE
Confidence 44556777777777776652 233445 67777777777776543 24433 67777777777
Q ss_pred cCCCCCCC--cCchhhhcc------cccceeeccCCcccccCh--hhhccccccEeecCCcccccccCCcccccCcccce
Q 045686 570 LSYNLDLN--QLPEEIGRL------KNLHHLNLSNTSIGCLPT--AIKRLIKLKVLLLDGIQCHLSIPEGVISSLSSLQV 639 (885)
Q Consensus 570 Ls~~~~i~--~lp~~i~~L------~~L~~L~Ls~~~i~~lp~--~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~ 639 (885)
|++|..++ .+|..++++ ++|++|++++|++..+|. .++++++|++|++++|.....+| . ++++++|++
T Consensus 280 Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~-~~~l~~L~~ 357 (636)
T 4eco_A 280 VACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-A-FGSEIKLAS 357 (636)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-C-CEEEEEESE
T ss_pred CcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-h-hCCCCCCCE
Confidence 77773154 467777665 777777777777777776 67777777777777776333666 3 677777777
Q ss_pred ecccccccccccCccccccc---------------chhhhcC--ccCCcceeEEEechhhH--Hhhh---CCCcccccce
Q 045686 640 FSCFSTELVELIDPLFNETA---------------ILDELNC--LEHLNDLSLTLFSTEAV--DKLL---NSPKLQRCIR 697 (885)
Q Consensus 640 L~l~~~~~~~~~~~~~~~~~---------------~l~~l~~--L~~L~~L~l~~~~~~~~--~~l~---~~~~~~~~L~ 697 (885)
|++++|.+. .+|..+.... ....+.. +++|+.|+++.+..... ..+. .......+|+
T Consensus 358 L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~ 436 (636)
T 4eco_A 358 LNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVS 436 (636)
T ss_dssp EECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEE
T ss_pred EECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCC
Confidence 777777665 2222111000 0011111 22455555544332211 0011 0000123688
Q ss_pred eEEeccccccccc--hhhhhhccceEEeeccCccceeecCCCCC---ccccccccEEeeccccCCcccc-ccc--cCCCc
Q 045686 698 RLTIESSELLSLE--LGLMLSHLEILRIKCGFMKRLNIDQGLNN---RPSFSALRRLSIILCPDIQNLT-CLV--HVPSL 769 (885)
Q Consensus 698 ~L~l~~~~~~~~~--l~~~~~~L~~L~l~~~~l~~l~~~~~~~~---~~~l~~L~~L~L~~c~~l~~l~-~l~--~l~~L 769 (885)
.|++++|.+..++ +...+++|+.|+++.|.++.++...+... ...+++|+.|+|++| .++.+| .+. .+++|
T Consensus 437 ~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~l~~L 515 (636)
T 4eco_A 437 SINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFN-KLTKLSDDFRATTLPYL 515 (636)
T ss_dssp EEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSS-CCCBCCGGGSTTTCTTC
T ss_pred EEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCC-cCCccChhhhhccCCCc
Confidence 8888888865554 22224889999998888887766554311 112349999999999 677775 454 89999
Q ss_pred cEEeEeccCCchhhhcccccCCCcccccccccceecccc------ccccccccCCccCCCCccEEeeccCCCCCCcCCCC
Q 045686 770 QFLSLSNCHSLEEIVGTYASGSSESRNYFSNLMAVDLDG------LPTLRSICSGTVAFPSLQTLSITGCPSLKKLPFNS 843 (885)
Q Consensus 770 ~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~------~~~l~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~~ 843 (885)
+.|+|++|. +..++ ..+..+++|++|+|++ +.....++..+..+++|+.|++++| .++.+|...
T Consensus 516 ~~L~Ls~N~-l~~ip--------~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~ip~~~ 585 (636)
T 4eco_A 516 VGIDLSYNS-FSKFP--------TQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN-DIRKVNEKI 585 (636)
T ss_dssp CEEECCSSC-CSSCC--------CGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-CCCBCCSCC
T ss_pred CEEECCCCC-CCCcC--------hhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCC-cCCccCHhH
Confidence 999999985 44443 3667899999999954 4456677888889999999999997 569999875
Q ss_pred ccccCCceEEEccHhhhhhcccC
Q 045686 844 ESARRSLISVRASAEWWNQLEWE 866 (885)
Q Consensus 844 ~~~~~~l~~i~~~~~~~~~l~w~ 866 (885)
. .+|+.++...+.|.++...
T Consensus 586 ~---~~L~~L~Ls~N~l~~~~~~ 605 (636)
T 4eco_A 586 T---PNISVLDIKDNPNISIDLS 605 (636)
T ss_dssp C---TTCCEEECCSCTTCEEECT
T ss_pred h---CcCCEEECcCCCCccccHH
Confidence 3 6899999988877665543
No 11
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.90 E-value=1.7e-23 Score=237.91 Aligned_cols=318 Identities=14% Similarity=0.225 Sum_probs=190.6
Q ss_pred cCcCCccceEEEecccCcccccccccCCCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCchhhhcc
Q 045686 507 NSFDGWHEAVRLSLWGSSIDFLALVEAPSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPEEIGRL 586 (885)
Q Consensus 507 ~~~~~~~~~~~l~l~~~~i~~~~~~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L 586 (885)
|.+..+++++.|++++|.+.. ++.+..+++|++|++++|.+.. ++. +..+++|++|++++| .++.+|. ++++
T Consensus 62 ~~~~~l~~L~~L~Ls~n~l~~--~~~~~~l~~L~~L~l~~n~l~~--~~~--~~~l~~L~~L~L~~n-~l~~~~~-~~~l 133 (466)
T 1o6v_A 62 DGVEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITP--LANLTNLTGLTLFNN-QITDIDP-LKNL 133 (466)
T ss_dssp TTGGGCTTCCEEECCSSCCCC--CGGGTTCTTCCEEECCSSCCCC--CGG--GTTCTTCCEEECCSS-CCCCCGG-GTTC
T ss_pred cchhhhcCCCEEECCCCccCC--chhhhccccCCEEECCCCcccc--Chh--hcCCCCCCEEECCCC-CCCCChH-HcCC
Confidence 556667788888888888877 4447788888888888888776 665 788888888888888 7777775 7888
Q ss_pred cccceeeccCCcccccChhhhccccccEeecCCcccccccCCcccccCcccceecccccccccccCcc-----------c
Q 045686 587 KNLHHLNLSNTSIGCLPTAIKRLIKLKVLLLDGIQCHLSIPEGVISSLSSLQVFSCFSTELVELIDPL-----------F 655 (885)
Q Consensus 587 ~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~-----------~ 655 (885)
++|++|++++|.+..+| .++.+++|++|+++++ +..++. ++++++|++|++++|.+.+..... .
T Consensus 134 ~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~~--~~~~~~--~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~ 208 (466)
T 1o6v_A 134 TNLNRLELSSNTISDIS-ALSGLTSLQQLSFGNQ--VTDLKP--LANLTTLERLDISSNKVSDISVLAKLTNLESLIATN 208 (466)
T ss_dssp TTCSEEEEEEEEECCCG-GGTTCTTCSEEEEEES--CCCCGG--GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCS
T ss_pred CCCCEEECCCCccCCCh-hhccCCcccEeecCCc--ccCchh--hccCCCCCEEECcCCcCCCChhhccCCCCCEEEecC
Confidence 88888888888877766 3555555555555422 223332 455555666666555543210000 0
Q ss_pred ccccchhhhcCccCCcceeEEEechhhHHhhhCCCcccccceeEEeccccccccchhhhhhccceEEeeccCccceeecC
Q 045686 656 NETAILDELNCLEHLNDLSLTLFSTEAVDKLLNSPKLQRCIRRLTIESSELLSLELGLMLSHLEILRIKCGFMKRLNIDQ 735 (885)
Q Consensus 656 ~~~~~l~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~L~~L~l~~~~l~~l~~~~ 735 (885)
.....+..+..+++|+.|+++.+....++.+.. .++|+.|++++|.+........+++|+.|++++|.+..++. .
T Consensus 209 n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~----l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~ 283 (466)
T 1o6v_A 209 NQISDITPLGILTNLDELSLNGNQLKDIGTLAS----LTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP-L 283 (466)
T ss_dssp SCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGG----CTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGG-G
T ss_pred CcccccccccccCCCCEEECCCCCcccchhhhc----CCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCcccc-c
Confidence 000001113334455555554443332222221 22566666666653333212222666666666565555433 1
Q ss_pred CCCCccccccccEEeeccccCCccccccccCCCccEEeEeccCCchhhhcccccCCCcccccccccceeccccccccccc
Q 045686 736 GLNNRPSFSALRRLSIILCPDIQNLTCLVHVPSLQFLSLSNCHSLEEIVGTYASGSSESRNYFSNLMAVDLDGLPTLRSI 815 (885)
Q Consensus 736 ~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 815 (885)
..+++|+.|++++| .++.++.++.+++|+.|++++|. +..+ ..+..+++|+.|++++| .+..+
T Consensus 284 -----~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~L~~n~-l~~~---------~~~~~l~~L~~L~l~~n-~l~~~ 346 (466)
T 1o6v_A 284 -----AGLTALTNLELNEN-QLEDISPISNLKNLTYLTLYFNN-ISDI---------SPVSSLTKLQRLFFYNN-KVSDV 346 (466)
T ss_dssp -----TTCTTCSEEECCSS-CCSCCGGGGGCTTCSEEECCSSC-CSCC---------GGGGGCTTCCEEECCSS-CCCCC
T ss_pred -----cCCCccCeEEcCCC-cccCchhhcCCCCCCEEECcCCc-CCCc---------hhhccCccCCEeECCCC-ccCCc
Confidence 23677777777777 56666667777777777777774 3322 12557788888888876 34444
Q ss_pred cCCccCCCCccEEeeccCCCCCCcCCCCccccCCceEEEccHhhhhhc
Q 045686 816 CSGTVAFPSLQTLSITGCPSLKKLPFNSESARRSLISVRASAEWWNQL 863 (885)
Q Consensus 816 ~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~i~~~~~~~~~l 863 (885)
..+..+++|+.|++++|+--...| .....+|+.+....+-|.++
T Consensus 347 -~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 347 -SSLANLTNINWLSAGHNQISDLTP---LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp -GGGTTCTTCCEEECCSSCCCBCGG---GTTCTTCCEEECCCEEEECC
T ss_pred -hhhccCCCCCEEeCCCCccCccch---hhcCCCCCEEeccCCcccCC
Confidence 245667888888888874333333 34567777777766666553
No 12
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.90 E-value=1.6e-23 Score=239.26 Aligned_cols=292 Identities=22% Similarity=0.199 Sum_probs=171.4
Q ss_pred cceEEEecccCcccccccccCCCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCchh-hhcccccce
Q 045686 513 HEAVRLSLWGSSIDFLALVEAPSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPEE-IGRLKNLHH 591 (885)
Q Consensus 513 ~~~~~l~l~~~~i~~~~~~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~-i~~L~~L~~ 591 (885)
++++.|++++|.+.......+..+++|++|++++|.+.. +++..|.++++|++|+|++| .++.+|.. ++++++|++
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~ 108 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSA--VEPGAFNNLFNLRTLGLRSN-RLKLIPLGVFTGLSNLTK 108 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCE--ECTTTTTTCTTCCEEECCSS-CCCSCCTTSSTTCTTCCE
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCE--eChhhhhCCccCCEEECCCC-cCCccCcccccCCCCCCE
Confidence 467788888888777444566777888888888887776 65555778888888888887 67776654 577888888
Q ss_pred eeccCCccccc-ChhhhccccccEeecCCcccccccCCcccccCcccceecccccccccccCcccccccchhhhcCccCC
Q 045686 592 LNLSNTSIGCL-PTAIKRLIKLKVLLLDGIQCHLSIPEGVISSLSSLQVFSCFSTELVELIDPLFNETAILDELNCLEHL 670 (885)
Q Consensus 592 L~Ls~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L 670 (885)
|+|++|.+..+ |..+.++++|++|++++|. +..++...+.++++|++|++++|.+.+. ....+..+++|
T Consensus 109 L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~---------~~~~l~~l~~L 178 (477)
T 2id5_A 109 LDISENKIVILLDYMFQDLYNLKSLEVGDND-LVYISHRAFSGLNSLEQLTLEKCNLTSI---------PTEALSHLHGL 178 (477)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEEECCTT-CCEECTTSSTTCTTCCEEEEESCCCSSC---------CHHHHTTCTTC
T ss_pred EECCCCccccCChhHccccccCCEEECCCCc-cceeChhhccCCCCCCEEECCCCcCccc---------ChhHhcccCCC
Confidence 88888877655 4457778888888888876 5555544477788888888887776531 22345566677
Q ss_pred cceeEEEechhhHHhhhCCCcccccceeEEecccc-ccccc--hhhhhhccceEEeeccCccceeecCCCCCcccccccc
Q 045686 671 NDLSLTLFSTEAVDKLLNSPKLQRCIRRLTIESSE-LLSLE--LGLMLSHLEILRIKCGFMKRLNIDQGLNNRPSFSALR 747 (885)
Q Consensus 671 ~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~--l~~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~l~~L~ 747 (885)
+.|++..+....+... .....++|+.|++++|. ...+. .... .+|+.|+++.+.++.++...+. .+++|+
T Consensus 179 ~~L~l~~n~i~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~----~l~~L~ 251 (477)
T 2id5_A 179 IVLRLRHLNINAIRDY--SFKRLYRLKVLEISHWPYLDTMTPNCLYG-LNLTSLSITHCNLTAVPYLAVR----HLVYLR 251 (477)
T ss_dssp CEEEEESCCCCEECTT--CSCSCTTCCEEEEECCTTCCEECTTTTTT-CCCSEEEEESSCCCSCCHHHHT----TCTTCC
T ss_pred cEEeCCCCcCcEeChh--hcccCcccceeeCCCCccccccCcccccC-ccccEEECcCCcccccCHHHhc----CccccC
Confidence 7776665433222110 01112356666666554 22211 1111 3566666655555544422211 255666
Q ss_pred EEeeccccCCcccc--ccccCCCccEEeEeccCCchhhhcccccCCCcccccccccceeccccccccccccC-CccCCCC
Q 045686 748 RLSIILCPDIQNLT--CLVHVPSLQFLSLSNCHSLEEIVGTYASGSSESRNYFSNLMAVDLDGLPTLRSICS-GTVAFPS 824 (885)
Q Consensus 748 ~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~p~ 824 (885)
.|+|++| .++.++ .+..+++|+.|+|++|. +..+.. ..+..+++|+.|+|+++ .+..++. .+..+++
T Consensus 252 ~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~-------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~ 321 (477)
T 2id5_A 252 FLNLSYN-PISTIEGSMLHELLRLQEIQLVGGQ-LAVVEP-------YAFRGLNYLRVLNVSGN-QLTTLEESVFHSVGN 321 (477)
T ss_dssp EEECCSS-CCCEECTTSCTTCTTCCEEECCSSC-CSEECT-------TTBTTCTTCCEEECCSS-CCSCCCGGGBSCGGG
T ss_pred eeECCCC-cCCccChhhccccccCCEEECCCCc-cceECH-------HHhcCcccCCEEECCCC-cCceeCHhHcCCCcc
Confidence 6666665 344432 34555666666666653 332211 24455566666666654 3333332 2344556
Q ss_pred ccEEeeccCC
Q 045686 825 LQTLSITGCP 834 (885)
Q Consensus 825 L~~L~i~~C~ 834 (885)
|+.|+++++|
T Consensus 322 L~~L~l~~N~ 331 (477)
T 2id5_A 322 LETLILDSNP 331 (477)
T ss_dssp CCEEECCSSC
T ss_pred cCEEEccCCC
Confidence 6666665543
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.90 E-value=2.9e-23 Score=243.03 Aligned_cols=69 Identities=20% Similarity=0.181 Sum_probs=53.2
Q ss_pred cccccccccceeccccccccccccCCccCCCCccEEeeccCCCCCCcCCCCccccCCceEEEccHhhhhh
Q 045686 793 ESRNYFSNLMAVDLDGLPTLRSICSGTVAFPSLQTLSITGCPSLKKLPFNSESARRSLISVRASAEWWNQ 862 (885)
Q Consensus 793 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~i~~~~~~~~~ 862 (885)
..+..+++|++|++++|......+..+..+++|+.|++++| +++.+|........+|+.++...+.|.|
T Consensus 464 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 532 (570)
T 2z63_A 464 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNPWDC 532 (570)
T ss_dssp SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred hhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCcccC
Confidence 35667888888888887544444667778899999999996 7888887766778889999887766654
No 14
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.90 E-value=1.4e-23 Score=247.54 Aligned_cols=134 Identities=19% Similarity=0.210 Sum_probs=97.5
Q ss_pred cceEEEecccCcccccccccCCCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcC-chhhhcccccce
Q 045686 513 HEAVRLSLWGSSIDFLALVEAPSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQL-PEEIGRLKNLHH 591 (885)
Q Consensus 513 ~~~~~l~l~~~~i~~~~~~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~l-p~~i~~L~~L~~ 591 (885)
+++++|++++|.+.......+.++++|++|++++|.+.. +++..|.++++|++|+|++| .++.+ |..++++++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--i~~~~~~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~ 108 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET--IEDKAWHGLHHLSNLILTGN-PIQSFSPGSFSGLTSLEN 108 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE--ECTTTTTTCTTCCEEECTTC-CCCCCCTTSSTTCTTCCE
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccc--cCHHHhhchhhcCEeECCCC-cccccChhhcCCcccCCE
Confidence 577888888887776444456777888888888887776 66666777888888888887 56555 677778888888
Q ss_pred eeccCCcccccC-hhhhccccccEeecCCccccc-ccCCcccccCcccceecccccccccc
Q 045686 592 LNLSNTSIGCLP-TAIKRLIKLKVLLLDGIQCHL-SIPEGVISSLSSLQVFSCFSTELVEL 650 (885)
Q Consensus 592 L~Ls~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~-~lp~~~i~~L~~L~~L~l~~~~~~~~ 650 (885)
|++++|.+..+| ..++++++|++|++++|.... .+|.. ++++++|++|++++|.+.+.
T Consensus 109 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 109 LVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY-FSNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp EECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGG-GGTCTTCCEEECCSSCCCEE
T ss_pred EEccCCccccccccccCCCCCCCEEeCCCCcccceechHh-HhhcCCCCEEEccCCcceec
Confidence 888888777666 457778888888888776322 35665 77788888888777766553
No 15
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.90 E-value=3.5e-23 Score=235.22 Aligned_cols=302 Identities=18% Similarity=0.202 Sum_probs=197.7
Q ss_pred ccceEEEecccCcccccccccCCCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCchhhhcccccce
Q 045686 512 WHEAVRLSLWGSSIDFLALVEAPSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPEEIGRLKNLHH 591 (885)
Q Consensus 512 ~~~~~~l~l~~~~i~~~~~~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~ 591 (885)
+++++.|++.++.+.. ++.+..+++|++|++++|.+.. +++ +..+++|++|++++| .+..+|. ++++++|++
T Consensus 45 l~~l~~L~l~~~~i~~--l~~~~~l~~L~~L~Ls~n~l~~--~~~--~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~ 116 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQLTD--ITP--LKNLTKLVDILMNNN-QIADITP-LANLTNLTG 116 (466)
T ss_dssp HHTCCEEECCSSCCCC--CTTGGGCTTCCEEECCSSCCCC--CGG--GTTCTTCCEEECCSS-CCCCCGG-GTTCTTCCE
T ss_pred hccccEEecCCCCCcc--CcchhhhcCCCEEECCCCccCC--chh--hhccccCCEEECCCC-ccccChh-hcCCCCCCE
Confidence 4579999999998887 6777889999999999999988 776 899999999999999 8888887 999999999
Q ss_pred eeccCCcccccChhhhccccccEeecCCcccccccCCcccccCcccceecccccccccccCcccccccchhhhcCccCCc
Q 045686 592 LNLSNTSIGCLPTAIKRLIKLKVLLLDGIQCHLSIPEGVISSLSSLQVFSCFSTELVELIDPLFNETAILDELNCLEHLN 671 (885)
Q Consensus 592 L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 671 (885)
|++++|.+..+|. +.++++|++|++++|. +..+|. ++++++|++|++.+ .+.+ +..+..+++|+
T Consensus 117 L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~--~~~l~~L~~L~l~~-~~~~-----------~~~~~~l~~L~ 180 (466)
T 1o6v_A 117 LTLFNNQITDIDP-LKNLTNLNRLELSSNT-ISDISA--LSGLTSLQQLSFGN-QVTD-----------LKPLANLTTLE 180 (466)
T ss_dssp EECCSSCCCCCGG-GTTCTTCSEEEEEEEE-ECCCGG--GTTCTTCSEEEEEE-SCCC-----------CGGGTTCTTCC
T ss_pred EECCCCCCCCChH-HcCCCCCCEEECCCCc-cCCChh--hccCCcccEeecCC-cccC-----------chhhccCCCCC
Confidence 9999999999986 9999999999999997 777774 89999999999963 3322 12255555666
Q ss_pred ceeEEEechhhHHhhhCCCcccccceeEEeccccccccchhhhhhccceEEeeccCccceeecCCC--------------
Q 045686 672 DLSLTLFSTEAVDKLLNSPKLQRCIRRLTIESSELLSLELGLMLSHLEILRIKCGFMKRLNIDQGL-------------- 737 (885)
Q Consensus 672 ~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~L~~L~l~~~~l~~l~~~~~~-------------- 737 (885)
.|+++.+....+..+.. .++|+.|++++|.+........+++|+.|+++.+.++.++. ...
T Consensus 181 ~L~l~~n~l~~~~~l~~----l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l 255 (466)
T 1o6v_A 181 RLDISSNKVSDISVLAK----LTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT-LASLTNLTDLDLANNQI 255 (466)
T ss_dssp EEECCSSCCCCCGGGGG----CTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECCSSCC
T ss_pred EEECcCCcCCCChhhcc----CCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchh-hhcCCCCCEEECCCCcc
Confidence 66655444333222221 12455555555543222211112445555554444433210 000
Q ss_pred ---CCccccccccEEeeccccCCccccccccCCCccEEeEeccCCchhhhcccccCCCcccccccccceecccccccccc
Q 045686 738 ---NNRPSFSALRRLSIILCPDIQNLTCLVHVPSLQFLSLSNCHSLEEIVGTYASGSSESRNYFSNLMAVDLDGLPTLRS 814 (885)
Q Consensus 738 ---~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 814 (885)
.+...+++|+.|++++| .++.++.+..+++|+.|++++|. +..+ ..+..+++|+.|++++|. +..
T Consensus 256 ~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~n~-l~~~---------~~~~~l~~L~~L~L~~n~-l~~ 323 (466)
T 1o6v_A 256 SNLAPLSGLTKLTELKLGAN-QISNISPLAGLTALTNLELNENQ-LEDI---------SPISNLKNLTYLTLYFNN-ISD 323 (466)
T ss_dssp CCCGGGTTCTTCSEEECCSS-CCCCCGGGTTCTTCSEEECCSSC-CSCC---------GGGGGCTTCSEEECCSSC-CSC
T ss_pred ccchhhhcCCCCCEEECCCC-ccCccccccCCCccCeEEcCCCc-ccCc---------hhhcCCCCCCEEECcCCc-CCC
Confidence 00112455555555555 44444445556666666666553 2222 125567777778777764 333
Q ss_pred ccCCccCCCCccEEeeccCCCCCCcCCCCccccCCceEEEccHh
Q 045686 815 ICSGTVAFPSLQTLSITGCPSLKKLPFNSESARRSLISVRASAE 858 (885)
Q Consensus 815 ~~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~i~~~~~ 858 (885)
++. +..+++|+.|++++| +++.+|. ...+.+|+.+....+
T Consensus 324 ~~~-~~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n 363 (466)
T 1o6v_A 324 ISP-VSSLTKLQRLFFYNN-KVSDVSS--LANLTNINWLSAGHN 363 (466)
T ss_dssp CGG-GGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSS
T ss_pred chh-hccCccCCEeECCCC-ccCCchh--hccCCCCCEEeCCCC
Confidence 322 456788888888876 5666642 345567777766543
No 16
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=5.4e-24 Score=249.46 Aligned_cols=306 Identities=17% Similarity=0.205 Sum_probs=228.0
Q ss_pred ccceEEEecccCcccccccccCCCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCch-hhhcccccc
Q 045686 512 WHEAVRLSLWGSSIDFLALVEAPSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPE-EIGRLKNLH 590 (885)
Q Consensus 512 ~~~~~~l~l~~~~i~~~~~~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~-~i~~L~~L~ 590 (885)
+.+++.+++.+|.+...+...+..+++|++|++++|.+.. +++..|..+++|++|+|++| .+..+|. .++++++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEE--IDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLT 126 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCE--ECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCC
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCC--CChHHhcCCCCCCEEECCCC-cCCCCCHHHHcCCCCCC
Confidence 4578899999988877432335678999999999999888 77766899999999999999 6766654 568999999
Q ss_pred eeeccCCcccccChh-hhccccccEeecCCcccccccCCcccccCcccceecccccccccccCcccccccchhhhcCccC
Q 045686 591 HLNLSNTSIGCLPTA-IKRLIKLKVLLLDGIQCHLSIPEGVISSLSSLQVFSCFSTELVELIDPLFNETAILDELNCLEH 669 (885)
Q Consensus 591 ~L~Ls~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~ 669 (885)
+|+|++|.+..+|.. ++++++|++|++++|. +..++...++++++|++|++++|.+.+. .+..+++
T Consensus 127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~------------~~~~l~~ 193 (597)
T 3oja_B 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTHV------------DLSLIPS 193 (597)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTTSCCSBC------------CGGGCTT
T ss_pred EEEeeCCCCCCCCHHHhccCCCCCEEEeeCCc-CCCCChhhhhcCCcCcEEECcCCCCCCc------------Chhhhhh
Confidence 999999999999987 5899999999999997 6666665589999999999999987642 2444566
Q ss_pred CcceeEEEechhhHHhhhCCCcccccceeEEeccccccccchhhhhhccceEEeeccCccceeecCCCCCccccccccEE
Q 045686 670 LNDLSLTLFSTEAVDKLLNSPKLQRCIRRLTIESSELLSLELGLMLSHLEILRIKCGFMKRLNIDQGLNNRPSFSALRRL 749 (885)
Q Consensus 670 L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~l~~L~~L 749 (885)
|+.|+++.+....+ .....|+.|++++|.+..++.... ++|+.|++++|.++..+ ....+++|+.|
T Consensus 194 L~~L~l~~n~l~~l-------~~~~~L~~L~ls~n~l~~~~~~~~-~~L~~L~L~~n~l~~~~------~l~~l~~L~~L 259 (597)
T 3oja_B 194 LFHANVSYNLLSTL-------AIPIAVEELDASHNSINVVRGPVN-VELTILKLQHNNLTDTA------WLLNYPGLVEV 259 (597)
T ss_dssp CSEEECCSSCCSEE-------ECCTTCSEEECCSSCCCEEECSCC-SCCCEEECCSSCCCCCG------GGGGCTTCSEE
T ss_pred hhhhhcccCccccc-------cCCchhheeeccCCcccccccccC-CCCCEEECCCCCCCCCh------hhccCCCCCEE
Confidence 77776654432221 122368888888888655543332 78889998878777642 12347889999
Q ss_pred eeccccCCccc--cccccCCCccEEeEeccCCchhhhcccccCCCcccccccccceeccccccccccccCCccCCCCccE
Q 045686 750 SIILCPDIQNL--TCLVHVPSLQFLSLSNCHSLEEIVGTYASGSSESRNYFSNLMAVDLDGLPTLRSICSGTVAFPSLQT 827 (885)
Q Consensus 750 ~L~~c~~l~~l--~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~p~L~~ 827 (885)
+|++| .+..+ ..++.+++|+.|+|++|. +..++ .....+|+|+.|+|++|. +..++..+..+++|+.
T Consensus 260 ~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~--------~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~l~~L~~ 328 (597)
T 3oja_B 260 DLSYN-ELEKIMYHPFVKMQRLERLYISNNR-LVALN--------LYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLEN 328 (597)
T ss_dssp ECCSS-CCCEEESGGGTTCSSCCEEECTTSC-CCEEE--------CSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSE
T ss_pred ECCCC-ccCCCCHHHhcCccCCCEEECCCCC-CCCCC--------cccccCCCCcEEECCCCC-CCccCcccccCCCCCE
Confidence 99988 56554 367788899999998874 44443 244668899999998864 5567766777889999
Q ss_pred EeeccCCCCCCcCCCCccccCCceEEEccHhhhhh
Q 045686 828 LSITGCPSLKKLPFNSESARRSLISVRASAEWWNQ 862 (885)
Q Consensus 828 L~i~~C~~L~~lp~~~~~~~~~l~~i~~~~~~~~~ 862 (885)
|++++| .++.+|.. ...+|+.+....+.|.|
T Consensus 329 L~L~~N-~l~~~~~~---~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 329 LYLDHN-SIVTLKLS---THHTLKNLTLSHNDWDC 359 (597)
T ss_dssp EECCSS-CCCCCCCC---TTCCCSEEECCSSCEEH
T ss_pred EECCCC-CCCCcChh---hcCCCCEEEeeCCCCCC
Confidence 999886 57777754 34677777776655554
No 17
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.89 E-value=3.4e-23 Score=241.14 Aligned_cols=339 Identities=18% Similarity=0.238 Sum_probs=207.5
Q ss_pred cceEEEecccCcccccccccCCCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCchh-hhcccccce
Q 045686 513 HEAVRLSLWGSSIDFLALVEAPSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPEE-IGRLKNLHH 591 (885)
Q Consensus 513 ~~~~~l~l~~~~i~~~~~~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~-i~~L~~L~~ 591 (885)
+++++|++++|.+.......+..+++|++|++++|.+.. +++..|.++++|++|+|++| .+..+|.. ++++++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~--~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~ 102 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINT--IEGDAFYSLGSLEHLDLSDN-HLSSLSSSWFGPLSSLKY 102 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCE--ECTTTTTTCTTCCEEECTTS-CCCSCCHHHHTTCTTCCE
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCc--cChhhccccccCCEEECCCC-ccCccCHHHhccCCCCcE
Confidence 567777777777766433456677777777777777766 66555777777777777777 55555543 777777777
Q ss_pred eeccCCcccc--cChhhhccccccEeecCCcccccccCCcccccCcccceecccccccccccCcccccccchhh------
Q 045686 592 LNLSNTSIGC--LPTAIKRLIKLKVLLLDGIQCHLSIPEGVISSLSSLQVFSCFSTELVELIDPLFNETAILDE------ 663 (885)
Q Consensus 592 L~Ls~~~i~~--lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~------ 663 (885)
|++++|.+.. .|..++++++|++|++++|..+..+|...++++++|++|++++|.+.+..+..+.....+..
T Consensus 103 L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 182 (549)
T 2z81_A 103 LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS 182 (549)
T ss_dssp EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred EECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccC
Confidence 7777777763 35567777777777777776556666444677777777777776665533322111000000
Q ss_pred ---------hcCccCCcceeEEEechhhH-----------------------------Hhh-------------------
Q 045686 664 ---------LNCLEHLNDLSLTLFSTEAV-----------------------------DKL------------------- 686 (885)
Q Consensus 664 ---------l~~L~~L~~L~l~~~~~~~~-----------------------------~~l------------------- 686 (885)
+..+++|+.|+++.+..... ..+
T Consensus 183 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~ 262 (549)
T 2z81_A 183 ESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCT 262 (549)
T ss_dssp BSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCE
T ss_pred cccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccc
Confidence 01122222222221111000 000
Q ss_pred -----------------------------------------------hC-------------CC----cccccceeEEec
Q 045686 687 -----------------------------------------------LN-------------SP----KLQRCIRRLTIE 702 (885)
Q Consensus 687 -----------------------------------------------~~-------------~~----~~~~~L~~L~l~ 702 (885)
.. .. ...++|+.|+++
T Consensus 263 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls 342 (549)
T 2z81_A 263 LNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLS 342 (549)
T ss_dssp EECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECC
T ss_pred ccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEcc
Confidence 00 00 113467888888
Q ss_pred cccccccc------hhhhhhccceEEeeccCccceeecCCCCCccccccccEEeeccccCCcccc-ccccCCCccEEeEe
Q 045686 703 SSELLSLE------LGLMLSHLEILRIKCGFMKRLNIDQGLNNRPSFSALRRLSIILCPDIQNLT-CLVHVPSLQFLSLS 775 (885)
Q Consensus 703 ~~~~~~~~------l~~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~ 775 (885)
+|.+.... +.. +++|+.|+++.|.++.++.... ....+++|+.|++++| .++.+| .++.+++|++|+++
T Consensus 343 ~N~l~~~~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~--~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~~L~~L~Ls 418 (549)
T 2z81_A 343 ENLMVEEYLKNSACKGA-WPSLQTLVLSQNHLRSMQKTGE--ILLTLKNLTSLDISRN-TFHPMPDSCQWPEKMRFLNLS 418 (549)
T ss_dssp SSCCCHHHHHHHTCTTS-STTCCEEECTTSCCCCHHHHHH--HGGGCTTCCEEECTTC-CCCCCCSCCCCCTTCCEEECT
T ss_pred CCccccccccchhhhhc-cccCcEEEccCCcccccccchh--hhhcCCCCCEEECCCC-CCccCChhhcccccccEEECC
Confidence 88744321 222 3788888888888876542100 0123788888888888 566665 46677888888888
Q ss_pred ccCCchhhhccc----------ccCCCcccccccccceeccccccccccccCCccCCCCccEEeeccCCCCCCcCCCCcc
Q 045686 776 NCHSLEEIVGTY----------ASGSSESRNYFSNLMAVDLDGLPTLRSICSGTVAFPSLQTLSITGCPSLKKLPFNSES 845 (885)
Q Consensus 776 ~~~~l~~l~~~~----------~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~ 845 (885)
+|. ++.++... ..........+++|++|++++| .+..++. ...+++|+.|++++| +++.+|.....
T Consensus 419 ~N~-l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N-~l~~ip~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~ 494 (549)
T 2z81_A 419 STG-IRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRN-KLKTLPD-ASLFPVLLVMKISRN-QLKSVPDGIFD 494 (549)
T ss_dssp TSC-CSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSS-CCSSCCC-GGGCTTCCEEECCSS-CCCCCCTTGGG
T ss_pred CCC-cccccchhcCCceEEECCCCChhhhcccCChhcEEECCCC-ccCcCCC-cccCccCCEEecCCC-ccCCcCHHHHh
Confidence 874 43332210 0001112246889999999986 5667765 456899999999995 78888887667
Q ss_pred ccCCceEEEccHhhhhh
Q 045686 846 ARRSLISVRASAEWWNQ 862 (885)
Q Consensus 846 ~~~~l~~i~~~~~~~~~ 862 (885)
...+|+.++...+.|.|
T Consensus 495 ~l~~L~~L~l~~N~~~~ 511 (549)
T 2z81_A 495 RLTSLQKIWLHTNPWDC 511 (549)
T ss_dssp GCTTCCEEECCSSCBCC
T ss_pred cCcccCEEEecCCCccC
Confidence 78899999987665544
No 18
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.89 E-value=2.9e-23 Score=230.30 Aligned_cols=289 Identities=17% Similarity=0.201 Sum_probs=234.7
Q ss_pred CCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCc-hhhhcccccceeeccCCcccccChh-hhcccc
Q 045686 534 PSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLP-EEIGRLKNLHHLNLSNTSIGCLPTA-IKRLIK 611 (885)
Q Consensus 534 ~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp-~~i~~L~~L~~L~Ls~~~i~~lp~~-i~~L~~ 611 (885)
..+++++.|++++|.++. +|..+|..+++|++|+|++| .++.+| ..++++++|++|++++|.+..+|.. ++++++
T Consensus 42 ~~l~~l~~l~l~~~~l~~--l~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 118 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRK--LPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 118 (390)
T ss_dssp GGGCCCSEEEEESCEESE--ECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cccCCceEEEecCCchhh--CChhHhcccccCcEEECCCC-cccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCC
Confidence 346789999999999998 99998999999999999999 777765 4899999999999999999888655 899999
Q ss_pred ccEeecCCcccccccCCcccccCcccceecccccccccccCcccccccchhhhcCccCCcceeEEEechhhHHhhhCCCc
Q 045686 612 LKVLLLDGIQCHLSIPEGVISSLSSLQVFSCFSTELVELIDPLFNETAILDELNCLEHLNDLSLTLFSTEAVDKLLNSPK 691 (885)
Q Consensus 612 L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~ 691 (885)
|++|++++|. +..+|...++++++|++|++++|.+.+. ....+..+++|+.|+++.+...... ..
T Consensus 119 L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~---------~~~~~~~l~~L~~L~l~~n~l~~~~-----~~ 183 (390)
T 3o6n_A 119 LTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERI---------EDDTFQATTSLQNLQLSSNRLTHVD-----LS 183 (390)
T ss_dssp CCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBC---------CTTTTSSCTTCCEEECCSSCCSBCC-----GG
T ss_pred CCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCcc---------ChhhccCCCCCCEEECCCCcCCccc-----cc
Confidence 9999999997 8899988679999999999999988652 2334677888888888766543321 12
Q ss_pred ccccceeEEeccccccccchhhhhhccceEEeeccCccceeecCCCCCccccccccEEeeccccCCccccccccCCCccE
Q 045686 692 LQRCIRRLTIESSELLSLELGLMLSHLEILRIKCGFMKRLNIDQGLNNRPSFSALRRLSIILCPDIQNLTCLVHVPSLQF 771 (885)
Q Consensus 692 ~~~~L~~L~l~~~~~~~~~l~~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~ 771 (885)
..++|+.|++++|.+..+... ++|+.|+++.+.+..++... +++|+.|++++| .++.+++++.+++|++
T Consensus 184 ~l~~L~~L~l~~n~l~~~~~~---~~L~~L~l~~n~l~~~~~~~-------~~~L~~L~l~~n-~l~~~~~l~~l~~L~~ 252 (390)
T 3o6n_A 184 LIPSLFHANVSYNLLSTLAIP---IAVEELDASHNSINVVRGPV-------NVELTILKLQHN-NLTDTAWLLNYPGLVE 252 (390)
T ss_dssp GCTTCSEEECCSSCCSEEECC---SSCSEEECCSSCCCEEECCC-------CSSCCEEECCSS-CCCCCGGGGGCTTCSE
T ss_pred cccccceeecccccccccCCC---CcceEEECCCCeeeeccccc-------cccccEEECCCC-CCcccHHHcCCCCccE
Confidence 234789999999886554322 68999999989998875432 689999999999 7888889999999999
Q ss_pred EeEeccCCchhhhcccccCCCcccccccccceeccccccccccccCCccCCCCccEEeeccCCCCCCcCCCCccccCCce
Q 045686 772 LSLSNCHSLEEIVGTYASGSSESRNYFSNLMAVDLDGLPTLRSICSGTVAFPSLQTLSITGCPSLKKLPFNSESARRSLI 851 (885)
Q Consensus 772 L~L~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~ 851 (885)
|++++|. ++.+.. ..+..+++|++|+++++ .+..++.....+|+|+.|++++| .++.+|... ....+|+
T Consensus 253 L~Ls~n~-l~~~~~-------~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~-~~l~~L~ 321 (390)
T 3o6n_A 253 VDLSYNE-LEKIMY-------HPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQ-PQFDRLE 321 (390)
T ss_dssp EECCSSC-CCEEES-------GGGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSS-CCCCCGGGH-HHHTTCS
T ss_pred EECCCCc-CCCcCh-------hHccccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCC-cceecCccc-cccCcCC
Confidence 9999995 444422 46778999999999996 56777777788999999999997 788888653 4567888
Q ss_pred EEEccHhhhhh
Q 045686 852 SVRASAEWWNQ 862 (885)
Q Consensus 852 ~i~~~~~~~~~ 862 (885)
.++...+-...
T Consensus 322 ~L~L~~N~i~~ 332 (390)
T 3o6n_A 322 NLYLDHNSIVT 332 (390)
T ss_dssp EEECCSSCCCC
T ss_pred EEECCCCccce
Confidence 88887654433
No 19
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.88 E-value=6.5e-23 Score=234.16 Aligned_cols=310 Identities=18% Similarity=0.200 Sum_probs=227.6
Q ss_pred EEecccCcccccccccCCCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcC-chhhhcccccceeecc
Q 045686 517 RLSLWGSSIDFLALVEAPSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQL-PEEIGRLKNLHHLNLS 595 (885)
Q Consensus 517 ~l~l~~~~i~~~~~~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~l-p~~i~~L~~L~~L~Ls 595 (885)
.+...++.+.. +|.. -.+++++|++++|.+.. ++...|.++++|++|+|++| .++.+ |..++++++|++|+|+
T Consensus 15 ~v~c~~~~l~~--ip~~-~~~~l~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~ 88 (477)
T 2id5_A 15 AVLCHRKRFVA--VPEG-IPTETRLLDLGKNRIKT--LNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLR 88 (477)
T ss_dssp EEECCSCCCSS--CCSC-CCTTCSEEECCSSCCCE--ECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECC
T ss_pred EEEeCCCCcCc--CCCC-CCCCCcEEECCCCccce--ECHhHccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECC
Confidence 34444455554 3321 13688899999998888 77666899999999999999 66655 7788999999999999
Q ss_pred CCcccccChh-hhccccccEeecCCcccccccCCcccccCcccceecccccccccccCcccccccchhhhcCccCCccee
Q 045686 596 NTSIGCLPTA-IKRLIKLKVLLLDGIQCHLSIPEGVISSLSSLQVFSCFSTELVELIDPLFNETAILDELNCLEHLNDLS 674 (885)
Q Consensus 596 ~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~L~ 674 (885)
+|.+..+|.. +.++++|++|++++|. +..++...+.++++|++|++++|.+.+. ....+..+++|+.|+
T Consensus 89 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~---------~~~~~~~l~~L~~L~ 158 (477)
T 2id5_A 89 SNRLKLIPLGVFTGLSNLTKLDISENK-IVILLDYMFQDLYNLKSLEVGDNDLVYI---------SHRAFSGLNSLEQLT 158 (477)
T ss_dssp SSCCCSCCTTSSTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEEECCTTCCEE---------CTTSSTTCTTCCEEE
T ss_pred CCcCCccCcccccCCCCCCEEECCCCc-cccCChhHccccccCCEEECCCCcccee---------ChhhccCCCCCCEEE
Confidence 9999888876 6889999999999997 5555544588999999999999887642 233566778888888
Q ss_pred EEEechhhHHh--hhCCCcccccceeEEeccccccccc---hhhhhhccceEEee-ccCccceeecCCCCCccccccccE
Q 045686 675 LTLFSTEAVDK--LLNSPKLQRCIRRLTIESSELLSLE---LGLMLSHLEILRIK-CGFMKRLNIDQGLNNRPSFSALRR 748 (885)
Q Consensus 675 l~~~~~~~~~~--l~~~~~~~~~L~~L~l~~~~~~~~~---l~~~~~~L~~L~l~-~~~l~~l~~~~~~~~~~~l~~L~~ 748 (885)
+..+....+.. +.. .++|+.|++++|.+..+. +..+ ++|+.|+++ ++.+..++..... ..+|+.
T Consensus 159 l~~n~l~~~~~~~l~~----l~~L~~L~l~~n~i~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~ 228 (477)
T 2id5_A 159 LEKCNLTSIPTEALSH----LHGLIVLRLRHLNINAIRDYSFKRL-YRLKVLEISHWPYLDTMTPNCLY-----GLNLTS 228 (477)
T ss_dssp EESCCCSSCCHHHHTT----CTTCCEEEEESCCCCEECTTCSCSC-TTCCEEEEECCTTCCEECTTTTT-----TCCCSE
T ss_pred CCCCcCcccChhHhcc----cCCCcEEeCCCCcCcEeChhhcccC-cccceeeCCCCccccccCccccc-----CccccE
Confidence 88765443321 222 237889999988854433 3333 889999994 4445555544433 458999
Q ss_pred EeeccccCCcccc--ccccCCCccEEeEeccCCchhhhcccccCCCcccccccccceeccccccccccccCCccCCCCcc
Q 045686 749 LSIILCPDIQNLT--CLVHVPSLQFLSLSNCHSLEEIVGTYASGSSESRNYFSNLMAVDLDGLPTLRSICSGTVAFPSLQ 826 (885)
Q Consensus 749 L~L~~c~~l~~l~--~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~p~L~ 826 (885)
|++++| .++.++ .+..+++|+.|+|++|. +..++. ..+..+++|+.|+|+++......+..+..+++|+
T Consensus 229 L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 299 (477)
T 2id5_A 229 LSITHC-NLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEG-------SMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLR 299 (477)
T ss_dssp EEEESS-CCCSCCHHHHTTCTTCCEEECCSSC-CCEECT-------TSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCC
T ss_pred EECcCC-cccccCHHHhcCccccCeeECCCCc-CCccCh-------hhccccccCCEEECCCCccceECHHHhcCcccCC
Confidence 999998 677776 57789999999999985 444432 3567889999999998754444456677889999
Q ss_pred EEeeccCCCCCCcCCCCccccCCceEEEccHhhhhh
Q 045686 827 TLSITGCPSLKKLPFNSESARRSLISVRASAEWWNQ 862 (885)
Q Consensus 827 ~L~i~~C~~L~~lp~~~~~~~~~l~~i~~~~~~~~~ 862 (885)
.|++++| .++.+|......+.+|+.+....+-|.|
T Consensus 300 ~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 300 VLNVSGN-QLTTLEESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp EEECCSS-CCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred EEECCCC-cCceeCHhHcCCCcccCEEEccCCCccC
Confidence 9999995 7888887766667788888776655543
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.88 E-value=1.5e-22 Score=233.95 Aligned_cols=334 Identities=18% Similarity=0.180 Sum_probs=207.2
Q ss_pred cceEEEecccCcccccccccCCCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCchhhhccccccee
Q 045686 513 HEAVRLSLWGSSIDFLALVEAPSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPEEIGRLKNLHHL 592 (885)
Q Consensus 513 ~~~~~l~l~~~~i~~~~~~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L 592 (885)
+++++|++++|.+.......+..+++|++|++++|.+.. +++..|.++++|++|+|++| .++.+|.. .+++|++|
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~--~l~~L~~L 95 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQY--LDISVFKFNQELEYLDLSHN-KLVKISCH--PTVNLKHL 95 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCE--EEGGGGTTCTTCCEEECCSS-CCCEEECC--CCCCCSEE
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCC--cChHHhhcccCCCEEecCCC-ceeecCcc--ccCCccEE
Confidence 689999999999887433467889999999999999887 76666899999999999999 88888887 89999999
Q ss_pred eccCCcccc--cChhhhccccccEeecCCcccccccCCcccccCccc--ceeccccccc--ccccCccccccc-------
Q 045686 593 NLSNTSIGC--LPTAIKRLIKLKVLLLDGIQCHLSIPEGVISSLSSL--QVFSCFSTEL--VELIDPLFNETA------- 659 (885)
Q Consensus 593 ~Ls~~~i~~--lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L--~~L~l~~~~~--~~~~~~~~~~~~------- 659 (885)
++++|.+.. +|..++++++|++|++++|. +... .+..+++| ++|++++|.+ .+..+..+....
T Consensus 96 ~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~~---~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~ 171 (520)
T 2z7x_B 96 DLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEKS---SVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIV 171 (520)
T ss_dssp ECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCGG---GGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEE
T ss_pred eccCCccccccchhhhccCCcceEEEecCcc-cchh---hccccccceeeEEEeecccccccccccccccccccceEEEE
Confidence 999999875 57889999999999999986 4432 26677777 8888888776 332222211100
Q ss_pred ----------------------------------------chhhhcCccCCc---------------------------c
Q 045686 660 ----------------------------------------ILDELNCLEHLN---------------------------D 672 (885)
Q Consensus 660 ----------------------------------------~l~~l~~L~~L~---------------------------~ 672 (885)
.+..+..+++|+ .
T Consensus 172 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~ 251 (520)
T 2z7x_B 172 FPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWY 251 (520)
T ss_dssp CCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSE
T ss_pred eccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccE
Confidence 011122233333 3
Q ss_pred eeEEEechh-hHHhhh-CC-Cccccc--------------------------ceeEEeccccccccchhhhhhccceEEe
Q 045686 673 LSLTLFSTE-AVDKLL-NS-PKLQRC--------------------------IRRLTIESSELLSLELGLMLSHLEILRI 723 (885)
Q Consensus 673 L~l~~~~~~-~~~~l~-~~-~~~~~~--------------------------L~~L~l~~~~~~~~~l~~~~~~L~~L~l 723 (885)
|+++.+... .++... .. ....+. |+.|++++|.+........+++|+.|++
T Consensus 252 L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L 331 (520)
T 2z7x_B 252 FSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDF 331 (520)
T ss_dssp EEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEEC
T ss_pred EEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEe
Confidence 333322111 000000 00 011112 4444444444322221122366666666
Q ss_pred eccCccceeecCCCCCccccccccEEeeccccCCcccc----ccccCCCccEEeEeccCCchhhhcccccC---------
Q 045686 724 KCGFMKRLNIDQGLNNRPSFSALRRLSIILCPDIQNLT----CLVHVPSLQFLSLSNCHSLEEIVGTYASG--------- 790 (885)
Q Consensus 724 ~~~~l~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~----~l~~l~~L~~L~L~~~~~l~~l~~~~~~~--------- 790 (885)
+.|.+....+... ..+++|+.|++++| .++.++ .++.+++|++|++++|.....++......
T Consensus 332 s~n~l~~~~~~~~----~~l~~L~~L~L~~N-~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~L 406 (520)
T 2z7x_B 332 SNNLLTDTVFENC----GHLTELETLILQMN-QLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNM 406 (520)
T ss_dssp CSSCCCTTTTTTC----CCCSSCCEEECCSS-CCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEEC
T ss_pred ECCccChhhhhhh----ccCCCCCEEEccCC-ccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEEC
Confidence 6666554222211 23666777777766 455432 35566677777776664322233210000
Q ss_pred ----C-Ccccccc-cccceeccccccccccccCCccCCCCccEEeeccCCCCCCcCCCCccccCCceEEEccHhhhhh
Q 045686 791 ----S-SESRNYF-SNLMAVDLDGLPTLRSICSGTVAFPSLQTLSITGCPSLKKLPFNSESARRSLISVRASAEWWNQ 862 (885)
Q Consensus 791 ----~-~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~i~~~~~~~~~ 862 (885)
. ......+ ++|+.|++++| .+..++.....+++|++|++++| +++.+|........+|+.++...+.|.|
T Consensus 407 s~N~l~~~~~~~l~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 407 SSNILTDTIFRCLPPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHTNPWDC 482 (520)
T ss_dssp CSSCCCGGGGGSCCTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cCCCCCcchhhhhcccCCEEECCCC-cccccchhhhcCCCCCEEECCCC-cCCccCHHHhccCCcccEEECcCCCCcc
Confidence 0 0011122 57888888876 45677776778999999999996 7889998756677889999887766654
No 21
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.88 E-value=1.3e-22 Score=239.16 Aligned_cols=126 Identities=21% Similarity=0.194 Sum_probs=90.6
Q ss_pred CcCCccceEEEecccCcccccccccCCCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCc-hhhhcc
Q 045686 508 SFDGWHEAVRLSLWGSSIDFLALVEAPSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLP-EEIGRL 586 (885)
Q Consensus 508 ~~~~~~~~~~l~l~~~~i~~~~~~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp-~~i~~L 586 (885)
.+.+++++++|++++|.+.......+.++++|++|++++|.+.. +++..|+++++|++|+|++| .+..+| ..++++
T Consensus 51 ~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l 127 (606)
T 3vq2_A 51 SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQS--FSPGSFSGLTSLENLVAVET-KLASLESFPIGQL 127 (606)
T ss_dssp TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCC--CCTTSSTTCTTCCEEECTTS-CCCCSSSSCCTTC
T ss_pred hccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccc--cChhhcCCcccCCEEEccCC-ccccccccccCCC
Confidence 45667788888888887776434456778888888888887777 65555788888888888888 666555 667888
Q ss_pred cccceeeccCCccc--ccChhhhccccccEeecCCcccccccCCcccccCccc
Q 045686 587 KNLHHLNLSNTSIG--CLPTAIKRLIKLKVLLLDGIQCHLSIPEGVISSLSSL 637 (885)
Q Consensus 587 ~~L~~L~Ls~~~i~--~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L 637 (885)
++|++|++++|.+. .+|..++++++|++|++++|. +..++...++.+++|
T Consensus 128 ~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L 179 (606)
T 3vq2_A 128 ITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY-IQTITVNDLQFLREN 179 (606)
T ss_dssp TTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC-CCEECTTTTHHHHHC
T ss_pred CCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc-ceecChhhhhhhhcc
Confidence 88888888888775 467778888888888888875 444443334444443
No 22
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.88 E-value=1.9e-22 Score=237.78 Aligned_cols=325 Identities=17% Similarity=0.132 Sum_probs=199.8
Q ss_pred cceEEEecccCcccccccccCCCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCc-Cchhhhcccccce
Q 045686 513 HEAVRLSLWGSSIDFLALVEAPSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQ-LPEEIGRLKNLHH 591 (885)
Q Consensus 513 ~~~~~l~l~~~~i~~~~~~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~-lp~~i~~L~~L~~ 591 (885)
+.+++|++++|.++......+.++++|++|++++|.+.. +++..|.++++|++|+|++| .+.. .|..++++++|++
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~--~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~ 109 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW--IHEDTFQSQHRLDTLVLTAN-PLIFMAETALSGPKALKH 109 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCE--ECTTTTTTCTTCCEEECTTC-CCSEECTTTTSSCTTCCE
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccce--eChhhccCccccCeeeCCCC-cccccChhhhcccccccE
Confidence 478999999999988555578899999999999998887 76666899999999999999 5554 4778999999999
Q ss_pred eeccCCccccc-ChhhhccccccEeecCCcccccccCCcccccCcccceecccccccccccCcccccccchhhhcCccCC
Q 045686 592 LNLSNTSIGCL-PTAIKRLIKLKVLLLDGIQCHLSIPEGVISSLSSLQVFSCFSTELVELIDPLFNETAILDELNCLEHL 670 (885)
Q Consensus 592 L~Ls~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L 670 (885)
|++++|.+..+ |..++++++|++|++++|. +..++...+..+++|++|++++|.+.+. ....+..+++|
T Consensus 110 L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~---------~~~~~~~l~~L 179 (606)
T 3t6q_A 110 LFFIQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAIHYL---------SKEDMSSLQQA 179 (606)
T ss_dssp EECTTSCCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECCSSCCCEE---------CHHHHHTTTTC
T ss_pred eeccccCcccCCcchhccCCcccEEECCCCc-ccccCcccccCCcccCEEEcccCccccc---------Chhhhhhhccc
Confidence 99999999887 5568999999999999997 6655322255699999999999987653 12233344444
Q ss_pred c--ceeEEEechhhHH-------------------------hhhCC-----------------------Ccc-cccceeE
Q 045686 671 N--DLSLTLFSTEAVD-------------------------KLLNS-----------------------PKL-QRCIRRL 699 (885)
Q Consensus 671 ~--~L~l~~~~~~~~~-------------------------~l~~~-----------------------~~~-~~~L~~L 699 (885)
+ .|+++.+...... .+... ..+ ...++.|
T Consensus 180 ~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L 259 (606)
T 3t6q_A 180 TNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESI 259 (606)
T ss_dssp CSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEE
T ss_pred ceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEE
Confidence 4 2222211110000 00000 000 0146667
Q ss_pred Eeccccccccc---hhhhhhccceEEeeccCccceeecCCCCCccccccccEEeeccccCCccc--cccccCCCccEEeE
Q 045686 700 TIESSELLSLE---LGLMLSHLEILRIKCGFMKRLNIDQGLNNRPSFSALRRLSIILCPDIQNL--TCLVHVPSLQFLSL 774 (885)
Q Consensus 700 ~l~~~~~~~~~---l~~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~l--~~l~~l~~L~~L~L 774 (885)
++++|.+..+. +..+ ++|+.|+++.+.++.++..... +++|+.|++++| .++.+ ..+..+++|++|++
T Consensus 260 ~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~lp~~l~~-----l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l 332 (606)
T 3t6q_A 260 NLQKHYFFNISSNTFHCF-SGLQELDLTATHLSELPSGLVG-----LSTLKKLVLSAN-KFENLCQISASNFPSLTHLSI 332 (606)
T ss_dssp ECTTCCCSSCCTTTTTTC-TTCSEEECTTSCCSCCCSSCCS-----CTTCCEEECTTC-CCSBGGGGCGGGCTTCSEEEC
T ss_pred EeecCccCccCHHHhccc-cCCCEEeccCCccCCCChhhcc-----cccCCEEECccC-CcCcCchhhhhccCcCCEEEC
Confidence 77666644333 2233 7777777777777766544332 667777777776 44443 24556666666666
Q ss_pred eccCCchhhhccc-------------------ccCCCcccccccccceeccccccccccccCCccCCCCccEEeeccCCC
Q 045686 775 SNCHSLEEIVGTY-------------------ASGSSESRNYFSNLMAVDLDGLPTLRSICSGTVAFPSLQTLSITGCPS 835 (885)
Q Consensus 775 ~~~~~l~~l~~~~-------------------~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~p~L~~L~i~~C~~ 835 (885)
++|.....++... .......+..+++|++|++++|......+..+..+++|+.|++++|.-
T Consensus 333 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 412 (606)
T 3t6q_A 333 KGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRL 412 (606)
T ss_dssp CSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCE
T ss_pred CCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcC
Confidence 6664322222100 000012344555666666665543333344455566666666666532
Q ss_pred CCCcCCCCccccCCceEEEccH
Q 045686 836 LKKLPFNSESARRSLISVRASA 857 (885)
Q Consensus 836 L~~lp~~~~~~~~~l~~i~~~~ 857 (885)
-...|........+|+.+....
T Consensus 413 ~~~~~~~~~~~l~~L~~L~l~~ 434 (606)
T 3t6q_A 413 KVKDAQSPFQNLHLLKVLNLSH 434 (606)
T ss_dssp ECCTTCCTTTTCTTCCEEECTT
T ss_pred CCcccchhhhCcccCCEEECCC
Confidence 2233333344456666666543
No 23
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.88 E-value=1.1e-22 Score=229.25 Aligned_cols=221 Identities=16% Similarity=0.208 Sum_probs=112.7
Q ss_pred ccceEEEecccCcccccccccCCCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCchhhhcccccce
Q 045686 512 WHEAVRLSLWGSSIDFLALVEAPSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPEEIGRLKNLHH 591 (885)
Q Consensus 512 ~~~~~~l~l~~~~i~~~~~~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~ 591 (885)
+++++.|++++|.+.. ++.+..+++|++|++++|.+.. +| ++.+++|++|++++| .++.+| ++++++|++
T Consensus 41 l~~L~~L~Ls~n~l~~--~~~l~~l~~L~~L~Ls~n~l~~--~~---~~~l~~L~~L~Ls~N-~l~~~~--~~~l~~L~~ 110 (457)
T 3bz5_A 41 LATLTSLDCHNSSITD--MTGIEKLTGLTKLICTSNNITT--LD---LSQNTNLTYLACDSN-KLTNLD--VTPLTKLTY 110 (457)
T ss_dssp HTTCCEEECCSSCCCC--CTTGGGCTTCSEEECCSSCCSC--CC---CTTCTTCSEEECCSS-CCSCCC--CTTCTTCCE
T ss_pred cCCCCEEEccCCCccc--ChhhcccCCCCEEEccCCcCCe--Ec---cccCCCCCEEECcCC-CCceee--cCCCCcCCE
Confidence 4456666666666555 3445555666666666666555 43 455666666666666 555554 556666666
Q ss_pred eeccCCcccccChhhhccccccEeecCCcccccccCCcccccCcccceecccccccccccCcccccccchhhhcCccCCc
Q 045686 592 LNLSNTSIGCLPTAIKRLIKLKVLLLDGIQCHLSIPEGVISSLSSLQVFSCFSTELVELIDPLFNETAILDELNCLEHLN 671 (885)
Q Consensus 592 L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 671 (885)
|++++|++..+| ++++++|++|++++|. +..++ ++++++|++|++++|...+. + .+..+++|+
T Consensus 111 L~L~~N~l~~l~--~~~l~~L~~L~l~~N~-l~~l~---l~~l~~L~~L~l~~n~~~~~----------~-~~~~l~~L~ 173 (457)
T 3bz5_A 111 LNCDTNKLTKLD--VSQNPLLTYLNCARNT-LTEID---VSHNTQLTELDCHLNKKITK----------L-DVTPQTQLT 173 (457)
T ss_dssp EECCSSCCSCCC--CTTCTTCCEEECTTSC-CSCCC---CTTCTTCCEEECTTCSCCCC----------C-CCTTCTTCC
T ss_pred EECCCCcCCeec--CCCCCcCCEEECCCCc-cceec---cccCCcCCEEECCCCCcccc----------c-ccccCCcCC
Confidence 666666665554 5566666666666664 44443 45566666666665543321 1 233444555
Q ss_pred ceeEEEechhhHHhhhCCCcccccceeEEeccccccccchhhhhhccceEEeeccCccceeecCCCCCccccccccEEee
Q 045686 672 DLSLTLFSTEAVDKLLNSPKLQRCIRRLTIESSELLSLELGLMLSHLEILRIKCGFMKRLNIDQGLNNRPSFSALRRLSI 751 (885)
Q Consensus 672 ~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~l~~L~~L~L 751 (885)
.|+++.+....++ +. ..++|+.|++++|.+..+++..+ ++|+.|+++.|.++.++ .. .+++|+.|++
T Consensus 174 ~L~ls~n~l~~l~-l~----~l~~L~~L~l~~N~l~~~~l~~l-~~L~~L~Ls~N~l~~ip--~~-----~l~~L~~L~l 240 (457)
T 3bz5_A 174 TLDCSFNKITELD-VS----QNKLLNRLNCDTNNITKLDLNQN-IQLTFLDCSSNKLTEID--VT-----PLTQLTYFDC 240 (457)
T ss_dssp EEECCSSCCCCCC-CT----TCTTCCEEECCSSCCSCCCCTTC-TTCSEEECCSSCCSCCC--CT-----TCTTCSEEEC
T ss_pred EEECCCCccceec-cc----cCCCCCEEECcCCcCCeeccccC-CCCCEEECcCCcccccC--cc-----ccCCCCEEEe
Confidence 5555443332221 11 11245555555555444443333 55555555555555443 11 2455555555
Q ss_pred ccccCCccccccccCCCccEEeE
Q 045686 752 ILCPDIQNLTCLVHVPSLQFLSL 774 (885)
Q Consensus 752 ~~c~~l~~l~~l~~l~~L~~L~L 774 (885)
++| .++.++ ++.+++|+.|++
T Consensus 241 ~~N-~l~~~~-~~~l~~L~~L~l 261 (457)
T 3bz5_A 241 SVN-PLTELD-VSTLSKLTTLHC 261 (457)
T ss_dssp CSS-CCSCCC-CTTCTTCCEEEC
T ss_pred eCC-cCCCcC-HHHCCCCCEEec
Confidence 555 344433 333444443333
No 24
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=1.6e-22 Score=236.94 Aligned_cols=283 Identities=19% Similarity=0.225 Sum_probs=225.6
Q ss_pred cCCccceEEEecccCcccccccccCCCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCchh-hhccc
Q 045686 509 FDGWHEAVRLSLWGSSIDFLALVEAPSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPEE-IGRLK 587 (885)
Q Consensus 509 ~~~~~~~~~l~l~~~~i~~~~~~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~-i~~L~ 587 (885)
+..+++++.|++.+|.+.......+..+++|++|++++|.+.. +++..|+++++|++|+|++| .++.+|.. +++++
T Consensus 71 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~ 147 (597)
T 3oja_B 71 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY--LPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTP 147 (597)
T ss_dssp HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCT
T ss_pred HccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCC--CCHHHHcCCCCCCEEEeeCC-CCCCCCHHHhccCC
Confidence 3456789999999999988544578899999999999999988 88888999999999999999 88888876 48999
Q ss_pred ccceeeccCCcccccCh-hhhccccccEeecCCcccccccCCcccccCcccceecccccccccccCcccccccchhhhcC
Q 045686 588 NLHHLNLSNTSIGCLPT-AIKRLIKLKVLLLDGIQCHLSIPEGVISSLSSLQVFSCFSTELVELIDPLFNETAILDELNC 666 (885)
Q Consensus 588 ~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~ 666 (885)
+|++|++++|.+..+|. .++++++|++|++++|. +..++ ++.+++|++|++++|.+.+ +..
T Consensus 148 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~---~~~l~~L~~L~l~~n~l~~--------------l~~ 209 (597)
T 3oja_B 148 KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD---LSLIPSLFHANVSYNLLST--------------LAI 209 (597)
T ss_dssp TCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC-CSBCC---GGGCTTCSEEECCSSCCSE--------------EEC
T ss_pred CCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC-CCCcC---hhhhhhhhhhhcccCcccc--------------ccC
Confidence 99999999999987765 59999999999999997 66665 6688999999999987653 233
Q ss_pred ccCCcceeEEEechhhHHhhhCCCcccccceeEEeccccccccchhhhhhccceEEeeccCccceeecCCCCCccccccc
Q 045686 667 LEHLNDLSLTLFSTEAVDKLLNSPKLQRCIRRLTIESSELLSLELGLMLSHLEILRIKCGFMKRLNIDQGLNNRPSFSAL 746 (885)
Q Consensus 667 L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~l~~L 746 (885)
..+|+.|+++.+....++.. ...+|+.|++++|.+........+++|+.|+++.|.+..+.+..+. .+++|
T Consensus 210 ~~~L~~L~ls~n~l~~~~~~-----~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~----~l~~L 280 (597)
T 3oja_B 210 PIAVEELDASHNSINVVRGP-----VNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFV----KMQRL 280 (597)
T ss_dssp CTTCSEEECCSSCCCEEECS-----CCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGT----TCSSC
T ss_pred CchhheeeccCCcccccccc-----cCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhc----CccCC
Confidence 44667777765544332211 1247999999999966555333349999999998999887655433 48999
Q ss_pred cEEeeccccCCcccc-ccccCCCccEEeEeccCCchhhhcccccCCCcccccccccceeccccccccccccCCccCCCCc
Q 045686 747 RRLSIILCPDIQNLT-CLVHVPSLQFLSLSNCHSLEEIVGTYASGSSESRNYFSNLMAVDLDGLPTLRSICSGTVAFPSL 825 (885)
Q Consensus 747 ~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~p~L 825 (885)
+.|+|++| .++.++ .++.+++|+.|+|++|. +..++. .+..+++|++|+|++|. +..++ ...+++|
T Consensus 281 ~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N~-l~~i~~--------~~~~l~~L~~L~L~~N~-l~~~~--~~~~~~L 347 (597)
T 3oja_B 281 ERLYISNN-RLVALNLYGQPIPTLKVLDLSHNH-LLHVER--------NQPQFDRLENLYLDHNS-IVTLK--LSTHHTL 347 (597)
T ss_dssp CEEECTTS-CCCEEECSSSCCTTCCEEECCSSC-CCCCGG--------GHHHHTTCSEEECCSSC-CCCCC--CCTTCCC
T ss_pred CEEECCCC-CCCCCCcccccCCCCcEEECCCCC-CCccCc--------ccccCCCCCEEECCCCC-CCCcC--hhhcCCC
Confidence 99999999 677765 44579999999999995 445543 56789999999999975 44443 6678999
Q ss_pred cEEeeccCC
Q 045686 826 QTLSITGCP 834 (885)
Q Consensus 826 ~~L~i~~C~ 834 (885)
+.|++++|+
T Consensus 348 ~~L~l~~N~ 356 (597)
T 3oja_B 348 KNLTLSHND 356 (597)
T ss_dssp SEEECCSSC
T ss_pred CEEEeeCCC
Confidence 999999975
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.88 E-value=4.2e-22 Score=232.16 Aligned_cols=126 Identities=23% Similarity=0.249 Sum_probs=107.5
Q ss_pred cceEEEecccCcccccccccCCCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCchhhhccccccee
Q 045686 513 HEAVRLSLWGSSIDFLALVEAPSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPEEIGRLKNLHHL 592 (885)
Q Consensus 513 ~~~~~l~l~~~~i~~~~~~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L 592 (885)
++++.|++++|.+.......+..+++|++|++++|.+.. +++..|.++++|++|+|++| .++.+|.. .+++|++|
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~--~l~~L~~L 126 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRS--LDFHVFLFNQDLEYLDVSHN-RLQNISCC--PMASLRHL 126 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCE--ECTTTTTTCTTCCEEECTTS-CCCEECSC--CCTTCSEE
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCc--CCHHHhCCCCCCCEEECCCC-cCCccCcc--ccccCCEE
Confidence 689999999999988544578899999999999999988 87777999999999999999 88899987 89999999
Q ss_pred eccCCcccccC--hhhhccccccEeecCCcccccccCCcccccCccc--ceeccccccc
Q 045686 593 NLSNTSIGCLP--TAIKRLIKLKVLLLDGIQCHLSIPEGVISSLSSL--QVFSCFSTEL 647 (885)
Q Consensus 593 ~Ls~~~i~~lp--~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L--~~L~l~~~~~ 647 (885)
++++|++..+| ..++++++|++|++++|. +...+ +..+++| ++|++++|.+
T Consensus 127 ~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~-l~~~~---~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 127 DLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK-FRQLD---LLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp ECCSSCCSBCCCCGGGGGCTTCCEEEEECSB-CCTTT---TGGGTTSCEEEEEEEESSC
T ss_pred ECCCCCccccCchHhhcccCcccEEecCCCc-cccCc---hhhhhhceeeEEEeecccc
Confidence 99999998765 789999999999999986 44432 5566666 8999988877
No 26
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.87 E-value=4.9e-22 Score=234.23 Aligned_cols=329 Identities=17% Similarity=0.129 Sum_probs=196.5
Q ss_pred CcCCccceEEEecccCcccccccccCCCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcC-chhhhcc
Q 045686 508 SFDGWHEAVRLSLWGSSIDFLALVEAPSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQL-PEEIGRL 586 (885)
Q Consensus 508 ~~~~~~~~~~l~l~~~~i~~~~~~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~l-p~~i~~L 586 (885)
.+.++++++.|++++|.+.......+..+++|++|++++|.+.. +++..|.++++|++|++++| .++.+ |..++++
T Consensus 52 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n-~i~~l~~~~~~~l 128 (606)
T 3t6q_A 52 TFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIF--MAETALSGPKALKHLFFIQT-GISSIDFIPLHNQ 128 (606)
T ss_dssp TSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSE--ECTTTTSSCTTCCEEECTTS-CCSCGGGSCCTTC
T ss_pred HhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccc--cChhhhcccccccEeecccc-CcccCCcchhccC
Confidence 45667789999999988877545567888999999999998877 66666888999999999998 67766 6678889
Q ss_pred cccceeeccCCcccccC-hhhhccccccEeecCCcccccccCCcccccCcccc--eecccccccccccCcccccc-----
Q 045686 587 KNLHHLNLSNTSIGCLP-TAIKRLIKLKVLLLDGIQCHLSIPEGVISSLSSLQ--VFSCFSTELVELIDPLFNET----- 658 (885)
Q Consensus 587 ~~L~~L~Ls~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~--~L~l~~~~~~~~~~~~~~~~----- 658 (885)
++|++|++++|.+..++ ..+..+++|++|++++|. +..++...++.+++|+ .|++++|.+.+..+..+...
T Consensus 129 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L 207 (606)
T 3t6q_A 129 KTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA-IHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSL 207 (606)
T ss_dssp TTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSC-CCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEE
T ss_pred CcccEEECCCCcccccCcccccCCcccCEEEcccCc-ccccChhhhhhhcccceeEEecCCCccCccChhHhhhcccccc
Confidence 99999999999887763 234458889999999886 5566544478888888 78888887766443322110
Q ss_pred -------------------------------------------------------------cchhhhcCccCCcceeEEE
Q 045686 659 -------------------------------------------------------------AILDELNCLEHLNDLSLTL 677 (885)
Q Consensus 659 -------------------------------------------------------------~~l~~l~~L~~L~~L~l~~ 677 (885)
.....+..+++|+.|+++.
T Consensus 208 ~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 287 (606)
T 3t6q_A 208 NFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTA 287 (606)
T ss_dssp ECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTT
T ss_pred ccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccC
Confidence 0001133445555555544
Q ss_pred echhhHHhhhCCCcccccceeEEecccccccc---chhhhhhccceEEeeccCcc-ceeecCCCCCccccccccEEeecc
Q 045686 678 FSTEAVDKLLNSPKLQRCIRRLTIESSELLSL---ELGLMLSHLEILRIKCGFMK-RLNIDQGLNNRPSFSALRRLSIIL 753 (885)
Q Consensus 678 ~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~---~l~~~~~~L~~L~l~~~~l~-~l~~~~~~~~~~~l~~L~~L~L~~ 753 (885)
+....++ ......++|+.|++++|.+... .+..+ ++|+.|+++.+.+. .++.... ..+++|+.|++++
T Consensus 288 n~l~~lp---~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~~~~~~~~~~~----~~l~~L~~L~l~~ 359 (606)
T 3t6q_A 288 THLSELP---SGLVGLSTLKKLVLSANKFENLCQISASNF-PSLTHLSIKGNTKRLELGTGCL----ENLENLRELDLSH 359 (606)
T ss_dssp SCCSCCC---SSCCSCTTCCEEECTTCCCSBGGGGCGGGC-TTCSEEECCSCSSCCBCCSSTT----TTCTTCCEEECCS
T ss_pred CccCCCC---hhhcccccCCEEECccCCcCcCchhhhhcc-CcCCEEECCCCCcccccchhhh----hccCcCCEEECCC
Confidence 3332221 1111223566666666653332 12222 56666666444443 2222211 2356677777776
Q ss_pred ccCCcccc----ccccCCCccEEeEeccCCchhhhcccccCCCcccccccccceeccccccccccccC-CccCCCCccEE
Q 045686 754 CPDIQNLT----CLVHVPSLQFLSLSNCHSLEEIVGTYASGSSESRNYFSNLMAVDLDGLPTLRSICS-GTVAFPSLQTL 828 (885)
Q Consensus 754 c~~l~~l~----~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~p~L~~L 828 (885)
| .++.+. .++.+++|++|++++|. +..+.. ..+..+++|++|+++++......+. .+..+++|+.|
T Consensus 360 n-~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~-------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 430 (606)
T 3t6q_A 360 D-DIETSDCCNLQLRNLSHLQSLNLSYNE-PLSLKT-------EAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVL 430 (606)
T ss_dssp S-CCCEEEESTTTTTTCTTCCEEECCSCS-CEEECT-------TTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEE
T ss_pred C-ccccccCcchhcccCCCCCEEECCCCc-CCcCCH-------HHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEE
Confidence 6 344432 35566777777777664 222211 2445556666666666543332222 24455666666
Q ss_pred eeccCCCCCCcCCCCccccCCceEEEccHh
Q 045686 829 SITGCPSLKKLPFNSESARRSLISVRASAE 858 (885)
Q Consensus 829 ~i~~C~~L~~lp~~~~~~~~~l~~i~~~~~ 858 (885)
++++| .++..+........+|+.+....+
T Consensus 431 ~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n 459 (606)
T 3t6q_A 431 NLSHS-LLDISSEQLFDGLPALQHLNLQGN 459 (606)
T ss_dssp ECTTC-CCBTTCTTTTTTCTTCCEEECTTC
T ss_pred ECCCC-ccCCcCHHHHhCCCCCCEEECCCC
Confidence 66664 344444333344555555555443
No 27
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.87 E-value=2.4e-22 Score=217.66 Aligned_cols=291 Identities=14% Similarity=0.133 Sum_probs=191.4
Q ss_pred ceEEEecccCcccccccccCCCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcC-chhhhccccccee
Q 045686 514 EAVRLSLWGSSIDFLALVEAPSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQL-PEEIGRLKNLHHL 592 (885)
Q Consensus 514 ~~~~l~l~~~~i~~~~~~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~l-p~~i~~L~~L~~L 592 (885)
.++.+++.++.+.. +|.. -.++|++|++++|.+.. +++..|.++++|++|+|++| .++.+ |..++++++|++|
T Consensus 34 ~l~~l~~~~~~l~~--ip~~-~~~~l~~L~l~~n~i~~--~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 107 (332)
T 2ft3_A 34 HLRVVQCSDLGLKA--VPKE-ISPDTTLLDLQNNDISE--LRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKL 107 (332)
T ss_dssp ETTEEECCSSCCSS--CCSC-CCTTCCEEECCSSCCCE--ECTTTTTTCTTCCEEECCSS-CCCEECGGGSTTCTTCCEE
T ss_pred cCCEEECCCCCccc--cCCC-CCCCCeEEECCCCcCCc--cCHhHhhCCCCCcEEECCCC-ccCccCHhHhhCcCCCCEE
Confidence 56778888887776 4432 24788999999998887 77666899999999999999 66665 7788999999999
Q ss_pred eccCCcccccChhhhccccccEeecCCcccccccCCcccccCcccceecccccccccccCcccccccchhhhcCccCCcc
Q 045686 593 NLSNTSIGCLPTAIKRLIKLKVLLLDGIQCHLSIPEGVISSLSSLQVFSCFSTELVELIDPLFNETAILDELNCLEHLND 672 (885)
Q Consensus 593 ~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~ 672 (885)
++++|.+..+|..+. ++|++|++++|. +..+|...+.++++|++|++++|.+... ......+..+ +|+.
T Consensus 108 ~L~~n~l~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~-------~~~~~~~~~l-~L~~ 176 (332)
T 2ft3_A 108 YISKNHLVEIPPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENS-------GFEPGAFDGL-KLNY 176 (332)
T ss_dssp ECCSSCCCSCCSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBGG-------GSCTTSSCSC-CCSC
T ss_pred ECCCCcCCccCcccc--ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCccccC-------CCCcccccCC-ccCE
Confidence 999999998887765 899999999997 7788877688999999999999887531 1122334444 6666
Q ss_pred eeEEEechhhHHhhhCCCcccccceeEEeccccccccc---hhhhhhccceEEeeccCccceeecCCCCCccccccccEE
Q 045686 673 LSLTLFSTEAVDKLLNSPKLQRCIRRLTIESSELLSLE---LGLMLSHLEILRIKCGFMKRLNIDQGLNNRPSFSALRRL 749 (885)
Q Consensus 673 L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~---l~~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~l~~L~~L 749 (885)
|+++.+....++.. ..++|+.|++++|.+.... +..+ ++|+.|+++.|.++.++...+ ..+++|+.|
T Consensus 177 L~l~~n~l~~l~~~-----~~~~L~~L~l~~n~i~~~~~~~l~~l-~~L~~L~L~~N~l~~~~~~~~----~~l~~L~~L 246 (332)
T 2ft3_A 177 LRISEAKLTGIPKD-----LPETLNELHLDHNKIQAIELEDLLRY-SKLYRLGLGHNQIRMIENGSL----SFLPTLREL 246 (332)
T ss_dssp CBCCSSBCSSCCSS-----SCSSCSCCBCCSSCCCCCCTTSSTTC-TTCSCCBCCSSCCCCCCTTGG----GGCTTCCEE
T ss_pred EECcCCCCCccCcc-----ccCCCCEEECCCCcCCccCHHHhcCC-CCCCEEECCCCcCCcCChhHh----hCCCCCCEE
Confidence 76665543332211 1246777777777644433 3333 677777777777766554322 236777777
Q ss_pred eeccccCCcccc-ccccCCCccEEeEeccCCchhhhcccccCCCcccccccccceecccccccc--ccccCCccCCCCcc
Q 045686 750 SIILCPDIQNLT-CLVHVPSLQFLSLSNCHSLEEIVGTYASGSSESRNYFSNLMAVDLDGLPTL--RSICSGTVAFPSLQ 826 (885)
Q Consensus 750 ~L~~c~~l~~l~-~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l--~~~~~~~~~~p~L~ 826 (885)
++++| .++.+| .+..+++|+.|++++|. ++.++....... .....+++|+.|++.+++.. ...+..+..+++|+
T Consensus 247 ~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~-~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~ 323 (332)
T 2ft3_A 247 HLDNN-KLSRVPAGLPDLKLLQVVYLHTNN-ITKVGVNDFCPV-GFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRL 323 (332)
T ss_dssp ECCSS-CCCBCCTTGGGCTTCCEEECCSSC-CCBCCTTSSSCS-SCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCST
T ss_pred ECCCC-cCeecChhhhcCccCCEEECCCCC-CCccChhHcccc-ccccccccccceEeecCcccccccCcccccccchhh
Confidence 77777 566654 46777777777777763 444432110000 01112566777777776643 22233445566777
Q ss_pred EEeeccCC
Q 045686 827 TLSITGCP 834 (885)
Q Consensus 827 ~L~i~~C~ 834 (885)
.|++++|.
T Consensus 324 ~l~l~~n~ 331 (332)
T 2ft3_A 324 AIQFGNYK 331 (332)
T ss_dssp TEEC----
T ss_pred hhhccccc
Confidence 77777654
No 28
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.87 E-value=1.7e-22 Score=238.04 Aligned_cols=272 Identities=15% Similarity=0.208 Sum_probs=172.5
Q ss_pred chhHHHHHhhcCCccCCCCc-hhhhcCCcccEEecCCCCCCC-cCchhhhcccccceeeccCCcccccChhhhcccc-cc
Q 045686 537 PQVRTLLARLTMLHTLPIPS-RFFDSMDALEVLDLSYNLDLN-QLPEEIGRLKNLHHLNLSNTSIGCLPTAIKRLIK-LK 613 (885)
Q Consensus 537 ~~Lr~L~l~~~~l~~~~~~~-~~~~~l~~L~~L~Ls~~~~i~-~lp~~i~~L~~L~~L~Ls~~~i~~lp~~i~~L~~-L~ 613 (885)
++|++|++++|.+.. +|. ..++.+++|++|++++| .+. .+| .++++++|++|++++|.+..+|..+.++++ |+
T Consensus 305 ~~L~~L~L~~n~l~~--ip~~~~l~~l~~L~~L~L~~N-~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~ 380 (636)
T 4eco_A 305 EKIQIIYIGYNNLKT--FPVETSLQKMKKLGMLECLYN-QLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVE 380 (636)
T ss_dssp GTCCEEECCSSCCSS--CCCHHHHTTCTTCCEEECCSC-CCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCC
T ss_pred CCCCEEECCCCcCCc--cCchhhhccCCCCCEEeCcCC-cCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCc
Confidence 555555555555554 554 12555555555555555 444 555 555555555555555555555555555555 55
Q ss_pred EeecCCcccccccCCcccccCc--ccceecccccccccccCcccccccchhhhc-------CccCCcceeEEEechhhHH
Q 045686 614 VLLLDGIQCHLSIPEGVISSLS--SLQVFSCFSTELVELIDPLFNETAILDELN-------CLEHLNDLSLTLFSTEAVD 684 (885)
Q Consensus 614 ~L~l~~~~~l~~lp~~~i~~L~--~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~-------~L~~L~~L~l~~~~~~~~~ 684 (885)
+|++++|. +..+|.. +..++ +|++|++++|.+.+.+| ..+. .+.+|+.|+++.+....++
T Consensus 381 ~L~Ls~N~-l~~lp~~-~~~~~l~~L~~L~Ls~N~l~~~~p---------~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp 449 (636)
T 4eco_A 381 NLSFAHNK-LKYIPNI-FDAKSVSVMSAIDFSYNEIGSVDG---------KNFDPLDPTPFKGINVSSINLSNNQISKFP 449 (636)
T ss_dssp EEECCSSC-CSSCCSC-CCTTCSSCEEEEECCSSCTTTTTT---------CSSCTTCSSCCCCCCEEEEECCSSCCCSCC
T ss_pred EEEccCCc-Ccccchh-hhhcccCccCEEECcCCcCCCcch---------hhhcccccccccCCCCCEEECcCCccCcCC
Confidence 55555554 4455543 44333 55566665555544322 2233 5567888888766544332
Q ss_pred hhhCCCcccccceeEEeccccccccchh--hh-------hhccceEEeeccCccceeecCCCCCccccccccEEeecccc
Q 045686 685 KLLNSPKLQRCIRRLTIESSELLSLELG--LM-------LSHLEILRIKCGFMKRLNIDQGLNNRPSFSALRRLSIILCP 755 (885)
Q Consensus 685 ~l~~~~~~~~~L~~L~l~~~~~~~~~l~--~~-------~~~L~~L~l~~~~l~~l~~~~~~~~~~~l~~L~~L~L~~c~ 755 (885)
... ....++|+.|++++|.+..++.. .. +++|+.|+++.|.++.++..... ..+++|+.|+|++|
T Consensus 450 ~~~--~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~---~~l~~L~~L~Ls~N- 523 (636)
T 4eco_A 450 KEL--FSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRA---TTLPYLVGIDLSYN- 523 (636)
T ss_dssp THH--HHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGST---TTCTTCCEEECCSS-
T ss_pred HHH--HccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhh---ccCCCcCEEECCCC-
Confidence 210 01124799999999986654421 11 13899999999999987765540 13899999999999
Q ss_pred CCcccc-ccccCCCccEEeEeccC------CchhhhcccccCCCcccccccccceeccccccccccccCCccCCCCccEE
Q 045686 756 DIQNLT-CLVHVPSLQFLSLSNCH------SLEEIVGTYASGSSESRNYFSNLMAVDLDGLPTLRSICSGTVAFPSLQTL 828 (885)
Q Consensus 756 ~l~~l~-~l~~l~~L~~L~L~~~~------~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~p~L~~L 828 (885)
.++.+| .++.+++|+.|+|++|. ....+ +..+..+++|++|+|++|.. ..++..+. ++|+.|
T Consensus 524 ~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~--------p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L 592 (636)
T 4eco_A 524 SFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREW--------PEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVL 592 (636)
T ss_dssp CCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCC--------CTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEE
T ss_pred CCCCcChhhhcCCCCCEEECCCCcccccCcccccC--------hHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEE
Confidence 566665 67899999999997654 22222 24677899999999999765 88877644 899999
Q ss_pred eeccCCCCCCcCC
Q 045686 829 SITGCPSLKKLPF 841 (885)
Q Consensus 829 ~i~~C~~L~~lp~ 841 (885)
++++|+ +..++.
T Consensus 593 ~Ls~N~-l~~~~~ 604 (636)
T 4eco_A 593 DIKDNP-NISIDL 604 (636)
T ss_dssp ECCSCT-TCEEEC
T ss_pred ECcCCC-CccccH
Confidence 999974 555554
No 29
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.87 E-value=8.5e-22 Score=212.21 Aligned_cols=239 Identities=21% Similarity=0.276 Sum_probs=163.0
Q ss_pred CCcccEEecCCCCCCCcCchhhhcccccceeeccCCcccccChhhhccccccEeecCCcccccccCCcccccCcccceec
Q 045686 562 MDALEVLDLSYNLDLNQLPEEIGRLKNLHHLNLSNTSIGCLPTAIKRLIKLKVLLLDGIQCHLSIPEGVISSLSSLQVFS 641 (885)
Q Consensus 562 l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~ 641 (885)
...+++|+|++| .++.+|..++++++|++|++++|.+..+|..++++++|++|++++|. +..+|.. ++++++|++|+
T Consensus 80 ~~~l~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~-l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSV-PLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNP-LRALPAS-IASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESS-CCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCC-CCCCCGG-GGGCTTCCEEE
T ss_pred ccceeEEEccCC-CchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCc-cccCcHH-HhcCcCCCEEE
Confidence 467888999888 78888888888899999999998888888888889999999999886 6688877 88888999999
Q ss_pred ccccccccccCcccccccchhhhcCccCCcceeEEEechhhHHhhhCCCcccccceeEEeccccccccchhhhhhccceE
Q 045686 642 CFSTELVELIDPLFNETAILDELNCLEHLNDLSLTLFSTEAVDKLLNSPKLQRCIRRLTIESSELLSLELGLMLSHLEIL 721 (885)
Q Consensus 642 l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~L~~L 721 (885)
+++|.+.+.+|..+........+..+ ++|+.|
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l------------------------------------------------~~L~~L 188 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGL------------------------------------------------VNLQSL 188 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEES------------------------------------------------TTCCEE
T ss_pred CCCCCCccccChhHhhccchhhhccC------------------------------------------------CCCCEE
Confidence 98887665433311110000011111 455555
Q ss_pred EeeccCccceeecCCCCCccccccccEEeeccccCCccc-cccccCCCccEEeEeccCCchhhhcccccCCCcccccccc
Q 045686 722 RIKCGFMKRLNIDQGLNNRPSFSALRRLSIILCPDIQNL-TCLVHVPSLQFLSLSNCHSLEEIVGTYASGSSESRNYFSN 800 (885)
Q Consensus 722 ~l~~~~l~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~l-~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~ 800 (885)
+++.|.++.++.... .+++|+.|++++| .++.+ +.++.+++|++|++++|.....++ ..+..+++
T Consensus 189 ~L~~n~l~~lp~~l~-----~l~~L~~L~L~~N-~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p--------~~~~~l~~ 254 (328)
T 4fcg_A 189 RLEWTGIRSLPASIA-----NLQNLKSLKIRNS-PLSALGPAIHHLPKLEELDLRGCTALRNYP--------PIFGGRAP 254 (328)
T ss_dssp EEEEECCCCCCGGGG-----GCTTCCEEEEESS-CCCCCCGGGGGCTTCCEEECTTCTTCCBCC--------CCTTCCCC
T ss_pred ECcCCCcCcchHhhc-----CCCCCCEEEccCC-CCCcCchhhccCCCCCEEECcCCcchhhhH--------HHhcCCCC
Confidence 555555554443322 2667777777777 45554 356677777777777776555443 25666777
Q ss_pred cceeccccccccccccCCccCCCCccEEeeccCCCCCCcCCCCccccCCceEEEccHhhhhhcccC
Q 045686 801 LMAVDLDGLPTLRSICSGTVAFPSLQTLSITGCPSLKKLPFNSESARRSLISVRASAEWWNQLEWE 866 (885)
Q Consensus 801 L~~L~l~~~~~l~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~i~~~~~~~~~l~w~ 866 (885)
|++|+|++|+.+..++..+..+++|+.|++++|+.++.+|... ..+.+++.+....++...+.+.
T Consensus 255 L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l-~~L~~L~~l~l~~~~~~~l~~~ 319 (328)
T 4fcg_A 255 LKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI-AQLPANCIILVPPHLQAQLDQH 319 (328)
T ss_dssp CCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGG-GGSCTTCEEECCGGGSCC----
T ss_pred CCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHH-hhccCceEEeCCHHHHHHHhhh
Confidence 8888887777777777777777888888888887777777554 3466777777766665555443
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.87 E-value=5.6e-22 Score=223.34 Aligned_cols=294 Identities=14% Similarity=0.140 Sum_probs=220.7
Q ss_pred cCcCCccceEEEecccCcccccccccCCCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCchhhhcc
Q 045686 507 NSFDGWHEAVRLSLWGSSIDFLALVEAPSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPEEIGRL 586 (885)
Q Consensus 507 ~~~~~~~~~~~l~l~~~~i~~~~~~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L 586 (885)
|.+..++++++|++++|.++. ++ +..+++|++|++++|.+.. ++ ++.+++|++|++++| .++.+| ++.+
T Consensus 58 ~~l~~l~~L~~L~Ls~n~l~~--~~-~~~l~~L~~L~Ls~N~l~~--~~---~~~l~~L~~L~L~~N-~l~~l~--~~~l 126 (457)
T 3bz5_A 58 TGIEKLTGLTKLICTSNNITT--LD-LSQNTNLTYLACDSNKLTN--LD---VTPLTKLTYLNCDTN-KLTKLD--VSQN 126 (457)
T ss_dssp TTGGGCTTCSEEECCSSCCSC--CC-CTTCTTCSEEECCSSCCSC--CC---CTTCTTCCEEECCSS-CCSCCC--CTTC
T ss_pred hhhcccCCCCEEEccCCcCCe--Ec-cccCCCCCEEECcCCCCce--ee---cCCCCcCCEEECCCC-cCCeec--CCCC
Confidence 667778899999999999988 43 7889999999999999988 64 788999999999999 888886 8999
Q ss_pred cccceeeccCCcccccChhhhccccccEeecCCcccccccCCcccccCcccceecccccccccccCcccccccchhhhcC
Q 045686 587 KNLHHLNLSNTSIGCLPTAIKRLIKLKVLLLDGIQCHLSIPEGVISSLSSLQVFSCFSTELVELIDPLFNETAILDELNC 666 (885)
Q Consensus 587 ~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~ 666 (885)
++|++|++++|++..+| ++++++|++|++++|..+..++ ++.+++|++|++++|.+.+. . +..
T Consensus 127 ~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~l-----------~-l~~ 189 (457)
T 3bz5_A 127 PLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITEL-----------D-VSQ 189 (457)
T ss_dssp TTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCCC-----------C-CTT
T ss_pred CcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCcccee-----------c-ccc
Confidence 99999999999998886 8899999999999997677774 78999999999999988641 1 566
Q ss_pred ccCCcceeEEEechhhHHhhhCCCcccccceeEEeccccccccchhhhhhccceEEeeccCccceeecCCCCC---cccc
Q 045686 667 LEHLNDLSLTLFSTEAVDKLLNSPKLQRCIRRLTIESSELLSLELGLMLSHLEILRIKCGFMKRLNIDQGLNN---RPSF 743 (885)
Q Consensus 667 L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~L~~L~l~~~~l~~l~~~~~~~~---~~~l 743 (885)
+++|+.|++..+....++ + ...++|+.|++++|.+..+++..+ ++|+.|+++.|.++.++......- .-..
T Consensus 190 l~~L~~L~l~~N~l~~~~-l----~~l~~L~~L~Ls~N~l~~ip~~~l-~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~ 263 (457)
T 3bz5_A 190 NKLLNRLNCDTNNITKLD-L----NQNIQLTFLDCSSNKLTEIDVTPL-TQLTYFDCSVNPLTELDVSTLSKLTTLHCIQ 263 (457)
T ss_dssp CTTCCEEECCSSCCSCCC-C----TTCTTCSEEECCSSCCSCCCCTTC-TTCSEEECCSSCCSCCCCTTCTTCCEEECTT
T ss_pred CCCCCEEECcCCcCCeec-c----ccCCCCCEEECcCCcccccCcccc-CCCCEEEeeCCcCCCcCHHHCCCCCEEeccC
Confidence 778888888766544431 2 123489999999999777775555 899999998888887764332100 0001
Q ss_pred ccccEEeeccccCCccccccccCCCccEEeEeccCCchhhhcccccCCCcccccccccceeccccccccccccCCccCCC
Q 045686 744 SALRRLSIILCPDIQNLTCLVHVPSLQFLSLSNCHSLEEIVGTYASGSSESRNYFSNLMAVDLDGLPTLRSICSGTVAFP 823 (885)
Q Consensus 744 ~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~p 823 (885)
.+|+.|++++|..+..+| .+.+++|+.|++++|..++.++.....-....+..+++|+.|+++++ .++.+ .+..++
T Consensus 264 n~L~~L~l~~n~~~~~~~-~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N-~l~~l--~l~~l~ 339 (457)
T 3bz5_A 264 TDLLEIDLTHNTQLIYFQ-AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNT-ELTEL--DVSHNT 339 (457)
T ss_dssp CCCSCCCCTTCTTCCEEE-CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTC-CCSCC--CCTTCT
T ss_pred CCCCEEECCCCccCCccc-ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCC-ccccc--ccccCC
Confidence 245566666665455554 56789999999999987776654211111123556678888888775 45554 367788
Q ss_pred CccEEeeccCCCCCCc
Q 045686 824 SLQTLSITGCPSLKKL 839 (885)
Q Consensus 824 ~L~~L~i~~C~~L~~l 839 (885)
+|+.|+++++ +++.+
T Consensus 340 ~L~~L~l~~N-~l~~l 354 (457)
T 3bz5_A 340 KLKSLSCVNA-HIQDF 354 (457)
T ss_dssp TCSEEECCSS-CCCBC
T ss_pred cCcEEECCCC-CCCCc
Confidence 9999988873 55544
No 31
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.86 E-value=2.5e-22 Score=240.44 Aligned_cols=313 Identities=13% Similarity=0.163 Sum_probs=203.4
Q ss_pred CccceEEEecccCcccccccccCCCCchhHHHHHhhcC-CccCCCCchhhhc-------CCcccEEecCCCCCCCcCch-
Q 045686 511 GWHEAVRLSLWGSSIDFLALVEAPSCPQVRTLLARLTM-LHTLPIPSRFFDS-------MDALEVLDLSYNLDLNQLPE- 581 (885)
Q Consensus 511 ~~~~~~~l~l~~~~i~~~~~~~~~~~~~Lr~L~l~~~~-l~~~~~~~~~~~~-------l~~L~~L~Ls~~~~i~~lp~- 581 (885)
.+++++.|++++|.+.......+.++++|++|++++|. +....+|.. +.. +++|++|+|++| .+..+|.
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~-i~~L~~~~~~l~~L~~L~Ls~N-~L~~ip~~ 566 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKAD-WTRLADDEDTGPKIQIFYMGYN-NLEEFPAS 566 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHH-HHHHHHCTTTTTTCCEEECCSS-CCCBCCCH
T ss_pred cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHH-HHhhhhcccccCCccEEEeeCC-cCCccCCh
Confidence 56778888887776544323445667777777777775 431014443 233 347777777777 6667776
Q ss_pred -hhhcccccceeeccCCcccccChhhhccccccEeecCCcccccccCCcccccCcc-cceecccccccccccCccccccc
Q 045686 582 -EIGRLKNLHHLNLSNTSIGCLPTAIKRLIKLKVLLLDGIQCHLSIPEGVISSLSS-LQVFSCFSTELVELIDPLFNETA 659 (885)
Q Consensus 582 -~i~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~-L~~L~l~~~~~~~~~~~~~~~~~ 659 (885)
.++++++|++|+|++|.+..+| .++++++|++|++++|. +..+|.. +.++++ |++|++++|.+. .+|..+....
T Consensus 567 ~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~-l~~lp~~-l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~ 642 (876)
T 4ecn_A 567 ASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQ-IEEIPED-FCAFTDQVEGLGFSHNKLK-YIPNIFNAKS 642 (876)
T ss_dssp HHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSC-CSCCCTT-SCEECTTCCEEECCSSCCC-SCCSCCCTTC
T ss_pred hhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCc-cccchHH-HhhccccCCEEECcCCCCC-cCchhhhccc
Confidence 6777777777777777777777 67777777777777775 4567766 667776 777777777665 3333221100
Q ss_pred --------------------chhhhc--CccCCcceeEEEechhhHHhhhCCCcccccceeEEeccccccccchh--h--
Q 045686 660 --------------------ILDELN--CLEHLNDLSLTLFSTEAVDKLLNSPKLQRCIRRLTIESSELLSLELG--L-- 713 (885)
Q Consensus 660 --------------------~l~~l~--~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~--~-- 713 (885)
....+. .+.+|+.|+++.+....++.... ...++|+.|++++|.+..++.. .
T Consensus 643 ~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~--~~l~~L~~L~Ls~N~L~~ip~~~~~~~ 720 (876)
T 4ecn_A 643 VYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELF--ATGSPISTIILSNNLMTSIPENSLKPK 720 (876)
T ss_dssp SSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHH--HTTCCCSEEECCSCCCSCCCTTSSSCT
T ss_pred cCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHH--ccCCCCCEEECCCCcCCccChHHhccc
Confidence 001111 23367777777665443332110 1124799999999986554421 1
Q ss_pred -----hhhccceEEeeccCccceeecCCCCCccccccccEEeeccccCCcccc-ccccCCCccEEeEeccCCchhhhccc
Q 045686 714 -----MLSHLEILRIKCGFMKRLNIDQGLNNRPSFSALRRLSIILCPDIQNLT-CLVHVPSLQFLSLSNCHSLEEIVGTY 787 (885)
Q Consensus 714 -----~~~~L~~L~l~~~~l~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~~~~l~~l~~~~ 787 (885)
.+++|+.|+|+.|.+..++..... ..+++|+.|+|++| .++.+| .++.+++|+.|+|++|..+..-. .
T Consensus 721 ~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~---~~l~~L~~L~Ls~N-~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~--l 794 (876)
T 4ecn_A 721 DGNYKNTYLLTTIDLRFNKLTSLSDDFRA---TTLPYLSNMDVSYN-CFSSFPTQPLNSSQLKAFGIRHQRDAEGNR--I 794 (876)
T ss_dssp TSCCTTGGGCCEEECCSSCCCCCCGGGST---TTCTTCCEEECCSS-CCSSCCCGGGGCTTCCEEECCCCBCTTCCB--C
T ss_pred cccccccCCccEEECCCCCCccchHHhhh---ccCCCcCEEEeCCC-CCCccchhhhcCCCCCEEECCCCCCccccc--c
Confidence 124899999998999877765540 13899999999999 576665 68899999999998854211100 0
Q ss_pred ccCCCcccccccccceeccccccccccccCCccCCCCccEEeeccCCCCCCcCC
Q 045686 788 ASGSSESRNYFSNLMAVDLDGLPTLRSICSGTVAFPSLQTLSITGCPSLKKLPF 841 (885)
Q Consensus 788 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~p~L~~L~i~~C~~L~~lp~ 841 (885)
....+..+..+++|+.|+|++|.. ..+|..+. ++|+.|++++|+ +..++.
T Consensus 795 ~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~-l~~i~~ 844 (876)
T 4ecn_A 795 LRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNP-NISIDV 844 (876)
T ss_dssp CCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCT-TCEEEC
T ss_pred cccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCC-CCccCh
Confidence 011234678899999999999865 88887654 799999999986 555553
No 32
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.86 E-value=9e-22 Score=223.37 Aligned_cols=308 Identities=17% Similarity=0.162 Sum_probs=216.8
Q ss_pred CcCCccceEEEecccCccc-ccccccCCCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCc-Cchh--h
Q 045686 508 SFDGWHEAVRLSLWGSSID-FLALVEAPSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQ-LPEE--I 583 (885)
Q Consensus 508 ~~~~~~~~~~l~l~~~~i~-~~~~~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~-lp~~--i 583 (885)
.+..+++++.|++++|.+. ......+..+++|++|++++|.+.. +++..|.++++|++|+|++| .++. .|.. +
T Consensus 49 ~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~ 125 (455)
T 3v47_A 49 SFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQ--LETGAFNGLANLEVLTLTQC-NLDGAVLSGNFF 125 (455)
T ss_dssp TTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCE--ECTTTTTTCTTCCEEECTTS-CCBTHHHHSSTT
T ss_pred HhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCc--cChhhccCcccCCEEeCCCC-CCCccccCcccc
Confidence 4667789999999999875 3223457889999999999998877 66656899999999999999 6654 4554 8
Q ss_pred hcccccceeeccCCccccc-Chh-hhccccccEeecCCcccccccCCcccccC---------------------------
Q 045686 584 GRLKNLHHLNLSNTSIGCL-PTA-IKRLIKLKVLLLDGIQCHLSIPEGVISSL--------------------------- 634 (885)
Q Consensus 584 ~~L~~L~~L~Ls~~~i~~l-p~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~L--------------------------- 634 (885)
+++++|++|++++|.+..+ |.. +.++++|++|++++|. +..++...+..+
T Consensus 126 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~ 204 (455)
T 3v47_A 126 KPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK-VKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEK 204 (455)
T ss_dssp TTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC-BSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHH
T ss_pred cCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc-ccccChhhhhccccccccccccccCcccccchhhccccc
Confidence 8999999999999999777 555 8899999999999997 444433225444
Q ss_pred -------cccceecccccccccccCcccccccchhhhcCccCCcceeEEEechhhH-------H---hhhCCCcccccce
Q 045686 635 -------SSLQVFSCFSTELVELIDPLFNETAILDELNCLEHLNDLSLTLFSTEAV-------D---KLLNSPKLQRCIR 697 (885)
Q Consensus 635 -------~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~~-------~---~l~~~~~~~~~L~ 697 (885)
++|++|++++|.+.+..+. .+.......+|+.|.++.+..... . .........++|+
T Consensus 205 ~~~~~~~~~L~~L~Ls~n~l~~~~~~------~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 278 (455)
T 3v47_A 205 CGNPFKNTSITTLDLSGNGFKESMAK------RFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVK 278 (455)
T ss_dssp HCCTTTTCEEEEEECTTSCCCHHHHH------HHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCC
T ss_pred cccccccceeeeEecCCCcccccchh------hhhccccccceeeEeeccccccccccchhhhccCcccccccccccCce
Confidence 5667777776666542211 111222235555555543211000 0 0000000124799
Q ss_pred eEEeccccccccc---hhhhhhccceEEeeccCccceeecCCCCCccccccccEEeeccccCCccc--cccccCCCccEE
Q 045686 698 RLTIESSELLSLE---LGLMLSHLEILRIKCGFMKRLNIDQGLNNRPSFSALRRLSIILCPDIQNL--TCLVHVPSLQFL 772 (885)
Q Consensus 698 ~L~l~~~~~~~~~---l~~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~l--~~l~~l~~L~~L 772 (885)
.|++++|.+.... +..+ ++|+.|+++.|.+..++...+. .+++|+.|++++| .++.+ ..++.+++|+.|
T Consensus 279 ~L~l~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~----~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L 352 (455)
T 3v47_A 279 TCDLSKSKIFALLKSVFSHF-TDLEQLTLAQNEINKIDDNAFW----GLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVL 352 (455)
T ss_dssp EEECCSSCCCEECTTTTTTC-TTCCEEECTTSCCCEECTTTTT----TCTTCCEEECCSS-CCCEECGGGGTTCTTCCEE
T ss_pred EEEecCccccccchhhcccC-CCCCEEECCCCcccccChhHhc----CcccCCEEECCCC-ccCCcChhHhcCcccCCEE
Confidence 9999999854432 3343 8999999999999887654443 4899999999999 67665 357889999999
Q ss_pred eEeccCCchhhhcccccCCCcccccccccceeccccccccccccC-CccCCCCccEEeeccCCCCCCcC
Q 045686 773 SLSNCHSLEEIVGTYASGSSESRNYFSNLMAVDLDGLPTLRSICS-GTVAFPSLQTLSITGCPSLKKLP 840 (885)
Q Consensus 773 ~L~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~p~L~~L~i~~C~~L~~lp 840 (885)
+|++|. +..++. ..+..+++|++|+++++ .+..++. .+..+++|+.|++++|+--...|
T Consensus 353 ~Ls~N~-l~~~~~-------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 353 DLSYNH-IRALGD-------QSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp ECCSSC-CCEECT-------TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ECCCCc-ccccCh-------hhccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 999995 444422 46778999999999996 4566655 45789999999999986544444
No 33
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.86 E-value=3e-21 Score=235.46 Aligned_cols=138 Identities=22% Similarity=0.182 Sum_probs=116.1
Q ss_pred cCcCCccceEEEecccCcccccccccCCCCchhHHHHHhhcC-CccCCCCchhhhcCCcccEEecCCCCCCCcC-chhhh
Q 045686 507 NSFDGWHEAVRLSLWGSSIDFLALVEAPSCPQVRTLLARLTM-LHTLPIPSRFFDSMDALEVLDLSYNLDLNQL-PEEIG 584 (885)
Q Consensus 507 ~~~~~~~~~~~l~l~~~~i~~~~~~~~~~~~~Lr~L~l~~~~-l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~l-p~~i~ 584 (885)
|. ..+++++|++++|.++......+..+++|++|++++|. ... +++..|.++++|++|+|++| .+..+ |..++
T Consensus 20 P~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~--i~~~~f~~L~~L~~L~Ls~N-~l~~~~p~~~~ 94 (844)
T 3j0a_A 20 PQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLT--IDKEAFRNLPNLRILDLGSS-KIYFLHPDAFQ 94 (844)
T ss_dssp CS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCE--ECTTTTSSCTTCCEEECTTC-CCCEECTTSSC
T ss_pred CC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccc--cCHHHhcCCCCCCEEECCCC-cCcccCHhHcc
Confidence 66 55789999999999988656678999999999999994 444 66666999999999999999 66654 88999
Q ss_pred cccccceeeccCCcccc-cChh--hhccccccEeecCCccccccc-CCcccccCcccceecccccccccc
Q 045686 585 RLKNLHHLNLSNTSIGC-LPTA--IKRLIKLKVLLLDGIQCHLSI-PEGVISSLSSLQVFSCFSTELVEL 650 (885)
Q Consensus 585 ~L~~L~~L~Ls~~~i~~-lp~~--i~~L~~L~~L~l~~~~~l~~l-p~~~i~~L~~L~~L~l~~~~~~~~ 650 (885)
++++|++|+|++|.+.. +|.. ++++++|++|++++|. +..+ |...+++|++|++|++++|.+.+.
T Consensus 95 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~ 163 (844)
T 3j0a_A 95 GLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQIFLV 163 (844)
T ss_dssp SCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSCCCCC
T ss_pred CCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCcCCee
Confidence 99999999999999865 5665 8999999999999997 4444 333489999999999999988653
No 34
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.86 E-value=1.1e-21 Score=212.30 Aligned_cols=291 Identities=14% Similarity=0.133 Sum_probs=181.8
Q ss_pred ceEEEecccCcccccccccCCCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcC-chhhhccccccee
Q 045686 514 EAVRLSLWGSSIDFLALVEAPSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQL-PEEIGRLKNLHHL 592 (885)
Q Consensus 514 ~~~~l~l~~~~i~~~~~~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~l-p~~i~~L~~L~~L 592 (885)
+++.+++.++.+.. +|.. -.++|++|++++|.++. ++...|.++++|++|+|++| .++.+ |..++++++|++|
T Consensus 32 ~l~~l~~~~~~l~~--lp~~-~~~~l~~L~L~~n~i~~--~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 105 (330)
T 1xku_A 32 HLRVVQCSDLGLEK--VPKD-LPPDTALLDLQNNKITE--IKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERL 105 (330)
T ss_dssp ETTEEECTTSCCCS--CCCS-CCTTCCEEECCSSCCCC--BCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEE
T ss_pred CCeEEEecCCCccc--cCcc-CCCCCeEEECCCCcCCE--eChhhhccCCCCCEEECCCC-cCCeeCHHHhcCCCCCCEE
Confidence 46677777777665 3321 23678888888888887 77766888889999999888 66655 7788888899999
Q ss_pred eccCCcccccChhhhccccccEeecCCcccccccCCcccccCcccceecccccccccccCcccccccchhhhcCccCCcc
Q 045686 593 NLSNTSIGCLPTAIKRLIKLKVLLLDGIQCHLSIPEGVISSLSSLQVFSCFSTELVELIDPLFNETAILDELNCLEHLND 672 (885)
Q Consensus 593 ~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~ 672 (885)
++++|.+..+|..+. ++|++|++++|. +..++...+.++++|++|++++|.+.. .......+..+++|+.
T Consensus 106 ~Ls~n~l~~l~~~~~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~-------~~~~~~~~~~l~~L~~ 175 (330)
T 1xku_A 106 YLSKNQLKELPEKMP--KTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKS-------SGIENGAFQGMKKLSY 175 (330)
T ss_dssp ECCSSCCSBCCSSCC--TTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCG-------GGBCTTGGGGCTTCCE
T ss_pred ECCCCcCCccChhhc--ccccEEECCCCc-ccccCHhHhcCCccccEEECCCCcCCc-------cCcChhhccCCCCcCE
Confidence 999888888887654 788899998886 667776667888889999988887643 1123345566677777
Q ss_pred eeEEEechhhHHhhhCCCcccccceeEEeccccccccc---hhhhhhccceEEeeccCccceeecCCCCCccccccccEE
Q 045686 673 LSLTLFSTEAVDKLLNSPKLQRCIRRLTIESSELLSLE---LGLMLSHLEILRIKCGFMKRLNIDQGLNNRPSFSALRRL 749 (885)
Q Consensus 673 L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~---l~~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~l~~L~~L 749 (885)
|++..+....++.. ..++|+.|++++|.+.... +..+ ++|+.|+++.|.++.++.... ..+++|+.|
T Consensus 176 L~l~~n~l~~l~~~-----~~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~----~~l~~L~~L 245 (330)
T 1xku_A 176 IRIADTNITTIPQG-----LPPSLTELHLDGNKITKVDAASLKGL-NNLAKLGLSFNSISAVDNGSL----ANTPHLREL 245 (330)
T ss_dssp EECCSSCCCSCCSS-----CCTTCSEEECTTSCCCEECTGGGTTC-TTCCEEECCSSCCCEECTTTG----GGSTTCCEE
T ss_pred EECCCCccccCCcc-----ccccCCEEECCCCcCCccCHHHhcCC-CCCCEEECCCCcCceeChhhc----cCCCCCCEE
Confidence 77665443322211 1136777777777644332 2233 667777776666666544322 236677777
Q ss_pred eeccccCCcccc-ccccCCCccEEeEeccCCchhhhcccccCCCcccccccccceeccccccccc--cccCCccCCCCcc
Q 045686 750 SIILCPDIQNLT-CLVHVPSLQFLSLSNCHSLEEIVGTYASGSSESRNYFSNLMAVDLDGLPTLR--SICSGTVAFPSLQ 826 (885)
Q Consensus 750 ~L~~c~~l~~l~-~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~--~~~~~~~~~p~L~ 826 (885)
++++| .++.+| .+..+++|++|++++|. ++.++...... ......++.|+.|++.+++... ..+..+..+++|+
T Consensus 246 ~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~-i~~~~~~~f~~-~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~ 322 (330)
T 1xku_A 246 HLNNN-KLVKVPGGLADHKYIQVVYLHNNN-ISAIGSNDFCP-PGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRA 322 (330)
T ss_dssp ECCSS-CCSSCCTTTTTCSSCCEEECCSSC-CCCCCTTSSSC-SSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGG
T ss_pred ECCCC-cCccCChhhccCCCcCEEECCCCc-CCccChhhcCC-cccccccccccceEeecCcccccccCcccccccccee
Confidence 77777 455554 46667777777777763 44443211000 0011224566667776655321 1122344455666
Q ss_pred EEeeccC
Q 045686 827 TLSITGC 833 (885)
Q Consensus 827 ~L~i~~C 833 (885)
.++++++
T Consensus 323 ~l~L~~N 329 (330)
T 1xku_A 323 AVQLGNY 329 (330)
T ss_dssp GEEC---
T ss_pred EEEeccc
Confidence 6666553
No 35
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.86 E-value=1.6e-21 Score=228.26 Aligned_cols=132 Identities=23% Similarity=0.246 Sum_probs=85.0
Q ss_pred cceEEEecccCcccccccccCCCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCc-hhhhcccccce
Q 045686 513 HEAVRLSLWGSSIDFLALVEAPSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLP-EEIGRLKNLHH 591 (885)
Q Consensus 513 ~~~~~l~l~~~~i~~~~~~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp-~~i~~L~~L~~ 591 (885)
+++++|++++|.++......+..+++|++|++++|.+.. +++..|.++++|++|+|++| .++.+| ..++++++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~--i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~ 104 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT--IEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQK 104 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCE--ECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCE
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCc--cCcccccCchhCCEEeCcCC-cCCccCHhhhcCcccccc
Confidence 456777777777666433456667777777777776666 66555667777777777777 555443 55666777777
Q ss_pred eeccCCcccccCh-hhhccccccEeecCCcccccc--cCCcccccCcccceeccccccccc
Q 045686 592 LNLSNTSIGCLPT-AIKRLIKLKVLLLDGIQCHLS--IPEGVISSLSSLQVFSCFSTELVE 649 (885)
Q Consensus 592 L~Ls~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~--lp~~~i~~L~~L~~L~l~~~~~~~ 649 (885)
|++++|++..+|. .++++++|++|++++|. +.. +|.. ++++++|++|++++|.+.+
T Consensus 105 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~-~~~l~~L~~L~l~~n~l~~ 163 (570)
T 2z63_A 105 LVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEY-FSNLTNLEHLDLSSNKIQS 163 (570)
T ss_dssp EECTTSCCCCSTTCSCTTCTTCCEEECCSSC-CCCCCCCGG-GGGCTTCCEEECTTSCCCE
T ss_pred ccccccccccCCCccccccccccEEecCCCc-cceecChhh-hcccCCCCEEeCcCCccce
Confidence 7777776666654 36666777777777665 332 4554 6666677777666665543
No 36
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.86 E-value=3.4e-21 Score=230.32 Aligned_cols=133 Identities=20% Similarity=0.215 Sum_probs=116.1
Q ss_pred cceEEEecccCcccccccccCCCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCch-hhhcccccce
Q 045686 513 HEAVRLSLWGSSIDFLALVEAPSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPE-EIGRLKNLHH 591 (885)
Q Consensus 513 ~~~~~l~l~~~~i~~~~~~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~-~i~~L~~L~~ 591 (885)
+++++|++++|.+.......+.++++|++|++++|.+.. +++..|.++++|++|+|++| .++.+|. .++++++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~ 101 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK--LEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTE 101 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCC--CCTTHHHHCTTCCEEECCSS-CCCCCCTTTTTTCTTCSE
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCc--cCHHHHhcccCcCEEECCCC-ccCccChhhhccCCCCCE
Confidence 689999999999988544557889999999999999988 87777999999999999999 8888887 5999999999
Q ss_pred eeccCCcccccC-hhhhccccccEeecCCcccccccCCcccccCcccceeccccccccc
Q 045686 592 LNLSNTSIGCLP-TAIKRLIKLKVLLLDGIQCHLSIPEGVISSLSSLQVFSCFSTELVE 649 (885)
Q Consensus 592 L~Ls~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~ 649 (885)
|++++|++..+| ..++++++|++|++++|. +..++...++++++|++|++++|.+.+
T Consensus 102 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~ 159 (680)
T 1ziw_A 102 LHLMSNSIQKIKNNPFVKQKNLITLDLSHNG-LSSTKLGTQVQLENLQELLLSNNKIQA 159 (680)
T ss_dssp EECCSSCCCCCCSCTTTTCTTCCEEECCSSC-CSCCCCCSSSCCTTCCEEECCSSCCCC
T ss_pred EECCCCccCccChhHccccCCCCEEECCCCc-ccccCchhhcccccCCEEEccCCcccc
Confidence 999999998887 469999999999999997 555554448899999999999998765
No 37
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.86 E-value=9e-22 Score=212.01 Aligned_cols=221 Identities=20% Similarity=0.285 Sum_probs=169.2
Q ss_pred CchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCchhhhcccccceeeccCCcccccChhhhccccccEe
Q 045686 536 CPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPEEIGRLKNLHHLNLSNTSIGCLPTAIKRLIKLKVL 615 (885)
Q Consensus 536 ~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L 615 (885)
.++++.|++++|.+.. +|.. +..+++|++|+|++| .+..+|..++++++|++|++++|.+..+|..++++++|++|
T Consensus 80 ~~~l~~L~L~~n~l~~--lp~~-l~~l~~L~~L~L~~n-~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQ--FPDQ-AFRLSHLQHMTIDAA-GLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLREL 155 (328)
T ss_dssp STTCCEEEEESSCCSS--CCSC-GGGGTTCSEEEEESS-CCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEE
T ss_pred ccceeEEEccCCCchh--cChh-hhhCCCCCEEECCCC-CccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEE
Confidence 3566777777777776 8877 566999999999999 78899999999999999999999999999999999999999
Q ss_pred ecCCcccccccCCcccc---------cCcccceecccccccccccCcccccccchhhhcCccCCcceeEEEechhhHHhh
Q 045686 616 LLDGIQCHLSIPEGVIS---------SLSSLQVFSCFSTELVELIDPLFNETAILDELNCLEHLNDLSLTLFSTEAVDKL 686 (885)
Q Consensus 616 ~l~~~~~l~~lp~~~i~---------~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~~~~l 686 (885)
++++|..+..+|.. +. ++++|++|++++|.+.. ....+..+
T Consensus 156 ~L~~n~~~~~~p~~-~~~~~~~~~~~~l~~L~~L~L~~n~l~~----------lp~~l~~l------------------- 205 (328)
T 4fcg_A 156 SIRACPELTELPEP-LASTDASGEHQGLVNLQSLRLEWTGIRS----------LPASIANL------------------- 205 (328)
T ss_dssp EEEEETTCCCCCSC-SEEEC-CCCEEESTTCCEEEEEEECCCC----------CCGGGGGC-------------------
T ss_pred ECCCCCCccccChh-HhhccchhhhccCCCCCEEECcCCCcCc----------chHhhcCC-------------------
Confidence 99999888889886 54 49999999999887642 11122222
Q ss_pred hCCCcccccceeEEeccccccccchhhhhhccceEEeeccCccceeecCCCCCccccccccEEeeccccCCcccc-cccc
Q 045686 687 LNSPKLQRCIRRLTIESSELLSLELGLMLSHLEILRIKCGFMKRLNIDQGLNNRPSFSALRRLSIILCPDIQNLT-CLVH 765 (885)
Q Consensus 687 ~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~-~l~~ 765 (885)
++|+.|+++.|.+..++.... .+++|+.|++++|.....+| .++.
T Consensus 206 -----------------------------~~L~~L~L~~N~l~~l~~~l~-----~l~~L~~L~Ls~n~~~~~~p~~~~~ 251 (328)
T 4fcg_A 206 -----------------------------QNLKSLKIRNSPLSALGPAIH-----HLPKLEELDLRGCTALRNYPPIFGG 251 (328)
T ss_dssp -----------------------------TTCCEEEEESSCCCCCCGGGG-----GCTTCCEEECTTCTTCCBCCCCTTC
T ss_pred -----------------------------CCCCEEEccCCCCCcCchhhc-----cCCCCCEEECcCCcchhhhHHHhcC
Confidence 344444444444444433222 36788888888876555554 5778
Q ss_pred CCCccEEeEeccCCchhhhcccccCCCcccccccccceeccccccccccccCCccCCCCccEEeecc
Q 045686 766 VPSLQFLSLSNCHSLEEIVGTYASGSSESRNYFSNLMAVDLDGLPTLRSICSGTVAFPSLQTLSITG 832 (885)
Q Consensus 766 l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~p~L~~L~i~~ 832 (885)
+++|++|+|++|..+..++. .+..+++|++|+|++|+.+..+|..+..+++|+.+.+..
T Consensus 252 l~~L~~L~L~~n~~~~~~p~--------~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 252 RAPLKRLILKDCSNLLTLPL--------DIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp CCCCCEEECTTCTTCCBCCT--------TGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred CCCCCEEECCCCCchhhcch--------hhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 88888888888876665543 567788888888888888888888888888888888765
No 38
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.85 E-value=4.2e-22 Score=240.35 Aligned_cols=317 Identities=19% Similarity=0.206 Sum_probs=130.6
Q ss_pred CCccceEEEecccCcccccccccCCCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCC-cCchhhhcc-c
Q 045686 510 DGWHEAVRLSLWGSSIDFLALVEAPSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLN-QLPEEIGRL-K 587 (885)
Q Consensus 510 ~~~~~~~~l~l~~~~i~~~~~~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~-~lp~~i~~L-~ 587 (885)
..+++++.|++.+|.+.......+..+++|++|++++|.+.. .+|. . .+++|++|++++| .+. .+|..++.+ +
T Consensus 220 ~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~--~-~l~~L~~L~L~~n-~l~~~ip~~~~~~~~ 294 (768)
T 3rgz_A 220 GDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVG-PIPP--L-PLKSLQYLSLAEN-KFTGEIPDFLSGACD 294 (768)
T ss_dssp TTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEE-SCCC--C-CCTTCCEEECCSS-EEEESCCCCSCTTCT
T ss_pred ccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccC-ccCc--c-ccCCCCEEECcCC-ccCCccCHHHHhhcC
Confidence 333444444444444432222233344444444444443332 0111 1 3344444444444 222 444444332 4
Q ss_pred ccceeeccCCccc-ccChhhhccccccEeecCCcccccccCCcccccCcccceecccccccccccCcccccccchhhhcC
Q 045686 588 NLHHLNLSNTSIG-CLPTAIKRLIKLKVLLLDGIQCHLSIPEGVISSLSSLQVFSCFSTELVELIDPLFNETAILDELNC 666 (885)
Q Consensus 588 ~L~~L~Ls~~~i~-~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~ 666 (885)
+|++|++++|.+. .+|..++++++|++|++++|.....+|...+.++++|++|++++|.+.+.+| ..+..
T Consensus 295 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p---------~~l~~ 365 (768)
T 3rgz_A 295 TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELP---------ESLTN 365 (768)
T ss_dssp TCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCC---------TTHHH
T ss_pred cCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCcccc---------HHHHh
Confidence 4555555555442 4444455555555555555542224444334445555555555554433221 11222
Q ss_pred cc-CCcceeEEEechh--hHHhhhCCCcccccceeEEeccccccc-c--chhhhhhccceEEeeccCccceeecCCCCCc
Q 045686 667 LE-HLNDLSLTLFSTE--AVDKLLNSPKLQRCIRRLTIESSELLS-L--ELGLMLSHLEILRIKCGFMKRLNIDQGLNNR 740 (885)
Q Consensus 667 L~-~L~~L~l~~~~~~--~~~~l~~~~~~~~~L~~L~l~~~~~~~-~--~l~~~~~~L~~L~l~~~~l~~l~~~~~~~~~ 740 (885)
+. +|+.|+++.+... ....+.. ...++|+.|++++|.+.. . .+..+ ++|+.|+++.|.+....+...
T Consensus 366 l~~~L~~L~Ls~N~l~~~~~~~~~~--~~~~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~Ls~N~l~~~~p~~l---- 438 (768)
T 3rgz_A 366 LSASLLTLDLSSNNFSGPILPNLCQ--NPKNTLQELYLQNNGFTGKIPPTLSNC-SELVSLHLSFNYLSGTIPSSL---- 438 (768)
T ss_dssp HTTTCSEEECCSSEEEEECCTTTTC--STTCCCCEEECCSSEEEEECCGGGGGC-TTCCEEECCSSEEESCCCGGG----
T ss_pred hhcCCcEEEccCCCcCCCcChhhhh--cccCCccEEECCCCccccccCHHHhcC-CCCCEEECcCCcccCcccHHH----
Confidence 22 3333333322111 0000000 001245555555555221 1 12222 555555555444442221111
Q ss_pred cccccccEEeeccccCCcccc-ccccCCCccEEeEeccCCchhhhcccccCCCcccccccccceeccccccccccccCCc
Q 045686 741 PSFSALRRLSIILCPDIQNLT-CLVHVPSLQFLSLSNCHSLEEIVGTYASGSSESRNYFSNLMAVDLDGLPTLRSICSGT 819 (885)
Q Consensus 741 ~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 819 (885)
..+++|+.|++++|.....+| .++.+++|+.|++++|.....++ ..+..+++|+.|++++|.....++..+
T Consensus 439 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p--------~~l~~l~~L~~L~L~~N~l~~~~p~~~ 510 (768)
T 3rgz_A 439 GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIP--------SGLSNCTNLNWISLSNNRLTGEIPKWI 510 (768)
T ss_dssp GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCC--------GGGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred hcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCC--------HHHhcCCCCCEEEccCCccCCcCChHH
Confidence 124555555555552221222 34455555555555553222221 234455555555555554444445455
Q ss_pred cCCCCccEEeeccCCCCCCcCCCCccccCCceEEEcc
Q 045686 820 VAFPSLQTLSITGCPSLKKLPFNSESARRSLISVRAS 856 (885)
Q Consensus 820 ~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~i~~~ 856 (885)
+.+++|+.|++++|.-...+|... ..+.+|+.++..
T Consensus 511 ~~l~~L~~L~L~~N~l~~~~p~~l-~~l~~L~~L~Ls 546 (768)
T 3rgz_A 511 GRLENLAILKLSNNSFSGNIPAEL-GDCRSLIWLDLN 546 (768)
T ss_dssp GGCTTCCEEECCSSCCEEECCGGG-GGCTTCCEEECC
T ss_pred hcCCCCCEEECCCCcccCcCCHHH-cCCCCCCEEECC
Confidence 555555555555543333444322 233444444443
No 39
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.85 E-value=4e-21 Score=221.94 Aligned_cols=124 Identities=17% Similarity=0.110 Sum_probs=107.9
Q ss_pred EEEecccCcccccccccCCCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcC-chhhhcccccceeec
Q 045686 516 VRLSLWGSSIDFLALVEAPSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQL-PEEIGRLKNLHHLNL 594 (885)
Q Consensus 516 ~~l~l~~~~i~~~~~~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~l-p~~i~~L~~L~~L~L 594 (885)
+.+++++|.++. +|.... ++|++|++++|.+.. +++..|.++++|++|+|++| .++.+ |..++++++|++|++
T Consensus 3 ~~l~ls~n~l~~--ip~~~~-~~L~~L~Ls~n~i~~--~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L 76 (520)
T 2z7x_B 3 FLVDRSKNGLIH--VPKDLS-QKTTILNISQNYISE--LWTSDILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDL 76 (520)
T ss_dssp CEEECTTSCCSS--CCCSCC-TTCSEEECCSSCCCC--CCHHHHTTCTTCCEEECCSS-CCCEEEGGGGTTCTTCCEEEC
T ss_pred ceEecCCCCccc--cccccc-ccccEEECCCCcccc--cChhhccccccccEEecCCC-ccCCcChHHhhcccCCCEEec
Confidence 578889998887 444222 899999999999988 88777999999999999999 77766 788999999999999
Q ss_pred cCCcccccChhhhccccccEeecCCcccccc--cCCcccccCcccceeccccccccc
Q 045686 595 SNTSIGCLPTAIKRLIKLKVLLLDGIQCHLS--IPEGVISSLSSLQVFSCFSTELVE 649 (885)
Q Consensus 595 s~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~--lp~~~i~~L~~L~~L~l~~~~~~~ 649 (885)
++|++..+|.. .+++|++|++++|. +.. +|.. ++++++|++|++++|.+.+
T Consensus 77 s~N~l~~lp~~--~l~~L~~L~L~~N~-l~~~~~p~~-~~~l~~L~~L~L~~n~l~~ 129 (520)
T 2z7x_B 77 SHNKLVKISCH--PTVNLKHLDLSFNA-FDALPICKE-FGNMSQLKFLGLSTTHLEK 129 (520)
T ss_dssp CSSCCCEEECC--CCCCCSEEECCSSC-CSSCCCCGG-GGGCTTCCEEEEEESSCCG
T ss_pred CCCceeecCcc--ccCCccEEeccCCc-cccccchhh-hccCCcceEEEecCcccch
Confidence 99999999987 89999999999997 554 5566 9999999999999998764
No 40
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.84 E-value=1e-20 Score=224.50 Aligned_cols=133 Identities=23% Similarity=0.240 Sum_probs=117.3
Q ss_pred cceEEEecccCcccccccccCCCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCch-hhhcccccce
Q 045686 513 HEAVRLSLWGSSIDFLALVEAPSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPE-EIGRLKNLHH 591 (885)
Q Consensus 513 ~~~~~l~l~~~~i~~~~~~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~-~i~~L~~L~~ 591 (885)
.++++|++++|.++......+.++++|++|++++|.++. ++++.|.++++|++|+|++| .++.+|. .+++|++|++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~--i~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~f~~L~~L~~ 128 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT--IEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQK 128 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE--ECTTTTTTCTTCCEEECTTC-CCCEECGGGGTTCTTCCE
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCC--cChhHhcCCCCCCEEEccCC-cCCCCCHHHhcCCCCCCE
Confidence 479999999999998555568899999999999999998 98888999999999999999 8888875 5799999999
Q ss_pred eeccCCcccccChh-hhccccccEeecCCcccccc--cCCcccccCcccceecccccccccc
Q 045686 592 LNLSNTSIGCLPTA-IKRLIKLKVLLLDGIQCHLS--IPEGVISSLSSLQVFSCFSTELVEL 650 (885)
Q Consensus 592 L~Ls~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~--lp~~~i~~L~~L~~L~l~~~~~~~~ 650 (885)
|++++|++..+|.. ++++++|++|++++|. +.. +|.. ++.+++|++|++++|.+.+.
T Consensus 129 L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~-~~~l~~L~~L~L~~N~l~~~ 188 (635)
T 4g8a_A 129 LVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEY-FSNLTNLEHLDLSSNKIQSI 188 (635)
T ss_dssp EECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGG-GGGCTTCCEEECCSSCCCEE
T ss_pred EECCCCcCCCCChhhhhcCcccCeeccccCc-cccCCCchh-hccchhhhhhcccCcccccc
Confidence 99999999999875 8999999999999997 544 4554 88999999999999987653
No 41
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.84 E-value=2e-21 Score=234.37 Aligned_cols=304 Identities=21% Similarity=0.167 Sum_probs=232.0
Q ss_pred CcCCccceEEEecccCcccccccccCCCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCchhhhccc
Q 045686 508 SFDGWHEAVRLSLWGSSIDFLALVEAPSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPEEIGRLK 587 (885)
Q Consensus 508 ~~~~~~~~~~l~l~~~~i~~~~~~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~ 587 (885)
.+..+++++.|++.+|.+... .+. ..+++|++|++++|.+.. .+|..++..+++|++|+|++|.....+|..+++++
T Consensus 242 ~l~~l~~L~~L~Ls~n~l~~~-~~~-~~l~~L~~L~L~~n~l~~-~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~ 318 (768)
T 3rgz_A 242 AISTCTELKLLNISSNQFVGP-IPP-LPLKSLQYLSLAENKFTG-EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 318 (768)
T ss_dssp HTTTCSSCCEEECCSSCCEES-CCC-CCCTTCCEEECCSSEEEE-SCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCT
T ss_pred HHhcCCCCCEEECCCCcccCc-cCc-cccCCCCEEECcCCccCC-ccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCC
Confidence 356677899999999988752 333 388999999999998862 27777555569999999999944447899999999
Q ss_pred ccceeeccCCccc-ccChh-hhccccccEeecCCcccccccCCcccccCc-ccceecccccccccccCcccccccchhhh
Q 045686 588 NLHHLNLSNTSIG-CLPTA-IKRLIKLKVLLLDGIQCHLSIPEGVISSLS-SLQVFSCFSTELVELIDPLFNETAILDEL 664 (885)
Q Consensus 588 ~L~~L~Ls~~~i~-~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~-~L~~L~l~~~~~~~~~~~~~~~~~~l~~l 664 (885)
+|++|++++|.+. .+|.. +.++++|++|++++|.....+|.. +.+++ +|++|++++|.+.+.++. .+
T Consensus 319 ~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~~L~~L~Ls~N~l~~~~~~---------~~ 388 (768)
T 3rgz_A 319 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES-LTNLSASLLTLDLSSNNFSGPILP---------NL 388 (768)
T ss_dssp TCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTT-HHHHTTTCSEEECCSSEEEEECCT---------TT
T ss_pred CccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHH-HHhhhcCCcEEEccCCCcCCCcCh---------hh
Confidence 9999999999986 89987 999999999999999855588887 78887 999999999998764332 22
Q ss_pred cC--ccCCcceeEEEechh-hH-HhhhCCCcccccceeEEecccccccc---chhhhhhccceEEeeccCccceeecCCC
Q 045686 665 NC--LEHLNDLSLTLFSTE-AV-DKLLNSPKLQRCIRRLTIESSELLSL---ELGLMLSHLEILRIKCGFMKRLNIDQGL 737 (885)
Q Consensus 665 ~~--L~~L~~L~l~~~~~~-~~-~~l~~~~~~~~~L~~L~l~~~~~~~~---~l~~~~~~L~~L~l~~~~l~~l~~~~~~ 737 (885)
.. +++|+.|++..+... .+ ..+. ..++|+.|++++|.+... .+..+ ++|+.|+++.|.+....+...
T Consensus 389 ~~~~~~~L~~L~L~~n~l~~~~p~~l~----~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~L~~n~l~~~~p~~~- 462 (768)
T 3rgz_A 389 CQNPKNTLQELYLQNNGFTGKIPPTLS----NCSELVSLHLSFNYLSGTIPSSLGSL-SKLRDLKLWLNMLEGEIPQEL- 462 (768)
T ss_dssp TCSTTCCCCEEECCSSEEEEECCGGGG----GCTTCCEEECCSSEEESCCCGGGGGC-TTCCEEECCSSCCCSCCCGGG-
T ss_pred hhcccCCccEEECCCCccccccCHHHh----cCCCCCEEECcCCcccCcccHHHhcC-CCCCEEECCCCcccCcCCHHH-
Confidence 22 567777777654332 11 1222 234799999999984322 24444 899999998887774332222
Q ss_pred CCccccccccEEeeccccCCc-ccc-ccccCCCccEEeEeccCCchhhhcccccCCCcccccccccceeccccccccccc
Q 045686 738 NNRPSFSALRRLSIILCPDIQ-NLT-CLVHVPSLQFLSLSNCHSLEEIVGTYASGSSESRNYFSNLMAVDLDGLPTLRSI 815 (885)
Q Consensus 738 ~~~~~l~~L~~L~L~~c~~l~-~l~-~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 815 (885)
..+++|+.|++++| .++ .+| .++.+++|+.|+|++|.....++ ..++.+++|++|+|++|.....+
T Consensus 463 ---~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p--------~~~~~l~~L~~L~L~~N~l~~~~ 530 (768)
T 3rgz_A 463 ---MYVKTLETLILDFN-DLTGEIPSGLSNCTNLNWISLSNNRLTGEIP--------KWIGRLENLAILKLSNNSFSGNI 530 (768)
T ss_dssp ---GGCTTCCEEECCSS-CCCSCCCGGGGGCTTCCEEECCSSCCCSCCC--------GGGGGCTTCCEEECCSSCCEEEC
T ss_pred ---cCCCCceEEEecCC-cccCcCCHHHhcCCCCCEEEccCCccCCcCC--------hHHhcCCCCCEEECCCCcccCcC
Confidence 24789999999999 454 443 68899999999999996443443 36778999999999998877788
Q ss_pred cCCccCCCCccEEeeccCCCCCCcCCC
Q 045686 816 CSGTVAFPSLQTLSITGCPSLKKLPFN 842 (885)
Q Consensus 816 ~~~~~~~p~L~~L~i~~C~~L~~lp~~ 842 (885)
+..+..+++|+.|++++|+-...+|..
T Consensus 531 p~~l~~l~~L~~L~Ls~N~l~g~ip~~ 557 (768)
T 3rgz_A 531 PAELGDCRSLIWLDLNTNLFNGTIPAA 557 (768)
T ss_dssp CGGGGGCTTCCEEECCSSEEESBCCGG
T ss_pred CHHHcCCCCCCEEECCCCccCCcCChH
Confidence 888899999999999998766677754
No 42
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.84 E-value=4.3e-21 Score=223.40 Aligned_cols=311 Identities=19% Similarity=0.161 Sum_probs=207.7
Q ss_pred CcCCccceEEEecccCcccccccccCCCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCc--Cchhhhc
Q 045686 508 SFDGWHEAVRLSLWGSSIDFLALVEAPSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQ--LPEEIGR 585 (885)
Q Consensus 508 ~~~~~~~~~~l~l~~~~i~~~~~~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~--lp~~i~~ 585 (885)
.+..++++++|++++|.+.......+..+++|++|++++|.+.. +++..|+++++|++|+|++| .++. .|..+++
T Consensus 45 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~ 121 (549)
T 2z81_A 45 DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSS--LSSSWFGPLSSLKYLNLMGN-PYQTLGVTSLFPN 121 (549)
T ss_dssp TTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCS--CCHHHHTTCTTCCEEECTTC-CCSSSCSSCSCTT
T ss_pred hhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCc--cCHHHhccCCCCcEEECCCC-cccccchhhhhhc
Confidence 45667889999999998887544567888999999999998888 88877889999999999999 6764 4677888
Q ss_pred ccccceeeccCCc-ccccCh-hhhccccccEeecCCcccccccCCccccc------------------------Ccccce
Q 045686 586 LKNLHHLNLSNTS-IGCLPT-AIKRLIKLKVLLLDGIQCHLSIPEGVISS------------------------LSSLQV 639 (885)
Q Consensus 586 L~~L~~L~Ls~~~-i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~~------------------------L~~L~~ 639 (885)
+++|++|++++|. +..+|. .+.++++|++|++++|......|.. +++ +++|++
T Consensus 122 l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 200 (549)
T 2z81_A 122 LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS-LKSIRDIHHLTLHLSESAFLLEIFADILSSVRY 200 (549)
T ss_dssp CTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT-TTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSE
T ss_pred cCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh-hhccccCceEecccCcccccchhhHhhcccccE
Confidence 9999999999886 677764 5888888888888888643334443 443 455666
Q ss_pred eccccccccccc--Cccc-----------------------------------------------------------ccc
Q 045686 640 FSCFSTELVELI--DPLF-----------------------------------------------------------NET 658 (885)
Q Consensus 640 L~l~~~~~~~~~--~~~~-----------------------------------------------------------~~~ 658 (885)
|++++|.+.+.. +... ...
T Consensus 201 L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l 280 (549)
T 2z81_A 201 LELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSEL 280 (549)
T ss_dssp EEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCC
T ss_pred EEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhh
Confidence 666666554310 0000 000
Q ss_pred c-------------------------------------------chhhh-cCccCCcceeEEEechhhH-HhhhCCCccc
Q 045686 659 A-------------------------------------------ILDEL-NCLEHLNDLSLTLFSTEAV-DKLLNSPKLQ 693 (885)
Q Consensus 659 ~-------------------------------------------~l~~l-~~L~~L~~L~l~~~~~~~~-~~l~~~~~~~ 693 (885)
. ....+ ..+++|+.|+++.+..... ..........
T Consensus 281 ~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l 360 (549)
T 2z81_A 281 GKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAW 360 (549)
T ss_dssp TTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSS
T ss_pred cccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhcc
Confidence 0 00011 3477888888876654331 1111111223
Q ss_pred ccceeEEeccccccccch----hhhhhccceEEeeccCccceeecCCCCCccccccccEEeeccccCCccccc-------
Q 045686 694 RCIRRLTIESSELLSLEL----GLMLSHLEILRIKCGFMKRLNIDQGLNNRPSFSALRRLSIILCPDIQNLTC------- 762 (885)
Q Consensus 694 ~~L~~L~l~~~~~~~~~l----~~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~------- 762 (885)
++|+.|++++|.+..++. ...+++|+.|+++.|.++.++..... +++|+.|++++| .++.++.
T Consensus 361 ~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~-----~~~L~~L~Ls~N-~l~~l~~~~~~~L~ 434 (549)
T 2z81_A 361 PSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQW-----PEKMRFLNLSST-GIRVVKTCIPQTLE 434 (549)
T ss_dssp TTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCC-----CTTCCEEECTTS-CCSCCCTTSCTTCS
T ss_pred ccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcc-----cccccEEECCCC-CcccccchhcCCce
Confidence 479999999998655431 22238899999988888877654332 455666666655 3433221
Q ss_pred ------------cccCCCccEEeEeccCCchhhhcccccCCCcccccccccceecccccccccccc-CCccCCCCccEEe
Q 045686 763 ------------LVHVPSLQFLSLSNCHSLEEIVGTYASGSSESRNYFSNLMAVDLDGLPTLRSIC-SGTVAFPSLQTLS 829 (885)
Q Consensus 763 ------------l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~p~L~~L~ 829 (885)
.+.+++|++|+|++| .++.++ ....+++|++|++++|. +..++ ..+..+++|+.|+
T Consensus 435 ~L~Ls~N~l~~~~~~l~~L~~L~Ls~N-~l~~ip---------~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~ 503 (549)
T 2z81_A 435 VLDVSNNNLDSFSLFLPRLQELYISRN-KLKTLP---------DASLFPVLLVMKISRNQ-LKSVPDGIFDRLTSLQKIW 503 (549)
T ss_dssp EEECCSSCCSCCCCCCTTCCEEECCSS-CCSSCC---------CGGGCTTCCEEECCSSC-CCCCCTTGGGGCTTCCEEE
T ss_pred EEECCCCChhhhcccCChhcEEECCCC-ccCcCC---------CcccCccCCEEecCCCc-cCCcCHHHHhcCcccCEEE
Confidence 236778888888887 445543 23568999999999974 55544 4478899999999
Q ss_pred eccCCCCCCc
Q 045686 830 ITGCPSLKKL 839 (885)
Q Consensus 830 i~~C~~L~~l 839 (885)
+++|+-....
T Consensus 504 l~~N~~~~~~ 513 (549)
T 2z81_A 504 LHTNPWDCSC 513 (549)
T ss_dssp CCSSCBCCCH
T ss_pred ecCCCccCCC
Confidence 9998754333
No 43
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.84 E-value=2.4e-21 Score=207.34 Aligned_cols=90 Identities=11% Similarity=0.029 Sum_probs=46.3
Q ss_pred cccccEEeeccccCCccccccccCCCccEEeEeccCCchhhhcccccCCCcccccccccceeccccccccccccCCccCC
Q 045686 743 FSALRRLSIILCPDIQNLTCLVHVPSLQFLSLSNCHSLEEIVGTYASGSSESRNYFSNLMAVDLDGLPTLRSICSGTVAF 822 (885)
Q Consensus 743 l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 822 (885)
+++|+.|++++|.....++.+..+++|++|++++|.....++ ..+..+++|++|++++|.....+|.. ..+
T Consensus 220 l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p--------~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l 290 (313)
T 1ogq_A 220 DKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLP--------QGLTQLKFLHSLNVSFNNLCGEIPQG-GNL 290 (313)
T ss_dssp TSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCC--------GGGGGCTTCCEEECCSSEEEEECCCS-TTG
T ss_pred CCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCC--------hHHhcCcCCCEEECcCCcccccCCCC-ccc
Confidence 555666666655322233445555666666666654222221 24455566666666665433344443 455
Q ss_pred CCccEEeeccCCCCCCcCC
Q 045686 823 PSLQTLSITGCPSLKKLPF 841 (885)
Q Consensus 823 p~L~~L~i~~C~~L~~lp~ 841 (885)
++|+.|++++++.+...|.
T Consensus 291 ~~L~~l~l~~N~~lc~~p~ 309 (313)
T 1ogq_A 291 QRFDVSAYANNKCLCGSPL 309 (313)
T ss_dssp GGSCGGGTCSSSEEESTTS
T ss_pred cccChHHhcCCCCccCCCC
Confidence 6666666666555554443
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.83 E-value=1.2e-20 Score=204.10 Aligned_cols=282 Identities=18% Similarity=0.213 Sum_probs=189.0
Q ss_pred hhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcC-chhhhcccccceeeccCCccccc-ChhhhccccccEe
Q 045686 538 QVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQL-PEEIGRLKNLHHLNLSNTSIGCL-PTAIKRLIKLKVL 615 (885)
Q Consensus 538 ~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~l-p~~i~~L~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L 615 (885)
+++.++++++.++. +|..+ .++|++|++++| .++.+ |..++++++|++|++++|.+..+ |..++++++|++|
T Consensus 34 ~l~~l~~~~~~l~~--ip~~~---~~~l~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 107 (332)
T 2ft3_A 34 HLRVVQCSDLGLKA--VPKEI---SPDTTLLDLQNN-DISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKL 107 (332)
T ss_dssp ETTEEECCSSCCSS--CCSCC---CTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEE
T ss_pred cCCEEECCCCCccc--cCCCC---CCCCeEEECCCC-cCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEE
Confidence 78899999999988 88764 378999999999 77776 45799999999999999999887 6679999999999
Q ss_pred ecCCcccccccCCcccccCcccceecccccccccccCcccccccchhhhcCccCCcceeEEEechhhHHhhhCCCccccc
Q 045686 616 LLDGIQCHLSIPEGVISSLSSLQVFSCFSTELVELIDPLFNETAILDELNCLEHLNDLSLTLFSTEAVDKLLNSPKLQRC 695 (885)
Q Consensus 616 ~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~ 695 (885)
++++|. +..+|.. +. ++|++|++++|.+.+. ....+..+++|+.|++..+............... +
T Consensus 108 ~L~~n~-l~~l~~~-~~--~~L~~L~l~~n~i~~~---------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~ 173 (332)
T 2ft3_A 108 YISKNH-LVEIPPN-LP--SSLVELRIHDNRIRKV---------PKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-K 173 (332)
T ss_dssp ECCSSC-CCSCCSS-CC--TTCCEEECCSSCCCCC---------CSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-C
T ss_pred ECCCCc-CCccCcc-cc--ccCCEEECCCCccCcc---------CHhHhCCCccCCEEECCCCccccCCCCcccccCC-c
Confidence 999997 7889987 33 8999999999988642 2234667788888887765443211111111111 5
Q ss_pred ceeEEeccccccccchhhhhhccceEEeeccCccceeecCCCCCccccccccEEeeccccCCcccc--ccccCCCccEEe
Q 045686 696 IRRLTIESSELLSLELGLMLSHLEILRIKCGFMKRLNIDQGLNNRPSFSALRRLSIILCPDIQNLT--CLVHVPSLQFLS 773 (885)
Q Consensus 696 L~~L~l~~~~~~~~~l~~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~ 773 (885)
|+.|++++|.+..++..-. ++|+.|+++.|.++.++...+. .+++|+.|++++| .++.++ .+..+++|+.|+
T Consensus 174 L~~L~l~~n~l~~l~~~~~-~~L~~L~l~~n~i~~~~~~~l~----~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~ 247 (332)
T 2ft3_A 174 LNYLRISEAKLTGIPKDLP-ETLNELHLDHNKIQAIELEDLL----RYSKLYRLGLGHN-QIRMIENGSLSFLPTLRELH 247 (332)
T ss_dssp CSCCBCCSSBCSSCCSSSC-SSCSCCBCCSSCCCCCCTTSST----TCTTCSCCBCCSS-CCCCCCTTGGGGCTTCCEEE
T ss_pred cCEEECcCCCCCccCcccc-CCCCEEECCCCcCCccCHHHhc----CCCCCCEEECCCC-cCCcCChhHhhCCCCCCEEE
Confidence 7777777777544432222 6777777777777665533322 3677777777777 455543 466777777777
Q ss_pred EeccCCchhhhcccccCCCcccccccccceeccccccccccccCC-cc------CCCCccEEeeccCCCCC-CcCCCCcc
Q 045686 774 LSNCHSLEEIVGTYASGSSESRNYFSNLMAVDLDGLPTLRSICSG-TV------AFPSLQTLSITGCPSLK-KLPFNSES 845 (885)
Q Consensus 774 L~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~------~~p~L~~L~i~~C~~L~-~lp~~~~~ 845 (885)
+++|. +..++. .+..+++|+.|++++++ +..++.. +. .+++|+.|+++++|... .++.....
T Consensus 248 L~~N~-l~~lp~--------~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~ 317 (332)
T 2ft3_A 248 LDNNK-LSRVPA--------GLPDLKLLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFR 317 (332)
T ss_dssp CCSSC-CCBCCT--------TGGGCTTCCEEECCSSC-CCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGT
T ss_pred CCCCc-CeecCh--------hhhcCccCCEEECCCCC-CCccChhHccccccccccccccceEeecCcccccccCccccc
Confidence 77773 444432 45667777777777753 4444321 11 14667777777765321 33333334
Q ss_pred ccCCceEEEc
Q 045686 846 ARRSLISVRA 855 (885)
Q Consensus 846 ~~~~l~~i~~ 855 (885)
...+++.+..
T Consensus 318 ~l~~L~~l~l 327 (332)
T 2ft3_A 318 CVTDRLAIQF 327 (332)
T ss_dssp TBCCSTTEEC
T ss_pred ccchhhhhhc
Confidence 4455555544
No 45
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.83 E-value=3.3e-20 Score=221.76 Aligned_cols=239 Identities=17% Similarity=0.204 Sum_probs=162.3
Q ss_pred EEecccCcccccccccCCCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcC-chhhhcccccceeecc
Q 045686 517 RLSLWGSSIDFLALVEAPSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQL-PEEIGRLKNLHHLNLS 595 (885)
Q Consensus 517 ~l~l~~~~i~~~~~~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~l-p~~i~~L~~L~~L~Ls 595 (885)
.++.+++.++. +|... .++|++|++++|.+.. ++...|.++++|++|+|++| .+..+ |..++++++|++|+++
T Consensus 8 ~~~cs~~~L~~--ip~~~-~~~l~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~ 81 (680)
T 1ziw_A 8 VADCSHLKLTQ--VPDDL-PTNITVLNLTHNQLRR--LPAANFTRYSQLTSLDVGFN-TISKLEPELCQKLPMLKVLNLQ 81 (680)
T ss_dssp EEECCSSCCSS--CCSCS-CTTCSEEECCSSCCCC--CCGGGGGGGTTCSEEECCSS-CCCCCCTTHHHHCTTCCEEECC
T ss_pred eeECCCCCccc--ccccc-CCCCcEEECCCCCCCC--cCHHHHhCCCcCcEEECCCC-ccCccCHHHHhcccCcCEEECC
Confidence 45556666665 44321 2789999999999988 88888999999999999999 56554 7789999999999999
Q ss_pred CCcccccChh-hhccccccEeecCCcccccccCCcccccCcccceecccccccccccCcccccccchhhhcCccCCccee
Q 045686 596 NTSIGCLPTA-IKRLIKLKVLLLDGIQCHLSIPEGVISSLSSLQVFSCFSTELVELIDPLFNETAILDELNCLEHLNDLS 674 (885)
Q Consensus 596 ~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~L~ 674 (885)
+|.+..+|.. ++++++|++|++++|. +..+|...++++++|++|++++|.+.+. ....+..+++|+.|+
T Consensus 82 ~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~---------~~~~~~~l~~L~~L~ 151 (680)
T 1ziw_A 82 HNELSQLSDKTFAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSST---------KLGTQVQLENLQELL 151 (680)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSSCCSCC---------CCCSSSCCTTCCEEE
T ss_pred CCccCccChhhhccCCCCCEEECCCCc-cCccChhHccccCCCCEEECCCCccccc---------CchhhcccccCCEEE
Confidence 9999999984 9999999999999997 6778765599999999999999988653 223455677777777
Q ss_pred EEEechhhHH--hhhCCCcccccceeEEeccccccccc---hhhh--------------------------hhccceEEe
Q 045686 675 LTLFSTEAVD--KLLNSPKLQRCIRRLTIESSELLSLE---LGLM--------------------------LSHLEILRI 723 (885)
Q Consensus 675 l~~~~~~~~~--~l~~~~~~~~~L~~L~l~~~~~~~~~---l~~~--------------------------~~~L~~L~l 723 (885)
+..+...... .+... ..++|+.|++++|.+.... +... .++|+.|++
T Consensus 152 L~~n~l~~~~~~~~~~~--~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L 229 (680)
T 1ziw_A 152 LSNNKIQALKSEELDIF--ANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSL 229 (680)
T ss_dssp CCSSCCCCBCHHHHGGG--TTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEEC
T ss_pred ccCCcccccCHHHhhcc--ccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEc
Confidence 7654322211 11100 1135777777766532221 1110 034555555
Q ss_pred eccCccceeecCCCCCcccc--ccccEEeeccccCCcccc--ccccCCCccEEeEeccC
Q 045686 724 KCGFMKRLNIDQGLNNRPSF--SALRRLSIILCPDIQNLT--CLVHVPSLQFLSLSNCH 778 (885)
Q Consensus 724 ~~~~l~~l~~~~~~~~~~~l--~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~~~ 778 (885)
+.+.+.......+. .+ ++|+.|++++| .++.++ .++.+++|++|++++|.
T Consensus 230 ~~n~l~~~~~~~~~----~l~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~ 283 (680)
T 1ziw_A 230 SNSQLSTTSNTTFL----GLKWTNLTMLDLSYN-NLNVVGNDSFAWLPQLEYFFLEYNN 283 (680)
T ss_dssp TTSCCCEECTTTTG----GGGGSCCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSCC
T ss_pred cCCcccccChhHhh----ccCcCCCCEEECCCC-CcCccCcccccCcccccEeeCCCCc
Confidence 55555544333221 12 23777777776 444432 45667777777777663
No 46
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.83 E-value=1.3e-20 Score=229.92 Aligned_cols=149 Identities=18% Similarity=0.215 Sum_probs=119.4
Q ss_pred EEecccCcccccccccCCCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcC-chhhhcccccceeecc
Q 045686 517 RLSLWGSSIDFLALVEAPSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQL-PEEIGRLKNLHHLNLS 595 (885)
Q Consensus 517 ~l~l~~~~i~~~~~~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~l-p~~i~~L~~L~~L~Ls 595 (885)
..+.+++.++. +|. ..++|++|++++|.++. +++..|.++++|++|+|++|..+..+ |..+++|++|++|+|+
T Consensus 8 ~~dcs~~~L~~--vP~--lp~~l~~LdLs~N~i~~--i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls 81 (844)
T 3j0a_A 8 IAFYRFCNLTQ--VPQ--VLNTTERLLLSFNYIRT--VTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81 (844)
T ss_dssp EEEESCCCSSC--CCS--SCTTCCEEEEESCCCCE--ECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECT
T ss_pred EEEccCCCCCC--CCC--CCCCcCEEECCCCcCCc--cChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECC
Confidence 34455566666 555 45799999999999988 76666999999999999999666666 7889999999999999
Q ss_pred CCccccc-ChhhhccccccEeecCCcccccccCC-cccccCcccceecccccccccccCcccccccchhhhcCccCCcce
Q 045686 596 NTSIGCL-PTAIKRLIKLKVLLLDGIQCHLSIPE-GVISSLSSLQVFSCFSTELVELIDPLFNETAILDELNCLEHLNDL 673 (885)
Q Consensus 596 ~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~L 673 (885)
+|.+..+ |..++++++|++|++++|.....+|. ..+++|++|++|++++|.+.+.. ....+.++++|+.|
T Consensus 82 ~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~--------~~~~~~~L~~L~~L 153 (844)
T 3j0a_A 82 SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY--------LHPSFGKLNSLKSI 153 (844)
T ss_dssp TCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCC--------CCGGGGTCSSCCEE
T ss_pred CCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccc--------cchhHhhCCCCCEE
Confidence 9999777 77899999999999999974443443 34889999999999999886421 22456778888888
Q ss_pred eEEEec
Q 045686 674 SLTLFS 679 (885)
Q Consensus 674 ~l~~~~ 679 (885)
+++.+.
T Consensus 154 ~Ls~N~ 159 (844)
T 3j0a_A 154 DFSSNQ 159 (844)
T ss_dssp EEESSC
T ss_pred ECCCCc
Confidence 887654
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.83 E-value=3.1e-20 Score=200.89 Aligned_cols=247 Identities=21% Similarity=0.245 Sum_probs=159.5
Q ss_pred hhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCch-hhhcccccceeeccCCccccc-ChhhhccccccEe
Q 045686 538 QVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPE-EIGRLKNLHHLNLSNTSIGCL-PTAIKRLIKLKVL 615 (885)
Q Consensus 538 ~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~-~i~~L~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L 615 (885)
+++.++++++.+.. +|..+ .+.|++|+|++| .++.+|. .++++++|++|++++|.+..+ |..+.++++|++|
T Consensus 32 ~l~~l~~~~~~l~~--lp~~~---~~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (330)
T 1xku_A 32 HLRVVQCSDLGLEK--VPKDL---PPDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERL 105 (330)
T ss_dssp ETTEEECTTSCCCS--CCCSC---CTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred CCeEEEecCCCccc--cCccC---CCCCeEEECCCC-cCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEE
Confidence 78888899988888 88753 378999999999 7877765 789999999999999999887 7789999999999
Q ss_pred ecCCcccccccCCcccccCcccceecccccccccccCcccccccchhhhcCccCCcceeEEEechhhHHhhhCCCccccc
Q 045686 616 LLDGIQCHLSIPEGVISSLSSLQVFSCFSTELVELIDPLFNETAILDELNCLEHLNDLSLTLFSTEAVDKLLNSPKLQRC 695 (885)
Q Consensus 616 ~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~ 695 (885)
++++|. +..+|.. +. ++|++|++++|.+.+. ....+..+++|+.|++..+..........
T Consensus 106 ~Ls~n~-l~~l~~~-~~--~~L~~L~l~~n~l~~~---------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~------- 165 (330)
T 1xku_A 106 YLSKNQ-LKELPEK-MP--KTLQELRVHENEITKV---------RKSVFNGLNQMIVVELGTNPLKSSGIENG------- 165 (330)
T ss_dssp ECCSSC-CSBCCSS-CC--TTCCEEECCSSCCCBB---------CHHHHTTCTTCCEEECCSSCCCGGGBCTT-------
T ss_pred ECCCCc-CCccChh-hc--ccccEEECCCCccccc---------CHhHhcCCccccEEECCCCcCCccCcChh-------
Confidence 999997 7888876 33 7999999999987642 23345566666666655433211100000
Q ss_pred ceeEEeccccccccchhhhhhccceEEeeccCccceeecCCCCCccccccccEEeeccccCCccc--cccccCCCccEEe
Q 045686 696 IRRLTIESSELLSLELGLMLSHLEILRIKCGFMKRLNIDQGLNNRPSFSALRRLSIILCPDIQNL--TCLVHVPSLQFLS 773 (885)
Q Consensus 696 L~~L~l~~~~~~~~~l~~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~l--~~l~~l~~L~~L~ 773 (885)
.+..+ ++|+.|+++.+.++.++... +++|+.|++++| .++.+ ..+..+++|+.|+
T Consensus 166 --------------~~~~l-~~L~~L~l~~n~l~~l~~~~-------~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~ 222 (330)
T 1xku_A 166 --------------AFQGM-KKLSYIRIADTNITTIPQGL-------PPSLTELHLDGN-KITKVDAASLKGLNNLAKLG 222 (330)
T ss_dssp --------------GGGGC-TTCCEEECCSSCCCSCCSSC-------CTTCSEEECTTS-CCCEECTGGGTTCTTCCEEE
T ss_pred --------------hccCC-CCcCEEECCCCccccCCccc-------cccCCEEECCCC-cCCccCHHHhcCCCCCCEEE
Confidence 11122 55666666555555443221 356666666666 34443 2455666666666
Q ss_pred EeccCCchhhhcccccCCCcccccccccceeccccccccccccCCccCCCCccEEeeccCCCCCCcCCCC
Q 045686 774 LSNCHSLEEIVGTYASGSSESRNYFSNLMAVDLDGLPTLRSICSGTVAFPSLQTLSITGCPSLKKLPFNS 843 (885)
Q Consensus 774 L~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~~ 843 (885)
+++|. +..++. ..+..+++|++|++++| .+..++..+..+++|++|++++| .++.+|...
T Consensus 223 Ls~n~-l~~~~~-------~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N-~i~~~~~~~ 282 (330)
T 1xku_A 223 LSFNS-ISAVDN-------GSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNN-NISAIGSND 282 (330)
T ss_dssp CCSSC-CCEECT-------TTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSS-CCCCCCTTS
T ss_pred CCCCc-CceeCh-------hhccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCC-cCCccChhh
Confidence 66653 332221 23455566666666664 34455555556666666666663 455555443
No 48
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.83 E-value=7.2e-20 Score=213.24 Aligned_cols=127 Identities=14% Similarity=0.142 Sum_probs=109.1
Q ss_pred ceEEEecccCcccccccccCCCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcC-chhhhccccccee
Q 045686 514 EAVRLSLWGSSIDFLALVEAPSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQL-PEEIGRLKNLHHL 592 (885)
Q Consensus 514 ~~~~l~l~~~~i~~~~~~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~l-p~~i~~L~~L~~L 592 (885)
..++++++++.++. +|... .++|++|++++|.+.. +++..|.++++|++|+|++| .++.+ |..++++++|++|
T Consensus 32 ~~~~l~ls~~~L~~--ip~~~-~~~L~~L~Ls~N~i~~--~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L 105 (562)
T 3a79_B 32 LESMVDYSNRNLTH--VPKDL-PPRTKALSLSQNSISE--LRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYL 105 (562)
T ss_dssp -CCEEECTTSCCCS--CCTTS-CTTCCEEECCSSCCCC--CCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCCEE
T ss_pred CCcEEEcCCCCCcc--CCCCC-CCCcCEEECCCCCccc--cChhhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCCEE
Confidence 34789999999887 44322 3899999999999988 88777999999999999999 77766 7789999999999
Q ss_pred eccCCcccccChhhhccccccEeecCCcccccccCC-cccccCcccceeccccccccc
Q 045686 593 NLSNTSIGCLPTAIKRLIKLKVLLLDGIQCHLSIPE-GVISSLSSLQVFSCFSTELVE 649 (885)
Q Consensus 593 ~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~-~~i~~L~~L~~L~l~~~~~~~ 649 (885)
++++|++..+|.. .+++|++|++++|. +..+|. ..++++++|++|++++|.+.+
T Consensus 106 ~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l~~ 160 (562)
T 3a79_B 106 DVSHNRLQNISCC--PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKFRQ 160 (562)
T ss_dssp ECTTSCCCEECSC--CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSBCCT
T ss_pred ECCCCcCCccCcc--ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCcccc
Confidence 9999999999987 89999999999997 666552 339999999999999998754
No 49
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.81 E-value=9e-20 Score=211.33 Aligned_cols=255 Identities=22% Similarity=0.201 Sum_probs=147.4
Q ss_pred ceEEEecccCcccccccccCCCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCchhhhcccccceee
Q 045686 514 EAVRLSLWGSSIDFLALVEAPSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPEEIGRLKNLHHLN 593 (885)
Q Consensus 514 ~~~~l~l~~~~i~~~~~~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~ 593 (885)
+++.|++++|.++. +|... .++|++|++++|.++. +|. .+++|++|+|++| .++.+|. .+++|++|+
T Consensus 41 ~l~~L~ls~n~L~~--lp~~l-~~~L~~L~L~~N~l~~--lp~----~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~ 107 (622)
T 3g06_A 41 GNAVLNVGESGLTT--LPDCL-PAHITTLVIPDNNLTS--LPA----LPPELRTLEVSGN-QLTSLPV---LPPGLLELS 107 (622)
T ss_dssp CCCEEECCSSCCSC--CCSCC-CTTCSEEEECSCCCSC--CCC----CCTTCCEEEECSC-CCSCCCC---CCTTCCEEE
T ss_pred CCcEEEecCCCcCc--cChhh-CCCCcEEEecCCCCCC--CCC----cCCCCCEEEcCCC-cCCcCCC---CCCCCCEEE
Confidence 35666666666665 33321 1567777777776665 655 3566777777777 5666665 566677777
Q ss_pred ccCCcccccChhhhccccccEeecCCcccccccCCcccccCcccceecccccccccccCcccccccchhhhcCccCCcce
Q 045686 594 LSNTSIGCLPTAIKRLIKLKVLLLDGIQCHLSIPEGVISSLSSLQVFSCFSTELVELIDPLFNETAILDELNCLEHLNDL 673 (885)
Q Consensus 594 Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~L 673 (885)
+++|++..+|. .+++|++|++++|. +..+|.. +++|++|++++|.+.+. + ..+.+|+.|
T Consensus 108 Ls~N~l~~l~~---~l~~L~~L~L~~N~-l~~lp~~----l~~L~~L~Ls~N~l~~l-~------------~~~~~L~~L 166 (622)
T 3g06_A 108 IFSNPLTHLPA---LPSGLCKLWIFGNQ-LTSLPVL----PPGLQELSVSDNQLASL-P------------ALPSELCKL 166 (622)
T ss_dssp ECSCCCCCCCC---CCTTCCEEECCSSC-CSCCCCC----CTTCCEEECCSSCCSCC-C------------CCCTTCCEE
T ss_pred CcCCcCCCCCC---CCCCcCEEECCCCC-CCcCCCC----CCCCCEEECcCCcCCCc-C------------CccCCCCEE
Confidence 77777766665 45667777777765 5566653 36677777776665431 1 012344444
Q ss_pred eEEEechhhHHhhhCCCcccccceeEEeccccccccchhhhhhccceEEeeccCccceeecCCCCCccccccccEEeecc
Q 045686 674 SLTLFSTEAVDKLLNSPKLQRCIRRLTIESSELLSLELGLMLSHLEILRIKCGFMKRLNIDQGLNNRPSFSALRRLSIIL 753 (885)
Q Consensus 674 ~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~l~~L~~L~L~~ 753 (885)
.+..+....++ ...++|+.|++++|.+..++. .+++|+.|++++|.++.++. .+++|+.|++++
T Consensus 167 ~L~~N~l~~l~------~~~~~L~~L~Ls~N~l~~l~~--~~~~L~~L~L~~N~l~~l~~--------~~~~L~~L~Ls~ 230 (622)
T 3g06_A 167 WAYNNQLTSLP------MLPSGLQELSVSDNQLASLPT--LPSELYKLWAYNNRLTSLPA--------LPSGLKELIVSG 230 (622)
T ss_dssp ECCSSCCSCCC------CCCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSSCCC--------CCTTCCEEECCS
T ss_pred ECCCCCCCCCc------ccCCCCcEEECCCCCCCCCCC--ccchhhEEECcCCcccccCC--------CCCCCCEEEccC
Confidence 44433322222 122356666666666444321 12566666666666655431 146677777766
Q ss_pred ccCCccccccccCCCccEEeEeccCCchhhhcccccCCCcccccccccceeccccccccccccCCccCCCCccEEeeccC
Q 045686 754 CPDIQNLTCLVHVPSLQFLSLSNCHSLEEIVGTYASGSSESRNYFSNLMAVDLDGLPTLRSICSGTVAFPSLQTLSITGC 833 (885)
Q Consensus 754 c~~l~~l~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~p~L~~L~i~~C 833 (885)
| .++.+| ..+++|+.|+|++| .++.++ . .+++|+.|+|++| .+..++..+..+++|+.|++++|
T Consensus 231 N-~L~~lp--~~l~~L~~L~Ls~N-~L~~lp---------~--~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N 294 (622)
T 3g06_A 231 N-RLTSLP--VLPSELKELMVSGN-RLTSLP---------M--LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGN 294 (622)
T ss_dssp S-CCSCCC--CCCTTCCEEECCSS-CCSCCC---------C--CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSC
T ss_pred C-ccCcCC--CCCCcCcEEECCCC-CCCcCC---------c--ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCC
Confidence 6 555555 44566777777766 333331 1 4566777777665 44556655666677777777665
Q ss_pred C
Q 045686 834 P 834 (885)
Q Consensus 834 ~ 834 (885)
+
T Consensus 295 ~ 295 (622)
T 3g06_A 295 P 295 (622)
T ss_dssp C
T ss_pred C
Confidence 4
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.81 E-value=3.9e-20 Score=202.00 Aligned_cols=181 Identities=20% Similarity=0.232 Sum_probs=95.8
Q ss_pred chhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcC-chhhhcccccceeeccCCcccccChh-hhccccccE
Q 045686 537 PQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQL-PEEIGRLKNLHHLNLSNTSIGCLPTA-IKRLIKLKV 614 (885)
Q Consensus 537 ~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~l-p~~i~~L~~L~~L~Ls~~~i~~lp~~-i~~L~~L~~ 614 (885)
++|++|++++|.++. ++...|.++++|++|++++| .++.+ |..++++++|++|++++|++..+|.. ++++++|++
T Consensus 52 ~~L~~L~l~~n~i~~--~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 128 (353)
T 2z80_A 52 EAVKSLDLSNNRITY--ISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTF 128 (353)
T ss_dssp TTCCEEECTTSCCCE--ECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSE
T ss_pred ccCcEEECCCCcCcc--cCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCE
Confidence 456666666666655 55544666666666666666 45444 34466666666666666666666655 566666666
Q ss_pred eecCCcccccccCC-cccccCcccceecccccccccccCcccccccchhhhcCccCCcceeEEEechhhHHhhhCCCccc
Q 045686 615 LLLDGIQCHLSIPE-GVISSLSSLQVFSCFSTELVELIDPLFNETAILDELNCLEHLNDLSLTLFSTEAVDKLLNSPKLQ 693 (885)
Q Consensus 615 L~l~~~~~l~~lp~-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~~~ 693 (885)
|++++|. +..+|. ..+.++++|++|++++|...+. .....+..+++|+.|+++.+...... .......
T Consensus 129 L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~--------~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~l 197 (353)
T 2z80_A 129 LNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTK--------IQRKDFAGLTFLEELEIDASDLQSYE--PKSLKSI 197 (353)
T ss_dssp EECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCE--------ECTTTTTTCCEEEEEEEEETTCCEEC--TTTTTTC
T ss_pred EECCCCC-CcccCchhhhccCCCCcEEECCCCccccc--------cCHHHccCCCCCCEEECCCCCcCccC--HHHHhcc
Confidence 6666664 555555 3356666666666666532111 11233445556666666544322110 0000111
Q ss_pred ccceeEEeccccccccc--hhhhhhccceEEeeccCccce
Q 045686 694 RCIRRLTIESSELLSLE--LGLMLSHLEILRIKCGFMKRL 731 (885)
Q Consensus 694 ~~L~~L~l~~~~~~~~~--l~~~~~~L~~L~l~~~~l~~l 731 (885)
++|+.|++++|.+..++ ....+++|+.|+++.|.++.+
T Consensus 198 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~ 237 (353)
T 2z80_A 198 QNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTF 237 (353)
T ss_dssp SEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTC
T ss_pred ccCCeecCCCCccccchhhhhhhcccccEEECCCCccccc
Confidence 24555555555533222 111125666666655555543
No 51
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.80 E-value=6.5e-21 Score=204.63 Aligned_cols=123 Identities=17% Similarity=0.062 Sum_probs=86.4
Q ss_pred eEEEecccCcccccccccCCCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCchhhhcccccceeec
Q 045686 515 AVRLSLWGSSIDFLALVEAPSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPEEIGRLKNLHHLNL 594 (885)
Q Consensus 515 ~~~l~l~~~~i~~~~~~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~L 594 (885)
+...++..+.+.......+..+++|++|++++|.+.. +++..|..+++|++|+|++| .+...+. ++.+++|++|++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~L 87 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQ--ISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDL 87 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCC--CCHHHHTTCTTCCEEECTTS-CCEEEEE-ETTCTTCCEEEC
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCc--CCHHHhhCCCcCCEEECCCC-cCCcchh-hhhcCCCCEEEC
Confidence 3344444454443212223456788888888888877 77666888888888888888 6665554 788888888888
Q ss_pred cCCcccccChhhhccccccEeecCCcccccccCCcccccCcccceeccccccccc
Q 045686 595 SNTSIGCLPTAIKRLIKLKVLLLDGIQCHLSIPEGVISSLSSLQVFSCFSTELVE 649 (885)
Q Consensus 595 s~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~ 649 (885)
++|.+..+| .+++|++|++++|. +..++.. .+++|++|++++|.+.+
T Consensus 88 s~n~l~~l~----~~~~L~~L~l~~n~-l~~~~~~---~~~~L~~L~l~~N~l~~ 134 (317)
T 3o53_A 88 NNNYVQELL----VGPSIETLHAANNN-ISRVSCS---RGQGKKNIYLANNKITM 134 (317)
T ss_dssp CSSEEEEEE----ECTTCCEEECCSSC-CSEEEEC---CCSSCEEEECCSSCCCS
T ss_pred cCCcccccc----CCCCcCEEECCCCc-cCCcCcc---ccCCCCEEECCCCCCCC
Confidence 888887766 34788888888886 5666543 46778888888887754
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.79 E-value=2.6e-19 Score=191.33 Aligned_cols=125 Identities=19% Similarity=0.157 Sum_probs=86.2
Q ss_pred EEecccCcccccccccCCCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcC---chhhhcccccceee
Q 045686 517 RLSLWGSSIDFLALVEAPSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQL---PEEIGRLKNLHHLN 593 (885)
Q Consensus 517 ~l~l~~~~i~~~~~~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~l---p~~i~~L~~L~~L~ 593 (885)
.++..++.++. +|. .-.++|++|++++|.+.. +|..+|.++++|++|+|++| .++.+ |..+..+++|++|+
T Consensus 11 ~l~c~~~~l~~--ip~-~~~~~l~~L~L~~n~l~~--i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~ 84 (306)
T 2z66_A 11 EIRCNSKGLTS--VPT-GIPSSATRLELESNKLQS--LPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLD 84 (306)
T ss_dssp EEECCSSCCSS--CCS-CCCTTCCEEECCSSCCCC--CCTTTTTTCTTCSEEECCSS-CCCEEEEEEHHHHSCSCCCEEE
T ss_pred EEEcCCCCccc--CCC-CCCCCCCEEECCCCccCc--cCHhHhhccccCCEEECCCC-ccCcccCcccccccccccCEEE
Confidence 34445555554 232 122567777777777776 77776777888888888877 66544 56667777888888
Q ss_pred ccCCcccccChhhhccccccEeecCCcccccccCC-cccccCcccceecccccccc
Q 045686 594 LSNTSIGCLPTAIKRLIKLKVLLLDGIQCHLSIPE-GVISSLSSLQVFSCFSTELV 648 (885)
Q Consensus 594 Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~-~~i~~L~~L~~L~l~~~~~~ 648 (885)
+++|.+..+|..+..+++|++|++++|. +..++. ..+.++++|++|++++|.+.
T Consensus 85 Ls~n~i~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~ 139 (306)
T 2z66_A 85 LSFNGVITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTR 139 (306)
T ss_dssp CCSCSEEEEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCE
T ss_pred CCCCccccChhhcCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCC
Confidence 8888777777777778888888888876 555553 33777778888887777654
No 53
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.78 E-value=4.1e-19 Score=200.07 Aligned_cols=220 Identities=20% Similarity=0.264 Sum_probs=147.1
Q ss_pred cceEEEecccCcccccccccCCCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCch-hhhcccccce
Q 045686 513 HEAVRLSLWGSSIDFLALVEAPSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPE-EIGRLKNLHH 591 (885)
Q Consensus 513 ~~~~~l~l~~~~i~~~~~~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~-~i~~L~~L~~ 591 (885)
++++.|++++|.+.......+..+++|++|++++|.+.. ++...|.++++|++|+|++| .++.+|. .+..+++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~--i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~ 140 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRT--IEIGAFNGLANLNTLELFDN-RLTTIPNGAFVYLSKLKE 140 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCE--ECGGGGTTCSSCCEEECCSS-CCSSCCTTTSCSCSSCCE
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCc--cChhhccCCccCCEEECCCC-cCCeeCHhHhhccccCce
Confidence 466777777777766444556677777777777777766 66666777777777777777 6666654 4667777777
Q ss_pred eeccCCcccccCh-hhhccccccEeecCCcccccccCCcccccCcccceecccccccccccCcccccccchhhhcCccCC
Q 045686 592 LNLSNTSIGCLPT-AIKRLIKLKVLLLDGIQCHLSIPEGVISSLSSLQVFSCFSTELVELIDPLFNETAILDELNCLEHL 670 (885)
Q Consensus 592 L~Ls~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L 670 (885)
|++++|.+..+|. .+.++++|++|++++|..+..++...+.++++|++|++++|.+.. +..+..++
T Consensus 141 L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-----------~~~~~~l~-- 207 (440)
T 3zyj_A 141 LWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-----------IPNLTPLI-- 207 (440)
T ss_dssp EECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-----------CCCCTTCS--
T ss_pred eeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-----------ccccCCCc--
Confidence 7777777776665 366777777777777666666766557777777777777776542 11122222
Q ss_pred cceeEEEechhhHHhhhCCCcccccceeEEeccccccccc---hhhhhhccceEEeeccCccceeecCCCCCcccccccc
Q 045686 671 NDLSLTLFSTEAVDKLLNSPKLQRCIRRLTIESSELLSLE---LGLMLSHLEILRIKCGFMKRLNIDQGLNNRPSFSALR 747 (885)
Q Consensus 671 ~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~---l~~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~l~~L~ 747 (885)
+|+.|++++|.+..+. +..+ ++|+.|+++.|.++.++...+. .+++|+
T Consensus 208 ------------------------~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~----~l~~L~ 258 (440)
T 3zyj_A 208 ------------------------KLDELDLSGNHLSAIRPGSFQGL-MHLQKLWMIQSQIQVIERNAFD----NLQSLV 258 (440)
T ss_dssp ------------------------SCCEEECTTSCCCEECTTTTTTC-TTCCEEECTTCCCCEECTTSST----TCTTCC
T ss_pred ------------------------ccCEEECCCCccCccChhhhccC-ccCCEEECCCCceeEEChhhhc----CCCCCC
Confidence 4566666666644332 3333 7788888877777776654433 378888
Q ss_pred EEeeccccCCcccc--ccccCCCccEEeEeccC
Q 045686 748 RLSIILCPDIQNLT--CLVHVPSLQFLSLSNCH 778 (885)
Q Consensus 748 ~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~~~ 778 (885)
.|+|++| .++.++ .+..+++|+.|+|++|+
T Consensus 259 ~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 259 EINLAHN-NLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp EEECTTS-CCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred EEECCCC-CCCccChhHhccccCCCEEEcCCCC
Confidence 8888888 566654 35678888888888875
No 54
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.78 E-value=1.5e-18 Score=195.41 Aligned_cols=218 Identities=17% Similarity=0.220 Sum_probs=112.5
Q ss_pred CcccEEecCCCCCCCcCc-hhhhcccccceeeccCCcccccCh-hhhccccccEeecCCcccccccCCcccccCccccee
Q 045686 563 DALEVLDLSYNLDLNQLP-EEIGRLKNLHHLNLSNTSIGCLPT-AIKRLIKLKVLLLDGIQCHLSIPEGVISSLSSLQVF 640 (885)
Q Consensus 563 ~~L~~L~Ls~~~~i~~lp-~~i~~L~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L 640 (885)
+.+++|+|++| .++.++ ..+.++++|++|+|++|.|..++. .+.++++|++|++++|. +..+|.+.+..+++|++|
T Consensus 64 ~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 141 (440)
T 3zyj_A 64 TNTRLLNLHEN-QIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR-LTTIPNGAFVYLSKLKEL 141 (440)
T ss_dssp TTCSEEECCSC-CCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC-CSSCCTTTSCSCSSCCEE
T ss_pred CCCcEEEccCC-cCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc-CCeeCHhHhhccccCcee
Confidence 45556666666 444433 445556666666666665555542 35556666666666654 555555445566666666
Q ss_pred cccccccccccCcccccccchhhhcCccCCcceeEEEechhhHHhhhCCCcccccceeEEecccc-ccccc---hhhhhh
Q 045686 641 SCFSTELVELIDPLFNETAILDELNCLEHLNDLSLTLFSTEAVDKLLNSPKLQRCIRRLTIESSE-LLSLE---LGLMLS 716 (885)
Q Consensus 641 ~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~---l~~~~~ 716 (885)
++++|.+... ....+..+++|+.| ++++|+ ...+. +..+ +
T Consensus 142 ~L~~N~i~~~---------~~~~~~~l~~L~~L--------------------------~l~~~~~l~~i~~~~~~~l-~ 185 (440)
T 3zyj_A 142 WLRNNPIESI---------PSYAFNRIPSLRRL--------------------------DLGELKRLSYISEGAFEGL-S 185 (440)
T ss_dssp ECCSCCCCEE---------CTTTTTTCTTCCEE--------------------------ECCCCTTCCEECTTTTTTC-S
T ss_pred eCCCCccccc---------CHHHhhhCcccCEe--------------------------CCCCCCCcceeCcchhhcc-c
Confidence 6665554321 01112222222222 222211 11000 1111 5
Q ss_pred ccceEEeeccCccceeecCCCCCccccccccEEeeccccCCccc--cccccCCCccEEeEeccCCchhhhcccccCCCcc
Q 045686 717 HLEILRIKCGFMKRLNIDQGLNNRPSFSALRRLSIILCPDIQNL--TCLVHVPSLQFLSLSNCHSLEEIVGTYASGSSES 794 (885)
Q Consensus 717 ~L~~L~l~~~~l~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~l--~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~ 794 (885)
+|+.|+++.|.++.++. . ..+++|+.|+|++| .++.+ ..+..+++|+.|+|++|. +..+.. ..
T Consensus 186 ~L~~L~L~~n~l~~~~~-~-----~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~-------~~ 250 (440)
T 3zyj_A 186 NLRYLNLAMCNLREIPN-L-----TPLIKLDELDLSGN-HLSAIRPGSFQGLMHLQKLWMIQSQ-IQVIER-------NA 250 (440)
T ss_dssp SCCEEECTTSCCSSCCC-C-----TTCSSCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCC-CCEECT-------TS
T ss_pred ccCeecCCCCcCccccc-c-----CCCcccCEEECCCC-ccCccChhhhccCccCCEEECCCCc-eeEECh-------hh
Confidence 56666665556655542 1 23667777777777 45554 245667777777777763 333322 34
Q ss_pred cccccccceeccccccccccccC-CccCCCCccEEeeccCC
Q 045686 795 RNYFSNLMAVDLDGLPTLRSICS-GTVAFPSLQTLSITGCP 834 (885)
Q Consensus 795 ~~~~~~L~~L~l~~~~~l~~~~~-~~~~~p~L~~L~i~~C~ 834 (885)
+..+++|+.|+|++| .+..++. .+..+++|+.|+++++|
T Consensus 251 ~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 251 FDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp STTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred hcCCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCCC
Confidence 556677777777765 3444433 34556677777776654
No 55
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.78 E-value=4e-19 Score=199.87 Aligned_cols=261 Identities=20% Similarity=0.215 Sum_probs=129.8
Q ss_pred ceEEEecccCcccccccccCCCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCchhhhcccccceee
Q 045686 514 EAVRLSLWGSSIDFLALVEAPSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPEEIGRLKNLHHLN 593 (885)
Q Consensus 514 ~~~~l~l~~~~i~~~~~~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~ 593 (885)
+++.|++.+|.+.. ++.+..+++|++|++++|.+.. +|.. ..+|++|++++| .++.+| .++++++|++|+
T Consensus 132 ~L~~L~L~~n~l~~--lp~~~~l~~L~~L~l~~N~l~~--lp~~----~~~L~~L~L~~n-~l~~l~-~~~~l~~L~~L~ 201 (454)
T 1jl5_A 132 LLEYLGVSNNQLEK--LPELQNSSFLKIIDVDNNSLKK--LPDL----PPSLEFIAAGNN-QLEELP-ELQNLPFLTAIY 201 (454)
T ss_dssp TCCEEECCSSCCSS--CCCCTTCTTCCEEECCSSCCSC--CCCC----CTTCCEEECCSS-CCSSCC-CCTTCTTCCEEE
T ss_pred CCCEEECcCCCCCC--CcccCCCCCCCEEECCCCcCcc--cCCC----cccccEEECcCC-cCCcCc-cccCCCCCCEEE
Confidence 45555555555554 3445555555555555555554 4432 235556666555 555555 355566666666
Q ss_pred ccCCcccccChhhhccccccEeecCCcccccccCCcccccCcccceecccccccccccCcccccccchhhhcCccCCcce
Q 045686 594 LSNTSIGCLPTAIKRLIKLKVLLLDGIQCHLSIPEGVISSLSSLQVFSCFSTELVELIDPLFNETAILDELNCLEHLNDL 673 (885)
Q Consensus 594 Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~L 673 (885)
+++|.+..+|... ++|++|++++|. +..+|. ++.+++|++|++++|.+.+. |. .+++|+.|
T Consensus 202 l~~N~l~~l~~~~---~~L~~L~l~~n~-l~~lp~--~~~l~~L~~L~l~~N~l~~l-~~------------~~~~L~~L 262 (454)
T 1jl5_A 202 ADNNSLKKLPDLP---LSLESIVAGNNI-LEELPE--LQNLPFLTTIYADNNLLKTL-PD------------LPPSLEAL 262 (454)
T ss_dssp CCSSCCSSCCCCC---TTCCEEECCSSC-CSSCCC--CTTCTTCCEEECCSSCCSSC-CS------------CCTTCCEE
T ss_pred CCCCcCCcCCCCc---CcccEEECcCCc-CCcccc--cCCCCCCCEEECCCCcCCcc-cc------------cccccCEE
Confidence 6666555555322 355666666654 445552 55666666666666555421 10 12344555
Q ss_pred eEEEechhhHHhhhCCCcccccceeEEeccccccccchhhhhhccceEEeeccCccceeecCCCCCccccccccEEeecc
Q 045686 674 SLTLFSTEAVDKLLNSPKLQRCIRRLTIESSELLSLELGLMLSHLEILRIKCGFMKRLNIDQGLNNRPSFSALRRLSIIL 753 (885)
Q Consensus 674 ~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~l~~L~~L~L~~ 753 (885)
++..+....++ ...++|+.|++++|.+..++ ...++|+.|+++.|.++.++. ..++|+.|++++
T Consensus 263 ~l~~N~l~~l~------~~~~~L~~L~ls~N~l~~l~--~~~~~L~~L~l~~N~l~~i~~--------~~~~L~~L~Ls~ 326 (454)
T 1jl5_A 263 NVRDNYLTDLP------ELPQSLTFLDVSENIFSGLS--ELPPNLYYLNASSNEIRSLCD--------LPPSLEELNVSN 326 (454)
T ss_dssp ECCSSCCSCCC------CCCTTCCEEECCSSCCSEES--CCCTTCCEEECCSSCCSEECC--------CCTTCCEEECCS
T ss_pred ECCCCcccccC------cccCcCCEEECcCCccCccc--CcCCcCCEEECcCCcCCcccC--------CcCcCCEEECCC
Confidence 55433322211 11235666666666543322 111456666666565554321 024677777777
Q ss_pred ccCCccccccccCCCccEEeEeccCCchhhhcccccCCCcccccccccceeccccccccc--cccCCccCC---------
Q 045686 754 CPDIQNLTCLVHVPSLQFLSLSNCHSLEEIVGTYASGSSESRNYFSNLMAVDLDGLPTLR--SICSGTVAF--------- 822 (885)
Q Consensus 754 c~~l~~l~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~--~~~~~~~~~--------- 822 (885)
| .++.+|.. +++|+.|++++|. ++.++ . .+++|++|++++|.... .+|..+..+
T Consensus 327 N-~l~~lp~~--~~~L~~L~L~~N~-l~~lp---------~--~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i 391 (454)
T 1jl5_A 327 N-KLIELPAL--PPRLERLIASFNH-LAEVP---------E--LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEV 391 (454)
T ss_dssp S-CCSCCCCC--CTTCCEEECCSSC-CSCCC---------C--CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-----
T ss_pred C-cccccccc--CCcCCEEECCCCc-ccccc---------c--hhhhccEEECCCCCCCcCCCChHHHHhhhhccccccc
Confidence 6 45555432 5677777777763 33331 1 35677777777764433 344444444
Q ss_pred ----CCccEEeeccCC
Q 045686 823 ----PSLQTLSITGCP 834 (885)
Q Consensus 823 ----p~L~~L~i~~C~ 834 (885)
++|+.|++++++
T Consensus 392 ~~~~~~L~~L~ls~N~ 407 (454)
T 1jl5_A 392 PELPQNLKQLHVETNP 407 (454)
T ss_dssp ----------------
T ss_pred ccccCcCCEEECCCCc
Confidence 677777777753
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.78 E-value=4.5e-19 Score=200.44 Aligned_cols=220 Identities=19% Similarity=0.221 Sum_probs=141.8
Q ss_pred cceEEEecccCcccccccccCCCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCchh-hhcccccce
Q 045686 513 HEAVRLSLWGSSIDFLALVEAPSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPEE-IGRLKNLHH 591 (885)
Q Consensus 513 ~~~~~l~l~~~~i~~~~~~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~-i~~L~~L~~ 591 (885)
++++.|++++|.+.......+..+++|++|++++|.+.. ++...|.++++|++|+|++| .++.+|.. ++++++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~--~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~ 151 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQ--IEVGAFNGLASLNTLELFDN-WLTVIPSGAFEYLSKLRE 151 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE--ECTTTTTTCTTCCEEECCSS-CCSBCCTTTSSSCTTCCE
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCC--cChhhccCcccCCEEECCCC-cCCccChhhhcccCCCCE
Confidence 466777777777766444456667777777777777666 66555677777777777777 56655543 566777777
Q ss_pred eeccCCcccccCh-hhhccccccEeecCCcccccccCCcccccCcccceecccccccccccCcccccccchhhhcCccCC
Q 045686 592 LNLSNTSIGCLPT-AIKRLIKLKVLLLDGIQCHLSIPEGVISSLSSLQVFSCFSTELVELIDPLFNETAILDELNCLEHL 670 (885)
Q Consensus 592 L~Ls~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L 670 (885)
|+|++|++..+|. .+.++++|++|++++|..+..+|...+.++++|++|++++|.+.+ +..+..++
T Consensus 152 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-----------~~~~~~l~-- 218 (452)
T 3zyi_A 152 LWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-----------MPNLTPLV-- 218 (452)
T ss_dssp EECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-----------CCCCTTCT--
T ss_pred EECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-----------cccccccc--
Confidence 7777777766665 366677777777777666666666556777777777777766542 11111222
Q ss_pred cceeEEEechhhHHhhhCCCcccccceeEEeccccccccc---hhhhhhccceEEeeccCccceeecCCCCCcccccccc
Q 045686 671 NDLSLTLFSTEAVDKLLNSPKLQRCIRRLTIESSELLSLE---LGLMLSHLEILRIKCGFMKRLNIDQGLNNRPSFSALR 747 (885)
Q Consensus 671 ~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~---l~~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~l~~L~ 747 (885)
+|+.|++++|.+..+. +..+ ++|+.|+++.|.+..+....+. .+++|+
T Consensus 219 ------------------------~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~----~l~~L~ 269 (452)
T 3zyi_A 219 ------------------------GLEELEMSGNHFPEIRPGSFHGL-SSLKKLWVMNSQVSLIERNAFD----GLASLV 269 (452)
T ss_dssp ------------------------TCCEEECTTSCCSEECGGGGTTC-TTCCEEECTTSCCCEECTTTTT----TCTTCC
T ss_pred ------------------------cccEEECcCCcCcccCcccccCc-cCCCEEEeCCCcCceECHHHhc----CCCCCC
Confidence 4556666666643332 2333 7788888877777766544432 367788
Q ss_pred EEeeccccCCcccc--ccccCCCccEEeEeccC
Q 045686 748 RLSIILCPDIQNLT--CLVHVPSLQFLSLSNCH 778 (885)
Q Consensus 748 ~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~~~ 778 (885)
.|+|++| .++.++ .+..+++|+.|+|++|+
T Consensus 270 ~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 270 ELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp EEECCSS-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred EEECCCC-cCCccChHHhccccCCCEEEccCCC
Confidence 8888887 566654 35677788888888775
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.78 E-value=1.6e-18 Score=195.84 Aligned_cols=103 Identities=17% Similarity=0.160 Sum_probs=66.2
Q ss_pred hccceEEeeccCccceeecCCCCCccccccccEEeeccccCCccc--cccccCCCccEEeEeccCCchhhhcccccCCCc
Q 045686 716 SHLEILRIKCGFMKRLNIDQGLNNRPSFSALRRLSIILCPDIQNL--TCLVHVPSLQFLSLSNCHSLEEIVGTYASGSSE 793 (885)
Q Consensus 716 ~~L~~L~l~~~~l~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~l--~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~ 793 (885)
++|+.|+++.|.++.++. . ..+++|+.|+|++| .++.+ ..+..+++|+.|+|++|. +..+.. .
T Consensus 196 ~~L~~L~L~~n~l~~~~~-~-----~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~-------~ 260 (452)
T 3zyi_A 196 FNLKYLNLGMCNIKDMPN-L-----TPLVGLEELEMSGN-HFPEIRPGSFHGLSSLKKLWVMNSQ-VSLIER-------N 260 (452)
T ss_dssp TTCCEEECTTSCCSSCCC-C-----TTCTTCCEEECTTS-CCSEECGGGGTTCTTCCEEECTTSC-CCEECT-------T
T ss_pred CCCCEEECCCCccccccc-c-----cccccccEEECcCC-cCcccCcccccCccCCCEEEeCCCc-CceECH-------H
Confidence 566667776666665532 1 23677888888887 45554 256777888888888774 443322 3
Q ss_pred ccccccccceeccccccccccccC-CccCCCCccEEeeccCC
Q 045686 794 SRNYFSNLMAVDLDGLPTLRSICS-GTVAFPSLQTLSITGCP 834 (885)
Q Consensus 794 ~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~p~L~~L~i~~C~ 834 (885)
.+..+++|+.|+|++| .+..++. .+..+++|+.|+++++|
T Consensus 261 ~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 261 AFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred HhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCC
Confidence 5666778888888775 4454443 34567778888877754
No 58
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.78 E-value=4.6e-19 Score=205.36 Aligned_cols=257 Identities=21% Similarity=0.163 Sum_probs=205.6
Q ss_pred hhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCchhhhcccccceeeccCCcccccChhhhccccccEeec
Q 045686 538 QVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPEEIGRLKNLHHLNLSNTSIGCLPTAIKRLIKLKVLLL 617 (885)
Q Consensus 538 ~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l 617 (885)
++++|++++|.++. +|..++ ++|++|+|++| .++.+|. .+++|++|+|++|+|+.+|. .+++|++|++
T Consensus 41 ~l~~L~ls~n~L~~--lp~~l~---~~L~~L~L~~N-~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 41 GNAVLNVGESGLTT--LPDCLP---AHITTLVIPDN-NLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSI 108 (622)
T ss_dssp CCCEEECCSSCCSC--CCSCCC---TTCSEEEECSC-CCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEE
T ss_pred CCcEEEecCCCcCc--cChhhC---CCCcEEEecCC-CCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEEC
Confidence 57889999999988 888643 89999999999 8999987 68999999999999999997 7899999999
Q ss_pred CCcccccccCCcccccCcccceecccccccccccCcccccccchhhhcCccCCcceeEEEechhhHHhhhCCCcccccce
Q 045686 618 DGIQCHLSIPEGVISSLSSLQVFSCFSTELVELIDPLFNETAILDELNCLEHLNDLSLTLFSTEAVDKLLNSPKLQRCIR 697 (885)
Q Consensus 618 ~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~ 697 (885)
++|. +..+|. .+++|++|++++|.+.+. |. .+++|+.|+++.+....++ ....+|+
T Consensus 109 s~N~-l~~l~~----~l~~L~~L~L~~N~l~~l-p~------------~l~~L~~L~Ls~N~l~~l~------~~~~~L~ 164 (622)
T 3g06_A 109 FSNP-LTHLPA----LPSGLCKLWIFGNQLTSL-PV------------LPPGLQELSVSDNQLASLP------ALPSELC 164 (622)
T ss_dssp CSCC-CCCCCC----CCTTCCEEECCSSCCSCC-CC------------CCTTCCEEECCSSCCSCCC------CCCTTCC
T ss_pred cCCc-CCCCCC----CCCCcCEEECCCCCCCcC-CC------------CCCCCCEEECcCCcCCCcC------CccCCCC
Confidence 9996 778876 568899999999987641 11 2367888888766544322 2335899
Q ss_pred eEEeccccccccchhhhhhccceEEeeccCccceeecCCCCCccccccccEEeeccccCCccccccccCCCccEEeEecc
Q 045686 698 RLTIESSELLSLELGLMLSHLEILRIKCGFMKRLNIDQGLNNRPSFSALRRLSIILCPDIQNLTCLVHVPSLQFLSLSNC 777 (885)
Q Consensus 698 ~L~l~~~~~~~~~l~~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~ 777 (885)
.|++++|.+..++ ..+++|+.|++++|.++.++. .+++|+.|++++| .++.++. .+++|+.|++++|
T Consensus 165 ~L~L~~N~l~~l~--~~~~~L~~L~Ls~N~l~~l~~--------~~~~L~~L~L~~N-~l~~l~~--~~~~L~~L~Ls~N 231 (622)
T 3g06_A 165 KLWAYNNQLTSLP--MLPSGLQELSVSDNQLASLPT--------LPSELYKLWAYNN-RLTSLPA--LPSGLKELIVSGN 231 (622)
T ss_dssp EEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC--------CCTTCCEEECCSS-CCSSCCC--CCTTCCEEECCSS
T ss_pred EEECCCCCCCCCc--ccCCCCcEEECCCCCCCCCCC--------ccchhhEEECcCC-cccccCC--CCCCCCEEEccCC
Confidence 9999999877665 334899999999898887653 2589999999999 6877764 3689999999998
Q ss_pred CCchhhhcccccCCCcccccccccceeccccccccccccCCccCCCCccEEeeccCCCCCCcCCCCccccCCceEEEccH
Q 045686 778 HSLEEIVGTYASGSSESRNYFSNLMAVDLDGLPTLRSICSGTVAFPSLQTLSITGCPSLKKLPFNSESARRSLISVRASA 857 (885)
Q Consensus 778 ~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~i~~~~ 857 (885)
.++.++ ..+++|+.|++++| .+..++. .+++|+.|++++| +|+.+|.. .....+|+.+....
T Consensus 232 -~L~~lp-----------~~l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N-~L~~lp~~-l~~l~~L~~L~L~~ 293 (622)
T 3g06_A 232 -RLTSLP-----------VLPSELKELMVSGN-RLTSLPM---LPSGLLSLSVYRN-QLTRLPES-LIHLSSETTVNLEG 293 (622)
T ss_dssp -CCSCCC-----------CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSS-CCCSCCGG-GGGSCTTCEEECCS
T ss_pred -ccCcCC-----------CCCCcCcEEECCCC-CCCcCCc---ccccCcEEeCCCC-CCCcCCHH-HhhccccCEEEecC
Confidence 444442 45689999999996 5677766 6789999999996 78899865 45678899998876
Q ss_pred hhhh
Q 045686 858 EWWN 861 (885)
Q Consensus 858 ~~~~ 861 (885)
+-+.
T Consensus 294 N~l~ 297 (622)
T 3g06_A 294 NPLS 297 (622)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 5544
No 59
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.78 E-value=9.3e-19 Score=196.87 Aligned_cols=263 Identities=21% Similarity=0.245 Sum_probs=155.0
Q ss_pred cceEEEecccCcccccccccCCCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCchhhhccccccee
Q 045686 513 HEAVRLSLWGSSIDFLALVEAPSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPEEIGRLKNLHHL 592 (885)
Q Consensus 513 ~~~~~l~l~~~~i~~~~~~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L 592 (885)
++++.|++++|.+.. ++..+ ++|++|++++|.+.. +|. |+.+++|++|++++| .++.+|..+ .+|++|
T Consensus 111 ~~L~~L~l~~n~l~~--l~~~~--~~L~~L~L~~n~l~~--lp~--~~~l~~L~~L~l~~N-~l~~lp~~~---~~L~~L 178 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKA--LSDLP--PLLEYLGVSNNQLEK--LPE--LQNSSFLKIIDVDNN-SLKKLPDLP---PSLEFI 178 (454)
T ss_dssp TTCCEEECCSSCCSC--CCSCC--TTCCEEECCSSCCSS--CCC--CTTCTTCCEEECCSS-CCSCCCCCC---TTCCEE
T ss_pred CCCcEEECCCCccCc--ccCCC--CCCCEEECcCCCCCC--Ccc--cCCCCCCCEEECCCC-cCcccCCCc---ccccEE
Confidence 345555555555443 22221 455555555555554 552 555555555555555 455555432 355555
Q ss_pred eccCCcccccChhhhccccccEeecCCcccccccCCcccccCcccceecccccccccccCcccccccchhhhcCccCCcc
Q 045686 593 NLSNTSIGCLPTAIKRLIKLKVLLLDGIQCHLSIPEGVISSLSSLQVFSCFSTELVELIDPLFNETAILDELNCLEHLND 672 (885)
Q Consensus 593 ~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~ 672 (885)
++++|.+..+| .++++++|++|++++|. +..+|.. .++|++|++++|.+.. +..+..+++|+.
T Consensus 179 ~L~~n~l~~l~-~~~~l~~L~~L~l~~N~-l~~l~~~----~~~L~~L~l~~n~l~~-----------lp~~~~l~~L~~ 241 (454)
T 1jl5_A 179 AAGNNQLEELP-ELQNLPFLTAIYADNNS-LKKLPDL----PLSLESIVAGNNILEE-----------LPELQNLPFLTT 241 (454)
T ss_dssp ECCSSCCSSCC-CCTTCTTCCEEECCSSC-CSSCCCC----CTTCCEEECCSSCCSS-----------CCCCTTCTTCCE
T ss_pred ECcCCcCCcCc-cccCCCCCCEEECCCCc-CCcCCCC----cCcccEEECcCCcCCc-----------ccccCCCCCCCE
Confidence 55555555555 45555556666665554 4444432 1355555555555431 223556777777
Q ss_pred eeEEEechhhHHhhhCCCcccccceeEEeccccccccchhhhhhccceEEeeccCccceeecCCCCCccccccccEEeec
Q 045686 673 LSLTLFSTEAVDKLLNSPKLQRCIRRLTIESSELLSLELGLMLSHLEILRIKCGFMKRLNIDQGLNNRPSFSALRRLSII 752 (885)
Q Consensus 673 L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~l~~L~~L~L~ 752 (885)
|+++.+....++. ..++|+.|++++|.+..++- .+++|+.|+++.|.++.++. ..++|+.|+++
T Consensus 242 L~l~~N~l~~l~~------~~~~L~~L~l~~N~l~~l~~--~~~~L~~L~ls~N~l~~l~~--------~~~~L~~L~l~ 305 (454)
T 1jl5_A 242 IYADNNLLKTLPD------LPPSLEALNVRDNYLTDLPE--LPQSLTFLDVSENIFSGLSE--------LPPNLYYLNAS 305 (454)
T ss_dssp EECCSSCCSSCCS------CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSEESC--------CCTTCCEEECC
T ss_pred EECCCCcCCcccc------cccccCEEECCCCcccccCc--ccCcCCEEECcCCccCcccC--------cCCcCCEEECc
Confidence 7776554332221 22478888888877554331 22678888887777776531 13688888888
Q ss_pred cccCCccccccccCCCccEEeEeccCCchhhhcccccCCCcccccccccceeccccccccccccCCccCCCCccEEeecc
Q 045686 753 LCPDIQNLTCLVHVPSLQFLSLSNCHSLEEIVGTYASGSSESRNYFSNLMAVDLDGLPTLRSICSGTVAFPSLQTLSITG 832 (885)
Q Consensus 753 ~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~p~L~~L~i~~ 832 (885)
+| .++.++.+ .++|+.|++++|. +..++. .+++|++|++++| .+..++. .+++|+.|++++
T Consensus 306 ~N-~l~~i~~~--~~~L~~L~Ls~N~-l~~lp~-----------~~~~L~~L~L~~N-~l~~lp~---~l~~L~~L~L~~ 366 (454)
T 1jl5_A 306 SN-EIRSLCDL--PPSLEELNVSNNK-LIELPA-----------LPPRLERLIASFN-HLAEVPE---LPQNLKQLHVEY 366 (454)
T ss_dssp SS-CCSEECCC--CTTCCEEECCSSC-CSCCCC-----------CCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCS
T ss_pred CC-cCCcccCC--cCcCCEEECCCCc-cccccc-----------cCCcCCEEECCCC-ccccccc---hhhhccEEECCC
Confidence 88 56554321 2589999999874 444422 2689999999986 4666665 478999999999
Q ss_pred CCCCCCcC
Q 045686 833 CPSLKKLP 840 (885)
Q Consensus 833 C~~L~~lp 840 (885)
| .++.+|
T Consensus 367 N-~l~~l~ 373 (454)
T 1jl5_A 367 N-PLREFP 373 (454)
T ss_dssp S-CCSSCC
T ss_pred C-CCCcCC
Confidence 6 555543
No 60
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.78 E-value=1.4e-18 Score=206.08 Aligned_cols=337 Identities=20% Similarity=0.155 Sum_probs=221.2
Q ss_pred CcCCccceEEEecccCcccccccccCCCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCch-hhhcc
Q 045686 508 SFDGWHEAVRLSLWGSSIDFLALVEAPSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPE-EIGRL 586 (885)
Q Consensus 508 ~~~~~~~~~~l~l~~~~i~~~~~~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~-~i~~L 586 (885)
.+.++++++.|++++|.++......+.++++|++|+|++|.++. +|...|.++++|++|+|++| .++.+|. .+++|
T Consensus 71 ~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~--l~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~~~~L 147 (635)
T 4g8a_A 71 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS--LALGAFSGLSSLQKLVAVET-NLASLENFPIGHL 147 (635)
T ss_dssp TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE--ECGGGGTTCTTCCEEECTTS-CCCCSTTCCCTTC
T ss_pred HHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCC--CCHHHhcCCCCCCEEECCCC-cCCCCChhhhhcC
Confidence 46778899999999999988544567889999999999999998 99888999999999999999 8888875 58999
Q ss_pred cccceeeccCCcccc--cChhhhccccccEeecCCcccccccCCcccccCcccce----eccccccccccc---------
Q 045686 587 KNLHHLNLSNTSIGC--LPTAIKRLIKLKVLLLDGIQCHLSIPEGVISSLSSLQV----FSCFSTELVELI--------- 651 (885)
Q Consensus 587 ~~L~~L~Ls~~~i~~--lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~----L~l~~~~~~~~~--------- 651 (885)
++|++|++++|.+.. +|..++.+++|++|++++|. +..++...+..+.+++. ++++.|.+....
T Consensus 148 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~ 226 (635)
T 4g8a_A 148 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRL 226 (635)
T ss_dssp TTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEE
T ss_pred cccCeeccccCccccCCCchhhccchhhhhhcccCcc-ccccccccccchhhhhhhhhhhhcccCcccccCcccccchhh
Confidence 999999999999864 57788999999999999986 44443332333332221 111111100000
Q ss_pred ------------------------------------------------------------------------Ccccc---
Q 045686 652 ------------------------------------------------------------------------DPLFN--- 656 (885)
Q Consensus 652 ------------------------------------------------------------------------~~~~~--- 656 (885)
...+.
T Consensus 227 ~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~ 306 (635)
T 4g8a_A 227 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLT 306 (635)
T ss_dssp EEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGT
T ss_pred hhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhc
Confidence 00000
Q ss_pred ----------------c-------------------------------------ccchhhhcCccCCcceeEEEechhhH
Q 045686 657 ----------------E-------------------------------------TAILDELNCLEHLNDLSLTLFSTEAV 683 (885)
Q Consensus 657 ----------------~-------------------------------------~~~l~~l~~L~~L~~L~l~~~~~~~~ 683 (885)
. .........+++|+.++++.+.....
T Consensus 307 ~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~ 386 (635)
T 4g8a_A 307 NVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFK 386 (635)
T ss_dssp TCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEE
T ss_pred ccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccc
Confidence 0 00000011245566665543321100
Q ss_pred ----HhhhCCC-------------------cccccceeEEeccccccc---cchhhhhhccceEEeeccCccceeecCCC
Q 045686 684 ----DKLLNSP-------------------KLQRCIRRLTIESSELLS---LELGLMLSHLEILRIKCGFMKRLNIDQGL 737 (885)
Q Consensus 684 ----~~l~~~~-------------------~~~~~L~~L~l~~~~~~~---~~l~~~~~~L~~L~l~~~~l~~l~~~~~~ 737 (885)
....... .....|+.+.+..+.... ......+++++.++++.+.+..+.....
T Consensus 387 ~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~- 465 (635)
T 4g8a_A 387 GCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF- 465 (635)
T ss_dssp EECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTT-
T ss_pred cccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccccccccccccccccccccc-
Confidence 0011111 011244455554443111 1111112667777777666665544333
Q ss_pred CCccccccccEEeeccccCCccc--cccccCCCccEEeEeccCCchhhhcccccCCCcccccccccceeccccccccccc
Q 045686 738 NNRPSFSALRRLSIILCPDIQNL--TCLVHVPSLQFLSLSNCHSLEEIVGTYASGSSESRNYFSNLMAVDLDGLPTLRSI 815 (885)
Q Consensus 738 ~~~~~l~~L~~L~L~~c~~l~~l--~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 815 (885)
..+++|+.|++++|.....+ ..+..+++|+.|+|++| .++.++. ..+..+++|++|+|+++ .+..+
T Consensus 466 ---~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N-~L~~l~~-------~~f~~l~~L~~L~Ls~N-~l~~l 533 (635)
T 4g8a_A 466 ---NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSP-------TAFNSLSSLQVLNMSHN-NFFSL 533 (635)
T ss_dssp ---TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECT-------TTTTTCTTCCEEECTTS-CCCBC
T ss_pred ---ccchhhhhhhhhhcccccccCchhhhhccccCEEECCCC-ccCCcCh-------HHHcCCCCCCEEECCCC-cCCCC
Confidence 24789999999998655543 35788999999999999 4665543 46788999999999996 45555
Q ss_pred c-CCccCCCCccEEeeccCCCCCCcCCCCcccc-CCceEEEccHhhhhh
Q 045686 816 C-SGTVAFPSLQTLSITGCPSLKKLPFNSESAR-RSLISVRASAEWWNQ 862 (885)
Q Consensus 816 ~-~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~-~~l~~i~~~~~~~~~ 862 (885)
+ ..+..+++|+.|+++++ +|+.+|....... .+|+.+....+.|.|
T Consensus 534 ~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 534 DTFPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp CCGGGTTCTTCCEEECTTS-CCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred ChhHHhCCCCCCEEECCCC-cCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 4 45678999999999995 7888877655544 689999888777766
No 61
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.77 E-value=1.4e-18 Score=189.66 Aligned_cols=271 Identities=19% Similarity=0.188 Sum_probs=167.7
Q ss_pred CchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCch-hhhcccccceeeccCCcccccCh-hhhcccccc
Q 045686 536 CPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPE-EIGRLKNLHHLNLSNTSIGCLPT-AIKRLIKLK 613 (885)
Q Consensus 536 ~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~-~i~~L~~L~~L~Ls~~~i~~lp~-~i~~L~~L~ 613 (885)
|+.....+++++.++. +|..++ ++|++|++++| .++.+|. .++++++|++|++++|.+..++. .+.++++|+
T Consensus 30 C~~~~~c~~~~~~l~~--iP~~~~---~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (353)
T 2z80_A 30 CDRNGICKGSSGSLNS--IPSGLT---EAVKSLDLSNN-RITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE 103 (353)
T ss_dssp ECTTSEEECCSTTCSS--CCTTCC---TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCCeEeeCCCCCccc--cccccc---ccCcEEECCCC-cCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCC
Confidence 3333334556677777 887643 58999999999 7888776 79999999999999999988854 599999999
Q ss_pred EeecCCcccccccCCcccccCcccceecccccccccccCcccccccchhhhcCccCCcceeEEEec-hhhHHhhhCCCcc
Q 045686 614 VLLLDGIQCHLSIPEGVISSLSSLQVFSCFSTELVELIDPLFNETAILDELNCLEHLNDLSLTLFS-TEAVDKLLNSPKL 692 (885)
Q Consensus 614 ~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~L~l~~~~-~~~~~~l~~~~~~ 692 (885)
+|++++|. +..+|...++++++|++|++++|.+.+. + ....+..+++|+.|++..+. ...+.. .....
T Consensus 104 ~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~l-~-------~~~~~~~l~~L~~L~l~~n~~~~~~~~--~~~~~ 172 (353)
T 2z80_A 104 HLDLSYNY-LSNLSSSWFKPLSSLTFLNLLGNPYKTL-G-------ETSLFSHLTKLQILRVGNMDTFTKIQR--KDFAG 172 (353)
T ss_dssp EEECCSSC-CSSCCHHHHTTCTTCSEEECTTCCCSSS-C-------SSCSCTTCTTCCEEEEEESSSCCEECT--TTTTT
T ss_pred EEECCCCc-CCcCCHhHhCCCccCCEEECCCCCCccc-C-------chhhhccCCCCcEEECCCCccccccCH--HHccC
Confidence 99999997 7888877689999999999999987641 1 11245667788888887652 211110 00111
Q ss_pred cccceeEEeccccccccc---hhhhhhccceEEeeccCccceeecCCCCCccccccccEEeeccccCCcccc-----ccc
Q 045686 693 QRCIRRLTIESSELLSLE---LGLMLSHLEILRIKCGFMKRLNIDQGLNNRPSFSALRRLSIILCPDIQNLT-----CLV 764 (885)
Q Consensus 693 ~~~L~~L~l~~~~~~~~~---l~~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~-----~l~ 764 (885)
.++|+.|++++|.+.... +..+ ++|+.|+++.|.+..++.... ..+++|+.|++++| .++.++ ...
T Consensus 173 l~~L~~L~l~~n~l~~~~~~~l~~l-~~L~~L~l~~n~l~~~~~~~~----~~~~~L~~L~L~~n-~l~~~~~~~l~~~~ 246 (353)
T 2z80_A 173 LTFLEELEIDASDLQSYEPKSLKSI-QNVSHLILHMKQHILLLEIFV----DVTSSVECLELRDT-DLDTFHFSELSTGE 246 (353)
T ss_dssp CCEEEEEEEEETTCCEECTTTTTTC-SEEEEEEEECSCSTTHHHHHH----HHTTTEEEEEEESC-BCTTCCCC------
T ss_pred CCCCCEEECCCCCcCccCHHHHhcc-ccCCeecCCCCccccchhhhh----hhcccccEEECCCC-cccccccccccccc
Confidence 235666677666633321 2222 566666666555554433221 12466666666666 344322 122
Q ss_pred cCCCccEEeEeccCCchhhhcccccCCCcccccccccceeccccccccccccCCc-cCCCCccEEeeccCC
Q 045686 765 HVPSLQFLSLSNCHSLEEIVGTYASGSSESRNYFSNLMAVDLDGLPTLRSICSGT-VAFPSLQTLSITGCP 834 (885)
Q Consensus 765 ~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~p~L~~L~i~~C~ 834 (885)
..+.++.++++++.. ..... ...+..+..+++|++|++++| .+..++... ..+++|++|++++|+
T Consensus 247 ~~~~l~~l~L~~~~l-~~~~l---~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 247 TNSLIKKFTFRNVKI-TDESL---FQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp CCCCCCEEEEESCBC-CHHHH---HHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccchhhccccccccc-cCcch---hhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCC
Confidence 345566666665532 11100 000123445666666776664 344555543 556666666666654
No 62
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.76 E-value=9.1e-19 Score=187.33 Aligned_cols=248 Identities=18% Similarity=0.174 Sum_probs=190.1
Q ss_pred cceEEEecccCcccc--cccccCCCCchhHHHHHhh-cCCccCCCCchhhhcCCcccEEecCCCCCCC-cCchhhhcccc
Q 045686 513 HEAVRLSLWGSSIDF--LALVEAPSCPQVRTLLARL-TMLHTLPIPSRFFDSMDALEVLDLSYNLDLN-QLPEEIGRLKN 588 (885)
Q Consensus 513 ~~~~~l~l~~~~i~~--~~~~~~~~~~~Lr~L~l~~-~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~-~lp~~i~~L~~ 588 (885)
.+++.|++.+|.+.. .....+..+++|++|++++ |.+.. .+|.. |..+++|++|+|++| .+. .+|..++++++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~-~~p~~-l~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~ 126 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG-PIPPA-IAKLTQLHYLYITHT-NVSGAIPDFLSQIKT 126 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEES-CCCGG-GGGCTTCSEEEEEEE-CCEEECCGGGGGCTT
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccc-cCChh-HhcCCCCCEEECcCC-eeCCcCCHHHhCCCC
Confidence 379999999998875 3345678899999999995 77764 25555 899999999999999 665 89999999999
Q ss_pred cceeeccCCccc-ccChhhhccccccEeecCCcccccccCCcccccCc-ccceecccccccccccCcccccccchhhhcC
Q 045686 589 LHHLNLSNTSIG-CLPTAIKRLIKLKVLLLDGIQCHLSIPEGVISSLS-SLQVFSCFSTELVELIDPLFNETAILDELNC 666 (885)
Q Consensus 589 L~~L~Ls~~~i~-~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~-~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~ 666 (885)
|++|++++|.+. .+|..+.++++|++|++++|.....+|.. +.+++ +|++|++++|.+.+.+| ..+..
T Consensus 127 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~l~~~~~---------~~~~~ 196 (313)
T 1ogq_A 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLTGKIP---------PTFAN 196 (313)
T ss_dssp CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEEEECC---------GGGGG
T ss_pred CCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCCeeeccCC---------hHHhC
Confidence 999999999996 89999999999999999999854588887 88898 99999999998875432 22222
Q ss_pred ccCCcceeEEEechhhHHhhhCCCcccccceeEEecccccccc---chhhhhhccceEEeeccCccceeecCCCCCcccc
Q 045686 667 LEHLNDLSLTLFSTEAVDKLLNSPKLQRCIRRLTIESSELLSL---ELGLMLSHLEILRIKCGFMKRLNIDQGLNNRPSF 743 (885)
Q Consensus 667 L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~---~l~~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~l 743 (885)
++ | +.|++++|.+... .+..+ ++|+.|+++.|.+........ .+
T Consensus 197 l~-L--------------------------~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~-----~l 243 (313)
T 1ogq_A 197 LN-L--------------------------AFVDLSRNMLEGDASVLFGSD-KNTQKIHLAKNSLAFDLGKVG-----LS 243 (313)
T ss_dssp CC-C--------------------------SEEECCSSEEEECCGGGCCTT-SCCSEEECCSSEECCBGGGCC-----CC
T ss_pred Cc-c--------------------------cEEECcCCcccCcCCHHHhcC-CCCCEEECCCCceeeecCccc-----cc
Confidence 22 3 4445555442211 12233 888999998777765443332 37
Q ss_pred ccccEEeeccccCCc-ccc-ccccCCCccEEeEeccCCchhhhcccccCCCcccccccccceecccccccccccc
Q 045686 744 SALRRLSIILCPDIQ-NLT-CLVHVPSLQFLSLSNCHSLEEIVGTYASGSSESRNYFSNLMAVDLDGLPTLRSIC 816 (885)
Q Consensus 744 ~~L~~L~L~~c~~l~-~l~-~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 816 (885)
++|+.|++++| .++ .+| .+..+++|++|+|++|.....++ ....+++|+.|++++++.+...|
T Consensus 244 ~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip---------~~~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 244 KNLNGLDLRNN-RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP---------QGGNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp TTCCEEECCSS-CCEECCCGGGGGCTTCCEEECCSSEEEEECC---------CSTTGGGSCGGGTCSSSEEESTT
T ss_pred CCCCEEECcCC-cccCcCChHHhcCcCCCEEECcCCcccccCC---------CCccccccChHHhcCCCCccCCC
Confidence 99999999999 565 444 68899999999999996443443 23789999999999998776543
No 63
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.74 E-value=3.2e-18 Score=180.76 Aligned_cols=216 Identities=19% Similarity=0.228 Sum_probs=137.8
Q ss_pred EEEecccCcccccccccCCCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcC-chhhhcccccceeec
Q 045686 516 VRLSLWGSSIDFLALVEAPSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQL-PEEIGRLKNLHHLNL 594 (885)
Q Consensus 516 ~~l~l~~~~i~~~~~~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~l-p~~i~~L~~L~~L~L 594 (885)
+.++..++.+.. +|. .-.++|++|++++|.+.. ++...|..+++|++|+|++| .++.+ |..++++++|++|++
T Consensus 14 ~~~~c~~~~l~~--ip~-~~~~~l~~L~l~~n~i~~--~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l 87 (285)
T 1ozn_A 14 VTTSCPQQGLQA--VPV-GIPAASQRIFLHGNRISH--VPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDL 87 (285)
T ss_dssp CEEECCSSCCSS--CCT-TCCTTCSEEECTTSCCCE--ECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEEC
T ss_pred eEEEcCcCCccc--CCc-CCCCCceEEEeeCCcCCc--cCHHHcccCCCCCEEECCCC-ccceeCHhhcCCccCCCEEeC
Confidence 344555555554 222 124577777777777776 66666777778888888877 55555 666777778888888
Q ss_pred cCCc-cccc-ChhhhccccccEeecCCcccccccCCcccccCcccceecccccccccccCcccccccchhhhcCccCCcc
Q 045686 595 SNTS-IGCL-PTAIKRLIKLKVLLLDGIQCHLSIPEGVISSLSSLQVFSCFSTELVELIDPLFNETAILDELNCLEHLND 672 (885)
Q Consensus 595 s~~~-i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~ 672 (885)
++|. +..+ |..+..+++|++|++++|. +..++...+.++++|++|++++|.+.+. ....+..+++
T Consensus 88 ~~n~~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~---------~~~~~~~l~~--- 154 (285)
T 1ozn_A 88 SDNAQLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNALQAL---------PDDTFRDLGN--- 154 (285)
T ss_dssp CSCTTCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCC---------CTTTTTTCTT---
T ss_pred CCCCCccccCHHHhcCCcCCCEEECCCCc-CCEECHhHhhCCcCCCEEECCCCccccc---------CHhHhccCCC---
Confidence 8775 7666 4557777788888888776 5555444477777888888877766431 1111233333
Q ss_pred eeEEEechhhHHhhhCCCcccccceeEEeccccccccc---hhhhhhccceEEeeccCccceeecCCCCCccccccccEE
Q 045686 673 LSLTLFSTEAVDKLLNSPKLQRCIRRLTIESSELLSLE---LGLMLSHLEILRIKCGFMKRLNIDQGLNNRPSFSALRRL 749 (885)
Q Consensus 673 L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~---l~~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~l~~L~~L 749 (885)
|+.|++++|.+..+. +..+ ++|+.|+++.|.+..+....+. .+++|+.|
T Consensus 155 -----------------------L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~----~l~~L~~L 206 (285)
T 1ozn_A 155 -----------------------LTHLFLHGNRISSVPERAFRGL-HSLDRLLLHQNRVAHVHPHAFR----DLGRLMTL 206 (285)
T ss_dssp -----------------------CCEEECCSSCCCEECTTTTTTC-TTCCEEECCSSCCCEECTTTTT----TCTTCCEE
T ss_pred -----------------------ccEEECCCCcccccCHHHhcCc-cccCEEECCCCcccccCHhHcc----CcccccEe
Confidence 334444444432222 2222 7778888877777766444332 37888888
Q ss_pred eeccccCCcccc--ccccCCCccEEeEeccCC
Q 045686 750 SIILCPDIQNLT--CLVHVPSLQFLSLSNCHS 779 (885)
Q Consensus 750 ~L~~c~~l~~l~--~l~~l~~L~~L~L~~~~~ 779 (885)
++++| .++.++ .+..+++|+.|++++|+.
T Consensus 207 ~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 207 YLFAN-NLSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp ECCSS-CCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred eCCCC-cCCcCCHHHcccCcccCEEeccCCCc
Confidence 88888 566654 367888888888888864
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.74 E-value=2.6e-18 Score=184.28 Aligned_cols=256 Identities=17% Similarity=0.167 Sum_probs=164.2
Q ss_pred HhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCc-hhhhcccccceeeccCCcccccChhhhccccccEeecCCccc
Q 045686 544 ARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLP-EEIGRLKNLHHLNLSNTSIGCLPTAIKRLIKLKVLLLDGIQC 622 (885)
Q Consensus 544 l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp-~~i~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~ 622 (885)
++.+.+.. .+..++..+++|++|+|++| .++.++ ..++++++|++|++++|.+..++. +..+++|++|++++|.
T Consensus 17 ls~~~l~~--~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~- 91 (317)
T 3o53_A 17 VTDSSLKQ--ALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY- 91 (317)
T ss_dssp CCTTTHHH--HHHHHHTTGGGCSEEECTTS-CCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSE-
T ss_pred ccccchhh--hHHHHhccCCCCCEEECcCC-ccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCc-
Confidence 33444444 45555777889999999999 676664 689999999999999999987775 8999999999999997
Q ss_pred ccccCCcccccCcccceecccccccccccCcccccccchhhhcCccCCcceeEEEechhhHHhhhCCCcccccceeEEec
Q 045686 623 HLSIPEGVISSLSSLQVFSCFSTELVELIDPLFNETAILDELNCLEHLNDLSLTLFSTEAVDKLLNSPKLQRCIRRLTIE 702 (885)
Q Consensus 623 l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~ 702 (885)
+..+| .+++|++|++++|.+.+.. ...+++|+.|+++.+....+... .....++|+.|+++
T Consensus 92 l~~l~-----~~~~L~~L~l~~n~l~~~~------------~~~~~~L~~L~l~~N~l~~~~~~--~~~~l~~L~~L~Ls 152 (317)
T 3o53_A 92 VQELL-----VGPSIETLHAANNNISRVS------------CSRGQGKKNIYLANNKITMLRDL--DEGCRSRVQYLDLK 152 (317)
T ss_dssp EEEEE-----ECTTCCEEECCSSCCSEEE------------ECCCSSCEEEECCSSCCCSGGGB--CTGGGSSEEEEECT
T ss_pred ccccc-----CCCCcCEEECCCCccCCcC------------ccccCCCCEEECCCCCCCCccch--hhhccCCCCEEECC
Confidence 66555 3489999999999886521 11245566666655543332211 11112367777777
Q ss_pred cccccccc---hhhhhhccceEEeeccCccceeecCCCCCccccccccEEeeccccCCccc-cccccCCCccEEeEeccC
Q 045686 703 SSELLSLE---LGLMLSHLEILRIKCGFMKRLNIDQGLNNRPSFSALRRLSIILCPDIQNL-TCLVHVPSLQFLSLSNCH 778 (885)
Q Consensus 703 ~~~~~~~~---l~~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~l-~~l~~l~~L~~L~L~~~~ 778 (885)
+|.+.... +...+++|+.|+++.|.++.++... .+++|+.|++++| .++.+ +.+..+++|+.|++++|
T Consensus 153 ~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~------~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~L~~N- 224 (317)
T 3o53_A 153 LNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV------VFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNN- 224 (317)
T ss_dssp TSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCC------CCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTS-
T ss_pred CCCCCcccHHHHhhccCcCCEEECCCCcCccccccc------ccccCCEEECCCC-cCCcchhhhcccCcccEEECcCC-
Confidence 77644432 2222366777777666666654322 1567777777776 45554 34566677777777776
Q ss_pred CchhhhcccccCCCcccccccccceecccccccc-ccccCCccCCCCccEEeeccCCCCCCc
Q 045686 779 SLEEIVGTYASGSSESRNYFSNLMAVDLDGLPTL-RSICSGTVAFPSLQTLSITGCPSLKKL 839 (885)
Q Consensus 779 ~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l-~~~~~~~~~~p~L~~L~i~~C~~L~~l 839 (885)
.++.++. .+..+++|+.|++++++.. ..++..+..+++|+.|++.+|+.++..
T Consensus 225 ~l~~l~~--------~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 225 KLVLIEK--------ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp CCCEECT--------TCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSS
T ss_pred cccchhh--------HhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCC
Confidence 3444432 3455667777777766544 233344455666777776665555543
No 65
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.74 E-value=8.3e-18 Score=179.63 Aligned_cols=238 Identities=20% Similarity=0.236 Sum_probs=175.2
Q ss_pred HHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCchh-hhcccccceeeccCCccccc---ChhhhccccccEee
Q 045686 541 TLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPEE-IGRLKNLHHLNLSNTSIGCL---PTAIKRLIKLKVLL 616 (885)
Q Consensus 541 ~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~-i~~L~~L~~L~Ls~~~i~~l---p~~i~~L~~L~~L~ 616 (885)
.++++++.++. +|..+ .++|++|+|++| .++.+|.. ++++++|++|++++|.+..+ |..+..+++|++|+
T Consensus 11 ~l~c~~~~l~~--ip~~~---~~~l~~L~L~~n-~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ 84 (306)
T 2z66_A 11 EIRCNSKGLTS--VPTGI---PSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD 84 (306)
T ss_dssp EEECCSSCCSS--CCSCC---CTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEE
T ss_pred EEEcCCCCccc--CCCCC---CCCCCEEECCCC-ccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEE
Confidence 34556667777 88753 368999999999 88888876 68999999999999998765 67888999999999
Q ss_pred cCCcccccccCCcccccCcccceecccccccccccCcccccccchhhhcCccCCcceeEEEechhhHHhhhCCCcccccc
Q 045686 617 LDGIQCHLSIPEGVISSLSSLQVFSCFSTELVELIDPLFNETAILDELNCLEHLNDLSLTLFSTEAVDKLLNSPKLQRCI 696 (885)
Q Consensus 617 l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L 696 (885)
+++|. +..+|.. +..+++|++|++++|.+.+. .....+..+++ |
T Consensus 85 Ls~n~-i~~l~~~-~~~l~~L~~L~l~~n~l~~~--------~~~~~~~~l~~--------------------------L 128 (306)
T 2z66_A 85 LSFNG-VITMSSN-FLGLEQLEHLDFQHSNLKQM--------SEFSVFLSLRN--------------------------L 128 (306)
T ss_dssp CCSCS-EEEEEEE-EETCTTCCEEECTTSEEESS--------TTTTTTTTCTT--------------------------C
T ss_pred CCCCc-cccChhh-cCCCCCCCEEECCCCccccc--------ccchhhhhccC--------------------------C
Confidence 99997 7788887 89999999999999987642 11123333443 4
Q ss_pred eeEEeccccccccc---hhhhhhccceEEeeccCccc-eeecCCCCCccccccccEEeeccccCCccc--cccccCCCcc
Q 045686 697 RRLTIESSELLSLE---LGLMLSHLEILRIKCGFMKR-LNIDQGLNNRPSFSALRRLSIILCPDIQNL--TCLVHVPSLQ 770 (885)
Q Consensus 697 ~~L~l~~~~~~~~~---l~~~~~~L~~L~l~~~~l~~-l~~~~~~~~~~~l~~L~~L~L~~c~~l~~l--~~l~~l~~L~ 770 (885)
+.|++++|.+.... +..+ ++|+.|+++.|.+.. .....+ ..+++|+.|++++| .++.+ ..+..+++|+
T Consensus 129 ~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~----~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~ 202 (306)
T 2z66_A 129 IYLDISHTHTRVAFNGIFNGL-SSLEVLKMAGNSFQENFLPDIF----TELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQ 202 (306)
T ss_dssp CEEECTTSCCEECSTTTTTTC-TTCCEEECTTCEEGGGEECSCC----TTCTTCCEEECTTS-CCCEECTTTTTTCTTCC
T ss_pred CEEECCCCcCCccchhhcccC-cCCCEEECCCCccccccchhHH----hhCcCCCEEECCCC-CcCCcCHHHhcCCCCCC
Confidence 45555555532221 2233 889999997777765 222222 23789999999999 56665 3677899999
Q ss_pred EEeEeccCCchhhhcccccCCCcccccccccceeccccccccccccCCccCCC-CccEEeeccCC
Q 045686 771 FLSLSNCHSLEEIVGTYASGSSESRNYFSNLMAVDLDGLPTLRSICSGTVAFP-SLQTLSITGCP 834 (885)
Q Consensus 771 ~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~p-~L~~L~i~~C~ 834 (885)
.|++++|. +..++. ..+..+++|++|+++++......+..+..+| +|+.|++++++
T Consensus 203 ~L~L~~N~-l~~~~~-------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 203 VLNMSHNN-FFSLDT-------FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp EEECTTSC-CSBCCS-------GGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred EEECCCCc-cCccCh-------hhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 99999985 444432 3567789999999999865555566667775 89999998864
No 66
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.74 E-value=5.2e-19 Score=201.01 Aligned_cols=104 Identities=18% Similarity=0.122 Sum_probs=75.3
Q ss_pred CCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCchhhhcccccceeeccCCcccccChhhhcccccc
Q 045686 534 PSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPEEIGRLKNLHHLNLSNTSIGCLPTAIKRLIKLK 613 (885)
Q Consensus 534 ~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~ 613 (885)
..+++|++|++++|.+.. +++..|..+++|++|+|++| .++..+. ++.+++|++|+|++|.|..+|. .++|+
T Consensus 31 ~~~~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~----~~~L~ 102 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQ--ISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIE 102 (487)
T ss_dssp TTGGGCCEEECCSSCCCC--CCGGGGTTCTTCCEEECTTS-CCEEEEE-CTTCTTCCEEECCSSEEEEEEE----CTTCC
T ss_pred ccCCCccEEEeeCCcCCC--CCHHHHhCCCCCCEEEeeCC-CCCCCcc-cccCCCCCEEEecCCcCCCCCC----CCCcC
Confidence 345678888888887776 76666788888888888888 6665544 7778888888888887777663 37788
Q ss_pred EeecCCcccccccCCcccccCcccceeccccccccc
Q 045686 614 VLLLDGIQCHLSIPEGVISSLSSLQVFSCFSTELVE 649 (885)
Q Consensus 614 ~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~ 649 (885)
+|++++|. +..+|.. .+++|++|++++|.+.+
T Consensus 103 ~L~L~~N~-l~~~~~~---~l~~L~~L~L~~N~l~~ 134 (487)
T 3oja_A 103 TLHAANNN-ISRVSCS---RGQGKKNIYLANNKITM 134 (487)
T ss_dssp EEECCSSC-CCCEEEC---CCSSCEEEECCSSCCCS
T ss_pred EEECcCCc-CCCCCcc---ccCCCCEEECCCCCCCC
Confidence 88888876 5555533 45778888888877654
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.73 E-value=2.7e-19 Score=191.52 Aligned_cols=221 Identities=18% Similarity=0.217 Sum_probs=134.8
Q ss_pred hHHHHHhhcCCccCCCCchhh------hcCCcccEEecCCCCCCC-cCchhh--hcccccceeeccCCcccccChhhhcc
Q 045686 539 VRTLLARLTMLHTLPIPSRFF------DSMDALEVLDLSYNLDLN-QLPEEI--GRLKNLHHLNLSNTSIGCLPTAIKRL 609 (885)
Q Consensus 539 Lr~L~l~~~~l~~~~~~~~~~------~~l~~L~~L~Ls~~~~i~-~lp~~i--~~L~~L~~L~Ls~~~i~~lp~~i~~L 609 (885)
|+.|++++|.+....+|..+. ..+++|++|+|++| .++ .+|..+ +.+++|++|++++|.+..+|..++.+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l 143 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENL-EVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAEL 143 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEE-BCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCC-cccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHH
Confidence 666667666654433444321 14677777777777 443 566655 66777777777777776666666666
Q ss_pred -----ccccEeecCCcccccccCCcccccCcccceecccccccccccCcccccccchhhh--cCccCCcceeEEEechhh
Q 045686 610 -----IKLKVLLLDGIQCHLSIPEGVISSLSSLQVFSCFSTELVELIDPLFNETAILDEL--NCLEHLNDLSLTLFSTEA 682 (885)
Q Consensus 610 -----~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l--~~L~~L~~L~l~~~~~~~ 682 (885)
++|++|++++|. +..++...++++++|++|++++|.+.+. ...+..+ ..++
T Consensus 144 ~~~~~~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-------~~~~~~~~~~~l~-------------- 201 (312)
T 1wwl_A 144 QQWLKPGLKVLSIAQAH-SLNFSCEQVRVFPALSTLDLSDNPELGE-------RGLISALCPLKFP-------------- 201 (312)
T ss_dssp HTTCCTTCCEEEEESCS-CCCCCTTTCCCCSSCCEEECCSCTTCHH-------HHHHHHSCTTSCT--------------
T ss_pred HHhhcCCCcEEEeeCCC-CccchHHHhccCCCCCEEECCCCCcCcc-------hHHHHHHHhccCC--------------
Confidence 677777777775 5555543467777777777777665431 0011111 2222
Q ss_pred HHhhhCCCcccccceeEEeccccccccc-----hhhhhhccceEEeeccCccceee-cCCCCCccccccccEEeeccccC
Q 045686 683 VDKLLNSPKLQRCIRRLTIESSELLSLE-----LGLMLSHLEILRIKCGFMKRLNI-DQGLNNRPSFSALRRLSIILCPD 756 (885)
Q Consensus 683 ~~~l~~~~~~~~~L~~L~l~~~~~~~~~-----l~~~~~~L~~L~l~~~~l~~l~~-~~~~~~~~~l~~L~~L~L~~c~~ 756 (885)
+|+.|++++|.+..+. +...+++|+.|+++.|.++.... ... ..+++|+.|++++| .
T Consensus 202 ------------~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~----~~l~~L~~L~Ls~N-~ 264 (312)
T 1wwl_A 202 ------------TLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSC----DWPSQLNSLNLSFT-G 264 (312)
T ss_dssp ------------TCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCC----CCCTTCCEEECTTS-C
T ss_pred ------------CCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhh----hhcCCCCEEECCCC-c
Confidence 5666667666644322 11122688888888787776442 211 12678888888888 5
Q ss_pred CccccccccCCCccEEeEeccCCchhhhcccccCCCcccccccccceecccccc
Q 045686 757 IQNLTCLVHVPSLQFLSLSNCHSLEEIVGTYASGSSESRNYFSNLMAVDLDGLP 810 (885)
Q Consensus 757 l~~l~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~ 810 (885)
++.+|.-.. ++|++|++++|. ++.+ ..+..+++|++|++++++
T Consensus 265 l~~ip~~~~-~~L~~L~Ls~N~-l~~~---------p~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 265 LKQVPKGLP-AKLSVLDLSYNR-LDRN---------PSPDELPQVGNLSLKGNP 307 (312)
T ss_dssp CSSCCSSCC-SEEEEEECCSSC-CCSC---------CCTTTSCEEEEEECTTCT
T ss_pred cChhhhhcc-CCceEEECCCCC-CCCC---------hhHhhCCCCCEEeccCCC
Confidence 766653222 788889988884 4443 126678888888888864
No 68
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.70 E-value=3.9e-17 Score=174.12 Aligned_cols=84 Identities=24% Similarity=0.328 Sum_probs=46.3
Q ss_pred hhcCCcccEEecCCCCCCCcCchhhhcccccceeeccCCcccccChhhhccccccEeecCCcccccccCCcccccCcccc
Q 045686 559 FDSMDALEVLDLSYNLDLNQLPEEIGRLKNLHHLNLSNTSIGCLPTAIKRLIKLKVLLLDGIQCHLSIPEGVISSLSSLQ 638 (885)
Q Consensus 559 ~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~ 638 (885)
+..+++|++|++++| .++.+| .+..+++|++|++++|.+..+|. +..+++|++|++++|. +..+|. +..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~-~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~~--~~~l~~L~ 110 (308)
T 1h6u_A 37 QADLDGITTLSAFGT-GVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVSA--IAGLQSIK 110 (308)
T ss_dssp HHHHHTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCGG--GTTCTTCC
T ss_pred HHHcCCcCEEEeeCC-CccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-CCCchh--hcCCCCCC
Confidence 344555555555555 555554 35555555556655555555554 5555555566555554 444442 55555555
Q ss_pred eecccccccc
Q 045686 639 VFSCFSTELV 648 (885)
Q Consensus 639 ~L~l~~~~~~ 648 (885)
+|++++|.+.
T Consensus 111 ~L~l~~n~l~ 120 (308)
T 1h6u_A 111 TLDLTSTQIT 120 (308)
T ss_dssp EEECTTSCCC
T ss_pred EEECCCCCCC
Confidence 5555555543
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.70 E-value=8.4e-17 Score=182.79 Aligned_cols=233 Identities=18% Similarity=0.187 Sum_probs=142.1
Q ss_pred cCCcccEEecCCCCCCCcC-chhhhcccccceeeccCCcccccChhhhccccccEeecCCcccccccCCcccccCcccce
Q 045686 561 SMDALEVLDLSYNLDLNQL-PEEIGRLKNLHHLNLSNTSIGCLPTAIKRLIKLKVLLLDGIQCHLSIPEGVISSLSSLQV 639 (885)
Q Consensus 561 ~l~~L~~L~Ls~~~~i~~l-p~~i~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~ 639 (885)
.+++|++|+|++| .++.+ |..++++++|++|+|++|.+..++. ++.+++|++|++++|. +..+|. .++|++
T Consensus 32 ~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~-----~~~L~~ 103 (487)
T 3oja_A 32 SAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELLV-----GPSIET 103 (487)
T ss_dssp TGGGCCEEECCSS-CCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE-EEEEEE-----CTTCCE
T ss_pred cCCCccEEEeeCC-cCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc-CCCCCC-----CCCcCE
Confidence 3458999999999 67665 5789999999999999999987665 9999999999999996 666653 389999
Q ss_pred ecccccccccccCcccccccchhhhcCccCCcceeEEEechhhHHhhhCCCcccccceeEEeccccccccc---hhhhhh
Q 045686 640 FSCFSTELVELIDPLFNETAILDELNCLEHLNDLSLTLFSTEAVDKLLNSPKLQRCIRRLTIESSELLSLE---LGLMLS 716 (885)
Q Consensus 640 L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~---l~~~~~ 716 (885)
|++++|.+.+..+ ..+++|+.|+++.+........ .....++|+.|++++|.+.... +...++
T Consensus 104 L~L~~N~l~~~~~------------~~l~~L~~L~L~~N~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~ 169 (487)
T 3oja_A 104 LHAANNNISRVSC------------SRGQGKKNIYLANNKITMLRDL--DEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169 (487)
T ss_dssp EECCSSCCCCEEE------------CCCSSCEEEECCSSCCCSGGGB--CGGGGSSEEEEECTTSCCCEEEGGGGGGGTT
T ss_pred EECcCCcCCCCCc------------cccCCCCEEECCCCCCCCCCch--hhcCCCCCCEEECCCCCCCCcChHHHhhhCC
Confidence 9999998865211 1234566666554433222110 0111235666666666543322 221225
Q ss_pred ccceEEeeccCccceeecCCCCCccccccccEEeeccccCCccc-cccccCCCccEEeEeccCCchhhhcccccCCCccc
Q 045686 717 HLEILRIKCGFMKRLNIDQGLNNRPSFSALRRLSIILCPDIQNL-TCLVHVPSLQFLSLSNCHSLEEIVGTYASGSSESR 795 (885)
Q Consensus 717 ~L~~L~l~~~~l~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~l-~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~ 795 (885)
+|+.|+++.|.++.++... .+++|+.|+|++| .++.+ +.++.+++|+.|+|++|. +..++ ..+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~------~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~Ls~N~-l~~lp--------~~l 233 (487)
T 3oja_A 170 TLEHLNLQYNFIYDVKGQV------VFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNK-LVLIE--------KAL 233 (487)
T ss_dssp TCCEEECTTSCCCEEECCC------CCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTSC-CCEEC--------TTC
T ss_pred cccEEecCCCccccccccc------cCCCCCEEECCCC-CCCCCCHhHcCCCCccEEEecCCc-Ccccc--------hhh
Confidence 6666666666665553222 1566666666666 34443 345566666666666653 33332 234
Q ss_pred ccccccceecccccccc-ccccCCccCCCCccEEeec
Q 045686 796 NYFSNLMAVDLDGLPTL-RSICSGTVAFPSLQTLSIT 831 (885)
Q Consensus 796 ~~~~~L~~L~l~~~~~l-~~~~~~~~~~p~L~~L~i~ 831 (885)
..+++|+.|++++|+.. ..++..+..++.|+.|++.
T Consensus 234 ~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 234 RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred ccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 45566666666665443 1233333445555555554
No 70
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.69 E-value=5.7e-17 Score=171.12 Aligned_cols=103 Identities=20% Similarity=0.182 Sum_probs=80.2
Q ss_pred HHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCc-hhhhcccccceeeccCCccccc-ChhhhccccccEeecC
Q 045686 541 TLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLP-EEIGRLKNLHHLNLSNTSIGCL-PTAIKRLIKLKVLLLD 618 (885)
Q Consensus 541 ~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp-~~i~~L~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~l~ 618 (885)
+++++++.++. +|..+ .+.|++|++++| .++.+| ..++++++|++|++++|.+..+ |..+.++++|++|+++
T Consensus 15 ~~~c~~~~l~~--ip~~~---~~~l~~L~l~~n-~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 88 (285)
T 1ozn_A 15 TTSCPQQGLQA--VPVGI---PAASQRIFLHGN-RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88 (285)
T ss_dssp EEECCSSCCSS--CCTTC---CTTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred EEEcCcCCccc--CCcCC---CCCceEEEeeCC-cCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCC
Confidence 44556666776 77542 468899999998 777666 4688899999999999988777 5668889999999999
Q ss_pred CcccccccCCcccccCcccceeccccccccc
Q 045686 619 GIQCHLSIPEGVISSLSSLQVFSCFSTELVE 649 (885)
Q Consensus 619 ~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~ 649 (885)
+|..+..++...+..+++|++|++++|.+.+
T Consensus 89 ~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 119 (285)
T 1ozn_A 89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQE 119 (285)
T ss_dssp SCTTCCCCCTTTTTTCTTCCEEECTTSCCCC
T ss_pred CCCCccccCHHHhcCCcCCCEEECCCCcCCE
Confidence 9865777755558889999999998887654
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.69 E-value=9.1e-18 Score=179.61 Aligned_cols=241 Identities=19% Similarity=0.212 Sum_probs=173.7
Q ss_pred CCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCC--cCchhhh-------cccccceeeccCCccc-ccC
Q 045686 534 PSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLN--QLPEEIG-------RLKNLHHLNLSNTSIG-CLP 603 (885)
Q Consensus 534 ~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~--~lp~~i~-------~L~~L~~L~Ls~~~i~-~lp 603 (885)
...++|+.|++++|.+ . +|..+... |++|+|++| .+. .+|..+. ++++|++|++++|++. .+|
T Consensus 40 ~~~~~L~~l~l~~n~l-~--~p~~~~~~---L~~L~L~~n-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 112 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE-A--DLGQFTDI---IKSLSLKRL-TVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAP 112 (312)
T ss_dssp EEEEECTTHHHHCCTT-C--CCHHHHHH---HHHCCCCEE-EEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCC
T ss_pred ccCCCceeEeeccccc-c--cHHHHHHH---Hhhcccccc-cccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhH
Confidence 4457899999999988 6 88775443 899999998 664 4676665 7899999999999986 688
Q ss_pred hhh--hccccccEeecCCcccccccCCcccccC-----cccceecccccccccccCcccccccchhhhcCccCCcceeEE
Q 045686 604 TAI--KRLIKLKVLLLDGIQCHLSIPEGVISSL-----SSLQVFSCFSTELVELIDPLFNETAILDELNCLEHLNDLSLT 676 (885)
Q Consensus 604 ~~i--~~L~~L~~L~l~~~~~l~~lp~~~i~~L-----~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~L~l~ 676 (885)
..+ ..+++|++|++++|. +..+|.. ++.+ ++|++|++++|.+.+. ....+..+++|+.|++
T Consensus 113 ~~~~~~~l~~L~~L~Ls~N~-l~~~~~~-~~~l~~~~~~~L~~L~L~~N~l~~~---------~~~~~~~l~~L~~L~L- 180 (312)
T 1wwl_A 113 PPLLEATGPDLNILNLRNVS-WATRDAW-LAELQQWLKPGLKVLSIAQAHSLNF---------SCEQVRVFPALSTLDL- 180 (312)
T ss_dssp CCSSSCCSCCCSEEEEESCB-CSSSSSH-HHHHHTTCCTTCCEEEEESCSCCCC---------CTTTCCCCSSCCEEEC-
T ss_pred HHHHHhcCCCccEEEccCCC-CcchhHH-HHHHHHhhcCCCcEEEeeCCCCccc---------hHHHhccCCCCCEEEC-
Confidence 776 889999999999997 6666754 7777 8999999999987642 2234445555555544
Q ss_pred EechhhHHhhhCCCcccccceeEEeccccccc-c----c--hhhhhhccceEEeeccCccceeecCCCCCccccccccEE
Q 045686 677 LFSTEAVDKLLNSPKLQRCIRRLTIESSELLS-L----E--LGLMLSHLEILRIKCGFMKRLNIDQGLNNRPSFSALRRL 749 (885)
Q Consensus 677 ~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~-~----~--l~~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~l~~L~~L 749 (885)
++|.... . . +.. +++|+.|+++.|.++.++..... ....+++|+.|
T Consensus 181 -------------------------s~N~l~~~~~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~-~~~~l~~L~~L 233 (312)
T 1wwl_A 181 -------------------------SDNPELGERGLISALCPLK-FPTLQVLALRNAGMETPSGVCSA-LAAARVQLQGL 233 (312)
T ss_dssp -------------------------CSCTTCHHHHHHHHSCTTS-CTTCCEEECTTSCCCCHHHHHHH-HHHTTCCCSEE
T ss_pred -------------------------CCCCcCcchHHHHHHHhcc-CCCCCEEECCCCcCcchHHHHHH-HHhcCCCCCEE
Confidence 4443111 0 0 122 38999999988888743211000 01136899999
Q ss_pred eeccccCCccc---cccccCCCccEEeEeccCCchhhhcccccCCCcccccccccceeccccccccccccCCccCCCCcc
Q 045686 750 SIILCPDIQNL---TCLVHVPSLQFLSLSNCHSLEEIVGTYASGSSESRNYFSNLMAVDLDGLPTLRSICSGTVAFPSLQ 826 (885)
Q Consensus 750 ~L~~c~~l~~l---~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~p~L~ 826 (885)
++++| .++.. +.+..+++|++|++++|. ++.++. .+. ++|++|+++++ .+..++. +..+++|+
T Consensus 234 ~Ls~N-~l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ip~--------~~~--~~L~~L~Ls~N-~l~~~p~-~~~l~~L~ 299 (312)
T 1wwl_A 234 DLSHN-SLRDAAGAPSCDWPSQLNSLNLSFTG-LKQVPK--------GLP--AKLSVLDLSYN-RLDRNPS-PDELPQVG 299 (312)
T ss_dssp ECTTS-CCCSSCCCSCCCCCTTCCEEECTTSC-CSSCCS--------SCC--SEEEEEECCSS-CCCSCCC-TTTSCEEE
T ss_pred ECCCC-cCCcccchhhhhhcCCCCEEECCCCc-cChhhh--------hcc--CCceEEECCCC-CCCCChh-HhhCCCCC
Confidence 99999 56663 345678999999999995 555543 222 89999999996 5666665 78899999
Q ss_pred EEeeccCC
Q 045686 827 TLSITGCP 834 (885)
Q Consensus 827 ~L~i~~C~ 834 (885)
.|++++++
T Consensus 300 ~L~L~~N~ 307 (312)
T 1wwl_A 300 NLSLKGNP 307 (312)
T ss_dssp EEECTTCT
T ss_pred EEeccCCC
Confidence 99999953
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.68 E-value=6.1e-17 Score=170.06 Aligned_cols=196 Identities=19% Similarity=0.225 Sum_probs=98.5
Q ss_pred hhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCch-hhhcccccceeeccCCcccccC-hhhhccccccEe
Q 045686 538 QVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPE-EIGRLKNLHHLNLSNTSIGCLP-TAIKRLIKLKVL 615 (885)
Q Consensus 538 ~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~-~i~~L~~L~~L~Ls~~~i~~lp-~~i~~L~~L~~L 615 (885)
+|++|++++|.+.. ++...|.++++|++|++++| .++.++. .++++++|++|++++|.+..++ ..+.++++|++|
T Consensus 29 ~l~~L~ls~n~l~~--~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (276)
T 2z62_A 29 STKNLDLSFNPLRH--LGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105 (276)
T ss_dssp TCCEEECTTCCCCE--ECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred CccEEECCCCcccc--cCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEE
Confidence 44555555555444 44433555555555555555 4444332 4455555555555555554444 235555555555
Q ss_pred ecCCcccccccCCcccccCcccceecccccccccccCcccccccchhhhcCccCCcceeEEEechhhHHhhhCCCccccc
Q 045686 616 LLDGIQCHLSIPEGVISSLSSLQVFSCFSTELVELIDPLFNETAILDELNCLEHLNDLSLTLFSTEAVDKLLNSPKLQRC 695 (885)
Q Consensus 616 ~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~ 695 (885)
++++|. +..++...++++++|++|++++|.+.+. .....+..+++
T Consensus 106 ~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~--------~l~~~~~~l~~-------------------------- 150 (276)
T 2z62_A 106 VAVETN-LASLENFPIGHLKTLKELNVAHNLIQSF--------KLPEYFSNLTN-------------------------- 150 (276)
T ss_dssp ECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCC--------CCCGGGGGCTT--------------------------
T ss_pred ECCCCC-ccccCchhcccCCCCCEEECcCCcccee--------cCchhhccCCC--------------------------
Confidence 555554 3444432255555555555555544320 01112222222
Q ss_pred ceeEEeccccccccc---hhhhhhccc----eEEeeccCccceeecCCCCCccccccccEEeeccccCCcccc--ccccC
Q 045686 696 IRRLTIESSELLSLE---LGLMLSHLE----ILRIKCGFMKRLNIDQGLNNRPSFSALRRLSIILCPDIQNLT--CLVHV 766 (885)
Q Consensus 696 L~~L~l~~~~~~~~~---l~~~~~~L~----~L~l~~~~l~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~--~l~~l 766 (885)
|+.|++++|.+..+. +..+ ++|+ .|+++.|.++.++...+. ..+|+.|++++| .++.++ .+..+
T Consensus 151 L~~L~Ls~N~l~~~~~~~~~~l-~~L~~l~l~L~ls~n~l~~~~~~~~~-----~~~L~~L~L~~n-~l~~~~~~~~~~l 223 (276)
T 2z62_A 151 LEHLDLSSNKIQSIYCTDLRVL-HQMPLLNLSLDLSLNPMNFIQPGAFK-----EIRLKELALDTN-QLKSVPDGIFDRL 223 (276)
T ss_dssp CCEEECCSSCCCEECGGGGHHH-HTCTTCCEEEECCSSCCCEECTTSSC-----SCCEEEEECCSS-CCSCCCTTTTTTC
T ss_pred CCEEECCCCCCCcCCHHHhhhh-hhccccceeeecCCCcccccCccccC-----CCcccEEECCCC-ceeecCHhHhccc
Confidence 222233333221111 1111 3333 566666677666555443 457888888888 566654 35678
Q ss_pred CCccEEeEeccC
Q 045686 767 PSLQFLSLSNCH 778 (885)
Q Consensus 767 ~~L~~L~L~~~~ 778 (885)
++|+.|+|++|+
T Consensus 224 ~~L~~L~l~~N~ 235 (276)
T 2z62_A 224 TSLQKIWLHTNP 235 (276)
T ss_dssp CSCCEEECCSSC
T ss_pred ccccEEEccCCc
Confidence 888888888775
No 73
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.68 E-value=4.8e-17 Score=166.79 Aligned_cols=93 Identities=20% Similarity=0.308 Sum_probs=70.7
Q ss_pred CccCCCCchhhhcCCcccEEecCCCCCCCcCch-hhhcccccceeeccCCc-ccccCh-hhhccccccEeecCCcccccc
Q 045686 549 LHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPE-EIGRLKNLHHLNLSNTS-IGCLPT-AIKRLIKLKVLLLDGIQCHLS 625 (885)
Q Consensus 549 l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~-~i~~L~~L~~L~Ls~~~-i~~lp~-~i~~L~~L~~L~l~~~~~l~~ 625 (885)
++. +|. + ...|++|++++| .++.+|. .++++++|++|++++|+ +..+|. .+.++++|++|++++|..+..
T Consensus 23 l~~--ip~--~--~~~l~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~ 95 (239)
T 2xwt_C 23 IQR--IPS--L--PPSTQTLKLIET-HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY 95 (239)
T ss_dssp CSS--CCC--C--CTTCCEEEEESC-CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCE
T ss_pred ccc--cCC--C--CCcccEEEEeCC-cceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeE
Confidence 555 665 2 237888888888 7777765 67788888888888886 888876 477888888888887324777
Q ss_pred cCCcccccCcccceecccccccc
Q 045686 626 IPEGVISSLSSLQVFSCFSTELV 648 (885)
Q Consensus 626 lp~~~i~~L~~L~~L~l~~~~~~ 648 (885)
+|...+.++++|++|++++|.+.
T Consensus 96 i~~~~f~~l~~L~~L~l~~n~l~ 118 (239)
T 2xwt_C 96 IDPDALKELPLLKFLGIFNTGLK 118 (239)
T ss_dssp ECTTSEECCTTCCEEEEEEECCC
T ss_pred cCHHHhCCCCCCCEEeCCCCCCc
Confidence 77666788888888888888765
No 74
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.67 E-value=2.8e-16 Score=164.44 Aligned_cols=225 Identities=16% Similarity=0.209 Sum_probs=143.9
Q ss_pred CCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCchhhhcccccceeeccCCcccccChhhhccccccE
Q 045686 535 SCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPEEIGRLKNLHHLNLSNTSIGCLPTAIKRLIKLKV 614 (885)
Q Consensus 535 ~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~ 614 (885)
.+.++..+.+..+.+.. +.. ...+++|+.|++++| .++.++. ++.+++|++|++++|.+..++ .+.++++|++
T Consensus 17 ~~~~l~~l~l~~~~~~~--~~~--~~~l~~L~~L~l~~~-~i~~~~~-l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~ 89 (272)
T 3rfs_A 17 AFAETIKANLKKKSVTD--AVT--QNELNSIDQIIANNS-DIKSVQG-IQYLPNVRYLALGGNKLHDIS-ALKELTNLTY 89 (272)
T ss_dssp HHHHHHHHHHTCSCTTS--EEC--HHHHTTCCEEECTTS-CCCCCTT-GGGCTTCCEEECTTSCCCCCG-GGTTCTTCCE
T ss_pred hHHHHHHHHhcCccccc--ccc--cccccceeeeeeCCC-Ccccccc-cccCCCCcEEECCCCCCCCch-hhcCCCCCCE
Confidence 34566777777776654 333 667888899999888 7777664 788888999999988888765 7888889999
Q ss_pred eecCCcccccccCCcccccCcccceecccccccccccCcccccccchhhhcCccCCcceeEEEechhhHHhhhCCCcccc
Q 045686 615 LLLDGIQCHLSIPEGVISSLSSLQVFSCFSTELVELIDPLFNETAILDELNCLEHLNDLSLTLFSTEAVDKLLNSPKLQR 694 (885)
Q Consensus 615 L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~ 694 (885)
|++++|. +..+|...++++++|++|++++|.+.+. ....+..+++
T Consensus 90 L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~---------~~~~~~~l~~------------------------- 134 (272)
T 3rfs_A 90 LILTGNQ-LQSLPNGVFDKLTNLKELVLVENQLQSL---------PDGVFDKLTN------------------------- 134 (272)
T ss_dssp EECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCCCC---------CTTTTTTCTT-------------------------
T ss_pred EECCCCc-cCccChhHhcCCcCCCEEECCCCcCCcc---------CHHHhccCCC-------------------------
Confidence 9998886 6777776578888999999888877542 1111223333
Q ss_pred cceeEEeccccccccc---hhhhhhccceEEeeccCccceeecCCCCCccccccccEEeeccccCCcccc--ccccCCCc
Q 045686 695 CIRRLTIESSELLSLE---LGLMLSHLEILRIKCGFMKRLNIDQGLNNRPSFSALRRLSIILCPDIQNLT--CLVHVPSL 769 (885)
Q Consensus 695 ~L~~L~l~~~~~~~~~---l~~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~--~l~~l~~L 769 (885)
|+.|++++|.+..+. +.. +++|+.|+++.|.++.++...+. .+++|+.|++++| .++.++ .++.+++|
T Consensus 135 -L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~----~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L 207 (272)
T 3rfs_A 135 -LTYLNLAHNQLQSLPKGVFDK-LTNLTELDLSYNQLQSLPEGVFD----KLTQLKDLRLYQN-QLKSVPDGVFDRLTSL 207 (272)
T ss_dssp -CCEEECCSSCCCCCCTTTTTT-CTTCCEEECCSSCCCCCCTTTTT----TCTTCCEEECCSS-CCSCCCTTTTTTCTTC
T ss_pred -CCEEECCCCccCccCHHHhcc-CccCCEEECCCCCcCccCHHHhc----CCccCCEEECCCC-cCCccCHHHHhCCcCC
Confidence 334444444432222 112 26667777766666655443322 3667777777777 455543 25667777
Q ss_pred cEEeEeccCCchhhhcccccCCCcccccccccceeccccccccccccCCccCCC
Q 045686 770 QFLSLSNCHSLEEIVGTYASGSSESRNYFSNLMAVDLDGLPTLRSICSGTVAFP 823 (885)
Q Consensus 770 ~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~p 823 (885)
+.|++++|+. .+.+|+|+.|.++.+.....++...+.++
T Consensus 208 ~~L~l~~N~~---------------~~~~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 208 QYIWLHDNPW---------------DCTCPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp CEEECCSSCB---------------CCCTTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred CEEEccCCCc---------------cccCcHHHHHHHHHHhCCCcccCcccccC
Confidence 7777777642 23356677776666554445555444433
No 75
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.66 E-value=1.7e-16 Score=167.31 Aligned_cols=129 Identities=22% Similarity=0.205 Sum_probs=93.6
Q ss_pred ccceEEEecccCcccccccccCCCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCchhhhcccccce
Q 045686 512 WHEAVRLSLWGSSIDFLALVEAPSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPEEIGRLKNLHH 591 (885)
Q Consensus 512 ~~~~~~l~l~~~~i~~~~~~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~ 591 (885)
+++++.+++.++.++. ++... .++++.|++++|.+.. ++...|..+++|++|+|++| .++.+|.. +.+++|++
T Consensus 9 l~~l~~l~~~~~~l~~--ip~~~-~~~l~~L~L~~N~l~~--~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~L~~ 81 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTA--LPPDL-PKDTTILHLSENLLYT--FSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLGT 81 (290)
T ss_dssp STTCCEEECTTSCCSS--CCSCC-CTTCCEEECTTSCCSE--EEGGGGTTCTTCCEEECTTS-CCCEEECC-SCCTTCCE
T ss_pred cCCccEEECCCCCCCc--CCCCC-CCCCCEEEcCCCcCCc--cCHHHhhcCCCCCEEECCCC-ccCcccCC-CCCCcCCE
Confidence 4467777777777766 33211 2577777888887776 66666777888888888887 67776654 67778888
Q ss_pred eeccCCcccccChhhhccccccEeecCCcccccccCCcccccCcccceecccccccc
Q 045686 592 LNLSNTSIGCLPTAIKRLIKLKVLLLDGIQCHLSIPEGVISSLSSLQVFSCFSTELV 648 (885)
Q Consensus 592 L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 648 (885)
|++++|.+..+|..+..+++|++|++++|. +..+|.+.+.++++|++|++++|.+.
T Consensus 82 L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~ 137 (290)
T 1p9a_G 82 LDLSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELK 137 (290)
T ss_dssp EECCSSCCSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSCCC
T ss_pred EECCCCcCCcCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCCCCC
Confidence 888888887787777778888888888876 66776655777888888888777664
No 76
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.65 E-value=4.6e-18 Score=193.16 Aligned_cols=61 Identities=16% Similarity=0.144 Sum_probs=35.6
Q ss_pred cccccccceeccccccccccc-cCCc-----cCCCCccEEeeccCCCCC-----CcCCCCccccCCceEEEccHh
Q 045686 795 RNYFSNLMAVDLDGLPTLRSI-CSGT-----VAFPSLQTLSITGCPSLK-----KLPFNSESARRSLISVRASAE 858 (885)
Q Consensus 795 ~~~~~~L~~L~l~~~~~l~~~-~~~~-----~~~p~L~~L~i~~C~~L~-----~lp~~~~~~~~~l~~i~~~~~ 858 (885)
+..+++|++|++++|. +... ...+ ...++|++|++++| .++ .+|... ....+|+.++...+
T Consensus 337 l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l-~~~~~L~~L~l~~N 408 (461)
T 1z7x_W 337 LAQNRFLLELQISNNR-LEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATL-LANHSLRELDLSNN 408 (461)
T ss_dssp HHHCSSCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHH-HHCCCCCEEECCSS
T ss_pred HhhCCCccEEEccCCc-cccccHHHHHHHHcCCCCceEEEECCCC-CCChhhHHHHHHHH-HhCCCccEEECCCC
Confidence 3456788888888763 3321 1111 12678899999887 455 445322 23466777766543
No 77
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.65 E-value=1.6e-16 Score=169.26 Aligned_cols=194 Identities=20% Similarity=0.247 Sum_probs=125.1
Q ss_pred ccceEEEecccCcccccccccCCCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCchhhhcccccce
Q 045686 512 WHEAVRLSLWGSSIDFLALVEAPSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPEEIGRLKNLHH 591 (885)
Q Consensus 512 ~~~~~~l~l~~~~i~~~~~~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~ 591 (885)
+++++.|++.++.+.. ++.+..+++|++|++++|.+.. ++. +..+++|++|+|++| .++.+| .++.+++|++
T Consensus 40 l~~L~~L~l~~~~i~~--l~~~~~l~~L~~L~L~~n~i~~--~~~--~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~ 111 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKDNQITD--LAP--LKNLTKITELELSGN-PLKNVS-AIAGLQSIKT 111 (308)
T ss_dssp HHTCCEEECTTSCCCC--CTTGGGCTTCCEEECCSSCCCC--CGG--GTTCCSCCEEECCSC-CCSCCG-GGTTCTTCCE
T ss_pred cCCcCEEEeeCCCccC--chhhhccCCCCEEEccCCcCCC--Chh--HccCCCCCEEEccCC-cCCCch-hhcCCCCCCE
Confidence 4567777777777766 4556667777777777777666 555 667777777777777 566665 4677777777
Q ss_pred eeccCCcccccChhhhccccccEeecCCcccccccCCcccccCcccceecccccccccccCcccccccchhhhcCccCCc
Q 045686 592 LNLSNTSIGCLPTAIKRLIKLKVLLLDGIQCHLSIPEGVISSLSSLQVFSCFSTELVELIDPLFNETAILDELNCLEHLN 671 (885)
Q Consensus 592 L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 671 (885)
|++++|.+..+|. +..+++|++|++++|. +..++. ++.+++|++|++++|.+.+ +..+..++
T Consensus 112 L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~l~~n~l~~-----------~~~l~~l~--- 173 (308)
T 1h6u_A 112 LDLTSTQITDVTP-LAGLSNLQVLYLDLNQ-ITNISP--LAGLTNLQYLSIGNAQVSD-----------LTPLANLS--- 173 (308)
T ss_dssp EECTTSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG--GGGCTTCCEEECCSSCCCC-----------CGGGTTCT---
T ss_pred EECCCCCCCCchh-hcCCCCCCEEECCCCc-cCcCcc--ccCCCCccEEEccCCcCCC-----------ChhhcCCC---
Confidence 7777777776664 6777777777777775 555554 6677777777777776542 11133333
Q ss_pred ceeEEEechhhHHhhhCCCcccccceeEEeccccccccchhhhhhccceEEeeccCccceeecCCCCCccccccccEEee
Q 045686 672 DLSLTLFSTEAVDKLLNSPKLQRCIRRLTIESSELLSLELGLMLSHLEILRIKCGFMKRLNIDQGLNNRPSFSALRRLSI 751 (885)
Q Consensus 672 ~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~l~~L~~L~L 751 (885)
+|+.|++++|.+..+.....+++|+.|++++|.+..++. . ..+++|+.|++
T Consensus 174 -----------------------~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~-l-----~~l~~L~~L~l 224 (308)
T 1h6u_A 174 -----------------------KLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSP-L-----ANTSNLFIVTL 224 (308)
T ss_dssp -----------------------TCCEEECCSSCCCCCGGGGGCTTCCEEECTTSCCCBCGG-G-----TTCTTCCEEEE
T ss_pred -----------------------CCCEEECCCCccCcChhhcCCCCCCEEEccCCccCcccc-c-----cCCCCCCEEEc
Confidence 455555555554333322223778888887777776552 2 23788888888
Q ss_pred ccccCCcccc
Q 045686 752 ILCPDIQNLT 761 (885)
Q Consensus 752 ~~c~~l~~l~ 761 (885)
++| .++..+
T Consensus 225 ~~N-~i~~~~ 233 (308)
T 1h6u_A 225 TNQ-TITNQP 233 (308)
T ss_dssp EEE-EEECCC
T ss_pred cCC-eeecCC
Confidence 887 455443
No 78
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.65 E-value=4.4e-16 Score=162.72 Aligned_cols=107 Identities=33% Similarity=0.455 Sum_probs=51.5
Q ss_pred chhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCchhh-hcccccceeeccCCcccccChh-hhccccccE
Q 045686 537 PQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPEEI-GRLKNLHHLNLSNTSIGCLPTA-IKRLIKLKV 614 (885)
Q Consensus 537 ~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i-~~L~~L~~L~Ls~~~i~~lp~~-i~~L~~L~~ 614 (885)
++|+.|++++|.+.. ++...|.++++|++|+|++| .++.+|..+ .++++|++|++++|.+..+|.. +..+++|++
T Consensus 37 ~~l~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 113 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSS--LPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAE 113 (270)
T ss_dssp TTCSEEECCSSCCSC--CCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCE
T ss_pred CCCCEEECcCCCCCe--eCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCE
Confidence 344555555555444 44434455555555555555 444444332 4455555555555555444433 344555555
Q ss_pred eecCCcccccccCCcccccCcccceeccccccc
Q 045686 615 LLLDGIQCHLSIPEGVISSLSSLQVFSCFSTEL 647 (885)
Q Consensus 615 L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~ 647 (885)
|++++|. +..+|...++++++|++|++++|.+
T Consensus 114 L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l 145 (270)
T 2o6q_A 114 LRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNEL 145 (270)
T ss_dssp EECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCc-cCeeCHHHhCcCcCCCEEECCCCcC
Confidence 5555553 3444443344555555555554443
No 79
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.65 E-value=7.4e-16 Score=167.57 Aligned_cols=235 Identities=15% Similarity=0.154 Sum_probs=150.6
Q ss_pred HHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCch-hhhcccccceeeccCCcc-cccChh-hhccccccEee
Q 045686 540 RTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPE-EIGRLKNLHHLNLSNTSI-GCLPTA-IKRLIKLKVLL 616 (885)
Q Consensus 540 r~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~-~i~~L~~L~~L~Ls~~~i-~~lp~~-i~~L~~L~~L~ 616 (885)
++++.+++.++. +|.++ .+++++|+|++| .|+.+|. .+.+|++|++|+|++|++ +.+|.. |.++++|+++.
T Consensus 12 ~~v~C~~~~Lt~--iP~~l---~~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l 85 (350)
T 4ay9_X 12 RVFLCQESKVTE--IPSDL---PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR 85 (350)
T ss_dssp TEEEEESTTCCS--CCTTC---CTTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEE
T ss_pred CEEEecCCCCCc--cCcCc---CCCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhh
Confidence 445566677777 88764 367888999998 8888876 578899999999999887 556654 67888887655
Q ss_pred cCCcccccccCCcccccCcccceecccccccccccCcccccccchhhhcCccCCcceeEEEechhhHHhhhCCCcccccc
Q 045686 617 LDGIQCHLSIPEGVISSLSSLQVFSCFSTELVELIDPLFNETAILDELNCLEHLNDLSLTLFSTEAVDKLLNSPKLQRCI 696 (885)
Q Consensus 617 l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L 696 (885)
..++..+..+|.+.+..+++|++|++++|.+....+. ......++
T Consensus 86 ~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~---------~~~~~~~l-------------------------- 130 (350)
T 4ay9_X 86 IEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDV---------HKIHSLQK-------------------------- 130 (350)
T ss_dssp EEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCC---------TTCCBSSC--------------------------
T ss_pred cccCCcccccCchhhhhccccccccccccccccCCch---------hhcccchh--------------------------
Confidence 4443347888777688899999999988877542110 01111122
Q ss_pred eeEEecccc-ccccc---hhhhhhccceEEeeccCccceeecCCCCCccccccccEEeeccccCCcccc--ccccCCCcc
Q 045686 697 RRLTIESSE-LLSLE---LGLMLSHLEILRIKCGFMKRLNIDQGLNNRPSFSALRRLSIILCPDIQNLT--CLVHVPSLQ 770 (885)
Q Consensus 697 ~~L~l~~~~-~~~~~---l~~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~--~l~~l~~L~ 770 (885)
..|.+.++. +..++ +......++.|++++|.++.++...+. ..+|+.|.+.++..++.++ .+..+++|+
T Consensus 131 ~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~-----~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~ 205 (350)
T 4ay9_X 131 VLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFN-----GTQLDELNLSDNNNLEELPNDVFHGASGPV 205 (350)
T ss_dssp EEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSST-----TEEEEEEECTTCTTCCCCCTTTTTTEECCS
T ss_pred hhhhhccccccccccccchhhcchhhhhhccccccccCCChhhcc-----ccchhHHhhccCCcccCCCHHHhccCcccc
Confidence 222332221 22111 111214566777777777777655544 4677777777766777765 356777888
Q ss_pred EEeEeccCCchhhhcccccCCCcccccccccceeccccccccccccCCccCCCCccEEeecc
Q 045686 771 FLSLSNCHSLEEIVGTYASGSSESRNYFSNLMAVDLDGLPTLRSICSGTVAFPSLQTLSITG 832 (885)
Q Consensus 771 ~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~p~L~~L~i~~ 832 (885)
.|+|++| .++.++. ..|.+|+.|.+.++.+++.+|. +..+++|+.+++.+
T Consensus 206 ~LdLs~N-~l~~lp~----------~~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 206 ILDISRT-RIHSLPS----------YGLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTY 255 (350)
T ss_dssp EEECTTS-CCCCCCS----------SSCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSC
T ss_pred hhhcCCC-CcCccCh----------hhhccchHhhhccCCCcCcCCC-chhCcChhhCcCCC
Confidence 8888777 4555432 3456666676666677777663 55677777777643
No 80
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.64 E-value=8.3e-18 Score=191.01 Aligned_cols=314 Identities=17% Similarity=0.076 Sum_probs=193.9
Q ss_pred ccceEEEecccCcccccccccC-CCCc----hhHHHHHhhcCCccCC--CCchhhhcCCcccEEecCCCCCCCc-Cchhh
Q 045686 512 WHEAVRLSLWGSSIDFLALVEA-PSCP----QVRTLLARLTMLHTLP--IPSRFFDSMDALEVLDLSYNLDLNQ-LPEEI 583 (885)
Q Consensus 512 ~~~~~~l~l~~~~i~~~~~~~~-~~~~----~Lr~L~l~~~~l~~~~--~~~~~~~~l~~L~~L~Ls~~~~i~~-lp~~i 583 (885)
.++++.|++++|.+.......+ ..++ +|++|++++|.+.... .....+..+++|++|+|++| .++. .+..+
T Consensus 55 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l 133 (461)
T 1z7x_W 55 NPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN-LLGDAGLQLL 133 (461)
T ss_dssp CTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSS-BCHHHHHHHH
T ss_pred CCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCC-cCchHHHHHH
Confidence 3568888888887755322111 1122 6888888888766310 11334677888888888888 4542 23333
Q ss_pred h-----cccccceeeccCCcccc-----cChhhhccccccEeecCCcccccccCCcccc-----cCcccceecccccccc
Q 045686 584 G-----RLKNLHHLNLSNTSIGC-----LPTAIKRLIKLKVLLLDGIQCHLSIPEGVIS-----SLSSLQVFSCFSTELV 648 (885)
Q Consensus 584 ~-----~L~~L~~L~Ls~~~i~~-----lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~-----~L~~L~~L~l~~~~~~ 648 (885)
. .+.+|++|++++|.+.. ++..+..+++|++|++++|. +...+...+. .+++|++|++++|.+.
T Consensus 134 ~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 212 (461)
T 1z7x_W 134 CEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCGVT 212 (461)
T ss_dssp HHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSCCB
T ss_pred HHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCCCc
Confidence 2 24568888888887753 45667778888888888886 3332211122 3568888888888775
Q ss_pred cccCcccccccchhhhcCccCCcceeEEEechhhH--HhhhC-CCcccccceeEEeccccccccc---hhh---hhhccc
Q 045686 649 ELIDPLFNETAILDELNCLEHLNDLSLTLFSTEAV--DKLLN-SPKLQRCIRRLTIESSELLSLE---LGL---MLSHLE 719 (885)
Q Consensus 649 ~~~~~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~~--~~l~~-~~~~~~~L~~L~l~~~~~~~~~---l~~---~~~~L~ 719 (885)
+.- .......+..+++|+.|+++.+..... ..+.. .....++|++|++++|.+.... +.. .+++|+
T Consensus 213 ~~~-----~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 287 (461)
T 1z7x_W 213 SDN-----CRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLK 287 (461)
T ss_dssp TTH-----HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCC
T ss_pred HHH-----HHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcc
Confidence 310 001234566778888888876654322 11211 1111347999999999855432 221 138899
Q ss_pred eEEeeccCccceeecCCCCC-ccccccccEEeeccccCCccc------cccccCCCccEEeEeccCCchhhhcccccCCC
Q 045686 720 ILRIKCGFMKRLNIDQGLNN-RPSFSALRRLSIILCPDIQNL------TCLVHVPSLQFLSLSNCHSLEEIVGTYASGSS 792 (885)
Q Consensus 720 ~L~l~~~~l~~l~~~~~~~~-~~~l~~L~~L~L~~c~~l~~l------~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~ 792 (885)
.|++++|.+........... ....++|+.|++++| .++.. ..+..+++|++|+|++|. +.+..... ..
T Consensus 288 ~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~---l~ 362 (461)
T 1z7x_W 288 ELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC-SFTAACCSHFSSVLAQNRFLLELQISNNR-LEDAGVRE---LC 362 (461)
T ss_dssp EEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHHHHHH---HH
T ss_pred eEECCCCCCchHHHHHHHHHhccCCccceeeEcCCC-CCchHHHHHHHHHHhhCCCccEEEccCCc-cccccHHH---HH
Confidence 99998887764332211100 012369999999999 46543 245678999999999994 54432100 00
Q ss_pred ccc-ccccccceeccccccccc----cccCCccCCCCccEEeeccCCCCCC
Q 045686 793 ESR-NYFSNLMAVDLDGLPTLR----SICSGTVAFPSLQTLSITGCPSLKK 838 (885)
Q Consensus 793 ~~~-~~~~~L~~L~l~~~~~l~----~~~~~~~~~p~L~~L~i~~C~~L~~ 838 (885)
..+ ...++|++|++++|..-. .++..+..+++|++|++++| .++.
T Consensus 363 ~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N-~i~~ 412 (461)
T 1z7x_W 363 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNN-CLGD 412 (461)
T ss_dssp HHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSS-SCCH
T ss_pred HHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCC-CCCH
Confidence 011 126799999999985432 45555667899999999997 4543
No 81
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.64 E-value=4e-15 Score=162.11 Aligned_cols=294 Identities=13% Similarity=0.062 Sum_probs=178.1
Q ss_pred CCCccchhHHHHHHHHHhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcc------cHHHHHHH
Q 045686 151 IGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDA------NLEKIQES 224 (885)
Q Consensus 151 ~~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~------~~~~~~~~ 224 (885)
.+.++||+++++.|.+++..+ +++.|+|++|+|||||++.+++.. + .+|+.+.... +...++..
T Consensus 11 ~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~----~----~~~~~~~~~~~~~~~~~~~~~~~~ 80 (350)
T 2qen_A 11 REDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER----P----GILIDCRELYAERGHITREELIKE 80 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS----S----EEEEEHHHHHHTTTCBCHHHHHHH
T ss_pred hHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc----C----cEEEEeecccccccCCCHHHHHHH
Confidence 356999999999999998764 799999999999999999998764 1 6677765432 45566666
Q ss_pred HHHHcCCC--------------ccc--cCCCChhHHHHHHHHHhcC-CCeEEEEecCCCcccc-----cccccccccccc
Q 045686 225 ILRRFEIP--------------DQM--WIGKDEDGRANEILSNLRG-KKFVLLLDDVWERLDL-----SKVGVSDLLDDS 282 (885)
Q Consensus 225 i~~~l~~~--------------~~~--~~~~~~~~~~~~l~~~l~~-k~~LlVLDdv~~~~~~-----~~~~~~~~l~~~ 282 (885)
+...++.. ... .......+....+.+.... ++.+||+||++...++ ..+...+.....
T Consensus 81 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~ 160 (350)
T 2qen_A 81 LQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYD 160 (350)
T ss_dssp HHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHH
Confidence 66655420 000 0113445555556555543 4999999999765431 111110100001
Q ss_pred CCCCCEEEEEcCChhHHhhh------------cccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCC
Q 045686 283 SQTGSKIVFTTRSEEVCGEM------------GARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRG 350 (885)
Q Consensus 283 ~~~gs~IivTTR~~~v~~~~------------~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G 350 (885)
...+.++|+|++...+...+ .....+.+.+|+.+|+.+++.+.+.......+ .+.+..|++.|||
T Consensus 161 ~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~---~~~~~~i~~~tgG 237 (350)
T 2qen_A 161 SLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVP---ENEIEEAVELLDG 237 (350)
T ss_dssp HCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCC---HHHHHHHHHHHTT
T ss_pred hcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhCC
Confidence 22478899998876532211 11247899999999999999886543221111 3457899999999
Q ss_pred chhHHHHHHHHHhcCCChhhHH-HHHHHHhcCcccccCCCCccccccccccccc---ccchhhhHHhhhccCCCCceecH
Q 045686 351 LPLALVTIGHAMASRMGPTQWR-YAVGELQRYPFKFAGMGNSVFPILRFSYDSL---REDIFKTCFLYCALFPEEHNITK 426 (885)
Q Consensus 351 lPLai~~~~~~l~~~~~~~~w~-~~~~~l~~~~~~~~~~~~~~~~~l~~sy~~L---~~~~~k~cfl~~s~fp~~~~i~~ 426 (885)
+|+++..++..+....+...+. .+.+... ..+.-.+..+ ++. .+..+..+|. . ..+.
T Consensus 238 ~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~l~~l~~~~~~-~~~~l~~la~--g--~~~~ 298 (350)
T 2qen_A 238 IPGWLVVFGVEYLRNGDFGRAMKRTLEVAK--------------GLIMGELEELRRRSPR-YVDILRAIAL--G--YNRW 298 (350)
T ss_dssp CHHHHHHHHHHHHHHCCHHHHHHHHHHHHH--------------HHHHHHHHHHHHHCHH-HHHHHHHHHT--T--CCSH
T ss_pred CHHHHHHHHHHHhccccHhHHHHHHHHHHH--------------HHHHHHHHHHHhCChh-HHHHHHHHHh--C--CCCH
Confidence 9999999987654322222221 1111110 0111111222 453 7888888887 2 2344
Q ss_pred HHHHHHHHhcCcCCCCCCCChHHHHHHHHHHhcccccCCCCCCcEEE-ehhHHHHHH
Q 045686 427 DELIQLWIGEGFLNGISPRDQGEYIIESLKLACLLERGENSEDSVKM-HNLIRDMAL 482 (885)
Q Consensus 427 ~~li~~w~a~g~~~~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~~~m-Hdlv~~~a~ 482 (885)
..+....-... -. ........+++.|.+.+++...+ +.|++ |++++++.+
T Consensus 299 ~~l~~~~~~~~-~~--~~~~~~~~~l~~L~~~gli~~~~---~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 299 SLIRDYLAVKG-TK--IPEPRLYALLENLKKMNWIVEED---NTYKIADPVVATVLR 349 (350)
T ss_dssp HHHHHHHHHTT-CC--CCHHHHHHHHHHHHHTTSEEEET---TEEEESSHHHHHHHT
T ss_pred HHHHHHHHHHh-CC--CCHHHHHHHHHHHHhCCCEEecC---CEEEEecHHHHHHHc
Confidence 55544332211 00 12345678999999999998753 44554 778877653
No 82
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.64 E-value=1.6e-15 Score=158.42 Aligned_cols=195 Identities=22% Similarity=0.302 Sum_probs=121.2
Q ss_pred hHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCch-hhhcccccceeeccCCcccccChh-hhccccccEee
Q 045686 539 VRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPE-EIGRLKNLHHLNLSNTSIGCLPTA-IKRLIKLKVLL 616 (885)
Q Consensus 539 Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~-~i~~L~~L~~L~Ls~~~i~~lp~~-i~~L~~L~~L~ 616 (885)
+++++++++.++. +|..+ .+.|++|+|++| .++.+|. .++++++|++|++++|.+..+|.. +.++++|++|+
T Consensus 18 ~~~l~~~~~~l~~--ip~~~---~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 18 KNSVDCSSKKLTA--IPSNI---PADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLW 91 (270)
T ss_dssp TTEEECTTSCCSS--CCSCC---CTTCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEE
T ss_pred CCEEEccCCCCCc--cCCCC---CCCCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEE
Confidence 4556666666666 66542 246777777777 5655553 566677777777777777666655 35677777777
Q ss_pred cCCcccccccCCcccccCcccceecccccccccccCcccccccchhhhcCccCCcceeEEEechhhHHhhhCCCcccccc
Q 045686 617 LDGIQCHLSIPEGVISSLSSLQVFSCFSTELVELIDPLFNETAILDELNCLEHLNDLSLTLFSTEAVDKLLNSPKLQRCI 696 (885)
Q Consensus 617 l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L 696 (885)
+++|. +..+|...+.++++|++|++++|.+.+.. ...
T Consensus 92 l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---------~~~--------------------------------- 128 (270)
T 2o6q_A 92 VTDNK-LQALPIGVFDQLVNLAELRLDRNQLKSLP---------PRV--------------------------------- 128 (270)
T ss_dssp CCSSC-CCCCCTTTTTTCSSCCEEECCSSCCCCCC---------TTT---------------------------------
T ss_pred CCCCc-CCcCCHhHcccccCCCEEECCCCccCeeC---------HHH---------------------------------
Confidence 77765 55666555666777777777666553210 000
Q ss_pred eeEEeccccccccchhhhhhccceEEeeccCccceeecCCCCCccccccccEEeeccccCCcccc--ccccCCCccEEeE
Q 045686 697 RRLTIESSELLSLELGLMLSHLEILRIKCGFMKRLNIDQGLNNRPSFSALRRLSIILCPDIQNLT--CLVHVPSLQFLSL 774 (885)
Q Consensus 697 ~~L~l~~~~~~~~~l~~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L 774 (885)
+.. +++|+.|+++.|.++.++...+. .+++|+.|++++| .++.++ .+..+++|++|+|
T Consensus 129 --------------~~~-l~~L~~L~Ls~n~l~~~~~~~~~----~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L 188 (270)
T 2o6q_A 129 --------------FDS-LTKLTYLSLGYNELQSLPKGVFD----KLTSLKELRLYNN-QLKRVPEGAFDKLTELKTLKL 188 (270)
T ss_dssp --------------TTT-CTTCCEEECCSSCCCCCCTTTTT----TCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEEC
T ss_pred --------------hCc-CcCCCEEECCCCcCCccCHhHcc----CCcccceeEecCC-cCcEeChhHhccCCCcCEEEC
Confidence 011 15666666666666665544322 3678888888887 566654 3667788888888
Q ss_pred eccCCchhhhcccccCCCcccccccccceecccccc
Q 045686 775 SNCHSLEEIVGTYASGSSESRNYFSNLMAVDLDGLP 810 (885)
Q Consensus 775 ~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~ 810 (885)
++| .++.++. ..+..+++|+.|++++++
T Consensus 189 ~~N-~l~~~~~-------~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 189 DNN-QLKRVPE-------GAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CSS-CCSCCCT-------TTTTTCTTCCEEECCSSC
T ss_pred CCC-cCCcCCH-------HHhccccCCCEEEecCCC
Confidence 887 3444432 245567777777777765
No 83
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.64 E-value=4.8e-17 Score=191.05 Aligned_cols=304 Identities=15% Similarity=0.067 Sum_probs=142.1
Q ss_pred cceEEEecccCcccccc---cc-cCCCCchhHHHHHhhcCCccCCCC----chhhhcCCcccEEecCCCCCCCcCchhhh
Q 045686 513 HEAVRLSLWGSSIDFLA---LV-EAPSCPQVRTLLARLTMLHTLPIP----SRFFDSMDALEVLDLSYNLDLNQLPEEIG 584 (885)
Q Consensus 513 ~~~~~l~l~~~~i~~~~---~~-~~~~~~~Lr~L~l~~~~l~~~~~~----~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~ 584 (885)
++++.|++.+|.+.... ++ ....+++|++|++++|.+.. +. ..++.++++|++|++++| .+..+|..++
T Consensus 164 ~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~--~~~~~l~~~~~~~~~L~~L~L~~~-~~~~l~~~~~ 240 (592)
T 3ogk_B 164 RKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAK--ISPKDLETIARNCRSLVSVKVGDF-EILELVGFFK 240 (592)
T ss_dssp TTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSS--CCHHHHHHHHHHCTTCCEEECSSC-BGGGGHHHHH
T ss_pred CCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCc--cCHHHHHHHHhhCCCCcEEeccCc-cHHHHHHHHh
Confidence 45566666655543211 00 11234555666666555442 11 112345566666666665 5555565566
Q ss_pred cccccceeeccCCcc----cccChhhhccccccEeecCCcccccccCCcccccCcccceecccccccccccCcccccccc
Q 045686 585 RLKNLHHLNLSNTSI----GCLPTAIKRLIKLKVLLLDGIQCHLSIPEGVISSLSSLQVFSCFSTELVELIDPLFNETAI 660 (885)
Q Consensus 585 ~L~~L~~L~Ls~~~i----~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~ 660 (885)
++++|++|+++.+.. ...+..+..+++|+.|+++++. ...+|.. +..+++|++|++++|.+.+. ..
T Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~-~~~~~~L~~L~Ls~~~l~~~--------~~ 310 (592)
T 3ogk_B 241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPIL-FPFAAQIRKLDLLYALLETE--------DH 310 (592)
T ss_dssp HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGG-GGGGGGCCEEEETTCCCCHH--------HH
T ss_pred hhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHH-HhhcCCCcEEecCCCcCCHH--------HH
Confidence 666666666653211 1222234444455555554432 3344543 56677777777777764321 11
Q ss_pred hhhhcCccCCcceeEEEechhhHHhhhCCCcccccceeEEecc----------cc-ccccc---hhhhhhccceEEeecc
Q 045686 661 LDELNCLEHLNDLSLTLFSTEAVDKLLNSPKLQRCIRRLTIES----------SE-LLSLE---LGLMLSHLEILRIKCG 726 (885)
Q Consensus 661 l~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~----------~~-~~~~~---l~~~~~~L~~L~l~~~ 726 (885)
...+..+++|+.|++... .....+......+++|++|++++ |. +.... +...+++|++|+++|+
T Consensus 311 ~~~~~~~~~L~~L~L~~~--~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 388 (592)
T 3ogk_B 311 CTLIQKCPNLEVLETRNV--IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVS 388 (592)
T ss_dssp HHHHTTCTTCCEEEEEGG--GHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEES
T ss_pred HHHHHhCcCCCEEeccCc--cCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecC
Confidence 123455666666666511 11111111111223566666663 32 22211 1222356666666554
Q ss_pred CccceeecCCC------------------------------CCccccccccEEeeccccC-Ccc--ccccc-cCCCccEE
Q 045686 727 FMKRLNIDQGL------------------------------NNRPSFSALRRLSIILCPD-IQN--LTCLV-HVPSLQFL 772 (885)
Q Consensus 727 ~l~~l~~~~~~------------------------------~~~~~l~~L~~L~L~~c~~-l~~--l~~l~-~l~~L~~L 772 (885)
.++........ .....+++|+.|++++|.+ ++. +..++ .+++|++|
T Consensus 389 ~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L 468 (592)
T 3ogk_B 389 DITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWM 468 (592)
T ss_dssp CCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEE
T ss_pred CccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEe
Confidence 44332111100 0011244555555544432 221 11222 35566666
Q ss_pred eEeccCCchhhhcccccCCCcccccccccceecccccccccc--ccCCccCCCCccEEeeccCCCCCCcC
Q 045686 773 SLSNCHSLEEIVGTYASGSSESRNYFSNLMAVDLDGLPTLRS--ICSGTVAFPSLQTLSITGCPSLKKLP 840 (885)
Q Consensus 773 ~L~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--~~~~~~~~p~L~~L~i~~C~~L~~lp 840 (885)
+|++|. +.+... ......+++|++|+|++|+ +.. ++.....+|+|+.|++++|+ ++...
T Consensus 469 ~L~~n~-l~~~~~------~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~~~ 529 (592)
T 3ogk_B 469 LLGYVG-ESDEGL------MEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASMTG 529 (592)
T ss_dssp EECSCC-SSHHHH------HHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCTTC
T ss_pred eccCCC-CCHHHH------HHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCHHH
Confidence 666553 222100 0123456788888888876 332 22223457888888888876 55443
No 84
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.64 E-value=3.8e-15 Score=166.30 Aligned_cols=310 Identities=13% Similarity=0.081 Sum_probs=184.1
Q ss_pred CCccchhHHHHHHHHHh-hc------CCCeEEEE--EcCCCCcHHHHHHHHHhhhccCC--CCcc-EEEEEEEcCcccHH
Q 045686 152 GKTVGLDSIISEVWRCI-ED------HNEKVIGL--YGMGGVGKTTLLKKLNNKFRDTG--HDFD-LVIWVKVSRDANLE 219 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L-~~------~~~~vi~I--~G~gG~GKTtLa~~v~~~~~~~~--~~f~-~~~wv~v~~~~~~~ 219 (885)
..++||++++++|.+++ .. .....+.| +|++|+||||||+.+++...... ..+. .++|+.+....+..
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLY 101 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHH
Confidence 67999999999999988 42 24567777 99999999999999998764210 0112 35777776777888
Q ss_pred HHHHHHHHHcCCCccccCCCChhHHHHHHHHHhc--CCCeEEEEecCCCccc-----cccccccc-cccccC--C--CCC
Q 045686 220 KIQESILRRFEIPDQMWIGKDEDGRANEILSNLR--GKKFVLLLDDVWERLD-----LSKVGVSD-LLDDSS--Q--TGS 287 (885)
Q Consensus 220 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVLDdv~~~~~-----~~~~~~~~-~l~~~~--~--~gs 287 (885)
.++..++.+++...+. ...+..+....+.+.+. +++++||+||++.... ...+...+ .+.... + ...
T Consensus 102 ~~~~~l~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v 180 (412)
T 1w5s_A 102 TILSLIVRQTGYPIQV-RGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRI 180 (412)
T ss_dssp HHHHHHHHHHTCCCCC-TTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBE
T ss_pred HHHHHHHHHhCCCCCC-CCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceE
Confidence 9999999998765321 23345566666666665 6799999999976432 11111000 000011 2 334
Q ss_pred EEEEEcCChhHHhhhc---------ccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhC------Cch
Q 045686 288 KIVFTTRSEEVCGEMG---------ARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECR------GLP 352 (885)
Q Consensus 288 ~IivTTR~~~v~~~~~---------~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~------GlP 352 (885)
.||+||+..++...+. ....+.+.+++.++++++|...+....... .--.+....|++.|+ |.|
T Consensus 181 ~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~G~p 259 (412)
T 1w5s_A 181 GFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDT-VWEPRHLELISDVYGEDKGGDGSA 259 (412)
T ss_dssp EEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTT-SCCHHHHHHHHHHHCGGGTSCCCH
T ss_pred EEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCC-CCChHHHHHHHHHHHHhccCCCcH
Confidence 5788887655432111 112389999999999999987653111100 111346889999999 999
Q ss_pred hHHHHHHHHHh---c--C---CChhhHHHHHHHHhcCcccccCCCCcccccccccccccccchhhhHHhhhccCC--CCc
Q 045686 353 LALVTIGHAMA---S--R---MGPTQWRYAVGELQRYPFKFAGMGNSVFPILRFSYDSLREDIFKTCFLYCALFP--EEH 422 (885)
Q Consensus 353 Lai~~~~~~l~---~--~---~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~s~fp--~~~ 422 (885)
..+..+..... . . -+...+..+...... ...+.-++..||+. .+.++..++.+. .+.
T Consensus 260 ~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~------------~~~~~~~l~~l~~~-~~~~l~aia~l~~~~~~ 326 (412)
T 1w5s_A 260 RRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA------------ASIQTHELEALSIH-ELIILRLIAEATLGGME 326 (412)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------------CCSSSSSCHH-HHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc------------cchHHHHHHcCCHH-HHHHHHHHHHHHhcCCC
Confidence 76655543221 1 1 122333333221100 23455577889986 788888888653 333
Q ss_pred eecHHHHHHHHH--h-cCcCCCC-CCCChHHHHHHHHHHhcccccCC---CCCCcEEEehhH
Q 045686 423 NITKDELIQLWI--G-EGFLNGI-SPRDQGEYIIESLKLACLLERGE---NSEDSVKMHNLI 477 (885)
Q Consensus 423 ~i~~~~li~~w~--a-~g~~~~~-~~~~~~~~~l~~L~~~~ll~~~~---~~~~~~~mHdlv 477 (885)
.++...+...+. + . ..... ........+++.|...+++.... +..+.|++|++.
T Consensus 327 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~~~~~g~~~~~~l~ 387 (412)
T 1w5s_A 327 WINAGLLRQRYEDASLT-MYNVKPRGYTQYHIYLKHLTSLGLVDAKPSGRGMRGRTTLFRLA 387 (412)
T ss_dssp SBCHHHHHHHHHHHHHH-HSCCCCCCHHHHHHHHHHHHHTTSEEEECC-------CCEEEEC
T ss_pred CccHHHHHHHHHHHHHh-hcCCCCCCHHHHHHHHHHHHhCCCEEeecccCCCCCceeEEEeC
Confidence 555555544432 2 1 11110 12244678899999999997643 224556677665
No 85
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.62 E-value=4.7e-17 Score=191.15 Aligned_cols=303 Identities=13% Similarity=0.072 Sum_probs=166.2
Q ss_pred CccceEEEecccCccccc---ccc-cCCCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCC---CcCchhh
Q 045686 511 GWHEAVRLSLWGSSIDFL---ALV-EAPSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDL---NQLPEEI 583 (885)
Q Consensus 511 ~~~~~~~l~l~~~~i~~~---~~~-~~~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i---~~lp~~i 583 (885)
..++++.|++.+|.+... .++ .+..|++|++|++++|.+.. ++ ..+..+++|++|+++++... ...+..+
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~--l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l 266 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE--LV-GFFKAAANLEEFCGGSLNEDIGMPEKYMNL 266 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG--GH-HHHHHCTTCCEEEECBCCCCTTCTTSSSCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH--HH-HHHhhhhHHHhhcccccccccchHHHHHHh
Confidence 346899999998887621 122 23468999999999998877 76 45888999999999854222 2233445
Q ss_pred hcccccceeeccCCcccccChhhhccccccEeecCCcccccc-cCCcccccCcccceecccccccccc-cCcc-------
Q 045686 584 GRLKNLHHLNLSNTSIGCLPTAIKRLIKLKVLLLDGIQCHLS-IPEGVISSLSSLQVFSCFSTELVEL-IDPL------- 654 (885)
Q Consensus 584 ~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~-lp~~~i~~L~~L~~L~l~~~~~~~~-~~~~------- 654 (885)
+.+++|+.|+++++....+|..+..+++|++|++++|. +.. .....+.++++|++|++..+ +... ++..
T Consensus 267 ~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~-~~~~~l~~~~~~~~~L 344 (592)
T 3ogk_B 267 VFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRNV-IGDRGLEVLAQYCKQL 344 (592)
T ss_dssp CCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTC
T ss_pred hccccccccCccccchhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccCc-cCHHHHHHHHHhCCCC
Confidence 56666666666665555666666666666666666665 221 11112455666666665522 2110 0000
Q ss_pred --------------------cccccchhhhcCccCCcceeEEEech--hhHHhhhCCCcccccceeEEeccc----cccc
Q 045686 655 --------------------FNETAILDELNCLEHLNDLSLTLFST--EAVDKLLNSPKLQRCIRRLTIESS----ELLS 708 (885)
Q Consensus 655 --------------------~~~~~~l~~l~~L~~L~~L~l~~~~~--~~~~~l~~~~~~~~~L~~L~l~~~----~~~~ 708 (885)
........-...+++|+.|.+..+.. ..+..+.. .+++|+.|+++++ .+..
T Consensus 345 ~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~---~~~~L~~L~l~~~~~~n~l~~ 421 (592)
T 3ogk_B 345 KRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGT---YLKNLCDFRLVLLDREERITD 421 (592)
T ss_dssp CEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHH---HCCSCCEEEEEECSCCSCCSS
T ss_pred CEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHh---hCCCCcEEEEeecCCCccccC
Confidence 00000011122344555555532221 11222211 1225666666522 1222
Q ss_pred cc-------hhhhhhccceEEee-cc-CccceeecCCCCCccccccccEEeeccccCCcc--cc-ccccCCCccEEeEec
Q 045686 709 LE-------LGLMLSHLEILRIK-CG-FMKRLNIDQGLNNRPSFSALRRLSIILCPDIQN--LT-CLVHVPSLQFLSLSN 776 (885)
Q Consensus 709 ~~-------l~~~~~~L~~L~l~-~~-~l~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~--l~-~l~~l~~L~~L~L~~ 776 (885)
.+ +...+++|+.|+++ |+ .+........ ...+++|+.|+|++| .++. ++ .+..+++|++|+|++
T Consensus 422 ~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~---~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~L~~L~l~~ 497 (592)
T 3ogk_B 422 LPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYI---GQYSPNVRWMLLGYV-GESDEGLMEFSRGCPNLQKLEMRG 497 (592)
T ss_dssp CCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHH---HHSCTTCCEEEECSC-CSSHHHHHHHHTCCTTCCEEEEES
T ss_pred chHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHH---HHhCccceEeeccCC-CCCHHHHHHHHhcCcccCeeeccC
Confidence 10 11123666666663 12 1222111110 123788999999998 5654 33 457889999999999
Q ss_pred cCCchhhhcccccCCCcccccccccceeccccccccccccC--CccCCCCccEEeeccC
Q 045686 777 CHSLEEIVGTYASGSSESRNYFSNLMAVDLDGLPTLRSICS--GTVAFPSLQTLSITGC 833 (885)
Q Consensus 777 ~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~~p~L~~L~i~~C 833 (885)
|. +..... ......+++|++|+|++|+ +..... -...+|.|....+...
T Consensus 498 n~-l~~~~~------~~~~~~l~~L~~L~ls~n~-it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 498 CC-FSERAI------AAAVTKLPSLRYLWVQGYR-ASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp CC-CBHHHH------HHHHHHCSSCCEEEEESCB-CCTTCTTGGGGCCTTEEEEEECCC
T ss_pred CC-CcHHHH------HHHHHhcCccCeeECcCCc-CCHHHHHHHHHhCCCcEEEEecCc
Confidence 97 443211 0234578999999999987 443211 1235777777666554
No 86
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.62 E-value=3.2e-16 Score=160.60 Aligned_cols=107 Identities=23% Similarity=0.340 Sum_probs=77.5
Q ss_pred chhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCch-hhhcccccceeeccC-CcccccCh-hhhcccccc
Q 045686 537 PQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPE-EIGRLKNLHHLNLSN-TSIGCLPT-AIKRLIKLK 613 (885)
Q Consensus 537 ~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~-~i~~L~~L~~L~Ls~-~~i~~lp~-~i~~L~~L~ 613 (885)
++|++|++++|.++. ++...|.++++|++|++++|..++.+|. .++++++|++|++++ |++..+|. .+.++++|+
T Consensus 31 ~~l~~L~l~~n~l~~--i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~ 108 (239)
T 2xwt_C 31 PSTQTLKLIETHLRT--IPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK 108 (239)
T ss_dssp TTCCEEEEESCCCSE--ECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred CcccEEEEeCCcceE--ECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence 367777777777776 7766677788888888888732666654 567788888888887 77777774 367778888
Q ss_pred EeecCCcccccccCCcccccCcccc---eeccccc-ccc
Q 045686 614 VLLLDGIQCHLSIPEGVISSLSSLQ---VFSCFST-ELV 648 (885)
Q Consensus 614 ~L~l~~~~~l~~lp~~~i~~L~~L~---~L~l~~~-~~~ 648 (885)
+|++++|. +..+|. +..+++|+ +|++++| .+.
T Consensus 109 ~L~l~~n~-l~~lp~--~~~l~~L~~L~~L~l~~N~~l~ 144 (239)
T 2xwt_C 109 FLGIFNTG-LKMFPD--LTKVYSTDIFFILEITDNPYMT 144 (239)
T ss_dssp EEEEEEEC-CCSCCC--CTTCCBCCSEEEEEEESCTTCC
T ss_pred EEeCCCCC-Cccccc--cccccccccccEEECCCCcchh
Confidence 88888876 666775 66777776 8888777 543
No 87
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.62 E-value=4.3e-16 Score=162.97 Aligned_cols=196 Identities=23% Similarity=0.262 Sum_probs=101.7
Q ss_pred cceEEEecccCcccccccccCCCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCchh-hhcccccce
Q 045686 513 HEAVRLSLWGSSIDFLALVEAPSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPEE-IGRLKNLHH 591 (885)
Q Consensus 513 ~~~~~l~l~~~~i~~~~~~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~-i~~L~~L~~ 591 (885)
++++.+.+.++.+.. ++.+..+++|++|++++|.+.. ++. +..+++|++|+|++| .++.+|.. ++++++|++
T Consensus 41 ~~L~~L~l~~~~i~~--~~~l~~l~~L~~L~l~~n~l~~--~~~--l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 41 NSIDQIIANNSDIKS--VQGIQYLPNVRYLALGGNKLHD--ISA--LKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp TTCCEEECTTSCCCC--CTTGGGCTTCCEEECTTSCCCC--CGG--GTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCE
T ss_pred cceeeeeeCCCCccc--ccccccCCCCcEEECCCCCCCC--chh--hcCCCCCCEEECCCC-ccCccChhHhcCCcCCCE
Confidence 345555555555544 3344445555555555555444 321 445555555555555 44433332 344555555
Q ss_pred eeccCCcccccChh-hhccccccEeecCCcccccccCCcccccCcccceecccccccccccCcccccccchhhhcCccCC
Q 045686 592 LNLSNTSIGCLPTA-IKRLIKLKVLLLDGIQCHLSIPEGVISSLSSLQVFSCFSTELVELIDPLFNETAILDELNCLEHL 670 (885)
Q Consensus 592 L~Ls~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L 670 (885)
|++++|++..+|.. ++++++|++|++++|. +..+|...++++++|++|++++|.+.+.. ...
T Consensus 114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---------~~~------- 176 (272)
T 3rfs_A 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYNQLQSLP---------EGV------- 176 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCC---------TTT-------
T ss_pred EECCCCcCCccCHHHhccCCCCCEEECCCCc-cCccCHHHhccCccCCEEECCCCCcCccC---------HHH-------
Confidence 55555555444433 3445555555555553 44444443445555555555554433210 000
Q ss_pred cceeEEEechhhHHhhhCCCcccccceeEEeccccccccchhhhhhccceEEeeccCccceeecCCCCCccccccccEEe
Q 045686 671 NDLSLTLFSTEAVDKLLNSPKLQRCIRRLTIESSELLSLELGLMLSHLEILRIKCGFMKRLNIDQGLNNRPSFSALRRLS 750 (885)
Q Consensus 671 ~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~l~~L~~L~ 750 (885)
+.. +++|+.|+++.|.++.++...+. .+++|+.|+
T Consensus 177 ----------------------------------------~~~-l~~L~~L~L~~N~l~~~~~~~~~----~l~~L~~L~ 211 (272)
T 3rfs_A 177 ----------------------------------------FDK-LTQLKDLRLYQNQLKSVPDGVFD----RLTSLQYIW 211 (272)
T ss_dssp ----------------------------------------TTT-CTTCCEEECCSSCCSCCCTTTTT----TCTTCCEEE
T ss_pred ----------------------------------------hcC-CccCCEEECCCCcCCccCHHHHh----CCcCCCEEE
Confidence 111 15666777766666665544322 378888888
Q ss_pred eccccCCccccccccCCCccEEeEeccCCchhh
Q 045686 751 IILCPDIQNLTCLVHVPSLQFLSLSNCHSLEEI 783 (885)
Q Consensus 751 L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~l 783 (885)
+++|+ +.+.+|+|+.|+++.|.....+
T Consensus 212 l~~N~------~~~~~~~l~~l~~~~n~~~g~i 238 (272)
T 3rfs_A 212 LHDNP------WDCTCPGIRYLSEWINKHSGVV 238 (272)
T ss_dssp CCSSC------BCCCTTTTHHHHHHHHHTGGGB
T ss_pred ccCCC------ccccCcHHHHHHHHHHhCCCcc
Confidence 88883 3356778888888877544444
No 88
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.62 E-value=1.4e-15 Score=159.72 Aligned_cols=95 Identities=32% Similarity=0.387 Sum_probs=80.0
Q ss_pred CCccCCCCchhhhcCCcccEEecCCCCCCCcCch-hhhcccccceeeccCCcccccCh-hhhccccccEeecCCcccccc
Q 045686 548 MLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPE-EIGRLKNLHHLNLSNTSIGCLPT-AIKRLIKLKVLLLDGIQCHLS 625 (885)
Q Consensus 548 ~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~-~i~~L~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~ 625 (885)
.+.. +|..+ .+.|++|++++| .++.+|. .++++++|++|++++|.+..++. .+.++++|++|++++|. +..
T Consensus 18 ~l~~--ip~~l---~~~l~~L~ls~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~ 90 (276)
T 2z62_A 18 NFYK--IPDNL---PFSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQS 90 (276)
T ss_dssp CCSS--CCSSS---CTTCCEEECTTC-CCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCE
T ss_pred Cccc--cCCCC---CCCccEEECCCC-cccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc-cCc
Confidence 4445 77653 257999999999 7877765 78999999999999999988876 58999999999999997 677
Q ss_pred cCCcccccCcccceeccccccccc
Q 045686 626 IPEGVISSLSSLQVFSCFSTELVE 649 (885)
Q Consensus 626 lp~~~i~~L~~L~~L~l~~~~~~~ 649 (885)
++...+.++++|++|++++|.+.+
T Consensus 91 ~~~~~~~~l~~L~~L~l~~n~l~~ 114 (276)
T 2z62_A 91 LALGAFSGLSSLQKLVAVETNLAS 114 (276)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCCC
T ss_pred cChhhhcCCccccEEECCCCCccc
Confidence 776559999999999999998754
No 89
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.61 E-value=3.6e-15 Score=157.13 Aligned_cols=197 Identities=22% Similarity=0.139 Sum_probs=114.5
Q ss_pred CCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcC-chhhhcccccceeeccCCcccccChhhhcccccc
Q 045686 535 SCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQL-PEEIGRLKNLHHLNLSNTSIGCLPTAIKRLIKLK 613 (885)
Q Consensus 535 ~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~l-p~~i~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~ 613 (885)
+++++++++++++.++. +|..+. +.|++|+|++| .++.+ |..+.++++|++|++++|.|..+|.. +.+++|+
T Consensus 8 ~l~~l~~l~~~~~~l~~--ip~~~~---~~l~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~ 80 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTA--LPPDLP---KDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLG 80 (290)
T ss_dssp CSTTCCEEECTTSCCSS--CCSCCC---TTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCC
T ss_pred ccCCccEEECCCCCCCc--CCCCCC---CCCCEEEcCCC-cCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCC
Confidence 34555555666665555 554422 45566666666 44443 34455666666666666666555543 5556666
Q ss_pred EeecCCcccccccCCcccccCcccceecccccccccccCcccccccchhhhcCccCCcceeEEEechhhHHhhhCCCccc
Q 045686 614 VLLLDGIQCHLSIPEGVISSLSSLQVFSCFSTELVELIDPLFNETAILDELNCLEHLNDLSLTLFSTEAVDKLLNSPKLQ 693 (885)
Q Consensus 614 ~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~~~ 693 (885)
+|++++|. +..+|.. +..+++|++|++++|.+.+..+ ..
T Consensus 81 ~L~Ls~N~-l~~l~~~-~~~l~~L~~L~l~~N~l~~l~~---------~~------------------------------ 119 (290)
T 1p9a_G 81 TLDLSHNQ-LQSLPLL-GQTLPALTVLDVSFNRLTSLPL---------GA------------------------------ 119 (290)
T ss_dssp EEECCSSC-CSSCCCC-TTTCTTCCEEECCSSCCCCCCS---------ST------------------------------
T ss_pred EEECCCCc-CCcCchh-hccCCCCCEEECCCCcCcccCH---------HH------------------------------
Confidence 66666664 5555554 5556666666666555432100 00
Q ss_pred ccceeEEeccccccccchhhhhhccceEEeeccCccceeecCCCCCccccccccEEeeccccCCccccc--cccCCCccE
Q 045686 694 RCIRRLTIESSELLSLELGLMLSHLEILRIKCGFMKRLNIDQGLNNRPSFSALRRLSIILCPDIQNLTC--LVHVPSLQF 771 (885)
Q Consensus 694 ~~L~~L~l~~~~~~~~~l~~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~--l~~l~~L~~ 771 (885)
+..+ ++|+.|+++.|.++.++...+. .+++|+.|++++| .++.++. +..+++|+.
T Consensus 120 -----------------~~~l-~~L~~L~L~~N~l~~~~~~~~~----~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~ 176 (290)
T 1p9a_G 120 -----------------LRGL-GELQELYLKGNELKTLPPGLLT----PTPKLEKLSLANN-NLTELPAGLLNGLENLDT 176 (290)
T ss_dssp -----------------TTTC-TTCCEEECTTSCCCCCCTTTTT----TCTTCCEEECTTS-CCSCCCTTTTTTCTTCCE
T ss_pred -----------------HcCC-CCCCEEECCCCCCCccChhhcc----cccCCCEEECCCC-cCCccCHHHhcCcCCCCE
Confidence 1111 5666677766677666554332 3678888888888 5777653 567888888
Q ss_pred EeEeccCCchhhhcccccCCCcccccccccceeccccccc
Q 045686 772 LSLSNCHSLEEIVGTYASGSSESRNYFSNLMAVDLDGLPT 811 (885)
Q Consensus 772 L~L~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 811 (885)
|+|++|. ++.++. .+..+++|+.|+|++++-
T Consensus 177 L~L~~N~-l~~ip~--------~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 177 LLLQENS-LYTIPK--------GFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp EECCSSC-CCCCCT--------TTTTTCCCSEEECCSCCB
T ss_pred EECCCCc-CCccCh--------hhcccccCCeEEeCCCCc
Confidence 8888873 444432 344556788888887653
No 90
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.61 E-value=2.3e-14 Score=156.62 Aligned_cols=290 Identities=11% Similarity=0.075 Sum_probs=171.0
Q ss_pred CCCccchhHHHHHHHHHhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCc-----ccHHHHHHHH
Q 045686 151 IGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRD-----ANLEKIQESI 225 (885)
Q Consensus 151 ~~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~-----~~~~~~~~~i 225 (885)
.+.++||+++++.|.+ +.. +++.|+|++|+|||||++.+++... .. .+|+.+... .+....+..+
T Consensus 12 ~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~l 81 (357)
T 2fna_A 12 RKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELN---LP---YIYLDLRKFEERNYISYKDFLLEL 81 (357)
T ss_dssp GGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHT---CC---EEEEEGGGGTTCSCCCHHHHHHHH
T ss_pred HHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcC---CC---EEEEEchhhccccCCCHHHHHHHH
Confidence 3569999999999999 765 6999999999999999999998762 21 578876642 2334444333
Q ss_pred HHHcC------------------CCccc----c-----CCCChhHHHHHHHHHhcCCCeEEEEecCCCccc-----cccc
Q 045686 226 LRRFE------------------IPDQM----W-----IGKDEDGRANEILSNLRGKKFVLLLDDVWERLD-----LSKV 273 (885)
Q Consensus 226 ~~~l~------------------~~~~~----~-----~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~-----~~~~ 273 (885)
.+.+. ...+. . ...........+.+.-. ++++||+||++.... +...
T Consensus 82 ~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~~~ 160 (357)
T 2fna_A 82 QKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLLPA 160 (357)
T ss_dssp HHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCHHH
T ss_pred HHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHHHH
Confidence 33221 00000 0 01233444444443322 499999999976432 1111
Q ss_pred cccccccccCCCCCEEEEEcCChhHHhh----------hc--ccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHH
Q 045686 274 GVSDLLDDSSQTGSKIVFTTRSEEVCGE----------MG--ARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLA 341 (885)
Q Consensus 274 ~~~~~l~~~~~~gs~IivTTR~~~v~~~----------~~--~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~ 341 (885)
...+. ....+.++|+|++....... +. ....+.+.+|+.+|+.+++.+.+....... .+ .
T Consensus 161 l~~~~---~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~-~~----~ 232 (357)
T 2fna_A 161 LAYAY---DNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDF-KD----Y 232 (357)
T ss_dssp HHHHH---HHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCC-CC----H
T ss_pred HHHHH---HcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCC-Cc----H
Confidence 11111 12246889999998654221 11 125789999999999999988653211111 12 2
Q ss_pred HHHHHHhCCchhHHHHHHHHHhcCCChhhHHH-HHHHHhcCcccccCCCCccccccc-ccc--cccccchhhhHHhhhcc
Q 045686 342 QTVVEECRGLPLALVTIGHAMASRMGPTQWRY-AVGELQRYPFKFAGMGNSVFPILR-FSY--DSLREDIFKTCFLYCAL 417 (885)
Q Consensus 342 ~~I~~~c~GlPLai~~~~~~l~~~~~~~~w~~-~~~~l~~~~~~~~~~~~~~~~~l~-~sy--~~L~~~~~k~cfl~~s~ 417 (885)
..|++.|+|+|+++..++..+....+...|.. +.+.... .+...+. +.+ ..+++. .+..+..+|.
T Consensus 233 ~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~l~~~~~~~~~l~~~-~~~~l~~la~ 301 (357)
T 2fna_A 233 EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKK----------LILKEFENFLHGREIARKR-YLNIMRTLSK 301 (357)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH----------HHHHHHHHHHTTCGGGHHH-HHHHHHHHTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHHH----------HHHHHHHHHhhccccccHH-HHHHHHHHHc
Confidence 88999999999999999887654333333321 1111100 0111111 111 157775 7889998887
Q ss_pred CCCCceecHHHHHHHHH-hcCcCCCCCCCChHHHHHHHHHHhcccccCCCCCCcEE-EehhHHHHH
Q 045686 418 FPEEHNITKDELIQLWI-GEGFLNGISPRDQGEYIIESLKLACLLERGENSEDSVK-MHNLIRDMA 481 (885)
Q Consensus 418 fp~~~~i~~~~li~~w~-a~g~~~~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~~~-mHdlv~~~a 481 (885)
+. +...+....- ..|. .........+++.|.+.+++.... ..|+ -|++++++.
T Consensus 302 ---g~--~~~~l~~~~~~~~g~---~~~~~~~~~~L~~L~~~gli~~~~---~~y~f~~~~~~~~l 356 (357)
T 2fna_A 302 ---CG--KWSDVKRALELEEGI---EISDSEIYNYLTQLTKHSWIIKEG---EKYCPSEPLISLAF 356 (357)
T ss_dssp ---CB--CHHHHHHHHHHHHCS---CCCHHHHHHHHHHHHHTTSEEESS---SCEEESSHHHHHHT
T ss_pred ---CC--CHHHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCCEEecC---CEEEecCHHHHHhh
Confidence 22 4444443210 1121 002245678899999999998753 4566 578888753
No 91
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.61 E-value=2.7e-15 Score=158.37 Aligned_cols=189 Identities=15% Similarity=0.220 Sum_probs=131.2
Q ss_pred CchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCchhhhcccccceeeccCCcccccChhhhccccccEe
Q 045686 536 CPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPEEIGRLKNLHHLNLSNTSIGCLPTAIKRLIKLKVL 615 (885)
Q Consensus 536 ~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L 615 (885)
+.++..+.+..+.+.. +.. +..+++|++|++++| .++.+|. ++.+++|++|++++|++..++. +.++++|++|
T Consensus 23 l~~~~~~~l~~~~~~~--~~~--~~~l~~L~~L~l~~~-~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L 95 (291)
T 1h6t_A 23 FAETIKDNLKKKSVTD--AVT--QNELNSIDQIIANNS-DIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWL 95 (291)
T ss_dssp HHHHHHHHTTCSCTTS--EEC--HHHHHTCCEEECTTS-CCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEE
T ss_pred HHHHHHHHhcCCCccc--ccc--hhhcCcccEEEccCC-CcccChh-HhcCCCCCEEEccCCccCCCcc-cccCCCCCEE
Confidence 3455555666665544 333 567888999999988 7888865 8888999999999998888886 8888999999
Q ss_pred ecCCcccccccCCcccccCcccceecccccccccccCcccccccchhhhcCccCCcceeEEEechhhHHhhhCCCccccc
Q 045686 616 LLDGIQCHLSIPEGVISSLSSLQVFSCFSTELVELIDPLFNETAILDELNCLEHLNDLSLTLFSTEAVDKLLNSPKLQRC 695 (885)
Q Consensus 616 ~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~ 695 (885)
++++|. +..+|. +..+++|++|++++|.+.+ +..+..+++
T Consensus 96 ~l~~n~-l~~~~~--l~~l~~L~~L~L~~n~i~~-----------~~~l~~l~~-------------------------- 135 (291)
T 1h6t_A 96 FLDENK-VKDLSS--LKDLKKLKSLSLEHNGISD-----------INGLVHLPQ-------------------------- 135 (291)
T ss_dssp ECCSSC-CCCGGG--GTTCTTCCEEECTTSCCCC-----------CGGGGGCTT--------------------------
T ss_pred ECCCCc-CCCChh--hccCCCCCEEECCCCcCCC-----------ChhhcCCCC--------------------------
Confidence 999886 666664 7888999999998887652 122333333
Q ss_pred ceeEEeccccccccchhhhhhccceEEeeccCccceeecCCCCCccccccccEEeeccccCCccccccccCCCccEEeEe
Q 045686 696 IRRLTIESSELLSLELGLMLSHLEILRIKCGFMKRLNIDQGLNNRPSFSALRRLSIILCPDIQNLTCLVHVPSLQFLSLS 775 (885)
Q Consensus 696 L~~L~l~~~~~~~~~l~~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~ 775 (885)
|+.|++++|.+..++....+++|+.|++++|.++.++. . ..+++|+.|++++| .++.++.+..+++|+.|+++
T Consensus 136 L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~-l-----~~l~~L~~L~L~~N-~i~~l~~l~~l~~L~~L~l~ 208 (291)
T 1h6t_A 136 LESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-L-----AGLTKLQNLYLSKN-HISDLRALAGLKNLDVLELF 208 (291)
T ss_dssp CCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-G-----TTCTTCCEEECCSS-CCCBCGGGTTCTTCSEEEEE
T ss_pred CCEEEccCCcCCcchhhccCCCCCEEEccCCccccchh-h-----cCCCccCEEECCCC-cCCCChhhccCCCCCEEECc
Confidence 44444444443333211222677777777677766543 2 23678888888887 67777777778888888888
Q ss_pred ccC
Q 045686 776 NCH 778 (885)
Q Consensus 776 ~~~ 778 (885)
+|+
T Consensus 209 ~n~ 211 (291)
T 1h6t_A 209 SQE 211 (291)
T ss_dssp EEE
T ss_pred CCc
Confidence 774
No 92
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.58 E-value=1e-16 Score=188.25 Aligned_cols=300 Identities=15% Similarity=0.123 Sum_probs=137.2
Q ss_pred ccceEEEecccCcccccc---cccC-CCCchhHHHHHhhcCCccCCCCch----hhhcCCcccEEecCCCCCCCcCchhh
Q 045686 512 WHEAVRLSLWGSSIDFLA---LVEA-PSCPQVRTLLARLTMLHTLPIPSR----FFDSMDALEVLDLSYNLDLNQLPEEI 583 (885)
Q Consensus 512 ~~~~~~l~l~~~~i~~~~---~~~~-~~~~~Lr~L~l~~~~l~~~~~~~~----~~~~l~~L~~L~Ls~~~~i~~lp~~i 583 (885)
+++++.|++.+|.+.... +..+ ..+++|++|++++|. .. +... ++..+++|++|++++|..++.+|..+
T Consensus 155 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~--~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~ 231 (594)
T 2p1m_B 155 CRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SE--VSFSALERLVTRCPNLKSLKLNRAVPLEKLATLL 231 (594)
T ss_dssp CTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SC--CCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHH
T ss_pred CCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-Cc--CCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHH
Confidence 446677777766644321 1222 256677777776664 11 2221 23445777777777765555566666
Q ss_pred hcccccceeeccCC-------cccccChhhhccccccEe-ecCCcccccccCCcccccCcccceecccccccccccCccc
Q 045686 584 GRLKNLHHLNLSNT-------SIGCLPTAIKRLIKLKVL-LLDGIQCHLSIPEGVISSLSSLQVFSCFSTELVELIDPLF 655 (885)
Q Consensus 584 ~~L~~L~~L~Ls~~-------~i~~lp~~i~~L~~L~~L-~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~ 655 (885)
.++++|++|+++.+ .+..++..+.++++|+.| .+.+.. ...+|.. +..+++|++|++++|.+.+
T Consensus 232 ~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~-~~~l~~~-~~~~~~L~~L~L~~~~l~~------ 303 (594)
T 2p1m_B 232 QRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAV-PAYLPAV-YSVCSRLTTLNLSYATVQS------ 303 (594)
T ss_dssp HHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCC-GGGGGGG-HHHHTTCCEEECTTCCCCH------
T ss_pred hcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccc-hhhHHHH-HHhhCCCCEEEccCCCCCH------
Confidence 66666776664433 122333334444444444 222221 1222221 3345566666666655332
Q ss_pred ccccchhhhcCccCCcceeEEEechhhHHhhhCCCcccccceeEEeccc--------c-ccccc---hhhhhhccceEEe
Q 045686 656 NETAILDELNCLEHLNDLSLTLFSTEAVDKLLNSPKLQRCIRRLTIESS--------E-LLSLE---LGLMLSHLEILRI 723 (885)
Q Consensus 656 ~~~~~l~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~--------~-~~~~~---l~~~~~~L~~L~l 723 (885)
......+..+++|+.|.+..+-. ...+......+++|+.|++.+| . +.... +...+++|+.|.+
T Consensus 304 --~~l~~~~~~~~~L~~L~l~~~~~--~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~ 379 (594)
T 2p1m_B 304 --YDLVKLLCQCPKLQRLWVLDYIE--DAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLY 379 (594)
T ss_dssp --HHHHHHHTTCTTCCEEEEEGGGH--HHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEE
T ss_pred --HHHHHHHhcCCCcCEEeCcCccC--HHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHH
Confidence 11111233445555555543310 1111111111224555555221 1 11111 1111244444444
Q ss_pred eccCccceeecCCC--------------------------------CCccccccccEEeeccccCCcc--cccccc-CCC
Q 045686 724 KCGFMKRLNIDQGL--------------------------------NNRPSFSALRRLSIILCPDIQN--LTCLVH-VPS 768 (885)
Q Consensus 724 ~~~~l~~l~~~~~~--------------------------------~~~~~l~~L~~L~L~~c~~l~~--l~~l~~-l~~ 768 (885)
.|+.++........ .....+++|+.|++++ .++. ++.++. +++
T Consensus 380 ~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~ 457 (594)
T 2p1m_B 380 FCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKK 457 (594)
T ss_dssp EESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTT
T ss_pred hcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchh
Confidence 44443321111000 0011244555555544 2222 222333 667
Q ss_pred ccEEeEeccCCchhhhcccccCCCcccccccccceecccccccccccc-CCccCCCCccEEeeccCCC
Q 045686 769 LQFLSLSNCHSLEEIVGTYASGSSESRNYFSNLMAVDLDGLPTLRSIC-SGTVAFPSLQTLSITGCPS 835 (885)
Q Consensus 769 L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~p~L~~L~i~~C~~ 835 (885)
|+.|+|++|. +.+... ......+++|++|+|++|+.-.... .....+++|+.|++++|+.
T Consensus 458 L~~L~L~~~~-i~~~~~------~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 458 MEMLSVAFAG-DSDLGM------HHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp CCEEEEESCC-SSHHHH------HHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred ccEeeccCCC-CcHHHH------HHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 7777777764 222111 0112557889999998887522211 2334578899999999865
No 93
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.58 E-value=9.8e-16 Score=163.68 Aligned_cols=133 Identities=13% Similarity=0.065 Sum_probs=89.7
Q ss_pred ceEEEecccCcccccccc---cCCCCchhHHHHHhhcCCccCCCCchhh-hcCCcccEEecCCCCCCCc-Cc----hhhh
Q 045686 514 EAVRLSLWGSSIDFLALV---EAPSCPQVRTLLARLTMLHTLPIPSRFF-DSMDALEVLDLSYNLDLNQ-LP----EEIG 584 (885)
Q Consensus 514 ~~~~l~l~~~~i~~~~~~---~~~~~~~Lr~L~l~~~~l~~~~~~~~~~-~~l~~L~~L~Ls~~~~i~~-lp----~~i~ 584 (885)
.++++.+.++.+....+. ....+++|+.|++++|.+.. ..|..++ ..+++|++|+|++| .+.. .| ..+.
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~~~~~~L~~L~Ls~n-~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITG-TMPPLPLEATGLALSSLRLRNV-SWATGRSWLAELQQW 142 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBS-CCCCCSSSCCCBCCSSCEEESC-CCSSTTSSHHHHHTT
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEecc-chhhhhhhccCCCCCEEEeecc-cccchhhhhHHHHhh
Confidence 456677766655432111 12234568888888887765 1334322 78889999999998 5553 22 3445
Q ss_pred cccccceeeccCCcccccC-hhhhccccccEeecCCcccccc--cCC-cccccCcccceecccccccc
Q 045686 585 RLKNLHHLNLSNTSIGCLP-TAIKRLIKLKVLLLDGIQCHLS--IPE-GVISSLSSLQVFSCFSTELV 648 (885)
Q Consensus 585 ~L~~L~~L~Ls~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~--lp~-~~i~~L~~L~~L~l~~~~~~ 648 (885)
.+++|++|++++|.+..+| ..++.+++|++|++++|..... ++. ..++.+++|++|++++|.+.
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 210 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME 210 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC
Confidence 7889999999999887766 4578889999999999863321 322 21468889999999988775
No 94
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.58 E-value=2.1e-15 Score=164.00 Aligned_cols=236 Identities=17% Similarity=0.092 Sum_probs=140.1
Q ss_pred EEecccCcccccccccCCCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCch-hhhcccccce-eec
Q 045686 517 RLSLWGSSIDFLALVEAPSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPE-EIGRLKNLHH-LNL 594 (885)
Q Consensus 517 ~l~l~~~~i~~~~~~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~-~i~~L~~L~~-L~L 594 (885)
.+.-+++.++. +|.-. .++++.|++++|.++. +|.+.|.++++|++|+|++|...+.+|. .+.++++|+. +.+
T Consensus 13 ~v~C~~~~Lt~--iP~~l-~~~l~~L~Ls~N~i~~--i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 13 VFLCQESKVTE--IPSDL-PRNAIELRFVLTKLRV--IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp EEEEESTTCCS--CCTTC-CTTCSEEEEESCCCSE--ECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred EEEecCCCCCc--cCcCc-CCCCCEEEccCCcCCC--cCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 34555666766 44311 3689999999999999 9988899999999999999943455664 5678888775 566
Q ss_pred cCCcccccChh-hhccccccEeecCCcccccccCCcccccCcccceecccccccccccCcccccccchhhhcCc-cCCcc
Q 045686 595 SNTSIGCLPTA-IKRLIKLKVLLLDGIQCHLSIPEGVISSLSSLQVFSCFSTELVELIDPLFNETAILDELNCL-EHLND 672 (885)
Q Consensus 595 s~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L-~~L~~ 672 (885)
++|++..+|.. +..+++|++|++++|. +..+|...+..+.++..|++.++.....++ ...+..+ ..++.
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~--------~~~f~~~~~~l~~ 158 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIE--------RNSFVGLSFESVI 158 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCCEEC--------TTSSTTSBSSCEE
T ss_pred cCCcccccCchhhhhccccccccccccc-cccCCchhhcccchhhhhhhcccccccccc--------ccchhhcchhhhh
Confidence 67899988654 7899999999999997 777877556677778888886643222111 1112222 12334
Q ss_pred eeEEEechhhHHhhhCCCcccccceeEEecccc-ccccc--hhhhhhccceEEeeccCccceeecCCCCCccccccccEE
Q 045686 673 LSLTLFSTEAVDKLLNSPKLQRCIRRLTIESSE-LLSLE--LGLMLSHLEILRIKCGFMKRLNIDQGLNNRPSFSALRRL 749 (885)
Q Consensus 673 L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~--l~~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~l~~L~~L 749 (885)
|+++.+....++... ....+++.|.+.+++ +..++ ....+++|+.|+++.|.++.++... +.+|++|
T Consensus 159 L~L~~N~i~~i~~~~---f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~-------~~~L~~L 228 (350)
T 4ay9_X 159 LWLNKNGIQEIHNSA---FNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG-------LENLKKL 228 (350)
T ss_dssp EECCSSCCCEECTTS---STTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS-------CTTCCEE
T ss_pred hccccccccCCChhh---ccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh-------hccchHh
Confidence 444333222211110 011245555554332 33332 1111255555555555555544322 4455555
Q ss_pred eeccccCCccccccccCCCccEEeEec
Q 045686 750 SIILCPDIQNLTCLVHVPSLQFLSLSN 776 (885)
Q Consensus 750 ~L~~c~~l~~l~~l~~l~~L~~L~L~~ 776 (885)
.+.++..++.+|.+..+++|+.+++.+
T Consensus 229 ~~l~~~~l~~lP~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 229 RARSTYNLKKLPTLEKLVALMEASLTY 255 (350)
T ss_dssp ECTTCTTCCCCCCTTTCCSCCEEECSC
T ss_pred hhccCCCcCcCCCchhCcChhhCcCCC
Confidence 555555555555555555555555543
No 95
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.58 E-value=5.1e-15 Score=171.32 Aligned_cols=189 Identities=15% Similarity=0.224 Sum_probs=129.6
Q ss_pred CchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCchhhhcccccceeeccCCcccccChhhhccccccEe
Q 045686 536 CPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPEEIGRLKNLHHLNLSNTSIGCLPTAIKRLIKLKVL 615 (885)
Q Consensus 536 ~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L 615 (885)
+..+..+.+..+.+.. +.. +..+.+|++|++++| .+..+| .++.|++|++|+|++|.+..+|. +..+++|++|
T Consensus 20 l~~l~~l~l~~~~i~~--~~~--~~~L~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L 92 (605)
T 1m9s_A 20 FAETIKDNLKKKSVTD--AVT--QNELNSIDQIIANNS-DIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWL 92 (605)
T ss_dssp HHHHHHHHTTCSCTTS--EEC--HHHHTTCCCCBCTTC-CCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEE
T ss_pred HHHHHHHhccCCCccc--ccc--hhcCCCCCEEECcCC-CCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEE
Confidence 4456666666666554 443 567888888888888 777776 47888888888888888888876 8888888888
Q ss_pred ecCCcccccccCCcccccCcccceecccccccccccCcccccccchhhhcCccCCcceeEEEechhhHHhhhCCCccccc
Q 045686 616 LLDGIQCHLSIPEGVISSLSSLQVFSCFSTELVELIDPLFNETAILDELNCLEHLNDLSLTLFSTEAVDKLLNSPKLQRC 695 (885)
Q Consensus 616 ~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~ 695 (885)
+|++|. +..+|. +..|++|++|++++|.+.+ +..+..+++|+
T Consensus 93 ~Ls~N~-l~~l~~--l~~l~~L~~L~Ls~N~l~~-----------l~~l~~l~~L~------------------------ 134 (605)
T 1m9s_A 93 FLDENK-IKDLSS--LKDLKKLKSLSLEHNGISD-----------INGLVHLPQLE------------------------ 134 (605)
T ss_dssp ECCSSC-CCCCTT--STTCTTCCEEECTTSCCCC-----------CGGGGGCTTCS------------------------
T ss_pred ECcCCC-CCCChh--hccCCCCCEEEecCCCCCC-----------CccccCCCccC------------------------
Confidence 888886 666663 7888888888888887652 22344444444
Q ss_pred ceeEEeccccccccchhhhhhccceEEeeccCccceeecCCCCCccccccccEEeeccccCCccccccccCCCccEEeEe
Q 045686 696 IRRLTIESSELLSLELGLMLSHLEILRIKCGFMKRLNIDQGLNNRPSFSALRRLSIILCPDIQNLTCLVHVPSLQFLSLS 775 (885)
Q Consensus 696 L~~L~l~~~~~~~~~l~~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~ 775 (885)
.|+|++|.+..++....+++|+.|+|+.|.+..++. . ..+++|+.|+|++| .++.++.+..+++|+.|+|+
T Consensus 135 --~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l-----~~l~~L~~L~Ls~N-~i~~l~~l~~l~~L~~L~L~ 205 (605)
T 1m9s_A 135 --SLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-L-----AGLTKLQNLYLSKN-HISDLRALAGLKNLDVLELF 205 (605)
T ss_dssp --EEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGG-G-----TTCTTCCEEECCSS-CCCBCGGGTTCTTCSEEECC
T ss_pred --EEECCCCccCCchhhcccCCCCEEECcCCcCCCchh-h-----ccCCCCCEEECcCC-CCCCChHHccCCCCCEEEcc
Confidence 444444443332211122677777776666665543 2 23778888888887 67777777788888888888
Q ss_pred ccC
Q 045686 776 NCH 778 (885)
Q Consensus 776 ~~~ 778 (885)
+|+
T Consensus 206 ~N~ 208 (605)
T 1m9s_A 206 SQE 208 (605)
T ss_dssp SEE
T ss_pred CCc
Confidence 775
No 96
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.57 E-value=6.7e-16 Score=167.28 Aligned_cols=245 Identities=17% Similarity=0.152 Sum_probs=143.6
Q ss_pred hHHHHHhhcCCccCCCCchhhhcC--CcccEEecCCCCCCCcCchhhhcccccceeeccCCcccc--cChhhhccccccE
Q 045686 539 VRTLLARLTMLHTLPIPSRFFDSM--DALEVLDLSYNLDLNQLPEEIGRLKNLHHLNLSNTSIGC--LPTAIKRLIKLKV 614 (885)
Q Consensus 539 Lr~L~l~~~~l~~~~~~~~~~~~l--~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~Ls~~~i~~--lp~~i~~L~~L~~ 614 (885)
++.++++++.+ .+..+..+ +.+++|++++| .+...+..+..+++|++|++++|.+.. +|..+.++++|++
T Consensus 49 ~~~l~l~~~~~-----~~~~~~~~~~~~l~~L~l~~n-~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 49 WQTLDLTGKNL-----HPDVTGRLLSQGVIAFRCPRS-FMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp SSEEECTTCBC-----CHHHHHHHHHTTCSEEECTTC-EECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred heeeccccccC-----CHHHHHhhhhccceEEEcCCc-cccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 34445555443 23345555 67777777777 555555556677777777777776643 6666777777777
Q ss_pred eecCCcccccccCCcccccCcccceeccccc-ccccccCcccccccchhhhcCccCCcceeEEEechhhHHhhhCCCccc
Q 045686 615 LLLDGIQCHLSIPEGVISSLSSLQVFSCFST-ELVELIDPLFNETAILDELNCLEHLNDLSLTLFSTEAVDKLLNSPKLQ 693 (885)
Q Consensus 615 L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~-~~~~~~~~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~~~ 693 (885)
|++++|......|.. ++++++|++|++++| .+.+ ......+..++
T Consensus 123 L~L~~~~l~~~~~~~-l~~~~~L~~L~L~~~~~l~~--------~~l~~~~~~~~------------------------- 168 (336)
T 2ast_B 123 LSLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSE--------FALQTLLSSCS------------------------- 168 (336)
T ss_dssp EECTTCBCCHHHHHH-HTTCTTCSEEECTTCBSCCH--------HHHHHHHHHCT-------------------------
T ss_pred EeCcCcccCHHHHHH-HhcCCCCCEEECCCCCCCCH--------HHHHHHHhcCC-------------------------
Confidence 777777533344444 666777777777776 3321 00111233333
Q ss_pred ccceeEEeccc-cccccc---hhhhhh-ccceEEeecc--Ccc--ceeecCCCCCccccccccEEeeccccCCcc--ccc
Q 045686 694 RCIRRLTIESS-ELLSLE---LGLMLS-HLEILRIKCG--FMK--RLNIDQGLNNRPSFSALRRLSIILCPDIQN--LTC 762 (885)
Q Consensus 694 ~~L~~L~l~~~-~~~~~~---l~~~~~-~L~~L~l~~~--~l~--~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~--l~~ 762 (885)
+|++|++++| .+.... ....++ +|+.|+++++ .++ .++... ..+++|+.|++++|..++. ++.
T Consensus 169 -~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~-----~~~~~L~~L~l~~~~~l~~~~~~~ 242 (336)
T 2ast_B 169 -RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLV-----RRCPNLVHLDLSDSVMLKNDCFQE 242 (336)
T ss_dssp -TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHH-----HHCTTCSEEECTTCTTCCGGGGGG
T ss_pred -CCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHH-----hhCCCCCEEeCCCCCcCCHHHHHH
Confidence 4555566555 333211 112236 7888888555 232 122111 2378899999999854543 567
Q ss_pred cccCCCccEEeEeccCCchhhhcccccCCCcccccccccceeccccccccccccCCccCC-CCccEEeeccCCCCCCcCC
Q 045686 763 LVHVPSLQFLSLSNCHSLEEIVGTYASGSSESRNYFSNLMAVDLDGLPTLRSICSGTVAF-PSLQTLSITGCPSLKKLPF 841 (885)
Q Consensus 763 l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~-p~L~~L~i~~C~~L~~lp~ 841 (885)
+..+++|++|+|++|..+..... ..+..+++|++|++++| +... .+..+ .+|..|+++ |+.++....
T Consensus 243 l~~l~~L~~L~l~~~~~~~~~~~-------~~l~~~~~L~~L~l~~~--i~~~--~~~~l~~~l~~L~l~-~n~l~~~~~ 310 (336)
T 2ast_B 243 FFQLNYLQHLSLSRCYDIIPETL-------LELGEIPTLKTLQVFGI--VPDG--TLQLLKEALPHLQIN-CSHFTTIAR 310 (336)
T ss_dssp GGGCTTCCEEECTTCTTCCGGGG-------GGGGGCTTCCEEECTTS--SCTT--CHHHHHHHSTTSEES-CCCSCCTTC
T ss_pred HhCCCCCCEeeCCCCCCCCHHHH-------HHHhcCCCCCEEeccCc--cCHH--HHHHHHhhCcceEEe-cccCccccC
Confidence 78889999999999864332211 24667899999999987 2211 11222 235556664 466765543
No 97
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.56 E-value=7.2e-16 Score=167.02 Aligned_cols=240 Identities=17% Similarity=0.159 Sum_probs=162.1
Q ss_pred eEEEecccCcccccccccCCCC--chhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCc--Cchhhhcccccc
Q 045686 515 AVRLSLWGSSIDFLALVEAPSC--PQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQ--LPEEIGRLKNLH 590 (885)
Q Consensus 515 ~~~l~l~~~~i~~~~~~~~~~~--~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~--lp~~i~~L~~L~ 590 (885)
.+++++.++.+... .+..+ ++++.|++++|.+.. .+.. +..+++|++|+|++| .+.. +|..+..+++|+
T Consensus 49 ~~~l~l~~~~~~~~---~~~~~~~~~l~~L~l~~n~l~~--~~~~-~~~~~~L~~L~L~~~-~l~~~~~~~~~~~~~~L~ 121 (336)
T 2ast_B 49 WQTLDLTGKNLHPD---VTGRLLSQGVIAFRCPRSFMDQ--PLAE-HFSPFRVQHMDLSNS-VIEVSTLHGILSQCSKLQ 121 (336)
T ss_dssp SSEEECTTCBCCHH---HHHHHHHTTCSEEECTTCEECS--CCCS-CCCCBCCCEEECTTC-EECHHHHHHHHTTBCCCS
T ss_pred heeeccccccCCHH---HHHhhhhccceEEEcCCccccc--cchh-hccCCCCCEEEccCC-CcCHHHHHHHHhhCCCCC
Confidence 66888888776532 22233 678888899998876 5555 457999999999999 5653 788899999999
Q ss_pred eeeccCCccc-ccChhhhccccccEeecCCcccccc--cCCcccccCcccceeccccc-ccccccCcccccccchhhhcC
Q 045686 591 HLNLSNTSIG-CLPTAIKRLIKLKVLLLDGIQCHLS--IPEGVISSLSSLQVFSCFST-ELVELIDPLFNETAILDELNC 666 (885)
Q Consensus 591 ~L~Ls~~~i~-~lp~~i~~L~~L~~L~l~~~~~l~~--lp~~~i~~L~~L~~L~l~~~-~~~~~~~~~~~~~~~l~~l~~ 666 (885)
+|++++|.+. ..|..++++++|++|++++|..+.. ++.. +.++++|++|++++| .+.+. .....+..
T Consensus 122 ~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~-~~~~~~L~~L~l~~~~~l~~~--------~~~~~~~~ 192 (336)
T 2ast_B 122 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL-LSSCSRLDELNLSWCFDFTEK--------HVQVAVAH 192 (336)
T ss_dssp EEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHH-HHHCTTCCEEECCCCTTCCHH--------HHHHHHHH
T ss_pred EEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHH-HhcCCCCCEEcCCCCCCcChH--------HHHHHHHh
Confidence 9999999886 6777899999999999999954553 5554 788999999999999 76531 12233444
Q ss_pred cc-CCcceeEEEechhhHHhhhCCCcccccceeEEecccccc--ccc-hhhhhhccceEEeeccC-ccceeecCCCCCcc
Q 045686 667 LE-HLNDLSLTLFSTEAVDKLLNSPKLQRCIRRLTIESSELL--SLE-LGLMLSHLEILRIKCGF-MKRLNIDQGLNNRP 741 (885)
Q Consensus 667 L~-~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~--~~~-l~~~~~~L~~L~l~~~~-l~~l~~~~~~~~~~ 741 (885)
++ +|+.|+++.+.. .+. .+. ....+++|+.|+++.+. ++....... .
T Consensus 193 l~~~L~~L~l~~~~~------------------------~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l----~ 244 (336)
T 2ast_B 193 VSETITQLNLSGYRK------------------------NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF----F 244 (336)
T ss_dssp SCTTCCEEECCSCGG------------------------GSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGG----G
T ss_pred cccCCCEEEeCCCcc------------------------cCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHH----h
Confidence 55 555555543321 111 111 11123777788775554 443222211 2
Q ss_pred ccccccEEeeccccCCcc--ccccccCCCccEEeEeccCCchhhhcccccCCCcccccc-cccceecccccc
Q 045686 742 SFSALRRLSIILCPDIQN--LTCLVHVPSLQFLSLSNCHSLEEIVGTYASGSSESRNYF-SNLMAVDLDGLP 810 (885)
Q Consensus 742 ~l~~L~~L~L~~c~~l~~--l~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~-~~L~~L~l~~~~ 810 (885)
.+++|+.|++++|..+.. +..++.+++|+.|+|++| +.+ ..+..+ .+|..|+++++.
T Consensus 245 ~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~--i~~----------~~~~~l~~~l~~L~l~~n~ 304 (336)
T 2ast_B 245 QLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI--VPD----------GTLQLLKEALPHLQINCSH 304 (336)
T ss_dssp GCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS--SCT----------TCHHHHHHHSTTSEESCCC
T ss_pred CCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc--cCH----------HHHHHHHhhCcceEEeccc
Confidence 478999999999964443 235788999999999998 222 122333 346777776644
No 98
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.55 E-value=4.7e-16 Score=171.87 Aligned_cols=88 Identities=22% Similarity=0.224 Sum_probs=43.7
Q ss_pred hhcCCcccEEecCCCCCCCc-----CchhhhcccccceeeccCCccc----ccChhh-------hccccccEeecCCccc
Q 045686 559 FDSMDALEVLDLSYNLDLNQ-----LPEEIGRLKNLHHLNLSNTSIG----CLPTAI-------KRLIKLKVLLLDGIQC 622 (885)
Q Consensus 559 ~~~l~~L~~L~Ls~~~~i~~-----lp~~i~~L~~L~~L~Ls~~~i~----~lp~~i-------~~L~~L~~L~l~~~~~ 622 (885)
+..+++|++|+|++| .++. ++..+..+++|++|+|++|.+. .+|..+ .++++|++|++++|..
T Consensus 28 l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 106 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF 106 (386)
T ss_dssp HHHCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred HhcCCCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcC
Confidence 445555666666655 3332 2223445555666666555332 223333 4555666666666542
Q ss_pred cc----ccCCcccccCcccceecccccccc
Q 045686 623 HL----SIPEGVISSLSSLQVFSCFSTELV 648 (885)
Q Consensus 623 l~----~lp~~~i~~L~~L~~L~l~~~~~~ 648 (885)
.. .+|.. +.++++|++|++++|.+.
T Consensus 107 ~~~~~~~l~~~-l~~~~~L~~L~L~~n~l~ 135 (386)
T 2ca6_A 107 GPTAQEPLIDF-LSKHTPLEHLYLHNNGLG 135 (386)
T ss_dssp CTTTHHHHHHH-HHHCTTCCEEECCSSCCH
T ss_pred CHHHHHHHHHH-HHhCCCCCEEECcCCCCC
Confidence 22 13333 455556666666655543
No 99
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.53 E-value=6.7e-15 Score=155.27 Aligned_cols=102 Identities=22% Similarity=0.272 Sum_probs=48.8
Q ss_pred CchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCchhhhcccccceeeccCCcccccChhhhccccccEe
Q 045686 536 CPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPEEIGRLKNLHHLNLSNTSIGCLPTAIKRLIKLKVL 615 (885)
Q Consensus 536 ~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L 615 (885)
+++|+.|++++|.+.. ++. +..+++|++|+|++| .++.++. ++++++|++|++++|.+..+|. +..+++|++|
T Consensus 45 l~~L~~L~l~~~~i~~--~~~--~~~l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L 117 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKS--VQG--IQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSL 117 (291)
T ss_dssp HHTCCEEECTTSCCCC--CTT--GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEE
T ss_pred cCcccEEEccCCCccc--Chh--HhcCCCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEE
Confidence 3444444444444443 332 444555555555555 4444444 4555555555555555544442 4455555555
Q ss_pred ecCCcccccccCCcccccCcccceeccccccc
Q 045686 616 LLDGIQCHLSIPEGVISSLSSLQVFSCFSTEL 647 (885)
Q Consensus 616 ~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~ 647 (885)
++++|. +..++. +..+++|++|++++|.+
T Consensus 118 ~L~~n~-i~~~~~--l~~l~~L~~L~l~~n~l 146 (291)
T 1h6t_A 118 SLEHNG-ISDING--LVHLPQLESLYLGNNKI 146 (291)
T ss_dssp ECTTSC-CCCCGG--GGGCTTCCEEECCSSCC
T ss_pred ECCCCc-CCCChh--hcCCCCCCEEEccCCcC
Confidence 555553 333332 44555555555555444
No 100
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.52 E-value=7.9e-16 Score=170.04 Aligned_cols=232 Identities=18% Similarity=0.211 Sum_probs=119.0
Q ss_pred CCchhHHHHHhhcCCccCCCCc----hhhhcCCcccEEecCCCCCCC----cCchhh-------hcccccceeeccCCcc
Q 045686 535 SCPQVRTLLARLTMLHTLPIPS----RFFDSMDALEVLDLSYNLDLN----QLPEEI-------GRLKNLHHLNLSNTSI 599 (885)
Q Consensus 535 ~~~~Lr~L~l~~~~l~~~~~~~----~~~~~l~~L~~L~Ls~~~~i~----~lp~~i-------~~L~~L~~L~Ls~~~i 599 (885)
.+++|++|++++|.+.. ... ..+..+++|++|+|++| .+. .+|..+ ..+++|++|+|++|.+
T Consensus 30 ~~~~L~~L~L~~n~i~~--~~~~~l~~~l~~~~~L~~L~Ls~~-~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 106 (386)
T 2ca6_A 30 EDDSVKEIVLSGNTIGT--EAARWLSENIASKKDLEIAEFSDI-FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF 106 (386)
T ss_dssp HCSCCCEEECTTSEECH--HHHHHHHHTTTTCTTCCEEECCSC-CTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred cCCCccEEECCCCCCCH--HHHHHHHHHHHhCCCccEEeCccc-ccCccccchhHHHHHHHHHHhhCCcccEEECCCCcC
Confidence 45556666666665443 211 12456777777777776 443 234433 5677777777777777
Q ss_pred cc-----cChhhhccccccEeecCCcccccc-----cCCcccccC---------cccceecccccccccccCcccccccc
Q 045686 600 GC-----LPTAIKRLIKLKVLLLDGIQCHLS-----IPEGVISSL---------SSLQVFSCFSTELVELIDPLFNETAI 660 (885)
Q Consensus 600 ~~-----lp~~i~~L~~L~~L~l~~~~~l~~-----lp~~~i~~L---------~~L~~L~l~~~~~~~~~~~~~~~~~~ 660 (885)
.. +|..+.++++|++|++++|. +.. ++.. +..+ ++|++|++++|.+...- -...
T Consensus 107 ~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~-l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~-----~~~l 179 (386)
T 2ca6_A 107 GPTAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARA-LQELAVNKKAKNAPPLRSIICGRNRLENGS-----MKEW 179 (386)
T ss_dssp CTTTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHH-HHHHHHHHHHHTCCCCCEEECCSSCCTGGG-----HHHH
T ss_pred CHHHHHHHHHHHHhCCCCCEEECcCCC-CCHHHHHHHHHH-HHHHhhhhhcccCCCCcEEECCCCCCCcHH-----HHHH
Confidence 54 66667777777777777775 322 1211 2333 67777777777664210 0001
Q ss_pred hhhhcCccCCcceeEEEechh--hHHhhhCCCcccccceeEEeccccccccchhhhhhccceEEeeccCcc-----ceee
Q 045686 661 LDELNCLEHLNDLSLTLFSTE--AVDKLLNSPKLQRCIRRLTIESSELLSLELGLMLSHLEILRIKCGFMK-----RLNI 733 (885)
Q Consensus 661 l~~l~~L~~L~~L~l~~~~~~--~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~L~~L~l~~~~l~-----~l~~ 733 (885)
...+..+++|+.|+++.+... .+..+.. ..+.. +++|+.|++++|.+. .++.
T Consensus 180 ~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~--------------------~~l~~-~~~L~~L~Ls~n~l~~~g~~~l~~ 238 (386)
T 2ca6_A 180 AKTFQSHRLLHTVKMVQNGIRPEGIEHLLL--------------------EGLAY-CQELKVLDLQDNTFTHLGSSALAI 238 (386)
T ss_dssp HHHHHHCTTCCEEECCSSCCCHHHHHHHHH--------------------TTGGG-CTTCCEEECCSSCCHHHHHHHHHH
T ss_pred HHHHHhCCCcCEEECcCCCCCHhHHHHHHH--------------------HHhhc-CCCccEEECcCCCCCcHHHHHHHH
Confidence 122333444444444332221 1000100 00111 145555555555542 1221
Q ss_pred cCCCCCccccccccEEeeccccCCccc------ccc--ccCCCccEEeEeccCCch----hhhcccccCCCccc-ccccc
Q 045686 734 DQGLNNRPSFSALRRLSIILCPDIQNL------TCL--VHVPSLQFLSLSNCHSLE----EIVGTYASGSSESR-NYFSN 800 (885)
Q Consensus 734 ~~~~~~~~~l~~L~~L~L~~c~~l~~l------~~l--~~l~~L~~L~L~~~~~l~----~l~~~~~~~~~~~~-~~~~~ 800 (885)
.. ..+++|+.|+|++| .++.. ..+ +.+++|++|+|++|..-. .++. .+ ..+|+
T Consensus 239 ~l-----~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~--------~l~~~l~~ 304 (386)
T 2ca6_A 239 AL-----KSWPNLRELGLNDC-LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKT--------VIDEKMPD 304 (386)
T ss_dssp HG-----GGCTTCCEEECTTC-CCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHH--------HHHHHCTT
T ss_pred HH-----ccCCCcCEEECCCC-CCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHH--------HHHhcCCC
Confidence 11 22567777777777 45442 233 337777777777774322 1322 22 44677
Q ss_pred cceeccccccc
Q 045686 801 LMAVDLDGLPT 811 (885)
Q Consensus 801 L~~L~l~~~~~ 811 (885)
|++|++++|+.
T Consensus 305 L~~L~l~~N~l 315 (386)
T 2ca6_A 305 LLFLELNGNRF 315 (386)
T ss_dssp CCEEECTTSBS
T ss_pred ceEEEccCCcC
Confidence 77777777653
No 101
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.52 E-value=5e-15 Score=161.91 Aligned_cols=238 Identities=16% Similarity=0.170 Sum_probs=124.0
Q ss_pred chhHHHHHhhcCCccCCCCc----hhhhcCC-cccEEecCCCCCCCcC-chhhhcc-----cccceeeccCCcccccChh
Q 045686 537 PQVRTLLARLTMLHTLPIPS----RFFDSMD-ALEVLDLSYNLDLNQL-PEEIGRL-----KNLHHLNLSNTSIGCLPTA 605 (885)
Q Consensus 537 ~~Lr~L~l~~~~l~~~~~~~----~~~~~l~-~L~~L~Ls~~~~i~~l-p~~i~~L-----~~L~~L~Ls~~~i~~lp~~ 605 (885)
++|++|++++|.+.. .+. ..|..++ +|++|+|++| .++.. +..++.+ ++|++|++++|.+...+..
T Consensus 22 ~~L~~L~Ls~n~l~~--~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~ 98 (362)
T 3goz_A 22 HGVTSLDLSLNNLYS--ISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSD 98 (362)
T ss_dssp TTCCEEECTTSCGGG--SCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHH
T ss_pred CCceEEEccCCCCCh--HHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHH
Confidence 347777777776666 554 4466666 7777777777 55443 5555554 7777777777777544432
Q ss_pred -----hhcc-ccccEeecCCcccccccCCccc----cc-CcccceecccccccccccCcccccccchhhhcCccCCccee
Q 045686 606 -----IKRL-IKLKVLLLDGIQCHLSIPEGVI----SS-LSSLQVFSCFSTELVELIDPLFNETAILDELNCLEHLNDLS 674 (885)
Q Consensus 606 -----i~~L-~~L~~L~l~~~~~l~~lp~~~i----~~-L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~L~ 674 (885)
+..+ ++|++|++++|. +...+...+ .. .++|++|++++|.+.+.. .......+..++
T Consensus 99 ~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~-----~~~l~~~l~~~~------ 166 (362)
T 3goz_A 99 ELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKS-----SDELIQILAAIP------ 166 (362)
T ss_dssp HHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSC-----HHHHHHHHHTSC------
T ss_pred HHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHH-----HHHHHHHHhcCC------
Confidence 3333 677777777776 444443222 22 257777777777664310 000111111111
Q ss_pred EEEechhhHHhhhCCCcccccceeEEeccccccccc---hhhh---h-hccceEEeeccCccceeecCCCCCccc-cccc
Q 045686 675 LTLFSTEAVDKLLNSPKLQRCIRRLTIESSELLSLE---LGLM---L-SHLEILRIKCGFMKRLNIDQGLNNRPS-FSAL 746 (885)
Q Consensus 675 l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~---l~~~---~-~~L~~L~l~~~~l~~l~~~~~~~~~~~-l~~L 746 (885)
.+|+.|++++|.+.... +... + ++|+.|++++|.+.............. .++|
T Consensus 167 -------------------~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L 227 (362)
T 3goz_A 167 -------------------ANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHV 227 (362)
T ss_dssp -------------------TTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTC
T ss_pred -------------------ccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCc
Confidence 14566666666533322 1111 1 367777776666654221111000011 2467
Q ss_pred cEEeeccccCCcccc------ccccCCCccEEeEeccCCchhhhcccccCCCcccccccccceecccccc
Q 045686 747 RRLSIILCPDIQNLT------CLVHVPSLQFLSLSNCHSLEEIVGTYASGSSESRNYFSNLMAVDLDGLP 810 (885)
Q Consensus 747 ~~L~L~~c~~l~~l~------~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~ 810 (885)
+.|+|++| .++..+ .+..+++|+.|++++|. +..+...........+..+++|+.|++++++
T Consensus 228 ~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~-l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 228 VSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYDI-VKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp CEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHHH-HTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred eEEECcCC-CCCcHHHHHHHHHHhcCCCccEEEeccCC-ccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 77777777 455432 23566777777777774 1111110000011244566677777777754
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.52 E-value=4.1e-15 Score=172.17 Aligned_cols=125 Identities=22% Similarity=0.261 Sum_probs=71.9
Q ss_pred ccceEEEecccCcccccccccCCCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCchhhhcccccce
Q 045686 512 WHEAVRLSLWGSSIDFLALVEAPSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPEEIGRLKNLHH 591 (885)
Q Consensus 512 ~~~~~~l~l~~~~i~~~~~~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~ 591 (885)
+++++.|++.+|.+.. ++.+..+++|+.|+|++|.+.. +++ +..+++|++|+|++| .+..+| .++.|++|++
T Consensus 42 L~~L~~L~l~~n~i~~--l~~l~~l~~L~~L~Ls~N~l~~--~~~--l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~ 113 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKS--VQGIQYLPNVTKLFLNGNKLTD--IKP--LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKS 113 (605)
T ss_dssp HTTCCCCBCTTCCCCC--CTTGGGCTTCCEEECTTSCCCC--CGG--GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCE
T ss_pred CCCCCEEECcCCCCCC--ChHHccCCCCCEEEeeCCCCCC--Chh--hccCCCCCEEECcCC-CCCCCh-hhccCCCCCE
Confidence 3455566666665555 4445556666666666665555 444 556666666666666 555544 3556666666
Q ss_pred eeccCCcccccChhhhccccccEeecCCcccccccCCcccccCcccceecccccccc
Q 045686 592 LNLSNTSIGCLPTAIKRLIKLKVLLLDGIQCHLSIPEGVISSLSSLQVFSCFSTELV 648 (885)
Q Consensus 592 L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 648 (885)
|+|++|.+..+| .+..|++|+.|+|++|. +..++. ++.|++|+.|++++|.+.
T Consensus 114 L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l~~--l~~l~~L~~L~Ls~N~l~ 166 (605)
T 1m9s_A 114 LSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDITV--LSRLTKLDTLSLEDNQIS 166 (605)
T ss_dssp EECTTSCCCCCG-GGGGCTTCSEEECCSSC-CCCCGG--GGSCTTCSEEECCSSCCC
T ss_pred EEecCCCCCCCc-cccCCCccCEEECCCCc-cCCchh--hcccCCCCEEECcCCcCC
Confidence 666666665553 45566666666666664 444422 556666666666666554
No 103
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.50 E-value=6.6e-15 Score=160.92 Aligned_cols=244 Identities=15% Similarity=0.140 Sum_probs=156.4
Q ss_pred CCchhhhcCCcccEEecCCCCCCCcCc-----hhhhccc-ccceeeccCCccccc-Chhhhcc-----ccccEeecCCcc
Q 045686 554 IPSRFFDSMDALEVLDLSYNLDLNQLP-----EEIGRLK-NLHHLNLSNTSIGCL-PTAIKRL-----IKLKVLLLDGIQ 621 (885)
Q Consensus 554 ~~~~~~~~l~~L~~L~Ls~~~~i~~lp-----~~i~~L~-~L~~L~Ls~~~i~~l-p~~i~~L-----~~L~~L~l~~~~ 621 (885)
..+.++...++|++|+|++| .++..+ ..+.+++ +|++|+|++|.+... +..+..+ ++|++|++++|.
T Consensus 13 ~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~ 91 (362)
T 3goz_A 13 PVEEFTSIPHGVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF 91 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC
T ss_pred HHHHHHhCCCCceEEEccCC-CCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc
Confidence 34444555666999999999 677665 5677788 899999999988665 4446654 889999999987
Q ss_pred cccccCCccc----ccC-cccceecccccccccccCcccccccchhhhcCccCCcceeEEEechhhHHhhhCCCcccccc
Q 045686 622 CHLSIPEGVI----SSL-SSLQVFSCFSTELVELIDPLFNETAILDELNCLEHLNDLSLTLFSTEAVDKLLNSPKLQRCI 696 (885)
Q Consensus 622 ~l~~lp~~~i----~~L-~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L 696 (885)
+...+...+ ..+ ++|++|++++|.+.+. ....+ ..... ..+++|
T Consensus 92 -l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~---------~~~~l-------------------~~~l~--~~~~~L 140 (362)
T 3goz_A 92 -LSYKSSDELVKTLAAIPFTITVLDLGWNDFSSK---------SSSEF-------------------KQAFS--NLPASI 140 (362)
T ss_dssp -GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS---------CHHHH-------------------HHHHT--TSCTTC
T ss_pred -CChHHHHHHHHHHHhCCCCccEEECcCCcCCcH---------HHHHH-------------------HHHHH--hCCCce
Confidence 444333213 333 7889999988887542 11111 00000 011267
Q ss_pred eeEEeccccccccc---h----hhhhhccceEEeeccCccceeecCCCCCcccc-ccccEEeeccccCCcc-----cc-c
Q 045686 697 RRLTIESSELLSLE---L----GLMLSHLEILRIKCGFMKRLNIDQGLNNRPSF-SALRRLSIILCPDIQN-----LT-C 762 (885)
Q Consensus 697 ~~L~l~~~~~~~~~---l----~~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~l-~~L~~L~L~~c~~l~~-----l~-~ 762 (885)
++|++++|.+.... + ....++|+.|+++.|.++.............+ ++|+.|+|++| .++. ++ .
T Consensus 141 ~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~i~~~~~~~l~~~ 219 (362)
T 3goz_A 141 TSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSAN-LLGLKSYAELAYI 219 (362)
T ss_dssp CEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHH
T ss_pred eEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCC-CCChhHHHHHHHH
Confidence 78888888754322 1 12214899999988888765432221111224 59999999999 5766 32 3
Q ss_pred ccc-CCCccEEeEeccCCchhhhcccccCCCcccccccccceecccccc-------ccccccCCccCCCCccEEeeccCC
Q 045686 763 LVH-VPSLQFLSLSNCHSLEEIVGTYASGSSESRNYFSNLMAVDLDGLP-------TLRSICSGTVAFPSLQTLSITGCP 834 (885)
Q Consensus 763 l~~-l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~-------~l~~~~~~~~~~p~L~~L~i~~C~ 834 (885)
+.. .++|++|+|++|. +...+. .........+++|++|++++|. .+..+...+..+++|+.|++++++
T Consensus 220 l~~~~~~L~~L~Ls~N~-l~~~~~---~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 220 FSSIPNHVVSLNLCLNC-LHGPSL---ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp HHHSCTTCCEEECCSSC-CCCCCH---HHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred HhcCCCCceEEECcCCC-CCcHHH---HHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 444 4599999999985 433211 0011245678899999999875 133444566678899999999864
No 104
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.50 E-value=4.2e-14 Score=150.94 Aligned_cols=88 Identities=16% Similarity=0.047 Sum_probs=69.1
Q ss_pred cCCcccEEecCCCCCCCcCchhh--hcccccceeeccCCcccc-cC----hhhhccccccEeecCCcccccccCCccccc
Q 045686 561 SMDALEVLDLSYNLDLNQLPEEI--GRLKNLHHLNLSNTSIGC-LP----TAIKRLIKLKVLLLDGIQCHLSIPEGVISS 633 (885)
Q Consensus 561 ~l~~L~~L~Ls~~~~i~~lp~~i--~~L~~L~~L~Ls~~~i~~-lp----~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~ 633 (885)
.++.|++|++++|......|..+ +.+++|++|++++|.+.. .| ..+..+++|++|++++|. +..++...+++
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~ 167 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAH-SPAFSCEQVRA 167 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCS-SCCCCTTSCCC
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCC-cchhhHHHhcc
Confidence 35679999999994445677777 889999999999998864 22 335678999999999997 56666555889
Q ss_pred Ccccceeccccccccc
Q 045686 634 LSSLQVFSCFSTELVE 649 (885)
Q Consensus 634 L~~L~~L~l~~~~~~~ 649 (885)
+++|++|++++|.+.+
T Consensus 168 l~~L~~L~Ls~N~l~~ 183 (310)
T 4glp_A 168 FPALTSLDLSDNPGLG 183 (310)
T ss_dssp CTTCCEEECCSCTTCH
T ss_pred CCCCCEEECCCCCCcc
Confidence 9999999999987653
No 105
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.48 E-value=4.7e-14 Score=145.49 Aligned_cols=133 Identities=29% Similarity=0.401 Sum_probs=89.8
Q ss_pred cceEEEecccCcccccccccCCCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCc-hhhhcccccce
Q 045686 513 HEAVRLSLWGSSIDFLALVEAPSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLP-EEIGRLKNLHH 591 (885)
Q Consensus 513 ~~~~~l~l~~~~i~~~~~~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp-~~i~~L~~L~~ 591 (885)
++++.|++++|.+.......+..+++|++|++++|.+.. ++...|..+++|++|+|++| .++.+| ..++.+++|++
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~ 111 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT--LSAGVFDDLTELGTLGLANN-QLASLPLGVFDHLTQLDK 111 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC--CCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCE
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCc--cCHhHhccCCcCCEEECCCC-cccccChhHhcccCCCCE
Confidence 466777777777666433445667777777777777766 66666677777777777777 555554 34566777777
Q ss_pred eeccCCcccccChh-hhccccccEeecCCcccccccCCcccccCcccceeccccccccc
Q 045686 592 LNLSNTSIGCLPTA-IKRLIKLKVLLLDGIQCHLSIPEGVISSLSSLQVFSCFSTELVE 649 (885)
Q Consensus 592 L~Ls~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~ 649 (885)
|++++|+|..+|.. +..+++|++|++++|. +..+|...++++++|++|++++|.+.+
T Consensus 112 L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~ 169 (251)
T 3m19_A 112 LYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQLQS 169 (251)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred EEcCCCcCCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCCcCCc
Confidence 77777777766655 4667777777777775 566666546777777777777776653
No 106
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.47 E-value=7.2e-14 Score=159.80 Aligned_cols=84 Identities=13% Similarity=0.122 Sum_probs=42.0
Q ss_pred cceeEEeccccccccchhhhhhccceEEeeccCccceeecCCCCCccccccccEEeeccccCCcccc-ccccCCCccEEe
Q 045686 695 CIRRLTIESSELLSLELGLMLSHLEILRIKCGFMKRLNIDQGLNNRPSFSALRRLSIILCPDIQNLT-CLVHVPSLQFLS 773 (885)
Q Consensus 695 ~L~~L~l~~~~~~~~~l~~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~ 773 (885)
+|+.|++++|.+..++. ..++|+.|++++|.++.++. ....-....+.|+.|+|++| .++.+| .+..+++|+.|+
T Consensus 161 ~L~~L~Ls~N~L~~lp~--l~~~L~~L~Ls~N~L~~lp~-~~~~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~ 236 (571)
T 3cvr_A 161 SLEVLSVRNNQLTFLPE--LPESLEALDVSTNLLESLPA-VPVRNHHSEETEIFFRCREN-RITHIPENILSLDPTCTII 236 (571)
T ss_dssp TCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSSCCC-CC--------CCEEEECCSS-CCCCCCGGGGGSCTTEEEE
T ss_pred CcCEEECCCCCCCCcch--hhCCCCEEECcCCCCCchhh-HHHhhhcccccceEEecCCC-cceecCHHHhcCCCCCEEE
Confidence 44445555544333222 11556666666666665544 11000001122377777777 566665 356677777777
Q ss_pred EeccCCchh
Q 045686 774 LSNCHSLEE 782 (885)
Q Consensus 774 L~~~~~l~~ 782 (885)
|++|+....
T Consensus 237 L~~N~l~~~ 245 (571)
T 3cvr_A 237 LEDNPLSSR 245 (571)
T ss_dssp CCSSSCCHH
T ss_pred eeCCcCCCc
Confidence 777754333
No 107
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.46 E-value=2.9e-14 Score=141.08 Aligned_cols=149 Identities=15% Similarity=0.130 Sum_probs=120.0
Q ss_pred CCccceEEEecccCcccccccccCCCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCc-Cchhhhcccc
Q 045686 510 DGWHEAVRLSLWGSSIDFLALVEAPSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQ-LPEEIGRLKN 588 (885)
Q Consensus 510 ~~~~~~~~l~l~~~~i~~~~~~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~-lp~~i~~L~~ 588 (885)
..+++++.+++++|.+.. ++.+..+++|++|++++|.+.. ++. +..+++|++|++++| .++. .|..++.+++
T Consensus 41 ~~l~~L~~L~l~~n~i~~--l~~l~~l~~L~~L~l~~n~~~~--~~~--l~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~ 113 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTD--LTGIEYAHNIKDLTINNIHATN--YNP--ISGLSNLERLRIMGK-DVTSDKIPNLSGLTS 113 (197)
T ss_dssp HHHHTCCEEEEESSCCSC--CTTGGGCTTCSEEEEESCCCSC--CGG--GTTCTTCCEEEEECT-TCBGGGSCCCTTCTT
T ss_pred hhcCCccEEeccCCCccC--hHHHhcCCCCCEEEccCCCCCc--chh--hhcCCCCCEEEeECC-ccCcccChhhcCCCC
Confidence 345678999999998887 5677888999999999997765 543 888999999999999 6654 6788999999
Q ss_pred cceeeccCCcccc-cChhhhccccccEeecCCcccccccCCcccccCcccceecccccccccccCcccccccchhhhcCc
Q 045686 589 LHHLNLSNTSIGC-LPTAIKRLIKLKVLLLDGIQCHLSIPEGVISSLSSLQVFSCFSTELVELIDPLFNETAILDELNCL 667 (885)
Q Consensus 589 L~~L~Ls~~~i~~-lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L 667 (885)
|++|++++|.+.. .|..++.+++|++|++++|..+..+|. +.++++|++|++++|.+.+ +..+..+
T Consensus 114 L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~~-----------~~~l~~l 180 (197)
T 4ezg_A 114 LTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHD-----------YRGIEDF 180 (197)
T ss_dssp CCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCCC-----------CTTGGGC
T ss_pred CCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCcC-----------hHHhccC
Confidence 9999999999864 677799999999999999976778873 8999999999999998753 2245556
Q ss_pred cCCcceeEEEe
Q 045686 668 EHLNDLSLTLF 678 (885)
Q Consensus 668 ~~L~~L~l~~~ 678 (885)
++|+.|++..+
T Consensus 181 ~~L~~L~l~~N 191 (197)
T 4ezg_A 181 PKLNQLYAFSQ 191 (197)
T ss_dssp SSCCEEEECBC
T ss_pred CCCCEEEeeCc
Confidence 66666666543
No 108
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.46 E-value=6.5e-14 Score=142.05 Aligned_cols=132 Identities=33% Similarity=0.377 Sum_probs=105.0
Q ss_pred cceEEEecccCcccccccccCCCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCchh-hhcccccce
Q 045686 513 HEAVRLSLWGSSIDFLALVEAPSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPEE-IGRLKNLHH 591 (885)
Q Consensus 513 ~~~~~l~l~~~~i~~~~~~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~-i~~L~~L~~ 591 (885)
++++.|++++|.+.......+..+++|++|++++|.+.. ++...|..+++|++|+|++| .++.+|.. ++.+++|++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~--i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~ 116 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA--LPVGVFDSLTQLTVLDLGTN-QLTVLPSAVFDRLVHLKE 116 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCC--cChhhcccCCCcCEEECCCC-cCCccChhHhCcchhhCe
Confidence 578888888888877444456778888888888888877 77777788888888888888 77776654 577888888
Q ss_pred eeccCCcccccChhhhccccccEeecCCcccccccCCcccccCcccceecccccccc
Q 045686 592 LNLSNTSIGCLPTAIKRLIKLKVLLLDGIQCHLSIPEGVISSLSSLQVFSCFSTELV 648 (885)
Q Consensus 592 L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 648 (885)
|++++|+|..+|..+..+++|++|++++|. +..+|...+..+++|++|++.+|.+.
T Consensus 117 L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 117 LFMCCNKLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp EECCSSCCCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred EeccCCcccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 888888888888888888888888888886 67777666788888888888888765
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.46 E-value=8.5e-14 Score=144.33 Aligned_cols=167 Identities=20% Similarity=0.230 Sum_probs=124.0
Q ss_pred CCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCchhhhcccccceeeccCCcccccChhhhcccccc
Q 045686 534 PSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPEEIGRLKNLHHLNLSNTSIGCLPTAIKRLIKLK 613 (885)
Q Consensus 534 ~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~ 613 (885)
..+.++..+.+.++.+.. ++. +..+++|++|++++| .++.+| .++.+++|++|++++|++..+|. +.++++|+
T Consensus 16 ~~l~~l~~l~l~~~~i~~--~~~--~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~ 88 (263)
T 1xeu_A 16 PGLANAVKQNLGKQSVTD--LVS--QKELSGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLE 88 (263)
T ss_dssp HHHHHHHHHHHTCSCTTS--EEC--HHHHTTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCC
T ss_pred HHHHHHHHHHhcCCCccc--ccc--hhhcCcCcEEECcCC-Ccccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCC
Confidence 356788888999998877 663 788999999999999 888888 68899999999999999999887 99999999
Q ss_pred EeecCCcccccccCCcccccCcccceecccccccccccCcccccccchhhhcCccCCcceeEEEechhhHHhhhCCCccc
Q 045686 614 VLLLDGIQCHLSIPEGVISSLSSLQVFSCFSTELVELIDPLFNETAILDELNCLEHLNDLSLTLFSTEAVDKLLNSPKLQ 693 (885)
Q Consensus 614 ~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~~~ 693 (885)
+|++++|. +..+|. +.. ++|++|++++|.+.+ +..+..+++|
T Consensus 89 ~L~L~~N~-l~~l~~--~~~-~~L~~L~L~~N~l~~-----------~~~l~~l~~L----------------------- 130 (263)
T 1xeu_A 89 ELSVNRNR-LKNLNG--IPS-ACLSRLFLDNNELRD-----------TDSLIHLKNL----------------------- 130 (263)
T ss_dssp EEECCSSC-CSCCTT--CCC-SSCCEEECCSSCCSB-----------SGGGTTCTTC-----------------------
T ss_pred EEECCCCc-cCCcCc--ccc-CcccEEEccCCccCC-----------ChhhcCcccc-----------------------
Confidence 99999997 777876 344 899999999998753 2234444444
Q ss_pred ccceeEEeccccccccchhhhhhccceEEeeccCccceeecCCCCCccccccccEEeeccc
Q 045686 694 RCIRRLTIESSELLSLELGLMLSHLEILRIKCGFMKRLNIDQGLNNRPSFSALRRLSIILC 754 (885)
Q Consensus 694 ~~L~~L~l~~~~~~~~~l~~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~l~~L~~L~L~~c 754 (885)
+.|++++|.+..++....+++|+.|+++.|.++.+ .. ...+++|+.|++++|
T Consensus 131 ---~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~--~~----l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 131 ---EILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNT--GG----LTRLKKVNWIDLTGQ 182 (263)
T ss_dssp ---CEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCBC--TT----STTCCCCCEEEEEEE
T ss_pred ---cEEECCCCcCCCChHHccCCCCCEEECCCCcCcch--HH----hccCCCCCEEeCCCC
Confidence 44555555543333222237777777777777665 11 123778888888887
No 110
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.46 E-value=1.8e-15 Score=177.76 Aligned_cols=304 Identities=14% Similarity=0.130 Sum_probs=157.5
Q ss_pred CccceEEEecccCc--ccccccccC-CCCchhHHHHHhhc-CCccCCCCchhhhcCCcccEEecCCCC------------
Q 045686 511 GWHEAVRLSLWGSS--IDFLALVEA-PSCPQVRTLLARLT-MLHTLPIPSRFFDSMDALEVLDLSYNL------------ 574 (885)
Q Consensus 511 ~~~~~~~l~l~~~~--i~~~~~~~~-~~~~~Lr~L~l~~~-~l~~~~~~~~~~~~l~~L~~L~Ls~~~------------ 574 (885)
..++++.|++.++. +....+..+ ..+++|++|++++| .+.. ++. .+..+++|++|+++++.
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~--l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~l~ 258 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEK--LAT-LLQRAPQLEELGTGGYTAEVRPDVYSGLS 258 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHH--HHH-HHHHCTTCSEEECSBCCCCCCHHHHHHHH
T ss_pred cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHH--HHH-HHhcCCcceEcccccccCccchhhHHHHH
Confidence 45689999998875 322112221 34788999999887 3333 333 36677888888765441
Q ss_pred ------------------CCCcCchhhhcccccceeeccCCcccc--cChhhhccccccEeecCCcccccccCCcccccC
Q 045686 575 ------------------DLNQLPEEIGRLKNLHHLNLSNTSIGC--LPTAIKRLIKLKVLLLDGIQCHLSIPEGVISSL 634 (885)
Q Consensus 575 ------------------~i~~lp~~i~~L~~L~~L~Ls~~~i~~--lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L 634 (885)
....+|..+..+++|++|++++|.+.. ++..+.++++|++|++++|.....++ .+...+
T Consensus 259 ~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~~~ 337 (594)
T 2p1m_B 259 VALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLE-VLASTC 337 (594)
T ss_dssp HHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHH-HHHHHC
T ss_pred HHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHH-HHHHhC
Confidence 111233333345566666666655421 22224455666666666552111111 112345
Q ss_pred cccceecccccccccccCcccccccchhhh-cCccCCcceeEEEech--hhHHhhhCCCcccccceeEEec-----ccc-
Q 045686 635 SSLQVFSCFSTELVELIDPLFNETAILDEL-NCLEHLNDLSLTLFST--EAVDKLLNSPKLQRCIRRLTIE-----SSE- 705 (885)
Q Consensus 635 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~~L~l~~~~~--~~~~~l~~~~~~~~~L~~L~l~-----~~~- 705 (885)
++|++|+++++.-.+......-....+..+ ..+++|+.|.+..+.. ..+..+. ...++|+.|+++ +|.
T Consensus 338 ~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~---~~~~~L~~L~L~~~~~~~~~~ 414 (594)
T 2p1m_B 338 KDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIA---RNRPNMTRFRLCIIEPKAPDY 414 (594)
T ss_dssp TTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHH---HHCTTCCEEEEEESSTTCCCT
T ss_pred CCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHH---hhCCCcceeEeecccCCCccc
Confidence 566666553321000000000001112222 2356666665543322 1222221 112468888887 233
Q ss_pred ccccc-------hhhhhhccceEEeeccCccceeecCCCCCccccccccEEeeccccCCcc--cccc-ccCCCccEEeEe
Q 045686 706 LLSLE-------LGLMLSHLEILRIKCGFMKRLNIDQGLNNRPSFSALRRLSIILCPDIQN--LTCL-VHVPSLQFLSLS 775 (885)
Q Consensus 706 ~~~~~-------l~~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~--l~~l-~~l~~L~~L~L~ 775 (885)
+...+ +...+++|+.|+++. .+......... ..+++|+.|+|++| .++. +..+ ..+++|+.|+|+
T Consensus 415 l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~---~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~L~~L~L~ 489 (594)
T 2p1m_B 415 LTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIG---TYAKKMEMLSVAFA-GDSDLGMHHVLSGCDSLRKLEIR 489 (594)
T ss_dssp TTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHH---HHCTTCCEEEEESC-CSSHHHHHHHHHHCTTCCEEEEE
T ss_pred ccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHH---HhchhccEeeccCC-CCcHHHHHHHHhcCCCcCEEECc
Confidence 33211 122247788888843 44332211111 12688999999999 4654 2333 579999999999
Q ss_pred ccCCchhhhcccccCCCcccccccccceeccccccccccccCCc-cCCCCccEEeeccC
Q 045686 776 NCHSLEEIVGTYASGSSESRNYFSNLMAVDLDGLPTLRSICSGT-VAFPSLQTLSITGC 833 (885)
Q Consensus 776 ~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~p~L~~L~i~~C 833 (885)
+|.. .+... ......+++|++|++++|+......... ..+|+|+...+...
T Consensus 490 ~n~~-~~~~~------~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~ 541 (594)
T 2p1m_B 490 DCPF-GDKAL------LANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDER 541 (594)
T ss_dssp SCSC-CHHHH------HHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSS
T ss_pred CCCC-cHHHH------HHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCC
Confidence 9975 33211 0234568999999999997633221112 45788876666543
No 111
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.45 E-value=9.4e-14 Score=143.25 Aligned_cols=129 Identities=27% Similarity=0.373 Sum_probs=107.6
Q ss_pred ceEEEecccCcccccccccCCCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCc-hhhhccccccee
Q 045686 514 EAVRLSLWGSSIDFLALVEAPSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLP-EEIGRLKNLHHL 592 (885)
Q Consensus 514 ~~~~l~l~~~~i~~~~~~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp-~~i~~L~~L~~L 592 (885)
+.+++++.++.+.. +|... .++|+.|++++|.+.. ++...|.++++|++|+|++| .++.++ ..+.++++|++|
T Consensus 15 ~~~~l~~~~~~l~~--~p~~~-~~~l~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 88 (251)
T 3m19_A 15 GKKEVDCQGKSLDS--VPSGI-PADTEKLDLQSTGLAT--LSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTL 88 (251)
T ss_dssp GGTEEECTTCCCSS--CCSCC-CTTCCEEECTTSCCCC--CCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEE
T ss_pred CCeEEecCCCCccc--cCCCC-CCCCCEEEccCCCcCc--cCHhHhcCcccCCEEECCCC-cCCccCHhHhccCCcCCEE
Confidence 35577888887776 44322 2689999999999988 87777999999999999999 666654 457899999999
Q ss_pred eccCCcccccChh-hhccccccEeecCCcccccccCCcccccCcccceeccccccccc
Q 045686 593 NLSNTSIGCLPTA-IKRLIKLKVLLLDGIQCHLSIPEGVISSLSSLQVFSCFSTELVE 649 (885)
Q Consensus 593 ~Ls~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~ 649 (885)
++++|++..+|.. +..+++|++|++++|. +..+|...+.++++|++|++++|.+.+
T Consensus 89 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 145 (251)
T 3m19_A 89 GLANNQLASLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQLQS 145 (251)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred ECCCCcccccChhHhcccCCCCEEEcCCCc-CCCcChhHhccCCcccEEECcCCcCCc
Confidence 9999999888865 6899999999999996 788888767899999999999998764
No 112
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.41 E-value=5.9e-13 Score=152.23 Aligned_cols=182 Identities=16% Similarity=0.207 Sum_probs=136.1
Q ss_pred cccEEecCCCCCCCcCchhhhcccccceeeccCCcccccChhhhccccccEeecCCcccccccCCcccccCcccceeccc
Q 045686 564 ALEVLDLSYNLDLNQLPEEIGRLKNLHHLNLSNTSIGCLPTAIKRLIKLKVLLLDGIQCHLSIPEGVISSLSSLQVFSCF 643 (885)
Q Consensus 564 ~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~ 643 (885)
+|++|+|++| .++.+|..+. ++|++|+|++|+|..+| ..+++|++|++++|. +..+|. +.+ +|++|+++
T Consensus 60 ~L~~L~Ls~n-~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~-l~~ip~--l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRL-NLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNR-LSTLPE--LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSS-CCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSC-CSCCCC--CCT--TCCEEECC
T ss_pred CccEEEeCCC-CCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCC-CCCcch--hhc--CCCEEECC
Confidence 8999999999 7888988764 78999999999999999 568999999999996 677887 554 89999999
Q ss_pred ccccccccCcccccccchhhhcCccCCcceeEEEechhhHHhhhCCCcccccceeEEeccccccccchhhhhhccceEEe
Q 045686 644 STELVELIDPLFNETAILDELNCLEHLNDLSLTLFSTEAVDKLLNSPKLQRCIRRLTIESSELLSLELGLMLSHLEILRI 723 (885)
Q Consensus 644 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~L~~L~l 723 (885)
+|.+.+ +| . .++ +|+.|++++|.+..++. .+++|+.|++
T Consensus 129 ~N~l~~-lp----------~--~l~--------------------------~L~~L~Ls~N~l~~lp~--~l~~L~~L~L 167 (571)
T 3cvr_A 129 NNQLTM-LP----------E--LPA--------------------------LLEYINADNNQLTMLPE--LPTSLEVLSV 167 (571)
T ss_dssp SSCCSC-CC----------C--CCT--------------------------TCCEEECCSSCCSCCCC--CCTTCCEEEC
T ss_pred CCcCCC-CC----------C--cCc--------------------------cccEEeCCCCccCcCCC--cCCCcCEEEC
Confidence 988753 11 0 122 45666666666544332 3388999999
Q ss_pred eccCccceeecCCCCCccccccccEEeeccccCCccccccccCCCc-------cEEeEeccCCchhhhcccccCCCcccc
Q 045686 724 KCGFMKRLNIDQGLNNRPSFSALRRLSIILCPDIQNLTCLVHVPSL-------QFLSLSNCHSLEEIVGTYASGSSESRN 796 (885)
Q Consensus 724 ~~~~l~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L-------~~L~L~~~~~l~~l~~~~~~~~~~~~~ 796 (885)
++|.++.++. + .++|+.|+|++| .++.+|.+.. +| +.|+|++| .++.++. .+.
T Consensus 168 s~N~L~~lp~--l------~~~L~~L~Ls~N-~L~~lp~~~~--~L~~~~~~L~~L~Ls~N-~l~~lp~--------~l~ 227 (571)
T 3cvr_A 168 RNNQLTFLPE--L------PESLEALDVSTN-LLESLPAVPV--RNHHSEETEIFFRCREN-RITHIPE--------NIL 227 (571)
T ss_dssp CSSCCSCCCC--C------CTTCCEEECCSS-CCSSCCCCC----------CCEEEECCSS-CCCCCCG--------GGG
T ss_pred CCCCCCCcch--h------hCCCCEEECcCC-CCCchhhHHH--hhhcccccceEEecCCC-cceecCH--------HHh
Confidence 8888888665 2 288999999999 6888776433 67 99999998 4555543 455
Q ss_pred cccccceeccccccccccccC
Q 045686 797 YFSNLMAVDLDGLPTLRSICS 817 (885)
Q Consensus 797 ~~~~L~~L~l~~~~~l~~~~~ 817 (885)
.+++|+.|+|++|+.-..++.
T Consensus 228 ~l~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 228 SLDPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp GSCTTEEEECCSSSCCHHHHH
T ss_pred cCCCCCEEEeeCCcCCCcCHH
Confidence 689999999999875555443
No 113
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.40 E-value=3.7e-13 Score=135.48 Aligned_cols=131 Identities=21% Similarity=0.293 Sum_probs=74.7
Q ss_pred cceEEEecccCcccccccccCCCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCchh-hhcccccce
Q 045686 513 HEAVRLSLWGSSIDFLALVEAPSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPEE-IGRLKNLHH 591 (885)
Q Consensus 513 ~~~~~l~l~~~~i~~~~~~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~-i~~L~~L~~ 591 (885)
++++.|++.+|.+.......+..+++|+.|++++|.+.. +++..|.++++|++|+|++| .++.+|.. +.++++|++
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~--~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~ 108 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISE--LAPDAFQGLRSLNSLVLYGN-KITELPKSLFEGLFSLQL 108 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCE--ECTTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCC--cCHHHhhCCcCCCEEECCCC-cCCccCHhHccCCCCCCE
Confidence 356666666666655322345555666666666666555 54444566666666666666 55555544 355666666
Q ss_pred eeccCCcccccC-hhhhccccccEeecCCcccccccCCcccccCcccceeccccccc
Q 045686 592 LNLSNTSIGCLP-TAIKRLIKLKVLLLDGIQCHLSIPEGVISSLSSLQVFSCFSTEL 647 (885)
Q Consensus 592 L~Ls~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~ 647 (885)
|+|++|+|..++ ..+..+++|++|++++|. +..++.+.+..+++|++|++++|.+
T Consensus 109 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 109 LLLNANKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred EECCCCCCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCCc
Confidence 666666665553 335566666666666664 5555544455566666666666554
No 114
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.40 E-value=1.1e-11 Score=136.55 Aligned_cols=301 Identities=12% Similarity=0.026 Sum_probs=182.0
Q ss_pred CCccchhHHHHHHHHHhhc----CCCeEEEEEcCCCCcHHHHHHHHHhhhccC----CCC-ccEEEEEEEcCcc-cHHHH
Q 045686 152 GKTVGLDSIISEVWRCIED----HNEKVIGLYGMGGVGKTTLLKKLNNKFRDT----GHD-FDLVIWVKVSRDA-NLEKI 221 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~----~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~----~~~-f~~~~wv~v~~~~-~~~~~ 221 (885)
..++||+++++++.+++.. ...+.+.|+|++|+||||+|+.+++..... ... ....+|+++.... +...+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 6799999999999987743 456789999999999999999999876321 011 2356788877766 77888
Q ss_pred HHHHHHHc-CCCccccCCCChhHHHHHHHHHhcCCCeEEEEecCCCcccc--ccc-cccccccccCCCCCEEEEEcCChh
Q 045686 222 QESILRRF-EIPDQMWIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDL--SKV-GVSDLLDDSSQTGSKIVFTTRSEE 297 (885)
Q Consensus 222 ~~~i~~~l-~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~--~~~-~~~~~l~~~~~~gs~IivTTR~~~ 297 (885)
+..++..+ +.... ..+.........+...+..++.+||+||++..... ... ...+. ... .+..||+||+...
T Consensus 100 ~~~l~~~l~~~~~~-~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~--~~~-~~~~iI~~t~~~~ 175 (384)
T 2qby_B 100 LSSLAGKLTGFSVP-KHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLL--RSD-ANISVIMISNDIN 175 (384)
T ss_dssp HHHHHHHHHCSCCC-SSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHH--TSS-SCEEEEEECSSTT
T ss_pred HHHHHHHhcCCCCC-CCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHh--cCC-cceEEEEEECCCc
Confidence 88888887 33221 13344566677788888777779999999764221 111 11111 112 5788999998753
Q ss_pred HHhh----h--cccceeeccCCChHHHHHHHHHHhcC--cccCCccchHHHHHHHHHHhC---Cchh-HHHHHHHHH--h
Q 045686 298 VCGE----M--GARRRFRVECLSPEAALDLFRYKVGE--DVYSSHFEISNLAQTVVEECR---GLPL-ALVTIGHAM--A 363 (885)
Q Consensus 298 v~~~----~--~~~~~~~l~~L~~~~~~~Lf~~~~~~--~~~~~~~~~~~~~~~I~~~c~---GlPL-ai~~~~~~l--~ 363 (885)
.... + .....+.+.+++.++..++|...+.. .....+ .+..+.|++.++ |.|. |+..+-... +
T Consensus 176 ~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a 252 (384)
T 2qby_B 176 VRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYD---DEILSYIAAISAKEHGDARKAVNLLFRAAQLA 252 (384)
T ss_dssp TTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCC---SHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred hHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcC---HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHh
Confidence 2111 1 11238999999999999999987631 111122 234678888888 8887 444333322 2
Q ss_pred ---cCCChhhHHHHHHHHhcCcccccCCCCcccccccccccccccchhhhHHhhhccCCCCceecHHHHHHHHHhcCcCC
Q 045686 364 ---SRMGPTQWRYAVGELQRYPFKFAGMGNSVFPILRFSYDSLREDIFKTCFLYCALFPEEHNITKDELIQLWIGEGFLN 440 (885)
Q Consensus 364 ---~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~s~fp~~~~i~~~~li~~w~a~g~~~ 440 (885)
..-+.+.+..+++.... ..+..++..|+++ .+..+..++....+..+. +......-..| ..
T Consensus 253 ~~~~~i~~~~v~~~~~~~~~-------------~~~~~~~~~l~~~-~~~~l~al~~~~~~~~~~-~~~~~~~~~~g-~~ 316 (384)
T 2qby_B 253 SGGGIIRKEHVDKAIVDYEQ-------------ERLIEAVKALPFH-YKLALRSLIESEDVMSAH-KMYTDLCNKFK-QK 316 (384)
T ss_dssp TSSSCCCHHHHHHHHHHHHH-------------HHHHHHHHSSCHH-HHHHHHHHHTCCBHHHHH-HHHHHHHHHTT-CC
T ss_pred cCCCccCHHHHHHHHHHHhc-------------chHHHHHHcCCHH-HHHHHHHHHHhcccChHH-HHHHHHHHHcC-CC
Confidence 12456667766654421 2345566778774 555555555411101111 11111111223 11
Q ss_pred CCCCCChHHHHHHHHHHhcccccCC---CCCCcEEEehh
Q 045686 441 GISPRDQGEYIIESLKLACLLERGE---NSEDSVKMHNL 476 (885)
Q Consensus 441 ~~~~~~~~~~~l~~L~~~~ll~~~~---~~~~~~~mHdl 476 (885)
.........+++.|...++++... +..+.++++.+
T Consensus 317 -~~~~~~~~~~l~~L~~~gli~~~~~~~g~~g~~~~~~l 354 (384)
T 2qby_B 317 -PLSYRRFSDIISELDMFGIVKIRIINRGRAGGVKKYAL 354 (384)
T ss_dssp -CCCHHHHHHHHHHHHHTTSEEEEEECCTTTTCCEEEEE
T ss_pred -CCCHHHHHHHHHHHHhCCCEEEEeccCCCCCceEEEEe
Confidence 123356778899999999998632 22344555433
No 115
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.40 E-value=6.2e-13 Score=131.44 Aligned_cols=151 Identities=20% Similarity=0.237 Sum_probs=105.1
Q ss_pred hhcCCcccEEecCCCCCCCcCchhhhcccccceeeccCCcccccChhhhccccccEeecCCcccccccCCcccccCcccc
Q 045686 559 FDSMDALEVLDLSYNLDLNQLPEEIGRLKNLHHLNLSNTSIGCLPTAIKRLIKLKVLLLDGIQCHLSIPEGVISSLSSLQ 638 (885)
Q Consensus 559 ~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~ 638 (885)
...+++|++|++++| .++.+| .+..+++|++|++++|.+..++ .+..+++|++|++++|......|.. ++++++|+
T Consensus 40 ~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~ 115 (197)
T 4ezg_A 40 EAQMNSLTYITLANI-NVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPN-LSGLTSLT 115 (197)
T ss_dssp HHHHHTCCEEEEESS-CCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCC-CTTCTTCC
T ss_pred hhhcCCccEEeccCC-CccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChh-hcCCCCCC
Confidence 467888999999998 888888 6888999999999999887766 7888999999999998743335655 88999999
Q ss_pred eecccccccccccCcccccccchhhhcCccCCcceeEEEechhhHHhhhCCCcccccceeEEecccc-ccccchhhhhhc
Q 045686 639 VFSCFSTELVELIDPLFNETAILDELNCLEHLNDLSLTLFSTEAVDKLLNSPKLQRCIRRLTIESSE-LLSLELGLMLSH 717 (885)
Q Consensus 639 ~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~l~~~~~~ 717 (885)
+|++++|.+.+. .+..+..+++|+.|+++ +|. +..++....+++
T Consensus 116 ~L~Ls~n~i~~~---------~~~~l~~l~~L~~L~L~--------------------------~n~~i~~~~~l~~l~~ 160 (197)
T 4ezg_A 116 LLDISHSAHDDS---------ILTKINTLPKVNSIDLS--------------------------YNGAITDIMPLKTLPE 160 (197)
T ss_dssp EEECCSSBCBGG---------GHHHHTTCSSCCEEECC--------------------------SCTBCCCCGGGGGCSS
T ss_pred EEEecCCccCcH---------hHHHHhhCCCCCEEEcc--------------------------CCCCccccHhhcCCCC
Confidence 999999887542 34445555555555544 333 222221111266
Q ss_pred cceEEeeccCccceeecCCCCCccccccccEEeeccc
Q 045686 718 LEILRIKCGFMKRLNIDQGLNNRPSFSALRRLSIILC 754 (885)
Q Consensus 718 L~~L~l~~~~l~~l~~~~~~~~~~~l~~L~~L~L~~c 754 (885)
|+.|++++|.++.++ . ...+++|+.|+++++
T Consensus 161 L~~L~l~~n~i~~~~-~-----l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 161 LKSLNIQFDGVHDYR-G-----IEDFPKLNQLYAFSQ 191 (197)
T ss_dssp CCEEECTTBCCCCCT-T-----GGGCSSCCEEEECBC
T ss_pred CCEEECCCCCCcChH-H-----hccCCCCCEEEeeCc
Confidence 777777666666543 1 123677777777776
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.40 E-value=3.8e-14 Score=146.99 Aligned_cols=123 Identities=20% Similarity=0.255 Sum_probs=81.7
Q ss_pred cceEEEecccCcccccccccCCCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCchhhhccccccee
Q 045686 513 HEAVRLSLWGSSIDFLALVEAPSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPEEIGRLKNLHHL 592 (885)
Q Consensus 513 ~~~~~l~l~~~~i~~~~~~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L 592 (885)
.++..+.+..+.+.. ++.+..+++|++|++++|.+.. ++. +..+++|++|+|++| .++.+|. ++++++|++|
T Consensus 19 ~~l~~l~l~~~~i~~--~~~~~~l~~L~~L~l~~n~i~~--l~~--l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L 90 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTD--LVSQKELSGVQNFNGDNSNIQS--LAG--MQFFTNLKELHLSHN-QISDLSP-LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHTCSCTTS--EECHHHHTTCSEEECTTSCCCC--CTT--GGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEE
T ss_pred HHHHHHHhcCCCccc--ccchhhcCcCcEEECcCCCccc--chH--HhhCCCCCEEECCCC-ccCCChh-hccCCCCCEE
Confidence 345555566666655 3445556677777777777666 652 667777777777777 6666666 7777777777
Q ss_pred eccCCcccccChhhhccccccEeecCCcccccccCCcccccCcccceecccccccc
Q 045686 593 NLSNTSIGCLPTAIKRLIKLKVLLLDGIQCHLSIPEGVISSLSSLQVFSCFSTELV 648 (885)
Q Consensus 593 ~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 648 (885)
++++|++..+|... . ++|++|++++|. +..++. +.++++|++|++++|.+.
T Consensus 91 ~L~~N~l~~l~~~~-~-~~L~~L~L~~N~-l~~~~~--l~~l~~L~~L~Ls~N~i~ 141 (263)
T 1xeu_A 91 SVNRNRLKNLNGIP-S-ACLSRLFLDNNE-LRDTDS--LIHLKNLEILSIRNNKLK 141 (263)
T ss_dssp ECCSSCCSCCTTCC-C-SSCCEEECCSSC-CSBSGG--GTTCTTCCEEECTTSCCC
T ss_pred ECCCCccCCcCccc-c-CcccEEEccCCc-cCCChh--hcCcccccEEECCCCcCC
Confidence 77777777666432 2 777777777775 555553 677777777777777664
No 117
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.39 E-value=2.2e-13 Score=137.10 Aligned_cols=126 Identities=21% Similarity=0.356 Sum_probs=105.6
Q ss_pred EEecccCcccccccccCCCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcC-chhhhcccccceeecc
Q 045686 517 RLSLWGSSIDFLALVEAPSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQL-PEEIGRLKNLHHLNLS 595 (885)
Q Consensus 517 ~l~l~~~~i~~~~~~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~l-p~~i~~L~~L~~L~Ls 595 (885)
.++..++.++. +|... .++|+.|++++|.+.. ++...|..+++|++|+|++| .+..+ |..+.++++|++|+|+
T Consensus 15 ~v~c~~~~l~~--iP~~l-~~~l~~L~l~~n~i~~--i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls 88 (220)
T 2v9t_B 15 IVDCRGKGLTE--IPTNL-PETITEIRLEQNTIKV--IPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLY 88 (220)
T ss_dssp EEECTTSCCSS--CCSSC-CTTCCEEECCSSCCCE--ECTTSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECC
T ss_pred EEEcCCCCcCc--CCCcc-CcCCCEEECCCCcCCC--cCHhHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECC
Confidence 46666677666 33321 2689999999999988 88777999999999999999 67665 7889999999999999
Q ss_pred CCcccccChh-hhccccccEeecCCcccccccCCcccccCcccceeccccccccc
Q 045686 596 NTSIGCLPTA-IKRLIKLKVLLLDGIQCHLSIPEGVISSLSSLQVFSCFSTELVE 649 (885)
Q Consensus 596 ~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~ 649 (885)
+|.|..+|.. +..+++|++|++++|. +..++...+..+++|++|++++|.+.+
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~ 142 (220)
T 2v9t_B 89 GNKITELPKSLFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNKLQT 142 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCcCCccCHhHccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCcCCE
Confidence 9999999987 6889999999999997 777766668999999999999998865
No 118
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.39 E-value=4.2e-13 Score=134.02 Aligned_cols=134 Identities=27% Similarity=0.338 Sum_probs=108.0
Q ss_pred ccceEEEecccCcccccccccCCCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCchh-hhcccccc
Q 045686 512 WHEAVRLSLWGSSIDFLALVEAPSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPEE-IGRLKNLH 590 (885)
Q Consensus 512 ~~~~~~l~l~~~~i~~~~~~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~-i~~L~~L~ 590 (885)
.+++++|++.+|.+.......+..+++|++|++++|.+.. ++...|..+++|++|+|++| .++.+|.. ++++++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~ 103 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS--LPNGVFNKLTSLTYLNLSTN-QLQSLPNGVFDKLTQLK 103 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC--CCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCC
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCc--cChhhcCCCCCcCEEECCCC-cCCccCHhHhcCccCCC
Confidence 3478889999888876433346778889999999988887 88777888899999999988 77777654 57888999
Q ss_pred eeeccCCcccccChh-hhccccccEeecCCcccccccCCcccccCcccceeccccccccc
Q 045686 591 HLNLSNTSIGCLPTA-IKRLIKLKVLLLDGIQCHLSIPEGVISSLSSLQVFSCFSTELVE 649 (885)
Q Consensus 591 ~L~Ls~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~ 649 (885)
+|++++|++..+|.. +.++++|++|++++|. +..+|...+..+++|++|++++|.+.+
T Consensus 104 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~~ 162 (208)
T 2o6s_A 104 ELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPWDC 162 (208)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCBCC
T ss_pred EEEcCCCcCcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCCeec
Confidence 999999988888766 6788899999999886 667777667888899999998887653
No 119
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.38 E-value=5.8e-12 Score=138.98 Aligned_cols=305 Identities=12% Similarity=0.122 Sum_probs=178.2
Q ss_pred CCccchhHHHHHHHHHhh----cCCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHH
Q 045686 152 GKTVGLDSIISEVWRCIE----DHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILR 227 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~----~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~ 227 (885)
..++||+++++.+.+++. ......+.|+|++|+||||||+.+++........-..++|+.+....+...++..++.
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~ 99 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLE 99 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTT
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHH
Confidence 679999999999999886 3556789999999999999999999876421110224677877776677788888888
Q ss_pred HcCCCccccCCCChhHHHHHHHHHhc--CCCeEEEEecCCCcccc---cccccccccccc-CCCCCEEEEEcCChhHHhh
Q 045686 228 RFEIPDQMWIGKDEDGRANEILSNLR--GKKFVLLLDDVWERLDL---SKVGVSDLLDDS-SQTGSKIVFTTRSEEVCGE 301 (885)
Q Consensus 228 ~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVLDdv~~~~~~---~~~~~~~~l~~~-~~~gs~IivTTR~~~v~~~ 301 (885)
.++..... .+.+..+....+.+.+. +++.+||+||++...+. ..+...+..... ...+..+|+||+.......
T Consensus 100 ~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~ 178 (386)
T 2qby_A 100 SLDVKVPF-TGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDL 178 (386)
T ss_dssp TTSCCCCS-SSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGG
T ss_pred HhCCCCCC-CCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhh
Confidence 88764321 23345555666666665 34899999999764321 111111100000 2335677888887643322
Q ss_pred hc-------ccceeeccCCChHHHHHHHHHHhcCc--ccCCccchHHHHHHHHHHhC---CchhHHHHHH-HHHh-----
Q 045686 302 MG-------ARRRFRVECLSPEAALDLFRYKVGED--VYSSHFEISNLAQTVVEECR---GLPLALVTIG-HAMA----- 363 (885)
Q Consensus 302 ~~-------~~~~~~l~~L~~~~~~~Lf~~~~~~~--~~~~~~~~~~~~~~I~~~c~---GlPLai~~~~-~~l~----- 363 (885)
+. ....+.+.+++.++..+++.+.+... ....+ .+..+.|++.++ |.|..+..+. ....
T Consensus 179 ~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~ 255 (386)
T 2qby_A 179 LDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLP---DNVIKLCAALAAREHGDARRALDLLRVSGEIAERM 255 (386)
T ss_dssp CTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSC---HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred hCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc
Confidence 21 11478999999999999999865321 11122 345677888887 9998443332 2221
Q ss_pred c--CCChhhHHHHHHHHhcCcccccCCCCcccccccccccccccchhhhHHhhhccCCC-C-ceecHHHHHHHH--Hh--
Q 045686 364 S--RMGPTQWRYAVGELQRYPFKFAGMGNSVFPILRFSYDSLREDIFKTCFLYCALFPE-E-HNITKDELIQLW--IG-- 435 (885)
Q Consensus 364 ~--~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~s~fp~-~-~~i~~~~li~~w--~a-- 435 (885)
. .-+.+.+..+.+.... ..+.-++..+|.. .+..+..++...+ + ..+....+.+.. ++
T Consensus 256 ~~~~i~~~~v~~a~~~~~~-------------~~~~~~~~~l~~~-~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~ 321 (386)
T 2qby_A 256 KDTKVKEEYVYMAKEEIER-------------DRVRDIILTLPFH-SKLVLMAVVSISSEENVVSTTGAVYETYLNICKK 321 (386)
T ss_dssp TCSSCCHHHHHHHHHHHHH-------------HHHHHHHHTSCHH-HHHHHHHHHHHC-----CEEHHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHhh-------------chHHHHHHcCCHH-HHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHh
Confidence 1 1244555555443321 2344456677764 4555554542211 1 224443332221 11
Q ss_pred cCcCCCCCCCChHHHHHHHHHHhcccccC---CCCCCcEEEehh
Q 045686 436 EGFLNGISPRDQGEYIIESLKLACLLERG---ENSEDSVKMHNL 476 (885)
Q Consensus 436 ~g~~~~~~~~~~~~~~l~~L~~~~ll~~~---~~~~~~~~mHdl 476 (885)
.| +.+ -.......+++.|...++++.. .+..+.|+.+.+
T Consensus 322 ~g-~~~-~~~~~~~~~l~~L~~~gli~~~~~~~~~~g~y~~~~l 363 (386)
T 2qby_A 322 LG-VEA-VTQRRVSDIINELDMVGILTAKVVNRGRYGKTKEIGL 363 (386)
T ss_dssp HT-CCC-CCHHHHHHHHHHHHHHTSEEEEECCCTTSCCCEEEEE
T ss_pred cC-CCC-CCHHHHHHHHHHHHhCCCEEEEeecCCCCCCeEEEEe
Confidence 12 111 1224567889999999999763 222445655543
No 120
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.38 E-value=9.8e-12 Score=137.21 Aligned_cols=304 Identities=12% Similarity=0.082 Sum_probs=183.2
Q ss_pred CCccchhHHHHHHHHHhhc----CCCeEEEEEcCCCCcHHHHHHHHHhhhccCC---CCccEEEEEEEcCcccHHHHHHH
Q 045686 152 GKTVGLDSIISEVWRCIED----HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTG---HDFDLVIWVKVSRDANLEKIQES 224 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~----~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~---~~f~~~~wv~v~~~~~~~~~~~~ 224 (885)
+.++||+++++++.+++.. .....+.|+|++|+||||+|+.+++...... +.-...+|+++....+...++..
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 98 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASA 98 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHH
Confidence 6799999999999998843 4567899999999999999999998763210 00224677887777788889999
Q ss_pred HHHHcCCCccccCCCChhHHHHHHHHHhc--CCCeEEEEecCCCcccc----cccccccccccc-C-CCCCEEEEEcCCh
Q 045686 225 ILRRFEIPDQMWIGKDEDGRANEILSNLR--GKKFVLLLDDVWERLDL----SKVGVSDLLDDS-S-QTGSKIVFTTRSE 296 (885)
Q Consensus 225 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVLDdv~~~~~~----~~~~~~~~l~~~-~-~~gs~IivTTR~~ 296 (885)
++.+++..... .+....+....+...+. +++.+||+||++..... ..+...+..... . ..+..+|+||+..
T Consensus 99 l~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~ 177 (387)
T 2v1u_A 99 IAEAVGVRVPF-TGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSL 177 (387)
T ss_dssp HHHHHSCCCCS-SCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCS
T ss_pred HHHHhCCCCCC-CCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCC
Confidence 99998765422 33445666667776663 45789999999864321 111111110001 1 3466788888765
Q ss_pred hH--------HhhhcccceeeccCCChHHHHHHHHHHhcC--cccCCccchHHHHHHHHHHhC---CchhHH-HHHHHHH
Q 045686 297 EV--------CGEMGARRRFRVECLSPEAALDLFRYKVGE--DVYSSHFEISNLAQTVVEECR---GLPLAL-VTIGHAM 362 (885)
Q Consensus 297 ~v--------~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~--~~~~~~~~~~~~~~~I~~~c~---GlPLai-~~~~~~l 362 (885)
+. ...+ ....+.+.+++.++..+++.+.+.. .....++ +..+.|++.++ |.|..+ ..+..+.
T Consensus 178 ~~~~~l~~~l~~r~-~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~G~~r~~~~~l~~a~ 253 (387)
T 2v1u_A 178 GFVENLEPRVKSSL-GEVELVFPPYTAPQLRDILETRAEEAFNPGVLDP---DVVPLCAALAAREHGDARRALDLLRVAG 253 (387)
T ss_dssp TTSSSSCHHHHTTT-TSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCS---SHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred chHhhhCHHHHhcC-CCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCH---HHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 32 2211 1147899999999999999987632 1111222 24678888888 999433 3332222
Q ss_pred h-----c--CCChhhHHHHHHHHhcCcccccCCCCcccccccccccccccchhhhHHhhhc-cCCCCceecHHHHHHHH-
Q 045686 363 A-----S--RMGPTQWRYAVGELQRYPFKFAGMGNSVFPILRFSYDSLREDIFKTCFLYCA-LFPEEHNITKDELIQLW- 433 (885)
Q Consensus 363 ~-----~--~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~s-~fp~~~~i~~~~li~~w- 433 (885)
. + .-+.+.+..+++.... ..+.-++..|+.+ .+..+..++ ++.....+....+.+..
T Consensus 254 ~~a~~~~~~~i~~~~v~~a~~~~~~-------------~~~~~~~~~l~~~-~~~~l~a~~~~~~~~~~~~~~~~~~~~~ 319 (387)
T 2v1u_A 254 EIAERRREERVRREHVYSARAEIER-------------DRVSEVVRTLPLH-AKLVLLSIMMLEDGGRPASTGEIYERYK 319 (387)
T ss_dssp HHHHHTTCSCBCHHHHHHHHHHHHH-------------HHHHHHHHSSCHH-HHHHHHHHHHHSSSSCCEEHHHHHHHHH
T ss_pred HHHHHcCCCCcCHHHHHHHHHHHhh-------------chHHHHHHcCCHH-HHHHHHHHHHHhcCCCCCcHHHHHHHHH
Confidence 1 1 1245566665554321 1244456778875 455554444 33322345555444332
Q ss_pred ---HhcCcCCCCCCCChHHHHHHHHHHhcccccCC---CCCCcEEEehh
Q 045686 434 ---IGEGFLNGISPRDQGEYIIESLKLACLLERGE---NSEDSVKMHNL 476 (885)
Q Consensus 434 ---~a~g~~~~~~~~~~~~~~l~~L~~~~ll~~~~---~~~~~~~mHdl 476 (885)
-..| .. .........+++.|...++++... +..+.++.+.+
T Consensus 320 ~~~~~~~-~~-~~~~~~~~~~l~~L~~~gli~~~~~~~g~~g~~~~~~l 366 (387)
T 2v1u_A 320 ELTSTLG-LE-HVTLRRVSGIISELDMLGIVKSRVVSRGRYGKTREVSL 366 (387)
T ss_dssp HHHHHTT-CC-CCCHHHHHHHHHHHHHTTSEEEEEEECGGGCEEEEEEE
T ss_pred HHHHhcC-CC-CCCHHHHHHHHHHHHhCCCeEEEeecCCCCCceeEEEe
Confidence 1223 11 123356788999999999998732 22444555443
No 121
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.38 E-value=2.2e-14 Score=165.06 Aligned_cols=119 Identities=19% Similarity=0.228 Sum_probs=65.7
Q ss_pred ceeEEeccccccccc-hhhhhhccceEEeeccCccceeecCCCCCccccccccEEeeccccCCccccccccCCCccEEeE
Q 045686 696 IRRLTIESSELLSLE-LGLMLSHLEILRIKCGFMKRLNIDQGLNNRPSFSALRRLSIILCPDIQNLTCLVHVPSLQFLSL 774 (885)
Q Consensus 696 L~~L~l~~~~~~~~~-l~~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L 774 (885)
|+.|++++|.+..++ +..+ ++|+.|+++.|.++.+|.... .+++|+.|+|++| .++.+|.++.+++|+.|+|
T Consensus 443 L~~L~Ls~n~l~~lp~~~~l-~~L~~L~Ls~N~l~~lp~~~~-----~l~~L~~L~Ls~N-~l~~lp~l~~l~~L~~L~L 515 (567)
T 1dce_A 443 VRVLHLAHKDLTVLCHLEQL-LLVTHLDLSHNRLRALPPALA-----ALRCLEVLQASDN-ALENVDGVANLPRLQELLL 515 (567)
T ss_dssp CSEEECTTSCCSSCCCGGGG-TTCCEEECCSSCCCCCCGGGG-----GCTTCCEEECCSS-CCCCCGGGTTCSSCCEEEC
T ss_pred ceEEEecCCCCCCCcCcccc-ccCcEeecCcccccccchhhh-----cCCCCCEEECCCC-CCCCCcccCCCCCCcEEEC
Confidence 566666666644433 3332 666667666666665544332 2666777777666 5666666666667777777
Q ss_pred eccCCchhhhcccccCCCcccccccccceeccccccccccccCCc----cCCCCccEEe
Q 045686 775 SNCHSLEEIVGTYASGSSESRNYFSNLMAVDLDGLPTLRSICSGT----VAFPSLQTLS 829 (885)
Q Consensus 775 ~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~----~~~p~L~~L~ 829 (885)
++|. ++.++ .+..+..+++|+.|+|++|+ +..++... ..+|+|+.|+
T Consensus 516 s~N~-l~~~~------~p~~l~~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 516 CNNR-LQQSA------AIQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CSSC-CCSSS------TTGGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCC-CCCCC------CcHHHhcCCCCCEEEecCCc-CCCCccHHHHHHHHCcccCccC
Confidence 6663 33331 01345566666666666643 33333221 1255665554
No 122
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.38 E-value=2.9e-11 Score=133.51 Aligned_cols=291 Identities=17% Similarity=0.142 Sum_probs=178.4
Q ss_pred CCccchhHHHHHHHHHhhc----CCCe--EEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHH
Q 045686 152 GKTVGLDSIISEVWRCIED----HNEK--VIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESI 225 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~----~~~~--vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 225 (885)
+.++||+++++++.+++.. .... .+.|+|++|+||||||+.+++.... ..-..++|+.++...+...++..+
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~l 94 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKD--KTTARFVYINGFIYRNFTAIIGEI 94 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTT--SCCCEEEEEETTTCCSHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhh--hcCeeEEEEeCccCCCHHHHHHHH
Confidence 6799999999999998854 3334 8999999999999999999988742 111246777777777788899999
Q ss_pred HHHcCCCccccCCCChhHHHHHHHHHhc--CCCeEEEEecCCCccc--cccccccccccccCC---CCCEEEEEcCChhH
Q 045686 226 LRRFEIPDQMWIGKDEDGRANEILSNLR--GKKFVLLLDDVWERLD--LSKVGVSDLLDDSSQ---TGSKIVFTTRSEEV 298 (885)
Q Consensus 226 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVLDdv~~~~~--~~~~~~~~~l~~~~~---~gs~IivTTR~~~v 298 (885)
+..++..... ...........+...+. +++.+||+||++.... ...+..... .... .+..||+||+..++
T Consensus 95 ~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~--~~~~~~~~~~~iI~~~~~~~~ 171 (389)
T 1fnn_A 95 ARSLNIPFPR-RGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQ--EADKLGAFRIALVIVGHNDAV 171 (389)
T ss_dssp HHHTTCCCCS-SCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTT--CHHHHSSCCEEEEEEESSTHH
T ss_pred HHHhCccCCC-CCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHH--hCCCCCcCCEEEEEEECCchH
Confidence 9998765321 23345566666666554 5688999999976411 111111110 0111 46788888887654
Q ss_pred Hhhhc-------ccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHh---------CCchhHHHHHHHHH
Q 045686 299 CGEMG-------ARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEEC---------RGLPLALVTIGHAM 362 (885)
Q Consensus 299 ~~~~~-------~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c---------~GlPLai~~~~~~l 362 (885)
...+. ....+.+.+++.++..+++...+....... .--.+..+.|++.+ +|.|..+..+....
T Consensus 172 ~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a 250 (389)
T 1fnn_A 172 LNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEG-SYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRS 250 (389)
T ss_dssp HHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTT-SSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHH
T ss_pred HHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCC-CCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHH
Confidence 33221 113689999999999999988764211000 11134678899999 78876544433322
Q ss_pred hc-----C---CChhhHHHHHHHHhcCcccccCCCCcccccccccccccccchhhhHHhhhccCC---CCceecHHHHHH
Q 045686 363 AS-----R---MGPTQWRYAVGELQRYPFKFAGMGNSVFPILRFSYDSLREDIFKTCFLYCALFP---EEHNITKDELIQ 431 (885)
Q Consensus 363 ~~-----~---~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~s~fp---~~~~i~~~~li~ 431 (885)
.. . -+.+....+..... ...+.-.+..|+.+ .+.++..++.+. .+..+....+..
T Consensus 251 ~~~a~~~~~~~i~~~~v~~~~~~~~-------------~~~~~~~l~~l~~~-~~~~L~~l~~~~~~~~~~~~~~~~i~~ 316 (389)
T 1fnn_A 251 AYAAQQNGRKHIAPEDVRKSSKEVL-------------FGISEEVLIGLPLH-EKLFLLAIVRSLKISHTPYITFGDAEE 316 (389)
T ss_dssp HHHHHHTTCSSCCHHHHHHHHHHHS-------------CCCCHHHHHHSCHH-HHHHHHHHHHHHHHHCSSCEEHHHHHH
T ss_pred HHHHHHhCCCCcCHHHHHHHHHHHh-------------hhhHHHHHHcCCHH-HHHHHHHHHHHHhhccCCCccHHHHHH
Confidence 11 1 12222223222211 12233445677775 566666666543 222566666665
Q ss_pred HHHh----cCcCCCCCCCChHHHHHHHHHHhcccccC
Q 045686 432 LWIG----EGFLNGISPRDQGEYIIESLKLACLLERG 464 (885)
Q Consensus 432 ~w~a----~g~~~~~~~~~~~~~~l~~L~~~~ll~~~ 464 (885)
.+.. .|... -.......++++|...+++...
T Consensus 317 ~~~~~~~~~~~~~--~~~~~~~~~l~~L~~~gli~~~ 351 (389)
T 1fnn_A 317 SYKIVCEEYGERP--RVHSQLWSYLNDLREKGIVETR 351 (389)
T ss_dssp HHHHHHHHTTCCC--CCHHHHHHHHHHHHHTTSSEEE
T ss_pred HHHHHHHHcCCCC--CCHHHHHHHHHHHHhCCCeEEe
Confidence 5433 22111 1234567889999999999763
No 123
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.38 E-value=2.1e-13 Score=119.55 Aligned_cols=77 Identities=6% Similarity=0.122 Sum_probs=68.0
Q ss_pred cccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCChhhHHHHHHHHHHHHHHHHHHHHh
Q 045686 11 YLVCPLCGVISKHCGYVCGLTDSLNSLREARRDLENITRDVEARVDLAVEQR-SRPRHEVNGWLESAQFMLREVDGILQR 89 (885)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~i~~~~~~ae~~~-~~~~~~v~~Wl~~~~~~~~~~ed~ld~ 89 (885)
++++ |++++.+|+..+.|++++++.|+++|+.|+++|.+ |++++ ...++.++.|+++||+++||+||++|+
T Consensus 6 ll~K-L~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~d-------a~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~ 77 (115)
T 3qfl_A 6 LIPK-LGELLTEEFKLHKGVKKNIEDLGKELESMNAALIK-------IGEVPREQLDSQDKLWADEVRELSYVIEDVVDK 77 (115)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH-------HHHhccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888 99999999999999999999999999999988766 55542 123788999999999999999999999
Q ss_pred chHHhh
Q 045686 90 GDEEIQ 95 (885)
Q Consensus 90 ~~~~~~ 95 (885)
|.++..
T Consensus 78 f~~~~~ 83 (115)
T 3qfl_A 78 FLVQVD 83 (115)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 988765
No 124
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.37 E-value=1.9e-12 Score=129.18 Aligned_cols=83 Identities=30% Similarity=0.464 Sum_probs=40.8
Q ss_pred CcccEEecCCCCCCCcCchh-hhcccccceeeccCCcccccChh-hhccccccEeecCCcccccccCCcccccCccccee
Q 045686 563 DALEVLDLSYNLDLNQLPEE-IGRLKNLHHLNLSNTSIGCLPTA-IKRLIKLKVLLLDGIQCHLSIPEGVISSLSSLQVF 640 (885)
Q Consensus 563 ~~L~~L~Ls~~~~i~~lp~~-i~~L~~L~~L~Ls~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L 640 (885)
++|++|++++| .++.+|.. ++++++|++|++++|++..+|.. +..+++|++|++++|. +..+|...+.++++|++|
T Consensus 28 ~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L 105 (208)
T 2o6s_A 28 AQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ-LQSLPNGVFDKLTQLKEL 105 (208)
T ss_dssp TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred CCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc-CCccCHhHhcCccCCCEE
Confidence 34555555555 44444332 34555555555555555554443 3445555555555553 444444434455555555
Q ss_pred ccccccc
Q 045686 641 SCFSTEL 647 (885)
Q Consensus 641 ~l~~~~~ 647 (885)
++++|.+
T Consensus 106 ~L~~N~l 112 (208)
T 2o6s_A 106 ALNTNQL 112 (208)
T ss_dssp ECCSSCC
T ss_pred EcCCCcC
Confidence 5554443
No 125
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.36 E-value=5.9e-13 Score=133.96 Aligned_cols=126 Identities=14% Similarity=0.236 Sum_probs=81.0
Q ss_pred EEecccCcccccccccCCCCchhHHHHHhhcCCccCCC-CchhhhcCCcccEEecCCCCCCCcCch-hhhcccccceeec
Q 045686 517 RLSLWGSSIDFLALVEAPSCPQVRTLLARLTMLHTLPI-PSRFFDSMDALEVLDLSYNLDLNQLPE-EIGRLKNLHHLNL 594 (885)
Q Consensus 517 ~l~l~~~~i~~~~~~~~~~~~~Lr~L~l~~~~l~~~~~-~~~~~~~l~~L~~L~Ls~~~~i~~lp~-~i~~L~~L~~L~L 594 (885)
.+++++|.++. +|.. -.+.++.|++++|.+.. + +..+|..+++|++|+|++| .++.++. .++++++|++|+|
T Consensus 15 ~l~~s~n~l~~--iP~~-~~~~~~~L~L~~N~l~~--~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~L 88 (220)
T 2v70_A 15 TVDCSNQKLNK--IPEH-IPQYTAELRLNNNEFTV--LEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILL 88 (220)
T ss_dssp EEECCSSCCSS--CCSC-CCTTCSEEECCSSCCCE--ECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEEC
T ss_pred EeEeCCCCccc--CccC-CCCCCCEEEcCCCcCCc--cCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEEC
Confidence 55666666655 3321 12345667777776665 4 3344677777777777777 5655544 5677777777777
Q ss_pred cCCcccccChh-hhccccccEeecCCcccccccCCcccccCcccceeccccccccc
Q 045686 595 SNTSIGCLPTA-IKRLIKLKVLLLDGIQCHLSIPEGVISSLSSLQVFSCFSTELVE 649 (885)
Q Consensus 595 s~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~ 649 (885)
++|.+..+|.. +..+++|++|++++|. +..++...+.++++|++|++++|.+.+
T Consensus 89 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~ 143 (220)
T 2v70_A 89 TSNRLENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQITT 143 (220)
T ss_dssp CSSCCCCCCGGGGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTSCCCC
T ss_pred CCCccCccCHhHhcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCCcCCE
Confidence 77777666654 6677777777777775 555544446777777777777776654
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.35 E-value=6.2e-13 Score=124.89 Aligned_cols=125 Identities=25% Similarity=0.234 Sum_probs=79.1
Q ss_pred cceEEEecccCcccccccc-cCCCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCc-Cchhhhcccccc
Q 045686 513 HEAVRLSLWGSSIDFLALV-EAPSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQ-LPEEIGRLKNLH 590 (885)
Q Consensus 513 ~~~~~l~l~~~~i~~~~~~-~~~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~-lp~~i~~L~~L~ 590 (885)
+++++|++.+|.+....++ .+..+++|++|++++|.+.. + ..+..+++|++|++++| .+.. +|..++.+++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~--~--~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS--I--ANLPKLNKLKKLELSDN-RVSGGLEVLAEKCPNLT 91 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCC--C--TTCCCCTTCCEEECCSS-CCCSCTHHHHHHCTTCC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCC--c--hhhhcCCCCCEEECCCC-cccchHHHHhhhCCCCC
Confidence 4677777777776611133 33566677777777776665 4 23666777777777777 5554 666666677777
Q ss_pred eeeccCCcccccC--hhhhccccccEeecCCcccccccCC---cccccCcccceeccc
Q 045686 591 HLNLSNTSIGCLP--TAIKRLIKLKVLLLDGIQCHLSIPE---GVISSLSSLQVFSCF 643 (885)
Q Consensus 591 ~L~Ls~~~i~~lp--~~i~~L~~L~~L~l~~~~~l~~lp~---~~i~~L~~L~~L~l~ 643 (885)
+|++++|.+..+| ..++.+++|++|++++|. +..+|. ..+..+++|++|+++
T Consensus 92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EEECTTSCCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EEECCCCcCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCC
Confidence 7777777766654 556667777777777765 555554 336666677766654
No 127
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.35 E-value=9.9e-13 Score=133.27 Aligned_cols=126 Identities=23% Similarity=0.313 Sum_probs=106.6
Q ss_pred EEEecccCcccccccccCCCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCchh-hhcccccceeec
Q 045686 516 VRLSLWGSSIDFLALVEAPSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPEE-IGRLKNLHHLNL 594 (885)
Q Consensus 516 ~~l~l~~~~i~~~~~~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~-i~~L~~L~~L~L 594 (885)
+.++..++.+.. +|.. -.++|++|++++|.+.. +++..|..+++|++|+|++| .++.+|.. ++.+++|++|+|
T Consensus 22 ~~v~c~~~~l~~--ip~~-~~~~L~~L~Ls~n~i~~--~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~L 95 (229)
T 3e6j_A 22 TTVDCRSKRHAS--VPAG-IPTNAQILYLHDNQITK--LEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDL 95 (229)
T ss_dssp TEEECTTSCCSS--CCSC-CCTTCSEEECCSSCCCC--CCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred CEeEccCCCcCc--cCCC-CCCCCCEEEcCCCccCc--cCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEEC
Confidence 346667777666 4432 23899999999999988 87777899999999999999 78888754 688999999999
Q ss_pred cCCcccccChh-hhccccccEeecCCcccccccCCcccccCcccceeccccccccc
Q 045686 595 SNTSIGCLPTA-IKRLIKLKVLLLDGIQCHLSIPEGVISSLSSLQVFSCFSTELVE 649 (885)
Q Consensus 595 s~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~ 649 (885)
++|+|..+|.. +..+++|++|++++|. +..+|.. +.++++|++|++++|.+.+
T Consensus 96 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~-~~~l~~L~~L~L~~N~l~~ 149 (229)
T 3e6j_A 96 GTNQLTVLPSAVFDRLVHLKELFMCCNK-LTELPRG-IERLTHLTHLALDQNQLKS 149 (229)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSC-CCSCCTT-GGGCTTCSEEECCSSCCCC
T ss_pred CCCcCCccChhHhCcchhhCeEeccCCc-ccccCcc-cccCCCCCEEECCCCcCCc
Confidence 99999998876 6889999999999997 7899988 8999999999999998764
No 128
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.34 E-value=6.5e-13 Score=133.68 Aligned_cols=133 Identities=19% Similarity=0.250 Sum_probs=114.3
Q ss_pred cceEEEecccCccccccc-ccCCCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCch-hhhcccccc
Q 045686 513 HEAVRLSLWGSSIDFLAL-VEAPSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPE-EIGRLKNLH 590 (885)
Q Consensus 513 ~~~~~l~l~~~~i~~~~~-~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~-~i~~L~~L~ 590 (885)
..++.|++++|.+..... ..+..+++|++|++++|.+.. ++...|.++++|++|+|++| .++.+|. .++++++|+
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~--i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~ 108 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITD--IEEGAFEGASGVNEILLTSN-RLENVQHKMFKGLESLK 108 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCE--ECTTTTTTCTTCCEEECCSS-CCCCCCGGGGTTCSSCC
T ss_pred CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCE--ECHHHhCCCCCCCEEECCCC-ccCccCHhHhcCCcCCC
Confidence 467899999999987422 225789999999999999988 88877999999999999999 7776655 589999999
Q ss_pred eeeccCCccccc-ChhhhccccccEeecCCcccccccCCcccccCcccceeccccccccc
Q 045686 591 HLNLSNTSIGCL-PTAIKRLIKLKVLLLDGIQCHLSIPEGVISSLSSLQVFSCFSTELVE 649 (885)
Q Consensus 591 ~L~Ls~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~ 649 (885)
+|+|++|+|..+ |..+..+++|++|++++|. +..++...+..+++|++|++++|.+..
T Consensus 109 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 109 TLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp EEECTTSCCCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred EEECCCCcCCeECHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 999999999887 5669999999999999997 677755559999999999999998764
No 129
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.34 E-value=4.9e-13 Score=128.50 Aligned_cols=131 Identities=22% Similarity=0.185 Sum_probs=97.9
Q ss_pred cceEEEecccCccccccccc-CCCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCc-Cchhhhcccccc
Q 045686 513 HEAVRLSLWGSSIDFLALVE-APSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQ-LPEEIGRLKNLH 590 (885)
Q Consensus 513 ~~~~~l~l~~~~i~~~~~~~-~~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~-lp~~i~~L~~L~ 590 (885)
++++.|++.+|.+....++. +..+++|++|++++|.+.. + ..+..+++|++|+|++| .+.. +|..++++++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~--~--~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS--V--SNLPKLPKLKKLELSEN-RIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCC--C--SSCCCCSSCCEEEEESC-CCCSCCCHHHHHCTTCC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCC--h--hhhccCCCCCEEECcCC-cCchHHHHHHhhCCCCC
Confidence 46888888888877211443 3667888888888888776 5 33778888888888888 5655 777777788888
Q ss_pred eeeccCCcccccC--hhhhccccccEeecCCcccccccCC---cccccCcccceeccccccccc
Q 045686 591 HLNLSNTSIGCLP--TAIKRLIKLKVLLLDGIQCHLSIPE---GVISSLSSLQVFSCFSTELVE 649 (885)
Q Consensus 591 ~L~Ls~~~i~~lp--~~i~~L~~L~~L~l~~~~~l~~lp~---~~i~~L~~L~~L~l~~~~~~~ 649 (885)
+|++++|.+..+| ..+..+++|++|++++|. +..+|. ..+..+++|++|++++|....
T Consensus 99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred EEeccCCccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 8888888888776 567888888888888886 666665 347788888888888876543
No 130
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.34 E-value=3.2e-13 Score=130.83 Aligned_cols=126 Identities=18% Similarity=0.161 Sum_probs=59.9
Q ss_pred cceEEEecccCcccccccccCCCCc-hhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCchhh-hcccccc
Q 045686 513 HEAVRLSLWGSSIDFLALVEAPSCP-QVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPEEI-GRLKNLH 590 (885)
Q Consensus 513 ~~~~~l~l~~~~i~~~~~~~~~~~~-~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i-~~L~~L~ 590 (885)
.+++.|++.+|.+.. ++.+..+. +|++|++++|.+.. ++ .|..+++|++|+|++| .++.+|..+ +.+++|+
T Consensus 19 ~~L~~L~l~~n~l~~--i~~~~~~~~~L~~L~Ls~N~l~~--~~--~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 19 VRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEIRK--LD--GFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLT 91 (176)
T ss_dssp TSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSCCCE--EC--CCCCCSSCCEEECCSS-CCCEECSCHHHHCTTCC
T ss_pred CCceEEEeeCCCCch--hHHhhhcCCCCCEEECCCCCCCc--cc--ccccCCCCCEEECCCC-cccccCcchhhcCCCCC
Confidence 345555555555544 23333322 45555555555444 32 1444555555555555 444444332 4455555
Q ss_pred eeeccCCcccccCh--hhhccccccEeecCCcccccccCCc---ccccCcccceecccccc
Q 045686 591 HLNLSNTSIGCLPT--AIKRLIKLKVLLLDGIQCHLSIPEG---VISSLSSLQVFSCFSTE 646 (885)
Q Consensus 591 ~L~Ls~~~i~~lp~--~i~~L~~L~~L~l~~~~~l~~lp~~---~i~~L~~L~~L~l~~~~ 646 (885)
+|++++|.|..+|. .+..+++|++|++++|. +..+|.. ++..+++|++|+++.|.
T Consensus 92 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 92 ELILTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred EEECCCCcCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 55555555555444 44455555555555554 3344432 24445555555554443
No 131
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.31 E-value=8.2e-13 Score=144.06 Aligned_cols=133 Identities=27% Similarity=0.290 Sum_probs=89.8
Q ss_pred cceEEEecccCcccccccccCC-CCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCch-hhhcccccc
Q 045686 513 HEAVRLSLWGSSIDFLALVEAP-SCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPE-EIGRLKNLH 590 (885)
Q Consensus 513 ~~~~~l~l~~~~i~~~~~~~~~-~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~-~i~~L~~L~ 590 (885)
..++.|++++|.++......+. .+++|++|++++|.+.. ++...|..+++|++|+|++| .++.+|. .+.++++|+
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~--i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~ 115 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF--ISSEAFVPVPNLRYLDLSSN-HLHTLDEFLFSDLQALE 115 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCE--ECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCC
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCc--cChhhccCCCCCCEEECCCC-cCCcCCHHHhCCCcCCC
Confidence 3567777777777664333344 67777777777777776 66656777777777777777 5665544 466777777
Q ss_pred eeeccCCccccc-ChhhhccccccEeecCCcccccccCCccc---ccCcccceeccccccccc
Q 045686 591 HLNLSNTSIGCL-PTAIKRLIKLKVLLLDGIQCHLSIPEGVI---SSLSSLQVFSCFSTELVE 649 (885)
Q Consensus 591 ~L~Ls~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~~i---~~L~~L~~L~l~~~~~~~ 649 (885)
+|+|++|+|..+ |..+.++++|++|+|++|. +..+|...+ ..+++|++|++++|.+..
T Consensus 116 ~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 116 VLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred EEECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 777777777666 3457777777777777775 666776644 457777777777776653
No 132
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.28 E-value=1e-12 Score=127.23 Aligned_cols=138 Identities=17% Similarity=0.215 Sum_probs=109.1
Q ss_pred ccCCCCchhHHHHHhhcCCccCCCCchhhhcCC-cccEEecCCCCCCCcCchhhhcccccceeeccCCcccccChhh-hc
Q 045686 531 VEAPSCPQVRTLLARLTMLHTLPIPSRFFDSMD-ALEVLDLSYNLDLNQLPEEIGRLKNLHHLNLSNTSIGCLPTAI-KR 608 (885)
Q Consensus 531 ~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~-~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~Ls~~~i~~lp~~i-~~ 608 (885)
+.+..+++|+.|++++|.+.. ++. +..+. +|++|++++| .++.+ ..++.+++|++|++++|.|..+|..+ ..
T Consensus 13 ~~~~~~~~L~~L~l~~n~l~~--i~~--~~~~~~~L~~L~Ls~N-~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~ 86 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKIPV--IEN--LGATLDQFDAIDFSDN-EIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQA 86 (176)
T ss_dssp CEEECTTSCEEEECTTSCCCS--CCC--GGGGTTCCSEEECCSS-CCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHH
T ss_pred HhcCCcCCceEEEeeCCCCch--hHH--hhhcCCCCCEEECCCC-CCCcc-cccccCCCCCEEECCCCcccccCcchhhc
Confidence 445678899999999999987 765 44444 9999999999 88877 57899999999999999999998765 89
Q ss_pred cccccEeecCCcccccccCC-cccccCcccceecccccccccccCcccccccchhhhcCccCCcceeEEEechh
Q 045686 609 LIKLKVLLLDGIQCHLSIPE-GVISSLSSLQVFSCFSTELVELIDPLFNETAILDELNCLEHLNDLSLTLFSTE 681 (885)
Q Consensus 609 L~~L~~L~l~~~~~l~~lp~-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~L~l~~~~~~ 681 (885)
+++|++|++++|. +..+|. ..+..+++|++|++++|.+... + ......+..+++|+.|++..+...
T Consensus 87 l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i~~~-~-----~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 87 LPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNPVTNK-K-----HYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGGGS-T-----THHHHHHHHCTTCSEETTEECCHH
T ss_pred CCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCCCCCc-H-----hHHHHHHHHCCccceeCCCcCCHH
Confidence 9999999999997 788886 2388999999999999988641 1 011123566777777777765543
No 133
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.28 E-value=1.3e-12 Score=125.43 Aligned_cols=135 Identities=23% Similarity=0.189 Sum_probs=105.0
Q ss_pred CCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCchhhhcccccceeeccCCcccc-cChhhhcccccc
Q 045686 535 SCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPEEIGRLKNLHHLNLSNTSIGC-LPTAIKRLIKLK 613 (885)
Q Consensus 535 ~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~Ls~~~i~~-lp~~i~~L~~L~ 613 (885)
..++|++|++++|.+....+|.. +..+++|++|++++| .++.+ ..++.+++|++|++++|.+.. +|..+.++++|+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINV-GLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESS-CCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred CcccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCC-CCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence 34789999999998871127765 788999999999999 78877 778999999999999999977 787788899999
Q ss_pred EeecCCcccccccCC-cccccCcccceecccccccccccCcccccccchhhhcCccCCcceeEEEec
Q 045686 614 VLLLDGIQCHLSIPE-GVISSLSSLQVFSCFSTELVELIDPLFNETAILDELNCLEHLNDLSLTLFS 679 (885)
Q Consensus 614 ~L~l~~~~~l~~lp~-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~L~l~~~~ 679 (885)
+|++++|. +..+|. ..+..+++|++|++++|.+.+..+ .....+..+++|+.|++..+.
T Consensus 99 ~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~------~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 99 HLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCEVTNLND------YRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp EEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSGGGTSTT------HHHHHHTTCSSCCEETTEETT
T ss_pred EEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCcCcchHH------HHHHHHHhCccCcEecCCCCC
Confidence 99999996 777762 338899999999999998864210 011345667777776665543
No 134
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.27 E-value=2.9e-12 Score=152.30 Aligned_cols=149 Identities=21% Similarity=0.182 Sum_probs=86.3
Q ss_pred cceEEEecccCcccccccccCCCCchhHHHH-----HhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCchhhhccc
Q 045686 513 HEAVRLSLWGSSIDFLALVEAPSCPQVRTLL-----ARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPEEIGRLK 587 (885)
Q Consensus 513 ~~~~~l~l~~~~i~~~~~~~~~~~~~Lr~L~-----l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~ 587 (885)
..++++++..|.+... ........+|+.+. +..|.+. ++...|..+..|++|+|++| .+..+|..+++++
T Consensus 173 ~~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~i~~~~~~~n~~~---~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~~l~ 247 (727)
T 4b8c_D 173 PLTPKIELFANGKDEA-NQALLQHKKLSQYSIDEDDDIENRMV---MPKDSKYDDQLWHALDLSNL-QIFNISANIFKYD 247 (727)
T ss_dssp -----------------------------------------------------CCCCCCEEECTTS-CCSCCCGGGGGCC
T ss_pred CccceEEeeCCCCCcc-hhhHhhcCccCcccccCcccccccee---cChhhhccCCCCcEEECCCC-CCCCCChhhcCCC
Confidence 3577788877766552 11122222333322 2223332 44555888899999999999 7888998888999
Q ss_pred ccceeeccCCcccccChhhhccccccEeecCCcccccccCCcccccCcccceecccccccccccCcccccccchhhhcCc
Q 045686 588 NLHHLNLSNTSIGCLPTAIKRLIKLKVLLLDGIQCHLSIPEGVISSLSSLQVFSCFSTELVELIDPLFNETAILDELNCL 667 (885)
Q Consensus 588 ~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L 667 (885)
+|++|+|++|.|..+|..+++|++|++|+|++|. +..+|.. +++|++|++|++++|.+.. ....+..|
T Consensus 248 ~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~-~~~l~~L~~L~L~~N~l~~----------lp~~~~~l 315 (727)
T 4b8c_D 248 FLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAE-LGSCFQLKYFYFFDNMVTT----------LPWEFGNL 315 (727)
T ss_dssp SCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSS-GGGGTTCSEEECCSSCCCC----------CCSSTTSC
T ss_pred CCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChh-hcCCCCCCEEECCCCCCCc----------cChhhhcC
Confidence 9999999999999999889999999999999997 6688887 8899999999999887753 22335666
Q ss_pred cCCcceeEEEe
Q 045686 668 EHLNDLSLTLF 678 (885)
Q Consensus 668 ~~L~~L~l~~~ 678 (885)
++|+.|+++.+
T Consensus 316 ~~L~~L~L~~N 326 (727)
T 4b8c_D 316 CNLQFLGVEGN 326 (727)
T ss_dssp TTCCCEECTTS
T ss_pred CCccEEeCCCC
Confidence 66666665544
No 135
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.27 E-value=1.2e-12 Score=142.74 Aligned_cols=152 Identities=20% Similarity=0.182 Sum_probs=115.1
Q ss_pred EEEecccCcccccccccCCCCchhHHHHHhhcCCccCCCCchhhh-cCCcccEEecCCCCCCCcCc-hhhhcccccceee
Q 045686 516 VRLSLWGSSIDFLALVEAPSCPQVRTLLARLTMLHTLPIPSRFFD-SMDALEVLDLSYNLDLNQLP-EEIGRLKNLHHLN 593 (885)
Q Consensus 516 ~~l~l~~~~i~~~~~~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~~-~l~~L~~L~Ls~~~~i~~lp-~~i~~L~~L~~L~ 593 (885)
+.++..++.+.. +|.. -.+.++.|++++|.+.. ++...|. .+++|++|+|++| .+..+| ..+.++++|++|+
T Consensus 21 ~~l~c~~~~l~~--iP~~-~~~~l~~L~Ls~N~l~~--l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~ 94 (361)
T 2xot_A 21 NILSCSKQQLPN--VPQS-LPSYTALLDLSHNNLSR--LRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLD 94 (361)
T ss_dssp TEEECCSSCCSS--CCSS-CCTTCSEEECCSSCCCE--ECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEE
T ss_pred CEEEeCCCCcCc--cCcc-CCCCCCEEECCCCCCCc--cChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEE
Confidence 457777777776 4431 23568899999999988 8877777 8999999999999 777776 5689999999999
Q ss_pred ccCCcccccChh-hhccccccEeecCCcccccccCCcccccCcccceecccccccccccCcccccccchhhhcCccCCcc
Q 045686 594 LSNTSIGCLPTA-IKRLIKLKVLLLDGIQCHLSIPEGVISSLSSLQVFSCFSTELVELIDPLFNETAILDELNCLEHLND 672 (885)
Q Consensus 594 Ls~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~ 672 (885)
|++|+|..+|.. +..+++|++|+|++|. +..++...+.++++|++|++++|.+.+. + ...+..+..+++|+.
T Consensus 95 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N~l~~l-~-----~~~~~~~~~l~~L~~ 167 (361)
T 2xot_A 95 LSSNHLHTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQISRF-P-----VELIKDGNKLPKLML 167 (361)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCSC-C-----GGGTC----CTTCCE
T ss_pred CCCCcCCcCCHHHhCCCcCCCEEECCCCc-ccEECHHHhCCcccCCEEECCCCcCCee-C-----HHHhcCcccCCcCCE
Confidence 999999888765 8899999999999997 6777655589999999999999988652 1 112222355667777
Q ss_pred eeEEEech
Q 045686 673 LSLTLFST 680 (885)
Q Consensus 673 L~l~~~~~ 680 (885)
|+++.+..
T Consensus 168 L~L~~N~l 175 (361)
T 2xot_A 168 LDLSSNKL 175 (361)
T ss_dssp EECCSSCC
T ss_pred EECCCCCC
Confidence 77665443
No 136
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.27 E-value=1.8e-12 Score=121.66 Aligned_cols=130 Identities=21% Similarity=0.264 Sum_probs=103.6
Q ss_pred CCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCchhhhcccccceeeccCCcccc-cChhhhcccccc
Q 045686 535 SCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPEEIGRLKNLHHLNLSNTSIGC-LPTAIKRLIKLK 613 (885)
Q Consensus 535 ~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~Ls~~~i~~-lp~~i~~L~~L~ 613 (885)
..++|+.|++++|.+....+|.. +..+++|++|++++| .++.+ ..++++++|++|++++|.+.. +|..+..+++|+
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~-~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGL-TDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT 91 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSC-CTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred CCccCeEEEccCCcCChhHHHHH-HhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence 34789999999999871127764 789999999999999 88877 778999999999999999987 888788899999
Q ss_pred EeecCCcccccccC--CcccccCcccceecccccccccccCcccccccchhhhcCccCCcceeE
Q 045686 614 VLLLDGIQCHLSIP--EGVISSLSSLQVFSCFSTELVELIDPLFNETAILDELNCLEHLNDLSL 675 (885)
Q Consensus 614 ~L~l~~~~~l~~lp--~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~L~l 675 (885)
+|++++|. +..+| .. ++.+++|++|++++|.+.+..+ .....+..+++|+.|++
T Consensus 92 ~L~ls~N~-i~~~~~~~~-~~~l~~L~~L~l~~N~l~~~~~------~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 92 HLNLSGNK-IKDLSTIEP-LKKLENLKSLDLFNCEVTNLND------YRENVFKLLPQLTYLDG 147 (149)
T ss_dssp EEECTTSC-CCSHHHHGG-GGGCTTCCEEECTTCGGGGSTT------HHHHHHHHCTTCCEETT
T ss_pred EEECCCCc-CCChHHHHH-HhhCCCCCEEeCcCCcccchHH------HHHHHHHHCCCcccccC
Confidence 99999997 67664 44 8999999999999998875210 00124555666666543
No 137
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.24 E-value=3.3e-12 Score=151.81 Aligned_cols=115 Identities=24% Similarity=0.275 Sum_probs=94.1
Q ss_pred cCCCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCchhhhcccccceeeccCCcccccChhhhcccc
Q 045686 532 EAPSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPEEIGRLKNLHHLNLSNTSIGCLPTAIKRLIK 611 (885)
Q Consensus 532 ~~~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~Ls~~~i~~lp~~i~~L~~ 611 (885)
.+..+++|++|+|++|.+.. +|..++ .+++|++|+|++| .++.+|..+++|++|++|+|++|.|..+|..+++|++
T Consensus 219 ~~~~l~~L~~L~Ls~n~l~~--l~~~~~-~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~ 294 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNLQIFN--ISANIF-KYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQ 294 (727)
T ss_dssp ---CCCCCCEEECTTSCCSC--CCGGGG-GCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTT
T ss_pred hhccCCCCcEEECCCCCCCC--CChhhc-CCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCC
Confidence 35667888888888888877 887744 7888888888888 7778888888888888888888888888888888888
Q ss_pred ccEeecCCcccccccCCcccccCcccceecccccccccccC
Q 045686 612 LKVLLLDGIQCHLSIPEGVISSLSSLQVFSCFSTELVELID 652 (885)
Q Consensus 612 L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~ 652 (885)
|++|+|++|. +..+|.. |++|++|++|++++|.+.+.++
T Consensus 295 L~~L~L~~N~-l~~lp~~-~~~l~~L~~L~L~~N~l~~~~p 333 (727)
T 4b8c_D 295 LKYFYFFDNM-VTTLPWE-FGNLCNLQFLGVEGNPLEKQFL 333 (727)
T ss_dssp CSEEECCSSC-CCCCCSS-TTSCTTCCCEECTTSCCCSHHH
T ss_pred CCEEECCCCC-CCccChh-hhcCCCccEEeCCCCccCCCCh
Confidence 8888888886 7788887 8888888888888888876443
No 138
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.23 E-value=1.1e-11 Score=120.12 Aligned_cols=127 Identities=25% Similarity=0.361 Sum_probs=106.4
Q ss_pred EEEecccCcccccccccCCCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCchh-hhcccccceeec
Q 045686 516 VRLSLWGSSIDFLALVEAPSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPEE-IGRLKNLHHLNL 594 (885)
Q Consensus 516 ~~l~l~~~~i~~~~~~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~-i~~L~~L~~L~L 594 (885)
+.+++.++.+.. ++. ...++|++|++++|.+.. ++...|..+++|++|++++| .++.+|.. ++++++|++|++
T Consensus 10 ~~l~~~~~~l~~--~p~-~~~~~l~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l 83 (177)
T 2o6r_A 10 TEIRCNSKGLTS--VPT-GIPSSATRLELESNKLQS--LPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYL 83 (177)
T ss_dssp TEEECCSSCCSS--CCT-TCCTTCSEEECCSSCCCC--CCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred CEEEecCCCCcc--CCC-CCCCCCcEEEeCCCcccE--eCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEEC
Confidence 456667777666 332 234789999999999887 88877899999999999999 78877765 689999999999
Q ss_pred cCCcccccChh-hhccccccEeecCCcccccccCCcccccCcccceeccccccccc
Q 045686 595 SNTSIGCLPTA-IKRLIKLKVLLLDGIQCHLSIPEGVISSLSSLQVFSCFSTELVE 649 (885)
Q Consensus 595 s~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~ 649 (885)
++|.+..+|.. +.++++|++|++++|. +..+|...+..+++|++|++++|.+.+
T Consensus 84 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 84 HENKLQSLPNGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCCccccCHHHhhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCCeec
Confidence 99999988876 6889999999999996 778888767889999999999998764
No 139
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.22 E-value=7.8e-12 Score=122.82 Aligned_cols=127 Identities=21% Similarity=0.227 Sum_probs=100.3
Q ss_pred EEEecccCcccccccccCCCCchhHHHHHhhcCCccCCCCc-hhhhcCCcccEEecCCCCCCCcC-chhhhcccccceee
Q 045686 516 VRLSLWGSSIDFLALVEAPSCPQVRTLLARLTMLHTLPIPS-RFFDSMDALEVLDLSYNLDLNQL-PEEIGRLKNLHHLN 593 (885)
Q Consensus 516 ~~l~l~~~~i~~~~~~~~~~~~~Lr~L~l~~~~l~~~~~~~-~~~~~l~~L~~L~Ls~~~~i~~l-p~~i~~L~~L~~L~ 593 (885)
+.++++++.++. +|.. -.++|++|++++|.+.. ++. .+|..+++|++|+|++| .++.+ |..++++++|++|+
T Consensus 11 ~~l~~s~~~l~~--ip~~-~~~~l~~L~l~~n~i~~--~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~ 84 (192)
T 1w8a_A 11 TTVDCTGRGLKE--IPRD-IPLHTTELLLNDNELGR--ISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQ 84 (192)
T ss_dssp TEEECTTSCCSS--CCSC-CCTTCSEEECCSCCCCS--BCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEE
T ss_pred CEEEcCCCCcCc--CccC-CCCCCCEEECCCCcCCc--cCCccccccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEE
Confidence 467778887766 4432 13488889999998877 665 35888999999999999 66665 77889999999999
Q ss_pred ccCCcccccChh-hhccccccEeecCCcccccccCCcccccCcccceeccccccccc
Q 045686 594 LSNTSIGCLPTA-IKRLIKLKVLLLDGIQCHLSIPEGVISSLSSLQVFSCFSTELVE 649 (885)
Q Consensus 594 Ls~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~ 649 (885)
|++|+|..+|.. +.++++|++|++++|. +..++...+..+++|++|++++|.+..
T Consensus 85 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 85 LGENKIKEISNKMFLGLHQLKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CCSCCCCEECSSSSTTCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CCCCcCCccCHHHhcCCCCCCEEECCCCc-CCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 999999887765 7889999999999997 555544448899999999999988764
No 140
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.21 E-value=1.6e-11 Score=120.61 Aligned_cols=125 Identities=22% Similarity=0.341 Sum_probs=97.2
Q ss_pred EEEecccCcccccccccCCCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCc-hhhhcccccceeec
Q 045686 516 VRLSLWGSSIDFLALVEAPSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLP-EEIGRLKNLHHLNL 594 (885)
Q Consensus 516 ~~l~l~~~~i~~~~~~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp-~~i~~L~~L~~L~L 594 (885)
+.++++++.+.. +|.. -.++|++|++++|.+.. +|. .|.++++|++|+|++| .++.++ ..+.++++|++|+|
T Consensus 13 ~~l~~~~~~l~~--ip~~-~~~~l~~L~L~~n~i~~--ip~-~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~L 85 (193)
T 2wfh_A 13 TVVRCSNKGLKV--LPKG-IPRDVTELYLDGNQFTL--VPK-ELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLIL 85 (193)
T ss_dssp TEEECTTSCCSS--CCSC-CCTTCCEEECCSSCCCS--CCG-GGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred CEEEcCCCCCCc--CCCC-CCCCCCEEECCCCcCch--hHH-HhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEEC
Confidence 356677777766 3332 23678888888888877 774 4788889999999888 676665 45888888999999
Q ss_pred cCCcccccChh-hhccccccEeecCCcccccccCCcccccCcccceecccccccc
Q 045686 595 SNTSIGCLPTA-IKRLIKLKVLLLDGIQCHLSIPEGVISSLSSLQVFSCFSTELV 648 (885)
Q Consensus 595 s~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 648 (885)
++|.|..+|.. +..+++|++|++++|. +..+|.+.+..+++|++|++++|.+.
T Consensus 86 s~N~l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 86 SYNRLRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCccCEeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCCee
Confidence 99888887764 8888899999998886 77888776888888999988888764
No 141
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.19 E-value=1.4e-11 Score=141.61 Aligned_cols=104 Identities=23% Similarity=0.278 Sum_probs=80.0
Q ss_pred hhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCchhhhcccccceeeccCCcccccChhhhccccccEeec
Q 045686 538 QVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPEEIGRLKNLHHLNLSNTSIGCLPTAIKRLIKLKVLLL 617 (885)
Q Consensus 538 ~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l 617 (885)
.|++|++++|.++. +|. |+.+++|++|+|++| .++.+|..+++|++|++|+|++|.|+.+| .++++++|++|++
T Consensus 442 ~L~~L~Ls~n~l~~--lp~--~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~L 515 (567)
T 1dce_A 442 DVRVLHLAHKDLTV--LCH--LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLL 515 (567)
T ss_dssp TCSEEECTTSCCSS--CCC--GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEEC
T ss_pred CceEEEecCCCCCC--CcC--ccccccCcEeecCcc-cccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEEC
Confidence 36667777777766 765 777888888888888 77788888888888888888888887777 7788888888888
Q ss_pred CCccccccc--CCcccccCcccceeccccccccc
Q 045686 618 DGIQCHLSI--PEGVISSLSSLQVFSCFSTELVE 649 (885)
Q Consensus 618 ~~~~~l~~l--p~~~i~~L~~L~~L~l~~~~~~~ 649 (885)
++|. +..+ |.. +++|++|++|++++|.+.+
T Consensus 516 s~N~-l~~~~~p~~-l~~l~~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 516 CNNR-LQQSAAIQP-LVSCPRLVLLNLQGNSLCQ 547 (567)
T ss_dssp CSSC-CCSSSTTGG-GGGCTTCCEEECTTSGGGG
T ss_pred CCCC-CCCCCCcHH-HhcCCCCCEEEecCCcCCC
Confidence 8886 5555 555 7788888888888887765
No 142
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.17 E-value=2.4e-11 Score=119.31 Aligned_cols=103 Identities=22% Similarity=0.328 Sum_probs=90.6
Q ss_pred HHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCchhhhcccccceeeccCCcccccChh-hhccccccEeecC
Q 045686 540 RTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPEEIGRLKNLHHLNLSNTSIGCLPTA-IKRLIKLKVLLLD 618 (885)
Q Consensus 540 r~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~Ls~~~i~~lp~~-i~~L~~L~~L~l~ 618 (885)
++++++++.++. +|..+ .+.|++|+|++| .++.+|..+.++++|++|+|++|.|..++.. |.++++|++|+++
T Consensus 13 ~~l~~~~~~l~~--ip~~~---~~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls 86 (193)
T 2wfh_A 13 TVVRCSNKGLKV--LPKGI---PRDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS 86 (193)
T ss_dssp TEEECTTSCCSS--CCSCC---CTTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCCCc--CCCCC---CCCCCEEECCCC-cCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECC
Confidence 456778888888 88764 368999999999 8999999999999999999999999888764 8999999999999
Q ss_pred CcccccccCCcccccCcccceeccccccccc
Q 045686 619 GIQCHLSIPEGVISSLSSLQVFSCFSTELVE 649 (885)
Q Consensus 619 ~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~ 649 (885)
+|. +..++...+..+++|++|++++|.+..
T Consensus 87 ~N~-l~~i~~~~f~~l~~L~~L~L~~N~l~~ 116 (193)
T 2wfh_A 87 YNR-LRCIPPRTFDGLKSLRLLSLHGNDISV 116 (193)
T ss_dssp SSC-CCBCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred CCc-cCEeCHHHhCCCCCCCEEECCCCCCCe
Confidence 997 788887669999999999999998864
No 143
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.15 E-value=2e-11 Score=119.86 Aligned_cols=104 Identities=20% Similarity=0.277 Sum_probs=89.5
Q ss_pred HHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCchh--hhcccccceeeccCCccccc-ChhhhccccccEee
Q 045686 540 RTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPEE--IGRLKNLHHLNLSNTSIGCL-PTAIKRLIKLKVLL 616 (885)
Q Consensus 540 r~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~--i~~L~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~ 616 (885)
++++++++.++. +|..++ ..|++|++++| .++.+|.. ++.+++|++|+|++|.|..+ |..+.++++|++|+
T Consensus 11 ~~l~~s~~~l~~--ip~~~~---~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 84 (192)
T 1w8a_A 11 TTVDCTGRGLKE--IPRDIP---LHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQ 84 (192)
T ss_dssp TEEECTTSCCSS--CCSCCC---TTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CEEEcCCCCcCc--CccCCC---CCCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEE
Confidence 667888898888 887643 38999999999 88888764 89999999999999999877 66799999999999
Q ss_pred cCCcccccccCCcccccCcccceecccccccccc
Q 045686 617 LDGIQCHLSIPEGVISSLSSLQVFSCFSTELVEL 650 (885)
Q Consensus 617 l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~ 650 (885)
+++|. +..++...+.++++|++|++++|.+.+.
T Consensus 85 Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 117 (192)
T 1w8a_A 85 LGENK-IKEISNKMFLGLHQLKTLNLYDNQISCV 117 (192)
T ss_dssp CCSCC-CCEECSSSSTTCTTCCEEECCSSCCCEE
T ss_pred CCCCc-CCccCHHHhcCCCCCCEEECCCCcCCee
Confidence 99997 7777766689999999999999998753
No 144
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.15 E-value=5.9e-10 Score=114.15 Aligned_cols=197 Identities=14% Similarity=0.143 Sum_probs=113.5
Q ss_pred CCccchhHHHHHHHHHhhcCC-CeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHHHcC
Q 045686 152 GKTVGLDSIISEVWRCIEDHN-EKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILRRFE 230 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~~~-~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~ 230 (885)
.+++||+..++.+..++.... ...+.|+|++|+||||+|+.+++..... ..+.. ..+..... ...+.....
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~-~~~~~---~~~~~~~~----~~~~~~~~~ 94 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE-TGITA---TPCGVCDN----CREIEQGRF 94 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCT-TCSCS---SCCSCSHH----HHHHHTTCC
T ss_pred HHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCC-CCCCC---CCCcccHH----HHHHhccCC
Confidence 468999999999999997643 4588999999999999999999876421 11100 00000000 001110000
Q ss_pred CCcccc--CCCChhHHHHHHHHHh-----cCCCeEEEEecCCCcc--ccccccccccccccCCCCCEEEEEcCChhH-Hh
Q 045686 231 IPDQMW--IGKDEDGRANEILSNL-----RGKKFVLLLDDVWERL--DLSKVGVSDLLDDSSQTGSKIVFTTRSEEV-CG 300 (885)
Q Consensus 231 ~~~~~~--~~~~~~~~~~~l~~~l-----~~k~~LlVLDdv~~~~--~~~~~~~~~~l~~~~~~gs~IivTTR~~~v-~~ 300 (885)
...... ...........+.+.+ .+++.+||+||++... .+..+...+. ....+..+|+||+.... ..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~---~~~~~~~~i~~t~~~~~~~~ 171 (250)
T 1njg_A 95 VDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLE---EPPEHVKFLLATTDPQKLPV 171 (250)
T ss_dssp SSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHH---SCCTTEEEEEEESCGGGSCH
T ss_pred cceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHh---cCCCceEEEEEeCChHhCCH
Confidence 000000 0001111122222222 3467999999997532 1222211111 23446788888876532 11
Q ss_pred h-hcccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCchhHHHHHHHHH
Q 045686 301 E-MGARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPLALVTIGHAM 362 (885)
Q Consensus 301 ~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~l 362 (885)
. ......+.+.+++.++..+++.+.+.......+ .+..+.|++.|+|.|..+..+...+
T Consensus 172 ~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 172 TILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE---PRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp HHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCBC---HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 1 122357899999999999999988753322222 3457899999999999988776544
No 145
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.11 E-value=5.6e-13 Score=131.90 Aligned_cols=109 Identities=19% Similarity=0.275 Sum_probs=60.3
Q ss_pred CCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCchhhhcccccceeeccCCcccccChhhhcccccc
Q 045686 534 PSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPEEIGRLKNLHHLNLSNTSIGCLPTAIKRLIKLK 613 (885)
Q Consensus 534 ~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~ 613 (885)
..+++|++|++++|.+.. +| .+..+++|++|++++| .++.+|..++.+++|++|++++|++..+| .+..+++|+
T Consensus 45 ~~l~~L~~L~ls~n~l~~--l~--~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~ 118 (198)
T 1ds9_A 45 STLKACKHLALSTNNIEK--IS--SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLR 118 (198)
T ss_dssp HHTTTCSEEECSEEEESC--CC--CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSS
T ss_pred hcCCCCCEEECCCCCCcc--cc--ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCC
Confidence 344555555666555555 54 2555566666666665 55555555555556666666666555555 455556666
Q ss_pred EeecCCcccccccCC-cccccCcccceeccccccccc
Q 045686 614 VLLLDGIQCHLSIPE-GVISSLSSLQVFSCFSTELVE 649 (885)
Q Consensus 614 ~L~l~~~~~l~~lp~-~~i~~L~~L~~L~l~~~~~~~ 649 (885)
+|++++|. +..+|. ..+..+++|++|++++|.+.+
T Consensus 119 ~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 119 VLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp EEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred EEECCCCc-CCchhHHHHHhcCCCCCEEEecCCcccc
Confidence 66666554 444332 125555566666666555543
No 146
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.10 E-value=8.8e-10 Score=111.08 Aligned_cols=186 Identities=12% Similarity=0.056 Sum_probs=113.2
Q ss_pred CCccchhHHHHHHHHHhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHHHcCC
Q 045686 152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILRRFEI 231 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~ 231 (885)
.+++|+++.++.+.+++.....+.+.|+|++|+|||++|+.+++..... ..-...+.+..+.......+...+......
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGE-NWRDNFIEMNASDERGIDVVRHKIKEFART 95 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGG-GGGGGEEEEETTCTTCHHHHHHHHHHHHTS
T ss_pred HHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhcc-ccccceEEeccccccChHHHHHHHHHHhcc
Confidence 4689999999999999987665569999999999999999999875321 111123333333332322222111111110
Q ss_pred CccccCCCChhHHHHHHHHHhcCCCeEEEEecCCCccc--cccccccccccccCCCCCEEEEEcCChhH-Hhh-hcccce
Q 045686 232 PDQMWIGKDEDGRANEILSNLRGKKFVLLLDDVWERLD--LSKVGVSDLLDDSSQTGSKIVFTTRSEEV-CGE-MGARRR 307 (885)
Q Consensus 232 ~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~--~~~~~~~~~l~~~~~~gs~IivTTR~~~v-~~~-~~~~~~ 307 (885)
.. .-.+++.+||+||++.... ...+...+. ....+..+|+||+.... ... ......
T Consensus 96 ~~-----------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~---~~~~~~~~i~~~~~~~~~~~~l~~r~~~ 155 (226)
T 2chg_A 96 AP-----------------IGGAPFKIIFLDEADALTADAQAALRRTME---MYSKSCRFILSCNYVSRIIEPIQSRCAV 155 (226)
T ss_dssp CC-----------------STTCSCEEEEEETGGGSCHHHHHHHHHHHH---HTTTTEEEEEEESCGGGSCHHHHTTSEE
T ss_pred cC-----------------CCccCceEEEEeChhhcCHHHHHHHHHHHH---hcCCCCeEEEEeCChhhcCHHHHHhCce
Confidence 00 0125688999999976421 112211111 23456788888876532 111 112247
Q ss_pred eeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCchhHHHHHHHH
Q 045686 308 FRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPLALVTIGHA 361 (885)
Q Consensus 308 ~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~ 361 (885)
+.+.+++.++..+++.+.+.......+ .+..+.|++.++|.|..+..+...
T Consensus 156 i~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~g~~r~l~~~l~~ 206 (226)
T 2chg_A 156 FRFKPVPKEAMKKRLLEICEKEGVKIT---EDGLEALIYISGGDFRKAINALQG 206 (226)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHTCCBC---HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred eecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 899999999999999987743222222 345778999999999966544433
No 147
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.06 E-value=2.4e-10 Score=122.75 Aligned_cols=283 Identities=13% Similarity=0.110 Sum_probs=147.8
Q ss_pred CchhHHHHHhhcCCccCCCCchhhhc-CCcccEEecCCCCCCCcCchhhhcccccceeeccCCcccccChh-hhc-----
Q 045686 536 CPQVRTLLARLTMLHTLPIPSRFFDS-MDALEVLDLSYNLDLNQLPEEIGRLKNLHHLNLSNTSIGCLPTA-IKR----- 608 (885)
Q Consensus 536 ~~~Lr~L~l~~~~l~~~~~~~~~~~~-l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~Ls~~~i~~lp~~-i~~----- 608 (885)
+++++.|.++++ +.. ..-..+.. +++|++|||++| .+......-+.++.++++.+..+ .+|.. |.+
T Consensus 24 ~~~l~~L~l~g~-i~~--~~~~~l~~~l~~L~~LdLs~n-~i~~~~~~~~~~~~~~~~~~~~~---~I~~~aF~~~~~~~ 96 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNA--EDFRHLRDEFPSLKVLDISNA-EIKMYSGKAGTYPNGKFYIYMAN---FVPAYAFSNVVNGV 96 (329)
T ss_dssp HHHCSEEEEEEE-ECH--HHHHHHHHSCTTCCEEEEEEE-EECCEEESSSSSGGGCCEEECTT---EECTTTTEEEETTE
T ss_pred hCceeEEEEecc-ccH--HHHHHHHHhhccCeEEecCcc-eeEEecCcccccccccccccccc---ccCHHHhccccccc
Confidence 455666666665 111 11112344 788999999999 66621111122233444444444 33333 455
Q ss_pred ---cccccEeecCCcccccccCCcccccCcccceecccccccccccCcccccccchhhhcCccCCcceeEEEechhhHHh
Q 045686 609 ---LIKLKVLLLDGIQCHLSIPEGVISSLSSLQVFSCFSTELVELIDPLFNETAILDELNCLEHLNDLSLTLFSTEAVDK 685 (885)
Q Consensus 609 ---L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~~~~ 685 (885)
|++|+.|++.+ . +..++.+.|.+|++|+.|++..|.+....+..| ..+.++..+... .......
T Consensus 97 ~~g~~~L~~l~L~~-~-i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF---------~~~~~l~~l~~~--~~~~~~~ 163 (329)
T 3sb4_A 97 TKGKQTLEKVILSE-K-IKNIEDAAFKGCDNLKICQIRKKTAPNLLPEAL---------ADSVTAIFIPLG--SSDAYRF 163 (329)
T ss_dssp EEECTTCCC-CBCT-T-CCEECTTTTTTCTTCCEEEBCCSSCCEECTTSS---------CTTTCEEEECTT--CTHHHHT
T ss_pred ccccCCCcEEECCc-c-ccchhHHHhhcCcccceEEcCCCCccccchhhh---------cCCCceEEecCc--chhhhhc
Confidence 77777777776 2 666777667777777777777665543211111 111111111110 0000000
Q ss_pred hhCCC----cccccce-eEEeccccccccchhh---hhhccceEEeeccCccceeecCCCCCccccccccEEeeccccCC
Q 045686 686 LLNSP----KLQRCIR-RLTIESSELLSLELGL---MLSHLEILRIKCGFMKRLNIDQGLNNRPSFSALRRLSIILCPDI 757 (885)
Q Consensus 686 l~~~~----~~~~~L~-~L~l~~~~~~~~~l~~---~~~~L~~L~l~~~~l~~l~~~~~~~~~~~l~~L~~L~L~~c~~l 757 (885)
..... ..+..|+ .+.+.......-.+.. ...++..+.+... +........ ...+++|+.|+|.+| .+
T Consensus 164 ~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~-l~~~~~~~l---~~~~~~L~~l~L~~n-~i 238 (329)
T 3sb4_A 164 KNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGK-LDNADFKLI---RDYMPNLVSLDISKT-NA 238 (329)
T ss_dssp STTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEEC-CCHHHHHHH---HHHCTTCCEEECTTB-CC
T ss_pred cccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeee-ecHHHHHHH---HHhcCCCeEEECCCC-Cc
Confidence 00000 0001111 1222111100000000 0144455554221 111000000 012578888888877 57
Q ss_pred cccc--ccccCCCccEEeEeccCCchhhhcccccCCCcccccccccc-eecccccccccccc-CCccCCCCccEEeeccC
Q 045686 758 QNLT--CLVHVPSLQFLSLSNCHSLEEIVGTYASGSSESRNYFSNLM-AVDLDGLPTLRSIC-SGTVAFPSLQTLSITGC 833 (885)
Q Consensus 758 ~~l~--~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~L~-~L~l~~~~~l~~~~-~~~~~~p~L~~L~i~~C 833 (885)
+.++ .+..+++|+.|+|.++ ++.++. ..+.++++|+ .+.+.+ .+..+. ..+..|++|+.|++.+
T Consensus 239 ~~I~~~aF~~~~~L~~l~l~~n--i~~I~~-------~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~- 306 (329)
T 3sb4_A 239 TTIPDFTFAQKKYLLKIKLPHN--LKTIGQ-------RVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATG- 306 (329)
T ss_dssp CEECTTTTTTCTTCCEEECCTT--CCEECT-------TTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECS-
T ss_pred ceecHhhhhCCCCCCEEECCcc--cceehH-------HHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCC-
Confidence 7765 5678888888888876 666644 5677888888 888876 566664 4567788999999877
Q ss_pred CCCCCcCCCCccccCCceEEEc
Q 045686 834 PSLKKLPFNSESARRSLISVRA 855 (885)
Q Consensus 834 ~~L~~lp~~~~~~~~~l~~i~~ 855 (885)
++++.++...+..+.+|+.|+.
T Consensus 307 n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 307 DKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp SCCCEECTTTTCTTCCCCEEEC
T ss_pred CccCccchhhhcCCcchhhhcc
Confidence 6888898888888888887763
No 148
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.05 E-value=1.4e-10 Score=111.23 Aligned_cols=104 Identities=28% Similarity=0.365 Sum_probs=84.9
Q ss_pred hHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcC-chhhhcccccceeeccCCcccccChh-hhccccccEee
Q 045686 539 VRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQL-PEEIGRLKNLHHLNLSNTSIGCLPTA-IKRLIKLKVLL 616 (885)
Q Consensus 539 Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~l-p~~i~~L~~L~~L~Ls~~~i~~lp~~-i~~L~~L~~L~ 616 (885)
.+++++++|.++. +|..+ .+.|++|+|++| .++.+ |..++++++|++|+|++|+|..+|.. +.++++|++|+
T Consensus 11 ~~~l~~s~n~l~~--ip~~~---~~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~ 84 (170)
T 3g39_A 11 GTTVDCSGKSLAS--VPTGI---PTTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLS 84 (170)
T ss_dssp TTEEECTTSCCSS--CCSCC---CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCEEEeCCCCcCc--cCccC---CCCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEE
Confidence 3556777777777 77654 378899999999 77766 66788899999999999999888876 57899999999
Q ss_pred cCCcccccccCCcccccCcccceeccccccccc
Q 045686 617 LDGIQCHLSIPEGVISSLSSLQVFSCFSTELVE 649 (885)
Q Consensus 617 l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~ 649 (885)
+++|. +..+|.+.+.++++|++|++++|.+..
T Consensus 85 L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 85 LNDNQ-LKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp CCSSC-CCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CCCCc-cCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 99996 778887768899999999999987753
No 149
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.05 E-value=8.3e-10 Score=118.53 Aligned_cols=286 Identities=13% Similarity=0.026 Sum_probs=176.7
Q ss_pred ccceEEEecccCcccccccccCCC-CchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCchhhhc-----
Q 045686 512 WHEAVRLSLWGSSIDFLALVEAPS-CPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPEEIGR----- 585 (885)
Q Consensus 512 ~~~~~~l~l~~~~i~~~~~~~~~~-~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~----- 585 (885)
+.+++.|.+.++ +....+..+.. +++|++|+|++|.+.....+...+ +.++++.+..+ .+. +..+.+
T Consensus 24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~---~~~~~~~~~~~-~I~--~~aF~~~~~~~ 96 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTY---PNGKFYIYMAN-FVP--AYAFSNVVNGV 96 (329)
T ss_dssp HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSS---GGGCCEEECTT-EEC--TTTTEEEETTE
T ss_pred hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCccccc---ccccccccccc-ccC--HHHhccccccc
Confidence 457888888754 22111222223 788999999999887211333222 33566666655 222 234566
Q ss_pred ---ccccceeeccCCcccccChh-hhccccccEeecCCcccccccCCcccccCcccceecccccccccccCcccccccch
Q 045686 586 ---LKNLHHLNLSNTSIGCLPTA-IKRLIKLKVLLLDGIQCHLSIPEGVISSLSSLQVFSCFSTELVELIDPLFNETAIL 661 (885)
Q Consensus 586 ---L~~L~~L~Ls~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l 661 (885)
|.+|+.|+|.. .+..++.. |.+|++|+.|++++|. +..++...|..+.++..+........... ..-.-
T Consensus 97 ~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~-i~~i~~~aF~~~~~l~~l~~~~~~~~~~~-----~~i~~ 169 (329)
T 3sb4_A 97 TKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKT-APNLLPEALADSVTAIFIPLGSSDAYRFK-----NRWEH 169 (329)
T ss_dssp EEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSS-CCEECTTSSCTTTCEEEECTTCTHHHHTS-----TTTTT
T ss_pred ccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCC-ccccchhhhcCCCceEEecCcchhhhhcc-----ccccc
Confidence 99999999999 88888876 8899999999999986 67888888888888887776553211000 00000
Q ss_pred hhhcCccCCc-ceeEEEechhhHHh-hhCCCcccccceeEEeccccc-ccc-chhhhhhccceEEeeccCccceeecCCC
Q 045686 662 DELNCLEHLN-DLSLTLFSTEAVDK-LLNSPKLQRCIRRLTIESSEL-LSL-ELGLMLSHLEILRIKCGFMKRLNIDQGL 737 (885)
Q Consensus 662 ~~l~~L~~L~-~L~l~~~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~-~~~-~l~~~~~~L~~L~l~~~~l~~l~~~~~~ 737 (885)
..+..+..|+ .+.+. ....++. +....-...++..+.+.+.-. ... .+...+++|+.|+++.+.++.++...+.
T Consensus 170 ~~f~~~~~L~~~i~~~--~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~ 247 (329)
T 3sb4_A 170 FAFIEGEPLETTIQVG--AMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFA 247 (329)
T ss_dssp SCEEESCCCEEEEEEC--TTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTT
T ss_pred cccccccccceeEEec--CCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhh
Confidence 0111222332 11111 1111111 111111123556666654421 111 1223358999999988889988876654
Q ss_pred CCccccccccEEeeccccCCcccc--ccccCCCcc-EEeEeccCCchhhhcccccCCCcccccccccceecccccccccc
Q 045686 738 NNRPSFSALRRLSIILCPDIQNLT--CLVHVPSLQ-FLSLSNCHSLEEIVGTYASGSSESRNYFSNLMAVDLDGLPTLRS 814 (885)
Q Consensus 738 ~~~~~l~~L~~L~L~~c~~l~~l~--~l~~l~~L~-~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 814 (885)
.+++|+.|++.++ ++.++ .+..+++|+ .|.+.+ .++.+.. ..+.++++|+.|++.+ ..+..
T Consensus 248 ----~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~-------~aF~~c~~L~~l~l~~-n~i~~ 311 (329)
T 3sb4_A 248 ----QKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEF-------GAFMGCDNLRYVLATG-DKITT 311 (329)
T ss_dssp ----TCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECT-------TTTTTCTTEEEEEECS-SCCCE
T ss_pred ----CCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEch-------hhhhCCccCCEEEeCC-CccCc
Confidence 4889999999886 77664 578899999 999987 5666644 5788999999999976 35666
Q ss_pred ccC-CccCCCCccEEe
Q 045686 815 ICS-GTVAFPSLQTLS 829 (885)
Q Consensus 815 ~~~-~~~~~p~L~~L~ 829 (885)
+.. .+..+++|+.+.
T Consensus 312 I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 312 LGDELFGNGVPSKLIY 327 (329)
T ss_dssp ECTTTTCTTCCCCEEE
T ss_pred cchhhhcCCcchhhhc
Confidence 654 455667777664
No 150
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.04 E-value=1.4e-10 Score=111.68 Aligned_cols=102 Identities=24% Similarity=0.351 Sum_probs=79.8
Q ss_pred HHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcC-chhhhcccccceeeccCCcccccChh-hhccccccEeec
Q 045686 540 RTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQL-PEEIGRLKNLHHLNLSNTSIGCLPTA-IKRLIKLKVLLL 617 (885)
Q Consensus 540 r~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~l-p~~i~~L~~L~~L~Ls~~~i~~lp~~-i~~L~~L~~L~l 617 (885)
+.+++++|.+.. +|..+ .+.|++|+|++| .+..+ |..++++++|++|+|++|+|..+|.. +.++++|++|++
T Consensus 15 ~~l~~~~n~l~~--iP~~~---~~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L 88 (174)
T 2r9u_A 15 TLVNCQNIRLAS--VPAGI---PTDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDL 88 (174)
T ss_dssp SEEECCSSCCSS--CCSCC---CTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cEEEeCCCCCCc--cCCCc---CCCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEEC
Confidence 445666666766 77653 278888888888 66666 56788888888888888888888876 578888888888
Q ss_pred CCcccccccCCcccccCcccceecccccccc
Q 045686 618 DGIQCHLSIPEGVISSLSSLQVFSCFSTELV 648 (885)
Q Consensus 618 ~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 648 (885)
++|. +..+|.+.+.++++|++|++++|.+.
T Consensus 89 ~~N~-l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 89 NDNH-LKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CSSC-CCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CCCc-cceeCHHHhccccCCCEEEeCCCCcc
Confidence 8886 77788766888888888888888765
No 151
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.98 E-value=2.4e-11 Score=120.00 Aligned_cols=109 Identities=24% Similarity=0.305 Sum_probs=88.2
Q ss_pred hhhcCCcccEEecCCCCCCCcCchhhhcccccceeeccCCcccccChhhhccccccEeecCCcccccccCCcccccCccc
Q 045686 558 FFDSMDALEVLDLSYNLDLNQLPEEIGRLKNLHHLNLSNTSIGCLPTAIKRLIKLKVLLLDGIQCHLSIPEGVISSLSSL 637 (885)
Q Consensus 558 ~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L 637 (885)
.|..+++|++|+|++| .++.+| .++++++|++|++++|.+..+|..+..+++|++|++++|. +..+| . ++++++|
T Consensus 43 ~~~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~-l~~l~-~-~~~l~~L 117 (198)
T 1ds9_A 43 TLSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ-IASLS-G-IEKLVNL 117 (198)
T ss_dssp HHHHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEE-CCCHH-H-HHHHHHS
T ss_pred HHhcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCc-CCcCC-c-cccCCCC
Confidence 3788999999999999 788888 8899999999999999999999888888999999999996 77777 3 8899999
Q ss_pred ceecccccccccccCcccccccchhhhcCccCCcceeEEEec
Q 045686 638 QVFSCFSTELVELIDPLFNETAILDELNCLEHLNDLSLTLFS 679 (885)
Q Consensus 638 ~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~L~l~~~~ 679 (885)
++|++++|.+.+. ..+..+..+++|+.|++..+.
T Consensus 118 ~~L~l~~N~i~~~--------~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 118 RVLYMSNNKITNW--------GEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp SEEEESEEECCCH--------HHHHHHTTTTTCSEEEECSCH
T ss_pred CEEECCCCcCCch--------hHHHHHhcCCCCCEEEecCCc
Confidence 9999999887531 122456666666666665443
No 152
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.97 E-value=3.9e-10 Score=109.08 Aligned_cols=109 Identities=24% Similarity=0.350 Sum_probs=95.6
Q ss_pred ccceEEEecccCcccccccccCCCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCchh-hhcccccc
Q 045686 512 WHEAVRLSLWGSSIDFLALVEAPSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPEE-IGRLKNLH 590 (885)
Q Consensus 512 ~~~~~~l~l~~~~i~~~~~~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~-i~~L~~L~ 590 (885)
.++++.|++.+|.+.......+..+++|++|++++|.+.. ++...|..+++|++|+|++| .++.+|.. ++++++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~ 103 (177)
T 2o6r_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQS--LPDGVFDKLTKLTILYLHEN-KLQSLPNGVFDKLTQLK 103 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC--CCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCC
T ss_pred CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceE--eChhHccCCCccCEEECCCC-CccccCHHHhhCCcccC
Confidence 3689999999999887433346789999999999999988 88888899999999999999 78887765 68999999
Q ss_pred eeeccCCcccccChh-hhccccccEeecCCcccc
Q 045686 591 HLNLSNTSIGCLPTA-IKRLIKLKVLLLDGIQCH 623 (885)
Q Consensus 591 ~L~Ls~~~i~~lp~~-i~~L~~L~~L~l~~~~~l 623 (885)
+|++++|.+..+|.. +..+++|++|++++|...
T Consensus 104 ~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 104 ELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred EEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 999999999999987 578999999999999743
No 153
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.96 E-value=3.3e-10 Score=109.00 Aligned_cols=106 Identities=15% Similarity=0.208 Sum_probs=89.9
Q ss_pred EEEecccCcccccccccCCCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCchh-hhcccccceeec
Q 045686 516 VRLSLWGSSIDFLALVEAPSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPEE-IGRLKNLHHLNL 594 (885)
Q Consensus 516 ~~l~l~~~~i~~~~~~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~-i~~L~~L~~L~L 594 (885)
+.++++++.+.. +|... .++|++|++++|.+.. +++..|.++++|++|+|++| .++.+|.. ++++++|++|+|
T Consensus 15 ~~l~~~~n~l~~--iP~~~-~~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L 88 (174)
T 2r9u_A 15 TLVNCQNIRLAS--VPAGI-PTDKQRLWLNNNQITK--LEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDL 88 (174)
T ss_dssp SEEECCSSCCSS--CCSCC-CTTCSEEECCSSCCCC--CCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred cEEEeCCCCCCc--cCCCc-CCCCcEEEeCCCCccc--cCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEEC
Confidence 467788888776 44322 3899999999999988 87777999999999999999 88888876 589999999999
Q ss_pred cCCcccccChh-hhccccccEeecCCcccccccCC
Q 045686 595 SNTSIGCLPTA-IKRLIKLKVLLLDGIQCHLSIPE 628 (885)
Q Consensus 595 s~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~ 628 (885)
++|+|..+|.. +..+++|++|++++|. +...+.
T Consensus 89 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~-~~c~~~ 122 (174)
T 2r9u_A 89 NDNHLKSIPRGAFDNLKSLTHIYLYNNP-WDCECR 122 (174)
T ss_dssp CSSCCCCCCTTTTTTCTTCSEEECCSSC-BCTTBG
T ss_pred CCCccceeCHHHhccccCCCEEEeCCCC-cccccc
Confidence 99999999987 8999999999999997 444443
No 154
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.91 E-value=5.6e-09 Score=111.77 Aligned_cols=185 Identities=16% Similarity=0.181 Sum_probs=111.7
Q ss_pred CCccchhHHHHHHHHHhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHHHcCC
Q 045686 152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILRRFEI 231 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~ 231 (885)
.+++|++..++.+.+++..+..+.+.|+|++|+||||+|+.+++..... ......+++..+.......+ .+++..+..
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~ 98 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGR-SYADGVLELNASDDRGIDVV-RNQIKHFAQ 98 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGG-GHHHHEEEECTTSCCSHHHH-HTHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCC-cccCCEEEecCccccChHHH-HHHHHHHHh
Confidence 5689999999999999987665559999999999999999999876311 11112333333332222211 111111100
Q ss_pred CccccCCCChhHHHHHHHHHh-cCCCeEEEEecCCCccc--cccccccccccccCCCCCEEEEEcCChh-HHhh-hcccc
Q 045686 232 PDQMWIGKDEDGRANEILSNL-RGKKFVLLLDDVWERLD--LSKVGVSDLLDDSSQTGSKIVFTTRSEE-VCGE-MGARR 306 (885)
Q Consensus 232 ~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVLDdv~~~~~--~~~~~~~~~l~~~~~~gs~IivTTR~~~-v~~~-~~~~~ 306 (885)
. ...+ .+++.++|+||++.... ...+...+. ....++.+|+||+... +... .....
T Consensus 99 ~----------------~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le---~~~~~~~~il~~~~~~~l~~~l~sr~~ 159 (323)
T 1sxj_B 99 K----------------KLHLPPGKHKIVILDEADSMTAGAQQALRRTME---LYSNSTRFAFACNQSNKIIEPLQSQCA 159 (323)
T ss_dssp B----------------CCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHH---HTTTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred c----------------cccCCCCCceEEEEECcccCCHHHHHHHHHHHh---ccCCCceEEEEeCChhhchhHHHhhce
Confidence 0 0011 34688999999976421 222211111 2345678888886643 1111 12234
Q ss_pred eeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCchhH-HHHHHH
Q 045686 307 RFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPLA-LVTIGH 360 (885)
Q Consensus 307 ~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLa-i~~~~~ 360 (885)
.+.+.+++.++..+++...+.......+ .+....|++.|+|.|.. +..+..
T Consensus 160 ~i~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 160 ILRYSKLSDEDVLKRLLQIIKLEDVKYT---NDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHTCCBC---HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred EEeecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 7899999999999999987743222222 24578899999999954 444443
No 155
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.88 E-value=1.3e-09 Score=104.30 Aligned_cols=101 Identities=21% Similarity=0.312 Sum_probs=87.4
Q ss_pred eEEEecccCcccccccccCCCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCchh-hhcccccceee
Q 045686 515 AVRLSLWGSSIDFLALVEAPSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPEE-IGRLKNLHHLN 593 (885)
Q Consensus 515 ~~~l~l~~~~i~~~~~~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~-i~~L~~L~~L~ 593 (885)
.+.+++++|.++. ++... .++|++|++++|.++. +++..|.++++|++|+|++| .++.+|.. +.++++|++|+
T Consensus 11 ~~~l~~s~n~l~~--ip~~~-~~~l~~L~L~~N~i~~--~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~ 84 (170)
T 3g39_A 11 GTTVDCSGKSLAS--VPTGI-PTTTQVLYLYDNQITK--LEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLS 84 (170)
T ss_dssp TTEEECTTSCCSS--CCSCC-CTTCSEEECCSSCCCC--CCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred CCEEEeCCCCcCc--cCccC-CCCCcEEEcCCCcCCc--cChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEE
Confidence 3568888888877 44322 4889999999999988 87777999999999999999 88888775 58999999999
Q ss_pred ccCCcccccChh-hhccccccEeecCCcc
Q 045686 594 LSNTSIGCLPTA-IKRLIKLKVLLLDGIQ 621 (885)
Q Consensus 594 Ls~~~i~~lp~~-i~~L~~L~~L~l~~~~ 621 (885)
|++|+|..+|.. +.++++|++|++++|.
T Consensus 85 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 85 LNDNQLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 999999999886 8899999999999997
No 156
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.86 E-value=1.9e-08 Score=110.43 Aligned_cols=104 Identities=19% Similarity=0.153 Sum_probs=64.8
Q ss_pred cCCCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcC-chhhhcccccceeeccCCcccccChhhhccc
Q 045686 532 EAPSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQL-PEEIGRLKNLHHLNLSNTSIGCLPTAIKRLI 610 (885)
Q Consensus 532 ~~~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~l-p~~i~~L~~L~~L~Ls~~~i~~lp~~i~~L~ 610 (885)
.+.+| +|+.+.+..+ ++. ++...|.++ .|+.+.+.++ ++.+ +..+.+|.+|+.+++++|++..+|...-.+.
T Consensus 131 aF~~~-~L~~i~l~~~-i~~--I~~~aF~~~-~L~~i~lp~~--l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~ 203 (401)
T 4fdw_A 131 AFRNS-QIAKVVLNEG-LKS--IGDMAFFNS-TVQEIVFPST--LEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYA 203 (401)
T ss_dssp TTTTC-CCSEEECCTT-CCE--ECTTTTTTC-CCCEEECCTT--CCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTC
T ss_pred hcccC-CccEEEeCCC-ccE--ECHHhcCCC-CceEEEeCCC--ccEehHHHhhCcccCCeeecCCCcceEechhhEeec
Confidence 34444 4666665544 555 666666664 5777777653 4443 3456667777777777777777776644456
Q ss_pred cccEeecCCcccccccCCcccccCcccceecccc
Q 045686 611 KLKVLLLDGIQCHLSIPEGVISSLSSLQVFSCFS 644 (885)
Q Consensus 611 ~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~ 644 (885)
+|+.+.+..+ +..++...|.++++|+.+.+..
T Consensus 204 ~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 204 GIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp CCSEEECCTT--CCEECTTTTTTCTTCCCEECCT
T ss_pred ccCEEEeCCc--hheehhhHhhCCCCCCEEecCC
Confidence 7777777654 6666666677777777776654
No 157
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.82 E-value=5.1e-08 Score=101.70 Aligned_cols=168 Identities=11% Similarity=0.071 Sum_probs=104.4
Q ss_pred ccchhHHHHHHHHHhh----cCCCeEEEEEcCCCCcHHHHHHHHHhhhccCCC-----CccEEEEEEEcCcccHHHHHHH
Q 045686 154 TVGLDSIISEVWRCIE----DHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGH-----DFDLVIWVKVSRDANLEKIQES 224 (885)
Q Consensus 154 ~vgr~~~~~~l~~~L~----~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~-----~f~~~~wv~v~~~~~~~~~~~~ 224 (885)
+.||++++++|...|. .+..+.+.|+|++|+|||++|+.+++....... .| ..+++++....+...++..
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~-~~v~INc~~~~t~~~~~~~ 100 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIF-DYIHIDALELAGMDALYEK 100 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCE-EEEEEETTCCC--HHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCce-EEEEEeccccCCHHHHHHH
Confidence 6799999999998773 467789999999999999999999998743211 12 3566776677788889999
Q ss_pred HHHHcCCCccccCCCChhHHHHHHHHHh---cCCCeEEEEecCCCccccccccccccccccCCCCC--EEEEEcCChhH-
Q 045686 225 ILRRFEIPDQMWIGKDEDGRANEILSNL---RGKKFVLLLDDVWERLDLSKVGVSDLLDDSSQTGS--KIVFTTRSEEV- 298 (885)
Q Consensus 225 i~~~l~~~~~~~~~~~~~~~~~~l~~~l---~~k~~LlVLDdv~~~~~~~~~~~~~~l~~~~~~gs--~IivTTR~~~v- 298 (885)
|++++..... ...........+...+ .+++++++||+++...+ ..+...+. ......++ .||.++...+.
T Consensus 101 I~~~L~g~~~--~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~-q~~L~~l~-~~~~~~~s~~~vI~i~n~~d~~ 176 (318)
T 3te6_A 101 IWFAISKENL--CGDISLEALNFYITNVPKAKKRKTLILIQNPENLLS-EKILQYFE-KWISSKNSKLSIICVGGHNVTI 176 (318)
T ss_dssp HHHHHSCCC----CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCC-THHHHHHH-HHHHCSSCCEEEEEECCSSCCC
T ss_pred HHHHhcCCCC--CchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhc-chHHHHHH-hcccccCCcEEEEEEecCcccc
Confidence 9999854321 1112222333333332 45679999999976541 11111111 00111233 33344543221
Q ss_pred --------HhhhcccceeeccCCChHHHHHHHHHHhc
Q 045686 299 --------CGEMGARRRFRVECLSPEAALDLFRYKVG 327 (885)
Q Consensus 299 --------~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~ 327 (885)
...+ ....+.+.+++.+|-.+++.+++.
T Consensus 177 ~~~L~~~v~SR~-~~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 177 REQINIMPSLKA-HFTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp HHHHHTCHHHHT-TEEEEECCCCCHHHHHHHHHHHHH
T ss_pred hhhcchhhhccC-CceEEEeCCCCHHHHHHHHHHHHH
Confidence 1122 124689999999999999988773
No 158
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.77 E-value=2.7e-08 Score=106.53 Aligned_cols=180 Identities=11% Similarity=0.069 Sum_probs=105.8
Q ss_pred CCCccchhHHHHHHHHHhhc-----CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHH
Q 045686 151 IGKTVGLDSIISEVWRCIED-----HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESI 225 (885)
Q Consensus 151 ~~~~vgr~~~~~~l~~~L~~-----~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 225 (885)
..+++|++..++.+..++.. .....+.|+|++|+|||++|+.+++... .. .+++..+.......+..
T Consensus 11 ~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~---~~---~~~~~~~~~~~~~~l~~-- 82 (324)
T 1hqc_A 11 LDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELG---VN---LRVTSGPAIEKPGDLAA-- 82 (324)
T ss_dssp TTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHT---CC---EEEECTTTCCSHHHHHH--
T ss_pred HHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhC---CC---EEEEeccccCChHHHHH--
Confidence 35799999999998888742 3446788999999999999999998762 22 23333322222211111
Q ss_pred HHHcCCCccccCCCChhHHHHHHHHHhcCCCeEEEEecCCCccc--cccccccc-------cccc--------cCCCCCE
Q 045686 226 LRRFEIPDQMWIGKDEDGRANEILSNLRGKKFVLLLDDVWERLD--LSKVGVSD-------LLDD--------SSQTGSK 288 (885)
Q Consensus 226 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~--~~~~~~~~-------~l~~--------~~~~gs~ 288 (885)
.+... ..++.+|++||+..... ...+...+ .... ....+..
T Consensus 83 ---------------------~l~~~-~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (324)
T 1hqc_A 83 ---------------------ILANS-LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFT 140 (324)
T ss_dssp ---------------------HHTTT-CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCE
T ss_pred ---------------------HHHHh-ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEE
Confidence 11100 12456888888865321 00000000 0000 0112456
Q ss_pred EEEEcCChh-HHhhhc--ccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCchhHHHHHHHHHh
Q 045686 289 IVFTTRSEE-VCGEMG--ARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPLALVTIGHAMA 363 (885)
Q Consensus 289 IivTTR~~~-v~~~~~--~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~l~ 363 (885)
+|.||.... +...+. ....+.+.+++.++...++.+.+.......+ .+....+++.++|.|..+..+...+.
T Consensus 141 ~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~G~~r~l~~~l~~~~ 215 (324)
T 1hqc_A 141 LIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRIT---EEAALEIGRRSRGTMRVAKRLFRRVR 215 (324)
T ss_dssp EEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCC---HHHHHHHHHHSCSCHHHHHHHHHHHT
T ss_pred EEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 676665432 211111 1247899999999999999888754332222 34578899999999988877665543
No 159
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.76 E-value=3.5e-08 Score=105.75 Aligned_cols=184 Identities=14% Similarity=0.108 Sum_probs=112.0
Q ss_pred CCccchhHHHHHHHHHhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHHHcCC
Q 045686 152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILRRFEI 231 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~ 231 (885)
.+++|++..++.+.+++..+..+.+.++|++|+||||+|+.+++..... ..-...+.+..+.......+. ..+
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~~~-~~~----- 97 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGE-NWRHNFLELNASDERGINVIR-EKV----- 97 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGG-GHHHHEEEEETTCHHHHHTTH-HHH-----
T ss_pred HHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCC-cccCceEEeeccccCchHHHH-HHH-----
Confidence 5689999999999999987766669999999999999999999875311 111122333322211111110 000
Q ss_pred CccccCCCChhHHHHHHHH---HhcCCCeEEEEecCCCcc--ccccccccccccccCCCCCEEEEEcCChhH-Hhhh-cc
Q 045686 232 PDQMWIGKDEDGRANEILS---NLRGKKFVLLLDDVWERL--DLSKVGVSDLLDDSSQTGSKIVFTTRSEEV-CGEM-GA 304 (885)
Q Consensus 232 ~~~~~~~~~~~~~~~~l~~---~l~~k~~LlVLDdv~~~~--~~~~~~~~~~l~~~~~~gs~IivTTR~~~v-~~~~-~~ 304 (885)
..... ...+++.++|+||++... ....+...+. ....++++|+||....- ...+ ..
T Consensus 98 --------------~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le---~~~~~~~~i~~~~~~~~l~~~l~sr 160 (327)
T 1iqp_A 98 --------------KEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTME---MFSSNVRFILSCNYSSKIIEPIQSR 160 (327)
T ss_dssp --------------HHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHH---HTTTTEEEEEEESCGGGSCHHHHHT
T ss_pred --------------HHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHH---hcCCCCeEEEEeCCccccCHHHHhh
Confidence 01110 112568899999997542 1222211111 23456788888876431 1111 12
Q ss_pred cceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCchhHHHHHHHHH
Q 045686 305 RRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPLALVTIGHAM 362 (885)
Q Consensus 305 ~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~l 362 (885)
...+.+.+++.++...++...+.......+ .+..+.|++.++|.|..+..+...+
T Consensus 161 ~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~g~~r~~~~~l~~~ 215 (327)
T 1iqp_A 161 CAIFRFRPLRDEDIAKRLRYIAENEGLELT---EEGLQAILYIAEGDMRRAINILQAA 215 (327)
T ss_dssp EEEEECCCCCHHHHHHHHHHHHHTTTCEEC---HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CcEEEecCCCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 247899999999999999887754332222 3457889999999998766544443
No 160
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.70 E-value=4.3e-08 Score=107.51 Aligned_cols=120 Identities=13% Similarity=0.133 Sum_probs=94.5
Q ss_pred ceEEEecccCcccccccccCCCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCchhhhcccccceee
Q 045686 514 EAVRLSLWGSSIDFLALVEAPSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPEEIGRLKNLHHLN 593 (885)
Q Consensus 514 ~~~~l~l~~~~i~~~~~~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~ 593 (885)
+++.+.+..+ +.......+.+| +|+.+.+.. .++. ++...|.+|.+|+.++|++| .++.+|.....+.+|+.+.
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~--I~~~aF~~c~~L~~l~l~~n-~l~~I~~~aF~~~~L~~l~ 209 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQ--LKEDIFYYCYNLKKADLSKT-KITKLPASTFVYAGIEEVL 209 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCE--ECSSTTTTCTTCCEEECTTS-CCSEECTTTTTTCCCSEEE
T ss_pred CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccE--ehHHHhhCcccCCeeecCCC-cceEechhhEeecccCEEE
Confidence 5677777654 555434455565 588777775 5666 88888999999999999999 8888888766688999999
Q ss_pred ccCCcccccChh-hhccccccEeecCCcccccccCCcccccCcccceeccc
Q 045686 594 LSNTSIGCLPTA-IKRLIKLKVLLLDGIQCHLSIPEGVISSLSSLQVFSCF 643 (885)
Q Consensus 594 Ls~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~ 643 (885)
+..+ +..++.. |.++++|+.+++..+ +..++...|.+ ++|+.+.+.
T Consensus 210 lp~~-l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp 256 (401)
T 4fdw_A 210 LPVT-LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLP 256 (401)
T ss_dssp CCTT-CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEE
T ss_pred eCCc-hheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeC
Confidence 9854 8777765 889999999999986 78888887877 788888884
No 161
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.66 E-value=1.9e-08 Score=108.90 Aligned_cols=99 Identities=18% Similarity=0.187 Sum_probs=76.0
Q ss_pred HHhhc-CCccCCCCchhhhcCCcccEEecCC-CCCCCcCc-hhhhcccccceeeccCCcccccCh-hhhccccccEeecC
Q 045686 543 LARLT-MLHTLPIPSRFFDSMDALEVLDLSY-NLDLNQLP-EEIGRLKNLHHLNLSNTSIGCLPT-AIKRLIKLKVLLLD 618 (885)
Q Consensus 543 ~l~~~-~l~~~~~~~~~~~~l~~L~~L~Ls~-~~~i~~lp-~~i~~L~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~l~ 618 (885)
+++++ .+.. +|. +..+.+|++|+|++ | .++.+| ..+++|.+|++|+|++|+|..+|. .|.+|++|++|+|+
T Consensus 14 ~~~~~n~l~~--ip~--l~~~~~L~~L~l~~~n-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 14 RCTRDGALDS--LHH--LPGAENLTELYIENQQ-HLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp ECCSSCCCTT--TTT--SCSCSCCSEEECCSCS-SCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred EcCCCCCCCc--cCC--CCCCCCeeEEEccCCC-CCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 44555 6666 777 77788888888886 7 777766 568888888888888888877765 46888888888888
Q ss_pred CcccccccCCcccccCcccceecccccccc
Q 045686 619 GIQCHLSIPEGVISSLSSLQVFSCFSTELV 648 (885)
Q Consensus 619 ~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 648 (885)
+|. +..+|...+..++ |+.|++.+|.+.
T Consensus 89 ~N~-l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 89 FNA-LESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SSC-CSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CCc-cceeCHHHcccCC-ceEEEeeCCCcc
Confidence 886 7778877555555 888888888764
No 162
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.54 E-value=3.1e-07 Score=97.86 Aligned_cols=180 Identities=12% Similarity=0.081 Sum_probs=109.3
Q ss_pred CCccchhHHHHHHHHHhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCcc-EEEEEEEcCcccHHHHHHHHHHHcC
Q 045686 152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFD-LVIWVKVSRDANLEKIQESILRRFE 230 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~-~~~wv~v~~~~~~~~~~~~i~~~l~ 230 (885)
.+++|++..++.+.+++..+..+.+.++|++|+||||+|+.+++.... ..+. ..+.++.+....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~--~~~~~~~~~~~~~~~~~------------- 81 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFG--ENWRDNFIEMNASDERG------------- 81 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHT--TCHHHHCEEEETTSTTC-------------
T ss_pred HHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcC--CcccCCeEEEeCccccC-------------
Confidence 568999999999999987766555899999999999999999987531 1111 122333322111
Q ss_pred CCccccCCCChhHHHHHHHHH--h-cCCCeEEEEecCCCccc--cccccccccccccCCCCCEEEEEcCChh-HHhh-hc
Q 045686 231 IPDQMWIGKDEDGRANEILSN--L-RGKKFVLLLDDVWERLD--LSKVGVSDLLDDSSQTGSKIVFTTRSEE-VCGE-MG 303 (885)
Q Consensus 231 ~~~~~~~~~~~~~~~~~l~~~--l-~~k~~LlVLDdv~~~~~--~~~~~~~~~l~~~~~~gs~IivTTR~~~-v~~~-~~ 303 (885)
.............. + .+++.++|+||++.... ...+...+. ....++.+|+||.... +... ..
T Consensus 82 -------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le---~~~~~~~~i~~~~~~~~l~~~l~s 151 (319)
T 2chq_A 82 -------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTME---MYSKSCRFILSCNYVSRIIEPIQS 151 (319)
T ss_dssp -------TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTS---SSSSSEEEEEEESCGGGSCHHHHT
T ss_pred -------hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHH---hcCCCCeEEEEeCChhhcchHHHh
Confidence 01111111111111 1 25688999999965421 122221111 2334677787776543 2111 11
Q ss_pred ccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCchhHHHHHH
Q 045686 304 ARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPLALVTIG 359 (885)
Q Consensus 304 ~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~ 359 (885)
....+.+.+++.++...++.+.+.......+ .+....|++.++|.+..+....
T Consensus 152 r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~---~~~l~~l~~~~~G~~r~~~~~l 204 (319)
T 2chq_A 152 RCAVFRFKPVPKEAMKKRLLEICEKEGVKIT---EDGLEALIYISGGDFRKAINAL 204 (319)
T ss_dssp TCEEEECCCCCHHHHHHHHHHHHHTTCCCBC---HHHHHHHHHTTTTCHHHHHHHH
T ss_pred hCeEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 2347899999999999999888754333222 2457888899999998655443
No 163
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.53 E-value=4.8e-07 Score=102.78 Aligned_cols=194 Identities=12% Similarity=0.130 Sum_probs=108.0
Q ss_pred CCccchhHHHHHHHHHhhc-----------------CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcC
Q 045686 152 GKTVGLDSIISEVWRCIED-----------------HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSR 214 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~-----------------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~ 214 (885)
.+++|++..++++.+++.. +..+.+.|+|++|+||||+|+.+++... + .++.++++.
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~-----~-~~i~in~s~ 112 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG-----Y-DILEQNASD 112 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT-----C-EEEEECTTS
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC-----C-CEEEEeCCC
Confidence 5689999999999999854 1347899999999999999999998762 1 234444444
Q ss_pred cccHHHHHHHHHHHcCCCccccCCCChhHHHHHHHHHhcCCCeEEEEecCCCcccccc--ccccccccccCCCCCEEEEE
Q 045686 215 DANLEKIQESILRRFEIPDQMWIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSK--VGVSDLLDDSSQTGSKIVFT 292 (885)
Q Consensus 215 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~--~~~~~~l~~~~~~gs~IivT 292 (885)
..... +....+........ ...-...... .....+++.+||+||++....-.. +.....+ ....+..||++
T Consensus 113 ~~~~~-~~~~~i~~~~~~~~--~~~~~~~~~~--~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~--l~~~~~~iIli 185 (516)
T 1sxj_A 113 VRSKT-LLNAGVKNALDNMS--VVGYFKHNEE--AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQF--CRKTSTPLILI 185 (516)
T ss_dssp CCCHH-HHHHTGGGGTTBCC--STTTTTC------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHH--HHHCSSCEEEE
T ss_pred cchHH-HHHHHHHHHhcccc--HHHHHhhhhh--hhhccCCCeEEEEECCCccchhhHHHHHHHHHH--HHhcCCCEEEE
Confidence 43332 22222221110000 0000000000 001235778999999975422111 0000000 11223456666
Q ss_pred cCChh---HHhhhcccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCC-chhHHHHHHHH
Q 045686 293 TRSEE---VCGEMGARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRG-LPLALVTIGHA 361 (885)
Q Consensus 293 TR~~~---v~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G-lPLai~~~~~~ 361 (885)
+.+.. +.........+.+.+++.++..+.+...+.......+++ ....|++.++| ++-++..+...
T Consensus 186 ~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~---~l~~la~~s~GdiR~~i~~L~~~ 255 (516)
T 1sxj_A 186 CNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPN---VIDRLIQTTRGDIRQVINLLSTI 255 (516)
T ss_dssp ESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTT---HHHHHHHHTTTCHHHHHHHHTHH
T ss_pred EcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHcCCcHHHHHHHHHHH
Confidence 55432 222122235689999999999999988775433223332 37789999999 44555555433
No 164
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.51 E-value=2.3e-07 Score=90.65 Aligned_cols=47 Identities=23% Similarity=0.369 Sum_probs=42.1
Q ss_pred CCccchhHHHHHHHHHhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 045686 152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 198 (885)
..++||++.++++.+.+.......+.|+|++|+|||++|+.+++...
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 56899999999999999877677889999999999999999998763
No 165
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.51 E-value=2.4e-07 Score=94.23 Aligned_cols=173 Identities=10% Similarity=0.098 Sum_probs=102.6
Q ss_pred CCccch---hHHHHHHHHHhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHHH
Q 045686 152 GKTVGL---DSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILRR 228 (885)
Q Consensus 152 ~~~vgr---~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~ 228 (885)
++++|. +..++.+..+......+.+.|+|++|+||||+|+.+++..... ...+.|+.++.....
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~---~~~~~~~~~~~~~~~---------- 94 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANEL---ERRSFYIPLGIHASI---------- 94 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEEEGGGGGGS----------
T ss_pred hhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEEHHHHHHH----------
Confidence 457763 3556666666665567889999999999999999999887422 223556655432110
Q ss_pred cCCCccccCCCChhHHHHHHHHHhcCCCeEEEEecCCCcccc----ccccccccccccCCCCC-EEEEEcCChh------
Q 045686 229 FEIPDQMWIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDL----SKVGVSDLLDDSSQTGS-KIVFTTRSEE------ 297 (885)
Q Consensus 229 l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~----~~~~~~~~l~~~~~~gs-~IivTTR~~~------ 297 (885)
+ .. ..+.+ .++.+||+||++....- ..+...+. .....+. ++|+||+...
T Consensus 95 ~------------~~----~~~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~--~~~~~~~~~ii~~~~~~~~~~~~~ 155 (242)
T 3bos_A 95 S------------TA----LLEGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYN--RVAEQKRGSLIVSASASPMEAGFV 155 (242)
T ss_dssp C------------GG----GGTTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHH--HHHHHCSCEEEEEESSCTTTTTCC
T ss_pred H------------HH----HHHhc-cCCCEEEEeccccccCCHHHHHHHHHHHH--HHHHcCCCeEEEEcCCCHHHHHHh
Confidence 0 00 00011 35679999999754221 11111100 0111232 4777776421
Q ss_pred ---HHhhhcccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCchhHHHHHH
Q 045686 298 ---VCGEMGARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPLALVTIG 359 (885)
Q Consensus 298 ---v~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~ 359 (885)
+...+.....+.+.+++.++..+++.+.+.......+ .+....|++.++|.+-.+..+.
T Consensus 156 ~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 156 LPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLP---EDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp CHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCC---HHHHHHHHHHTTTCHHHHHHHH
T ss_pred hhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHccCCHHHHHHHH
Confidence 2222222367899999999999999987753222222 3457889999999887766543
No 166
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.51 E-value=1.1e-06 Score=96.64 Aligned_cols=303 Identities=15% Similarity=0.069 Sum_probs=143.1
Q ss_pred CCccceEEEecccCcccccccccCCCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCchhhhccccc
Q 045686 510 DGWHEAVRLSLWGSSIDFLALVEAPSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPEEIGRLKNL 589 (885)
Q Consensus 510 ~~~~~~~~l~l~~~~i~~~~~~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L 589 (885)
.+..+++.+.+.. .++...-..+.+|++|+.+.+..+ ++. ++...|.++..|+.+.+..+ ....-...+.++..+
T Consensus 68 ~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~--I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~ 142 (394)
T 4fs7_A 68 QGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKM--IGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFK 142 (394)
T ss_dssp TTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCE--ECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCS
T ss_pred hCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceE--ccchhhcccccchhhcccCc-eeeecceeeeccccc
Confidence 3344455555542 233322334455555555555432 333 44444555555555444433 111111222222222
Q ss_pred ceeeccCCcccccCh-hhhccccccEeecCCcccccccCCcccccCcccceecccccccccccCcccccccchhhhcCcc
Q 045686 590 HHLNLSNTSIGCLPT-AIKRLIKLKVLLLDGIQCHLSIPEGVISSLSSLQVFSCFSTELVELIDPLFNETAILDELNCLE 668 (885)
Q Consensus 590 ~~L~Ls~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~ 668 (885)
...... .+..+.. .+.++++|+.+.+.++ +..++.+.+.++++|+.+.+..+ +.. + .-..+..+.
T Consensus 143 ~~~~~~--~~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~-~~~-I--------~~~~F~~~~ 208 (394)
T 4fs7_A 143 EITIPE--GVTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN-LKI-I--------RDYCFAECI 208 (394)
T ss_dssp EEECCT--TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT-CCE-E--------CTTTTTTCT
T ss_pred ccccCc--cccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCC-ceE-e--------Cchhhcccc
Confidence 221111 1122222 3667788888888765 45677776778888888777654 111 0 011122233
Q ss_pred CCcceeEEEechhhHHhhhCCCcccccceeEEeccccccccc--hhhhhhccceEEeeccCccceeecCCCCCccccccc
Q 045686 669 HLNDLSLTLFSTEAVDKLLNSPKLQRCIRRLTIESSELLSLE--LGLMLSHLEILRIKCGFMKRLNIDQGLNNRPSFSAL 746 (885)
Q Consensus 669 ~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~--l~~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~l~~L 746 (885)
.|+.+.+.... ............|+.+.+.... ..+. ....+..|+.+.+..+ +..+....+ ..+..|
T Consensus 209 ~L~~i~~~~~~----~~i~~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~-~~~i~~~~F----~~~~~l 278 (394)
T 4fs7_A 209 LLENMEFPNSL----YYLGDFALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNN-KLRIGGSLF----YNCSGL 278 (394)
T ss_dssp TCCBCCCCTTC----CEECTTTTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCT-TCEECSCTT----TTCTTC
T ss_pred ccceeecCCCc----eEeehhhcccCCCceEEECCCc-eecccccccccccceeEEcCCC-cceeecccc----cccccc
Confidence 33322221100 0000001111245555554322 1111 1111256666666332 222222222 124555
Q ss_pred cEEeeccccCCccccccccCCCccEEeEeccCCchhhhcccccCCCcccccccccceeccccccccccccC-CccCCCCc
Q 045686 747 RRLSIILCPDIQNLTCLVHVPSLQFLSLSNCHSLEEIVGTYASGSSESRNYFSNLMAVDLDGLPTLRSICS-GTVAFPSL 825 (885)
Q Consensus 747 ~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~p~L 825 (885)
+.+..... .+.. ..+..+.+|+.+.+.++ ++.+.. ..+.++.+|+.+.|.+ .++.+.. .+..|.+|
T Consensus 279 ~~~~~~~~-~i~~-~~F~~~~~L~~i~l~~~--i~~I~~-------~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L 345 (394)
T 4fs7_A 279 KKVIYGSV-IVPE-KTFYGCSSLTEVKLLDS--VKFIGE-------EAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSL 345 (394)
T ss_dssp CEEEECSS-EECT-TTTTTCTTCCEEEECTT--CCEECT-------TTTTTCTTCCEECCCT--TCCEECTTTTTTCTTC
T ss_pred ceeccCce-eecc-ccccccccccccccccc--cceech-------hhhcCCCCCCEEEeCC--cccEEhHHhccCCCCC
Confidence 55554432 1111 13456677887777653 555533 4566777888888753 3555533 45567788
Q ss_pred cEEeeccCCCCCCcCCCCccccCCceEEEcc
Q 045686 826 QTLSITGCPSLKKLPFNSESARRSLISVRAS 856 (885)
Q Consensus 826 ~~L~i~~C~~L~~lp~~~~~~~~~l~~i~~~ 856 (885)
+.+.+.. +++.++......+.+|+.|...
T Consensus 346 ~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 346 SNINFPL--SLRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp CEECCCT--TCCEECTTTBTTCTTCCEEEEE
T ss_pred CEEEECc--cccEehHHHhhCCCCCCEEEEC
Confidence 8888754 3777877777777778777764
No 167
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.48 E-value=9.4e-07 Score=96.49 Aligned_cols=193 Identities=13% Similarity=0.138 Sum_probs=107.9
Q ss_pred CCccchhHHHHHHHHHhhcCC-CeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHHHcC
Q 045686 152 GKTVGLDSIISEVWRCIEDHN-EKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILRRFE 230 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~~~-~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~ 230 (885)
.+++|++..++.+.+.+..+. ...+.|+|++|+||||+|+.+++..... ..+. ...+.... ....+...-.
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~-~~~~---~~~~~~~~----~~~~~~~~~~ 87 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE-TGIT---ATPCGVCD----NCREIEQGRF 87 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCT-TCSC---SSCCSSSH----HHHHHHTSCC
T ss_pred hhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCC-CCCC---CCCCcccH----HHHHHhccCC
Confidence 468999999999999997654 4578899999999999999998876421 1110 00000000 0111111000
Q ss_pred CCc---cccCCCChhHHHHHHHHHh-----cCCCeEEEEecCCCccc--cccccccccccccCCCCCEEEEEcCChh-HH
Q 045686 231 IPD---QMWIGKDEDGRANEILSNL-----RGKKFVLLLDDVWERLD--LSKVGVSDLLDDSSQTGSKIVFTTRSEE-VC 299 (885)
Q Consensus 231 ~~~---~~~~~~~~~~~~~~l~~~l-----~~k~~LlVLDdv~~~~~--~~~~~~~~~l~~~~~~gs~IivTTR~~~-v~ 299 (885)
... ........+. ...+.+.+ .+++.++|+||++.... ...+...+. ....+..+|++|.... +.
T Consensus 88 ~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le---~~~~~~~~Il~~~~~~~l~ 163 (373)
T 1jr3_A 88 VDLIEIDAASRTKVED-TRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLE---EPPEHVKFLLATTDPQKLP 163 (373)
T ss_dssp SSCEEEETTCSCCSSC-HHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHH---SCCSSEEEEEEESCGGGSC
T ss_pred CceEEecccccCCHHH-HHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHh---cCCCceEEEEEeCChHhCc
Confidence 000 0000011111 12222222 34678999999965321 122211111 2234566777776432 21
Q ss_pred hh-hcccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCchhHHHHHH
Q 045686 300 GE-MGARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPLALVTIG 359 (885)
Q Consensus 300 ~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~ 359 (885)
.. ......+.+.+++.++...++.+.+.......+ .+....|++.++|.|..+..+.
T Consensus 164 ~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~---~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 164 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE---PRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBC---HHHHHHHHHHSSSCHHHHHHHH
T ss_pred HHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHCCCCHHHHHHHH
Confidence 11 122357899999999999999887643222222 2447889999999999876554
No 168
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.48 E-value=1.3e-06 Score=96.91 Aligned_cols=183 Identities=19% Similarity=0.188 Sum_probs=106.1
Q ss_pred CCcc-chhH--HHHHHHHHhhcCC-CeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHH
Q 045686 152 GKTV-GLDS--IISEVWRCIEDHN-EKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILR 227 (885)
Q Consensus 152 ~~~v-gr~~--~~~~l~~~L~~~~-~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~ 227 (885)
..|| |... ....+........ ...+.|+|++|+||||||+.+++......... .+++++.. .+..++..
T Consensus 105 d~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~-~v~~v~~~------~~~~~~~~ 177 (440)
T 2z4s_A 105 ENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDL-RVMYITSE------KFLNDLVD 177 (440)
T ss_dssp GGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSS-CEEEEEHH------HHHHHHHH
T ss_pred hhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCC-eEEEeeHH------HHHHHHHH
Confidence 3455 6433 2333444443333 67889999999999999999998763210011 24454432 23334443
Q ss_pred HcCCCccccCCCChhHHHHHHHHHhcCCCeEEEEecCCCcccc----ccccccccccccCCCCCEEEEEcCCh-------
Q 045686 228 RFEIPDQMWIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDL----SKVGVSDLLDDSSQTGSKIVFTTRSE------- 296 (885)
Q Consensus 228 ~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~----~~~~~~~~l~~~~~~gs~IivTTR~~------- 296 (885)
.+... .. ..+...+..+.-+|++||++....- ..+...+ ......|..||+||++.
T Consensus 178 ~~~~~-------~~----~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l--~~l~~~~~~iIitt~~~~~~l~~l 244 (440)
T 2z4s_A 178 SMKEG-------KL----NEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTF--NELHDSGKQIVICSDREPQKLSEF 244 (440)
T ss_dssp HHHTT-------CH----HHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHH--HHHHTTTCEEEEEESSCGGGCSSC
T ss_pred HHHcc-------cH----HHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHH--HHHHHCCCeEEEEECCCHHHHHHH
Confidence 33211 11 1233334446789999999754321 1111111 11134577899988762
Q ss_pred --hHHhhhcccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCchhHHHH
Q 045686 297 --EVCGEMGARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPLALVT 357 (885)
Q Consensus 297 --~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~ 357 (885)
.+...+.....+.+++++.++-.+++.+.+.......+++ ....|++.++|.+-.+..
T Consensus 245 ~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e---~l~~la~~~~gn~R~l~~ 304 (440)
T 2z4s_A 245 QDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEE---VLNFVAENVDDNLRRLRG 304 (440)
T ss_dssp CHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTT---HHHHHHHHCCSCHHHHHH
T ss_pred HHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHH---HHHHHHHhcCCCHHHHHH
Confidence 2233343446789999999999999998875332222332 467888999998876543
No 169
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.47 E-value=7.7e-08 Score=104.03 Aligned_cols=99 Identities=20% Similarity=0.231 Sum_probs=82.2
Q ss_pred EecccC-cccccccccCCCCchhHHHHHhh-cCCccCCCCchhhhcCCcccEEecCCCCCCCcCc-hhhhcccccceeec
Q 045686 518 LSLWGS-SIDFLALVEAPSCPQVRTLLARL-TMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLP-EEIGRLKNLHHLNL 594 (885)
Q Consensus 518 l~l~~~-~i~~~~~~~~~~~~~Lr~L~l~~-~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp-~~i~~L~~L~~L~L 594 (885)
++..++ .+.. +|.+..+++|+.|+|++ |.+.. ++...|.++++|++|+|++| .++.+| ..+++|++|++|+|
T Consensus 13 v~~~~~n~l~~--ip~l~~~~~L~~L~l~~~n~l~~--~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 13 LRCTRDGALDS--LHHLPGAENLTELYIENQQHLQH--LELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNL 87 (347)
T ss_dssp EECCSSCCCTT--TTTSCSCSCCSEEECCSCSSCCE--ECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEEC
T ss_pred EEcCCCCCCCc--cCCCCCCCCeeEEEccCCCCCCC--cChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeC
Confidence 455665 6776 55577888999999996 89988 88877999999999999999 677664 56799999999999
Q ss_pred cCCcccccChhhhccccccEeecCCcc
Q 045686 595 SNTSIGCLPTAIKRLIKLKVLLLDGIQ 621 (885)
Q Consensus 595 s~~~i~~lp~~i~~L~~L~~L~l~~~~ 621 (885)
++|+|..+|..+.....|++|++.+|.
T Consensus 88 ~~N~l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 88 SFNALESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp CSSCCSCCCSTTTCSCCCCEEECCSSC
T ss_pred CCCccceeCHHHcccCCceEEEeeCCC
Confidence 999999999875554459999999996
No 170
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.43 E-value=1.4e-06 Score=91.05 Aligned_cols=179 Identities=18% Similarity=0.193 Sum_probs=102.4
Q ss_pred CCccchhHHHHHHHHHhhc-------------CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccH
Q 045686 152 GKTVGLDSIISEVWRCIED-------------HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANL 218 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~-------------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 218 (885)
.+++|.++.+++|.+.+.. ....-+.|+|++|+|||++|+.+++... ..| +.+..+.-.
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~---~~~---~~v~~~~~~-- 88 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETN---ATF---IRVVGSELV-- 88 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTT---CEE---EEEEGGGGC--
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhC---CCE---EEEehHHHH--
Confidence 5689999999999888732 3556789999999999999999998762 222 222221110
Q ss_pred HHHHHHHHHHcCCCccccCCCChhHHHHHHHHHhcCCCeEEEEecCCCcc----------cc---cccccccc-ccc-cC
Q 045686 219 EKIQESILRRFEIPDQMWIGKDEDGRANEILSNLRGKKFVLLLDDVWERL----------DL---SKVGVSDL-LDD-SS 283 (885)
Q Consensus 219 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~----------~~---~~~~~~~~-l~~-~~ 283 (885)
.. ..+.........+......++.+|++||++... +. ..+...+. +.. ..
T Consensus 89 ------------~~---~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 153 (285)
T 3h4m_A 89 ------------KK---FIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDA 153 (285)
T ss_dssp ------------CC---STTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCS
T ss_pred ------------Hh---ccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCC
Confidence 00 011111112222233334567899999996421 00 00100000 000 12
Q ss_pred CCCCEEEEEcCChhHH-----hhhcccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCC-chhHHHH
Q 045686 284 QTGSKIVFTTRSEEVC-----GEMGARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRG-LPLALVT 357 (885)
Q Consensus 284 ~~gs~IivTTR~~~v~-----~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G-lPLai~~ 357 (885)
..+..||.||...+.. ........+.+...+.++..+++...+.......+.+ ...+++.+.| .|-.|..
T Consensus 154 ~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~----~~~l~~~~~g~~~~~i~~ 229 (285)
T 3h4m_A 154 RGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVN----LEEIAKMTEGCVGAELKA 229 (285)
T ss_dssp SSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHHCTTCCHHHHHH
T ss_pred CCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCC----HHHHHHHcCCCCHHHHHH
Confidence 2356677788754321 1112234789999999999999998876443333333 4667777777 4544443
No 171
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.37 E-value=1.8e-06 Score=93.39 Aligned_cols=194 Identities=10% Similarity=0.068 Sum_probs=103.8
Q ss_pred CCccchhHHHHHHHHHh-hcCCCeEEEEEcCCCCcHHHHHHHHHhhhc-cCCC--CccEE--------------------
Q 045686 152 GKTVGLDSIISEVWRCI-EDHNEKVIGLYGMGGVGKTTLLKKLNNKFR-DTGH--DFDLV-------------------- 207 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L-~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~-~~~~--~f~~~-------------------- 207 (885)
.+++|++..++.+.+++ ..+..+.+.|+|++|+||||+|+.+++... ...+ .++..
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYH 93 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSE
T ss_pred HHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccce
Confidence 56899999999999988 655554599999999999999999988531 1111 01110
Q ss_pred EEEEEcCcc-cHHHHHHHHHHHcCCCccccCCCChhHHHHHHHHHhcCCCeEEEEecCCCcccccc---ccccccccccC
Q 045686 208 IWVKVSRDA-NLEKIQESILRRFEIPDQMWIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSK---VGVSDLLDDSS 283 (885)
Q Consensus 208 ~wv~v~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~---~~~~~~l~~~~ 283 (885)
+.+..+... .......+++..+..... ..... .+ ..+.+++-++|+|++... +... +...+. ..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~~~-~l-s~l~~~~~vlilDE~~~L-~~~~~~~L~~~le---~~ 161 (354)
T 1sxj_E 94 LEITPSDMGNNDRIVIQELLKEVAQMEQ------VDFQD-SK-DGLAHRYKCVIINEANSL-TKDAQAALRRTME---KY 161 (354)
T ss_dssp EEECCC----CCHHHHHHHHHHHTTTTC--------------------CCEEEEEECTTSS-CHHHHHHHHHHHH---HS
T ss_pred EEecHhhcCCcchHHHHHHHHHHHHhcc------ccccc-cc-cccCCCCeEEEEeCcccc-CHHHHHHHHHHHH---hh
Confidence 111110000 000011222222111000 00000 00 002346779999999873 2221 111111 22
Q ss_pred CCCCEEEEEcCChh-HHhhh-cccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCchhHHHHHH
Q 045686 284 QTGSKIVFTTRSEE-VCGEM-GARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPLALVTIG 359 (885)
Q Consensus 284 ~~gs~IivTTR~~~-v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~ 359 (885)
..++++|+||++.. +...+ .....+.+.+++.++..+.+.+.+.......+ -.+....|++.++|.+..+..+.
T Consensus 162 ~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 162 SKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLE--TKDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp TTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEEC--CSHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCC--cHHHHHHHHHHcCCCHHHHHHHH
Confidence 34678888887642 21111 12367899999999999999887743322211 01347889999999887655443
No 172
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.37 E-value=2.2e-08 Score=108.74 Aligned_cols=130 Identities=22% Similarity=0.220 Sum_probs=61.5
Q ss_pred ceEEEecccCcccccccccC-CCCchhHHHHHhhcCCccCCCCchhh-----hcCCcccEEecCCCCCCCc-----Cchh
Q 045686 514 EAVRLSLWGSSIDFLALVEA-PSCPQVRTLLARLTMLHTLPIPSRFF-----DSMDALEVLDLSYNLDLNQ-----LPEE 582 (885)
Q Consensus 514 ~~~~l~l~~~~i~~~~~~~~-~~~~~Lr~L~l~~~~l~~~~~~~~~~-----~~l~~L~~L~Ls~~~~i~~-----lp~~ 582 (885)
+++.|++++|.+.......+ ..+++|+.|++++|.+.. .....+ ...+.|++|+|++| .++. ++..
T Consensus 102 ~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~--~~~~~L~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~ 178 (372)
T 3un9_A 102 ALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGP--EACKDLRDLLLHDQCQITTLRLSNN-PLTAAGVAVLMEG 178 (372)
T ss_dssp CEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCH--HHHHHHHHHHHSTTCCCCEEECCSS-CCHHHHHHHHHHH
T ss_pred CceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCH--HHHHHHHHHHHhcCCccceeeCCCC-CCChHHHHHHHHH
Confidence 45666666665543222222 123455555555555433 111111 12455666666666 4432 3334
Q ss_pred hhcccccceeeccCCcccc-----cChhhhccccccEeecCCcccccc-----cCCcccccCcccceecccccccc
Q 045686 583 IGRLKNLHHLNLSNTSIGC-----LPTAIKRLIKLKVLLLDGIQCHLS-----IPEGVISSLSSLQVFSCFSTELV 648 (885)
Q Consensus 583 i~~L~~L~~L~Ls~~~i~~-----lp~~i~~L~~L~~L~l~~~~~l~~-----lp~~~i~~L~~L~~L~l~~~~~~ 648 (885)
+..+++|++|+|++|.|.. ++..+..+++|++|++++|. +.. ++.. +...++|++|++++|.+.
T Consensus 179 L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~g~~~l~~~-L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 179 LAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG-AGDTAALALARA-AREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC-CCHHHHHHHHHH-HHHCSSCCEEECTTSSCC
T ss_pred HhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC-CCHHHHHHHHHH-HHhCCCCCEEeccCCCCC
Confidence 4455556666666665532 23344455556666666654 222 1111 334455666666665553
No 173
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.35 E-value=6.5e-08 Score=105.02 Aligned_cols=110 Identities=12% Similarity=0.099 Sum_probs=71.3
Q ss_pred CCchhHHHHHhhcCC--ccCCCCchhhhcCCcccEEecCCCCCCCcC-chhhhc-----ccccceeeccCCcccc--cCh
Q 045686 535 SCPQVRTLLARLTML--HTLPIPSRFFDSMDALEVLDLSYNLDLNQL-PEEIGR-----LKNLHHLNLSNTSIGC--LPT 604 (885)
Q Consensus 535 ~~~~Lr~L~l~~~~l--~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~l-p~~i~~-----L~~L~~L~Ls~~~i~~--lp~ 604 (885)
.++..+.+.+.+|-. ....++. .-+++|++|+|++| .++.. ...+.. ..+|++|+|++|.+.. +..
T Consensus 45 ~~~~~~~lnl~~cl~e~~~~~l~~---~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~ 120 (372)
T 3un9_A 45 VLPPSELLDHLFFHYEFQNQRFSA---EVLSSLRQLNLAGV-RMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRT 120 (372)
T ss_dssp CSCHHHHHHHHHHHHHHHTHHHHH---HHHTTCCEEECTTS-CCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHH
T ss_pred CCChhhhHHHHHHHHHhcCHHHHH---HHHhhCCEEEecCC-CCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHH
Confidence 466778888888721 1101222 23578999999999 66542 222332 3689999999998853 222
Q ss_pred hhhccccccEeecCCcccccccCCccc-----ccCcccceeccccccccc
Q 045686 605 AIKRLIKLKVLLLDGIQCHLSIPEGVI-----SSLSSLQVFSCFSTELVE 649 (885)
Q Consensus 605 ~i~~L~~L~~L~l~~~~~l~~lp~~~i-----~~L~~L~~L~l~~~~~~~ 649 (885)
-...+++|++|++++|. +.......+ ...++|++|++++|.+..
T Consensus 121 l~~~L~~L~~L~Ls~n~-l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~ 169 (372)
T 3un9_A 121 LLPVFLRARKLGLQLNS-LGPEACKDLRDLLLHDQCQITTLRLSNNPLTA 169 (372)
T ss_dssp THHHHHTEEEEECCSSC-CCHHHHHHHHHHHHSTTCCCCEEECCSSCCHH
T ss_pred HHHHHHhccHhhcCCCC-CCHHHHHHHHHHHHhcCCccceeeCCCCCCCh
Confidence 24457889999999996 443322212 346789999999998754
No 174
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.32 E-value=2e-06 Score=94.53 Aligned_cols=299 Identities=13% Similarity=0.092 Sum_probs=171.0
Q ss_pred CcCCccceEEEecccCcccccccccCCCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCchhhhccc
Q 045686 508 SFDGWHEAVRLSLWGSSIDFLALVEAPSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPEEIGRLK 587 (885)
Q Consensus 508 ~~~~~~~~~~l~l~~~~i~~~~~~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~ 587 (885)
.|.+..+++.+.+..+ +....-..+..|++|+.+.+..+ +.. +....|.++..+......... ..-...+.++.
T Consensus 89 aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~--i~~~aF~~~~~~~~~~~~~~~--~i~~~aF~~c~ 162 (394)
T 4fs7_A 89 AFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKS--IGVEAFKGCDFKEITIPEGVT--VIGDEAFATCE 162 (394)
T ss_dssp TTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCE--ECTTTTTTCCCSEEECCTTCC--EECTTTTTTCT
T ss_pred HhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eee--ecceeeecccccccccCcccc--ccchhhhcccC
Confidence 3556678888888644 55533456778888888666544 444 666667777766655544431 22235678899
Q ss_pred ccceeeccCCcccccChh-hhccccccEeecCCcccccccCCcccccCcccceecccccccccccCcccccccchhhhcC
Q 045686 588 NLHHLNLSNTSIGCLPTA-IKRLIKLKVLLLDGIQCHLSIPEGVISSLSSLQVFSCFSTELVELIDPLFNETAILDELNC 666 (885)
Q Consensus 588 ~L~~L~Ls~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~ 666 (885)
+|+.+.+..+ +..++.. +.++.+|+.+.+..+ +..++...+.++..|+.+.+..+...- . ...-.
T Consensus 163 ~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~~~~i--~---------~~~~~ 228 (394)
T 4fs7_A 163 SLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPNSLYYL--G---------DFALS 228 (394)
T ss_dssp TCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTTCCEE--C---------TTTTT
T ss_pred CCcEEecCCc-cceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecCCCceEe--e---------hhhcc
Confidence 9999999765 4556554 778899999999876 677887778899999988876543221 0 00111
Q ss_pred ccCCcceeEEEechhhHHhhhCCCcccccceeEEecccc--ccccchhhhhhccceEEeeccCccceeecCCCCCccccc
Q 045686 667 LEHLNDLSLTLFSTEAVDKLLNSPKLQRCIRRLTIESSE--LLSLELGLMLSHLEILRIKCGFMKRLNIDQGLNNRPSFS 744 (885)
Q Consensus 667 L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~l~~~~~~L~~L~l~~~~l~~l~~~~~~~~~~~l~ 744 (885)
...|+.+.+... ...+.. .....+..++.+.+..+. +....... +..++.+...... ++... ...+.
T Consensus 229 ~~~l~~i~ip~~-~~~i~~--~~f~~~~~l~~~~~~~~~~~i~~~~F~~-~~~l~~~~~~~~~---i~~~~----F~~~~ 297 (394)
T 4fs7_A 229 KTGVKNIIIPDS-FTELGK--SVFYGCTDLESISIQNNKLRIGGSLFYN-CSGLKKVIYGSVI---VPEKT----FYGCS 297 (394)
T ss_dssp TCCCCEEEECTT-CCEECS--STTTTCSSCCEEEECCTTCEECSCTTTT-CTTCCEEEECSSE---ECTTT----TTTCT
T ss_pred cCCCceEEECCC-ceeccc--ccccccccceeEEcCCCcceeecccccc-ccccceeccCcee---ecccc----ccccc
Confidence 123333333110 000000 001112355666665433 11111111 2555555543221 11111 12367
Q ss_pred cccEEeeccccCCcccc--ccccCCCccEEeEeccCCchhhhcccccCCCcccccccccceeccccccccccccC-CccC
Q 045686 745 ALRRLSIILCPDIQNLT--CLVHVPSLQFLSLSNCHSLEEIVGTYASGSSESRNYFSNLMAVDLDGLPTLRSICS-GTVA 821 (885)
Q Consensus 745 ~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~ 821 (885)
+|+.+.+.+. ++.++ .+..+.+|+.+.|.+ .++.+.. ..+.++.+|+.+.|.. ++..+.. .+..
T Consensus 298 ~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~-------~aF~~c~~L~~i~lp~--~l~~I~~~aF~~ 364 (394)
T 4fs7_A 298 SLTEVKLLDS--VKFIGEEAFESCTSLVSIDLPY--LVEEIGK-------RSFRGCTSLSNINFPL--SLRKIGANAFQG 364 (394)
T ss_dssp TCCEEEECTT--CCEECTTTTTTCTTCCEECCCT--TCCEECT-------TTTTTCTTCCEECCCT--TCCEECTTTBTT
T ss_pred cccccccccc--cceechhhhcCCCCCCEEEeCC--cccEEhH-------HhccCCCCCCEEEECc--cccEehHHHhhC
Confidence 8888887653 55553 466788888888864 3555533 4677788888888864 2555543 4567
Q ss_pred CCCccEEeeccCCCCCCcCCCCccccCCceEE
Q 045686 822 FPSLQTLSITGCPSLKKLPFNSESARRSLISV 853 (885)
Q Consensus 822 ~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~i 853 (885)
|++|+.+++.+ .++.+.. ....+.+|+.|
T Consensus 365 C~~L~~i~lp~--~~~~~~~-~F~~c~~L~~I 393 (394)
T 4fs7_A 365 CINLKKVELPK--RLEQYRY-DFEDTTKFKWI 393 (394)
T ss_dssp CTTCCEEEEEG--GGGGGGG-GBCTTCEEEEE
T ss_pred CCCCCEEEECC--CCEEhhh-eecCCCCCcEE
Confidence 78888888754 3444442 23344555544
No 175
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.31 E-value=1.4e-05 Score=88.36 Aligned_cols=176 Identities=15% Similarity=0.197 Sum_probs=103.2
Q ss_pred CCCccchhHHH---HHHHHHhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCc-ccHHHHHHHHH
Q 045686 151 IGKTVGLDSII---SEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRD-ANLEKIQESIL 226 (885)
Q Consensus 151 ~~~~vgr~~~~---~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~-~~~~~~~~~i~ 226 (885)
..++||.+..+ ..+...+.......+.|+|++|+||||+|+.+++... ..| +.++.. .....+ ..++
T Consensus 25 l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~---~~f-----~~l~a~~~~~~~i-r~~~ 95 (447)
T 3pvs_A 25 LAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYAN---ADV-----ERISAVTSGVKEI-REAI 95 (447)
T ss_dssp TTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTT---CEE-----EEEETTTCCHHHH-HHHH
T ss_pred HHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhC---CCe-----EEEEeccCCHHHH-HHHH
Confidence 35689999888 7788888777778899999999999999999998762 322 222211 111111 1111
Q ss_pred HHcCCCccccCCCChhHHHHHHH-HHhcCCCeEEEEecCCCccc--cccccccccccccCCCCCEEEE-EcCChh--H-H
Q 045686 227 RRFEIPDQMWIGKDEDGRANEIL-SNLRGKKFVLLLDDVWERLD--LSKVGVSDLLDDSSQTGSKIVF-TTRSEE--V-C 299 (885)
Q Consensus 227 ~~l~~~~~~~~~~~~~~~~~~l~-~~l~~k~~LlVLDdv~~~~~--~~~~~~~~~l~~~~~~gs~Iiv-TTR~~~--v-~ 299 (885)
.... ....+++.+|++|++..... ...+... .......+|. ||.+.. + .
T Consensus 96 -------------------~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~-----le~~~v~lI~att~n~~~~l~~ 151 (447)
T 3pvs_A 96 -------------------ERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPH-----IEDGTITFIGATTENPSFELNS 151 (447)
T ss_dssp -------------------HHHHHHHHTTCCEEEEEETTTCC------CCHHH-----HHTTSCEEEEEESSCGGGSSCH
T ss_pred -------------------HHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHH-----HhcCceEEEecCCCCcccccCH
Confidence 1111 11246788999999975421 1111111 1112234443 555542 1 1
Q ss_pred hhhcccceeeccCCChHHHHHHHHHHhcCccc----CCccchHHHHHHHHHHhCCchhHHHHHH
Q 045686 300 GEMGARRRFRVECLSPEAALDLFRYKVGEDVY----SSHFEISNLAQTVVEECRGLPLALVTIG 359 (885)
Q Consensus 300 ~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~----~~~~~~~~~~~~I~~~c~GlPLai~~~~ 359 (885)
........+.+.+++.++...++.+.+..... ....--.+..+.|++.++|.+-.+..+.
T Consensus 152 aL~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~L 215 (447)
T 3pvs_A 152 ALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTL 215 (447)
T ss_dssp HHHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHH
T ss_pred HHhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 11223357889999999999999888743110 0011123457788888999887655443
No 176
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.27 E-value=4.5e-07 Score=85.28 Aligned_cols=88 Identities=13% Similarity=0.186 Sum_probs=65.0
Q ss_pred ccccEEeeccccCCcc--ccccccCCCccEEeEeccCCchhhhcccccCCCccccc----ccccceecccccccccccc-
Q 045686 744 SALRRLSIILCPDIQN--LTCLVHVPSLQFLSLSNCHSLEEIVGTYASGSSESRNY----FSNLMAVDLDGLPTLRSIC- 816 (885)
Q Consensus 744 ~~L~~L~L~~c~~l~~--l~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~----~~~L~~L~l~~~~~l~~~~- 816 (885)
.+|+.|++++|. +++ +..+..+++|++|+|++|..+++-.. ..+.. .++|++|+|++|++++.-.
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL-------~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl 132 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCL-------ERLSQLENLQKSMLEMEIISCGNVTDKGI 132 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHH-------HHHHTCHHHHHHCCEEEEESCTTCCHHHH
T ss_pred ceEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHH-------HHHHhcccccCCCCEEEcCCCCcCCHHHH
Confidence 468899999884 765 45677889999999999987776532 12222 3579999999998877422
Q ss_pred CCccCCCCccEEeeccCCCCCCc
Q 045686 817 SGTVAFPSLQTLSITGCPSLKKL 839 (885)
Q Consensus 817 ~~~~~~p~L~~L~i~~C~~L~~l 839 (885)
..+..+|+|++|++++|+.++..
T Consensus 133 ~~L~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 133 IALHHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp HHGGGCTTCCEEEEESCTTCCCH
T ss_pred HHHhcCCCCCEEECCCCCCCCch
Confidence 12456899999999999988864
No 177
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.27 E-value=2e-06 Score=93.08 Aligned_cols=193 Identities=11% Similarity=0.181 Sum_probs=108.3
Q ss_pred CCccchhHHHHHHHHHhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCc-cEEEEEEEcCcccHHHHHHHHHHHcC
Q 045686 152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDF-DLVIWVKVSRDANLEKIQESILRRFE 230 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f-~~~~wv~v~~~~~~~~~~~~i~~~l~ 230 (885)
.+++|+++.++.+..++..+..+.+.|+|++|+||||+|+.+++..... ..+ ..+..+..+.......+. +....+.
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 114 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGP-DLMKSRILELNASDERGISIVR-EKVKNFA 114 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHH-HHHTTSEEEECSSSCCCHHHHT-THHHHHH
T ss_pred HHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCC-cccccceEEEccccccchHHHH-HHHHHHh
Confidence 5689999999999999977654558999999999999999998875210 001 112333333322322221 1111110
Q ss_pred -CCccccCCCChhHHHHHHHHHhcCCCeEEEEecCCCccc--cccccccccccccCCCCCEEEEEcCChh-HHhhh-ccc
Q 045686 231 -IPDQMWIGKDEDGRANEILSNLRGKKFVLLLDDVWERLD--LSKVGVSDLLDDSSQTGSKIVFTTRSEE-VCGEM-GAR 305 (885)
Q Consensus 231 -~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~--~~~~~~~~~l~~~~~~gs~IivTTR~~~-v~~~~-~~~ 305 (885)
.... ..... .....-.+++-++++|++..... ...+...+. ......++|++|.... +...+ ...
T Consensus 115 ~~~~~--~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le---~~~~~~~~il~~~~~~~l~~~l~sR~ 184 (353)
T 1sxj_D 115 RLTVS--KPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTME---TYSGVTRFCLICNYVTRIIDPLASQC 184 (353)
T ss_dssp HSCCC--CCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHH---HTTTTEEEEEEESCGGGSCHHHHHHS
T ss_pred hhccc--ccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHH---hcCCCceEEEEeCchhhCcchhhccC
Confidence 0000 00000 00011123557999999865321 111111111 2233566777665432 21111 112
Q ss_pred ceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCchhHHHHHH
Q 045686 306 RRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPLALVTIG 359 (885)
Q Consensus 306 ~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~ 359 (885)
..+.+.+++.++....+.+.+.......+ .+..+.|++.++|.|..+..+.
T Consensus 185 ~~i~~~~~~~~~~~~~l~~~~~~~~~~i~---~~~l~~l~~~~~G~~r~~~~~l 235 (353)
T 1sxj_D 185 SKFRFKALDASNAIDRLRFISEQENVKCD---DGVLERILDISAGDLRRGITLL 235 (353)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTCCCC---HHHHHHHHHHTSSCHHHHHHHH
T ss_pred ceEEeCCCCHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 47889999999999999887754332222 3457899999999998755433
No 178
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.17 E-value=1.3e-05 Score=85.42 Aligned_cols=175 Identities=15% Similarity=0.161 Sum_probs=96.6
Q ss_pred CCcc-chh--HHHHHHHHHhhcC--CCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHH
Q 045686 152 GKTV-GLD--SIISEVWRCIEDH--NEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESIL 226 (885)
Q Consensus 152 ~~~v-gr~--~~~~~l~~~L~~~--~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~ 226 (885)
+.|| |.. .....+..+...+ ....+.|+|++|+||||||+.+++..... .. .++++++. .....+.
T Consensus 11 ~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~--~~-~~~~i~~~------~~~~~~~ 81 (324)
T 1l8q_A 11 ENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR--GY-RVIYSSAD------DFAQAMV 81 (324)
T ss_dssp SSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT--TC-CEEEEEHH------HHHHHHH
T ss_pred ccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC--CC-EEEEEEHH------HHHHHHH
Confidence 3455 532 2334444554443 35678999999999999999999877422 11 23444432 2233333
Q ss_pred HHcCCCccccCCCChhHHHHHHHHHhcCCCeEEEEecCCCccc--c--ccccccccccccCCCCCEEEEEcCCh------
Q 045686 227 RRFEIPDQMWIGKDEDGRANEILSNLRGKKFVLLLDDVWERLD--L--SKVGVSDLLDDSSQTGSKIVFTTRSE------ 296 (885)
Q Consensus 227 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~--~--~~~~~~~~l~~~~~~gs~IivTTR~~------ 296 (885)
..+.. .... .+...+. +.-+|++||+..... . ..+...+ ......|..||+||...
T Consensus 82 ~~~~~-------~~~~----~~~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l--~~~~~~~~~iii~~~~~~~~l~~ 147 (324)
T 1l8q_A 82 EHLKK-------GTIN----EFRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIF--NTLYLLEKQIILASDRHPQKLDG 147 (324)
T ss_dssp HHHHH-------TCHH----HHHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHH--HHHHHTTCEEEEEESSCGGGCTT
T ss_pred HHHHc-------CcHH----HHHHHhc-CCCEEEEcCcccccCChHHHHHHHHHH--HHHHHCCCeEEEEecCChHHHHH
Confidence 33211 0111 1222222 467999999965432 1 1111111 01123456788877642
Q ss_pred ---hHHhhhcccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCchhH
Q 045686 297 ---EVCGEMGARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPLA 354 (885)
Q Consensus 297 ---~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLa 354 (885)
.+...+.....+.+.+ +.++..+++.+.+.......+ .+....|++.+ |..-.
T Consensus 148 l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~---~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 148 VSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELR---KEVIDYLLENT-KNVRE 203 (324)
T ss_dssp SCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCC---HHHHHHHHHHC-SSHHH
T ss_pred hhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHhC-CCHHH
Confidence 1223333335689999 999999999988753322222 34567788888 76543
No 179
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.16 E-value=4.5e-05 Score=78.33 Aligned_cols=182 Identities=13% Similarity=0.127 Sum_probs=98.0
Q ss_pred CCccchhHHHHHHHHHhh---c---------CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHH
Q 045686 152 GKTVGLDSIISEVWRCIE---D---------HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLE 219 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~---~---------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 219 (885)
.+++|.+..++.+.+++. . ...+-+.|+|++|+|||++|+.+++... .. .+.+..+.-.+
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~---~~---~~~~~~~~~~~-- 77 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQ---VP---FLAMAGAEFVE-- 77 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHT---CC---EEEEETTTTSS--
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhC---CC---EEEechHHHHh--
Confidence 568999988888776552 1 2345688999999999999999998762 22 23333322110
Q ss_pred HHHHHHHHHcCCCccccCCCChhHHHHHHHHHhcCCCeEEEEecCCCccc-------------ccccccccc--ccc-cC
Q 045686 220 KIQESILRRFEIPDQMWIGKDEDGRANEILSNLRGKKFVLLLDDVWERLD-------------LSKVGVSDL--LDD-SS 283 (885)
Q Consensus 220 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~-------------~~~~~~~~~--l~~-~~ 283 (885)
. +.+.........+.......+.+|++||++.... .......+. +.. ..
T Consensus 78 -----------~----~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 142 (262)
T 2qz4_A 78 -----------V----IGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGT 142 (262)
T ss_dssp -----------S----STTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCT
T ss_pred -----------h----ccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCC
Confidence 0 0111111222223333345678999999975310 000000000 000 11
Q ss_pred CCCCEEEEEcCChhHH-hhh----cccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCchh-HHHH
Q 045686 284 QTGSKIVFTTRSEEVC-GEM----GARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPL-ALVT 357 (885)
Q Consensus 284 ~~gs~IivTTR~~~v~-~~~----~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPL-ai~~ 357 (885)
..+..||.||...... ..+ .....+.+...+.++-.+++...+.......+ .......+++.+.|.+- .|..
T Consensus 143 ~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~--~~~~~~~l~~~~~g~~~~~l~~ 220 (262)
T 2qz4_A 143 TDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQS--STFYSQRLAELTPGFSGADIAN 220 (262)
T ss_dssp TCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBT--HHHHHHHHHHTCTTCCHHHHHH
T ss_pred CCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcc--hhhHHHHHHHHCCCCCHHHHHH
Confidence 2345566666554321 111 12356788999999999999887743322221 12234788888888754 4443
Q ss_pred H
Q 045686 358 I 358 (885)
Q Consensus 358 ~ 358 (885)
+
T Consensus 221 l 221 (262)
T 2qz4_A 221 I 221 (262)
T ss_dssp H
T ss_pred H
Confidence 3
No 180
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.15 E-value=1.4e-05 Score=86.87 Aligned_cols=47 Identities=17% Similarity=0.232 Sum_probs=37.1
Q ss_pred CCccchhHHHHHH---HHHhhcCC--CeEEEEEcCCCCcHHHHHHHHHhhhc
Q 045686 152 GKTVGLDSIISEV---WRCIEDHN--EKVIGLYGMGGVGKTTLLKKLNNKFR 198 (885)
Q Consensus 152 ~~~vgr~~~~~~l---~~~L~~~~--~~vi~I~G~gG~GKTtLa~~v~~~~~ 198 (885)
.++||++..++.+ .+.+.... .+.+.|+|++|+|||++|+.+++...
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred hhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5789999887764 44444433 36899999999999999999998873
No 181
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.14 E-value=1.3e-05 Score=84.82 Aligned_cols=152 Identities=13% Similarity=0.167 Sum_probs=85.6
Q ss_pred CccchhHHHHHHHHHhh---------------cCCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCccc
Q 045686 153 KTVGLDSIISEVWRCIE---------------DHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDAN 217 (885)
Q Consensus 153 ~~vgr~~~~~~l~~~L~---------------~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~ 217 (885)
+++|.+..++.|.+.+. ......+.|+|++|+|||++|+.+++..... ......-++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~-~~~~~~~~~~~~~~-- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRL-GYVRKGHLVSVTRD-- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHT-TSSSSCCEEEECGG--
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhc-CCcCCCcEEEEcHH--
Confidence 37899998888877653 2344578999999999999999888776421 22111112333211
Q ss_pred HHHHHHHHHHHcCCCccccCCCChhHHHHHHHHHhcCCCeEEEEecCCCcc--------c---cccccccccccccCCCC
Q 045686 218 LEKIQESILRRFEIPDQMWIGKDEDGRANEILSNLRGKKFVLLLDDVWERL--------D---LSKVGVSDLLDDSSQTG 286 (885)
Q Consensus 218 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~--------~---~~~~~~~~~l~~~~~~g 286 (885)
.+... ..+.........+... +.-+|++||++... . ...+...+. ....+
T Consensus 109 ----------~l~~~---~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~---~~~~~ 169 (309)
T 3syl_A 109 ----------DLVGQ---YIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVME---NNRDD 169 (309)
T ss_dssp ----------GTCCS---STTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHH---HCTTT
T ss_pred ----------Hhhhh---cccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHh---cCCCC
Confidence 01000 0111111222222222 34699999997431 0 011111111 23345
Q ss_pred CEEEEEcCChhH----------HhhhcccceeeccCCChHHHHHHHHHHhcC
Q 045686 287 SKIVFTTRSEEV----------CGEMGARRRFRVECLSPEAALDLFRYKVGE 328 (885)
Q Consensus 287 s~IivTTR~~~v----------~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~ 328 (885)
..||+||..... ... ....+.+.+++.++-..++.+.+..
T Consensus 170 ~~~i~~~~~~~~~~~~~~~~~l~~R--~~~~i~~~~~~~~~~~~il~~~l~~ 219 (309)
T 3syl_A 170 LVVILAGYADRMENFFQSNPGFRSR--IAHHIEFPDYSDEELFEIAGHMLDD 219 (309)
T ss_dssp CEEEEEECHHHHHHHHHHSTTHHHH--EEEEEEECCCCHHHHHHHHHHHHHH
T ss_pred EEEEEeCChHHHHHHHhhCHHHHHh--CCeEEEcCCcCHHHHHHHHHHHHHH
Confidence 677777764322 221 2367899999999999999887753
No 182
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.13 E-value=4.9e-05 Score=78.57 Aligned_cols=199 Identities=15% Similarity=0.116 Sum_probs=104.1
Q ss_pred CCccchhHHHHHHHHH-------hh---cCCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHH
Q 045686 152 GKTVGLDSIISEVWRC-------IE---DHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKI 221 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~-------L~---~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~ 221 (885)
..++|....++++... +. ......+.|+|++|+|||++|+.+++... ..| +.+..+...
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~---~~~---~~i~~~~~~----- 101 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESN---FPF---IKICSPDKM----- 101 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHT---CSE---EEEECGGGC-----
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhC---CCE---EEEeCHHHh-----
Confidence 4578887777666662 32 34557889999999999999999998752 222 222222110
Q ss_pred HHHHHHHcCCCccccCCCChhHHHHHHHHHhcCCCeEEEEecCCCccc-----------c-ccccccccccccCCCCCEE
Q 045686 222 QESILRRFEIPDQMWIGKDEDGRANEILSNLRGKKFVLLLDDVWERLD-----------L-SKVGVSDLLDDSSQTGSKI 289 (885)
Q Consensus 222 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~-----------~-~~~~~~~~l~~~~~~gs~I 289 (885)
.+... ..........+......+.-+|++||++.... + ..+...+.-.........|
T Consensus 102 -------~g~~~----~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~i 170 (272)
T 1d2n_A 102 -------IGFSE----TAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLI 170 (272)
T ss_dssp -------TTCCH----HHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEE
T ss_pred -------cCCch----HHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEE
Confidence 11000 00001112222233345678999999854210 0 0110000000001223346
Q ss_pred EEEcCChhHHhhh---c-ccceeeccCCCh-HHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCC------chhHHHHH
Q 045686 290 VFTTRSEEVCGEM---G-ARRRFRVECLSP-EAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRG------LPLALVTI 358 (885)
Q Consensus 290 ivTTR~~~v~~~~---~-~~~~~~l~~L~~-~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G------lPLai~~~ 358 (885)
|.||...+....+ . -...+.+.+++. ++...++.+... .+ .+....|++.+.| .+-++..+
T Consensus 171 i~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~~-----~~---~~~~~~l~~~~~g~~~~g~ir~l~~~l 242 (272)
T 1d2n_A 171 IGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLGN-----FK---DKERTTIAQQVKGKKVWIGIKKLLMLI 242 (272)
T ss_dssp EEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHTC-----SC---HHHHHHHHHHHTTSEEEECHHHHHHHH
T ss_pred EEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcCC-----CC---HHHHHHHHHHhcCCCccccHHHHHHHH
Confidence 6677766543321 1 135678888888 666666655321 11 2346788888887 44444444
Q ss_pred HHHHhcCCChhhHHHHHHHHhcC
Q 045686 359 GHAMASRMGPTQWRYAVGELQRY 381 (885)
Q Consensus 359 ~~~l~~~~~~~~w~~~~~~l~~~ 381 (885)
-... .......+..+++.+...
T Consensus 243 ~~a~-~~~~~~~~~~~~~~l~~~ 264 (272)
T 1d2n_A 243 EMSL-QMDPEYRVRKFLALLREE 264 (272)
T ss_dssp HHHT-TSCGGGHHHHHHHHHHHT
T ss_pred HHHh-hhchHHHHHHHHHHHHHc
Confidence 3332 224556777777766554
No 183
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.12 E-value=5.4e-05 Score=79.40 Aligned_cols=175 Identities=14% Similarity=0.184 Sum_probs=100.5
Q ss_pred CCccchhHHHHHHHHHhhc-------------CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccH
Q 045686 152 GKTVGLDSIISEVWRCIED-------------HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANL 218 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~-------------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 218 (885)
.+++|.++.+++|.+++.. ...+.+.|+|++|+|||+||+.+++... ..| +.+. .
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~---~~~-----i~v~----~ 82 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ---ANF-----ISIK----G 82 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTT---CEE-----EEEC----H
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhC---CCE-----EEEE----h
Confidence 4688999988888887632 4567899999999999999999998762 222 2222 2
Q ss_pred HHHHHHHHHHcCCCccccCCCChhHHHHHHHHHhcCCCeEEEEecCCCccc----------------ccccccccccccc
Q 045686 219 EKIQESILRRFEIPDQMWIGKDEDGRANEILSNLRGKKFVLLLDDVWERLD----------------LSKVGVSDLLDDS 282 (885)
Q Consensus 219 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~----------------~~~~~~~~~l~~~ 282 (885)
..+.... .|. ........+.......+.++++|+++.... ...+...+. ...
T Consensus 83 ~~l~~~~---~g~--------~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~-~~~ 150 (301)
T 3cf0_A 83 PELLTMW---FGE--------SEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMD-GMS 150 (301)
T ss_dssp HHHHHHH---HTT--------CTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHH-SSC
T ss_pred HHHHhhh---cCc--------hHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhh-ccc
Confidence 2222221 121 112222333334456789999999974210 001100000 001
Q ss_pred CCCCCEEEEEcCChhHH-hh-h---cccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCchhH
Q 045686 283 SQTGSKIVFTTRSEEVC-GE-M---GARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPLA 354 (885)
Q Consensus 283 ~~~gs~IivTTR~~~v~-~~-~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLa 354 (885)
...+..||.||...+.. .. . .-...+.+...+.++-.+++...+.......+.+ ...+++.+.|.|-+
T Consensus 151 ~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~----~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 151 TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVD----LEFLAKMTNGFSGA 223 (301)
T ss_dssp TTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHTCSSCCHH
T ss_pred CCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccch----HHHHHHHcCCCCHH
Confidence 22345677777654322 11 1 2235688999999999999988775433222233 34566678777654
No 184
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.09 E-value=9.8e-05 Score=78.11 Aligned_cols=183 Identities=15% Similarity=0.177 Sum_probs=101.6
Q ss_pred CCccchhHHHHHHHHHhh------------cCCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHH
Q 045686 152 GKTVGLDSIISEVWRCIE------------DHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLE 219 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~------------~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 219 (885)
.+++|.++.++.|.+.+. ....+-|.++|++|+|||+||+.+++... ... .+.+..+.-.
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~--~~~---~~~i~~~~l~--- 83 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN--NST---FFSISSSDLV--- 83 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT--SCE---EEEEECCSSC---
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC--CCc---EEEEEhHHHH---
Confidence 468899999888887762 12346789999999999999999998762 111 2233332211
Q ss_pred HHHHHHHHHcCCCccccCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccc---------cccccc--cccc--cCCCC
Q 045686 220 KIQESILRRFEIPDQMWIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLS---------KVGVSD--LLDD--SSQTG 286 (885)
Q Consensus 220 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~---------~~~~~~--~l~~--~~~~g 286 (885)
.. +.+.........+...-..++.+|++||++....-. .+...+ .+.. ....+
T Consensus 84 -----------~~---~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~ 149 (322)
T 1xwi_A 84 -----------SK---WLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDG 149 (322)
T ss_dssp -----------CS---SCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTT
T ss_pred -----------hh---hhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCC
Confidence 00 112222222222223334678899999997541100 000000 0000 01234
Q ss_pred CEEEEEcCChhHH-hh--hcccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCc-hhHHHHHH
Q 045686 287 SKIVFTTRSEEVC-GE--MGARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGL-PLALVTIG 359 (885)
Q Consensus 287 s~IivTTR~~~v~-~~--~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~Gl-PLai~~~~ 359 (885)
..||.||...+.. .. -.....+.+...+.++-.+++...+.......+ ......|++.+.|. +-.|..+.
T Consensus 150 v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~---~~~l~~la~~t~G~sgadl~~l~ 223 (322)
T 1xwi_A 150 ILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLT---EADFRELGRKTDGYSGADISIIV 223 (322)
T ss_dssp EEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCC---HHHHHHHHHTCTTCCHHHHHHHH
T ss_pred EEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCC---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 4455566543211 11 123356788999999999999888754322111 23467889999887 44455444
No 185
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.09 E-value=2.5e-05 Score=85.65 Aligned_cols=99 Identities=17% Similarity=0.242 Sum_probs=58.1
Q ss_pred cccccEEeeccccCCccc--cccccCCCccEEeEeccCCchhhhcccccCCCcccccccccceeccccccccccccC-Cc
Q 045686 743 FSALRRLSIILCPDIQNL--TCLVHVPSLQFLSLSNCHSLEEIVGTYASGSSESRNYFSNLMAVDLDGLPTLRSICS-GT 819 (885)
Q Consensus 743 l~~L~~L~L~~c~~l~~l--~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~ 819 (885)
+.+|+.+.+.+. +..+ ..+..+++|+.+.+.. .+..++. ..+.++.+|+.+.|.. .++.+.. .+
T Consensus 264 c~~L~~i~lp~~--~~~I~~~aF~~c~~L~~i~l~~--~i~~I~~-------~aF~~c~~L~~i~lp~--~v~~I~~~aF 330 (394)
T 4gt6_A 264 CAYLASVKMPDS--VVSIGTGAFMNCPALQDIEFSS--RITELPE-------SVFAGCISLKSIDIPE--GITQILDDAF 330 (394)
T ss_dssp CSSCCEEECCTT--CCEECTTTTTTCTTCCEEECCT--TCCEECT-------TTTTTCTTCCEEECCT--TCCEECTTTT
T ss_pred cccccEEecccc--cceecCcccccccccccccCCC--cccccCc-------eeecCCCCcCEEEeCC--cccEehHhHh
Confidence 566666666443 2222 2345667777777643 3444433 3566677777777753 3444432 35
Q ss_pred cCCCCccEEeeccCCCCCCcCCCCccccCCceEEEcc
Q 045686 820 VAFPSLQTLSITGCPSLKKLPFNSESARRSLISVRAS 856 (885)
Q Consensus 820 ~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~i~~~ 856 (885)
..|.+|+.+.|-+ +++.++......+.+|+.|...
T Consensus 331 ~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~ 365 (394)
T 4gt6_A 331 AGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYS 365 (394)
T ss_dssp TTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEES
T ss_pred hCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEEC
Confidence 5667777777743 4677776666666777766654
No 186
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.08 E-value=2.4e-05 Score=83.25 Aligned_cols=173 Identities=12% Similarity=0.080 Sum_probs=98.0
Q ss_pred CCccchhHHHHHHHHHhhcCC-CeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHHHcC
Q 045686 152 GKTVGLDSIISEVWRCIEDHN-EKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILRRFE 230 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~~~-~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~ 230 (885)
.+++|++..++.+.+++..+. ..++.+.|++|+||||+|+.+++... . .++.++.+.. ....+ .+.+...
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~---~---~~~~i~~~~~-~~~~i-~~~~~~~- 96 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVN---A---DMMFVNGSDC-KIDFV-RGPLTNF- 96 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTT---E---EEEEEETTTC-CHHHH-HTHHHHH-
T ss_pred HHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhC---C---CEEEEccccc-CHHHH-HHHHHHH-
Confidence 568999999999999997654 36777888899999999999988762 1 2334443321 12111 1111110
Q ss_pred CCccccCCCChhHHHHHHHHH--hcCCCeEEEEecCCCcc-c--cccccccccccccCCCCCEEEEEcCChh-HHhhh-c
Q 045686 231 IPDQMWIGKDEDGRANEILSN--LRGKKFVLLLDDVWERL-D--LSKVGVSDLLDDSSQTGSKIVFTTRSEE-VCGEM-G 303 (885)
Q Consensus 231 ~~~~~~~~~~~~~~~~~l~~~--l~~k~~LlVLDdv~~~~-~--~~~~~~~~~l~~~~~~gs~IivTTR~~~-v~~~~-~ 303 (885)
... ..+++-++|+||+.... . ...+...+. ....+.++|+||.... +...+ .
T Consensus 97 ------------------~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le---~~~~~~~iI~~~n~~~~l~~~l~s 155 (324)
T 3u61_B 97 ------------------ASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFME---AYSSNCSIIITANNIDGIIKPLQS 155 (324)
T ss_dssp ------------------HHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHH---HHGGGCEEEEEESSGGGSCTTHHH
T ss_pred ------------------HhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHH---hCCCCcEEEEEeCCccccCHHHHh
Confidence 000 12367899999997653 1 111111111 2223567888876643 11111 1
Q ss_pred ccceeeccCCChHHHHHHH-------HHHhcCcccCCccchHHHHHHHHHHhCCchhHHH
Q 045686 304 ARRRFRVECLSPEAALDLF-------RYKVGEDVYSSHFEISNLAQTVVEECRGLPLALV 356 (885)
Q Consensus 304 ~~~~~~l~~L~~~~~~~Lf-------~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~ 356 (885)
....+.+.+++.++-.+++ .+.+.......++ .+....|++.++|.+..+.
T Consensus 156 R~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~--~~~~~~l~~~~~gd~R~a~ 213 (324)
T 3u61_B 156 RCRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIAD--MKVVAALVKKNFPDFRKTI 213 (324)
T ss_dssp HSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSC--HHHHHHHHHHTCSCTTHHH
T ss_pred hCcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCc--HHHHHHHHHhCCCCHHHHH
Confidence 1246899999988854433 2223222222211 1457788898988776544
No 187
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.07 E-value=4.7e-05 Score=81.94 Aligned_cols=182 Identities=13% Similarity=0.146 Sum_probs=101.4
Q ss_pred CCccchhHHHHHHHHHhh------------cCCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHH
Q 045686 152 GKTVGLDSIISEVWRCIE------------DHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLE 219 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~------------~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 219 (885)
.+++|.+..++.|.+.+. ....+.|.|+|++|+|||++|+.+++... .. .+.++++.-..
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~---~~---~~~i~~~~l~~-- 155 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSG---AT---FFSISASSLTS-- 155 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTT---CE---EEEEEGGGGCC--
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcC---Ce---EEEEehHHhhc--
Confidence 468999999999988773 23457889999999999999999988762 22 23344332110
Q ss_pred HHHHHHHHHcCCCccccCCCChhHHHHHHH-HHhcCCCeEEEEecCCCccc-------------ccccccccc-ccccCC
Q 045686 220 KIQESILRRFEIPDQMWIGKDEDGRANEIL-SNLRGKKFVLLLDDVWERLD-------------LSKVGVSDL-LDDSSQ 284 (885)
Q Consensus 220 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~-~~l~~k~~LlVLDdv~~~~~-------------~~~~~~~~~-l~~~~~ 284 (885)
. +.+ ........+. ..-..++.+|+|||++.... ...+...+. ......
T Consensus 156 ------------~---~~g-~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~ 219 (357)
T 3d8b_A 156 ------------K---WVG-EGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSE 219 (357)
T ss_dssp ------------S---STT-HHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CC
T ss_pred ------------c---ccc-hHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCC
Confidence 0 001 1112222222 22345678999999953210 001110000 000112
Q ss_pred CCCEEEEEcCChh-HHhhh--cccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCC-chhHHHHHHH
Q 045686 285 TGSKIVFTTRSEE-VCGEM--GARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRG-LPLALVTIGH 360 (885)
Q Consensus 285 ~gs~IivTTR~~~-v~~~~--~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G-lPLai~~~~~ 360 (885)
.+..||.||.... +...+ .....+.+...+.++..+++...+........ .+....|++.+.| .+-.|..+..
T Consensus 220 ~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~---~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 220 DRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLS---EEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp CCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCC---HHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCcc---HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 2345555665432 21111 22346788889999999999887743322111 2357788999988 4555655443
No 188
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.04 E-value=2.6e-06 Score=91.58 Aligned_cols=15 Identities=13% Similarity=-0.088 Sum_probs=10.5
Q ss_pred hhcCCcccEEecCCC
Q 045686 559 FDSMDALEVLDLSYN 573 (885)
Q Consensus 559 ~~~l~~L~~L~Ls~~ 573 (885)
...+++|+.|.+.+.
T Consensus 135 ~~~l~~L~~L~l~~~ 149 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDI 149 (362)
T ss_dssp HHHHTTCSEEEECCC
T ss_pred hhhcchhhheeecCc
Confidence 456678888887654
No 189
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.03 E-value=4.5e-06 Score=80.80 Aligned_cols=47 Identities=26% Similarity=0.332 Sum_probs=42.0
Q ss_pred CCccchhHHHHHHHHHhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 045686 152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 198 (885)
..++||+.+++.+.+.+.......+.|+|++|+||||+|+.+++...
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 56899999999999999877677889999999999999999998763
No 190
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.02 E-value=0.00011 Score=78.75 Aligned_cols=175 Identities=13% Similarity=0.122 Sum_probs=99.8
Q ss_pred CCccchhHHHHHHHHHhhc-----CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHH
Q 045686 152 GKTVGLDSIISEVWRCIED-----HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESIL 226 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~-----~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~ 226 (885)
.+++|++..++.+..++.. .....|.|+|++|+|||++|+.+++... ..| +.++......... ...++
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~---~~~---~~~~~~~~~~~~~-~~~~~ 101 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMS---ANI---KTTAAPMIEKSGD-LAAIL 101 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTT---CCE---EEEEGGGCCSHHH-HHHHH
T ss_pred HHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhC---CCe---EEecchhccchhH-HHHHH
Confidence 5689999999999988853 3456789999999999999999988762 332 2222221111111 11111
Q ss_pred HHcCCCccccCCCChhHHHHHHHHHhcCCCeEEEEecCCCccc--c-------ccccccccc------c--ccCCCCCEE
Q 045686 227 RRFEIPDQMWIGKDEDGRANEILSNLRGKKFVLLLDDVWERLD--L-------SKVGVSDLL------D--DSSQTGSKI 289 (885)
Q Consensus 227 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~--~-------~~~~~~~~l------~--~~~~~gs~I 289 (885)
.. ..+.-+|++|++..... . +........ . ....++..+
T Consensus 102 ~~------------------------~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (338)
T 3pfi_A 102 TN------------------------LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTL 157 (338)
T ss_dssp HT------------------------CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEE
T ss_pred Hh------------------------ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEE
Confidence 11 13456778888764310 0 000000000 0 001113566
Q ss_pred EEEcCChhH-Hhhh--cccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCchhHHHHHHH
Q 045686 290 VFTTRSEEV-CGEM--GARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPLALVTIGH 360 (885)
Q Consensus 290 ivTTR~~~v-~~~~--~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~ 360 (885)
|.+|..... ...+ .....+.+.+++.++...++.+.+.......+ .+..+.|++.++|.|-.+..+..
T Consensus 158 i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~---~~~~~~l~~~~~G~~r~l~~~l~ 228 (338)
T 3pfi_A 158 IGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCE---EKAALEIAKRSRSTPRIALRLLK 228 (338)
T ss_dssp EEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCEEC---HHHHHHHHHTTTTCHHHHHHHHH
T ss_pred EEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHCcCHHHHHHHHH
Confidence 666654322 1111 12357899999999999999887753322112 34578888999999966554443
No 191
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.02 E-value=6.3e-05 Score=80.80 Aligned_cols=180 Identities=17% Similarity=0.151 Sum_probs=100.1
Q ss_pred CCccchhHHHHHHHHHhhc------------CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHH
Q 045686 152 GKTVGLDSIISEVWRCIED------------HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLE 219 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~------------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 219 (885)
.+++|.+..++.|.+.+.. ...+-|.|+|++|+|||+||+.+++... ..| +.+..+
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~---~~~---~~v~~~------ 118 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN---STF---FSVSSS------ 118 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHT---CEE---EEEEHH------
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC---CCE---EEeeHH------
Confidence 4689999999999887721 2234588999999999999999998872 222 222221
Q ss_pred HHHHHHHHHcCCCccccCCCChhHHHHHHHHHhcCCCeEEEEecCCCcccc-------------ccccccccccccCCCC
Q 045686 220 KIQESILRRFEIPDQMWIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDL-------------SKVGVSDLLDDSSQTG 286 (885)
Q Consensus 220 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~-------------~~~~~~~~l~~~~~~g 286 (885)
.+. ... .+.........+...-..++.+|++|+++....- ..+...+.-......+
T Consensus 119 ~l~----~~~-------~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 187 (355)
T 2qp9_X 119 DLV----SKW-------MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQG 187 (355)
T ss_dssp HHH----SCC----------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CC
T ss_pred HHh----hhh-------cchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCC
Confidence 111 100 1112222222222333457889999999753210 0110000000011234
Q ss_pred CEEEEEcCChh-----HHhhhcccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCc-hhHHHHHH
Q 045686 287 SKIVFTTRSEE-----VCGEMGARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGL-PLALVTIG 359 (885)
Q Consensus 287 s~IivTTR~~~-----v~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~Gl-PLai~~~~ 359 (885)
..||.||...+ +.. .....+.+...+.++-.+++...+.......+ ......|++.+.|. +-.|..+.
T Consensus 188 v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~---~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 188 VLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLT---KEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp EEEEEEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCC---HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred eEEEeecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCC---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 45555665442 222 23356788999999999999988754322111 23467888999884 44455444
No 192
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.02 E-value=0.00016 Score=75.76 Aligned_cols=179 Identities=13% Similarity=0.092 Sum_probs=100.8
Q ss_pred CCccchhHHHHHHHHHhhc------------CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHH
Q 045686 152 GKTVGLDSIISEVWRCIED------------HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLE 219 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~------------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 219 (885)
.+++|.+..++.+.+.+.. .....+.|+|++|+||||+|+.+++... ..| +.+..+.-..
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~---~~~---~~i~~~~l~~-- 92 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECS---ATF---LNISAASLTS-- 92 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTT---CEE---EEEESTTTSS--
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhC---CCe---EEeeHHHHhh--
Confidence 4689999999999887732 2457889999999999999999998762 222 2333322110
Q ss_pred HHHHHHHHHcCCCccccCCCChhHHHHH-HHHHhcCCCeEEEEecCCCccccc---------c----ccccc-cccc-cC
Q 045686 220 KIQESILRRFEIPDQMWIGKDEDGRANE-ILSNLRGKKFVLLLDDVWERLDLS---------K----VGVSD-LLDD-SS 283 (885)
Q Consensus 220 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~-l~~~l~~k~~LlVLDdv~~~~~~~---------~----~~~~~-~l~~-~~ 283 (885)
. ........... +......++-+|++|++.....-. . +...+ ..+. ..
T Consensus 93 ------------~----~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 156 (297)
T 3b9p_A 93 ------------K----YVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPD 156 (297)
T ss_dssp ------------S----SCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC----
T ss_pred ------------c----ccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCC
Confidence 0 01112222222 223334577899999996542110 0 00000 0000 01
Q ss_pred CCCCEEEEEcCChh-----HHhhhcccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCchh-HHHH
Q 045686 284 QTGSKIVFTTRSEE-----VCGEMGARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPL-ALVT 357 (885)
Q Consensus 284 ~~gs~IivTTR~~~-----v~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPL-ai~~ 357 (885)
+.+..||.||...+ +... ....+.+...+.++-..++...+.......+ .+....|++.+.|.+- ++..
T Consensus 157 ~~~v~vi~~tn~~~~l~~~l~~R--~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~---~~~~~~la~~~~g~~~~~l~~ 231 (297)
T 3b9p_A 157 GDRIVVLAATNRPQELDEAALRR--FTKRVYVSLPDEQTRELLLNRLLQKQGSPLD---TEALRRLAKITDGYSGSDLTA 231 (297)
T ss_dssp --CEEEEEEESCGGGBCHHHHHH--CCEEEECCCCCHHHHHHHHHHHHGGGSCCSC---HHHHHHHHHHTTTCCHHHHHH
T ss_pred CCcEEEEeecCChhhCCHHHHhh--CCeEEEeCCcCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHcCCCCHHHHHH
Confidence 12345666776542 2222 2346777888888888888877643321111 2346788999999875 4544
Q ss_pred HH
Q 045686 358 IG 359 (885)
Q Consensus 358 ~~ 359 (885)
+.
T Consensus 232 l~ 233 (297)
T 3b9p_A 232 LA 233 (297)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 193
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.02 E-value=4.1e-05 Score=81.26 Aligned_cols=181 Identities=15% Similarity=0.180 Sum_probs=101.5
Q ss_pred CCccchhHHHHHHHHHhh------------cCCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHH
Q 045686 152 GKTVGLDSIISEVWRCIE------------DHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLE 219 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~------------~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 219 (885)
.+++|.+..++.|.+.+. ....+-+.++|++|+|||+||+.+++... ..| +.++. .
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~---~~~---~~v~~------~ 85 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN---STF---FSVSS------S 85 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHT---CEE---EEEEH------H
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHC---CCE---EEEch------H
Confidence 468999999999988872 12345789999999999999999998762 322 22222 1
Q ss_pred HHHHHHHHHcCCCccccCCCChhHHHHHHH-HHhcCCCeEEEEecCCCcccc-------------ccccccccccccCCC
Q 045686 220 KIQESILRRFEIPDQMWIGKDEDGRANEIL-SNLRGKKFVLLLDDVWERLDL-------------SKVGVSDLLDDSSQT 285 (885)
Q Consensus 220 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~-~~l~~k~~LlVLDdv~~~~~~-------------~~~~~~~~l~~~~~~ 285 (885)
.+. ... .+ ..+.....+. ..-..++.+|++||++....- ..+...+.-......
T Consensus 86 ~l~----~~~-------~g-~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 153 (322)
T 3eie_A 86 DLV----SKW-------MG-ESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQ 153 (322)
T ss_dssp HHH----TTT-------GG-GHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCC
T ss_pred HHh----hcc-------cc-hHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCC
Confidence 111 000 11 1122222222 233456789999999743210 011000000001223
Q ss_pred CCEEEEEcCChhHHh-hh--cccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCc-hhHHHHHH
Q 045686 286 GSKIVFTTRSEEVCG-EM--GARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGL-PLALVTIG 359 (885)
Q Consensus 286 gs~IivTTR~~~v~~-~~--~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~Gl-PLai~~~~ 359 (885)
+..||.||...+... .+ .....+.+...+.++-.+++...+.......+ ......|++.+.|. +-.|..+.
T Consensus 154 ~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~---~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 154 GVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLT---KEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp CEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCC---HHHHHHHHHTTTTCCHHHHHHHH
T ss_pred ceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCC---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 455555776533211 00 23356788889999999999988865432211 23467888998874 44454443
No 194
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.00 E-value=7.3e-06 Score=78.93 Aligned_cols=120 Identities=15% Similarity=0.159 Sum_probs=64.2
Q ss_pred hhHHHHHHHHHhhc---CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHHHcCCCc
Q 045686 157 LDSIISEVWRCIED---HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILRRFEIPD 233 (885)
Q Consensus 157 r~~~~~~l~~~L~~---~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~ 233 (885)
++..++.+.+++.+ .....+.|+|++|+||||||+.+++......+ +. ++++ +..++...+........
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g-~~-~~~~------~~~~~~~~~~~~~~~~~ 90 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKG-IR-GYFF------DTKDLIFRLKHLMDEGK 90 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSC-CC-CCEE------EHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcC-Ce-EEEE------EHHHHHHHHHHHhcCch
Confidence 44455555555533 45689999999999999999999988742212 11 2333 33444444443332110
Q ss_pred cccCCCChhHHHHHHHHHhcCCCeEEEEecCCC-ccc-cccccccccccccCCCCCEEEEEcCCh
Q 045686 234 QMWIGKDEDGRANEILSNLRGKKFVLLLDDVWE-RLD-LSKVGVSDLLDDSSQTGSKIVFTTRSE 296 (885)
Q Consensus 234 ~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~-~~~-~~~~~~~~~l~~~~~~gs~IivTTR~~ 296 (885)
..... +.+. +.-+|||||++. ..+ +........+......|..||+||...
T Consensus 91 -------~~~~~----~~~~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 91 -------DTKFL----KTVL-NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp -------CSHHH----HHHH-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred -------HHHHH----HHhc-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 11112 2222 567999999974 222 221111101111223578899999764
No 195
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.99 E-value=1.6e-06 Score=88.10 Aligned_cols=80 Identities=25% Similarity=0.342 Sum_probs=42.7
Q ss_pred hcCCcccEEecCCCCCCCcC---chhhhcccccceeeccCCcccccChhhhccc--cccEeecCCcccccccCC------
Q 045686 560 DSMDALEVLDLSYNLDLNQL---PEEIGRLKNLHHLNLSNTSIGCLPTAIKRLI--KLKVLLLDGIQCHLSIPE------ 628 (885)
Q Consensus 560 ~~l~~L~~L~Ls~~~~i~~l---p~~i~~L~~L~~L~Ls~~~i~~lp~~i~~L~--~L~~L~l~~~~~l~~lp~------ 628 (885)
.+++.|++|+|++| .+..+ |..++.+++|++|+|++|+|..+. .+..+. +|++|+|++|.....+|.
T Consensus 167 ~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 34566666666666 45443 244556666666666666665552 334444 666666666653333331
Q ss_pred cccccCcccceec
Q 045686 629 GVISSLSSLQVFS 641 (885)
Q Consensus 629 ~~i~~L~~L~~L~ 641 (885)
.++..+++|+.|+
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 1244555555554
No 196
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.97 E-value=0.00012 Score=79.82 Aligned_cols=182 Identities=13% Similarity=0.090 Sum_probs=99.1
Q ss_pred CCccchhHHHHHHHHHhhc------------CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHH
Q 045686 152 GKTVGLDSIISEVWRCIED------------HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLE 219 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~------------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 219 (885)
.+++|.+..++.|.+++.. ...+-+.|+|++|+|||++|+.+++... .. .+.++++.-..
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~---~~---~~~v~~~~l~~-- 186 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESN---AT---FFNISAASLTS-- 186 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTT---CE---EEEECSCCC----
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhc---Cc---EEEeeHHHhhc--
Confidence 5689999999999988721 2356889999999999999999988752 22 22333222111
Q ss_pred HHHHHHHHHcCCCccccCCCChhHHHHHHHHHhcCCCeEEEEecCCCccc---------cc----ccccccc-ccccCCC
Q 045686 220 KIQESILRRFEIPDQMWIGKDEDGRANEILSNLRGKKFVLLLDDVWERLD---------LS----KVGVSDL-LDDSSQT 285 (885)
Q Consensus 220 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~---------~~----~~~~~~~-l~~~~~~ 285 (885)
. +.+.........+...-..++-+|+|||++.... .. .+...+. .......
T Consensus 187 ~---------------~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 251 (389)
T 3vfd_A 187 K---------------YVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDD 251 (389)
T ss_dssp --------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----
T ss_pred c---------------ccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCC
Confidence 0 0111112222222222334667999999964310 00 0000000 0000122
Q ss_pred CCEEEEEcCChh-HHhhh--cccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCchh-HHHHHH
Q 045686 286 GSKIVFTTRSEE-VCGEM--GARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPL-ALVTIG 359 (885)
Q Consensus 286 gs~IivTTR~~~-v~~~~--~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPL-ai~~~~ 359 (885)
...||.||...+ +...+ .....+.+...+.++-.+++...+........ .+....|++.+.|..- +|..+.
T Consensus 252 ~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~---~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 252 RVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLT---QKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSC---HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 344555665432 21111 12245788889999999999888754332221 2356788999988654 554443
No 197
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.96 E-value=3.1e-06 Score=79.55 Aligned_cols=66 Identities=18% Similarity=0.321 Sum_probs=46.2
Q ss_pred ccccccEEeeccccCCcc--ccccccC----CCccEEeEeccCCchhhhcccccCCCcccccccccceecccccccccc
Q 045686 742 SFSALRRLSIILCPDIQN--LTCLVHV----PSLQFLSLSNCHSLEEIVGTYASGSSESRNYFSNLMAVDLDGLPTLRS 814 (885)
Q Consensus 742 ~l~~L~~L~L~~c~~l~~--l~~l~~l----~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 814 (885)
.+++|++|+|++|..+++ +..++.+ ++|++|+|++|..+++... ..+..+++|++|+|++|+.++.
T Consensus 83 ~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl-------~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 83 GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI-------IALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH-------HHGGGCTTCCEEEEESCTTCCC
T ss_pred CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH-------HHHhcCCCCCEEECCCCCCCCc
Confidence 377888888888877766 3344443 4688888888877776533 2455678888888888877764
No 198
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.92 E-value=0.00024 Score=78.72 Aligned_cols=183 Identities=15% Similarity=0.149 Sum_probs=100.1
Q ss_pred CCccchhHHHHHHHHHhh------------cCCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHH
Q 045686 152 GKTVGLDSIISEVWRCIE------------DHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLE 219 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~------------~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 219 (885)
.+++|.+..++.|.+.+. ....+-|.++|++|+|||+||+.+++... ... ++.++...
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~--~~~-----~~~v~~~~--- 203 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN--NST-----FFSISSSD--- 203 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCC--SSE-----EEEECCC----
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcC--CCC-----EEEEeHHH---
Confidence 568899999999988762 12446789999999999999999998762 111 23332211
Q ss_pred HHHHHHHHHcCCCccccCCCChhHHHHHHHHHhcCCCeEEEEecCCCcccc---------ccccccc--cccc--cCCCC
Q 045686 220 KIQESILRRFEIPDQMWIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDL---------SKVGVSD--LLDD--SSQTG 286 (885)
Q Consensus 220 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~---------~~~~~~~--~l~~--~~~~g 286 (885)
+.... .|. ...... ..+...-..++.+|++|+++....- ..+...+ .+.. ....+
T Consensus 204 -l~~~~---~g~-----~~~~~~---~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~ 271 (444)
T 2zan_A 204 -LVSKW---LGE-----SEKLVK---NLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDG 271 (444)
T ss_dssp -----------------CCCTHH---HHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSS
T ss_pred -HHhhh---cch-----HHHHHH---HHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCC
Confidence 11000 111 111111 1222223457889999999753110 0000000 0000 01335
Q ss_pred CEEEEEcCChhHHh-hh--cccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCc-hhHHHHHH
Q 045686 287 SKIVFTTRSEEVCG-EM--GARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGL-PLALVTIG 359 (885)
Q Consensus 287 s~IivTTR~~~v~~-~~--~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~Gl-PLai~~~~ 359 (885)
..||.||....... .+ .....+.+...+.++-..+|...+.......+ ......|++.+.|. +-.|..+.
T Consensus 272 v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~---~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 272 ILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLT---EADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp CEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECC---HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCC---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 56666776543211 10 22356788888999999999888754322111 23467888999884 44454443
No 199
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.90 E-value=3.6e-05 Score=82.51 Aligned_cols=173 Identities=16% Similarity=0.207 Sum_probs=100.0
Q ss_pred CCccchhHHHHHHHHHhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCcc-EEEEEEEcCcccHHHHHHHHHHHcC
Q 045686 152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFD-LVIWVKVSRDANLEKIQESILRRFE 230 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~-~~~wv~v~~~~~~~~~~~~i~~~l~ 230 (885)
.+++|.+..++.|...+..+..+.+.++|++|+||||+|+.+++.... ..+. .+..++.+.....
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~--~~~~~~~~~~~~~~~~~~------------ 90 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG--KNYSNMVLELNASDDRGI------------ 90 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT--TSHHHHEEEECTTSCCSH------------
T ss_pred HHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcC--CCccceEEEEcCcccccH------------
Confidence 457899999999988887765555899999999999999999987642 2221 1222222221111
Q ss_pred CCccccCCCChhHHHHHHHHH------hcCCCeEEEEecCCCcc--ccccccccccccccCCCCCEEEEEcCChh-HHhh
Q 045686 231 IPDQMWIGKDEDGRANEILSN------LRGKKFVLLLDDVWERL--DLSKVGVSDLLDDSSQTGSKIVFTTRSEE-VCGE 301 (885)
Q Consensus 231 ~~~~~~~~~~~~~~~~~l~~~------l~~k~~LlVLDdv~~~~--~~~~~~~~~~l~~~~~~gs~IivTTR~~~-v~~~ 301 (885)
+.....+... +.+.+-++|+|++.... ....+...+. .....+.+|++|.... +...
T Consensus 91 -----------~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le---~~~~~~~~il~~n~~~~i~~~ 156 (340)
T 1sxj_C 91 -----------DVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIE---RYTKNTRFCVLANYAHKLTPA 156 (340)
T ss_dssp -----------HHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHH---HTTTTEEEEEEESCGGGSCHH
T ss_pred -----------HHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHh---cCCCCeEEEEEecCccccchh
Confidence 1111111111 12346789999986432 1111111111 2233556777665432 1111
Q ss_pred -hcccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCchhHH
Q 045686 302 -MGARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPLAL 355 (885)
Q Consensus 302 -~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai 355 (885)
......+.+.+++.++..+.+.+.+.......+ .+..+.|++.++|.+--+
T Consensus 157 i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~~~i~---~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 157 LLSQCTRFRFQPLPQEAIERRIANVLVHEKLKLS---PNAEKALIELSNGDMRRV 208 (340)
T ss_dssp HHTTSEEEECCCCCHHHHHHHHHHHHHTTTCCBC---HHHHHHHHHHHTTCHHHH
T ss_pred HHhhceeEeccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 112246889999999999988877743322222 234678888888877643
No 200
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.85 E-value=0.0001 Score=80.80 Aligned_cols=122 Identities=9% Similarity=0.135 Sum_probs=75.9
Q ss_pred ceEEEecccCcccccccccCCCCchhHHHHHhhc---CCccCCCCchhhhcCCcccEEecCCCCCCCcCc-hhhhccccc
Q 045686 514 EAVRLSLWGSSIDFLALVEAPSCPQVRTLLARLT---MLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLP-EEIGRLKNL 589 (885)
Q Consensus 514 ~~~~l~l~~~~i~~~~~~~~~~~~~Lr~L~l~~~---~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp-~~i~~L~~L 589 (885)
.++.+.+.. .++...-..+.+|++|+.+.+..+ .++. +....|.++..|+.+.+..+ ++.++ ..+..+.+|
T Consensus 65 ~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~--Ig~~aF~~c~~L~~i~~~~~--~~~I~~~aF~~c~~L 139 (394)
T 4gt6_A 65 VLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKK--IGRQAFMFCSELTDIPILDS--VTEIDSEAFHHCEEL 139 (394)
T ss_dssp CCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCE--ECTTTTTTCTTCCBCGGGTT--CSEECTTTTTTCTTC
T ss_pred cCEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeE--echhhchhcccceeeccCCc--cceehhhhhhhhccc
Confidence 366666653 355444456777888888877765 3555 66677777888877777654 33333 345677778
Q ss_pred ceeeccCCcccccChh-hhccccccEeecCCcccccccCCcccccCcccceecccc
Q 045686 590 HHLNLSNTSIGCLPTA-IKRLIKLKVLLLDGIQCHLSIPEGVISSLSSLQVFSCFS 644 (885)
Q Consensus 590 ~~L~Ls~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~ 644 (885)
+.+.+..+ +..++.. +..+.+|+.+.+..+ +..+....+.. .+|+.+.+..
T Consensus 140 ~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~-~~l~~i~ip~ 191 (394)
T 4gt6_A 140 DTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTG-TALTQIHIPA 191 (394)
T ss_dssp CEEECCTT-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTT-CCCSEEEECT
T ss_pred ccccccce-eeeecccceecccccccccccce--eeEeccccccc-cceeEEEECC
Confidence 88777643 3444433 666777777777664 55566554433 4566665543
No 201
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.82 E-value=0.00018 Score=76.57 Aligned_cols=168 Identities=13% Similarity=0.072 Sum_probs=97.2
Q ss_pred hhHHHHHHHHHhhcCCC-eEEEEEcCCCCcHHHHHHHHHhhhccCCC-------------------CccEEEEEEEcCcc
Q 045686 157 LDSIISEVWRCIEDHNE-KVIGLYGMGGVGKTTLLKKLNNKFRDTGH-------------------DFDLVIWVKVSRDA 216 (885)
Q Consensus 157 r~~~~~~l~~~L~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~~~~~-------------------~f~~~~wv~v~~~~ 216 (885)
.++..+.+.+.+..++. ..+.++|+.|+||||+|+.+++....... +++ ..++....
T Consensus 7 ~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~-- 83 (334)
T 1a5t_A 7 LRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAPEK-- 83 (334)
T ss_dssp GHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECCCT--
T ss_pred hHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccc--
Confidence 35566777777766554 57899999999999999999887632110 112 11221110
Q ss_pred cHHHHHHHHHHHcCCCccccCCCChhHHHHHHHHHh-----cCCCeEEEEecCCCccc--cccccccccccccCCCCCEE
Q 045686 217 NLEKIQESILRRFEIPDQMWIGKDEDGRANEILSNL-----RGKKFVLLLDDVWERLD--LSKVGVSDLLDDSSQTGSKI 289 (885)
Q Consensus 217 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVLDdv~~~~~--~~~~~~~~~l~~~~~~gs~I 289 (885)
.......++ ...+.+.+ .+++-++|+|+++.... ...+...+- ....++.+
T Consensus 84 ------------------~~~~~~i~~-ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lE---ep~~~~~~ 141 (334)
T 1a5t_A 84 ------------------GKNTLGVDA-VREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLE---EPPAETWF 141 (334)
T ss_dssp ------------------TCSSBCHHH-HHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHT---SCCTTEEE
T ss_pred ------------------cCCCCCHHH-HHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhc---CCCCCeEE
Confidence 000111222 22233332 24678999999975421 111211111 23345677
Q ss_pred EEEcCChh-HHhh-hcccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCchhHHHH
Q 045686 290 VFTTRSEE-VCGE-MGARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPLALVT 357 (885)
Q Consensus 290 ivTTR~~~-v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~ 357 (885)
|++|.+.+ +... ......+.+.++++++..+.+.+... .+ .+.+..+++.++|.|..+..
T Consensus 142 Il~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~~-----~~---~~~~~~l~~~s~G~~r~a~~ 203 (334)
T 1a5t_A 142 FLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREVT-----MS---QDALLAALRLSAGSPGAALA 203 (334)
T ss_dssp EEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHCC-----CC---HHHHHHHHHHTTTCHHHHHH
T ss_pred EEEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhcC-----CC---HHHHHHHHHHcCCCHHHHHH
Confidence 77766543 2221 12235789999999999999987761 11 23467899999999976654
No 202
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.82 E-value=0.0005 Score=73.43 Aligned_cols=174 Identities=20% Similarity=0.220 Sum_probs=99.0
Q ss_pred CCccchhHHHHHHHHHhh-------------cCCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccH
Q 045686 152 GKTVGLDSIISEVWRCIE-------------DHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANL 218 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~-------------~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 218 (885)
.++.|.++.+++|.+.+. -...+-|.++|++|+|||.||+.+++... ..| +.+..+.-.+
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~---~~f---~~v~~s~l~s- 220 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTD---CKF---IRVSGAELVQ- 220 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHT---CEE---EEEEGGGGSC-
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhC---CCc---eEEEhHHhhc-
Confidence 356789998888887662 13456688999999999999999999873 332 2333222110
Q ss_pred HHHHHHHHHHcCCCccccCCCChhHHHHHHHHHhcCCCeEEEEecCCCcccc----c-----c---cccccc--ccc-cC
Q 045686 219 EKIQESILRRFEIPDQMWIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDL----S-----K---VGVSDL--LDD-SS 283 (885)
Q Consensus 219 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~----~-----~---~~~~~~--l~~-~~ 283 (885)
.+.+.+...+.......-...+.+|++|+++....- . . ....+. +.. ..
T Consensus 221 ----------------k~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 284 (405)
T 4b4t_J 221 ----------------KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFET 284 (405)
T ss_dssp ----------------SSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTC
T ss_pred ----------------cccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCC
Confidence 001111222222222333467899999999753110 0 0 000000 000 12
Q ss_pred CCCCEEEEEcCChhH-----HhhhcccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCch
Q 045686 284 QTGSKIVFTTRSEEV-----CGEMGARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLP 352 (885)
Q Consensus 284 ~~gs~IivTTR~~~v-----~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP 352 (885)
..+..||.||...+. ...-.-...+.++..+.++-.++|+.+........+.+ ...|++.+.|.-
T Consensus 285 ~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvd----l~~lA~~t~G~S 354 (405)
T 4b4t_J 285 SKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGIN----LRKVAEKMNGCS 354 (405)
T ss_dssp CCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCC----HHHHHHHCCSCC
T ss_pred CCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHCCCCC
Confidence 234455666654432 22123456789999999999999988775543333334 466778888755
No 203
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.79 E-value=3.9e-05 Score=82.29 Aligned_cols=60 Identities=13% Similarity=0.181 Sum_probs=31.7
Q ss_pred hccceEEeeccCccceeecCCCCCccccccccEEeeccccCCccc--ccccc-CCCccEEeEeccC
Q 045686 716 SHLEILRIKCGFMKRLNIDQGLNNRPSFSALRRLSIILCPDIQNL--TCLVH-VPSLQFLSLSNCH 778 (885)
Q Consensus 716 ~~L~~L~l~~~~l~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~l--~~l~~-l~~L~~L~L~~~~ 778 (885)
++|++|+|++|.+..............+++|+.|+|++| .+++- ..+.. + ...++++++.
T Consensus 279 ~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n-~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 279 PQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN-YLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp GGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSB-BCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred CCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCC-cCCHHHHHHHHHHc--CCEEEecCCc
Confidence 667777776666654321111111134678888888877 45542 12222 2 3456776654
No 204
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.78 E-value=4.2e-05 Score=75.09 Aligned_cols=124 Identities=20% Similarity=0.181 Sum_probs=64.6
Q ss_pred CCccchh----HHHHHHHHHhhcC----CCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHH
Q 045686 152 GKTVGLD----SIISEVWRCIEDH----NEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQE 223 (885)
Q Consensus 152 ~~~vgr~----~~~~~l~~~L~~~----~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~ 223 (885)
+.|++.. ..++.+.+++... ....+.|+|++|+||||||+.+++.... . ...++|+++ ..+..
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~--~-~~~~~~~~~------~~~~~ 95 (202)
T 2w58_A 25 SDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAK--R-NVSSLIVYV------PELFR 95 (202)
T ss_dssp TSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHT--T-TCCEEEEEH------HHHHH
T ss_pred hhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHH--c-CCeEEEEEh------HHHHH
Confidence 4466543 3445555555432 1278899999999999999999988742 2 223555544 23444
Q ss_pred HHHHHcCCCccccCCCChhHHHHHHHHHhcCCCeEEEEecCCCc--cccccccccc-cccccCCCCCEEEEEcCCh
Q 045686 224 SILRRFEIPDQMWIGKDEDGRANEILSNLRGKKFVLLLDDVWER--LDLSKVGVSD-LLDDSSQTGSKIVFTTRSE 296 (885)
Q Consensus 224 ~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~--~~~~~~~~~~-~l~~~~~~gs~IivTTR~~ 296 (885)
.+..... .......... +.. .-+|||||++.. .+|....... .+......+.++|+||...
T Consensus 96 ~~~~~~~-------~~~~~~~~~~----~~~-~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~ 159 (202)
T 2w58_A 96 ELKHSLQ-------DQTMNEKLDY----IKK-VPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFD 159 (202)
T ss_dssp HHHHC----------CCCHHHHHH----HHH-SSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSC
T ss_pred HHHHHhc-------cchHHHHHHH----hcC-CCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCC
Confidence 4433221 1112222222 222 249999999653 3332221111 1111112456788888753
No 205
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.78 E-value=0.00023 Score=79.39 Aligned_cols=149 Identities=16% Similarity=0.189 Sum_probs=82.2
Q ss_pred CCccchhHHHHHHHHHhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhccCC--CCc-c-EEEEEEEcCcccHHHHHHHHHH
Q 045686 152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTG--HDF-D-LVIWVKVSRDANLEKIQESILR 227 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~--~~f-~-~~~wv~v~~~~~~~~~~~~i~~ 227 (885)
.++|||+++++.+...+......-+.++|++|+|||++|+.++....... ... . .++.+.++ .
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~-------------~ 246 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG-------------T 246 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------------
T ss_pred CCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC-------------c
Confidence 46899999999999999776666778999999999999999998863110 000 1 12222222 0
Q ss_pred HcCCCccccCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccccccccCCCCCEEEEEcCChhHHh------h
Q 045686 228 RFEIPDQMWIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSDLLDDSSQTGSKIVFTTRSEEVCG------E 301 (885)
Q Consensus 228 ~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~~l~~~~~~gs~IivTTR~~~v~~------~ 301 (885)
.. .+.........+...-..++.+|++| . ..+......+. ......++|.+|...+... .
T Consensus 247 ~~-------~g~~e~~~~~~~~~~~~~~~~iLfiD--~-~~~a~~~L~~~----L~~g~v~vI~at~~~e~~~~~~~~~a 312 (468)
T 3pxg_A 247 KY-------RGEFEDRLKKVMDEIRQAGNIILFID--A-AIDASNILKPS----LARGELQCIGATTLDEYRKYIEKDAA 312 (468)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEEC--C---------CCC----TTSSSCEEEEECCTTTTHHHHTTCSH
T ss_pred cc-------cchHHHHHHHHHHHHHhcCCeEEEEe--C-chhHHHHHHHh----hcCCCEEEEecCCHHHHHHHhhcCHH
Confidence 00 01101111222222333567899999 1 11111111111 1222456666665543111 0
Q ss_pred -hcccceeeccCCChHHHHHHHHHHhc
Q 045686 302 -MGARRRFRVECLSPEAALDLFRYKVG 327 (885)
Q Consensus 302 -~~~~~~~~l~~L~~~~~~~Lf~~~~~ 327 (885)
..-...+.++..+.++...++...+.
T Consensus 313 l~~Rf~~i~v~~p~~e~~~~iL~~~~~ 339 (468)
T 3pxg_A 313 LERRFQPIQVDQPSVDESIQILQGLRD 339 (468)
T ss_dssp HHHSEEEEECCCCCHHHHHHHHHHTTT
T ss_pred HHHhCccceeCCCCHHHHHHHHHHHHH
Confidence 11123689999999999999987664
No 206
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.76 E-value=1.3e-05 Score=74.06 Aligned_cols=33 Identities=21% Similarity=0.352 Sum_probs=27.1
Q ss_pred HHhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 045686 166 RCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (885)
Q Consensus 166 ~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 198 (885)
..+..-....++|+|++|+|||||++.+++...
T Consensus 29 ~~l~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 61 (149)
T 2kjq_A 29 YVLRHKHGQFIYVWGEEGAGKSHLLQAWVAQAL 61 (149)
T ss_dssp HHCCCCCCSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred HHHHhcCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 344333678999999999999999999999875
No 207
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.76 E-value=0.00026 Score=77.04 Aligned_cols=123 Identities=11% Similarity=0.109 Sum_probs=68.4
Q ss_pred cceEEEecccCcccccccccCCCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCchhhhccccccee
Q 045686 513 HEAVRLSLWGSSIDFLALVEAPSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLPEEIGRLKNLHHL 592 (885)
Q Consensus 513 ~~~~~l~l~~~~i~~~~~~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L 592 (885)
.+++.+.+.. .++...-..+.+|.+|+.+.+..+ ++. +....|.++ .|..+.+..+ ++.++.......+|+.+
T Consensus 46 ~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~--Ig~~aF~~c-~l~~i~~~~~--l~~I~~~aF~~~~L~~i 118 (379)
T 4h09_A 46 DRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTS--IGDGAFADT-KLQSYTGMER--VKKFGDYVFQGTDLDDF 118 (379)
T ss_dssp GGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCE--ECTTTTTTC-CCCEEEECTT--CCEECTTTTTTCCCSEE
T ss_pred cCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceE--echhhhcCC-CCceEECCce--eeEeccceeccCCcccc
Confidence 4566666653 344433455677777777777543 555 666667776 4555555433 44444433333467777
Q ss_pred eccCCcccccChhhhccccccEeecCCcccccccCCcccccCcccceeccccc
Q 045686 593 NLSNTSIGCLPTAIKRLIKLKVLLLDGIQCHLSIPEGVISSLSSLQVFSCFST 645 (885)
Q Consensus 593 ~Ls~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~ 645 (885)
.+..+ +..+....-.-.+|+.+.+..+ +..+....+..+.+|+.+.+..+
T Consensus 119 ~lp~~-~~~i~~~~F~~~~l~~~~~~~~--v~~i~~~~f~~~~~l~~~~~~~~ 168 (379)
T 4h09_A 119 EFPGA-TTEIGNYIFYNSSVKRIVIPKS--VTTIKDGIGYKAENLEKIEVSSN 168 (379)
T ss_dssp ECCTT-CCEECTTTTTTCCCCEEEECTT--CCEECSCTTTTCTTCCEEEECTT
T ss_pred cCCCc-cccccccccccceeeeeeccce--eeccccchhcccccccccccccc
Confidence 77654 3334333222235666655544 44555555666777776665543
No 208
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.74 E-value=0.00053 Score=74.55 Aligned_cols=174 Identities=19% Similarity=0.256 Sum_probs=98.7
Q ss_pred CCccchhHHHHHHHHHhhc-------------CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccH
Q 045686 152 GKTVGLDSIISEVWRCIED-------------HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANL 218 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~-------------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 218 (885)
.++.|.++.+++|.+.+.- ...+=|.++|++|+|||+||+.+++... ..| +.+..+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~---~~~---~~v~~s~l~s- 253 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIG---ANF---IFSPASGIVD- 253 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHT---CEE---EEEEGGGTCC-
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhC---CCE---EEEehhhhcc-
Confidence 4567899988888776621 3457788999999999999999999873 222 2333322110
Q ss_pred HHHHHHHHHHcCCCccccCCCChhHHHHHHHHHhcCCCeEEEEecCCCccc--------ccc-c---cccc--cccc-cC
Q 045686 219 EKIQESILRRFEIPDQMWIGKDEDGRANEILSNLRGKKFVLLLDDVWERLD--------LSK-V---GVSD--LLDD-SS 283 (885)
Q Consensus 219 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~--------~~~-~---~~~~--~l~~-~~ 283 (885)
.+.+.+...........-...+.+|++|+++.... ... . ...+ .+.. ..
T Consensus 254 ----------------k~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 317 (437)
T 4b4t_L 254 ----------------KYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDN 317 (437)
T ss_dssp ----------------SSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSC
T ss_pred ----------------ccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccC
Confidence 00111112222222233346789999999975311 000 0 0000 0000 12
Q ss_pred CCCCEEEEEcCChhHHh-----hhcccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCch
Q 045686 284 QTGSKIVFTTRSEEVCG-----EMGARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLP 352 (885)
Q Consensus 284 ~~gs~IivTTR~~~v~~-----~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP 352 (885)
..+..||.||...+... .-.-...+.++..+.++-.++|+.++.......+.+ ...|++.+.|.-
T Consensus 318 ~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~d----l~~lA~~t~G~s 387 (437)
T 4b4t_L 318 LGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFD----FEAAVKMSDGFN 387 (437)
T ss_dssp TTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCC----HHHHHHTCCSCC
T ss_pred CCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhCCCCC
Confidence 23456777776544321 111345788888888888899987775433333334 466778887754
No 209
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.73 E-value=6.3e-05 Score=77.53 Aligned_cols=175 Identities=15% Similarity=0.091 Sum_probs=90.2
Q ss_pred CCccchhHHHHHHHHHhhc------------CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHH
Q 045686 152 GKTVGLDSIISEVWRCIED------------HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLE 219 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~------------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 219 (885)
.+++|.++.++.+.+.+.. ...+-+.|+|++|+|||++|+.+++... ..|- .+..+.-.+.
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~---~~~~---~v~~~~~~~~- 83 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAH---VPFF---SMGGSSFIEM- 83 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHT---CCCC---CCCSCTTTTS-
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhC---CCEE---EechHHHHHh-
Confidence 5689998888877776531 1233477999999999999999998763 2221 1111110000
Q ss_pred HHHHHHHHHcCCCccccCCCChhHHHHHHHHHhcCCCeEEEEecCCCccc-----------------ccccccccccccc
Q 045686 220 KIQESILRRFEIPDQMWIGKDEDGRANEILSNLRGKKFVLLLDDVWERLD-----------------LSKVGVSDLLDDS 282 (885)
Q Consensus 220 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~-----------------~~~~~~~~~l~~~ 282 (885)
..+.. ...... .+......++.+|++||++.... ...+...+.-...
T Consensus 84 --------~~~~~-----~~~~~~---~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 147 (268)
T 2r62_A 84 --------FVGLG-----ASRVRD---LFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGS 147 (268)
T ss_dssp --------CSSSC-----SSSSST---THHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSC
T ss_pred --------hcchH-----HHHHHH---HHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCccc
Confidence 00110 011111 12222334678999999954311 1111111100000
Q ss_pred CCCCCEEEEEcCChhHHh-h-h---cccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCchh
Q 045686 283 SQTGSKIVFTTRSEEVCG-E-M---GARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPL 353 (885)
Q Consensus 283 ~~~gs~IivTTR~~~v~~-~-~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPL 353 (885)
......||.||...+... . . .....+.+...+.++-.+++...+.......+.. ...|++.+.|.|-
T Consensus 148 ~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~----~~~la~~~~g~~g 219 (268)
T 2r62_A 148 ENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVN----LQEVAKLTAGLAG 219 (268)
T ss_dssp SCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCC----TTTTTSSSCSSCH
T ss_pred CCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccC----HHHHHHHcCCCCH
Confidence 112245666666543211 1 1 1234678889999999999988774332222222 2345666777654
No 210
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.73 E-value=0.00075 Score=73.10 Aligned_cols=174 Identities=18% Similarity=0.188 Sum_probs=98.9
Q ss_pred CCccchhHHHHHHHHHhh-------------cCCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccH
Q 045686 152 GKTVGLDSIISEVWRCIE-------------DHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANL 218 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~-------------~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 218 (885)
.++.|.++.+++|.+.+. -...+-|.++|++|+|||+||+.+++... ..| +.+..+.-.+
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~---~~f---i~vs~s~L~s- 281 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTD---ATF---IRVIGSELVQ- 281 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHT---CEE---EEEEGGGGCC-
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccC---CCe---EEEEhHHhhc-
Confidence 356789998888887651 14567788999999999999999999873 322 2333221100
Q ss_pred HHHHHHHHHHcCCCccccCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccc---------cc---ccc-c-cccc-cC
Q 045686 219 EKIQESILRRFEIPDQMWIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLS---------KV---GVS-D-LLDD-SS 283 (885)
Q Consensus 219 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~---------~~---~~~-~-~l~~-~~ 283 (885)
. +.+.+...+.......-...+.+|++|+++....-. .. ... + .+.. ..
T Consensus 282 -------------k---~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 345 (467)
T 4b4t_H 282 -------------K---YVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDP 345 (467)
T ss_dssp -------------C---SSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCC
T ss_pred -------------c---cCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCC
Confidence 0 011112222222233334678999999997531100 00 000 0 0000 12
Q ss_pred CCCCEEEEEcCChhH-----HhhhcccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCch
Q 045686 284 QTGSKIVFTTRSEEV-----CGEMGARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLP 352 (885)
Q Consensus 284 ~~gs~IivTTR~~~v-----~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP 352 (885)
..+..||.||...+. ...-.-...+.++..+.++-.++|+.++.......+.+ ...|++.|.|.-
T Consensus 346 ~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvd----l~~LA~~T~GfS 415 (467)
T 4b4t_H 346 RGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIR----WELISRLCPNST 415 (467)
T ss_dssp TTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHHCCSCC
T ss_pred CCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCC----HHHHHHHCCCCC
Confidence 223445667754432 11113456788999999999999988875443333334 456778888754
No 211
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.73 E-value=0.00079 Score=68.70 Aligned_cols=179 Identities=15% Similarity=0.172 Sum_probs=94.4
Q ss_pred CCccchhHHHHHHHHHhh---c---------CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHH
Q 045686 152 GKTVGLDSIISEVWRCIE---D---------HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLE 219 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~---~---------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 219 (885)
.+++|.+..++++.+.+. . ...+-+.|+|++|+||||+|+.+++... ..| +.+..+.-.+
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~---~~~---~~i~~~~~~~-- 83 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK---VPF---FTISGSDFVE-- 83 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHT---CCE---EEECSCSSTT--
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC---CCE---EEEeHHHHHH--
Confidence 568899888877766542 1 1234588999999999999999998762 222 2232211100
Q ss_pred HHHHHHHHHcCCCccccCCCChhHHHHHHHHHhcCCCeEEEEecCCCcccc---------c---cccccc--cccc-cCC
Q 045686 220 KIQESILRRFEIPDQMWIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDL---------S---KVGVSD--LLDD-SSQ 284 (885)
Q Consensus 220 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~---------~---~~~~~~--~l~~-~~~ 284 (885)
...+.........+.......+.++++|+++....- . .....+ .+.. ...
T Consensus 84 ---------------~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 148 (257)
T 1lv7_A 84 ---------------MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN 148 (257)
T ss_dssp ---------------SCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSS
T ss_pred ---------------HhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccC
Confidence 001122222333333333456789999998432100 0 000000 0000 112
Q ss_pred CCCEEEEEcCChh-HHhhh----cccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCC-chhHHHH
Q 045686 285 TGSKIVFTTRSEE-VCGEM----GARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRG-LPLALVT 357 (885)
Q Consensus 285 ~gs~IivTTR~~~-v~~~~----~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~G-lPLai~~ 357 (885)
.+..||.||...+ +...+ .....+.+...+.++-.++++..+.......+.. ...+++.+.| .+--+..
T Consensus 149 ~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~----~~~la~~~~G~~~~dl~~ 223 (257)
T 1lv7_A 149 EGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDID----AAIIARGTPGFSGADLAN 223 (257)
T ss_dssp SCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCCHHHHHH
T ss_pred CCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCcccc----HHHHHHHcCCCCHHHHHH
Confidence 3445666766543 21111 1234677888888888888877764332222222 3557778888 6654443
No 212
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.71 E-value=0.00018 Score=71.71 Aligned_cols=135 Identities=13% Similarity=0.140 Sum_probs=75.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--cc-EEEEEEEcCcc-----cHHH-----------HHHHHHHHcCC
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FD-LVIWVKVSRDA-----NLEK-----------IQESILRRFEI 231 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~-~~~wv~v~~~~-----~~~~-----------~~~~i~~~l~~ 231 (885)
.++.+++|+|+.|+|||||.+.++.-..+..+. ++ .+.|+ .+.+ ++.+ -..++++..+.
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i~~v--~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l 109 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFC--SQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQL 109 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCEEEE--CSSCCCCSBCHHHHHHTTSCCCHHHHHHHHHHTTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEEEEE--ecCCcccCCCHHHHhhccCCcChHHHHHHHHHhCc
Confidence 467899999999999999999998876432111 11 12222 2221 1111 11222233222
Q ss_pred Ccc---------------ccCCCChhHHHHHHHHHhcCCCeEEEEecCCCcccccccccccc--ccccCCCCCEEEEEcC
Q 045686 232 PDQ---------------MWIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSDL--LDDSSQTGSKIVFTTR 294 (885)
Q Consensus 232 ~~~---------------~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~~--l~~~~~~gs~IivTTR 294 (885)
... ...-+..+...-.+.+.+..++-+++||+.....|......... +... ..|..||++|+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~~tvi~vtH 188 (229)
T 2pze_A 110 EEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKL-MANKTRILVTS 188 (229)
T ss_dssp HHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCC-TTTSEEEEECC
T ss_pred HHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHh-hCCCEEEEEcC
Confidence 100 00112234444567788888999999999998877544321111 1112 23778999999
Q ss_pred ChhHHhhhcccceeec
Q 045686 295 SEEVCGEMGARRRFRV 310 (885)
Q Consensus 295 ~~~v~~~~~~~~~~~l 310 (885)
+.+.+.. .++.+.+
T Consensus 189 ~~~~~~~--~d~v~~l 202 (229)
T 2pze_A 189 KMEHLKK--ADKILIL 202 (229)
T ss_dssp CHHHHHH--CSEEEEE
T ss_pred ChHHHHh--CCEEEEE
Confidence 9876543 3444444
No 213
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.71 E-value=0.00014 Score=73.78 Aligned_cols=130 Identities=18% Similarity=0.210 Sum_probs=77.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--c-------------cEEEEEEEcCcc------cHH----------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--F-------------DLVIWVKVSRDA------NLE---------- 219 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f-------------~~~~wv~v~~~~------~~~---------- 219 (885)
.++.+++|+|+.|+|||||.+.++.-..+..+. + ..+.++ .+.. ++.
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v--~q~~~l~~~ltv~enl~~~~~~~ 116 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYL--PEEAGAYRNMQGIEYLRFVAGFY 116 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEE--CTTCCCCTTSBHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEE--cCCCCCCCCCcHHHHHHHHHHHc
Confidence 577899999999999999999998765431110 0 012232 2211 111
Q ss_pred --------HHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCCCC
Q 045686 220 --------KIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQTG 286 (885)
Q Consensus 220 --------~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~g 286 (885)
+...++++.+++.... ..-+..+...-.+.+.+..++-+++||+.....|........ .+......|
T Consensus 117 ~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g 196 (256)
T 1vpl_A 117 ASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEG 196 (256)
T ss_dssp CCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCC
Confidence 1234456666664311 112234445556788888999999999999887754331111 111122247
Q ss_pred CEEEEEcCChhHHhhh
Q 045686 287 SKIVFTTRSEEVCGEM 302 (885)
Q Consensus 287 s~IivTTR~~~v~~~~ 302 (885)
..||++|++.+.+..+
T Consensus 197 ~tiiivtHd~~~~~~~ 212 (256)
T 1vpl_A 197 LTILVSSHNMLEVEFL 212 (256)
T ss_dssp CEEEEEECCHHHHTTT
T ss_pred CEEEEEcCCHHHHHHH
Confidence 8999999997766543
No 214
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.70 E-value=0.0004 Score=77.48 Aligned_cols=178 Identities=14% Similarity=0.216 Sum_probs=101.0
Q ss_pred CCccchhHHHHHHHHHhh-------------cCCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccH
Q 045686 152 GKTVGLDSIISEVWRCIE-------------DHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANL 218 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~-------------~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 218 (885)
.+++|.+..+++|.+++. .....-|.|+|++|+|||++|+.+++.. ...| +.++++
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~---~~~f---v~vn~~----- 272 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAFF---FLINGP----- 272 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC---SSEE---EEEEHH-----
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh---CCCE---EEEEch-----
Confidence 357899999999988773 2345678999999999999999998875 2222 233321
Q ss_pred HHHHHHHHHHcCCCccccCCCChhHHHHHHHHHhcCCCeEEEEecCCCccc--------c-----ccccccccccc-cCC
Q 045686 219 EKIQESILRRFEIPDQMWIGKDEDGRANEILSNLRGKKFVLLLDDVWERLD--------L-----SKVGVSDLLDD-SSQ 284 (885)
Q Consensus 219 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~--------~-----~~~~~~~~l~~-~~~ 284 (885)
.+ ...+ .+.........+.....+++.+|+|||++.... . ..+...+. . ...
T Consensus 273 -~l----~~~~-------~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld--~~~~~ 338 (489)
T 3hu3_A 273 -EI----MSKL-------AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMD--GLKQR 338 (489)
T ss_dssp -HH----HTSC-------TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHH--HSCTT
T ss_pred -Hh----hhhh-------cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhh--ccccC
Confidence 11 1111 111122223334444556788999999843210 0 00100000 0 112
Q ss_pred CCCEEEEEcCChh-HHhhh----cccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCc-hhHHHHH
Q 045686 285 TGSKIVFTTRSEE-VCGEM----GARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGL-PLALVTI 358 (885)
Q Consensus 285 ~gs~IivTTR~~~-v~~~~----~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~Gl-PLai~~~ 358 (885)
.+..||.||...+ +...+ .....+.+...+.++-.+++...+.......+.+ ..++++.+.|. +-.+..+
T Consensus 339 ~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~----l~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 339 AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD----LEQVANETHGHVGADLAAL 414 (489)
T ss_dssp SCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCC----HHHHHHTCTTCCHHHHHHH
T ss_pred CceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhh----HHHHHHHccCCcHHHHHHH
Confidence 2345555665542 21111 2234688999999999999998875443333333 35677777775 4444433
No 215
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.68 E-value=0.00013 Score=73.08 Aligned_cols=136 Identities=13% Similarity=0.112 Sum_probs=74.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--cc-EEEEEEEcCcc-----cHH-----------HHHHHHHHHcCC
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FD-LVIWVKVSRDA-----NLE-----------KIQESILRRFEI 231 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~-~~~wv~v~~~~-----~~~-----------~~~~~i~~~l~~ 231 (885)
.++.+++|+|+.|+|||||++.++.-..+..+. ++ .+.| +.+.+ ++. ....++.+.++.
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~i~~--v~Q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l 106 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAY--VPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACAL 106 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSCEEE--ECSSCCCCSEEHHHHHHTTSCCCTTHHHHHHHHTTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEEE--EcCCCcCCCcCHHHHhhCccccCHHHHHHHHHHHhh
Confidence 567899999999999999999998876432111 11 1222 22221 111 111222222221
Q ss_pred ------Cc---------cccCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-ccc--ccCCCCCEEEEEc
Q 045686 232 ------PD---------QMWIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLD--DSSQTGSKIVFTT 293 (885)
Q Consensus 232 ------~~---------~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~--~~~~~gs~IivTT 293 (885)
.. ....-+..+...-.+.+.+..++-+++||++....|........ .+. .....|..||++|
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivt 186 (237)
T 2cbz_A 107 LPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVT 186 (237)
T ss_dssp HHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEEC
T ss_pred HHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEe
Confidence 00 00112223444456778888889999999999887764321111 110 0112478899999
Q ss_pred CChhHHhhhcccceeec
Q 045686 294 RSEEVCGEMGARRRFRV 310 (885)
Q Consensus 294 R~~~v~~~~~~~~~~~l 310 (885)
++.+.+.. .++.+.+
T Consensus 187 H~~~~~~~--~d~v~~l 201 (237)
T 2cbz_A 187 HSMSYLPQ--VDVIIVM 201 (237)
T ss_dssp SCSTTGGG--SSEEEEE
T ss_pred cChHHHHh--CCEEEEE
Confidence 99776542 3444444
No 216
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.68 E-value=6.5e-05 Score=73.83 Aligned_cols=129 Identities=17% Similarity=0.210 Sum_probs=76.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--c---------cEEEEEEEcCcc------cH---------------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--F---------DLVIWVKVSRDA------NL--------------- 218 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f---------~~~~wv~v~~~~------~~--------------- 218 (885)
.++.+++|+|+.|+|||||++.++.-..+..+. + ..+.|+ .+.+ ++
T Consensus 33 ~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v--~q~~~~~~~~tv~enl~~~~~~~~~~~ 110 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFL--PEEIIVPRKISVEDYLKAVASLYGVKV 110 (214)
T ss_dssp ETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEE--CSSCCCCTTSBHHHHHHHHHHHTTCCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEE--eCCCcCCCCCCHHHHHHHHHHhcCCch
Confidence 467899999999999999999998865432111 1 112333 2211 11
Q ss_pred -HHHHHHHHHHcCCCcc-c--cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCCCCCEEEEEc
Q 045686 219 -EKIQESILRRFEIPDQ-M--WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQTGSKIVFTT 293 (885)
Q Consensus 219 -~~~~~~i~~~l~~~~~-~--~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~gs~IivTT 293 (885)
.....++++.+++... . ..-+..+...-.+.+.+..++-+++||+.....|........ .+......|..||++|
T Consensus 111 ~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivt 190 (214)
T 1sgw_A 111 NKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISS 190 (214)
T ss_dssp CHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEE
T ss_pred HHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 1223456666766431 0 011223444556778888999999999999887765432211 1111222367899999
Q ss_pred CChhHHhh
Q 045686 294 RSEEVCGE 301 (885)
Q Consensus 294 R~~~v~~~ 301 (885)
++.+.+..
T Consensus 191 Hd~~~~~~ 198 (214)
T 1sgw_A 191 REELSYCD 198 (214)
T ss_dssp SSCCTTSS
T ss_pred CCHHHHHH
Confidence 98765443
No 217
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.65 E-value=5.7e-06 Score=79.97 Aligned_cols=56 Identities=20% Similarity=0.182 Sum_probs=26.2
Q ss_pred cCCcccEEecCCCCCCCc-----CchhhhcccccceeeccCCcccc-----cChhhhccccccEeec
Q 045686 561 SMDALEVLDLSYNLDLNQ-----LPEEIGRLKNLHHLNLSNTSIGC-----LPTAIKRLIKLKVLLL 617 (885)
Q Consensus 561 ~l~~L~~L~Ls~~~~i~~-----lp~~i~~L~~L~~L~Ls~~~i~~-----lp~~i~~L~~L~~L~l 617 (885)
..++|++|+|++| .+.. +...+...++|++|+|++|.|.. +...+...++|++|++
T Consensus 63 ~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L 128 (185)
T 1io0_A 63 TNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRI 128 (185)
T ss_dssp TCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEEC
T ss_pred hCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEe
Confidence 3455555555555 3332 22333344455555555555532 3333444455555555
No 218
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.65 E-value=0.00019 Score=86.67 Aligned_cols=157 Identities=13% Similarity=0.163 Sum_probs=84.9
Q ss_pred CCccchhHHHHHHHHHhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhccCC--CC--ccEEEEEEEcCcccHHHHHHHHHH
Q 045686 152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTG--HD--FDLVIWVKVSRDANLEKIQESILR 227 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~--~~--f~~~~wv~v~~~~~~~~~~~~i~~ 227 (885)
.++|||+++++++++.+......-+.++|++|+||||+|+.+++...... .. -..++++.++.-..
T Consensus 170 d~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~---------- 239 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA---------- 239 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC---------------
T ss_pred cccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc----------
Confidence 56899999999999999776666778999999999999999998763210 00 11233333211100
Q ss_pred HcCCCccccCCCChhHHHHHHHHHhc--CCCeEEEEecCCCccc-------cccccccccccccCCCCCEEEEEcCChhH
Q 045686 228 RFEIPDQMWIGKDEDGRANEILSNLR--GKKFVLLLDDVWERLD-------LSKVGVSDLLDDSSQTGSKIVFTTRSEEV 298 (885)
Q Consensus 228 ~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVLDdv~~~~~-------~~~~~~~~~l~~~~~~gs~IivTTR~~~v 298 (885)
+.. ...........+...+. +++.+|++||+..... +........+ ....+..+|.+|...+.
T Consensus 240 --g~~----~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~--l~~~~i~~I~at~~~~~ 311 (854)
T 1qvr_A 240 --GAK----YRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPA--LARGELRLIGATTLDEY 311 (854)
T ss_dssp ------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHH--HHTTCCCEEEEECHHHH
T ss_pred --cCc----cchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHH--HhCCCeEEEEecCchHH
Confidence 000 11123333333333333 3678999999975421 1111111110 12223456655554332
Q ss_pred H-----hhh-cccceeeccCCChHHHHHHHHHHh
Q 045686 299 C-----GEM-GARRRFRVECLSPEAALDLFRYKV 326 (885)
Q Consensus 299 ~-----~~~-~~~~~~~l~~L~~~~~~~Lf~~~~ 326 (885)
. ..+ .-...+.+++++.++..+++....
T Consensus 312 ~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~ 345 (854)
T 1qvr_A 312 REIEKDPALERRFQPVYVDEPTVEETISILRGLK 345 (854)
T ss_dssp HHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHH
T ss_pred hhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhh
Confidence 1 111 112358899999999999997544
No 219
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.65 E-value=2.2e-05 Score=75.73 Aligned_cols=89 Identities=18% Similarity=0.138 Sum_probs=66.6
Q ss_pred hhcCCcccEEecCCCCCCC-----cCchhhhcccccceeeccCCcccc-----cChhhhccccccEeecCCcccccc---
Q 045686 559 FDSMDALEVLDLSYNLDLN-----QLPEEIGRLKNLHHLNLSNTSIGC-----LPTAIKRLIKLKVLLLDGIQCHLS--- 625 (885)
Q Consensus 559 ~~~l~~L~~L~Ls~~~~i~-----~lp~~i~~L~~L~~L~Ls~~~i~~-----lp~~i~~L~~L~~L~l~~~~~l~~--- 625 (885)
+...+.|++|+|++|..+. .+...+...++|++|+|++|.|.. +...+...++|++|+|++|. +..
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~~g~ 110 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF-ISGSGI 110 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC-CCHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc-CCHHHH
Confidence 6678899999999883343 245566778899999999998843 55556677899999999996 443
Q ss_pred --cCCcccccCcccceecc--ccccccc
Q 045686 626 --IPEGVISSLSSLQVFSC--FSTELVE 649 (885)
Q Consensus 626 --lp~~~i~~L~~L~~L~l--~~~~~~~ 649 (885)
+... +...++|++|++ ++|.+..
T Consensus 111 ~~l~~~-L~~n~~L~~L~L~~~~N~i~~ 137 (185)
T 1io0_A 111 LALVEA-LQSNTSLIELRIDNQSQPLGN 137 (185)
T ss_dssp HHHHHG-GGGCSSCCEEECCCCSSCCCH
T ss_pred HHHHHH-HHhCCCceEEEecCCCCCCCH
Confidence 3333 677788999999 7787653
No 220
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.64 E-value=0.00023 Score=72.37 Aligned_cols=130 Identities=20% Similarity=0.202 Sum_probs=77.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--c----------------cEEEEEEEcCcc------cH--------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--F----------------DLVIWVKVSRDA------NL-------- 218 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f----------------~~~~wv~v~~~~------~~-------- 218 (885)
.++.+++|+|+.|+|||||++.++.-..+..+. | ..+.|+ .+.. ++
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v--~Q~~~l~~~~tv~e~l~~~~ 125 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMV--FQRFNLFPHMTVLNNITLAP 125 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEE--CSSCCCCTTSCHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEEE--eCCCcCCCCCCHHHHHHHHH
Confidence 578899999999999999999998765431110 0 012333 2211 11
Q ss_pred -----------HHHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-ccccc
Q 045686 219 -----------EKIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDS 282 (885)
Q Consensus 219 -----------~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~ 282 (885)
.+...++++.+++.... ..-+..+...-.+.+.+..++-+++||+.....|........ .+...
T Consensus 126 ~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l 205 (263)
T 2olj_A 126 MKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQL 205 (263)
T ss_dssp HHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 11233456666664311 011223444556778888899999999999887754332111 11112
Q ss_pred CCCCCEEEEEcCChhHHhhh
Q 045686 283 SQTGSKIVFTTRSEEVCGEM 302 (885)
Q Consensus 283 ~~~gs~IivTTR~~~v~~~~ 302 (885)
...|..||++|++.+.+..+
T Consensus 206 ~~~g~tvi~vtHd~~~~~~~ 225 (263)
T 2olj_A 206 ANEGMTMVVVTHEMGFAREV 225 (263)
T ss_dssp HHTTCEEEEECSCHHHHHHH
T ss_pred HhCCCEEEEEcCCHHHHHHh
Confidence 22378999999997766543
No 221
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.64 E-value=1.3e-05 Score=81.39 Aligned_cols=88 Identities=23% Similarity=0.280 Sum_probs=66.5
Q ss_pred hhcCCcccE--EecCCCCCCCcCchhh----hcccccceeeccCCccccc---ChhhhccccccEeecCCcccccccCCc
Q 045686 559 FDSMDALEV--LDLSYNLDLNQLPEEI----GRLKNLHHLNLSNTSIGCL---PTAIKRLIKLKVLLLDGIQCHLSIPEG 629 (885)
Q Consensus 559 ~~~l~~L~~--L~Ls~~~~i~~lp~~i----~~L~~L~~L~Ls~~~i~~l---p~~i~~L~~L~~L~l~~~~~l~~lp~~ 629 (885)
|...+.|+. ++++.| ....++..+ .++++|++|+|++|+|..+ |..+..+++|++|+|++|. +..+..
T Consensus 137 l~~dp~L~~~~l~l~~N-~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~~~- 213 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLN-RRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSERE- 213 (267)
T ss_dssp GGGCHHHHHTTCCCCTT-SHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSGGG-
T ss_pred cCCCcchhhcCccccCC-HHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCchh-
Confidence 555666666 677777 555555432 5689999999999998665 4667899999999999997 666532
Q ss_pred ccccCc--ccceecccccccccc
Q 045686 630 VISSLS--SLQVFSCFSTELVEL 650 (885)
Q Consensus 630 ~i~~L~--~L~~L~l~~~~~~~~ 650 (885)
+..+. +|++|++.+|.+.+.
T Consensus 214 -l~~l~~l~L~~L~L~~Npl~~~ 235 (267)
T 3rw6_A 214 -LDKIKGLKLEELWLDGNSLCDT 235 (267)
T ss_dssp -GGGGTTSCCSEEECTTSTTGGG
T ss_pred -hhhcccCCcceEEccCCcCccc
Confidence 55555 999999999998753
No 222
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.63 E-value=0.00077 Score=72.22 Aligned_cols=173 Identities=19% Similarity=0.214 Sum_probs=96.6
Q ss_pred CCccchhHHHHHHHHHhhc-------------CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccH
Q 045686 152 GKTVGLDSIISEVWRCIED-------------HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANL 218 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~-------------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 218 (885)
.++.|.++.+++|.+.+.- ...+=|.++|++|.|||.||+.+++... ..| +.+..+.-.+
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~---~~f---i~v~~s~l~s- 254 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTS---ATF---LRIVGSELIQ- 254 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHT---CEE---EEEESGGGCC-
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhC---CCE---EEEEHHHhhh-
Confidence 3456899988888776521 3457789999999999999999999873 222 2232221100
Q ss_pred HHHHHHHHHHcCCCccccCCCChhHHHHHH-HHHhcCCCeEEEEecCCCcccc--------c-c---ccccc-c-ccc-c
Q 045686 219 EKIQESILRRFEIPDQMWIGKDEDGRANEI-LSNLRGKKFVLLLDDVWERLDL--------S-K---VGVSD-L-LDD-S 282 (885)
Q Consensus 219 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l-~~~l~~k~~LlVLDdv~~~~~~--------~-~---~~~~~-~-l~~-~ 282 (885)
. +.+. .+.....+ ...-...+.+|++|+++....- . . ....+ . +.. .
T Consensus 255 -------------k---~vGe-sek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~ 317 (437)
T 4b4t_I 255 -------------K---YLGD-GPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFD 317 (437)
T ss_dssp -------------S---SSSH-HHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCC
T ss_pred -------------c---cCch-HHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcC
Confidence 0 0111 12222222 2233457899999998743110 0 0 00000 0 000 1
Q ss_pred CCCCCEEEEEcCChhHHh-hh----cccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCch
Q 045686 283 SQTGSKIVFTTRSEEVCG-EM----GARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLP 352 (885)
Q Consensus 283 ~~~gs~IivTTR~~~v~~-~~----~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP 352 (885)
...+..||.||...+... .+ .-...+.++..+.++-.++|+.++.......+.+ ...|++.+.|.-
T Consensus 318 ~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvd----l~~LA~~T~GfS 388 (437)
T 4b4t_I 318 DRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVN----LETLVTTKDDLS 388 (437)
T ss_dssp CSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCC----HHHHHHHCCSCC
T ss_pred CCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCCC
Confidence 223345566665544321 11 2335678888899998999988875543333334 456777787754
No 223
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.63 E-value=0.00015 Score=75.75 Aligned_cols=147 Identities=16% Similarity=0.105 Sum_probs=86.9
Q ss_pred chhHHHHHHHHHhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhccC-CCCccEEEEEEEcC-cccHHHHHHHHHHHcCCCc
Q 045686 156 GLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDT-GHDFDLVIWVKVSR-DANLEKIQESILRRFEIPD 233 (885)
Q Consensus 156 gr~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~-~~~f~~~~wv~v~~-~~~~~~~~~~i~~~l~~~~ 233 (885)
|.++.++.+.+.+..++...+.++|++|+||||+|+.+++..... ..+.+. .++..+. ...+..+ +++.+.+....
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~-~~l~~~~~~~~id~i-r~li~~~~~~p 78 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDV-LEIDPEGENIGIDDI-RTIKDFLNYSP 78 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTE-EEECCSSSCBCHHHH-HHHHHHHTSCC
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCE-EEEcCCcCCCCHHHH-HHHHHHHhhcc
Confidence 445667788888877667899999999999999999998753111 123332 3444332 2233222 22333332111
Q ss_pred cccCCCChhHHHHHHHHHhcCCCeEEEEecCCCccc--cccccccccccccCCCCCEEEEEcCCh-hHHhhhcccceeec
Q 045686 234 QMWIGKDEDGRANEILSNLRGKKFVLLLDDVWERLD--LSKVGVSDLLDDSSQTGSKIVFTTRSE-EVCGEMGARRRFRV 310 (885)
Q Consensus 234 ~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~--~~~~~~~~~l~~~~~~gs~IivTTR~~-~v~~~~~~~~~~~l 310 (885)
..+++-++|+|+++.... ...+...+- .....+.+|++|.+. .+...+... .+++
T Consensus 79 ------------------~~~~~kvviIdead~lt~~a~naLLk~LE---ep~~~t~fIl~t~~~~kl~~tI~SR-~~~f 136 (305)
T 2gno_A 79 ------------------ELYTRKYVIVHDCERMTQQAANAFLKALE---EPPEYAVIVLNTRRWHYLLPTIKSR-VFRV 136 (305)
T ss_dssp ------------------SSSSSEEEEETTGGGBCHHHHHHTHHHHH---SCCTTEEEEEEESCGGGSCHHHHTT-SEEE
T ss_pred ------------------ccCCceEEEeccHHHhCHHHHHHHHHHHh---CCCCCeEEEEEECChHhChHHHHce-eEeC
Confidence 124577999999975421 122211111 233456666666443 444444455 8999
Q ss_pred cCCChHHHHHHHHHHh
Q 045686 311 ECLSPEAALDLFRYKV 326 (885)
Q Consensus 311 ~~L~~~~~~~Lf~~~~ 326 (885)
.++++++..+.+.+.+
T Consensus 137 ~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 137 VVNVPKEFRDLVKEKI 152 (305)
T ss_dssp ECCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998877
No 224
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.61 E-value=0.00039 Score=71.10 Aligned_cols=129 Identities=18% Similarity=0.230 Sum_probs=77.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh--ccCCC--Ccc---------------EEEEEEEcCccc------H-------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKF--RDTGH--DFD---------------LVIWVKVSRDAN------L------- 218 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~--~~~~~--~f~---------------~~~wv~v~~~~~------~------- 218 (885)
.++.+++|+|+.|+|||||++.++.-. .+..+ .|+ .+.++ .+.+. +
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v--~Q~~~l~~~~tv~e~~~~~ 121 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMA--FQYPVEIPGVSNQFFLQTA 121 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEE--CSSCCCCTTCBHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEE--ccCccccccccHHHHHHHH
Confidence 578899999999999999999999852 11101 010 12222 22210 0
Q ss_pred ------------------HHHHHHHHHHcCCCc---cccC---CCChhHHHHHHHHHhcCCCeEEEEecCCCcccccccc
Q 045686 219 ------------------EKIQESILRRFEIPD---QMWI---GKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVG 274 (885)
Q Consensus 219 ------------------~~~~~~i~~~l~~~~---~~~~---~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~ 274 (885)
.....++++.+++.. .... -+..+...-.+.+.+..++-+++||+.....|.....
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~ 201 (267)
T 2zu0_C 122 LNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALK 201 (267)
T ss_dssp HHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHH
T ss_pred HHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHH
Confidence 112345666677642 1111 2223444556778888899999999999887754332
Q ss_pred ccc-cccccCCCCCEEEEEcCChhHHhh
Q 045686 275 VSD-LLDDSSQTGSKIVFTTRSEEVCGE 301 (885)
Q Consensus 275 ~~~-~l~~~~~~gs~IivTTR~~~v~~~ 301 (885)
... .+......|..||++|++.+.+..
T Consensus 202 ~l~~~l~~l~~~g~tviivtHd~~~~~~ 229 (267)
T 2zu0_C 202 VVADGVNSLRDGKRSFIIVTHYQRILDY 229 (267)
T ss_dssp HHHHHHHTTCCSSCEEEEECSSGGGGGT
T ss_pred HHHHHHHHHHhcCCEEEEEeeCHHHHHh
Confidence 111 111123347899999999876654
No 225
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.61 E-value=0.00025 Score=71.56 Aligned_cols=136 Identities=15% Similarity=0.184 Sum_probs=78.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--c--------------cEEEEEE---------EcC--------ccc
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--F--------------DLVIWVK---------VSR--------DAN 217 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f--------------~~~~wv~---------v~~--------~~~ 217 (885)
..+.+++|+|+.|+|||||++.++.-..+..+. + ..+.|+. +.+ ...
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~ 105 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYT 105 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCEEHHHHTTSCTTSCSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCccccccHHHHHhhhccCCCC
Confidence 578899999999999999999998765321111 0 0122221 111 011
Q ss_pred HHHHHHHHHHHcCCCccc---------------cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccc
Q 045686 218 LEKIQESILRRFEIPDQM---------------WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDD 281 (885)
Q Consensus 218 ~~~~~~~i~~~l~~~~~~---------------~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~ 281 (885)
.....++++.++..... ..-+..+...-.+.+.+..++-+++||+.....|........ .+..
T Consensus 106 -~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~ 184 (243)
T 1mv5_A 106 -DEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDS 184 (243)
T ss_dssp -HHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHH
T ss_pred -HHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 12234445555543210 011223444446778888888999999998887765432211 1111
Q ss_pred cCCCCCEEEEEcCChhHHhhhcccceeec
Q 045686 282 SSQTGSKIVFTTRSEEVCGEMGARRRFRV 310 (885)
Q Consensus 282 ~~~~gs~IivTTR~~~v~~~~~~~~~~~l 310 (885)
.. .|..||++|++.+.+.. .++.+.+
T Consensus 185 ~~-~~~tvi~vtH~~~~~~~--~d~v~~l 210 (243)
T 1mv5_A 185 LM-KGRTTLVIAHRLSTIVD--ADKIYFI 210 (243)
T ss_dssp HH-TTSEEEEECCSHHHHHH--CSEEEEE
T ss_pred hc-CCCEEEEEeCChHHHHh--CCEEEEE
Confidence 22 47899999999876643 4444444
No 226
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.61 E-value=0.00011 Score=74.38 Aligned_cols=130 Identities=19% Similarity=0.203 Sum_probs=78.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCc---cEEEEEEEcCcc------c----------------------HH
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDF---DLVIWVKVSRDA------N----------------------LE 219 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f---~~~~wv~v~~~~------~----------------------~~ 219 (885)
..+.+++|+|++|+|||||.+.++.-..+..+.. ..+.|+. +.. + ..
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~--q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~ 106 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVP--QFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDY 106 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEEC--SCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEc--CCCccCCCCCHHHHHHHhhhhhcccccCCCHHHH
Confidence 4678999999999999999999988764321111 1122321 110 0 11
Q ss_pred HHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-ccccc-CCCCCEEEEEc
Q 045686 220 KIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDS-SQTGSKIVFTT 293 (885)
Q Consensus 220 ~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~-~~~gs~IivTT 293 (885)
+...++++.+++.... ..-+..+...-.+.+.+..++-+++||+.....|........ .+... ...|..||++|
T Consensus 107 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vt 186 (253)
T 2nq2_C 107 QVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTT 186 (253)
T ss_dssp HHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEE
T ss_pred HHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 2345566777764311 112234445556788888899999999999887754432111 11112 22378899999
Q ss_pred CChhHHhhh
Q 045686 294 RSEEVCGEM 302 (885)
Q Consensus 294 R~~~v~~~~ 302 (885)
++.+.+...
T Consensus 187 Hd~~~~~~~ 195 (253)
T 2nq2_C 187 HQPNQVVAI 195 (253)
T ss_dssp SCHHHHHHH
T ss_pred cCHHHHHHh
Confidence 997765443
No 227
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.60 E-value=0.00021 Score=75.68 Aligned_cols=130 Identities=21% Similarity=0.224 Sum_probs=80.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--c-----------------cEEEEEEEcCcc------cH-------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--F-----------------DLVIWVKVSRDA------NL------- 218 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f-----------------~~~~wv~v~~~~------~~------- 218 (885)
.++.+++|+|++|+|||||++.+..-.++..+. | ..+.+| .|.+ ++
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v--~Q~~~l~~~~TV~env~~~ 129 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMI--FQHFNLLSSRTVFGNVALP 129 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEE--CSSCCCCTTSCHHHHHHHH
T ss_pred cCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEE--eCCCccCCCCCHHHHHHHH
Confidence 678999999999999999999998765432110 1 012222 1221 11
Q ss_pred -----------HHHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-ccccc
Q 045686 219 -----------EKIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDS 282 (885)
Q Consensus 219 -----------~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~ 282 (885)
.+...++++.+++.... ..-+..+...-.+.+.|..++-+|++|+..+..|.......+ .+...
T Consensus 130 ~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l 209 (366)
T 3tui_C 130 LELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDI 209 (366)
T ss_dssp HHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHH
Confidence 12244566667764321 112234455556888999999999999999887764332111 11111
Q ss_pred -CCCCCEEEEEcCChhHHhhh
Q 045686 283 -SQTGSKIVFTTRSEEVCGEM 302 (885)
Q Consensus 283 -~~~gs~IivTTR~~~v~~~~ 302 (885)
...|..||++|++.+++..+
T Consensus 210 ~~~~g~Tii~vTHdl~~~~~~ 230 (366)
T 3tui_C 210 NRRLGLTILLITHEMDVVKRI 230 (366)
T ss_dssp HHHSCCEEEEEESCHHHHHHH
T ss_pred HHhCCCEEEEEecCHHHHHHh
Confidence 23488999999998877654
No 228
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.60 E-value=0.00016 Score=73.97 Aligned_cols=130 Identities=23% Similarity=0.261 Sum_probs=78.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--c----------------cEEEEEEEcCcc-------cH-------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--F----------------DLVIWVKVSRDA-------NL------- 218 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f----------------~~~~wv~v~~~~-------~~------- 218 (885)
.++.+++|+|+.|+|||||++.++.-..+..+. + ..+.++ .|.+ ++
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v--~Q~~~~~~~~~tv~e~l~~~ 109 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIV--FQDPDNQLFSASVYQDVSFG 109 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEE--CSSGGGTCCSSBHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEEE--EcCcccccccCcHHHHHHHH
Confidence 567899999999999999999998765321110 0 012222 2211 11
Q ss_pred -----------HHHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-ccccc
Q 045686 219 -----------EKIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDS 282 (885)
Q Consensus 219 -----------~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~ 282 (885)
.+...++++.+++.... ..-+..+...-.+.+.+..++-+|+||+..+..|........ .+...
T Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l 189 (275)
T 3gfo_A 110 AVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEM 189 (275)
T ss_dssp HHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHH
Confidence 12234566666664311 112234455556888899999999999999887754431111 11111
Q ss_pred C-CCCCEEEEEcCChhHHhhh
Q 045686 283 S-QTGSKIVFTTRSEEVCGEM 302 (885)
Q Consensus 283 ~-~~gs~IivTTR~~~v~~~~ 302 (885)
. ..|..||++|++.+.+..+
T Consensus 190 ~~~~g~tvi~vtHdl~~~~~~ 210 (275)
T 3gfo_A 190 QKELGITIIIATHDIDIVPLY 210 (275)
T ss_dssp HHHHCCEEEEEESCCSSGGGG
T ss_pred HhhCCCEEEEEecCHHHHHHh
Confidence 2 2378999999997665543
No 229
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.59 E-value=0.00023 Score=71.28 Aligned_cols=128 Identities=19% Similarity=0.190 Sum_probs=77.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--c------------------cEEEEEEEcCcc------cH------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--F------------------DLVIWVKVSRDA------NL------ 218 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f------------------~~~~wv~v~~~~------~~------ 218 (885)
..+.+++|+|+.|+|||||++.++.-..+..+. + ..+.|+. +.+ ++
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~--Q~~~l~~~~tv~enl~~ 106 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVF--QQFNLIPLLTALENVEL 106 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEEC--TTCCCCTTSCHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEe--cCCccCCCCcHHHHHHH
Confidence 567899999999999999999998765432110 0 0133332 211 11
Q ss_pred ---------------HHHHHHHHHHcCCCccc-----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-
Q 045686 219 ---------------EKIQESILRRFEIPDQM-----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD- 277 (885)
Q Consensus 219 ---------------~~~~~~i~~~l~~~~~~-----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~- 277 (885)
.+...++++.+++.... ..-+..+...-.+.+.+..++-+|+||+.....|........
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~ 186 (235)
T 3tif_A 107 PLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQ 186 (235)
T ss_dssp HHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHH
T ss_pred HHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 11233456666654311 112234445556788888899999999999887754332111
Q ss_pred ccccc-CCCCCEEEEEcCChhHHh
Q 045686 278 LLDDS-SQTGSKIVFTTRSEEVCG 300 (885)
Q Consensus 278 ~l~~~-~~~gs~IivTTR~~~v~~ 300 (885)
.+... ...|..||++|++.+++.
T Consensus 187 ~l~~l~~~~g~tvi~vtHd~~~~~ 210 (235)
T 3tif_A 187 LLKKLNEEDGKTVVVVTHDINVAR 210 (235)
T ss_dssp HHHHHHHHHCCEEEEECSCHHHHT
T ss_pred HHHHHHHHcCCEEEEEcCCHHHHH
Confidence 11112 223789999999988764
No 230
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.59 E-value=0.00051 Score=74.56 Aligned_cols=173 Identities=17% Similarity=0.168 Sum_probs=96.3
Q ss_pred CCccchhHHHHHHHHHhh-------------cCCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccH
Q 045686 152 GKTVGLDSIISEVWRCIE-------------DHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANL 218 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~-------------~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 218 (885)
.++.|.++.+++|.+.+. -...+-|.++|++|+|||.||+.+++... ..| +.+..+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~---~~f---~~v~~s~l~~- 253 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTN---ATF---LKLAAPQLVQ- 253 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHT---CEE---EEEEGGGGCS-
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhC---CCE---EEEehhhhhh-
Confidence 356799999998887652 13457788999999999999999999873 222 2333222100
Q ss_pred HHHHHHHHHHcCCCccccCCCChhHHHHHH-HHHhcCCCeEEEEecCCCcc----ccc-----cc----cccc-cccc-c
Q 045686 219 EKIQESILRRFEIPDQMWIGKDEDGRANEI-LSNLRGKKFVLLLDDVWERL----DLS-----KV----GVSD-LLDD-S 282 (885)
Q Consensus 219 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l-~~~l~~k~~LlVLDdv~~~~----~~~-----~~----~~~~-~l~~-~ 282 (885)
. +.+. .+.....+ ...-...+.+|++|+++... +-. .. ...+ .+.. .
T Consensus 254 -------------~---~vGe-se~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~ 316 (434)
T 4b4t_M 254 -------------M---YIGE-GAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFS 316 (434)
T ss_dssp -------------S---CSSH-HHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSC
T ss_pred -------------c---ccch-HHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccC
Confidence 0 0111 11222222 22234578999999986320 000 00 0000 0000 1
Q ss_pred CCCCCEEEEEcCChhHHh-----hhcccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCch
Q 045686 283 SQTGSKIVFTTRSEEVCG-----EMGARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLP 352 (885)
Q Consensus 283 ~~~gs~IivTTR~~~v~~-----~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP 352 (885)
...+..||.||...+... .-.-...+.++..+.++-.++|+.++.......+.+ ...|++.+.|.-
T Consensus 317 ~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvd----l~~lA~~t~G~s 387 (434)
T 4b4t_M 317 SDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDIN----WQELARSTDEFN 387 (434)
T ss_dssp SSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCC----HHHHHHHCSSCC
T ss_pred CCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCCC
Confidence 223445666776554321 112345788888899988899987764332222333 466778887754
No 231
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.58 E-value=0.00025 Score=72.53 Aligned_cols=129 Identities=16% Similarity=0.170 Sum_probs=77.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--cc-----------EEEEEEEcCcc-------cH------------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FD-----------LVIWVKVSRDA-------NL------------ 218 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~-----------~~~wv~v~~~~-------~~------------ 218 (885)
..+.+++|+|+.|+|||||++.++.-..+..+. ++ .+.++ .+.+ ++
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~~v--~q~~~~~~~~~tv~enl~~~~~~~~ 108 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIA--FQYPEDQFFAERVFDEVAFAVKNFY 108 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEEEE--CSSGGGGCCCSSHHHHHHHTTTTTC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEEEE--eccchhhcCCCcHHHHHHHHHHhcC
Confidence 577899999999999999999998765432111 11 12232 2221 11
Q ss_pred -----HHHHHHHHHHcCCC--ccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCCCC
Q 045686 219 -----EKIQESILRRFEIP--DQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQTG 286 (885)
Q Consensus 219 -----~~~~~~i~~~l~~~--~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~g 286 (885)
.+...++++.+++. ... ..-+..+...-.+.+.+..++-+++||+.....|........ .+......|
T Consensus 109 ~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g 188 (266)
T 2yz2_A 109 PDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLG 188 (266)
T ss_dssp TTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcC
Confidence 12234566667765 211 012233444556778888899999999999887764432111 111122237
Q ss_pred CEEEEEcCChhHHhh
Q 045686 287 SKIVFTTRSEEVCGE 301 (885)
Q Consensus 287 s~IivTTR~~~v~~~ 301 (885)
..||++|++.+.+..
T Consensus 189 ~tii~vtHd~~~~~~ 203 (266)
T 2yz2_A 189 KTVILISHDIETVIN 203 (266)
T ss_dssp CEEEEECSCCTTTGG
T ss_pred CEEEEEeCCHHHHHH
Confidence 899999999765544
No 232
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.58 E-value=0.00013 Score=72.48 Aligned_cols=127 Identities=19% Similarity=0.234 Sum_probs=76.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--c------------------cEEEEEEEcCcc------cH------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--F------------------DLVIWVKVSRDA------NL------ 218 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f------------------~~~~wv~v~~~~------~~------ 218 (885)
.++.+++|+|+.|+|||||++.++.-..+..+. | ..+.++. +.+ ++
T Consensus 28 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~--q~~~l~~~~tv~e~l~~ 105 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVF--QFHYLIPELTALENVIV 105 (224)
T ss_dssp ETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEEC--SSCCCCTTSCHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEe--cCcccCCCCCHHHHHHh
Confidence 467899999999999999999998765421110 0 1133332 211 11
Q ss_pred ------------HHHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccc
Q 045686 219 ------------EKIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDD 281 (885)
Q Consensus 219 ------------~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~ 281 (885)
.+...++++.+++.... ..-+..+...-.+.+.+..++-+++||+.....|........ .+..
T Consensus 106 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~ 185 (224)
T 2pcj_A 106 PMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLK 185 (224)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 11234566677764321 012233445556788888999999999999887764332111 1111
Q ss_pred cCCCCCEEEEEcCChhHH
Q 045686 282 SSQTGSKIVFTTRSEEVC 299 (885)
Q Consensus 282 ~~~~gs~IivTTR~~~v~ 299 (885)
....|..||++|++.+.+
T Consensus 186 l~~~g~tvi~vtHd~~~~ 203 (224)
T 2pcj_A 186 INEGGTSIVMVTHERELA 203 (224)
T ss_dssp HHHTTCEEEEECSCHHHH
T ss_pred HHHCCCEEEEEcCCHHHH
Confidence 222378999999998776
No 233
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.55 E-value=0.00028 Score=71.90 Aligned_cols=130 Identities=19% Similarity=0.213 Sum_probs=77.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--cc---------------------------EEEEEEEcCcc-----
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FD---------------------------LVIWVKVSRDA----- 216 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~---------------------------~~~wv~v~~~~----- 216 (885)
..+.+++|+|+.|+|||||++.++.-..+..+. |+ .+.++ .+..
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v--~Q~~~l~~~ 107 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMV--FQHFNLWSH 107 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEE--CSSCCCCTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhcceEEE--ecCcccCCC
Confidence 578899999999999999999998765431110 10 12222 2211
Q ss_pred -cH-------------------HHHHHHHHHHcCCCcc-c----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccc
Q 045686 217 -NL-------------------EKIQESILRRFEIPDQ-M----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLS 271 (885)
Q Consensus 217 -~~-------------------~~~~~~i~~~l~~~~~-~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~ 271 (885)
++ .+...++++.+++... . ..-+..+...-.+.+.+..++-+++||+.....|..
T Consensus 108 ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~ 187 (262)
T 1b0u_A 108 MTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPE 187 (262)
T ss_dssp SCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHH
T ss_pred CcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHH
Confidence 11 1123345666666432 1 011223444556778888899999999999887754
Q ss_pred cccccc-cccccCCCCCEEEEEcCChhHHhhh
Q 045686 272 KVGVSD-LLDDSSQTGSKIVFTTRSEEVCGEM 302 (885)
Q Consensus 272 ~~~~~~-~l~~~~~~gs~IivTTR~~~v~~~~ 302 (885)
...... .+......|..||++|++.+.+..+
T Consensus 188 ~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~ 219 (262)
T 1b0u_A 188 LVGEVLRIMQQLAEEGKTMVVVTHEMGFARHV 219 (262)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEECSCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence 331111 1111222377899999997766543
No 234
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.55 E-value=0.0011 Score=71.93 Aligned_cols=174 Identities=17% Similarity=0.219 Sum_probs=92.1
Q ss_pred CCccchhHHHHHHHHHhhc-------------CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccH
Q 045686 152 GKTVGLDSIISEVWRCIED-------------HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANL 218 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~-------------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 218 (885)
.++.|.++.+++|.+.+.- ...+-|.++|++|+|||+||+.+++... ..| +.+..++-.+
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~---~~~---~~v~~~~l~~- 244 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTK---AAF---IRVNGSEFVH- 244 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHT---CEE---EEEEGGGTCC-
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhC---CCe---EEEecchhhc-
Confidence 4567999999888876621 3456788999999999999999999873 222 2333322110
Q ss_pred HHHHHHHHHHcCCCccccCCCChhHHHHHHHHHhcCCCeEEEEecCCCcc--------ccc----cccccc--cccc-cC
Q 045686 219 EKIQESILRRFEIPDQMWIGKDEDGRANEILSNLRGKKFVLLLDDVWERL--------DLS----KVGVSD--LLDD-SS 283 (885)
Q Consensus 219 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~--------~~~----~~~~~~--~l~~-~~ 283 (885)
.+.+.+...+......+-...+.++++|+++... ... .....+ .+.. ..
T Consensus 245 ----------------~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~ 308 (428)
T 4b4t_K 245 ----------------KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQ 308 (428)
T ss_dssp ----------------SSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCS
T ss_pred ----------------cccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCC
Confidence 0011112222222223334678999999985311 000 000000 0000 12
Q ss_pred CCCCEEEEEcCChhH-----HhhhcccceeeccCC-ChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCch
Q 045686 284 QTGSKIVFTTRSEEV-----CGEMGARRRFRVECL-SPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLP 352 (885)
Q Consensus 284 ~~gs~IivTTR~~~v-----~~~~~~~~~~~l~~L-~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP 352 (885)
..|..||.||...+. .....-...+.+..+ +.++-..+|+.++.......+.+ ...|++.+.|.-
T Consensus 309 ~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~d----l~~lA~~t~G~s 379 (428)
T 4b4t_K 309 STNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEAD----LDSLIIRNDSLS 379 (428)
T ss_dssp SCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCC----HHHHHHHTTTCC
T ss_pred CCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHHCCCCC
Confidence 334456667754432 221123346777655 44555566766664333223334 456777887754
No 235
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.55 E-value=0.00076 Score=80.46 Aligned_cols=149 Identities=16% Similarity=0.158 Sum_probs=83.7
Q ss_pred CCccchhHHHHHHHHHhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC---ccE-EEEEEEcCcccHHHHHHHHHH
Q 045686 152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD---FDL-VIWVKVSRDANLEKIQESILR 227 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~---f~~-~~wv~v~~~~~~~~~~~~i~~ 227 (885)
.++|||+++++++...+......-+.++|++|+|||++|+.+++........ ... .+.+..
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~--------------- 244 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM--------------- 244 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------------
T ss_pred CCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc---------------
Confidence 4689999999999999977666678899999999999999999886311000 011 111111
Q ss_pred HcCCCccccCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccccccccCCCCCEEEEEcCChhHHh------h
Q 045686 228 RFEIPDQMWIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSDLLDDSSQTGSKIVFTTRSEEVCG------E 301 (885)
Q Consensus 228 ~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~~l~~~~~~gs~IivTTR~~~v~~------~ 301 (885)
+... .+.........+......++.+|++|. ..+......+. ......++|.||...+... .
T Consensus 245 --g~~~---~G~~e~~l~~~~~~~~~~~~~iLfiD~---~~~~~~~L~~~----l~~~~v~~I~at~~~~~~~~~~~d~a 312 (758)
T 3pxi_A 245 --GTKY---RGEFEDRLKKVMDEIRQAGNIILFIDA---AIDASNILKPS----LARGELQCIGATTLDEYRKYIEKDAA 312 (758)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEECC-----------CCC----TTSSSCEEEEECCTTTTHHHHTTCSH
T ss_pred --cccc---cchHHHHHHHHHHHHHhcCCEEEEEcC---chhHHHHHHHH----HhcCCEEEEeCCChHHHHHHhhccHH
Confidence 1110 111111222223333346788999992 11221111111 1233466777766544111 0
Q ss_pred -hcccceeeccCCChHHHHHHHHHHhc
Q 045686 302 -MGARRRFRVECLSPEAALDLFRYKVG 327 (885)
Q Consensus 302 -~~~~~~~~l~~L~~~~~~~Lf~~~~~ 327 (885)
..-...+.++..+.++..+++.....
T Consensus 313 l~rRf~~i~v~~p~~~~~~~il~~~~~ 339 (758)
T 3pxi_A 313 LERRFQPIQVDQPSVDESIQILQGLRD 339 (758)
T ss_dssp HHHSEEEEECCCCCHHHHHHHHHHTTT
T ss_pred HHhhCcEEEeCCCCHHHHHHHHHHHHH
Confidence 01124689999999999999987654
No 236
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.53 E-value=0.00022 Score=72.81 Aligned_cols=132 Identities=14% Similarity=0.128 Sum_probs=78.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--cc--------------EEEEEEEcC----cc--------------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FD--------------LVIWVKVSR----DA-------------- 216 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~--------------~~~wv~v~~----~~-------------- 216 (885)
.++.+++|+|+.|+|||||++.++.-..+..+. |+ .+.++.-.. ..
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~ 114 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPYG 114 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTSC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhcC
Confidence 567899999999999999999998765432111 10 122221100 01
Q ss_pred --cHHHHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcC------CCeEEEEecCCCccccccccccc-ccccc-
Q 045686 217 --NLEKIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRG------KKFVLLLDDVWERLDLSKVGVSD-LLDDS- 282 (885)
Q Consensus 217 --~~~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~------k~~LlVLDdv~~~~~~~~~~~~~-~l~~~- 282 (885)
...+...++++.+++.... ..-+..+...-.+.+.+.. ++-+|+||+..+..|........ .+...
T Consensus 115 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~ 194 (266)
T 4g1u_C 115 GSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLT 194 (266)
T ss_dssp STTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHH
Confidence 1223455677777764321 1122344445567777777 89999999999887754331111 11111
Q ss_pred CCCCCEEEEEcCChhHHhhh
Q 045686 283 SQTGSKIVFTTRSEEVCGEM 302 (885)
Q Consensus 283 ~~~gs~IivTTR~~~v~~~~ 302 (885)
...|..||++|++.+.+...
T Consensus 195 ~~~~~tvi~vtHdl~~~~~~ 214 (266)
T 4g1u_C 195 RQEPLAVCCVLHDLNLAALY 214 (266)
T ss_dssp HHSSEEEEEECSCHHHHHHH
T ss_pred HcCCCEEEEEEcCHHHHHHh
Confidence 22356899999998776543
No 237
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.52 E-value=0.00018 Score=72.43 Aligned_cols=129 Identities=18% Similarity=0.189 Sum_probs=74.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--c---------------cEEEEEEEcCcc------c----------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--F---------------DLVIWVKVSRDA------N---------- 217 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f---------------~~~~wv~v~~~~------~---------- 217 (885)
.++.+++|+|+.|+|||||.+.++.-..+..+. | ..+.|+. +.. +
T Consensus 30 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~--q~~~l~~~ltv~enl~~~~~ 107 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVP--EGRRIFPELTVYENLMMGAY 107 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEEC--SSCCCCTTSBHHHHHHGGGT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEe--cCCccCCCCcHHHHHHHhhh
Confidence 467899999999999999999998765431110 0 0133332 110 1
Q ss_pred -------HHHHHHHHHHHcC-CCcc----ccCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCC
Q 045686 218 -------LEKIQESILRRFE-IPDQ----MWIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQ 284 (885)
Q Consensus 218 -------~~~~~~~i~~~l~-~~~~----~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~ 284 (885)
..+...++++.++ +... ...-+..+...-.+.+.+..++-+++||+.....|........ .+.....
T Consensus 108 ~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~ 187 (240)
T 1ji0_A 108 NRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ 187 (240)
T ss_dssp TCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 1223344555553 3211 0112233444456778888899999999999887764331111 1111222
Q ss_pred CCCEEEEEcCChhHHhh
Q 045686 285 TGSKIVFTTRSEEVCGE 301 (885)
Q Consensus 285 ~gs~IivTTR~~~v~~~ 301 (885)
.|..||++|++.+.+..
T Consensus 188 ~g~tvi~vtHd~~~~~~ 204 (240)
T 1ji0_A 188 EGTTILLVEQNALGALK 204 (240)
T ss_dssp TTCCEEEEESCHHHHHH
T ss_pred CCCEEEEEecCHHHHHH
Confidence 47789999999765443
No 238
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.52 E-value=0.00064 Score=71.54 Aligned_cols=46 Identities=24% Similarity=0.296 Sum_probs=38.1
Q ss_pred CCccchhHHHHHHHHHhhc--------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 045686 152 GKTVGLDSIISEVWRCIED--------------HNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~--------------~~~~vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
..++|++..++.+...+.. .....+.++|++|+|||++|+.+++..
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999998887743 235667899999999999999999876
No 239
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.51 E-value=0.00024 Score=71.94 Aligned_cols=138 Identities=17% Similarity=0.156 Sum_probs=76.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhh--hccCCCC--ccE---------------EEEEEEcCcc------cH-------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNK--FRDTGHD--FDL---------------VIWVKVSRDA------NL------- 218 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~--~~~~~~~--f~~---------------~~wv~v~~~~------~~------- 218 (885)
.++.+++|+|+.|+|||||++.++.- ..+..+. ++. +.++ .+.+ ++
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v--~q~~~~~~~~tv~e~l~~~ 104 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLA--FQYPVEVPGVTIANFLRLA 104 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCC--CCCCC-CCSCBHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEe--ccCCccccCCCHHHHHHHH
Confidence 46789999999999999999999985 2211000 000 1111 1111 11
Q ss_pred --------------HHHHHHHHHHcCCC-c--ccc--C-CCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-
Q 045686 219 --------------EKIQESILRRFEIP-D--QMW--I-GKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD- 277 (885)
Q Consensus 219 --------------~~~~~~i~~~l~~~-~--~~~--~-~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~- 277 (885)
.+...++++.+++. . ... . -+..+...-.+.+.+..++-+++||+.....|........
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~ 184 (250)
T 2d2e_A 105 LQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVAR 184 (250)
T ss_dssp HHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHH
T ss_pred HHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHH
Confidence 11233456666763 2 111 1 2233444556778888889999999998877754332111
Q ss_pred cccccCCCCCEEEEEcCChhHHhhhcccceeec
Q 045686 278 LLDDSSQTGSKIVFTTRSEEVCGEMGARRRFRV 310 (885)
Q Consensus 278 ~l~~~~~~gs~IivTTR~~~v~~~~~~~~~~~l 310 (885)
.+......|..||++|++.+.+.....++.+.+
T Consensus 185 ~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l 217 (250)
T 2d2e_A 185 GVNAMRGPNFGALVITHYQRILNYIQPDKVHVM 217 (250)
T ss_dssp HHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEE
T ss_pred HHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEE
Confidence 111122357899999999776654322344433
No 240
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.47 E-value=0.00036 Score=70.41 Aligned_cols=135 Identities=18% Similarity=0.141 Sum_probs=75.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--c--------------cEEEEEEEcCcc-----cHH----------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--F--------------DLVIWVKVSRDA-----NLE---------- 219 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f--------------~~~~wv~v~~~~-----~~~---------- 219 (885)
.++.+++|+|+.|+|||||++.++.-..+..+. | ..+.|+ .+.+ ++.
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v--~Q~~~l~~~tv~enl~~~~~~~ 110 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVV--LQDNVLLNRSIIDNISLANPGM 110 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEE--CSSCCCTTSBHHHHHTTTCTTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEEE--eCCCccccccHHHHHhccCCCC
Confidence 467899999999999999999998765431110 0 012232 2211 111
Q ss_pred --HHHHHHHHHcCCCcc---------------ccCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccc
Q 045686 220 --KIQESILRRFEIPDQ---------------MWIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDD 281 (885)
Q Consensus 220 --~~~~~i~~~l~~~~~---------------~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~ 281 (885)
+...++++.+++... ...-+..+...-.+.+.+..++-+++||+.....|........ .+..
T Consensus 111 ~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~ 190 (247)
T 2ff7_A 111 SVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK 190 (247)
T ss_dssp CHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 111223333332110 0012223444456778888889999999999887754331111 1111
Q ss_pred cCCCCCEEEEEcCChhHHhhhcccceeec
Q 045686 282 SSQTGSKIVFTTRSEEVCGEMGARRRFRV 310 (885)
Q Consensus 282 ~~~~gs~IivTTR~~~v~~~~~~~~~~~l 310 (885)
. ..|..||++|++.+.+.. .++.+.+
T Consensus 191 ~-~~g~tviivtH~~~~~~~--~d~v~~l 216 (247)
T 2ff7_A 191 I-CKGRTVIIIAHRLSTVKN--ADRIIVM 216 (247)
T ss_dssp H-HTTSEEEEECSSGGGGTT--SSEEEEE
T ss_pred H-cCCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 2 247899999999876643 4444444
No 241
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.46 E-value=0.00046 Score=71.24 Aligned_cols=136 Identities=13% Similarity=0.138 Sum_probs=75.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--cc-EEEEEEEcCcc-----cHHHH----------HHHHHHHcCCC
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FD-LVIWVKVSRDA-----NLEKI----------QESILRRFEIP 232 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~-~~~wv~v~~~~-----~~~~~----------~~~i~~~l~~~ 232 (885)
..+.+++|+|+.|+|||||++.++.-..+..+. |+ .+.|+ .+.. ++.+- ...+++.++..
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~i~~v--~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~l~ 139 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFC--SQNSWIMPGTIKENIIGVSYDEYRYRSVIKACQLE 139 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSCEEEE--CSSCCCCSSBHHHHHHTTCCCHHHHHHHHHHTTCH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEEEE--eCCCccCcccHHHHhhCcccchHHHHHHHHHhChH
Confidence 577899999999999999999998876432111 11 12222 2221 11111 11222222221
Q ss_pred cc---------------ccCCCChhHHHHHHHHHhcCCCeEEEEecCCCcccccccccccc-ccccCCCCCEEEEEcCCh
Q 045686 233 DQ---------------MWIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSDL-LDDSSQTGSKIVFTTRSE 296 (885)
Q Consensus 233 ~~---------------~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~~-l~~~~~~gs~IivTTR~~ 296 (885)
.. ...-+..+...-.+.+.+..++-+++||+.....|......... +......|..||++|++.
T Consensus 140 ~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~ 219 (290)
T 2bbs_A 140 EDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKM 219 (290)
T ss_dssp HHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCH
T ss_pred HHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCH
Confidence 00 00122234444567788888999999999988877543321111 000112478999999998
Q ss_pred hHHhhhcccceeec
Q 045686 297 EVCGEMGARRRFRV 310 (885)
Q Consensus 297 ~v~~~~~~~~~~~l 310 (885)
+.+.. .++.+.+
T Consensus 220 ~~~~~--~d~i~~l 231 (290)
T 2bbs_A 220 EHLKK--ADKILIL 231 (290)
T ss_dssp HHHHH--SSEEEEE
T ss_pred HHHHc--CCEEEEE
Confidence 76643 3444443
No 242
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.46 E-value=0.0012 Score=72.87 Aligned_cols=174 Identities=15% Similarity=0.185 Sum_probs=96.8
Q ss_pred CCccchhHHHHHHHHHhh---c---------CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHH
Q 045686 152 GKTVGLDSIISEVWRCIE---D---------HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLE 219 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~---~---------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 219 (885)
.+++|.++.++++.+.+. . ...+-|.|+|++|+||||||+.+++... ..| +.++++.-...
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~---~~f---~~is~~~~~~~- 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEAN---VPF---FHISGSDFVEL- 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHT---CCE---EEEEGGGTTTC-
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcC---CCe---eeCCHHHHHHH-
Confidence 468899988777766542 1 1234588999999999999999998762 222 23333221100
Q ss_pred HHHHHHHHHcCCCccccCCCChhHHHHHHHHHhcCCCeEEEEecCCCcccc------------cccccccc--ccc-cCC
Q 045686 220 KIQESILRRFEIPDQMWIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDL------------SKVGVSDL--LDD-SSQ 284 (885)
Q Consensus 220 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~------------~~~~~~~~--l~~-~~~ 284 (885)
+.+.........+.......+.+|++|+++....- ......+. +.. ...
T Consensus 89 ----------------~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~ 152 (476)
T 2ce7_A 89 ----------------FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSK 152 (476)
T ss_dssp ----------------CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGG
T ss_pred ----------------HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCC
Confidence 01111222233344455567899999999642110 00000000 000 112
Q ss_pred CCCEEEEEcCChhHHhh--h---cccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCch
Q 045686 285 TGSKIVFTTRSEEVCGE--M---GARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLP 352 (885)
Q Consensus 285 ~gs~IivTTR~~~v~~~--~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP 352 (885)
.+..||.||...+.... . .-...+.++..+.++-.++++.++.......+.+ ...|++.+.|..
T Consensus 153 ~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 153 EGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp GTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred CCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhh----HHHHHHhcCCCc
Confidence 35567777776644221 1 1234678888888888888887775433222222 345788888876
No 243
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.46 E-value=0.00028 Score=74.60 Aligned_cols=131 Identities=17% Similarity=0.182 Sum_probs=80.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCC--Ccc----------------EEEEEEEcCcc------c---------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGH--DFD----------------LVIWVKVSRDA------N--------- 217 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~--~f~----------------~~~wv~v~~~~------~--------- 217 (885)
..+.+++|+|++|+|||||.+.++.-..+..+ .|+ .+.+| .|.+ +
T Consensus 28 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~v--fQ~~~l~p~ltV~eni~~~l 105 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYL--VQEGVLFPHLTVYRNIAYGL 105 (359)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEE--CTTCCCCTTSCHHHHHHTTS
T ss_pred cCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEE--eCCCcCCCCCCHHHHHHHHH
Confidence 56789999999999999999999886543211 011 11222 1211 1
Q ss_pred ---------HHHHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccc-c
Q 045686 218 ---------LEKIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDD-S 282 (885)
Q Consensus 218 ---------~~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~-~ 282 (885)
..+-..++++.+++.... ..-+..+...-.+.+.|..++-+|+||+..+..|........ .+.. .
T Consensus 106 ~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~ 185 (359)
T 3fvq_A 106 GNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAAL 185 (359)
T ss_dssp TTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred HHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 122345667777764321 112334455556888899999999999998887754321111 0111 2
Q ss_pred CCCCCEEEEEcCChhHHhhhc
Q 045686 283 SQTGSKIVFTTRSEEVCGEMG 303 (885)
Q Consensus 283 ~~~gs~IivTTR~~~v~~~~~ 303 (885)
...|..||++|++.+.+..+.
T Consensus 186 ~~~g~tvi~vTHd~~ea~~~a 206 (359)
T 3fvq_A 186 RANGKSAVFVSHDREEALQYA 206 (359)
T ss_dssp HHTTCEEEEECCCHHHHHHHC
T ss_pred HhCCCEEEEEeCCHHHHHHHC
Confidence 345889999999987766543
No 244
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.45 E-value=0.00037 Score=74.28 Aligned_cols=131 Identities=17% Similarity=0.176 Sum_probs=79.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--c------------cEEEEEEEcCcc------c-------------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--F------------DLVIWVKVSRDA------N------------- 217 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f------------~~~~wv~v~~~~------~------------- 217 (885)
..+.+++|+|++|+|||||.+.++.-..+..+. | ..+.+| .|.+ +
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~V--fQ~~~l~p~ltV~eni~~~~~~~~ 104 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMV--FQSYALYPHLSVAENMSFGLKLAG 104 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEE--CTTCCCCTTSCHHHHHTHHHHHTT
T ss_pred CCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEE--ecCCcCCCCCCHHHHHHHHHHHcC
Confidence 567899999999999999999998866432110 1 012222 2211 1
Q ss_pred -----HHHHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCcccccccccc-cccccc-CCCC
Q 045686 218 -----LEKIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVS-DLLDDS-SQTG 286 (885)
Q Consensus 218 -----~~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~-~~l~~~-~~~g 286 (885)
..+...++++.+++.... ..-+..+...-.|.+.|..++-+|+||+..+..|....... ..+... ...|
T Consensus 105 ~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g 184 (381)
T 3rlf_A 105 AKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLG 184 (381)
T ss_dssp CCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCC
Confidence 122345677777764321 11223445555678888889999999999887765422111 111111 2337
Q ss_pred CEEEEEcCChhHHhhhc
Q 045686 287 SKIVFTTRSEEVCGEMG 303 (885)
Q Consensus 287 s~IivTTR~~~v~~~~~ 303 (885)
..||++|++.+.+..+.
T Consensus 185 ~tii~vTHd~~ea~~~a 201 (381)
T 3rlf_A 185 RTMIYVTHDQVEAMTLA 201 (381)
T ss_dssp CEEEEECSCHHHHHHHC
T ss_pred CEEEEEECCHHHHHHhC
Confidence 89999999987665543
No 245
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.45 E-value=0.00041 Score=73.40 Aligned_cols=131 Identities=21% Similarity=0.268 Sum_probs=79.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--c------------cEEEEEEEcCcc------cH------------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--F------------DLVIWVKVSRDA------NL------------ 218 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f------------~~~~wv~v~~~~------~~------------ 218 (885)
..+.+++|+|++|+|||||.+.++.-..+..+. | ..+.+| .+.+ ++
T Consensus 39 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v--~Q~~~l~~~ltv~eni~~~l~~~~ 116 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLV--FQNYALFQHMTVYDNVSFGLREKR 116 (355)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEE--CGGGCCCTTSCHHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEE--ecCcccCCCCCHHHHHHHHHHHcC
Confidence 567899999999999999999998765431110 1 112222 2211 11
Q ss_pred ------HHHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-ccccc-CCCC
Q 045686 219 ------EKIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDS-SQTG 286 (885)
Q Consensus 219 ------~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~-~~~g 286 (885)
.+...++++.+++.... ..-+..+...-.+.+.|..++-+|+||+..+..|........ .+... ...|
T Consensus 117 ~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g 196 (355)
T 1z47_A 117 VPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMG 196 (355)
T ss_dssp CCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 12345567777764311 112334455557888899999999999998877654321111 11111 2237
Q ss_pred CEEEEEcCChhHHhhhc
Q 045686 287 SKIVFTTRSEEVCGEMG 303 (885)
Q Consensus 287 s~IivTTR~~~v~~~~~ 303 (885)
..||++|++.+.+..+.
T Consensus 197 ~tvi~vTHd~~~a~~~a 213 (355)
T 1z47_A 197 VTSVFVTHDQEEALEVA 213 (355)
T ss_dssp CEEEEECSCHHHHHHHC
T ss_pred CEEEEECCCHHHHHHhC
Confidence 88999999987765543
No 246
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.44 E-value=0.00072 Score=69.19 Aligned_cols=136 Identities=21% Similarity=0.245 Sum_probs=76.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--c--------------cEEEEEEEcCcc-----cHH----------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--F--------------DLVIWVKVSRDA-----NLE---------- 219 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f--------------~~~~wv~v~~~~-----~~~---------- 219 (885)
..+.+++|+|+.|+|||||++.++.-..+..+. + ..+.|+ .+.. ++.
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v--~Q~~~l~~~tv~enl~~~~~~~ 120 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAV--GQEPLLFGRSFRENIAYGLTRT 120 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEE--CSSCCCCSSBHHHHHHTTCSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccEEEE--ecCCccccccHHHHHhhhcccC
Confidence 678899999999999999999998765431110 0 012333 2211 111
Q ss_pred ----HH--------HHHHHHHc--CCCcc----ccCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-ccc
Q 045686 220 ----KI--------QESILRRF--EIPDQ----MWIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLD 280 (885)
Q Consensus 220 ----~~--------~~~i~~~l--~~~~~----~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~ 280 (885)
.+ +.++++.+ ++... ...-+..+...-.+.+.|..++-+|+||+.....|........ .+.
T Consensus 121 ~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~ 200 (271)
T 2ixe_A 121 PTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLY 200 (271)
T ss_dssp CCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHH
Confidence 10 11233333 22110 0011223444456778888899999999999887754432111 111
Q ss_pred cc-CCCCCEEEEEcCChhHHhhhcccceeec
Q 045686 281 DS-SQTGSKIVFTTRSEEVCGEMGARRRFRV 310 (885)
Q Consensus 281 ~~-~~~gs~IivTTR~~~v~~~~~~~~~~~l 310 (885)
.. ...|..||++|++.+.+.. .++++.+
T Consensus 201 ~~~~~~g~tviivtHd~~~~~~--~d~v~~l 229 (271)
T 2ixe_A 201 ESPEWASRTVLLITQQLSLAER--AHHILFL 229 (271)
T ss_dssp HCTTTTTSEEEEECSCHHHHTT--CSEEEEE
T ss_pred HHHhhcCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 12 2347899999999877653 4444444
No 247
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.43 E-value=0.00095 Score=79.75 Aligned_cols=155 Identities=15% Similarity=0.181 Sum_probs=90.4
Q ss_pred CCccchhHHHHHHHHHhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhccCCC---CccEEEEE-EEcCcccHHHHHHHHHH
Q 045686 152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGH---DFDLVIWV-KVSRDANLEKIQESILR 227 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~---~f~~~~wv-~v~~~~~~~~~~~~i~~ 227 (885)
.+++||+.+++.+.+.|......-+.|+|++|+||||+|+.+++......- .....+|. ..+. + .
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~------l----~- 254 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGS------L----L- 254 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC--------------
T ss_pred CCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHH------H----h-
Confidence 468999999999999998767777889999999999999999987632100 11222221 1110 0 0
Q ss_pred HcCCCccccCCCChhHHHHHHHHHhc-CCCeEEEEecCCCccc--------cc--cccccccccccCCCCCEEEEEcCCh
Q 045686 228 RFEIPDQMWIGKDEDGRANEILSNLR-GKKFVLLLDDVWERLD--------LS--KVGVSDLLDDSSQTGSKIVFTTRSE 296 (885)
Q Consensus 228 ~l~~~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVLDdv~~~~~--------~~--~~~~~~~l~~~~~~gs~IivTTR~~ 296 (885)
.+.. .....+.....+.+.+. .++.+|++||+..... .+ ...... ....+..+|.+|...
T Consensus 255 -~~~~----~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~----l~~~~~~~I~at~~~ 325 (758)
T 1r6b_X 255 -AGTK----YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPL----LSSGKIRVIGSTTYQ 325 (758)
T ss_dssp -CCCC----CSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSC----SSSCCCEEEEEECHH
T ss_pred -cccc----ccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHH----HhCCCeEEEEEeCch
Confidence 0000 11233444444444443 4578999999975411 00 111111 123345677766654
Q ss_pred hHHhhh-------cccceeeccCCChHHHHHHHHHHh
Q 045686 297 EVCGEM-------GARRRFRVECLSPEAALDLFRYKV 326 (885)
Q Consensus 297 ~v~~~~-------~~~~~~~l~~L~~~~~~~Lf~~~~ 326 (885)
+..... .-...+.+...+.++..+++...+
T Consensus 326 ~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 326 EFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp HHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred HHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 432111 111358899999999999987655
No 248
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.43 E-value=0.00061 Score=69.24 Aligned_cols=126 Identities=13% Similarity=0.182 Sum_probs=75.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--cc-----------EEEEEEEcCcc----cH--------------H
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FD-----------LVIWVKVSRDA----NL--------------E 219 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~-----------~~~wv~v~~~~----~~--------------~ 219 (885)
. +.+++|+|+.|+|||||.+.++.-. +..+. ++ .+.| .+.+.+ ++ .
T Consensus 29 ~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~-~v~Q~~~l~~tv~enl~~~~~~~~~~~ 105 (263)
T 2pjz_A 29 N-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYST-NLPEAYEIGVTVNDIVYLYEELKGLDR 105 (263)
T ss_dssp C-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEE-CCGGGSCTTSBHHHHHHHHHHHTCCCH
T ss_pred C-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEE-EeCCCCccCCcHHHHHHHhhhhcchHH
Confidence 5 7899999999999999999998765 32111 11 1220 222321 11 1
Q ss_pred HHHHHHHHHcCCC-ccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCCCCCEEEEEc
Q 045686 220 KIQESILRRFEIP-DQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQTGSKIVFTT 293 (885)
Q Consensus 220 ~~~~~i~~~l~~~-~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~gs~IivTT 293 (885)
+...++++.+++. ... ..-+..+...-.+.+.+..++-+++||+..+..|........ .+. ... . .||++|
T Consensus 106 ~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~-~~~-~-tviivt 182 (263)
T 2pjz_A 106 DLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIK-EYG-K-EGILVT 182 (263)
T ss_dssp HHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHH-HSC-S-EEEEEE
T ss_pred HHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHH-Hhc-C-cEEEEE
Confidence 2234667777776 311 112234445556788888999999999999887754432111 111 111 2 899999
Q ss_pred CChhHHhhh
Q 045686 294 RSEEVCGEM 302 (885)
Q Consensus 294 R~~~v~~~~ 302 (885)
++.+.+...
T Consensus 183 Hd~~~~~~~ 191 (263)
T 2pjz_A 183 HELDMLNLY 191 (263)
T ss_dssp SCGGGGGGC
T ss_pred cCHHHHHHh
Confidence 997665443
No 249
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.42 E-value=0.0005 Score=73.38 Aligned_cols=132 Identities=17% Similarity=0.145 Sum_probs=79.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--c------------cEEEEEE----------EcCc---------cc
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--F------------DLVIWVK----------VSRD---------AN 217 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f------------~~~~wv~----------v~~~---------~~ 217 (885)
..+.+++|+|++|+|||||.+.++.-..+..+. | ..+.+|. |.+. ..
T Consensus 35 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~ 114 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFP 114 (372)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC--CCC
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCC
Confidence 567899999999999999999998765421110 0 1122221 0000 01
Q ss_pred ---HHHHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-ccccc-CCCCCE
Q 045686 218 ---LEKIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDS-SQTGSK 288 (885)
Q Consensus 218 ---~~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~-~~~gs~ 288 (885)
..+...++++.+++.... ..-+..+...-.+.+.|..++-+|+||+..+..|........ .+... ...|..
T Consensus 115 ~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~t 194 (372)
T 1v43_A 115 KDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVT 194 (372)
T ss_dssp HHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCE
T ss_pred HHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCE
Confidence 122345677777764321 122345556667888999999999999998877654321110 11111 223788
Q ss_pred EEEEcCChhHHhhh
Q 045686 289 IVFTTRSEEVCGEM 302 (885)
Q Consensus 289 IivTTR~~~v~~~~ 302 (885)
||++|++.+.+..+
T Consensus 195 vi~vTHd~~~a~~~ 208 (372)
T 1v43_A 195 TIYVTHDQVEAMTM 208 (372)
T ss_dssp EEEEESCHHHHHHH
T ss_pred EEEEeCCHHHHHHh
Confidence 99999998766554
No 250
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.42 E-value=9e-05 Score=68.00 Aligned_cols=45 Identities=20% Similarity=0.215 Sum_probs=34.3
Q ss_pred CccchhHHHHHHHHHhhc--CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 045686 153 KTVGLDSIISEVWRCIED--HNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 153 ~~vgr~~~~~~l~~~L~~--~~~~vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
.++|++..++++.+.+.. ....-|.|+|++|+|||++|+.+++..
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 478999999988888743 334457799999999999999998754
No 251
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.41 E-value=0.00047 Score=73.24 Aligned_cols=130 Identities=22% Similarity=0.271 Sum_probs=78.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--c------------cEEEEEEEcCcc------cH------------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--F------------DLVIWVKVSRDA------NL------------ 218 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f------------~~~~wv~v~~~~------~~------------ 218 (885)
..+.+++|+|++|+|||||.+.++.-..+..+. + ..+.+| .|.+ ++
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v--~Q~~~l~~~ltv~eni~~~~~~~~ 104 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLV--FQNWALYPHMTVYKNIAFPLELRK 104 (362)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEE--CTTCCCCTTSCHHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEE--ecCcccCCCCCHHHHHHHHHHhcC
Confidence 567899999999999999999998765431110 1 112222 2211 11
Q ss_pred ------HHHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-ccccc-CCCC
Q 045686 219 ------EKIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDS-SQTG 286 (885)
Q Consensus 219 ------~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~-~~~g 286 (885)
.+...++++.+++.... ..-+..+...-.+.+.+..++-+++||+..+..|........ .+... ...|
T Consensus 105 ~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g 184 (362)
T 2it1_A 105 APREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELG 184 (362)
T ss_dssp CCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCC
Confidence 12244567777765321 112234455556888899999999999998876654321111 11111 2237
Q ss_pred CEEEEEcCChhHHhhh
Q 045686 287 SKIVFTTRSEEVCGEM 302 (885)
Q Consensus 287 s~IivTTR~~~v~~~~ 302 (885)
..||++|++.+.+..+
T Consensus 185 ~tvi~vTHd~~~a~~~ 200 (362)
T 2it1_A 185 ITTVYVTHDQAEALAM 200 (362)
T ss_dssp CEEEEEESCHHHHHHH
T ss_pred CEEEEECCCHHHHHHh
Confidence 8899999998766544
No 252
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.41 E-value=0.0002 Score=72.28 Aligned_cols=129 Identities=18% Similarity=0.265 Sum_probs=74.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--cc--------------EEEEEEEcCcc------cH----------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FD--------------LVIWVKVSRDA------NL---------- 218 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~--------------~~~wv~v~~~~------~~---------- 218 (885)
..+.+++|+|+.|+|||||++.++.-..+. +. |+ .+.|+. +.. ++
T Consensus 24 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~--q~~~~~~~~tv~e~l~~~~~~ 100 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYLS--QQQTPPFATPVWHYLTLHQHD 100 (249)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEEC--SCCCCCTTCBHHHHHHTTCSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEEC--CCCccCCCCcHHHHHHHhhcc
Confidence 467899999999999999999998765321 11 00 122221 111 11
Q ss_pred ---HHHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCe-------EEEEecCCCccccccccccc-cccccC
Q 045686 219 ---EKIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKF-------VLLLDDVWERLDLSKVGVSD-LLDDSS 283 (885)
Q Consensus 219 ---~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~-------LlVLDdv~~~~~~~~~~~~~-~l~~~~ 283 (885)
.+...++++.+++.... ..-+..+...-.+.+.+..++- +++||+..+..|........ .+....
T Consensus 101 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~ 180 (249)
T 2qi9_C 101 KTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALS 180 (249)
T ss_dssp TTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHH
Confidence 22345667777764311 0112233344456666655555 99999999887754332111 111122
Q ss_pred CCCCEEEEEcCChhHHhhh
Q 045686 284 QTGSKIVFTTRSEEVCGEM 302 (885)
Q Consensus 284 ~~gs~IivTTR~~~v~~~~ 302 (885)
..|..||++|++.+.+...
T Consensus 181 ~~g~tviivtHd~~~~~~~ 199 (249)
T 2qi9_C 181 QQGLAIVMSSHDLNHTLRH 199 (249)
T ss_dssp HTTCEEEEECSCHHHHHHH
T ss_pred hCCCEEEEEeCCHHHHHHh
Confidence 2378899999998765443
No 253
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.41 E-value=0.00022 Score=71.50 Aligned_cols=129 Identities=16% Similarity=0.178 Sum_probs=75.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--cc------------EEEEEEEcCcc------cH------------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FD------------LVIWVKVSRDA------NL------------ 218 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~------------~~~wv~v~~~~------~~------------ 218 (885)
.+ .+++|+|+.|+|||||.+.++.-..+..+. ++ .+.|+ .+.. ++
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v--~q~~~l~~~ltv~enl~~~~~~~~ 99 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFV--PQDYALFPHLSVYRNIAYGLRNVE 99 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCC--CSSCCCCTTSCHHHHHHTTCTTSC
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEE--cCCCccCCCCcHHHHHHHHHHHcC
Confidence 56 899999999999999999998765321110 00 11111 1110 11
Q ss_pred ----HHHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-ccccc-CCCCCE
Q 045686 219 ----EKIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDS-SQTGSK 288 (885)
Q Consensus 219 ----~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~-~~~gs~ 288 (885)
.+...++++.+++.... ..-+..+...-.+.+.+..++-+++||+.....|........ .+... ...|..
T Consensus 100 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~t 179 (240)
T 2onk_A 100 RVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVP 179 (240)
T ss_dssp HHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCC
T ss_pred CchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCE
Confidence 12344567777764311 012234445556788888999999999999887754331111 11111 123678
Q ss_pred EEEEcCChhHHhhh
Q 045686 289 IVFTTRSEEVCGEM 302 (885)
Q Consensus 289 IivTTR~~~v~~~~ 302 (885)
||++|++.+.+...
T Consensus 180 vi~vtHd~~~~~~~ 193 (240)
T 2onk_A 180 ILHVTHDLIEAAML 193 (240)
T ss_dssp EEEEESCHHHHHHH
T ss_pred EEEEeCCHHHHHHh
Confidence 99999997655443
No 254
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.36 E-value=0.00025 Score=72.18 Aligned_cols=129 Identities=12% Similarity=0.088 Sum_probs=75.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--c---------------cEEEEEEEcCcc------c----------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--F---------------DLVIWVKVSRDA------N---------- 217 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f---------------~~~~wv~v~~~~------~---------- 217 (885)
..+.+++|+|+.|+|||||.+.++.-..+..+. + ..+.++. +.. +
T Consensus 31 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~--q~~~l~~~~tv~enl~~~~~ 108 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTF--QTPQPLKEMTVLENLLIGEI 108 (257)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECC--CCCGGGGGSBHHHHHHGGGT
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEc--cCCccCCCCcHHHHHHHHHh
Confidence 467899999999999999999998765321110 0 0122221 110 0
Q ss_pred ---------------------HHHHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCcccccc
Q 045686 218 ---------------------LEKIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSK 272 (885)
Q Consensus 218 ---------------------~~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~ 272 (885)
......++++.+++.... ..-+..+...-.+.+.+..++-+++||+..+..|...
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~ 188 (257)
T 1g6h_A 109 CPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGL 188 (257)
T ss_dssp STTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHH
T ss_pred hhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHH
Confidence 112234556666654211 0112234444567778888899999999998877643
Q ss_pred ccccc-cccccCCCCCEEEEEcCChhHHhh
Q 045686 273 VGVSD-LLDDSSQTGSKIVFTTRSEEVCGE 301 (885)
Q Consensus 273 ~~~~~-~l~~~~~~gs~IivTTR~~~v~~~ 301 (885)
..... .+......|..||++|++.+.+..
T Consensus 189 ~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~ 218 (257)
T 1g6h_A 189 AHDIFNHVLELKAKGITFLIIEHRLDIVLN 218 (257)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECSCCSTTGG
T ss_pred HHHHHHHHHHHHHCCCEEEEEecCHHHHHH
Confidence 31111 111122237899999999765543
No 255
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.35 E-value=0.00086 Score=68.18 Aligned_cols=134 Identities=14% Similarity=0.167 Sum_probs=74.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--c--------------cEEEEEEEcCcc-----cH-----------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--F--------------DLVIWVKVSRDA-----NL----------- 218 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f--------------~~~~wv~v~~~~-----~~----------- 218 (885)
.++.+++|+|+.|+|||||++.++.-.... +. + ..+.|+ .+.+ ++
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~-G~I~i~g~~i~~~~~~~~~~~i~~v--~Q~~~l~~~tv~enl~~~~~~~ 120 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYRFYDAE-GDIKIGGKNVNKYNRNSIRSIIGIV--PQDTILFNETIKYNILYGKLDA 120 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGBCHHHHHTTEEEE--CSSCCCCSEEHHHHHHTTCTTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccCCCC-eEEEECCEEhhhcCHHHHhccEEEE--cCCCcccccCHHHHHhccCCCC
Confidence 577899999999999999999998765310 10 0 012222 1211 11
Q ss_pred -HHHHHHHHHHcCCCc---------------cccCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccc
Q 045686 219 -EKIQESILRRFEIPD---------------QMWIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDD 281 (885)
Q Consensus 219 -~~~~~~i~~~l~~~~---------------~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~ 281 (885)
.+-..+.++.+++.. ....-+..+...-.+.+.+..++-+++||+.....|........ .+..
T Consensus 121 ~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~ 200 (260)
T 2ghi_A 121 TDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVED 200 (260)
T ss_dssp CHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHH
Confidence 111223333333210 00012223444446777888888999999999887754331111 1111
Q ss_pred cCCCCCEEEEEcCChhHHhhhcccceeec
Q 045686 282 SSQTGSKIVFTTRSEEVCGEMGARRRFRV 310 (885)
Q Consensus 282 ~~~~gs~IivTTR~~~v~~~~~~~~~~~l 310 (885)
. ..|..||++|++.+.+.. .++.+.+
T Consensus 201 l-~~~~tviivtH~~~~~~~--~d~i~~l 226 (260)
T 2ghi_A 201 L-RKNRTLIIIAHRLSTISS--AESIILL 226 (260)
T ss_dssp H-TTTSEEEEECSSGGGSTT--CSEEEEE
T ss_pred h-cCCCEEEEEcCCHHHHHh--CCEEEEE
Confidence 2 236789999999876542 4444444
No 256
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.35 E-value=0.00063 Score=77.72 Aligned_cols=132 Identities=15% Similarity=0.139 Sum_probs=80.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCcc-------------E--------------EEEEEEcCcc-------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFD-------------L--------------VIWVKVSRDA------- 216 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~-------------~--------------~~wv~v~~~~------- 216 (885)
.++.+++|+|+.|+|||||.+.+.....+..+.+. . ...+...+..
T Consensus 101 ~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (608)
T 3j16_B 101 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAI 180 (608)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECCCTTTHHHHC
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhchhhhhhhhhhh
Confidence 46789999999999999999999876644322220 0 0000000000
Q ss_pred ----------------cHHHHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCcccccccccc
Q 045686 217 ----------------NLEKIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVS 276 (885)
Q Consensus 217 ----------------~~~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~ 276 (885)
.......++++.+++.... ..-+..+...-.+.+.+..++-+++||+..+..|.......
T Consensus 181 ~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l 260 (608)
T 3j16_B 181 KGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNA 260 (608)
T ss_dssp SSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHH
T ss_pred cchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHH
Confidence 0113355677777765421 11223444555678888889999999999988776533111
Q ss_pred c-cccccCCCCCEEEEEcCChhHHhhh
Q 045686 277 D-LLDDSSQTGSKIVFTTRSEEVCGEM 302 (885)
Q Consensus 277 ~-~l~~~~~~gs~IivTTR~~~v~~~~ 302 (885)
. .+......|..||++|++.+.+..+
T Consensus 261 ~~~l~~l~~~g~tvi~vtHdl~~~~~~ 287 (608)
T 3j16_B 261 AQIIRSLLAPTKYVICVEHDLSVLDYL 287 (608)
T ss_dssp HHHHHGGGTTTCEEEEECSCHHHHHHH
T ss_pred HHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence 1 1111234477899999998877654
No 257
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.35 E-value=0.00051 Score=72.90 Aligned_cols=130 Identities=22% Similarity=0.251 Sum_probs=78.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--c------------cEEEEEEEcCcc------cH------------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--F------------DLVIWVKVSRDA------NL------------ 218 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f------------~~~~wv~v~~~~------~~------------ 218 (885)
..+.+++|+|++|+|||||.+.++.-..+..+. | ..+.+| .|.+ ++
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v--~Q~~~l~~~ltv~eni~~~~~~~~ 104 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMV--FQNYALYPHMTVFENIAFPLRARR 104 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEE--CSSCCCCTTSCHHHHHHGGGSSSC
T ss_pred cCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEE--ecCcccCCCCCHHHHHHHHHHhcC
Confidence 567899999999999999999998765431110 1 112222 1211 11
Q ss_pred ------HHHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-ccccc-CCCC
Q 045686 219 ------EKIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDS-SQTG 286 (885)
Q Consensus 219 ------~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~-~~~g 286 (885)
.+...++++.+++.... ..-+..+...-.+.+.+..++-+|+||+..+..|........ .+... ...|
T Consensus 105 ~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g 184 (359)
T 2yyz_A 105 ISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELG 184 (359)
T ss_dssp SHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 12345677777764321 112334455556888899999999999998877654321110 11111 2237
Q ss_pred CEEEEEcCChhHHhhh
Q 045686 287 SKIVFTTRSEEVCGEM 302 (885)
Q Consensus 287 s~IivTTR~~~v~~~~ 302 (885)
..||++|++.+.+..+
T Consensus 185 ~tvi~vTHd~~~~~~~ 200 (359)
T 2yyz_A 185 ITSVYVTHDQAEAMTM 200 (359)
T ss_dssp CEEEEEESCHHHHHHH
T ss_pred CEEEEEcCCHHHHHHh
Confidence 8899999998766554
No 258
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.33 E-value=0.00035 Score=72.52 Aligned_cols=67 Identities=13% Similarity=0.113 Sum_probs=40.2
Q ss_pred hhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCCCCCEEEEEcCChhHHhhhcccceeec
Q 045686 241 EDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQTGSKIVFTTRSEEVCGEMGARRRFRV 310 (885)
Q Consensus 241 ~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~gs~IivTTR~~~v~~~~~~~~~~~l 310 (885)
.+...-.|.+.+-.++-+||||+..+..|........ .+. .-..+..||++|++...+.. .++++.|
T Consensus 194 GqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~-~l~~~~Tvi~itH~l~~~~~--aD~i~vl 261 (306)
T 3nh6_A 194 GEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLA-KVCANRTTIVVAHRLSTVVN--ADQILVI 261 (306)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHH-HHHTTSEEEEECCSHHHHHT--CSEEEEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHH-HHcCCCEEEEEEcChHHHHc--CCEEEEE
Confidence 3344445777777788899999998877654321111 111 11235688889998776654 4444444
No 259
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.33 E-value=0.00066 Score=71.79 Aligned_cols=130 Identities=17% Similarity=0.190 Sum_probs=78.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--ccE------------EEEEEEcCcc------cHH-----------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FDL------------VIWVKVSRDA------NLE----------- 219 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~~------------~~wv~v~~~~------~~~----------- 219 (885)
..+.+++|+|++|+|||||.+.++.-..+..+. ++. +.+ +.+.+ ++.
T Consensus 24 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~--v~Q~~~l~~~ltv~enl~~~~~~~~ 101 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAF--VYQNYSLFPHMNVKKNLEFGMRMKK 101 (348)
T ss_dssp CTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEE--ECTTCCCCTTSCHHHHHHHHHHHHC
T ss_pred cCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEE--EecCcccCCCCCHHHHHHHHHHHcC
Confidence 567899999999999999999998765432110 110 112 22221 111
Q ss_pred ----HHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-ccccc-CCCCCEE
Q 045686 220 ----KIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDS-SQTGSKI 289 (885)
Q Consensus 220 ----~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~-~~~gs~I 289 (885)
+...++++.+++.... ..-+..+...-.+.+.+..++-+|+||+..+..|........ .+... ...|..|
T Consensus 102 ~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~ti 181 (348)
T 3d31_A 102 IKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTV 181 (348)
T ss_dssp CCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred CCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 2234567777764321 112234455557888999999999999998877654321111 11111 2347889
Q ss_pred EEEcCChhHHhhh
Q 045686 290 VFTTRSEEVCGEM 302 (885)
Q Consensus 290 ivTTR~~~v~~~~ 302 (885)
|++|++.+.+..+
T Consensus 182 i~vTHd~~~~~~~ 194 (348)
T 3d31_A 182 LHITHDQTEARIM 194 (348)
T ss_dssp EEEESCHHHHHHH
T ss_pred EEEeCCHHHHHHh
Confidence 9999998766544
No 260
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=97.31 E-value=0.0006 Score=72.39 Aligned_cols=130 Identities=18% Similarity=0.248 Sum_probs=79.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--cc-----------------EEEEEEEcCcc------c--------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FD-----------------LVIWVKVSRDA------N-------- 217 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~-----------------~~~wv~v~~~~------~-------- 217 (885)
..+.+++|+|++|+|||||.+.++.-..+..+. ++ .+.+|. +.+ +
T Consensus 29 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~--Q~~~l~~~ltv~eni~~~ 106 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVF--QTWALYPNLTAFENIAFP 106 (353)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEE--TTSCCCTTSCHHHHHHGG
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEe--CCCccCCCCCHHHHHHHH
Confidence 567899999999999999999998765432110 11 122222 111 1
Q ss_pred ----------HHHHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-ccccc
Q 045686 218 ----------LEKIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDS 282 (885)
Q Consensus 218 ----------~~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~ 282 (885)
..+...++++.+++.... ..-+..+...-.+.+.|..++-+++||+..+..|........ .+...
T Consensus 107 ~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l 186 (353)
T 1oxx_K 107 LTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEV 186 (353)
T ss_dssp GTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 122345677777764321 112334455556888899999999999998877754331111 11111
Q ss_pred -CCCCCEEEEEcCChhHHhhh
Q 045686 283 -SQTGSKIVFTTRSEEVCGEM 302 (885)
Q Consensus 283 -~~~gs~IivTTR~~~v~~~~ 302 (885)
...|..||++|++.+.+..+
T Consensus 187 ~~~~g~tvi~vTHd~~~~~~~ 207 (353)
T 1oxx_K 187 QSRLGVTLLVVSHDPADIFAI 207 (353)
T ss_dssp HHHHCCEEEEEESCHHHHHHH
T ss_pred HHhcCCEEEEEeCCHHHHHHh
Confidence 22378899999998766554
No 261
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.26 E-value=0.00056 Score=77.18 Aligned_cols=132 Identities=16% Similarity=0.151 Sum_probs=79.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCc-------------c--------------EEEEEEEcCcc-------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDF-------------D--------------LVIWVKVSRDA------- 216 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f-------------~--------------~~~wv~v~~~~------- 216 (885)
.++.+++|+|+.|+|||||.+.++....+..+.. . ........+..
T Consensus 23 ~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (538)
T 3ozx_A 23 KNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFL 102 (538)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGGTTC
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhhhhc
Confidence 4678999999999999999999988654322211 0 00011111110
Q ss_pred --cHHH---------HHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-ccc
Q 045686 217 --NLEK---------IQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLD 280 (885)
Q Consensus 217 --~~~~---------~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~ 280 (885)
.... ...++++.+++.... ..-+..+...-.|.+.+..++-+|+||+..+..|........ .+.
T Consensus 103 ~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~ 182 (538)
T 3ozx_A 103 KGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIR 182 (538)
T ss_dssp CSBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHH
T ss_pred cCcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHH
Confidence 1111 235667777764321 112234455556888899999999999999887765431111 111
Q ss_pred ccCCCCCEEEEEcCChhHHhhhc
Q 045686 281 DSSQTGSKIVFTTRSEEVCGEMG 303 (885)
Q Consensus 281 ~~~~~gs~IivTTR~~~v~~~~~ 303 (885)
.... |..||++|++.+.+..+.
T Consensus 183 ~l~~-g~tii~vsHdl~~~~~~~ 204 (538)
T 3ozx_A 183 ELLK-NKYVIVVDHDLIVLDYLT 204 (538)
T ss_dssp HHCT-TSEEEEECSCHHHHHHHC
T ss_pred HHhC-CCEEEEEEeChHHHHhhC
Confidence 1222 788999999987766553
No 262
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.23 E-value=0.00091 Score=71.48 Aligned_cols=131 Identities=16% Similarity=0.173 Sum_probs=78.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--ccE------------------EEEEEEcCcc------cH------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FDL------------------VIWVKVSRDA------NL------ 218 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~~------------------~~wv~v~~~~------~~------ 218 (885)
..+.+++|+|++|+|||||.+.++.-..+..+. ++. +.+| .|.+ ++
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v--~Q~~~l~~~ltv~eni~~ 104 (372)
T 1g29_1 27 KDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMV--FQSYALYPHMTVYDNIAF 104 (372)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEE--CSCCCCCTTSCHHHHHHH
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCCEEEE--eCCCccCCCCCHHHHHHH
Confidence 467899999999999999999998765432110 111 1222 2211 11
Q ss_pred ------------HHHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccc
Q 045686 219 ------------EKIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDD 281 (885)
Q Consensus 219 ------------~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~ 281 (885)
.+...++++.+++.... ..-+..+...-.+.+.|..++-+|+||+..+..|........ .+..
T Consensus 105 ~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~ 184 (372)
T 1g29_1 105 PLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKK 184 (372)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHH
Confidence 12234566666664311 112334455556888899999999999998877654321111 1111
Q ss_pred c-CCCCCEEEEEcCChhHHhhhc
Q 045686 282 S-SQTGSKIVFTTRSEEVCGEMG 303 (885)
Q Consensus 282 ~-~~~gs~IivTTR~~~v~~~~~ 303 (885)
. ...|..||++|++.+.+..+.
T Consensus 185 l~~~~g~tvi~vTHd~~~a~~~a 207 (372)
T 1g29_1 185 LQRQLGVTTIYVTHDQVEAMTMG 207 (372)
T ss_dssp HHHHHTCEEEEEESCHHHHHHHC
T ss_pred HHHhcCCEEEEECCCHHHHHHhC
Confidence 1 223788999999987665543
No 263
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.23 E-value=0.00071 Score=64.41 Aligned_cols=24 Identities=46% Similarity=0.610 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhc
Q 045686 175 VIGLYGMGGVGKTTLLKKLNNKFR 198 (885)
Q Consensus 175 vi~I~G~gG~GKTtLa~~v~~~~~ 198 (885)
.++|+|++|+|||||++.++....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999988763
No 264
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.20 E-value=0.0058 Score=64.81 Aligned_cols=174 Identities=16% Similarity=0.182 Sum_probs=93.3
Q ss_pred CCccchhHHHHHHHHHhhc-----CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHH
Q 045686 152 GKTVGLDSIISEVWRCIED-----HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESIL 226 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~-----~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~ 226 (885)
..++|.+..++.+...+.. .....+.++|++|+||||||+.+++... ..|. ... ....
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~---~~~~---~~s-g~~~---------- 87 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQ---TNIH---VTS-GPVL---------- 87 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHT---CCEE---EEE-TTTC----------
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhC---CCEE---EEe-chHh----------
Confidence 5678988888887766643 3447799999999999999999999862 2221 111 1100
Q ss_pred HHcCCCccccCCCChhHHHHHHHHHhcCCCeEEEEecCCCccc--ccccccccc---cc----cc--------CCCCCEE
Q 045686 227 RRFEIPDQMWIGKDEDGRANEILSNLRGKKFVLLLDDVWERLD--LSKVGVSDL---LD----DS--------SQTGSKI 289 (885)
Q Consensus 227 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~--~~~~~~~~~---l~----~~--------~~~gs~I 289 (885)
....+.. .+...+ .++-++++|++..... .+.+..... .. .. .-....+
T Consensus 88 ------------~~~~~l~-~~~~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~l 153 (334)
T 1in4_A 88 ------------VKQGDMA-AILTSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTL 153 (334)
T ss_dssp ------------CSHHHHH-HHHHHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEE
T ss_pred ------------cCHHHHH-HHHHHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEE
Confidence 0011111 111111 2345677787753211 000000000 00 00 0001222
Q ss_pred E-EEcCChhHHhhhc--ccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCchhHHHHHH
Q 045686 290 V-FTTRSEEVCGEMG--ARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPLALVTIG 359 (885)
Q Consensus 290 i-vTTR~~~v~~~~~--~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~ 359 (885)
+ .|++...+...+. ....+.+++.+.++-.+++.+.+.......+ .+.+..|++.++|.|-.+..+.
T Consensus 154 i~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~---~~~~~~ia~~~~G~~R~a~~ll 223 (334)
T 1in4_A 154 VGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIE---DAAAEMIAKRSRGTPRIAIRLT 223 (334)
T ss_dssp EEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBC---HHHHHHHHHTSTTCHHHHHHHH
T ss_pred EEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCCcC---HHHHHHHHHhcCCChHHHHHHH
Confidence 2 3455443322221 1235789999999999999887743222222 3458899999999997654433
No 265
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.17 E-value=1.8e-05 Score=75.34 Aligned_cols=131 Identities=11% Similarity=0.029 Sum_probs=63.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCC-CccEEEEEEEcCcccH---HHHHHHH---HHHcCCCcc-c--cCCCC
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGH-DFDLVIWVKVSRDANL---EKIQESI---LRRFEIPDQ-M--WIGKD 240 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~-~f~~~~wv~v~~~~~~---~~~~~~i---~~~l~~~~~-~--~~~~~ 240 (885)
.++.+++|+|++|+|||||++.++........ .....++-......-. .+..... ....+.... . .....
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~ 86 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLMSDDENDQTVTGAAFDVLHYIVSKRLQLGKLTVVDATNVQES 86 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHHHSCGGGEEEHHHHHHHHCSSTTCGGGHHHHHHHHHHHHHHHHHTTCCEEEESCCCSHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHccCCeEEccHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHhCCCeEEEECCCCCHH
Confidence 35789999999999999999964422110000 0000000000000000 1111111 112232211 0 01112
Q ss_pred hhHHHHHHHHHhcCCCeEEEEecCCCccccc----------------cc-cccccccccCCCCCEEEEEcCChhHHhh
Q 045686 241 EDGRANEILSNLRGKKFVLLLDDVWERLDLS----------------KV-GVSDLLDDSSQTGSKIVFTTRSEEVCGE 301 (885)
Q Consensus 241 ~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~----------------~~-~~~~~l~~~~~~gs~IivTTR~~~v~~~ 301 (885)
.....-.+.+.+..++-+++||+.....|.. .. ...-.+......|..||++|++.+.+..
T Consensus 87 g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~ 164 (171)
T 4gp7_A 87 ARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEE 164 (171)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHH
T ss_pred HHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhh
Confidence 2333345778888899999999987654433 00 0000111122347889999999876654
No 266
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.16 E-value=0.0015 Score=68.00 Aligned_cols=26 Identities=23% Similarity=0.394 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 045686 172 NEKVIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 172 ~~~vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
....+.++|++|+|||+||+.+++..
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34678899999999999999999987
No 267
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.16 E-value=0.00055 Score=70.28 Aligned_cols=131 Identities=23% Similarity=0.226 Sum_probs=74.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--c----------------cEEEEEEEcC--cc----cH--------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--F----------------DLVIWVKVSR--DA----NL-------- 218 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f----------------~~~~wv~v~~--~~----~~-------- 218 (885)
.++.+++|+|+.|+|||||++.++.-..+..+. | ..+.++.-.. .+ ++
T Consensus 45 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~ 124 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGA 124 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhh
Confidence 567899999999999999999998765431100 0 0122321000 00 11
Q ss_pred --------------HHHHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cc
Q 045686 219 --------------EKIQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LL 279 (885)
Q Consensus 219 --------------~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l 279 (885)
.+...++++.+++.... ..-+..+...-.+.+.+..++-+|+||+..+..|........ .+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l 204 (279)
T 2ihy_A 125 FKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSIL 204 (279)
T ss_dssp ---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHH
T ss_pred hhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHH
Confidence 11234556666654211 011223444556778888899999999999887754331111 11
Q ss_pred cccCCCCCEE--EEEcCChhHHhh
Q 045686 280 DDSSQTGSKI--VFTTRSEEVCGE 301 (885)
Q Consensus 280 ~~~~~~gs~I--ivTTR~~~v~~~ 301 (885)
......|..| |++|++.+.+..
T Consensus 205 ~~l~~~g~tv~~iivtHd~~~~~~ 228 (279)
T 2ihy_A 205 DSLSDSYPTLAMIYVTHFIEEITA 228 (279)
T ss_dssp HHHHHHCTTCEEEEEESCGGGCCT
T ss_pred HHHHHCCCEEEEEEEecCHHHHHH
Confidence 1111226678 999998765543
No 268
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.15 E-value=0.0019 Score=71.92 Aligned_cols=46 Identities=20% Similarity=0.251 Sum_probs=36.3
Q ss_pred CCccchhHHHHHHHHHh---hc--CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 045686 152 GKTVGLDSIISEVWRCI---ED--HNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L---~~--~~~~vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
.+++|.++.++.+..++ .. ...+-+.++|++|+|||++|+.+++..
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l 87 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQEL 87 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHh
Confidence 56899999888665544 22 234578899999999999999999876
No 269
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.13 E-value=0.00098 Score=70.18 Aligned_cols=46 Identities=33% Similarity=0.356 Sum_probs=38.0
Q ss_pred CccchhHHHHHHHHHhhcC---------CCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 045686 153 KTVGLDSIISEVWRCIEDH---------NEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (885)
Q Consensus 153 ~~vgr~~~~~~l~~~L~~~---------~~~vi~I~G~gG~GKTtLa~~v~~~~~ 198 (885)
.++|.+..++.+...+... ....+.++|++|+||||+|+.+++...
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~ 72 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF 72 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHc
Confidence 4789999999888887431 235899999999999999999998763
No 270
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.12 E-value=0.0014 Score=67.08 Aligned_cols=46 Identities=20% Similarity=0.245 Sum_probs=34.6
Q ss_pred CCccchhHHHHHHHHHhhc--CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 045686 152 GKTVGLDSIISEVWRCIED--HNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~--~~~~vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
..++|++..+.++.+.+.. .....|.|+|++|+|||++|+.+++..
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhc
Confidence 3578999999888876642 334567799999999999999999876
No 271
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.11 E-value=0.00088 Score=70.03 Aligned_cols=46 Identities=15% Similarity=0.242 Sum_probs=37.6
Q ss_pred CCccchhHHHHHHHHHhhc--CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 045686 152 GKTVGLDSIISEVWRCIED--HNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~--~~~~vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
+.++|+...+.++.+.+.. .....|.|+|.+|+|||++|+.+++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 3588999999998888743 344567799999999999999999865
No 272
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.07 E-value=0.00033 Score=71.17 Aligned_cols=25 Identities=28% Similarity=0.308 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHh
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNN 195 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~ 195 (885)
.++.+++|+|++|+|||||++.++.
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 4678999999999999999999984
No 273
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.04 E-value=0.0035 Score=73.39 Aligned_cols=174 Identities=14% Similarity=0.212 Sum_probs=97.5
Q ss_pred CccchhHHHHHHHHHhh----c---------CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHH
Q 045686 153 KTVGLDSIISEVWRCIE----D---------HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLE 219 (885)
Q Consensus 153 ~~vgr~~~~~~l~~~L~----~---------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 219 (885)
++.|.++.+++|.+.+. . ...+-|.++|++|+|||+||+.+++... .+| +.+..+
T Consensus 205 dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg---~~~---~~v~~~------ 272 (806)
T 3cf2_A 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG---AFF---FLINGP------ 272 (806)
T ss_dssp GCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTT---CEE---EEEEHH------
T ss_pred hhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC---CeE---EEEEhH------
Confidence 45688888888777652 1 3456789999999999999999998762 222 333321
Q ss_pred HHHHHHHHHcCCCccccCCCChhHHHHHHHHHhcCCCeEEEEecCCCccc--------ccc-ccccc--cccc-cCCCCC
Q 045686 220 KIQESILRRFEIPDQMWIGKDEDGRANEILSNLRGKKFVLLLDDVWERLD--------LSK-VGVSD--LLDD-SSQTGS 287 (885)
Q Consensus 220 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~--------~~~-~~~~~--~l~~-~~~~gs 287 (885)
.+ . +. +.+.....+...........+.+|++|+++.... ... +...+ .+.. ....+.
T Consensus 273 ~l----~---sk----~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V 341 (806)
T 3cf2_A 273 EI----M---SK----LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHV 341 (806)
T ss_dssp HH----H---SS----CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCE
T ss_pred Hh----h---cc----cchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCE
Confidence 11 1 10 0112222233333444456789999999864210 000 00000 0000 111233
Q ss_pred EEEEEcCChh-HHhhh----cccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCchh
Q 045686 288 KIVFTTRSEE-VCGEM----GARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPL 353 (885)
Q Consensus 288 ~IivTTR~~~-v~~~~----~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPL 353 (885)
-||.||...+ +-..+ .-...+.+...+.++-.++|+.+........+.+ ...|++++.|..-
T Consensus 342 ~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvd----l~~lA~~T~Gfsg 408 (806)
T 3cf2_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD----LEQVANETHGHVG 408 (806)
T ss_dssp EEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCC----HHHHHHHCCSCCH
T ss_pred EEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhcCCCCH
Confidence 4555665443 21111 2345788999999999999988775443333334 4567788887653
No 274
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.02 E-value=0.0011 Score=75.77 Aligned_cols=132 Identities=18% Similarity=0.184 Sum_probs=79.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCc--c-EEEEEEEcC----cccHHH--------------HHHHHHHHc
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDF--D-LVIWVKVSR----DANLEK--------------IQESILRRF 229 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f--~-~~~wv~v~~----~~~~~~--------------~~~~i~~~l 229 (885)
..+.+++|+|+.|+|||||++.++....+..+.. . .+.++.-.. ..++.+ ...++++.+
T Consensus 380 ~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~ 459 (607)
T 3bk7_A 380 RKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPL 459 (607)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHc
Confidence 3578999999999999999999998764322221 1 233332110 112221 123455566
Q ss_pred CCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-ccccc-CCCCCEEEEEcCChhHHhhh
Q 045686 230 EIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDS-SQTGSKIVFTTRSEEVCGEM 302 (885)
Q Consensus 230 ~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~-~~~gs~IivTTR~~~v~~~~ 302 (885)
++.... ..-+..+...-.+.+.|..++-+++||+..+..|........ .+... ...|..||++|++.+.+..+
T Consensus 460 ~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~ 538 (607)
T 3bk7_A 460 GIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYV 538 (607)
T ss_dssp TCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred CCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence 664311 012234455556788899999999999999887765432111 11111 23477899999998776654
No 275
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.02 E-value=0.00091 Score=75.68 Aligned_cols=130 Identities=15% Similarity=0.194 Sum_probs=79.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC-----------cc----------------EEEEEEEcCcc-------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD-----------FD----------------LVIWVKVSRDA------- 216 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~-----------f~----------------~~~wv~v~~~~------- 216 (885)
..+.+++|+|+.|+|||||++.++....+..+. +. .+.++ .+..
T Consensus 45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~q~~~~~~~~~ 122 (538)
T 1yqt_A 45 KEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVK--PQYVDLIPKAV 122 (538)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEE--CSCGGGSGGGC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhh--hhhhhhcchhh
Confidence 467899999999999999999998765332111 10 01111 1110
Q ss_pred --cHHH---------HHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-ccc
Q 045686 217 --NLEK---------IQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLD 280 (885)
Q Consensus 217 --~~~~---------~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~ 280 (885)
.+.+ ...++++.+++.... ..-+..+...-.|.+.|..++-+|+||+..+..|........ .+.
T Consensus 123 ~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~ 202 (538)
T 1yqt_A 123 KGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIR 202 (538)
T ss_dssp CSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHH
T ss_pred hccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHH
Confidence 1211 235677777775321 112334555567888899999999999999887765321111 111
Q ss_pred ccCCCCCEEEEEcCChhHHhhh
Q 045686 281 DSSQTGSKIVFTTRSEEVCGEM 302 (885)
Q Consensus 281 ~~~~~gs~IivTTR~~~v~~~~ 302 (885)
.....|..||++|++.+.+..+
T Consensus 203 ~l~~~g~tvi~vsHd~~~~~~~ 224 (538)
T 1yqt_A 203 RLSEEGKSVLVVEHDLAVLDYL 224 (538)
T ss_dssp HHHHTTCEEEEECSCHHHHHHH
T ss_pred HHHhcCCEEEEEeCCHHHHHHh
Confidence 1122478999999998776654
No 276
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.99 E-value=0.0035 Score=71.19 Aligned_cols=45 Identities=24% Similarity=0.450 Sum_probs=35.9
Q ss_pred CccchhHHHHHHHHHhh------cCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 045686 153 KTVGLDSIISEVWRCIE------DHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 153 ~~vgr~~~~~~l~~~L~------~~~~~vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
+.+|.++..+.+.+.+. .....++.++|++|+||||||+.++...
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 46788877777765441 2356799999999999999999999877
No 277
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.98 E-value=0.00087 Score=76.75 Aligned_cols=130 Identities=16% Similarity=0.224 Sum_probs=79.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC-----------ccE----------------EEEEEEcCc--------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD-----------FDL----------------VIWVKVSRD-------- 215 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~-----------f~~----------------~~wv~v~~~-------- 215 (885)
..+.+++|+|+.|+|||||++.++....+..+. |.. +.+ +.+.
T Consensus 115 ~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~--~~q~~~~~~~~~ 192 (607)
T 3bk7_A 115 KDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVV--KPQYVDLLPKAV 192 (607)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEE--ECSCGGGGGGTC
T ss_pred CCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhhhhcceEE--eechhhhchhhc
Confidence 467899999999999999999998765432121 100 111 1111
Q ss_pred -ccHHH---------HHHHHHHHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-ccc
Q 045686 216 -ANLEK---------IQESILRRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLD 280 (885)
Q Consensus 216 -~~~~~---------~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~ 280 (885)
.++.+ ...++++.+++.... ..-+..+...-.|.+.|..++-+|+||+..+..|........ .+.
T Consensus 193 ~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~ 272 (607)
T 3bk7_A 193 KGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIR 272 (607)
T ss_dssp CSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHH
T ss_pred cccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHH
Confidence 01211 234677777765321 112334555567888899999999999999887765321111 111
Q ss_pred ccCCCCCEEEEEcCChhHHhhh
Q 045686 281 DSSQTGSKIVFTTRSEEVCGEM 302 (885)
Q Consensus 281 ~~~~~gs~IivTTR~~~v~~~~ 302 (885)
.....|..||++|++.+.+..+
T Consensus 273 ~l~~~g~tvIivsHdl~~~~~~ 294 (607)
T 3bk7_A 273 RLANEGKAVLVVEHDLAVLDYL 294 (607)
T ss_dssp HHHHTTCEEEEECSCHHHHHHH
T ss_pred HHHhcCCEEEEEecChHHHHhh
Confidence 1122478999999998876654
No 278
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.97 E-value=0.021 Score=58.49 Aligned_cols=152 Identities=18% Similarity=0.148 Sum_probs=80.1
Q ss_pred CCccchhHHHHHHHHHhh----c---------CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccH
Q 045686 152 GKTVGLDSIISEVWRCIE----D---------HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANL 218 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~----~---------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 218 (885)
.++.|.++.+++|.+.+. . ...+-+.++|++|+||||||+.++.... . ..+++....-.+.
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~---~---~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESG---L---NFISVKGPELLNM 83 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTT---C---EEEEEETTTTCSS
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcC---C---CEEEEEcHHHHhh
Confidence 457788888888776541 0 1122299999999999999999998763 1 2333332211000
Q ss_pred HHHHHHHHHHcCCCccccCCCChhHHHHHHHHH-hcCCCeEEEEecCCCcccc---------ccccccc--cccc-cCCC
Q 045686 219 EKIQESILRRFEIPDQMWIGKDEDGRANEILSN-LRGKKFVLLLDDVWERLDL---------SKVGVSD--LLDD-SSQT 285 (885)
Q Consensus 219 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVLDdv~~~~~~---------~~~~~~~--~l~~-~~~~ 285 (885)
...........+.+. -...+.++++|++...... ......+ .+.. ....
T Consensus 84 ------------------~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~ 145 (274)
T 2x8a_A 84 ------------------YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQ 145 (274)
T ss_dssp ------------------TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTT
T ss_pred ------------------hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccC
Confidence 000011112222222 2346789999999652110 0000000 0000 0112
Q ss_pred CCEEEEEcCChhHHhhh-----cccceeeccCCChHHHHHHHHHHhc
Q 045686 286 GSKIVFTTRSEEVCGEM-----GARRRFRVECLSPEAALDLFRYKVG 327 (885)
Q Consensus 286 gs~IivTTR~~~v~~~~-----~~~~~~~l~~L~~~~~~~Lf~~~~~ 327 (885)
..-++.+|...++.... .-...+.++..+.++-.++|+....
T Consensus 146 ~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~ 192 (274)
T 2x8a_A 146 QVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITK 192 (274)
T ss_dssp CEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTT
T ss_pred CEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHh
Confidence 33455566665543221 2345678899999999999987764
No 279
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.93 E-value=0.0021 Score=63.63 Aligned_cols=91 Identities=13% Similarity=0.146 Sum_probs=55.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHHHcCCCccc-------cCCCCh--
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILRRFEIPDQM-------WIGKDE-- 241 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~-- 241 (885)
..+.++.|+|++|+|||||+..++. .. + ..++|++....++...+. .+.+.++..... ....+.
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~-~~---~--~~v~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGL-LS---G--KKVAYVDTEGGFSPERLV-QMAETRGLNPEEALSRFILFTPSDFKE 90 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHH-HH---C--SEEEEEESSCCCCHHHHH-HHHHTTTCCHHHHHHHEEEECCTTTSH
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH-Hc---C--CcEEEEECCCCCCHHHHH-HHHHhcCCChHHHhhcEEEEecCCHHH
Confidence 5678999999999999999999988 21 1 357788766544554443 344444331100 011222
Q ss_pred -hHHHHHHHHHhcCCCeEEEEecCCCcc
Q 045686 242 -DGRANEILSNLRGKKFVLLLDDVWERL 268 (885)
Q Consensus 242 -~~~~~~l~~~l~~k~~LlVLDdv~~~~ 268 (885)
......++.....+.-++|+|.+....
T Consensus 91 ~~~~~~~~~~l~~~~~~lliiD~~~~~l 118 (220)
T 2cvh_A 91 QRRVIGSLKKTVDSNFALVVVDSITAHY 118 (220)
T ss_dssp HHHHHHHHHHHCCTTEEEEEEECCCCCT
T ss_pred HHHHHHHHHHHhhcCCCEEEEcCcHHHh
Confidence 223444444444457899999987653
No 280
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.91 E-value=0.001 Score=75.30 Aligned_cols=132 Identities=18% Similarity=0.192 Sum_probs=77.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCc--c-EEEEEEEcC----cccHHHHH--------------HHHHHHc
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDF--D-LVIWVKVSR----DANLEKIQ--------------ESILRRF 229 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f--~-~~~wv~v~~----~~~~~~~~--------------~~i~~~l 229 (885)
..+.+++|+|+.|+|||||++.++....+..+.. . .+.++.-.. ..++.+.+ .++++.+
T Consensus 310 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~ 389 (538)
T 1yqt_A 310 KKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPL 389 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHc
Confidence 3578999999999999999999998765422221 1 233332111 11222222 2223333
Q ss_pred CCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-ccccc-CCCCCEEEEEcCChhHHhhh
Q 045686 230 EIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDS-SQTGSKIVFTTRSEEVCGEM 302 (885)
Q Consensus 230 ~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~-~~~gs~IivTTR~~~v~~~~ 302 (885)
++.... ..-+..+...-.+.+++..++-+||||+..+..|........ .+... ...|..||++|++.+.+..+
T Consensus 390 ~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~ 468 (538)
T 1yqt_A 390 GIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYV 468 (538)
T ss_dssp TCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHH
T ss_pred CChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence 442110 012234455556788899999999999999887765432111 11111 12377899999998776654
No 281
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.91 E-value=0.0009 Score=75.49 Aligned_cols=129 Identities=13% Similarity=0.218 Sum_probs=75.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCc--c--EEEEEEEcCc------ccHHHHH---------------HHHH
Q 045686 172 NEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDF--D--LVIWVKVSRD------ANLEKIQ---------------ESIL 226 (885)
Q Consensus 172 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f--~--~~~wv~v~~~------~~~~~~~---------------~~i~ 226 (885)
.+.+++|+|+.|+|||||++.++.-..+..+.. . .+.++ .+. .++.+.+ .+++
T Consensus 293 ~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~--~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l 370 (538)
T 3ozx_A 293 EGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYK--PQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVT 370 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEE--CSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEee--chhcccccCCCHHHHHHHhhhhccchhHHHHHHHH
Confidence 578999999999999999999998764432221 1 12222 221 1222221 2222
Q ss_pred HHcCCCccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccc-cCCCCCEEEEEcCChhHHh
Q 045686 227 RRFEIPDQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDD-SSQTGSKIVFTTRSEEVCG 300 (885)
Q Consensus 227 ~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~-~~~~gs~IivTTR~~~v~~ 300 (885)
+.+++.... ..-+..+...-.+.++|..++-+|+||+..+..|........ .+.. ....|..||++|++.+.+.
T Consensus 371 ~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~ 450 (538)
T 3ozx_A 371 KRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHD 450 (538)
T ss_dssp TTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHH
T ss_pred HHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 333332110 011234445556888899999999999999887765331111 1111 1234788999999988776
Q ss_pred hh
Q 045686 301 EM 302 (885)
Q Consensus 301 ~~ 302 (885)
.+
T Consensus 451 ~~ 452 (538)
T 3ozx_A 451 YI 452 (538)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 282
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.90 E-value=0.0074 Score=63.84 Aligned_cols=89 Identities=11% Similarity=0.137 Sum_probs=59.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHHHcCCCccc---cCCCChhHHHHH
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILRRFEIPDQM---WIGKDEDGRANE 247 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~ 247 (885)
....++.|+|++|+||||||..++...... -..++|++....++.. .+++++..... ....+.++....
T Consensus 59 ~~G~i~~I~GppGsGKSTLal~la~~~~~~---gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~ 130 (356)
T 3hr8_A 59 PRGRIVEIFGQESSGKTTLALHAIAEAQKM---GGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEI 130 (356)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHH
Confidence 467899999999999999999998876421 1246788776665543 45666654321 123445555555
Q ss_pred HHHHhc-CCCeEEEEecCCCc
Q 045686 248 ILSNLR-GKKFVLLLDDVWER 267 (885)
Q Consensus 248 l~~~l~-~k~~LlVLDdv~~~ 267 (885)
+...++ .+.-++|+|.+...
T Consensus 131 ~~~l~~~~~~dlvVIDSi~~l 151 (356)
T 3hr8_A 131 VDELVRSGVVDLIVVDSVAAL 151 (356)
T ss_dssp HHHHHHTSCCSEEEEECTTTC
T ss_pred HHHHhhhcCCCeEEehHhhhh
Confidence 555554 45679999998543
No 283
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.90 E-value=0.0017 Score=74.16 Aligned_cols=129 Identities=15% Similarity=0.155 Sum_probs=77.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccCCCC-c--cEEEEEEEc--Cc--ccH--------------HHHHHHHHHHcCCC
Q 045686 174 KVIGLYGMGGVGKTTLLKKLNNKFRDTGHD-F--DLVIWVKVS--RD--ANL--------------EKIQESILRRFEIP 232 (885)
Q Consensus 174 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~-f--~~~~wv~v~--~~--~~~--------------~~~~~~i~~~l~~~ 232 (885)
.+++|+|+.|+|||||++.++.-..+..+. . ..+.++.-. .. ..+ .....++++.+++.
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~ 458 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRID 458 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTST
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCCh
Confidence 689999999999999999999876543221 0 012222100 00 011 12234455666654
Q ss_pred ccc----cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccc-cCCCCCEEEEEcCChhHHhhh
Q 045686 233 DQM----WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDD-SSQTGSKIVFTTRSEEVCGEM 302 (885)
Q Consensus 233 ~~~----~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~-~~~~gs~IivTTR~~~v~~~~ 302 (885)
... ..-+..+...-.+.++|..++-+|+||+.....|........ .+.. ....|..||++|++.+.+..+
T Consensus 459 ~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~ 534 (608)
T 3j16_B 459 DIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYL 534 (608)
T ss_dssp TTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHH
T ss_pred hhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence 311 112334455556888999999999999999887764331111 1111 123478999999998877654
No 284
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.88 E-value=0.0011 Score=71.13 Aligned_cols=127 Identities=15% Similarity=0.174 Sum_probs=71.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccC------CC---Cc------cEEEEEEEcCcc----------------cHH
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDT------GH---DF------DLVIWVKVSRDA----------------NLE 219 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~------~~---~f------~~~~wv~v~~~~----------------~~~ 219 (885)
..+.+++|+|++|+|||||.+.++.-.... .. .. ..+.+| .|.+ ...
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~~~G~I~i~G~~i~~~~~~~~rr~ig~v--~Q~~~lf~~tv~enl~~~~~~~~ 122 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLEQWRKAFGVI--PQKVFIFSGTFRKNLDPNAAHSD 122 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTCSEEEEEEEESSCBTTSSCHHHHHHTEEEE--SCCCCCCSEEHHHHHCTTCCSCH
T ss_pred cCCCEEEEECCCCChHHHHHHHHhCCCCCCeEEEECCEECCcCChHHHhCCEEEE--cCCcccCccCHHHHhhhccccCH
Confidence 678999999999999999999998743210 00 00 011121 1111 012
Q ss_pred HHHHHHHHHcCCCccc--c--C-----------CCChhHHHHHHHHHhcCCCeEEEEecCCCcccccccccc-ccccccC
Q 045686 220 KIQESILRRFEIPDQM--W--I-----------GKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVS-DLLDDSS 283 (885)
Q Consensus 220 ~~~~~i~~~l~~~~~~--~--~-----------~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~-~~l~~~~ 283 (885)
+-..++++.+++.... . . -+..+...-.|.+.+..++-+|+||+..+..|....... ..+. ..
T Consensus 123 ~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~-~~ 201 (390)
T 3gd7_A 123 QEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLK-QA 201 (390)
T ss_dssp HHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHH-HH
Confidence 2334556666553210 0 0 233444555678888889999999998776554321110 0111 12
Q ss_pred CCCCEEEEEcCChhHHh
Q 045686 284 QTGSKIVFTTRSEEVCG 300 (885)
Q Consensus 284 ~~gs~IivTTR~~~v~~ 300 (885)
..|..||++|++.+...
T Consensus 202 ~~~~tvi~vtHd~e~~~ 218 (390)
T 3gd7_A 202 FADCTVILCEARIEAML 218 (390)
T ss_dssp TTTSCEEEECSSSGGGT
T ss_pred hCCCEEEEEEcCHHHHH
Confidence 34678999999876544
No 285
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.86 E-value=0.0018 Score=64.89 Aligned_cols=120 Identities=18% Similarity=0.150 Sum_probs=64.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHHHcCCCcccc--------------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILRRFEIPDQMW-------------- 236 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~-------------- 236 (885)
..+.+++|+|++|+|||||++.++....... ..++|+.... ....+...+ ..++......
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~---~~v~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 94 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIFSLHFIAKGLRDG---DPCIYVTTEE--SRDSIIRQA-KQFNWDFEEYIEKKLIIIDALMKE 94 (235)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHHHHHHHT---CCEEEEESSS--CHHHHHHHH-HHTTCCCGGGBTTTEEEEECCC--
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHHHHCC---CeEEEEEccc--CHHHHHHHH-HHhcchHHHHhhCCEEEEeccccc
Confidence 4568999999999999999999987653221 1355655433 334433332 2444322110
Q ss_pred -------CCCChhHHHHHHHHHhc-CCCe--EEEEecCCCcc--cccccccc-ccccc-cCCCCCEEEEEcCCh
Q 045686 237 -------IGKDEDGRANEILSNLR-GKKF--VLLLDDVWERL--DLSKVGVS-DLLDD-SSQTGSKIVFTTRSE 296 (885)
Q Consensus 237 -------~~~~~~~~~~~l~~~l~-~k~~--LlVLDdv~~~~--~~~~~~~~-~~l~~-~~~~gs~IivTTR~~ 296 (885)
...+..++...+.+.+. .++- ++|+|++.... +....... ..+.. ....|..||+||+..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 95 KEDQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp --CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred cCceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 01134455555554443 2444 99999997543 32111000 01111 123578999999876
No 286
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.86 E-value=0.0032 Score=72.39 Aligned_cols=135 Identities=19% Similarity=0.172 Sum_probs=74.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--cc--------------EEEEEEEcCccc-----------------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FD--------------LVIWVKVSRDAN----------------- 217 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~--------------~~~wv~v~~~~~----------------- 217 (885)
+++.+++|+|+.|+|||||++.+..-..+..+. ++ .+.+| .|++.
T Consensus 367 ~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v--~Q~~~l~~~tv~eni~~~~~~~ 444 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALV--SQNVHLFNDTIANNIAYAAEGE 444 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEE--cCCCccccccHHHHHhccCCCC
Confidence 678899999999999999999998766432221 11 12222 22210
Q ss_pred -HHHHHHHHHHHcCCCcc---------------ccCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-ccc
Q 045686 218 -LEKIQESILRRFEIPDQ---------------MWIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLD 280 (885)
Q Consensus 218 -~~~~~~~i~~~l~~~~~---------------~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~ 280 (885)
..+-..+.++..+.... ...-+..+...-.+.+.+-.++-+++||++.+..|........ .+.
T Consensus 445 ~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~ 524 (582)
T 3b5x_A 445 YTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALD 524 (582)
T ss_pred CCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHH
Confidence 01112233333332110 0011223333345777788888999999998877654331111 111
Q ss_pred ccCCCCCEEEEEcCChhHHhhhcccceeec
Q 045686 281 DSSQTGSKIVFTTRSEEVCGEMGARRRFRV 310 (885)
Q Consensus 281 ~~~~~gs~IivTTR~~~v~~~~~~~~~~~l 310 (885)
....|..||++|++.+.... .++.+.+
T Consensus 525 -~~~~~~tvi~itH~~~~~~~--~d~i~~l 551 (582)
T 3b5x_A 525 -ELQKNKTVLVIAHRLSTIEQ--ADEILVV 551 (582)
T ss_pred -HHcCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 11237788888988766543 4444444
No 287
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.83 E-value=0.017 Score=58.49 Aligned_cols=173 Identities=14% Similarity=0.196 Sum_probs=86.9
Q ss_pred CCccchhHHHHHHHHHhh---c---------CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHH
Q 045686 152 GKTVGLDSIISEVWRCIE---D---------HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLE 219 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~---~---------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 219 (885)
.+++|.++.+.++.+... . .-.+-+.|+|++|+||||||+.+++... .. .+.+.. .
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~---~~---~i~~~~------~ 83 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR---VP---FITASG------S 83 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT---CC---EEEEEH------H
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC---CC---EEEeeH------H
Confidence 457888877666655431 1 1122389999999999999999998763 11 222221 1
Q ss_pred HHHHHHHHHcCCCccccCCCChhHHHHHHHHHh-cCCCeEEEEecCCCccc------------cccccccc--cccccC-
Q 045686 220 KIQESILRRFEIPDQMWIGKDEDGRANEILSNL-RGKKFVLLLDDVWERLD------------LSKVGVSD--LLDDSS- 283 (885)
Q Consensus 220 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVLDdv~~~~~------------~~~~~~~~--~l~~~~- 283 (885)
.+ .... .. ........+.+.. ...+.++++||+..... .......+ .+....
T Consensus 84 ~~----~~~~-------~~-~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~ 151 (254)
T 1ixz_A 84 DF----VEMF-------VG-VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK 151 (254)
T ss_dssp HH----HHSC-------TT-HHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCT
T ss_pred HH----HHHH-------hh-HHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCC
Confidence 11 1100 00 0111122222222 23568999999842110 00000000 000001
Q ss_pred CCCCEEEEEcCChhHHhh-----hcccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCch
Q 045686 284 QTGSKIVFTTRSEEVCGE-----MGARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLP 352 (885)
Q Consensus 284 ~~gs~IivTTR~~~v~~~-----~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP 352 (885)
....-++.||...++... ..-...+.+...+.++-.++++..+.......+.+ ...|++.+.|.-
T Consensus 152 ~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~----~~~la~~~~G~~ 221 (254)
T 1ixz_A 152 DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD----LALLAKRTPGFV 221 (254)
T ss_dssp TCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred CCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccC----HHHHHHHcCCCC
Confidence 112234446665554221 12335678888898888888887664322222222 346777787754
No 288
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.83 E-value=0.0029 Score=75.41 Aligned_cols=174 Identities=13% Similarity=0.184 Sum_probs=93.9
Q ss_pred CCccchhHHHHHHHHHhhc-------------CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccH
Q 045686 152 GKTVGLDSIISEVWRCIED-------------HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANL 218 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~-------------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 218 (885)
.+++|.+..+++|.+++.. .....|.|+|++|+||||||+.+++... ..| +.+...
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~---~~~---i~v~~~----- 272 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG---AFF---FLINGP----- 272 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTT---CEE---EEEEHH-----
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC---CcE---EEEEch-----
Confidence 4578999999888887732 3456899999999999999999988762 222 233221
Q ss_pred HHHHHHHHHHcCCCccccCCCChhHHHHHHHHHhcCCCeEEEEecCCCcccc-----cc----cccc-cc-ccc-cCCCC
Q 045686 219 EKIQESILRRFEIPDQMWIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDL-----SK----VGVS-DL-LDD-SSQTG 286 (885)
Q Consensus 219 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~-----~~----~~~~-~~-l~~-~~~~g 286 (885)
.+ .+.. .+.........+.......+.++++|++.....- .. +... +. +.. ....+
T Consensus 273 -~l-------~~~~----~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~ 340 (806)
T 1ypw_A 273 -EI-------MSKL----AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH 340 (806)
T ss_dssp -HH-------SSSS----TTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSC
T ss_pred -Hh-------hhhh----hhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhccccc
Confidence 11 0100 1111112222233334456789999999532110 00 0000 00 000 11224
Q ss_pred CEEEEEcCChhHH-hhh----cccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCch
Q 045686 287 SKIVFTTRSEEVC-GEM----GARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLP 352 (885)
Q Consensus 287 s~IivTTR~~~v~-~~~----~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP 352 (885)
..+|.||...+-. ..+ .-...+.+...+.++-.+++...+.........+ ...++..+.|..
T Consensus 341 v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~----l~~la~~t~g~~ 407 (806)
T 1ypw_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD----LEQVANETHGHV 407 (806)
T ss_dssp CEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCC----THHHHHSCSSCC
T ss_pred EEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccch----hHHHHHhhcCcc
Confidence 4566666654321 111 1224567888889999999987765433222223 244555666554
No 289
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.75 E-value=0.00094 Score=69.88 Aligned_cols=42 Identities=26% Similarity=0.400 Sum_probs=30.9
Q ss_pred hhHHHHHHHHHhhcC---CCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 045686 157 LDSIISEVWRCIEDH---NEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (885)
Q Consensus 157 r~~~~~~l~~~L~~~---~~~vi~I~G~gG~GKTtLa~~v~~~~~ 198 (885)
+...++.+.+++... ....+.|+|++|+|||+||+.+++...
T Consensus 133 ~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 133 RMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp HHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 334445555666542 257888999999999999999998764
No 290
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.74 E-value=0.0014 Score=60.13 Aligned_cols=45 Identities=22% Similarity=0.335 Sum_probs=36.0
Q ss_pred CccchhHHHHHHHHHhhc--CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 045686 153 KTVGLDSIISEVWRCIED--HNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 153 ~~vgr~~~~~~l~~~L~~--~~~~vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
.++|+...++++.+.+.. ....-|.|+|++|+|||++|+.+++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 478999999999888743 334557899999999999999998875
No 291
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.72 E-value=0.0033 Score=74.93 Aligned_cols=126 Identities=19% Similarity=0.252 Sum_probs=78.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhcc---CCCCccEEEEEEEcCc-------ccH-----------HHHHHHHHHHc
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRD---TGHDFDLVIWVKVSRD-------ANL-----------EKIQESILRRF 229 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~---~~~~f~~~~wv~v~~~-------~~~-----------~~~~~~i~~~l 229 (885)
..+.+++|+|+.|+|||||++.++.-.-. ...... +.+ +.+. .++ .....++++.+
T Consensus 459 ~~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~-~~~--v~q~~~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~l 535 (986)
T 2iw3_A 459 KRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECR-TVY--VEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEF 535 (986)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSC-EEE--TTCCCCCCCTTSBHHHHHHTTCSSCHHHHHHHHHHT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcccccee-EEE--EcccccccccCCcHHHHHHHhhcCHHHHHHHHHHHc
Confidence 56789999999999999999999842100 000111 122 2221 111 23345677788
Q ss_pred CCCcc----c-cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCCCCCEEEEEcCChhHHhhh
Q 045686 230 EIPDQ----M-WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQTGSKIVFTTRSEEVCGEM 302 (885)
Q Consensus 230 ~~~~~----~-~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~gs~IivTTR~~~v~~~~ 302 (885)
|+... . ..-+..+...-.|.+.+..++-+|+||+..+..|........ .+. . .|..||++|++.+....+
T Consensus 536 gL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~-~--~g~tvIivSHdl~~l~~~ 611 (986)
T 2iw3_A 536 GFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLN-T--CGITSITISHDSVFLDNV 611 (986)
T ss_dssp TCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHH-H--SCSEEEEECSCHHHHHHH
T ss_pred CCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHH-h--CCCEEEEEECCHHHHHHh
Confidence 87421 0 122334555556788888999999999999887765432221 111 2 578999999998766544
No 292
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.72 E-value=0.0049 Score=65.39 Aligned_cols=44 Identities=25% Similarity=0.250 Sum_probs=37.5
Q ss_pred CCccchhHHHHHHHHHhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 045686 152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
..++|++..++.+...+..+ .-+.++|++|+|||+||+.+++..
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHHHT
T ss_pred cceeCcHHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHHHh
Confidence 35889999999988887653 467899999999999999998876
No 293
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.65 E-value=0.0018 Score=64.64 Aligned_cols=96 Identities=15% Similarity=0.160 Sum_probs=53.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccC--C-CCccEEEEEEEcCcccHHHHHHHHHHHcCCCccc-------cCCCC
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDT--G-HDFDLVIWVKVSRDANLEKIQESILRRFEIPDQM-------WIGKD 240 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~--~-~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~ 240 (885)
....+++|+|++|+|||||++.++...... . ..-..++|+.......... ...+.+..+..... .....
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNRGLDPDEVLKHIYVARAFN 101 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHH-HHHHHHHTTSCHHHHHHTEEEEECCS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHH-HHHHHHHcCCCHHHHhhcEEEEecCC
Confidence 467899999999999999999998754221 0 1234577776544333332 33444555443210 00111
Q ss_pred hh---HHHHHHHHHh------cCCCeEEEEecCCCc
Q 045686 241 ED---GRANEILSNL------RGKKFVLLLDDVWER 267 (885)
Q Consensus 241 ~~---~~~~~l~~~l------~~k~~LlVLDdv~~~ 267 (885)
.. .....+...+ ..++-++|+|++...
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~ 137 (231)
T 4a74_A 102 SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSH 137 (231)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHH
T ss_pred hHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHH
Confidence 11 1122233333 346779999998654
No 294
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.65 E-value=0.04 Score=61.19 Aligned_cols=170 Identities=13% Similarity=0.130 Sum_probs=90.5
Q ss_pred CCccchhHHHHHHHHHh---hc---------CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHH
Q 045686 152 GKTVGLDSIISEVWRCI---ED---------HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLE 219 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L---~~---------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 219 (885)
.+++|.++.+.++.+.. .. .-.+-+.|+|++|+||||||+.+++... .. .+.++.+.-..
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~---~~---~i~i~g~~~~~-- 102 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR---VP---FITASGSDFVE-- 102 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT---CC---EEEEEGGGGTS--
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC---CC---EEEEehhHHHH--
Confidence 56889988877776654 21 1123489999999999999999998763 22 23333221100
Q ss_pred HHHHHHHHHcCCCccccCCCChhHHHHHHHHHhcC----CCeEEEEecCCCcccc------------ccccccc--cccc
Q 045686 220 KIQESILRRFEIPDQMWIGKDEDGRANEILSNLRG----KKFVLLLDDVWERLDL------------SKVGVSD--LLDD 281 (885)
Q Consensus 220 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~----k~~LlVLDdv~~~~~~------------~~~~~~~--~l~~ 281 (885)
.........+...++. .+.++++||+...... ......+ .+..
T Consensus 103 -------------------~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg 163 (499)
T 2dhr_A 103 -------------------MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDG 163 (499)
T ss_dssp -------------------SCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGG
T ss_pred -------------------hhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcc
Confidence 0011112233333332 3579999999542100 0000000 0000
Q ss_pred -cCCCCCEEEEEcCChhHHhh-h----cccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCch
Q 045686 282 -SSQTGSKIVFTTRSEEVCGE-M----GARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLP 352 (885)
Q Consensus 282 -~~~~gs~IivTTR~~~v~~~-~----~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP 352 (885)
....+..|+.||...++... + .....+.++..+.++-.++++.++.......+.+ ...|++.+.|..
T Consensus 164 ~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~----l~~lA~~t~G~~ 236 (499)
T 2dhr_A 164 FEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD----LALLAKRTPGFV 236 (499)
T ss_dssp CCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSST----THHHHTTSCSCC
T ss_pred cccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHH----HHHHHHhcCCCC
Confidence 11223445556666554221 1 2234678888898888888887764322222222 355777777765
No 295
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.65 E-value=0.0032 Score=72.31 Aligned_cols=66 Identities=20% Similarity=0.080 Sum_probs=40.4
Q ss_pred hHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCCCCCEEEEEcCChhHHhhhcccceeec
Q 045686 242 DGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQTGSKIVFTTRSEEVCGEMGARRRFRV 310 (885)
Q Consensus 242 ~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~gs~IivTTR~~~v~~~~~~~~~~~l 310 (885)
+...-.+.+.+-.++-+++||++.+..|........ .+. ....|..+|++|++.+.... .++++.+
T Consensus 484 qrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~-~~~~~~tvi~itH~l~~~~~--~d~i~vl 550 (587)
T 3qf4_A 484 QKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLK-RYTKGCTTFIITQKIPTALL--ADKILVL 550 (587)
T ss_dssp HHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHH-HHSTTCEEEEEESCHHHHTT--SSEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHH-HhCCCCEEEEEecChHHHHh--CCEEEEE
Confidence 344445777888888899999999877654321111 111 12347788888888776542 4444444
No 296
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.62 E-value=0.0035 Score=72.21 Aligned_cols=135 Identities=17% Similarity=0.150 Sum_probs=75.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--c--------------cEEEEEEEcCcc-----c------------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--F--------------DLVIWVKVSRDA-----N------------ 217 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f--------------~~~~wv~v~~~~-----~------------ 217 (885)
+++.+++|+|+.|+|||||++.+..-..+..+. + ..+.+| .|++ +
T Consensus 368 ~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v--~Q~~~l~~~tv~eni~~~~~~~ 445 (595)
T 2yl4_A 368 PSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTV--SQEPILFSCSIAENIAYGADDP 445 (595)
T ss_dssp CTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEEEE--CSSCCCCSSBHHHHHHTTSSST
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceEEE--ccCCcccCCCHHHHHhhcCCCc
Confidence 678899999999999999999998766432110 0 112333 2211 0
Q ss_pred ---HHHHHHHHHHHcCCCc---------cc------cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-c
Q 045686 218 ---LEKIQESILRRFEIPD---------QM------WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-L 278 (885)
Q Consensus 218 ---~~~~~~~i~~~l~~~~---------~~------~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~ 278 (885)
..+-..+.++.++... +. ..-+..+...-.+.+.+-.++-+++||++.+..|........ .
T Consensus 446 ~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~ 525 (595)
T 2yl4_A 446 SSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEA 525 (595)
T ss_dssp TTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHH
Confidence 1122234444443210 00 011223334445777777888899999999887754331111 1
Q ss_pred ccccCCCCCEEEEEcCChhHHhhhcccceeec
Q 045686 279 LDDSSQTGSKIVFTTRSEEVCGEMGARRRFRV 310 (885)
Q Consensus 279 l~~~~~~gs~IivTTR~~~v~~~~~~~~~~~l 310 (885)
+. .-..|..||++|++.+.... .++.+.+
T Consensus 526 l~-~~~~~~tvi~itH~~~~~~~--~d~i~~l 554 (595)
T 2yl4_A 526 LD-RLMDGRTVLVIAHRLSTIKN--ANMVAVL 554 (595)
T ss_dssp HH-HHHTTSEEEEECCCHHHHHH--SSEEEEE
T ss_pred HH-HHhcCCEEEEEecCHHHHHc--CCEEEEE
Confidence 11 11126789999998776543 3344433
No 297
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.62 E-value=0.0024 Score=73.29 Aligned_cols=135 Identities=16% Similarity=0.196 Sum_probs=73.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--cc--------------EEEEEEEcCcc-----cH-----------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FD--------------LVIWVKVSRDA-----NL----------- 218 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~--------------~~~wv~v~~~~-----~~----------- 218 (885)
+++.+++|+|+.|+|||||++.+..-..+..+. ++ .+.++ .|++ ++
T Consensus 365 ~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v--~Q~~~l~~~tv~eni~~~~~~~ 442 (578)
T 4a82_A 365 EKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLV--QQDNILFSDTVKENILLGRPTA 442 (578)
T ss_dssp CTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEE--CSSCCCCSSBHHHHHGGGCSSC
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEE--eCCCccCcccHHHHHhcCCCCC
Confidence 678999999999999999999998766432111 11 12332 2221 11
Q ss_pred -HHHHHHHHHHcCCCc---------cc------cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccc
Q 045686 219 -EKIQESILRRFEIPD---------QM------WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDD 281 (885)
Q Consensus 219 -~~~~~~i~~~l~~~~---------~~------~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~ 281 (885)
.+-..+.++..+... +. ..-+..+...-.+.+.+-.++-+++||++.+..|........ .+.
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~- 521 (578)
T 4a82_A 443 TDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALD- 521 (578)
T ss_dssp CHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHH-
Confidence 111122222222110 00 011223334445777777888899999998887754321111 111
Q ss_pred cCCCCCEEEEEcCChhHHhhhcccceeec
Q 045686 282 SSQTGSKIVFTTRSEEVCGEMGARRRFRV 310 (885)
Q Consensus 282 ~~~~gs~IivTTR~~~v~~~~~~~~~~~l 310 (885)
...+|..+|++|++.+.... .++.+.+
T Consensus 522 ~~~~~~t~i~itH~l~~~~~--~d~i~~l 548 (578)
T 4a82_A 522 VLSKDRTTLIVAHRLSTITH--ADKIVVI 548 (578)
T ss_dssp HHTTTSEEEEECSSGGGTTT--CSEEEEE
T ss_pred HHcCCCEEEEEecCHHHHHc--CCEEEEE
Confidence 12346788888988776543 4444444
No 298
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.60 E-value=0.0054 Score=61.66 Aligned_cols=97 Identities=10% Similarity=0.130 Sum_probs=58.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCC---CCccEEEEEEEcCcccHHHHHHHHHHHcCCCcc----c---cCCCC
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTG---HDFDLVIWVKVSRDANLEKIQESILRRFEIPDQ----M---WIGKD 240 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~---~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~----~---~~~~~ 240 (885)
....++.|+|++|+|||||+..++....... ..-..++|+.....+....+ .++++.++.... . ....+
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~ 100 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERL-LAVAERYGLSGSDVLDNVAYARAFN 100 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHH-HHHHHHcCCCHHHHhhCeEEEecCC
Confidence 4678999999999999999999988532100 01356888887665444433 344556655421 0 01222
Q ss_pred hhHH---HHHHHHHhc-CCCeEEEEecCCCcc
Q 045686 241 EDGR---ANEILSNLR-GKKFVLLLDDVWERL 268 (885)
Q Consensus 241 ~~~~---~~~l~~~l~-~k~~LlVLDdv~~~~ 268 (885)
..+. ...+.+.+. .+.-++|+|++....
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~ 132 (243)
T 1n0w_A 101 TDHQTQLLYQASAMMVESRYALLIVDSATALY 132 (243)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEEETSSGGG
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEeCchHHH
Confidence 3322 233444443 467899999997543
No 299
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.59 E-value=0.038 Score=56.74 Aligned_cols=173 Identities=15% Similarity=0.202 Sum_probs=88.0
Q ss_pred CCccchhHHHHHHHHHhh---c---------CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHH
Q 045686 152 GKTVGLDSIISEVWRCIE---D---------HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLE 219 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~---~---------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 219 (885)
.+++|.++.++++.+... . .-.+-+.|+|++|+||||||+.++.... . ..+.+...
T Consensus 40 ~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~---~---~~i~~~~~------ 107 (278)
T 1iy2_A 40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR---V---PFITASGS------ 107 (278)
T ss_dssp GGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT---C---CEEEEEHH------
T ss_pred HHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC---C---CEEEecHH------
Confidence 468898877776665441 1 1112389999999999999999998763 1 12233211
Q ss_pred HHHHHHHHHcCCCccccCCCChhHHHHHHHHHh-cCCCeEEEEecCCCcc------------ccccccccc--cccccC-
Q 045686 220 KIQESILRRFEIPDQMWIGKDEDGRANEILSNL-RGKKFVLLLDDVWERL------------DLSKVGVSD--LLDDSS- 283 (885)
Q Consensus 220 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVLDdv~~~~------------~~~~~~~~~--~l~~~~- 283 (885)
.+ .... .. ........+.+.. ...+.++++||+.... ........+ .+....
T Consensus 108 ~~----~~~~-------~~-~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~ 175 (278)
T 1iy2_A 108 DF----VEMF-------VG-VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK 175 (278)
T ss_dssp HH----HHST-------TT-HHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCT
T ss_pred HH----HHHH-------hh-HHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCC
Confidence 11 1100 00 0111122222222 2456899999984210 000000000 000001
Q ss_pred CCCCEEEEEcCChhHHh-----hhcccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCch
Q 045686 284 QTGSKIVFTTRSEEVCG-----EMGARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLP 352 (885)
Q Consensus 284 ~~gs~IivTTR~~~v~~-----~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP 352 (885)
....-++.||...++.. .......+.+...+.++-.+++...+.......+.+ ...+++.+.|..
T Consensus 176 ~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~----~~~la~~~~G~~ 245 (278)
T 1iy2_A 176 DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD----LALLAKRTPGFV 245 (278)
T ss_dssp TCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred CCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccC----HHHHHHHcCCCC
Confidence 11223444565544321 112345688888999888888887764332222222 346777887765
No 300
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.59 E-value=0.004 Score=74.25 Aligned_cols=46 Identities=24% Similarity=0.386 Sum_probs=37.5
Q ss_pred CCccchhHHHHHHHHHhhc---------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 045686 152 GKTVGLDSIISEVWRCIED---------HNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~---------~~~~vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
..++|.+..++.+.+.+.. .....+.++|++|+|||++|+.+++..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999888888742 112368999999999999999999876
No 301
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.55 E-value=0.0027 Score=65.37 Aligned_cols=70 Identities=17% Similarity=0.255 Sum_probs=46.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEE--cCcccHHHHHHHHHHHcCCCccccCCCChhHHHHHHH
Q 045686 172 NEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKV--SRDANLEKIQESILRRFEIPDQMWIGKDEDGRANEIL 249 (885)
Q Consensus 172 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v--~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 249 (885)
..+++.|+|++|+||||||.+++.... . .++|+++ .+. +.. ...+.+.....+.
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~~G---~---~VlyIs~~~eE~-------------v~~-----~~~~le~~l~~i~ 177 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEALG---G---KDKYATVRFGEP-------------LSG-----YNTDFNVFVDDIA 177 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHHHH---T---TSCCEEEEBSCS-------------STT-----CBCCHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhCC---C---CEEEEEecchhh-------------hhh-----hhcCHHHHHHHHH
Confidence 457789999999999999999987621 1 2345555 222 111 1134566666677
Q ss_pred HHhcCCCeEEEEecCCC
Q 045686 250 SNLRGKKFVLLLDDVWE 266 (885)
Q Consensus 250 ~~l~~k~~LlVLDdv~~ 266 (885)
+.+...+ +||+|++..
T Consensus 178 ~~l~~~~-LLVIDsI~a 193 (331)
T 2vhj_A 178 RAMLQHR-VIVIDSLKN 193 (331)
T ss_dssp HHHHHCS-EEEEECCTT
T ss_pred HHHhhCC-EEEEecccc
Confidence 7776666 999999964
No 302
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.54 E-value=0.0025 Score=73.22 Aligned_cols=135 Identities=19% Similarity=0.172 Sum_probs=74.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--c--------------cEEEEEEEcCcc-----cH-----------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--F--------------DLVIWVKVSRDA-----NL----------- 218 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f--------------~~~~wv~v~~~~-----~~----------- 218 (885)
.++.+++|+|+.|+|||||++.+..-..+..+. + ..+.+| .|++ ++
T Consensus 367 ~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v--~Q~~~l~~~tv~eni~~~~~~~ 444 (582)
T 3b60_A 367 PAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALV--SQNVHLFNDTVANNIAYARTEE 444 (582)
T ss_dssp CTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEE--CSSCCCCSSBHHHHHHTTTTSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEE--ccCCcCCCCCHHHHHhccCCCC
Confidence 678899999999999999999998766432110 0 012332 2221 00
Q ss_pred --HHHHHHHHHHcCCCc---------c------ccCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-ccc
Q 045686 219 --EKIQESILRRFEIPD---------Q------MWIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLD 280 (885)
Q Consensus 219 --~~~~~~i~~~l~~~~---------~------~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~ 280 (885)
.+-..+.++..+... + ...-+..+...-.+.+.+-.++-+++||++.+..|........ .+.
T Consensus 445 ~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~ 524 (582)
T 3b60_A 445 YSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALD 524 (582)
T ss_dssp CCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHH
Confidence 111223333333211 0 0011223333445677777788899999999887754321111 111
Q ss_pred ccCCCCCEEEEEcCChhHHhhhcccceeec
Q 045686 281 DSSQTGSKIVFTTRSEEVCGEMGARRRFRV 310 (885)
Q Consensus 281 ~~~~~gs~IivTTR~~~v~~~~~~~~~~~l 310 (885)
.. ..|..||++|++.+.... .++.+.+
T Consensus 525 ~~-~~~~tvi~itH~~~~~~~--~d~i~~l 551 (582)
T 3b60_A 525 EL-QKNRTSLVIAHRLSTIEQ--ADEIVVV 551 (582)
T ss_dssp HH-HTTSEEEEECSCGGGTTT--CSEEEEE
T ss_pred HH-hCCCEEEEEeccHHHHHh--CCEEEEE
Confidence 11 237789999998766542 4444444
No 303
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.39 E-value=0.015 Score=61.75 Aligned_cols=95 Identities=15% Similarity=0.220 Sum_probs=58.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCC---CCccEEEEEEEcCcccHHHHHHHHHHHcCCCccc-------cCCCC
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTG---HDFDLVIWVKVSRDANLEKIQESILRRFEIPDQM-------WIGKD 240 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~---~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~ 240 (885)
....++.|+|++|+||||||..++....... +.-..++|++....++...+. +++..++..... ....+
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~-~~~~~~g~~~~~~l~~l~~~~~~~ 198 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLR-DIADRFNVDHDAVLDNVLYARAYT 198 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHcCCCHHHHHhceeEeecCC
Confidence 5678999999999999999999987642100 023468899887776666554 445666654210 01112
Q ss_pred hh---HHHHHHHHHhc---CCCeEEEEecCCC
Q 045686 241 ED---GRANEILSNLR---GKKFVLLLDDVWE 266 (885)
Q Consensus 241 ~~---~~~~~l~~~l~---~k~~LlVLDdv~~ 266 (885)
.+ ++...+...+. .+.-+||+|.+..
T Consensus 199 ~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~ 230 (343)
T 1v5w_A 199 SEHQMELLDYVAAKFHEEAGIFKLLIIDSIMA 230 (343)
T ss_dssp TTHHHHHHHHHHHHHHHSCSSEEEEEEETSGG
T ss_pred HHHHHHHHHHHHHHHHhcCCCccEEEEechHH
Confidence 22 23333444443 4556888888853
No 304
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.38 E-value=0.0028 Score=68.74 Aligned_cols=105 Identities=16% Similarity=0.163 Sum_probs=63.2
Q ss_pred cCCCCchhHHHHHhhcCCccCCCCchhhhcCCcccEEecCCCCCCCcCc-hhhhcccccceeeccCCcccccChh-hhcc
Q 045686 532 EAPSCPQVRTLLARLTMLHTLPIPSRFFDSMDALEVLDLSYNLDLNQLP-EEIGRLKNLHHLNLSNTSIGCLPTA-IKRL 609 (885)
Q Consensus 532 ~~~~~~~Lr~L~l~~~~l~~~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp-~~i~~L~~L~~L~Ls~~~i~~lp~~-i~~L 609 (885)
.+..|..|+.+.+..+ ++. +....|.++..|+.+.+..+ ++.++ ..+.++.+|+.+.+.++.+..++.. |.++
T Consensus 235 ~f~~~~~L~~i~lp~~-v~~--I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c 309 (379)
T 4h09_A 235 AFYGMKALDEIAIPKN-VTS--IGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDC 309 (379)
T ss_dssp TTTTCSSCCEEEECTT-CCE--ECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTC
T ss_pred cccCCccceEEEcCCC-ccE--eCccccceeehhcccccccc--ceeccccccccccccccccccccccceehhhhhcCC
Confidence 3455566655555443 444 55555666667777766543 33333 3455667777777766666666544 6666
Q ss_pred ccccEeecCCcccccccCCcccccCcccceeccc
Q 045686 610 IKLKVLLLDGIQCHLSIPEGVISSLSSLQVFSCF 643 (885)
Q Consensus 610 ~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~ 643 (885)
.+|+.+.+..+ +..++...|.++++|+.+.+.
T Consensus 310 ~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 310 VKLSSVTLPTA--LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp TTCCEEECCTT--CCEECTTTTTTCTTCCCCCCC
T ss_pred CCCCEEEcCcc--ccEEHHHHhhCCCCCCEEEEC
Confidence 77777777544 556666666677777766664
No 305
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.31 E-value=0.0015 Score=64.18 Aligned_cols=117 Identities=16% Similarity=0.029 Sum_probs=63.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHHHcCCCccccCCCChhHHHHHHHH
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILRRFEIPDQMWIGKDEDGRANEILS 250 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 250 (885)
....++.|+|..|+||||++..++.+... ... .++.+....+.. ....++..+|............+....+.+
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~--~g~-kVli~~~~~d~r---~~~~i~srlG~~~~~~~~~~~~~i~~~i~~ 83 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEY--ADV-KYLVFKPKIDTR---SIRNIQSRTGTSLPSVEVESAPEILNYIMS 83 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHH--TTC-CEEEEEECCCGG---GCSSCCCCCCCSSCCEEESSTHHHHHHHHS
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHh--cCC-EEEEEEeccCch---HHHHHHHhcCCCccccccCCHHHHHHHHHH
Confidence 45689999999999999999988887742 222 244444333221 122455556654322111223344444444
Q ss_pred HhcCC-CeEEEEecCCCccccccccccccccccCCCCCEEEEEcCChh
Q 045686 251 NLRGK-KFVLLLDDVWERLDLSKVGVSDLLDDSSQTGSKIVFTTRSEE 297 (885)
Q Consensus 251 ~l~~k-~~LlVLDdv~~~~~~~~~~~~~~l~~~~~~gs~IivTTR~~~ 297 (885)
.+.+. .-+||+|++.... .+.+..... ....|..||+|-+..+
T Consensus 84 ~~~~~~~dvViIDEaQ~l~-~~~ve~l~~---L~~~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 84 NSFNDETKVIGIDEVQFFD-DRICEVANI---LAENGFVVIISGLDKN 127 (223)
T ss_dssp TTSCTTCCEEEECSGGGSC-THHHHHHHH---HHHTTCEEEEECCSBC
T ss_pred HhhCCCCCEEEEecCccCc-HHHHHHHHH---HHhCCCeEEEEecccc
Confidence 44334 4599999996421 111111111 1123788999998653
No 306
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.29 E-value=0.0098 Score=63.13 Aligned_cols=89 Identities=15% Similarity=0.176 Sum_probs=58.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHHHcCCCccc---cCCCChhHHHHH
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILRRFEIPDQM---WIGKDEDGRANE 247 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~ 247 (885)
...+++.|.|++|+||||||.+++...... -..++|++....++.. .++.+|..... ....+.++....
T Consensus 59 ~~G~iv~I~G~pGsGKTtLal~la~~~~~~---g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~ 130 (349)
T 2zr9_A 59 PRGRVIEIYGPESSGKTTVALHAVANAQAA---GGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEI 130 (349)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHH
Confidence 467899999999999999999998765321 2357888877666542 35666654321 122345555544
Q ss_pred HHHHhc-CCCeEEEEecCCCc
Q 045686 248 ILSNLR-GKKFVLLLDDVWER 267 (885)
Q Consensus 248 l~~~l~-~k~~LlVLDdv~~~ 267 (885)
+....+ .+.-+||+|.+...
T Consensus 131 ~~~l~~~~~~~lIVIDsl~~l 151 (349)
T 2zr9_A 131 ADMLVRSGALDIIVIDSVAAL 151 (349)
T ss_dssp HHHHHTTTCCSEEEEECGGGC
T ss_pred HHHHHhcCCCCEEEEcChHhh
Confidence 444443 35679999998643
No 307
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.28 E-value=0.013 Score=61.72 Aligned_cols=95 Identities=13% Similarity=0.187 Sum_probs=59.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCC---CCccEEEEEEEcCcccHHHHHHHHHHHcCCCccc-------cCCCC
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTG---HDFDLVIWVKVSRDANLEKIQESILRRFEIPDQM-------WIGKD 240 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~---~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~ 240 (885)
....++.|+|++|+||||||.+++....... +.-..++|++....++...+. ++++.++..... ....+
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~l~~~~~~~ 183 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGLDIDNVMNNIYYIRAIN 183 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCCCHHHHhccEEEEeCCC
Confidence 4678999999999999999999987642110 013468899887776666554 445666654310 01222
Q ss_pred hh---HHHHHHHHHhc--CCCeEEEEecCCC
Q 045686 241 ED---GRANEILSNLR--GKKFVLLLDDVWE 266 (885)
Q Consensus 241 ~~---~~~~~l~~~l~--~k~~LlVLDdv~~ 266 (885)
.+ +....+...++ .+.-+||+|.+..
T Consensus 184 ~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~ 214 (324)
T 2z43_A 184 TDHQIAIVDDLQELVSKDPSIKLIVVDSVTS 214 (324)
T ss_dssp HHHHHHHHHHHHHHHHHCTTEEEEEETTTTH
T ss_pred HHHHHHHHHHHHHHHHhccCCCEEEEeCcHH
Confidence 23 23344444544 4567888998853
No 308
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.23 E-value=0.0016 Score=69.23 Aligned_cols=116 Identities=17% Similarity=0.196 Sum_probs=65.5
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHHHcCCCccccCCCChhHHHHHHH
Q 045686 170 DHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILRRFEIPDQMWIGKDEDGRANEIL 249 (885)
Q Consensus 170 ~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 249 (885)
..+..+++|+|+.|+||||+.+.+....... ....+ +++.+..... .. ...+.-...............+.
T Consensus 120 ~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~---~~~~i-~t~ed~~e~~--~~---~~~~~v~q~~~~~~~~~~~~~La 190 (356)
T 3jvv_A 120 DVPRGLVLVTGPTGSGKSTTLAAMLDYLNNT---KYHHI-LTIEDPIEFV--HE---SKKCLVNQREVHRDTLGFSEALR 190 (356)
T ss_dssp HCSSEEEEEECSTTSCHHHHHHHHHHHHHHH---CCCEE-EEEESSCCSC--CC---CSSSEEEEEEBTTTBSCHHHHHH
T ss_pred hCCCCEEEEECCCCCCHHHHHHHHHhcccCC---CCcEE-EEccCcHHhh--hh---ccccceeeeeeccccCCHHHHHH
Confidence 3456799999999999999999998766421 01122 2222221100 00 00000000001112234555888
Q ss_pred HHhcCCCeEEEEecCCCccccccccccccccccCCCCCEEEEEcCChhHHh
Q 045686 250 SNLRGKKFVLLLDDVWERLDLSKVGVSDLLDDSSQTGSKIVFTTRSEEVCG 300 (885)
Q Consensus 250 ~~l~~k~~LlVLDdv~~~~~~~~~~~~~~l~~~~~~gs~IivTTR~~~v~~ 300 (885)
+.|...+-+|++|++.+...+..+ .. ....|..|++||+..+.+.
T Consensus 191 ~aL~~~PdvillDEp~d~e~~~~~---~~---~~~~G~~vl~t~H~~~~~~ 235 (356)
T 3jvv_A 191 SALREDPDIILVGEMRDLETIRLA---LT---AAETGHLVFGTLHTTSAAK 235 (356)
T ss_dssp HHTTSCCSEEEESCCCSHHHHHHH---HH---HHHTTCEEEEEESCSSHHH
T ss_pred HHhhhCcCEEecCCCCCHHHHHHH---HH---HHhcCCEEEEEEccChHHH
Confidence 999999999999999854332221 11 2234778999999876553
No 309
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.23 E-value=0.0043 Score=62.98 Aligned_cols=115 Identities=17% Similarity=0.193 Sum_probs=62.3
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHHHcCCCccccCCCChhHHHHHHH
Q 045686 170 DHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILRRFEIPDQMWIGKDEDGRANEIL 249 (885)
Q Consensus 170 ~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 249 (885)
-.+..+++|+|+.|+|||||++.+....... +.+.+++.-. +... +... ..........+.+.......+.
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~---~~G~I~~~g~-~i~~--~~~~---~~~~v~q~~~gl~~~~l~~~la 92 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYINQT---KSYHIITIED-PIEY--VFKH---KKSIVNQREVGEDTKSFADALR 92 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH---CCCEEEEEES-SCCS--CCCC---SSSEEEEEEBTTTBSCHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhCCCC---CCCEEEEcCC-ccee--ecCC---cceeeeHHHhCCCHHHHHHHHH
Confidence 4677899999999999999999998765321 1223322211 1000 0000 0000000000011123456677
Q ss_pred HHhcCCCeEEEEecCCCccccccccccccccccCCCCCEEEEEcCChhHH
Q 045686 250 SNLRGKKFVLLLDDVWERLDLSKVGVSDLLDDSSQTGSKIVFTTRSEEVC 299 (885)
Q Consensus 250 ~~l~~k~~LlVLDdv~~~~~~~~~~~~~~l~~~~~~gs~IivTTR~~~v~ 299 (885)
+.+..++-++++|++.+...... .+. ....|..|++||++.++.
T Consensus 93 ~aL~~~p~illlDEp~D~~~~~~---~l~---~~~~g~~vl~t~H~~~~~ 136 (261)
T 2eyu_A 93 AALREDPDVIFVGEMRDLETVET---ALR---AAETGHLVFGTLHTNTAI 136 (261)
T ss_dssp HHHHHCCSEEEESCCCSHHHHHH---HHH---HHHTTCEEEEEECCSSHH
T ss_pred HHHhhCCCEEEeCCCCCHHHHHH---HHH---HHccCCEEEEEeCcchHH
Confidence 77777888999999974322211 111 123477899999987643
No 310
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.22 E-value=0.0058 Score=72.85 Aligned_cols=79 Identities=11% Similarity=0.078 Sum_probs=49.2
Q ss_pred HHHHHHHcCCCcc---c---cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccccccccCCCCCEEEEEcCC
Q 045686 222 QESILRRFEIPDQ---M---WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSDLLDDSSQTGSKIVFTTRS 295 (885)
Q Consensus 222 ~~~i~~~l~~~~~---~---~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~~l~~~~~~gs~IivTTR~ 295 (885)
..++++.+|+... . ..-+..+...-.|.+.+..++-+||||+..+..|.......... ....|..||++|++
T Consensus 880 i~~~Le~lGL~~~~~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~--L~~~g~tVIiISHD 957 (986)
T 2iw3_A 880 IEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKA--LKEFEGGVIIITHS 957 (986)
T ss_dssp HHHHHHHTTCCHHHHHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHH--HHSCSSEEEEECSC
T ss_pred HHHHHHHcCCCchhhcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHH--HHHhCCEEEEEECC
Confidence 4566777777531 1 11233444555677888899999999999988776544222110 11224589999999
Q ss_pred hhHHhhh
Q 045686 296 EEVCGEM 302 (885)
Q Consensus 296 ~~v~~~~ 302 (885)
.+.+...
T Consensus 958 ~e~v~~l 964 (986)
T 2iw3_A 958 AEFTKNL 964 (986)
T ss_dssp HHHHTTT
T ss_pred HHHHHHh
Confidence 8776543
No 311
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=96.20 E-value=0.0083 Score=70.20 Aligned_cols=68 Identities=10% Similarity=0.119 Sum_probs=44.5
Q ss_pred hhHHHHHHHHHhcCCCe--EEEEecCCCccccccccccc-cccccCCCCCEEEEEcCChhHHhhhcccceeec
Q 045686 241 EDGRANEILSNLRGKKF--VLLLDDVWERLDLSKVGVSD-LLDDSSQTGSKIVFTTRSEEVCGEMGARRRFRV 310 (885)
Q Consensus 241 ~~~~~~~l~~~l~~k~~--LlVLDdv~~~~~~~~~~~~~-~l~~~~~~gs~IivTTR~~~v~~~~~~~~~~~l 310 (885)
.+...-.|.+.|..++- +|+||+.....|........ .+......|..||++|++.+++.. .++.+.+
T Consensus 206 Ge~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~--~d~ii~l 276 (670)
T 3ux8_A 206 GEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLA--ADYLIDI 276 (670)
T ss_dssp HHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHHHHH--CSEEEEE
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhh--CCEEEEe
Confidence 44555567788877766 99999999887765432111 111122347899999999887653 4555555
No 312
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.19 E-value=0.005 Score=59.96 Aligned_cols=43 Identities=30% Similarity=0.437 Sum_probs=34.8
Q ss_pred chhHHHHHHHHHhhc---CCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 045686 156 GLDSIISEVWRCIED---HNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (885)
Q Consensus 156 gr~~~~~~l~~~L~~---~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 198 (885)
.|++.++++.+.+.. ....+|+|+|++|+||||+++.+.....
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp CHHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 356677778777754 4568999999999999999999988663
No 313
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.16 E-value=0.012 Score=60.27 Aligned_cols=87 Identities=13% Similarity=0.134 Sum_probs=57.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHHHcCCCccc---cCCCChhHHHHHHHHH
Q 045686 175 VIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILRRFEIPDQM---WIGKDEDGRANEILSN 251 (885)
Q Consensus 175 vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l~~~ 251 (885)
++-|.|++|+|||||+.+++...... ..-..++|++....++.. .++++|...+. ....+.++....+.+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~-g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQ-YPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHH-CTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhc-CCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 78999999999999999887766321 112468898887777653 37788876532 1233455541223233
Q ss_pred h----cCCCeEEEEecCCCc
Q 045686 252 L----RGKKFVLLLDDVWER 267 (885)
Q Consensus 252 l----~~k~~LlVLDdv~~~ 267 (885)
+ .++.-++|+|-+...
T Consensus 104 l~~i~~~~~~lvVIDSI~aL 123 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNL 123 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTC
T ss_pred HHHhhccCceEEEEeccccc
Confidence 2 356789999999654
No 314
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.07 E-value=0.0041 Score=71.57 Aligned_cols=64 Identities=11% Similarity=0.073 Sum_probs=39.3
Q ss_pred HHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCCCCCEEEEEcCChhHHhhhcccceeec
Q 045686 244 RANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQTGSKIVFTTRSEEVCGEMGARRRFRV 310 (885)
Q Consensus 244 ~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~gs~IivTTR~~~v~~~~~~~~~~~l 310 (885)
..-.+.+.+-.++-+++||++.+..|........ .+. ....|..||++|++.+.... .++++.+
T Consensus 498 Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~-~~~~~~t~i~itH~l~~~~~--~d~i~~l 562 (598)
T 3qf4_B 498 QLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMW-KLMEGKTSIIIAHRLNTIKN--ADLIIVL 562 (598)
T ss_dssp HHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHH-HHHTTSEEEEESCCTTHHHH--CSEEEEE
T ss_pred HHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHH-HHcCCCEEEEEecCHHHHHc--CCEEEEE
Confidence 3345677777888889999998877654321111 111 11247889999988776553 4444444
No 315
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.01 E-value=0.016 Score=61.43 Aligned_cols=88 Identities=14% Similarity=0.115 Sum_probs=56.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHHHcCCCccc---cCCCChhHHHHH
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILRRFEIPDQM---WIGKDEDGRANE 247 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~ 247 (885)
...+++.|.|.+|+||||||.+++...... -..++|++....++.. .+..++..... ....+.++....
T Consensus 61 ~~G~ii~I~G~pGsGKTtLal~la~~~~~~---g~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~~ 132 (356)
T 1u94_A 61 PMGRIVEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEI 132 (356)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHHH
Confidence 467899999999999999999988776321 1358888887766543 24566654321 112234444444
Q ss_pred HHHHh-cCCCeEEEEecCCC
Q 045686 248 ILSNL-RGKKFVLLLDDVWE 266 (885)
Q Consensus 248 l~~~l-~~k~~LlVLDdv~~ 266 (885)
+.... ..+.-+||+|.+..
T Consensus 133 ~~~l~~~~~~~lVVIDsl~~ 152 (356)
T 1u94_A 133 CDALARSGAVDVIVVDSVAA 152 (356)
T ss_dssp HHHHHHHTCCSEEEEECGGG
T ss_pred HHHHHhccCCCEEEEcCHHH
Confidence 44333 24567999999853
No 316
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.00 E-value=0.0051 Score=60.23 Aligned_cols=40 Identities=23% Similarity=0.395 Sum_probs=31.6
Q ss_pred HHHHHHHHHhhc--CCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 045686 159 SIISEVWRCIED--HNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (885)
Q Consensus 159 ~~~~~l~~~L~~--~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 198 (885)
+..++|.+.+.. .++.+|+|+|++|+|||||++.+.....
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345556565543 5678999999999999999999988774
No 317
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=95.97 E-value=0.015 Score=63.76 Aligned_cols=64 Identities=9% Similarity=0.084 Sum_probs=39.8
Q ss_pred HHHHHHHHhcCCC--eEEEEecCCCccccccccccc-cccccCCCCCEEEEEcCChhHHhhhcccceeec
Q 045686 244 RANEILSNLRGKK--FVLLLDDVWERLDLSKVGVSD-LLDDSSQTGSKIVFTTRSEEVCGEMGARRRFRV 310 (885)
Q Consensus 244 ~~~~l~~~l~~k~--~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~gs~IivTTR~~~v~~~~~~~~~~~l 310 (885)
..-.|...+...+ -+||||++.+..|........ .+.... .|..||++|++.+++.. .+..+.+
T Consensus 302 qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~~~~~~--~d~i~~l 368 (415)
T 4aby_A 302 SRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLAQIAAR--AHHHYKV 368 (415)
T ss_dssp HHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCHHHHTT--CSEEEEE
T ss_pred HHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcHHHHhh--cCeEEEE
Confidence 3334555665566 899999999887755432211 111122 47899999999988753 3444444
No 318
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.96 E-value=0.022 Score=58.84 Aligned_cols=87 Identities=17% Similarity=0.186 Sum_probs=49.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcC-cccHHHHHHHHHHHcCCCccccCCCChhHHHHHHHH
Q 045686 172 NEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSR-DANLEKIQESILRRFEIPDQMWIGKDEDGRANEILS 250 (885)
Q Consensus 172 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 250 (885)
+..+++|+|++|+||||++..++.......+ ..+..+.... .....+.+....+..+.+.. ...+...+...+..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G--~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~--~~~~~~~l~~al~~ 179 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKH--KKIAFITTDTYRIAAVEQLKTYAELLQAPLE--VCYTKEEFQQAKEL 179 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTC--CCEEEEECCCSSTTHHHHHHHHHTTTTCCCC--BCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC--CEEEEEecCcccchHHHHHHHHHHhcCCCeE--ecCCHHHHHHHHHH
Confidence 5689999999999999999999887753112 1244444322 22233334444444554431 12233444333443
Q ss_pred HhcCCCeEEEEecC
Q 045686 251 NLRGKKFVLLLDDV 264 (885)
Q Consensus 251 ~l~~k~~LlVLDdv 264 (885)
+ .+.-++|+|-.
T Consensus 180 -~-~~~dlvIiDT~ 191 (296)
T 2px0_A 180 -F-SEYDHVFVDTA 191 (296)
T ss_dssp -G-GGSSEEEEECC
T ss_pred -h-cCCCEEEEeCC
Confidence 3 45568889943
No 319
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.92 E-value=0.02 Score=60.99 Aligned_cols=88 Identities=15% Similarity=0.156 Sum_probs=58.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHHHcCCCccc---cCCCChhHHHHH
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILRRFEIPDQM---WIGKDEDGRANE 247 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~ 247 (885)
....++.|.|.+|+||||||..++...... -..++|++....++.. .++.++..... ....+.++....
T Consensus 72 ~~G~li~I~G~pGsGKTtlal~la~~~~~~---g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~ 143 (366)
T 1xp8_A 72 PRGRITEIYGPESGGKTTLALAIVAQAQKA---GGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEI 143 (366)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHH
T ss_pred cCCcEEEEEcCCCCChHHHHHHHHHHHHHC---CCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHH
Confidence 456899999999999999999988765321 2358899887766543 25566654321 123345566555
Q ss_pred HHHHhc-CCCeEEEEecCCC
Q 045686 248 ILSNLR-GKKFVLLLDDVWE 266 (885)
Q Consensus 248 l~~~l~-~k~~LlVLDdv~~ 266 (885)
+....+ .+.-+||+|.+..
T Consensus 144 l~~l~~~~~~~lVVIDsl~~ 163 (366)
T 1xp8_A 144 MELLVRSGAIDVVVVDSVAA 163 (366)
T ss_dssp HHHHHTTTCCSEEEEECTTT
T ss_pred HHHHHhcCCCCEEEEeChHH
Confidence 555554 3456999999854
No 320
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.91 E-value=0.024 Score=58.80 Aligned_cols=92 Identities=22% Similarity=0.174 Sum_probs=53.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHH--HHHHHHHHHcCCCccc-cCCCChhHH-HH
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLE--KIQESILRRFEIPDQM-WIGKDEDGR-AN 246 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~--~~~~~i~~~l~~~~~~-~~~~~~~~~-~~ 246 (885)
....+++|+|++|+||||++..++...... + ..+.++... .+... +-+...++.++++.-. ..+.+.... ..
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~-g--~kV~lv~~D-~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~ 177 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDE-G--KSVVLAAAD-TFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFD 177 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHT-T--CCEEEEEEC-TTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhc-C--CEEEEEccc-cccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHH
Confidence 356899999999999999999999887532 1 124444432 22222 2234455555554311 012223222 23
Q ss_pred HHHHHhcCCCeEEEEecCCC
Q 045686 247 EILSNLRGKKFVLLLDDVWE 266 (885)
Q Consensus 247 ~l~~~l~~k~~LlVLDdv~~ 266 (885)
.+...+..+.-++|+|....
T Consensus 178 al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 178 AVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp HHHHHHHTTCSEEEEEECCC
T ss_pred HHHHHHhcCCCEEEEECCCc
Confidence 45555666677899997753
No 321
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.90 E-value=0.01 Score=70.86 Aligned_cols=46 Identities=24% Similarity=0.249 Sum_probs=37.2
Q ss_pred CCccchhHHHHHHHHHhhc---------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 045686 152 GKTVGLDSIISEVWRCIED---------HNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~---------~~~~vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
..++|.+..++.+...+.. .....+.++|++|+|||++|+.+++..
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 4578999999888887732 123478999999999999999999876
No 322
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.90 E-value=0.034 Score=58.21 Aligned_cols=58 Identities=28% Similarity=0.366 Sum_probs=37.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcC-cccHHHHHHHHHHHcCC
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSR-DANLEKIQESILRRFEI 231 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~i~~~l~~ 231 (885)
.++.+++|+|++|+||||+++.++...... .. .+.++...- .....+.+....+.+++
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~--~g-~V~l~g~D~~r~~a~eql~~~~~~~gv 185 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNH--GF-SVVIAASDTFRAGAIEQLEEHAKRIGV 185 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHT--TC-CEEEEEECCSSTTHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhc--CC-EEEEEeecccccchHHHHHHHHHHcCc
Confidence 567899999999999999999999887543 12 233333221 12233344555666664
No 323
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.76 E-value=0.013 Score=73.93 Aligned_cols=29 Identities=24% Similarity=0.447 Sum_probs=25.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhcc
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRD 199 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~ 199 (885)
+++..++|+|+.|+|||||++.+.....+
T Consensus 442 ~~G~~vaivG~sGsGKSTll~ll~~~~~~ 470 (1321)
T 4f4c_A 442 NAGQTVALVGSSGCGKSTIISLLLRYYDV 470 (1321)
T ss_dssp CTTCEEEEEECSSSCHHHHHHHHTTSSCC
T ss_pred cCCcEEEEEecCCCcHHHHHHHhcccccc
Confidence 67899999999999999999999877643
No 324
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.72 E-value=0.023 Score=60.40 Aligned_cols=98 Identities=14% Similarity=0.202 Sum_probs=57.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhc--cCCCCc-cEEEEEEEcCcccHHHHHHHHHHHcCCCccc-------cCCCC
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFR--DTGHDF-DLVIWVKVSRDANLEKIQESILRRFEIPDQM-------WIGKD 240 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~--~~~~~f-~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~ 240 (885)
..+.++.|+|++|+|||||+..++.... +..+.. ..++|++....+.... +..+++..+..... .....
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~-i~~i~q~~~~~~~~v~~ni~~~~~~~ 207 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNRGLDPDEVLKHIYVARAFN 207 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHH-HHHHHHTTTCCHHHHGGGEEEEECCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHH-HHHHHHHcCCCHHHHhhCEEEEecCC
Confidence 5779999999999999999999988752 111111 2358887665543333 33455555443210 00111
Q ss_pred ---hhHHHHHHHHHhc------CCCeEEEEecCCCccc
Q 045686 241 ---EDGRANEILSNLR------GKKFVLLLDDVWERLD 269 (885)
Q Consensus 241 ---~~~~~~~l~~~l~------~k~~LlVLDdv~~~~~ 269 (885)
..++...+...+. .+.-+||+|.+....+
T Consensus 208 ~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld 245 (349)
T 1pzn_A 208 SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFR 245 (349)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHH
T ss_pred hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhh
Confidence 1223334444443 4678999999976543
No 325
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=95.67 E-value=0.012 Score=70.37 Aligned_cols=122 Identities=16% Similarity=0.068 Sum_probs=60.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhcc-CCCCcc--EEEEEEEcCcccHHHHHHHHHHHcCCCccc-cCCCChhHHHH
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRD-TGHDFD--LVIWVKVSRDANLEKIQESILRRFEIPDQM-WIGKDEDGRAN 246 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~-~~~~f~--~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~ 246 (885)
+.+.+++|+|+.|.||||+.+.+.--... ..+.|- ....+.+-+ .++..+|..... ...+.......
T Consensus 660 ~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~~~~~d---------~i~~~ig~~d~l~~~lStf~~e~~ 730 (934)
T 3thx_A 660 DKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVD---------CILARVGAGDSQLKGVSTFMAEML 730 (934)
T ss_dssp TTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEEEECCS---------EEEEECC---------CHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccccchHHH---------HHHHhcCchhhHHHhHhhhHHHHH
Confidence 45789999999999999999998321100 001111 011111100 011111111100 01112222233
Q ss_pred HHHHHh--cCCCeEEEEecCCCccccccc-cccc-cccc-cCCCCCEEEEEcCChhHHhh
Q 045686 247 EILSNL--RGKKFVLLLDDVWERLDLSKV-GVSD-LLDD-SSQTGSKIVFTTRSEEVCGE 301 (885)
Q Consensus 247 ~l~~~l--~~k~~LlVLDdv~~~~~~~~~-~~~~-~l~~-~~~~gs~IivTTR~~~v~~~ 301 (885)
.+...+ ..++-|++||++....|...- .... .+.. ....|++||++|++.+++..
T Consensus 731 ~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~l 790 (934)
T 3thx_A 731 ETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTAL 790 (934)
T ss_dssp HHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGG
T ss_pred HHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHH
Confidence 344444 567899999999877654321 1100 0000 12358999999999887654
No 326
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.65 E-value=0.0065 Score=58.50 Aligned_cols=27 Identities=30% Similarity=0.362 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
..+.+++|+|++|+|||||++.++...
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhcc
Confidence 457899999999999999999998763
No 327
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.59 E-value=0.024 Score=59.76 Aligned_cols=94 Identities=15% Similarity=0.213 Sum_probs=57.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhcc-----------CCCCc--cEEEEEEEcCcccHHHHHHHHHHHcCCCccc--
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRD-----------TGHDF--DLVIWVKVSRDANLEKIQESILRRFEIPDQM-- 235 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~-----------~~~~f--~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~-- 235 (885)
....++.|+|.+|+||||||..++..... ..+.. ..++|++....++..++. ++++.++.....
T Consensus 96 ~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~-~~~~~~g~~~~~~~ 174 (322)
T 2i1q_A 96 ESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIM-QMAEHAGIDGQTVL 174 (322)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHH-HHHHHHTCCHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHH-HHHHHcCCCHHHHh
Confidence 46789999999999999999998865311 00111 478899888777666655 345666654210
Q ss_pred -----cCCCChhH---HHHHHHHHhcC--CCeEEEEecCC
Q 045686 236 -----WIGKDEDG---RANEILSNLRG--KKFVLLLDDVW 265 (885)
Q Consensus 236 -----~~~~~~~~---~~~~l~~~l~~--k~~LlVLDdv~ 265 (885)
....+.++ ....+...+.. +.-+||+|.+.
T Consensus 175 ~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 214 (322)
T 2i1q_A 175 DNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLT 214 (322)
T ss_dssp HTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSS
T ss_pred cCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcH
Confidence 01122222 33344555543 45688888875
No 328
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.59 E-value=0.056 Score=58.62 Aligned_cols=27 Identities=33% Similarity=0.566 Sum_probs=24.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 045686 172 NEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (885)
Q Consensus 172 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 198 (885)
++.+|.++|.+|+||||++..++....
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 468999999999999999999988775
No 329
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.58 E-value=0.064 Score=58.19 Aligned_cols=92 Identities=16% Similarity=0.077 Sum_probs=52.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcC-cccHHHHHHHHHHHcCCCcccc-CCCChhHHHHHHH
Q 045686 172 NEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSR-DANLEKIQESILRRFEIPDQMW-IGKDEDGRANEIL 249 (885)
Q Consensus 172 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~ 249 (885)
...+|.++|++|+||||++..++...... .. .+..+.... .......+.......+.+.... ...+.........
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~--G~-kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al 172 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKR--GY-KVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGV 172 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHT--TC-CEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CC-eEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHH
Confidence 46899999999999999999998877532 22 244444332 1122333445556666644211 1223333333333
Q ss_pred HHhc-CCCeEEEEecCCC
Q 045686 250 SNLR-GKKFVLLLDDVWE 266 (885)
Q Consensus 250 ~~l~-~k~~LlVLDdv~~ 266 (885)
..+. ...-++|+|-...
T Consensus 173 ~~a~~~~~DvvIIDTaGr 190 (433)
T 3kl4_A 173 DIFVKNKMDIIIVDTAGR 190 (433)
T ss_dssp HHTTTTTCSEEEEEECCC
T ss_pred HHHHhcCCCEEEEECCCC
Confidence 3333 4456778887753
No 330
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=95.55 E-value=0.071 Score=56.61 Aligned_cols=164 Identities=7% Similarity=-0.065 Sum_probs=94.9
Q ss_pred HHHHhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHHHcCCCccccCCCChhH
Q 045686 164 VWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILRRFEIPDQMWIGKDEDG 243 (885)
Q Consensus 164 l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 243 (885)
+.+.+...-.+++.++|+.|.||++.++.+...... ..|+....+.+....++.+
T Consensus 9 l~~~l~~~~~~~yl~~G~e~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~----------------------- 63 (343)
T 1jr3_D 9 LRAQLNEGLRAAYLLLGNDPLLLQESQDAVRQVAAA--QGFEEHHTFSIDPNTDWNA----------------------- 63 (343)
T ss_dssp HHHHHHHCCCSEEEEEESCHHHHHHHHHHHHHHHHH--HTCCEEEEEECCTTCCHHH-----------------------
T ss_pred HHHHHhcCCCcEEEEECCcHHHHHHHHHHHHHHHHh--CCCCeeEEEEecCCCCHHH-----------------------
Confidence 333444345679999999999999999999886532 2232211122222223332
Q ss_pred HHHHHHH-HhcCCCeEEEEecCCC-c--cccccccccccccccCCCCCEEEEEcCC-------hhHHhhh-cccceeecc
Q 045686 244 RANEILS-NLRGKKFVLLLDDVWE-R--LDLSKVGVSDLLDDSSQTGSKIVFTTRS-------EEVCGEM-GARRRFRVE 311 (885)
Q Consensus 244 ~~~~l~~-~l~~k~~LlVLDdv~~-~--~~~~~~~~~~~l~~~~~~gs~IivTTR~-------~~v~~~~-~~~~~~~l~ 311 (885)
+...+.. -+-+++-++|+|++.. . .....+...+. ....++.+|++|.. ..+...+ .....+...
T Consensus 64 l~~~~~~~plf~~~kvvii~~~~~kl~~~~~~aLl~~le---~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~ 140 (343)
T 1jr3_D 64 IFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTG---LLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQ 140 (343)
T ss_dssp HHHHHHHHHHCCSCEEEEEECCSSCCCTTHHHHHHHHHT---TCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEEC
T ss_pred HHHHhcCcCCccCCeEEEEECCCCCCChHHHHHHHHHHh---cCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEee
Confidence 2222221 2345677889999865 2 22222221111 23346666665532 2333332 234678999
Q ss_pred CCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCchhHHHHH
Q 045686 312 CLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGLPLALVTI 358 (885)
Q Consensus 312 ~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~ 358 (885)
+++.++....+.+.+.......+ .+.+..+++.++|...++...
T Consensus 141 ~l~~~~l~~~l~~~~~~~g~~i~---~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 141 TPEQAQLPRWVAARAKQLNLELD---DAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp CCCTTHHHHHHHHHHHHTTCEEC---HHHHHHHHHSSTTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhchHHHHHHHH
Confidence 99999999988887743332222 245788999999988877653
No 331
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.55 E-value=0.046 Score=58.93 Aligned_cols=96 Identities=15% Similarity=0.181 Sum_probs=56.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhcc---CCCCccEEEEEEEcCcccHHHHHHHHHHHcCCCccc-------cCCCC
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRD---TGHDFDLVIWVKVSRDANLEKIQESILRRFEIPDQM-------WIGKD 240 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~---~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~ 240 (885)
....++.|+|++|+|||||+..++-.... ....-..++|++....+....+ ..+++.++..... .....
T Consensus 176 ~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl~~~~vleni~~~~~~~ 254 (400)
T 3lda_A 176 ETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGLDPDDALNNVAYARAYN 254 (400)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCCChHhHhhcEEEeccCC
Confidence 46789999999999999999977533211 0112346888887665555443 3466777654310 01122
Q ss_pred hhH---HHHHHHHHh-cCCCeEEEEecCCCc
Q 045686 241 EDG---RANEILSNL-RGKKFVLLLDDVWER 267 (885)
Q Consensus 241 ~~~---~~~~l~~~l-~~k~~LlVLDdv~~~ 267 (885)
... ....+...+ ..+.-+||+|.+...
T Consensus 255 ~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~ 285 (400)
T 3lda_A 255 ADHQLRLLDAAAQMMSESRFSLIVVDSVMAL 285 (400)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEEETGGGG
T ss_pred hHHHHHHHHHHHHHHHhcCCceEEecchhhh
Confidence 222 222233333 246789999998543
No 332
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.52 E-value=0.014 Score=61.37 Aligned_cols=107 Identities=14% Similarity=0.082 Sum_probs=61.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHHHcCCCcc-ccCCCChhHHHHHHHH
Q 045686 172 NEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILRRFEIPDQ-MWIGKDEDGRANEILS 250 (885)
Q Consensus 172 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~-~~~~~~~~~~~~~l~~ 250 (885)
...+++|+|+.|+|||||++.+....... .+.+.+.-....... . .... .............+..
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~~~~----~g~i~i~~~~e~~~~--------~--~~~~i~~~~ggg~~~r~~la~ 235 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFIPKE----ERIISIEDTEEIVFK--------H--HKNYTQLFFGGNITSADCLKS 235 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGSCTT----SCEEEEESSCCCCCS--------S--CSSEEEEECBTTBCHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcCC----CcEEEECCeeccccc--------c--chhEEEEEeCCChhHHHHHHH
Confidence 45789999999999999999999876432 234444321111100 0 0000 0000023445567788
Q ss_pred HhcCCCeEEEEecCCCccccccccccccccccCCCCCEEEEEcCChhH
Q 045686 251 NLRGKKFVLLLDDVWERLDLSKVGVSDLLDDSSQTGSKIVFTTRSEEV 298 (885)
Q Consensus 251 ~l~~k~~LlVLDdv~~~~~~~~~~~~~~l~~~~~~gs~IivTTR~~~v 298 (885)
.+..++-++++|++.+...++.+. . ....+..+|+||+..+.
T Consensus 236 aL~~~p~ilildE~~~~e~~~~l~-~-----~~~g~~tvi~t~H~~~~ 277 (330)
T 2pt7_A 236 CLRMRPDRIILGELRSSEAYDFYN-V-----LCSGHKGTLTTLHAGSS 277 (330)
T ss_dssp HTTSCCSEEEECCCCSTHHHHHHH-H-----HHTTCCCEEEEEECSSH
T ss_pred HhhhCCCEEEEcCCChHHHHHHHH-H-----HhcCCCEEEEEEcccHH
Confidence 888899999999998742222111 1 12223347888887653
No 333
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=95.46 E-value=0.013 Score=73.51 Aligned_cols=67 Identities=19% Similarity=0.210 Sum_probs=40.6
Q ss_pred hhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccccCCCCCEEEEEcCChhHHhhhcccceeec
Q 045686 241 EDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDDSSQTGSKIVFTTRSEEVCGEMGARRRFRV 310 (885)
Q Consensus 241 ~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~gs~IivTTR~~~v~~~~~~~~~~~l 310 (885)
.+...-.+.+.+-.++-+||||++.+..|........ .+. ....|..||++|++.+.... .++++.+
T Consensus 1175 Gq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~-~~~~~~tvi~isH~l~~i~~--~dri~vl 1242 (1284)
T 3g5u_A 1175 GQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALD-KAREGRTCIVIAHRLSTIQN--ADLIVVI 1242 (1284)
T ss_dssp HHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHH-HHSSSSCEEEECSCTTGGGS--CSEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHH-HhCCCCEEEEEecCHHHHHc--CCEEEEE
Confidence 3444445778888888899999999887754321111 111 22347788888888765543 3444444
No 334
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.46 E-value=0.014 Score=70.39 Aligned_cols=46 Identities=33% Similarity=0.356 Sum_probs=37.2
Q ss_pred CccchhHHHHHHHHHhhcC---------CCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 045686 153 KTVGLDSIISEVWRCIEDH---------NEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (885)
Q Consensus 153 ~~vgr~~~~~~l~~~L~~~---------~~~vi~I~G~gG~GKTtLa~~v~~~~~ 198 (885)
.++|.+..++.+...+... ....+.|+|++|+|||++|+.+++...
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~ 613 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF 613 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4689999888888877321 225789999999999999999998763
No 335
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=95.39 E-value=0.01 Score=71.99 Aligned_cols=175 Identities=11% Similarity=0.133 Sum_probs=80.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhhccC--CCCc--cEEEEEEEcCcccHHHHHHHHHHHcCCCccccC-CCCh-hHHH-
Q 045686 173 EKVIGLYGMGGVGKTTLLKKLNNKFRDT--GHDF--DLVIWVKVSRDANLEKIQESILRRFEIPDQMWI-GKDE-DGRA- 245 (885)
Q Consensus 173 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~--~~~f--~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~-~~~~-~~~~- 245 (885)
+.+++|+|+.|.||||+.+.+ .-.... -+.| .....+++.+. |+..+|....... .... .++.
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i-Gl~~~~aqiG~~Vpq~~~~l~v~d~---------I~~rig~~d~~~~~~stf~~em~~ 858 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA-GLLAVMAQMGCYVPAEVCRLTPIDR---------VFTRLGASDRIMSGESTFFVELSE 858 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH-HHHHHHHTTTCCEESSEEEECCCSB---------EEEECC---------CHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHH-HHHHHHhheeEEeccCcCCCCHHHH---------HHHHcCCHHHHhhchhhhHHHHHH
Confidence 689999999999999999998 332110 1111 11112221111 0111111110000 0011 1111
Q ss_pred HHHHHHhcCCCeEEEEecCCCcccccc-cccc-cccccc-CCCCCEEEEEcCChhHHhhhccccee---eccCCChHHHH
Q 045686 246 NEILSNLRGKKFVLLLDDVWERLDLSK-VGVS-DLLDDS-SQTGSKIVFTTRSEEVCGEMGARRRF---RVECLSPEAAL 319 (885)
Q Consensus 246 ~~l~~~l~~k~~LlVLDdv~~~~~~~~-~~~~-~~l~~~-~~~gs~IivTTR~~~v~~~~~~~~~~---~l~~L~~~~~~ 319 (885)
-.+...+..++-|++||++....+... .... -.+... ...|++||++|++.+.+........+ ++.........
T Consensus 859 ~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~~g~~~~~~~~~~~ 938 (1022)
T 2o8b_B 859 TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACMVENECE 938 (1022)
T ss_dssp HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEEEEEEEEC------
T ss_pred HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceeecCeEEEEEecCcc
Confidence 122334567889999999977655332 1100 011111 22488999999998887654332211 22211111111
Q ss_pred HHHHH-------HhcCcccCCccchHHHHHHHHHHhCCchhHHHHHHHHHhc
Q 045686 320 DLFRY-------KVGEDVYSSHFEISNLAQTVVEECRGLPLALVTIGHAMAS 364 (885)
Q Consensus 320 ~Lf~~-------~~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~l~~ 364 (885)
+ +.. ..... . .. ...|-++++.+ |+|-.+..-|..+..
T Consensus 939 ~-~~~~~l~~ly~l~~G-~-~~---~Sygi~vA~l~-Glp~~vi~rA~~~~~ 983 (1022)
T 2o8b_B 939 D-PSQETITFLYKFIKG-A-CP---KSYGFNAARLA-NLPEEVIQKGHRKAR 983 (1022)
T ss_dssp --------CEEEEEESS-C-CC---CCHHHHHHHHT-TCCHHHHHHHHHHHH
T ss_pred c-CCCCceEEEeeecCC-C-CC---CCHHHHHHHHc-CCCHHHHHHHHHHHH
Confidence 1 111 11111 1 11 23578888765 799888776665543
No 336
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.39 E-value=0.0088 Score=56.97 Aligned_cols=26 Identities=31% Similarity=0.445 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 045686 172 NEKVIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 172 ~~~vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
.+++++|+|++|+|||||++.+....
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45799999999999999999998765
No 337
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.36 E-value=0.014 Score=61.34 Aligned_cols=52 Identities=15% Similarity=0.079 Sum_probs=35.3
Q ss_pred HHHHhh-cCCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcc
Q 045686 164 VWRCIE-DHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDA 216 (885)
Q Consensus 164 l~~~L~-~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~ 216 (885)
+++.+. -.++..++|+|++|+|||||++.+.+........+.+ +++-+.+..
T Consensus 164 aID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~-I~~lIGER~ 216 (422)
T 3ice_A 164 VLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVL-MVLLIDERP 216 (422)
T ss_dssp HHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEE-EEEEESSCH
T ss_pred eeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeE-EEEEecCCh
Confidence 344443 2667899999999999999999998765322223443 456676653
No 338
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.35 E-value=0.0093 Score=58.12 Aligned_cols=26 Identities=23% Similarity=0.413 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 045686 172 NEKVIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 172 ~~~vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
.+.+++|+|++|+|||||++.+....
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 56799999999999999999998764
No 339
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.33 E-value=0.0095 Score=56.55 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 045686 173 EKVIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 173 ~~vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
..+|.|+|++|+||||+|+.+....
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3689999999999999999998876
No 340
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.32 E-value=0.017 Score=51.39 Aligned_cols=52 Identities=21% Similarity=0.342 Sum_probs=27.4
Q ss_pred EEecCCCCCCC--cCchhhhcccccceeeccCCcccccChh-hhccccccEeecCCcc
Q 045686 567 VLDLSYNLDLN--QLPEEIGRLKNLHHLNLSNTSIGCLPTA-IKRLIKLKVLLLDGIQ 621 (885)
Q Consensus 567 ~L~Ls~~~~i~--~lp~~i~~L~~L~~L~Ls~~~i~~lp~~-i~~L~~L~~L~l~~~~ 621 (885)
+++.+++ .++ .+|..+. .+|++|+|++|+|..+|.. +..+++|++|+|++|.
T Consensus 12 ~v~Cs~~-~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRR-GLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSS-CCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCC-CCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 4555555 454 5554321 2455566666655555544 4455555555555553
No 341
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.32 E-value=0.01 Score=57.66 Aligned_cols=30 Identities=37% Similarity=0.442 Sum_probs=26.3
Q ss_pred hcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 045686 169 EDHNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (885)
Q Consensus 169 ~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 198 (885)
....+.+|+|+|++|+||||+++.+.....
T Consensus 21 ~~~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 21 LDQKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp HTSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345789999999999999999999988764
No 342
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.30 E-value=0.0098 Score=57.72 Aligned_cols=27 Identities=41% Similarity=0.373 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
.+..+|.|+|++|+||||+|+.++...
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 356799999999999999999999876
No 343
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=95.27 E-value=0.033 Score=69.89 Aligned_cols=135 Identities=17% Similarity=0.197 Sum_probs=73.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCC--ccE--------------EEEEEEcCcc------------------
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHD--FDL--------------VIWVKVSRDA------------------ 216 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~--f~~--------------~~wv~v~~~~------------------ 216 (885)
.++.+++|+|+.|+|||||++.+..-..+..+. +++ +.+ |.|++
T Consensus 414 ~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~--v~Q~~~l~~~ti~eNi~~g~~~~ 491 (1284)
T 3g5u_A 414 KSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGV--VSQEPVLFATTIAENIRYGREDV 491 (1284)
T ss_dssp CTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEE--ECSSCCCCSSCHHHHHHHHCSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEE--EcCCCccCCccHHHHHhcCCCCC
Confidence 678999999999999999999998766432111 111 222 22322
Q ss_pred cHHHHH--------HHHHHHcCCCccc------cCCCChhHHHHHHHHHhcCCCeEEEEecCCCccccccccccc-cccc
Q 045686 217 NLEKIQ--------ESILRRFEIPDQM------WIGKDEDGRANEILSNLRGKKFVLLLDDVWERLDLSKVGVSD-LLDD 281 (885)
Q Consensus 217 ~~~~~~--------~~i~~~l~~~~~~------~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~~~~~~-~l~~ 281 (885)
+.+++. .+.+..+....+. ..-+..+...-.+.+.+-.++-++|||++.+..|........ .+.
T Consensus 492 ~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~- 570 (1284)
T 3g5u_A 492 TMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALD- 570 (1284)
T ss_dssp CHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHH-
Confidence 111111 1122222111110 011223334445777777788899999998877654321111 111
Q ss_pred cCCCCCEEEEEcCChhHHhhhcccceeec
Q 045686 282 SSQTGSKIVFTTRSEEVCGEMGARRRFRV 310 (885)
Q Consensus 282 ~~~~gs~IivTTR~~~v~~~~~~~~~~~l 310 (885)
....|..+|++|++.+.... .++++.+
T Consensus 571 ~~~~~~t~i~itH~l~~i~~--~d~i~vl 597 (1284)
T 3g5u_A 571 KAREGRTTIVIAHRLSTVRN--ADVIAGF 597 (1284)
T ss_dssp HHHTTSEEEEECSCHHHHTT--CSEEEEC
T ss_pred HHcCCCEEEEEecCHHHHHc--CCEEEEE
Confidence 12247788888988766543 3444444
No 344
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.25 E-value=0.01 Score=57.62 Aligned_cols=27 Identities=22% Similarity=0.425 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
..+.+|+|+|++|+||||+++.++...
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 467899999999999999999998765
No 345
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.23 E-value=0.015 Score=51.90 Aligned_cols=56 Identities=20% Similarity=0.332 Sum_probs=48.1
Q ss_pred ceeeccCCccc--ccChhhhccccccEeecCCcccccccCCcccccCcccceecccccccc
Q 045686 590 HHLNLSNTSIG--CLPTAIKRLIKLKVLLLDGIQCHLSIPEGVISSLSSLQVFSCFSTELV 648 (885)
Q Consensus 590 ~~L~Ls~~~i~--~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 648 (885)
..++.+++.++ .+|..+. .+|++|+|++|. +..+|.++|..+++|+.|++.+|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCc-CCccChhhhhhccccCEEEecCCCee
Confidence 47888899888 8996543 579999999997 89999998999999999999998653
No 346
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=95.23 E-value=0.0085 Score=70.25 Aligned_cols=117 Identities=19% Similarity=0.154 Sum_probs=59.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhhc-cCCCCccE--EEEEEEcCcccHHHHHHHHHHHcCCCcccc-CCCChhHHHHHH
Q 045686 173 EKVIGLYGMGGVGKTTLLKKLNNKFR-DTGHDFDL--VIWVKVSRDANLEKIQESILRRFEIPDQMW-IGKDEDGRANEI 248 (885)
Q Consensus 173 ~~vi~I~G~gG~GKTtLa~~v~~~~~-~~~~~f~~--~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l 248 (885)
+.+++|+|++|+||||+.+.++.-.. ...+.|-. ..-+.+-.. +...++...... ..+........+
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa~~~~i~~v~~---------i~~~~~~~d~l~~g~S~~~~e~~~l 646 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDG---------IYTRIGASDDLAGGKSTFMVEMEEV 646 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCSE---------EEEECCC------CCSHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhhhhhcccCceeehhccceeeHHH---------hhccCCHHHHHHhcccHHHHHHHHH
Confidence 68999999999999999999876432 11122210 011100000 000111110000 011112222234
Q ss_pred HHHh--cCCCeEEEEecC---CCccccccc--cccccccccCCCCCEEEEEcCChhHHhh
Q 045686 249 LSNL--RGKKFVLLLDDV---WERLDLSKV--GVSDLLDDSSQTGSKIVFTTRSEEVCGE 301 (885)
Q Consensus 249 ~~~l--~~k~~LlVLDdv---~~~~~~~~~--~~~~~l~~~~~~gs~IivTTR~~~v~~~ 301 (885)
...+ ..++-|++||++ .+..|.... ...-.+. . .|..||++|++.+++..
T Consensus 647 a~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~-~--~g~~vl~~TH~~~l~~~ 703 (765)
T 1ewq_A 647 ALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALH-E--RRAYTLFATHYFELTAL 703 (765)
T ss_dssp HHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHH-H--HTCEEEEECCCHHHHTC
T ss_pred HHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHH-h--CCCEEEEEeCCHHHHHh
Confidence 4555 678999999999 554443221 1111111 1 58899999999887653
No 347
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.21 E-value=0.029 Score=70.64 Aligned_cols=29 Identities=24% Similarity=0.452 Sum_probs=25.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhcc
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRD 199 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~ 199 (885)
.++..|+|+|+.|+|||||++.+..-..+
T Consensus 1103 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p 1131 (1321)
T 4f4c_A 1103 EPGQTLALVGPSGCGKSTVVALLERFYDT 1131 (1321)
T ss_dssp CTTCEEEEECSTTSSTTSHHHHHTTSSCC
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCccC
Confidence 67889999999999999999999876643
No 348
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.19 E-value=0.01 Score=55.99 Aligned_cols=24 Identities=29% Similarity=0.270 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 045686 174 KVIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 174 ~vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
.+|+|.|++|+||||+|+.+....
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998876
No 349
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.17 E-value=0.065 Score=58.72 Aligned_cols=29 Identities=41% Similarity=0.598 Sum_probs=25.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhcc
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRD 199 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~ 199 (885)
..+.+++|+|.+|+|||||++.++.....
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll~~ 319 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQFEQ 319 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHhhh
Confidence 35789999999999999999999987753
No 350
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=95.16 E-value=0.023 Score=66.49 Aligned_cols=68 Identities=12% Similarity=0.216 Sum_probs=42.4
Q ss_pred hhHHHHHHHHHhcCC---CeEEEEecCCCccccccccccc-cccccCCCCCEEEEEcCChhHHhhhcccceeec
Q 045686 241 EDGRANEILSNLRGK---KFVLLLDDVWERLDLSKVGVSD-LLDDSSQTGSKIVFTTRSEEVCGEMGARRRFRV 310 (885)
Q Consensus 241 ~~~~~~~l~~~l~~k---~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~gs~IivTTR~~~v~~~~~~~~~~~l 310 (885)
.+...-.+.+.|..+ +-+|+||+.....|........ .+......|..||++|++.+++.. .++++.|
T Consensus 547 G~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~~--~d~i~~l 618 (670)
T 3ux8_A 547 GEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKT--ADYIIDL 618 (670)
T ss_dssp HHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTT--CSEEEEE
T ss_pred HHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHh--CCEEEEe
Confidence 344455677777654 4699999999887654331111 111122347899999999987653 4556655
No 351
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.14 E-value=0.012 Score=57.52 Aligned_cols=27 Identities=30% Similarity=0.308 Sum_probs=24.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
..+.+++|+|++|+|||||++.+....
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 457899999999999999999998876
No 352
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.13 E-value=0.0097 Score=56.17 Aligned_cols=25 Identities=32% Similarity=0.469 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 045686 173 EKVIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 173 ~~vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
..+|+|+|++|+||||+++.++...
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4679999999999999999998875
No 353
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.12 E-value=0.046 Score=54.86 Aligned_cols=41 Identities=22% Similarity=0.181 Sum_probs=30.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcC
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSR 214 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~ 214 (885)
..+.++.|.|++|+||||||..++...... -..++|++...
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~---~~~v~~~~~e~ 61 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWNGLKM---GEPGIYVALEE 61 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHHHHT---TCCEEEEESSS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEEccC
Confidence 457899999999999999998887665321 23467776543
No 354
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=95.12 E-value=0.023 Score=67.04 Aligned_cols=68 Identities=15% Similarity=0.193 Sum_probs=44.0
Q ss_pred hHHHHHHHHHhcCC---CeEEEEecCCCccccccccccc-cccccCCCCCEEEEEcCChhHHhhhcccceeecc
Q 045686 242 DGRANEILSNLRGK---KFVLLLDDVWERLDLSKVGVSD-LLDDSSQTGSKIVFTTRSEEVCGEMGARRRFRVE 311 (885)
Q Consensus 242 ~~~~~~l~~~l~~k---~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~gs~IivTTR~~~v~~~~~~~~~~~l~ 311 (885)
+...-.|.+.|..+ +-++|||+.....|........ .+......|..|||+|++.++.. . .++++.|.
T Consensus 735 ekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i~-~-aDrii~L~ 806 (842)
T 2vf7_A 735 EAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVA-A-SDWVLDIG 806 (842)
T ss_dssp HHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHT-T-CSEEEEEC
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHH-h-CCEEEEEC
Confidence 44444566777764 6999999999887765432211 11112235889999999998873 3 55666663
No 355
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.07 E-value=0.014 Score=54.00 Aligned_cols=27 Identities=30% Similarity=0.345 Sum_probs=24.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
.++.+++|+|+.|+|||||++.++.-.
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 677899999999999999999999876
No 356
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.04 E-value=0.012 Score=57.55 Aligned_cols=28 Identities=36% Similarity=0.427 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 198 (885)
.++.+|+|+|+.|+|||||++.+.....
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4568999999999999999999988753
No 357
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.03 E-value=0.082 Score=54.77 Aligned_cols=40 Identities=18% Similarity=0.206 Sum_probs=30.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEE
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKV 212 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v 212 (885)
..+.+++|+|++|+|||||++.++.......+ ..++|+..
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G--~~v~~~~~ 72 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQWGTAMG--KKVGLAML 72 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHHHTSC--CCEEEEES
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcC--CeEEEEeC
Confidence 56789999999999999999999887753211 13556553
No 358
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.03 E-value=0.081 Score=55.31 Aligned_cols=53 Identities=13% Similarity=0.181 Sum_probs=38.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHHH
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILRR 228 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~ 228 (885)
..+.++.|.|.+|+||||+|..++...... + ..++|++.. .+..++...+...
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a~~-g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNMSDN-D--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHHTT-T--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHc-C--CeEEEEECC--CCHHHHHHHHHHH
Confidence 567899999999999999999998776422 2 567777654 4556666666554
No 359
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.03 E-value=0.014 Score=55.11 Aligned_cols=26 Identities=19% Similarity=0.517 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 045686 172 NEKVIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 172 ~~~vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
...+|+|+|++|+||||+++.+....
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 46799999999999999999998764
No 360
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.00 E-value=0.012 Score=55.68 Aligned_cols=20 Identities=50% Similarity=0.652 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCcHHHHHHHH
Q 045686 174 KVIGLYGMGGVGKTTLLKKL 193 (885)
Q Consensus 174 ~vi~I~G~gG~GKTtLa~~v 193 (885)
.+|+|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47999999999999999999
No 361
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.98 E-value=0.013 Score=57.18 Aligned_cols=27 Identities=30% Similarity=0.481 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
..+.+++|+|++|+|||||++.+....
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 567899999999999999999998866
No 362
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.98 E-value=0.075 Score=57.53 Aligned_cols=90 Identities=17% Similarity=0.176 Sum_probs=50.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHH--HHHHHHHHcCCCcccc-CCCChhHHHHHH
Q 045686 172 NEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEK--IQESILRRFEIPDQMW-IGKDEDGRANEI 248 (885)
Q Consensus 172 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~--~~~~i~~~l~~~~~~~-~~~~~~~~~~~l 248 (885)
...+++|+|++|+||||++..++...... .. .+..+.. +.+.... .+.......+++.-.. ...+..++....
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~--g~-~Vllvd~-D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~ 172 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK--GR-RPLLVAA-DTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRV 172 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT--TC-CEEEEEC-CSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CC-eEEEeec-cccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHH
Confidence 46899999999999999999999887532 22 2444443 3333322 2344455555543110 123344443434
Q ss_pred HHHhc-CCCeEEEEecCC
Q 045686 249 LSNLR-GKKFVLLLDDVW 265 (885)
Q Consensus 249 ~~~l~-~k~~LlVLDdv~ 265 (885)
.+.++ ..--++|+|-.-
T Consensus 173 l~~~~~~~~DvVIIDTaG 190 (425)
T 2ffh_A 173 EEKARLEARDLILVDTAG 190 (425)
T ss_dssp HHHHHHTTCSEEEEECCC
T ss_pred HHHHHHCCCCEEEEcCCC
Confidence 44443 333377778653
No 363
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.93 E-value=0.015 Score=56.79 Aligned_cols=26 Identities=35% Similarity=0.400 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 045686 172 NEKVIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 172 ~~~vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
.+.+++|+|++|+||||+++.+....
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 46799999999999999999998765
No 364
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.91 E-value=0.0024 Score=61.04 Aligned_cols=26 Identities=27% Similarity=0.224 Sum_probs=21.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhhc
Q 045686 173 EKVIGLYGMGGVGKTTLLKKLNNKFR 198 (885)
Q Consensus 173 ~~vi~I~G~gG~GKTtLa~~v~~~~~ 198 (885)
..++.|+|+.|+||||++..++.+..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~ 28 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYK 28 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46889999999999999977766653
No 365
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=94.91 E-value=0.19 Score=54.50 Aligned_cols=101 Identities=19% Similarity=0.319 Sum_probs=62.4
Q ss_pred HHHHhhc-CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcc-cHHHHHHHHHHHcCCC------ccc
Q 045686 164 VWRCIED-HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDA-NLEKIQESILRRFEIP------DQM 235 (885)
Q Consensus 164 l~~~L~~-~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~i~~~l~~~------~~~ 235 (885)
.++.+.- .++.-++|+|.+|+|||+|++++.+... +.+-+.++++-+.+.. .+.++.+++.+.=.+. ...
T Consensus 143 ~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~--~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rtv 220 (482)
T 2ck3_D 143 VVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVA--KAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVA 220 (482)
T ss_dssp HHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHTT--TTCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEE
T ss_pred EEecccccccCCeeeeecCCCCChHHHHHHHHHhhH--hhCCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceEE
Confidence 3444432 5778899999999999999999988753 2334567778787754 4566777776653332 100
Q ss_pred ----cCCCChhHH------HHHHHHHh---cCCCeEEEEecCCC
Q 045686 236 ----WIGKDEDGR------ANEILSNL---RGKKFVLLLDDVWE 266 (885)
Q Consensus 236 ----~~~~~~~~~------~~~l~~~l---~~k~~LlVLDdv~~ 266 (885)
..+.....+ .-.+.+++ +++.+|+++||+..
T Consensus 221 vV~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~DsitR 264 (482)
T 2ck3_D 221 LVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFR 264 (482)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTHH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 011111111 11234444 36899999999853
No 366
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.91 E-value=0.015 Score=55.64 Aligned_cols=28 Identities=32% Similarity=0.510 Sum_probs=24.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 198 (885)
....+|.|.|++|+||||+++.++....
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4568999999999999999999998874
No 367
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.90 E-value=0.011 Score=56.53 Aligned_cols=25 Identities=44% Similarity=0.639 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhc
Q 045686 174 KVIGLYGMGGVGKTTLLKKLNNKFR 198 (885)
Q Consensus 174 ~vi~I~G~gG~GKTtLa~~v~~~~~ 198 (885)
++++|+|++|+|||||++.+.....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 6799999999999999999987663
No 368
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.87 E-value=0.12 Score=53.28 Aligned_cols=91 Identities=22% Similarity=0.141 Sum_probs=52.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcC-cccHHHHHHHHHHHcCCCccc-cCCCChhHHHHHHHH
Q 045686 173 EKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSR-DANLEKIQESILRRFEIPDQM-WIGKDEDGRANEILS 250 (885)
Q Consensus 173 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~~l~~ 250 (885)
..+++++|.+|+||||++..++...... + ..+.++.... .......+.......+.+.-. ....+..+......+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~-g--~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~ 174 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKK-G--FKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVE 174 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHT-T--CCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC-C--CeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHH
Confidence 6899999999999999999998877432 1 1244554432 122233344455555554211 012344455444444
Q ss_pred Hhc-CCCeEEEEecCCC
Q 045686 251 NLR-GKKFVLLLDDVWE 266 (885)
Q Consensus 251 ~l~-~k~~LlVLDdv~~ 266 (885)
.++ ..--++|+|-.-.
T Consensus 175 ~~~~~~~D~ViIDTpg~ 191 (297)
T 1j8m_F 175 KFLSEKMEIIIVDTAGR 191 (297)
T ss_dssp HHHHTTCSEEEEECCCS
T ss_pred HHHhCCCCEEEEeCCCC
Confidence 554 4445888887643
No 369
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.83 E-value=0.012 Score=56.98 Aligned_cols=26 Identities=42% Similarity=0.576 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 045686 172 NEKVIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 172 ~~~vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
.+++++|+|++|+|||||++.+....
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45789999999999999999998765
No 370
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.81 E-value=0.016 Score=54.96 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 045686 174 KVIGLYGMGGVGKTTLLKKLNN 195 (885)
Q Consensus 174 ~vi~I~G~gG~GKTtLa~~v~~ 195 (885)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999987
No 371
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.78 E-value=0.081 Score=54.60 Aligned_cols=89 Identities=16% Similarity=0.143 Sum_probs=50.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHH--HHHHHHHHHcCCCcccc-CCCChhHHHH-H
Q 045686 172 NEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLE--KIQESILRRFEIPDQMW-IGKDEDGRAN-E 247 (885)
Q Consensus 172 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~--~~~~~i~~~l~~~~~~~-~~~~~~~~~~-~ 247 (885)
...+++|+|.+|+||||++..++...... + ..+.++... ..... ..+....+..+++.-.. ...+..++.. .
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~-~--~~v~l~~~d-~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~ 172 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK-G--RRPLLVAAD-TQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRV 172 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHT-T--CCEEEEECC-SSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc-C--CeEEEecCC-cccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHH
Confidence 46899999999999999999999887532 1 124444432 22221 22334455555543210 1234444433 3
Q ss_pred HHHHhcCCCeEEEEecC
Q 045686 248 ILSNLRGKKFVLLLDDV 264 (885)
Q Consensus 248 l~~~l~~k~~LlVLDdv 264 (885)
+......+.-++|+|..
T Consensus 173 l~~~~~~~~D~viiDtp 189 (295)
T 1ls1_A 173 EEKARLEARDLILVDTA 189 (295)
T ss_dssp HHHHHHHTCCEEEEECC
T ss_pred HHHHHhCCCCEEEEeCC
Confidence 33333355668899987
No 372
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.76 E-value=0.016 Score=55.33 Aligned_cols=25 Identities=32% Similarity=0.321 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 045686 173 EKVIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 173 ~~vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
.+.|.|+|++|+||||+|+.++...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4688999999999999999998876
No 373
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.74 E-value=0.029 Score=55.53 Aligned_cols=40 Identities=23% Similarity=0.391 Sum_probs=31.2
Q ss_pred hHHHHHHHHHhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 045686 158 DSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 158 ~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
++..+.+...+......+|+|+|.+|+|||||+..+....
T Consensus 23 ~~~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 23 KRLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3344555555555678899999999999999999998875
No 374
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=94.74 E-value=0.019 Score=54.63 Aligned_cols=113 Identities=16% Similarity=0.048 Sum_probs=54.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcC---cccHHHHHHHHHHHcCCCcc----ccC--CCC----
Q 045686 174 KVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSR---DANLEKIQESILRRFEIPDQ----MWI--GKD---- 240 (885)
Q Consensus 174 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~---~~~~~~~~~~i~~~l~~~~~----~~~--~~~---- 240 (885)
..|-|++..|.||||+|--.+-+... ..+ .+.++.... ......++ +.++.... .+. ..+
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g--~G~-rV~~vQF~Kg~~~~gE~~~l----~~L~v~~~~~g~gf~~~~~~~~~~ 101 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVG--HGK-NVGVVQFIKGTWPNGERNLL----EPHGVEFQVMATGFTWETQNREAD 101 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHH--TTC-CEEEEESSCCSSCCHHHHHH----GGGTCEEEECCTTCCCCGGGHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHH--CCC-eEEEEEeeCCCCCccHHHHH----HhCCcEEEEcccccccCCCCcHHH
Confidence 44555555669999999888776631 222 345554332 22233333 33321110 011 111
Q ss_pred h---hHHHHHHHHHhcC-CCeEEEEecCCCc-----cccccccccccccccCCCCCEEEEEcCCh
Q 045686 241 E---DGRANEILSNLRG-KKFVLLLDDVWER-----LDLSKVGVSDLLDDSSQTGSKIVFTTRSE 296 (885)
Q Consensus 241 ~---~~~~~~l~~~l~~-k~~LlVLDdv~~~-----~~~~~~~~~~~l~~~~~~gs~IivTTR~~ 296 (885)
. .......++.+.+ +--|||||++... .+.+.+...+. .......||+|+|..
T Consensus 102 ~~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~---~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 102 TAACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALN---ARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHH---TSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHH---hCcCCCEEEEECCCC
Confidence 0 1111223444444 4459999998432 22222211111 233467899999985
No 375
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.73 E-value=0.0086 Score=64.27 Aligned_cols=113 Identities=17% Similarity=0.205 Sum_probs=61.7
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEE-EEEEcCcccHHHHHHHHHHHcCCCccccCCCChhHHHHHH
Q 045686 170 DHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVI-WVKVSRDANLEKIQESILRRFEIPDQMWIGKDEDGRANEI 248 (885)
Q Consensus 170 ~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~-wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l 248 (885)
-....+++|+|+.|+||||+++.+....... ..+.+ ++. +.... ..-...+.-.....+.+.......+
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~---~~g~I~~~e--~~~e~-----~~~~~~~~v~Q~~~g~~~~~~~~~l 202 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQT---KSYHIITIE--DPIEY-----VFKHKKSIVNQREVGEDTKSFADAL 202 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHHH---SCCEEEEEE--SSCCS-----CCCCSSSEEEEEEBTTTBSCSHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCcC---CCcEEEEec--ccHhh-----hhccCceEEEeeecCCCHHHHHHHH
Confidence 3567899999999999999999998866421 11222 221 11110 0000000000000001122335567
Q ss_pred HHHhcCCCeEEEEecCCCccccccccccccccccCCCCCEEEEEcCChhH
Q 045686 249 LSNLRGKKFVLLLDDVWERLDLSKVGVSDLLDDSSQTGSKIVFTTRSEEV 298 (885)
Q Consensus 249 ~~~l~~k~~LlVLDdv~~~~~~~~~~~~~~l~~~~~~gs~IivTTR~~~v 298 (885)
+..+...+-+|++|++.+....... +. ....|..|+.|++..++
T Consensus 203 ~~~L~~~pd~illdE~~d~e~~~~~---l~---~~~~g~~vi~t~H~~~~ 246 (372)
T 2ewv_A 203 RAALREDPDVIFVGEMRDLETVETA---LR---AAETGHLVFGTLHTNTA 246 (372)
T ss_dssp HHHTTSCCSEEEESCCCSHHHHHHH---HH---HHTTTCEEEECCCCCSH
T ss_pred HHHhhhCcCEEEECCCCCHHHHHHH---HH---HHhcCCEEEEEECcchH
Confidence 7888888889999999754332221 11 12346778888887654
No 376
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.72 E-value=0.03 Score=57.61 Aligned_cols=28 Identities=21% Similarity=0.183 Sum_probs=24.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 198 (885)
....+|+|+|+.|+||||||+.+.....
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4568999999999999999999988764
No 377
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=94.72 E-value=0.036 Score=66.11 Aligned_cols=121 Identities=14% Similarity=0.137 Sum_probs=58.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccC-CCCc--cEEEEEEEcCcccHHHHHHHHHHHcCCCccc-cCCCChhHHHH
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDT-GHDF--DLVIWVKVSRDANLEKIQESILRRFEIPDQM-WIGKDEDGRAN 246 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~-~~~f--~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~ 246 (885)
+.+.+++|+|+.|.||||+.+.+..-.... .+.| .....+.+.+. ++..++..... ........-..
T Consensus 671 ~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~d~---------i~~~ig~~d~l~~~~stfs~em~ 741 (918)
T 3thx_B 671 DSERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDG---------IFTRMGAADNIYKGRSTFMEELT 741 (918)
T ss_dssp TSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECCSE---------EEEEC----------CCHHHHHH
T ss_pred CCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHHHH---------HHHhCChHHHHHHhHHHhhHHHH
Confidence 457899999999999999999886321100 0111 00111111000 00011111000 00111111112
Q ss_pred HHHHHh--cCCCeEEEEecCCCccccccc-ccc-ccccc-cCCCCCEEEEEcCChhHHh
Q 045686 247 EILSNL--RGKKFVLLLDDVWERLDLSKV-GVS-DLLDD-SSQTGSKIVFTTRSEEVCG 300 (885)
Q Consensus 247 ~l~~~l--~~k~~LlVLDdv~~~~~~~~~-~~~-~~l~~-~~~~gs~IivTTR~~~v~~ 300 (885)
.+...+ ..++-|++||++....|...- ... ..+.. ....|+.||++|++.+++.
T Consensus 742 ~~~~il~~a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~ 800 (918)
T 3thx_B 742 DTAEIIRKATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCE 800 (918)
T ss_dssp HHHHHHHHCCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGG
T ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHH
Confidence 222222 467889999999887665322 111 01110 1245899999999988764
No 378
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.71 E-value=0.018 Score=55.32 Aligned_cols=26 Identities=31% Similarity=0.359 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 045686 172 NEKVIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 172 ~~~vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
...+|.|.|++|+||||+|+.+....
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999998765
No 379
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.69 E-value=0.019 Score=57.81 Aligned_cols=27 Identities=26% Similarity=0.358 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
..+.+|+|+|+.|+|||||++.+....
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 567899999999999999999998754
No 380
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.69 E-value=0.015 Score=57.39 Aligned_cols=27 Identities=48% Similarity=0.645 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
..+.+++|+|+.|+|||||++.+....
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 467899999999999999999998865
No 381
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.68 E-value=0.015 Score=56.65 Aligned_cols=27 Identities=37% Similarity=0.520 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
..+.+|.|+|++|+||||+++.+....
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 356789999999999999999998765
No 382
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.68 E-value=0.35 Score=53.37 Aligned_cols=52 Identities=13% Similarity=0.172 Sum_probs=36.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHH
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESIL 226 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~ 226 (885)
..+.++.|.|.+|+||||||..++...... .-..++|++... +...+...++
T Consensus 201 ~~G~liiI~G~pG~GKTtl~l~ia~~~~~~--~g~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAFALNIAQNVATK--TNENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp CTTCEEEEECCTTSCHHHHHHHHHHHHHHH--SSCCEEEEESSS--CHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHh--CCCcEEEEECCC--CHHHHHHHHH
Confidence 567899999999999999999998876421 112467766433 3455555543
No 383
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.67 E-value=0.019 Score=59.87 Aligned_cols=29 Identities=28% Similarity=0.320 Sum_probs=25.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhcc
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRD 199 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~ 199 (885)
..+.+|+|+|++|+|||||++.+..-...
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 56789999999999999999999987653
No 384
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.66 E-value=0.014 Score=56.65 Aligned_cols=25 Identities=20% Similarity=0.363 Sum_probs=22.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 045686 173 EKVIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 173 ~~vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
..+|+|.|++|+||||+|+.+....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998875
No 385
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.64 E-value=0.016 Score=55.53 Aligned_cols=22 Identities=41% Similarity=0.542 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 045686 174 KVIGLYGMGGVGKTTLLKKLNN 195 (885)
Q Consensus 174 ~vi~I~G~gG~GKTtLa~~v~~ 195 (885)
.+++|+|++|+||||+++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 6899999999999999999976
No 386
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.64 E-value=0.036 Score=57.97 Aligned_cols=43 Identities=23% Similarity=0.386 Sum_probs=32.4
Q ss_pred cchhHHHHHHHHHhh----cCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 045686 155 VGLDSIISEVWRCIE----DHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 155 vgr~~~~~~l~~~L~----~~~~~vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
|+.+...+++++.+. .+....|.|+|++|+||||+++.++...
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 445556666666653 3455679999999999999999998776
No 387
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.63 E-value=0.019 Score=56.47 Aligned_cols=28 Identities=18% Similarity=0.240 Sum_probs=24.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 198 (885)
..+.+++|+|++|+|||||++.+.....
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 4678999999999999999999988763
No 388
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=94.62 E-value=0.15 Score=60.85 Aligned_cols=70 Identities=16% Similarity=0.225 Sum_probs=44.7
Q ss_pred hhHHHHHHHHHhcCC---CeEEEEecCCCccccccccccc-cccccCCCCCEEEEEcCChhHHhhhcccceeeccC
Q 045686 241 EDGRANEILSNLRGK---KFVLLLDDVWERLDLSKVGVSD-LLDDSSQTGSKIVFTTRSEEVCGEMGARRRFRVEC 312 (885)
Q Consensus 241 ~~~~~~~l~~~l~~k---~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~gs~IivTTR~~~v~~~~~~~~~~~l~~ 312 (885)
.+...-.|.+.|..+ +-++|||+..+..|........ .+......|..||++|++.++... .++++.|.+
T Consensus 809 GErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~--ADrIivLgp 882 (916)
T 3pih_A 809 GEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKN--ADHIIDLGP 882 (916)
T ss_dssp HHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTT--CSEEEEEES
T ss_pred HHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHh--CCEEEEecC
Confidence 444445677777654 5799999999887765432211 111122347899999999988754 566666643
No 389
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.60 E-value=0.02 Score=55.89 Aligned_cols=27 Identities=37% Similarity=0.593 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
....+|+|+|++|+||||+|+.+....
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 346799999999999999999997754
No 390
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.60 E-value=0.019 Score=55.14 Aligned_cols=26 Identities=35% Similarity=0.475 Sum_probs=23.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhhc
Q 045686 173 EKVIGLYGMGGVGKTTLLKKLNNKFR 198 (885)
Q Consensus 173 ~~vi~I~G~gG~GKTtLa~~v~~~~~ 198 (885)
..+|.|.|++|+||||+++.+.....
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998763
No 391
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.60 E-value=0.019 Score=64.89 Aligned_cols=119 Identities=13% Similarity=0.048 Sum_probs=64.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHHHcCCCc--------ccc-----C
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILRRFEIPD--------QMW-----I 237 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~--------~~~-----~ 237 (885)
..+.+++|.|++|+|||||++.++...... + ..++++...+. ...+...+ ..++... ... .
T Consensus 279 ~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G--~~vi~~~~ee~--~~~l~~~~-~~~g~~~~~~~~~g~~~~~~~~p~ 352 (525)
T 1tf7_A 279 FKDSIILATGATGTGKTLLVSRFVENACAN-K--ERAILFAYEES--RAQLLRNA-YSWGMDFEEMERQNLLKIVCAYPE 352 (525)
T ss_dssp ESSCEEEEEECTTSSHHHHHHHHHHHHHTT-T--CCEEEEESSSC--HHHHHHHH-HTTSCCHHHHHHTTSEEECCCCGG
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-C--CCEEEEEEeCC--HHHHHHHH-HHcCCCHHHHHhCCCEEEEEeccc
Confidence 467899999999999999999999876432 1 12344443222 23333222 2233220 000 1
Q ss_pred CCChhHHH-HHHHHHhcCCCeEEEEecCCCccccc-----cccc-cccccccCCCCCEEEEEcCCh
Q 045686 238 GKDEDGRA-NEILSNLRGKKFVLLLDDVWERLDLS-----KVGV-SDLLDDSSQTGSKIVFTTRSE 296 (885)
Q Consensus 238 ~~~~~~~~-~~l~~~l~~k~~LlVLDdv~~~~~~~-----~~~~-~~~l~~~~~~gs~IivTTR~~ 296 (885)
..+..+.+ ..+...+..++-++|+| .-+..+.. .... .-.+......|..||+||++.
T Consensus 353 ~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~ 417 (525)
T 1tf7_A 353 SAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSD 417 (525)
T ss_dssp GSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECS
T ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcc
Confidence 11333333 34556667788999999 54433332 1100 001111234578899999875
No 392
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.59 E-value=0.021 Score=54.57 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhh
Q 045686 172 NEKVIGLYGMGGVGKTTLLKKLNNK 196 (885)
Q Consensus 172 ~~~vi~I~G~gG~GKTtLa~~v~~~ 196 (885)
....|+|+|++|+||||+++.+...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999999876
No 393
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.55 E-value=0.021 Score=54.77 Aligned_cols=27 Identities=26% Similarity=0.448 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
..+++++|+|+.|+|||||++.+....
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 357899999999999999999998765
No 394
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.52 E-value=0.018 Score=54.82 Aligned_cols=26 Identities=50% Similarity=0.402 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 045686 172 NEKVIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 172 ~~~vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
..++|.|+|++|+||||+++.++...
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 34678999999999999999998776
No 395
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=94.48 E-value=0.065 Score=63.20 Aligned_cols=26 Identities=15% Similarity=0.199 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNK 196 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~ 196 (885)
+.+.+++|+|+.|.||||+.+.++.-
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCChHHHHHHHHHH
Confidence 45789999999999999999998754
No 396
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.45 E-value=0.029 Score=55.34 Aligned_cols=42 Identities=14% Similarity=0.293 Sum_probs=32.8
Q ss_pred chhHHHHHHHHHhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 045686 156 GLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 156 gr~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
+.++..+.+...+......+|+|+|.+|+|||||+..+....
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 13 ENKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred hcHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 344555556665555678899999999999999999998875
No 397
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.44 E-value=0.021 Score=56.62 Aligned_cols=25 Identities=36% Similarity=0.514 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 045686 173 EKVIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 173 ~~vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
..+|+|+|++|+||||+++.+....
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998765
No 398
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.44 E-value=0.021 Score=54.90 Aligned_cols=25 Identities=36% Similarity=0.537 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhc
Q 045686 174 KVIGLYGMGGVGKTTLLKKLNNKFR 198 (885)
Q Consensus 174 ~vi~I~G~gG~GKTtLa~~v~~~~~ 198 (885)
.+|.|.|++|+||||+|+.+.....
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999998774
No 399
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.44 E-value=0.21 Score=54.49 Aligned_cols=92 Identities=24% Similarity=0.221 Sum_probs=49.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcC-cccHHHHHHHHHHHcCCCccc-cCCCChhHHHHHHH
Q 045686 172 NEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSR-DANLEKIQESILRRFEIPDQM-WIGKDEDGRANEIL 249 (885)
Q Consensus 172 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~~l~ 249 (885)
..++|.++|.+|+||||++..++...... ... .+..+.+.. .......+.......+++.-. ....+.........
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~-~G~-kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l 176 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREK-HKK-KVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAAL 176 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHT-SCC-CEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHh-cCC-eEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHH
Confidence 46899999999999999999998877532 122 344454432 222223333334444443211 01223444433333
Q ss_pred HHhc-CCCeEEEEecCC
Q 045686 250 SNLR-GKKFVLLLDDVW 265 (885)
Q Consensus 250 ~~l~-~k~~LlVLDdv~ 265 (885)
..++ ..--++|+|-.-
T Consensus 177 ~~~~~~~~D~VIIDTpG 193 (433)
T 2xxa_A 177 KEAKLKFYDVLLVDTAG 193 (433)
T ss_dssp HHHHHTTCSEEEEECCC
T ss_pred HHHHhCCCCEEEEECCC
Confidence 4444 333477778763
No 400
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.42 E-value=0.022 Score=54.47 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 045686 172 NEKVIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 172 ~~~vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
.+.+|+|.|++|+||||+|+.+....
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999998765
No 401
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.40 E-value=0.092 Score=61.54 Aligned_cols=173 Identities=15% Similarity=0.245 Sum_probs=77.9
Q ss_pred CCccchhHHHHHHHHHhhc-------------CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccH
Q 045686 152 GKTVGLDSIISEVWRCIED-------------HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANL 218 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~-------------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 218 (885)
.++.|.++.+++|.+.+.- ...+-|.++|++|.|||.+|+.+++... .. ++.++ .
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~---~~-----f~~v~----~ 544 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ---AN-----FISIK----G 544 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTT---CE-----EEECC----H
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhC---Cc-----eEEec----c
Confidence 3556888888888776521 2234578999999999999999999873 22 22222 1
Q ss_pred HHHHHHHHHHcCCCccccCCCChhHHHHHHHHHhcCCCeEEEEecCCCcc--------ccc----ccccccc--ccccCC
Q 045686 219 EKIQESILRRFEIPDQMWIGKDEDGRANEILSNLRGKKFVLLLDDVWERL--------DLS----KVGVSDL--LDDSSQ 284 (885)
Q Consensus 219 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~--------~~~----~~~~~~~--l~~~~~ 284 (885)
..++ .. +.+.+...........-+..+.+|++|+++... +.. .+...+. +.....
T Consensus 545 ~~l~----s~-------~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~ 613 (806)
T 3cf2_A 545 PELL----TM-------WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST 613 (806)
T ss_dssp HHHH----TT-------TCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCS
T ss_pred chhh----cc-------ccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCC
Confidence 2221 11 123333333333333435578999999986421 000 0000000 000111
Q ss_pred CCCEEEE-EcCChhH-----HhhhcccceeeccCCChHHHHHHHHHHhcCcccCCccchHHHHHHHHHHhCCc
Q 045686 285 TGSKIVF-TTRSEEV-----CGEMGARRRFRVECLSPEAALDLFRYKVGEDVYSSHFEISNLAQTVVEECRGL 351 (885)
Q Consensus 285 ~gs~Iiv-TTR~~~v-----~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~I~~~c~Gl 351 (885)
...-+|| ||...+. ...-.-...+.+..-+.++-.++|+.+........+.++ ..+++.+.|.
T Consensus 614 ~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl----~~la~~t~g~ 682 (806)
T 3cf2_A 614 KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDL----EFLAKMTNGF 682 (806)
T ss_dssp SSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC-----------------
T ss_pred CCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCH----HHHHHhCCCC
Confidence 1222333 4433222 221123456778777777777888776644332223333 4556666654
No 402
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.38 E-value=0.024 Score=54.70 Aligned_cols=26 Identities=31% Similarity=0.428 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 045686 172 NEKVIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 172 ~~~vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
...+|+|.|++|+||||+|+.++...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999998765
No 403
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.36 E-value=0.023 Score=57.16 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 045686 172 NEKVIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 172 ~~~vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
...+|+|+|++|+||||+++.++...
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999999665
No 404
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.36 E-value=0.027 Score=55.04 Aligned_cols=27 Identities=44% Similarity=0.488 Sum_probs=24.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
...++|.|.|++|+||||.|+.++..+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 456899999999999999999998876
No 405
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.35 E-value=0.023 Score=57.44 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 045686 174 KVIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 174 ~vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
.+|.|+|++|+||||||+.++...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 478999999999999999998876
No 406
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.35 E-value=0.024 Score=54.52 Aligned_cols=25 Identities=28% Similarity=0.386 Sum_probs=22.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 045686 173 EKVIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 173 ~~vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
..+|+|.|++|+||||+|+.+....
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998765
No 407
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.35 E-value=0.027 Score=58.42 Aligned_cols=28 Identities=36% Similarity=0.650 Sum_probs=25.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhcc
Q 045686 172 NEKVIGLYGMGGVGKTTLLKKLNNKFRD 199 (885)
Q Consensus 172 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~ 199 (885)
++.+++|+|++|+||||+++.++.....
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~ 128 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN 128 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 5689999999999999999999987753
No 408
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.34 E-value=0.025 Score=57.15 Aligned_cols=27 Identities=37% Similarity=0.441 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
....+|+|+|+.|+||||+++.++...
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 456799999999999999999998765
No 409
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.34 E-value=0.019 Score=54.27 Aligned_cols=24 Identities=38% Similarity=0.545 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 045686 174 KVIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 174 ~vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
+.|.|+|++|+||||+|+.++...
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 368999999999999999998876
No 410
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.33 E-value=0.023 Score=53.21 Aligned_cols=26 Identities=27% Similarity=0.425 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 045686 172 NEKVIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 172 ~~~vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
...+|+|.|+.|+||||+|+.+....
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999998876
No 411
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.32 E-value=0.15 Score=55.50 Aligned_cols=94 Identities=18% Similarity=0.318 Sum_probs=53.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcc-cHHHHHHHHHHHcCCCcc----ccCCCChhHHH
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDA-NLEKIQESILRRFEIPDQ----MWIGKDEDGRA 245 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~i~~~l~~~~~----~~~~~~~~~~~ 245 (885)
.++..++|+|.+|+|||||++.+...... ..-+..+++-+.+.. ...++..++...-.+... .........+.
T Consensus 149 ~kGq~~~i~G~sGvGKTtL~~~l~~~~~~--~~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~ 226 (473)
T 1sky_E 149 IKGGKIGLFGGAGVGKTVLIQELIHNIAQ--EHGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARM 226 (473)
T ss_dssp ETTCEEEEECCSSSCHHHHHHHHHHHHHH--HTCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHH
T ss_pred ccCCEEEEECCCCCCccHHHHHHHhhhhh--ccCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHH
Confidence 34567899999999999999999887642 122345666666554 344555555432111000 00111111111
Q ss_pred ------HHHHHHh---cCCCeEEEEecCCC
Q 045686 246 ------NEILSNL---RGKKFVLLLDDVWE 266 (885)
Q Consensus 246 ------~~l~~~l---~~k~~LlVLDdv~~ 266 (885)
-.+.+++ +++.+|+++||+..
T Consensus 227 ~~~~~~ltiAEyFrd~~G~~VLl~~D~itR 256 (473)
T 1sky_E 227 RVALTGLTMAEYFRDEQGQDGLLFIDNIFR 256 (473)
T ss_dssp HHHHHHHHHHHHHHHHSCCEEEEEEECTHH
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 1234443 47899999999843
No 412
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.32 E-value=0.049 Score=54.61 Aligned_cols=42 Identities=19% Similarity=0.195 Sum_probs=30.1
Q ss_pred chhHHHHHHHHHhh--cCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 045686 156 GLDSIISEVWRCIE--DHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 156 gr~~~~~~l~~~L~--~~~~~vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
+....+.++.+... .....+|+|.|++|+||||+|+.+....
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 10 STIDLLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CHHHHHHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 33444444444332 2466789999999999999999998765
No 413
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.25 E-value=0.023 Score=55.32 Aligned_cols=22 Identities=41% Similarity=0.578 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 045686 174 KVIGLYGMGGVGKTTLLKKLNN 195 (885)
Q Consensus 174 ~vi~I~G~gG~GKTtLa~~v~~ 195 (885)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999987
No 414
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.23 E-value=0.037 Score=59.39 Aligned_cols=44 Identities=23% Similarity=0.242 Sum_probs=36.2
Q ss_pred ccchhHHHHHHHHHhh-------------c--CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 045686 154 TVGLDSIISEVWRCIE-------------D--HNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 154 ~vgr~~~~~~l~~~L~-------------~--~~~~vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
++|.+..++.+...+. . .....+.++|++|+|||++|+.+++..
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 6899998888888772 1 134678999999999999999999876
No 415
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.22 E-value=0.025 Score=55.12 Aligned_cols=22 Identities=36% Similarity=0.558 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 045686 174 KVIGLYGMGGVGKTTLLKKLNN 195 (885)
Q Consensus 174 ~vi~I~G~gG~GKTtLa~~v~~ 195 (885)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 416
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.18 E-value=0.02 Score=54.59 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 045686 174 KVIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 174 ~vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
++|.|+|++|+||||+|+.+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999998875
No 417
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.18 E-value=0.029 Score=54.40 Aligned_cols=26 Identities=31% Similarity=0.423 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNK 196 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~ 196 (885)
.+..+|+|+|+.|+||||+++.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 45679999999999999999999774
No 418
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.16 E-value=0.029 Score=54.85 Aligned_cols=26 Identities=23% Similarity=0.396 Sum_probs=23.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhhc
Q 045686 173 EKVIGLYGMGGVGKTTLLKKLNNKFR 198 (885)
Q Consensus 173 ~~vi~I~G~gG~GKTtLa~~v~~~~~ 198 (885)
..+|.|.|++|+||||+|+.+.....
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 46899999999999999999998773
No 419
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.16 E-value=0.026 Score=54.85 Aligned_cols=23 Identities=30% Similarity=0.654 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 045686 175 VIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 175 vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
+|+|.|+.|+||||+++.++...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999998876
No 420
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.14 E-value=0.03 Score=54.35 Aligned_cols=26 Identities=35% Similarity=0.409 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 045686 172 NEKVIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 172 ~~~vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
...+|+|.|+.|+||||+|+.++...
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999998765
No 421
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.13 E-value=0.044 Score=56.44 Aligned_cols=26 Identities=27% Similarity=0.280 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 045686 172 NEKVIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 172 ~~~vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
...+|.|.|++|+||||+|+.+....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998765
No 422
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.11 E-value=0.032 Score=57.85 Aligned_cols=29 Identities=38% Similarity=0.590 Sum_probs=25.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhcc
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRD 199 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~ 199 (885)
..+.+++|+|++|+||||+++.++.....
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~ 126 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRLKN 126 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 35689999999999999999999987653
No 423
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.10 E-value=0.023 Score=54.02 Aligned_cols=24 Identities=46% Similarity=0.678 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 045686 174 KVIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 174 ~vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
+.|.|.|++|+|||||++.+....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 457899999999999999998765
No 424
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=94.09 E-value=0.019 Score=61.29 Aligned_cols=46 Identities=20% Similarity=0.268 Sum_probs=34.4
Q ss_pred CCccchhHHHHHHHHHhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 045686 152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
..++|.+..++.+..........-+.|+|++|+|||++|+.+++..
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred hhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhC
Confidence 4588998876665444433233348899999999999999999865
No 425
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.06 E-value=0.29 Score=54.21 Aligned_cols=92 Identities=18% Similarity=0.175 Sum_probs=47.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcC-cccHHHHHHHHHHHcCCCccc-cCCCChhHHHHHHH
Q 045686 172 NEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSR-DANLEKIQESILRRFEIPDQM-WIGKDEDGRANEIL 249 (885)
Q Consensus 172 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~~l~ 249 (885)
...+|+|+|.+|+||||++..++...... .. .+..|+... .....+.+.......+++... ....+..+......
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~--G~-kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al 176 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRK--GW-KTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGV 176 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHT--TC-CEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC--CC-eEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHH
Confidence 45799999999999999999998776422 12 244444422 122222333333444443211 01223333332222
Q ss_pred HHhc-CCCeEEEEecCCC
Q 045686 250 SNLR-GKKFVLLLDDVWE 266 (885)
Q Consensus 250 ~~l~-~k~~LlVLDdv~~ 266 (885)
..+. ...-++|+|-+-.
T Consensus 177 ~~~~~~~~DvvIIDTpG~ 194 (504)
T 2j37_W 177 EKFKNENFEIIIVDTSGR 194 (504)
T ss_dssp HHHHHTTCCEEEEEECCC
T ss_pred HHHHHCCCcEEEEeCCCC
Confidence 2232 4445777787643
No 426
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.03 E-value=0.028 Score=54.26 Aligned_cols=25 Identities=40% Similarity=0.465 Sum_probs=22.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 045686 173 EKVIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 173 ~~vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
..+|+|.|++|+||||+|+.+....
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4789999999999999999998876
No 427
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.01 E-value=0.025 Score=54.09 Aligned_cols=25 Identities=40% Similarity=0.565 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhc
Q 045686 174 KVIGLYGMGGVGKTTLLKKLNNKFR 198 (885)
Q Consensus 174 ~vi~I~G~gG~GKTtLa~~v~~~~~ 198 (885)
.+++|+|+.|+|||||++.++....
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 5789999999999999999988764
No 428
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.00 E-value=0.044 Score=60.94 Aligned_cols=43 Identities=16% Similarity=0.162 Sum_probs=36.8
Q ss_pred CccchhHHHHHHHHHhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 045686 153 KTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 153 ~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
.++|++..++.+...+..+ .-|.++|++|+|||+||+.+++..
T Consensus 23 ~ivGq~~~i~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhHHHHHHHHHHHHHHhcC--CeeEeecCchHHHHHHHHHHHHHH
Confidence 4889999998888777543 467899999999999999999876
No 429
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=94.00 E-value=0.048 Score=58.80 Aligned_cols=45 Identities=20% Similarity=0.251 Sum_probs=35.2
Q ss_pred CccchhHHHHHHHHHhh------------------------------cCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 045686 153 KTVGLDSIISEVWRCIE------------------------------DHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 153 ~~vgr~~~~~~l~~~L~------------------------------~~~~~vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
.++|.+..++.|...+. ......+.++|++|+|||++|+.+++..
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHh
Confidence 46788888888776661 0124568899999999999999999876
No 430
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.99 E-value=0.021 Score=55.65 Aligned_cols=33 Identities=18% Similarity=0.148 Sum_probs=26.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCc
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDF 204 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f 204 (885)
..+.+++|+|+.|+|||||++.++.. .+..+..
T Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I 52 (208)
T 3b85_A 20 DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQV 52 (208)
T ss_dssp HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCee
Confidence 35689999999999999999999887 5433444
No 431
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.99 E-value=0.021 Score=54.42 Aligned_cols=25 Identities=32% Similarity=0.456 Sum_probs=18.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 045686 173 EKVIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 173 ~~vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
..+|.|.|++|+||||+|+.+....
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998765
No 432
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.97 E-value=0.033 Score=53.98 Aligned_cols=26 Identities=35% Similarity=0.381 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 045686 172 NEKVIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 172 ~~~vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
...+|.|+|++|+||||+|+.+....
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 44689999999999999999998866
No 433
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.95 E-value=0.033 Score=56.58 Aligned_cols=26 Identities=38% Similarity=0.531 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 045686 172 NEKVIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 172 ~~~vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
...+|.|.|++|+||||+|+.+....
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 35789999999999999999998874
No 434
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.91 E-value=0.051 Score=56.51 Aligned_cols=27 Identities=30% Similarity=0.383 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 045686 172 NEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (885)
Q Consensus 172 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 198 (885)
...+|+|.|++|+||||+++.+.....
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 456999999999999999999987663
No 435
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.91 E-value=0.026 Score=53.11 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 045686 174 KVIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 174 ~vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
.+|.|.|++|+||||+|+.+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998875
No 436
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.89 E-value=0.022 Score=56.77 Aligned_cols=27 Identities=30% Similarity=0.300 Sum_probs=18.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHH-hhh
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLN-NKF 197 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~-~~~ 197 (885)
..+.+++|+|+.|+|||||++.+. ...
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp ECCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 356899999999999999999998 654
No 437
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=93.89 E-value=0.036 Score=52.54 Aligned_cols=27 Identities=30% Similarity=0.381 Sum_probs=24.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 045686 172 NEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (885)
Q Consensus 172 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 198 (885)
++.+|+|+|+.|+||||+++.+.....
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 467899999999999999999988763
No 438
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.86 E-value=0.055 Score=56.41 Aligned_cols=27 Identities=26% Similarity=0.319 Sum_probs=24.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
..+.+|+|+|+.|+|||||++.+....
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 466899999999999999999998865
No 439
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.83 E-value=0.034 Score=53.28 Aligned_cols=27 Identities=44% Similarity=0.710 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
....+|+|+|+.|+||||+++.+....
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhc
Confidence 345799999999999999999998763
No 440
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.82 E-value=0.033 Score=54.42 Aligned_cols=27 Identities=30% Similarity=0.338 Sum_probs=23.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 045686 172 NEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (885)
Q Consensus 172 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 198 (885)
...+|+|.|+.|+||||+++.+.....
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 457899999999999999999998763
No 441
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.74 E-value=0.037 Score=54.55 Aligned_cols=26 Identities=31% Similarity=0.420 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 045686 172 NEKVIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 172 ~~~vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
....|.|.|++|+||||+|+.++...
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 35689999999999999999998876
No 442
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.74 E-value=0.036 Score=54.26 Aligned_cols=27 Identities=30% Similarity=0.352 Sum_probs=24.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 045686 172 NEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (885)
Q Consensus 172 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 198 (885)
...+|+|.|+.|+||||+|+.+.....
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 457899999999999999999998764
No 443
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=93.71 E-value=0.12 Score=53.90 Aligned_cols=28 Identities=36% Similarity=0.553 Sum_probs=24.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 198 (885)
.+..+++|+|++|+||||++..++....
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~ 130 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYA 130 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3568999999999999999999988775
No 444
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.71 E-value=0.16 Score=53.24 Aligned_cols=53 Identities=15% Similarity=0.139 Sum_probs=38.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHHH
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILRR 228 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~ 228 (885)
..+.++.|.|.+|+||||+|..++..... .-..++|++. ..+...+...++..
T Consensus 44 ~~G~LiiIaG~pG~GKTt~al~ia~~~a~---~g~~Vl~fSl--Ems~~ql~~Rlls~ 96 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKTSLMMNMVLSALN---DDRGVAVFSL--EMSAEQLALRALSD 96 (338)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHH---TTCEEEEEES--SSCHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHH---cCCeEEEEeC--CCCHHHHHHHHHHH
Confidence 56789999999999999999999887642 1234666554 44566666666544
No 445
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.71 E-value=0.036 Score=51.81 Aligned_cols=23 Identities=30% Similarity=0.284 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 045686 175 VIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 175 vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
.|+|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998865
No 446
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.71 E-value=0.036 Score=53.15 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 045686 173 EKVIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 173 ~~vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
..+|+|.|++|+||||+|+.+....
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998765
No 447
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.68 E-value=0.039 Score=53.57 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 045686 172 NEKVIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 172 ~~~vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
.+.+|+|.|+.|+||||+++.+....
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 35789999999999999999998765
No 448
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.66 E-value=0.047 Score=55.15 Aligned_cols=27 Identities=33% Similarity=0.433 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
....+|.|+|++|+||||+|+.+....
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 345789999999999999999998776
No 449
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=93.63 E-value=0.22 Score=54.25 Aligned_cols=94 Identities=19% Similarity=0.273 Sum_probs=60.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcc-cHHHHHHHHHHHcCCC-------ccc----cCC
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDA-NLEKIQESILRRFEIP-------DQM----WIG 238 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~i~~~l~~~-------~~~----~~~ 238 (885)
.++.-++|+|..|+|||+|++++.+... +.+-+.++++-+.+.. ...++.+++.+.=.+. ... ..+
T Consensus 163 gkGqr~gIfgg~GvGKT~L~~~l~~~~a--~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtvvV~~t~d 240 (498)
T 1fx0_B 163 RRGGKIGLFGGAGVGKTVLIMELINNIA--KAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMN 240 (498)
T ss_dssp CTTCCEEEEECSSSSHHHHHHHHHHHTT--TTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEEEEEECTT
T ss_pred ccCCeEEeecCCCCCchHHHHHHHHHHH--hhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceEEEEeCCC
Confidence 5678899999999999999999988753 2345677888888755 4667777776542222 100 011
Q ss_pred CChh------HHHHHHHHHhc---CCCeEEEEecCCC
Q 045686 239 KDED------GRANEILSNLR---GKKFVLLLDDVWE 266 (885)
Q Consensus 239 ~~~~------~~~~~l~~~l~---~k~~LlVLDdv~~ 266 (885)
.... ...-.+.++++ ++.+|+++||+..
T Consensus 241 ~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~DsitR 277 (498)
T 1fx0_B 241 EPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFR 277 (498)
T ss_dssp SCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 1111 11223455555 4789999999853
No 450
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=93.62 E-value=0.19 Score=59.54 Aligned_cols=68 Identities=12% Similarity=0.213 Sum_probs=43.0
Q ss_pred hHHHHHHHHHhcCC---CeEEEEecCCCccccccccccc-cccccCCCCCEEEEEcCChhHHhhhcccceeecc
Q 045686 242 DGRANEILSNLRGK---KFVLLLDDVWERLDLSKVGVSD-LLDDSSQTGSKIVFTTRSEEVCGEMGARRRFRVE 311 (885)
Q Consensus 242 ~~~~~~l~~~l~~k---~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~gs~IivTTR~~~v~~~~~~~~~~~l~ 311 (885)
+...-.+...|..+ +-++|||+.....|........ .+......|..||++|++.+++. . .++++.|.
T Consensus 850 ekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~-~-aDrIivL~ 921 (972)
T 2r6f_A 850 EAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIK-T-ADYIIDLG 921 (972)
T ss_dssp HHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHT-T-CSEEEEEC
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHH-h-CCEEEEEc
Confidence 44444566777654 5899999999887765432211 11112235789999999988764 2 55666663
No 451
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.61 E-value=0.042 Score=51.15 Aligned_cols=27 Identities=30% Similarity=0.259 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 045686 172 NEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (885)
Q Consensus 172 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 198 (885)
..++++|+|+.|+|||||+..+.....
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhH
Confidence 357899999999999999999988764
No 452
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.60 E-value=0.037 Score=53.17 Aligned_cols=23 Identities=43% Similarity=0.612 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 045686 175 VIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 175 vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
+|+|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998876
No 453
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=93.59 E-value=0.1 Score=50.26 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 045686 174 KVIGLYGMGGVGKTTLLKKLNNK 196 (885)
Q Consensus 174 ~vi~I~G~gG~GKTtLa~~v~~~ 196 (885)
.++.|+|.+|+|||++|......
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 47789999999999999775433
No 454
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.58 E-value=0.042 Score=55.46 Aligned_cols=27 Identities=22% Similarity=0.330 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
....+|+|.|++|+||||+|+.+....
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 355789999999999999999998764
No 455
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=93.56 E-value=0.066 Score=52.31 Aligned_cols=29 Identities=28% Similarity=0.414 Sum_probs=25.3
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 045686 170 DHNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (885)
Q Consensus 170 ~~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 198 (885)
...+.+|.|.|+.|+||||+++.+.....
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 35678999999999999999999988763
No 456
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.54 E-value=0.046 Score=57.87 Aligned_cols=28 Identities=39% Similarity=0.604 Sum_probs=24.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhcc
Q 045686 172 NEKVIGLYGMGGVGKTTLLKKLNNKFRD 199 (885)
Q Consensus 172 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~ 199 (885)
.+.+++|+|++|+||||+++.++.....
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~ 183 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKN 183 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccc
Confidence 5689999999999999999999987653
No 457
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.53 E-value=0.038 Score=54.77 Aligned_cols=26 Identities=23% Similarity=0.346 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 045686 172 NEKVIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 172 ~~~vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
....|.|.|++|+||||+|+.++...
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34689999999999999999998765
No 458
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.46 E-value=0.042 Score=56.69 Aligned_cols=27 Identities=19% Similarity=0.304 Sum_probs=24.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
+++.+++|+|++|+|||||++.+..-.
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 678999999999999999999998765
No 459
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=93.43 E-value=0.061 Score=58.43 Aligned_cols=46 Identities=24% Similarity=0.296 Sum_probs=36.3
Q ss_pred CCccchhHHHHHHHHHhhc--------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 045686 152 GKTVGLDSIISEVWRCIED--------------HNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~--------------~~~~vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
..++|.++.++.+...+.. ...+-|.++|++|+||||+|+.++...
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHc
Confidence 3578988888888766621 134568899999999999999999876
No 460
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=93.43 E-value=0.036 Score=55.58 Aligned_cols=25 Identities=36% Similarity=0.448 Sum_probs=23.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 045686 173 EKVIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 173 ~~vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
..+|+|+|+.|+||||+++.++...
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 6789999999999999999998866
No 461
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=93.39 E-value=0.042 Score=53.95 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 045686 175 VIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 175 vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
.|+|.|++|+||||+|+.++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998766
No 462
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=93.36 E-value=0.073 Score=50.81 Aligned_cols=39 Identities=8% Similarity=0.162 Sum_probs=29.4
Q ss_pred HHHHHHHHHhhc-CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 045686 159 SIISEVWRCIED-HNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 159 ~~~~~l~~~L~~-~~~~vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
.-+..+..++.. +....+.|+|++|+||||+|..+++..
T Consensus 43 ~f~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 43 TFLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp HHHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 335556666654 233579999999999999999998876
No 463
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=93.36 E-value=0.12 Score=61.65 Aligned_cols=68 Identities=12% Similarity=0.231 Sum_probs=43.1
Q ss_pred hHHHHHHHHHhcCC---CeEEEEecCCCccccccccccc-cccccCCCCCEEEEEcCChhHHhhhcccceeecc
Q 045686 242 DGRANEILSNLRGK---KFVLLLDDVWERLDLSKVGVSD-LLDDSSQTGSKIVFTTRSEEVCGEMGARRRFRVE 311 (885)
Q Consensus 242 ~~~~~~l~~~l~~k---~~LlVLDdv~~~~~~~~~~~~~-~l~~~~~~gs~IivTTR~~~v~~~~~~~~~~~l~ 311 (885)
+...-.+...|..+ +-++|||+.....|........ .+......|..|||+|++.++.. . .++++.|.
T Consensus 868 ekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~-~-aDrIivL~ 939 (993)
T 2ygr_A 868 EAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVIK-T-SDWIIDLG 939 (993)
T ss_dssp HHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHT-T-CSEEEEEE
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHH-h-CCEEEEEC
Confidence 44444566777654 5899999999887765432211 11112235789999999988764 2 55666663
No 464
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.32 E-value=0.15 Score=65.28 Aligned_cols=87 Identities=15% Similarity=0.144 Sum_probs=57.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHHHcCCCccc---cCCCChhHHHHH
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILRRFEIPDQM---WIGKDEDGRANE 247 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~ 247 (885)
.+.++|.|+|++|+|||+||.++..... ..-..++|+++.+.++... ++.+|..... ......++....
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~ea~---~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~ 1496 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIAAAQ---REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEI 1496 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHH---TTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHH
Confidence 4678999999999999999999988763 2223477888777665544 5566643221 112233444444
Q ss_pred HHHHhc-CCCeEEEEecCC
Q 045686 248 ILSNLR-GKKFVLLLDDVW 265 (885)
Q Consensus 248 l~~~l~-~k~~LlVLDdv~ 265 (885)
+.+..+ .+.-+||+|++.
T Consensus 1497 ~~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1497 CDALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHHHTCCSEEEESCGG
T ss_pred HHHHHhcCCCCEEEEcChh
Confidence 444433 567899999985
No 465
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.32 E-value=0.04 Score=54.39 Aligned_cols=26 Identities=19% Similarity=0.281 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 045686 172 NEKVIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 172 ~~~vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
....|.|.|++|+||||+|+.++...
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34678999999999999999998876
No 466
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.25 E-value=0.054 Score=53.24 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHh
Q 045686 173 EKVIGLYGMGGVGKTTLLKKLNN 195 (885)
Q Consensus 173 ~~vi~I~G~gG~GKTtLa~~v~~ 195 (885)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999975
No 467
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.22 E-value=0.045 Score=53.68 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 045686 175 VIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 175 vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
.|+|.|++|+||||+|+.++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998765
No 468
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.18 E-value=0.048 Score=52.53 Aligned_cols=24 Identities=29% Similarity=0.504 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhc
Q 045686 175 VIGLYGMGGVGKTTLLKKLNNKFR 198 (885)
Q Consensus 175 vi~I~G~gG~GKTtLa~~v~~~~~ 198 (885)
+|+|.|+.|+||||+++.+.....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999988763
No 469
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=92.98 E-value=0.056 Score=55.47 Aligned_cols=23 Identities=35% Similarity=0.694 Sum_probs=21.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHH
Q 045686 172 NEKVIGLYGMGGVGKTTLLKKLN 194 (885)
Q Consensus 172 ~~~vi~I~G~gG~GKTtLa~~v~ 194 (885)
...+|+|+|+.|+||||+|+.+.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999998
No 470
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=92.96 E-value=0.057 Score=53.29 Aligned_cols=25 Identities=24% Similarity=0.469 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 045686 173 EKVIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 173 ~~vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
..+|+|.|++|+||||+|+.+....
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998776
No 471
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=92.92 E-value=0.056 Score=52.44 Aligned_cols=23 Identities=30% Similarity=0.444 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 045686 175 VIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 175 vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
+|.|.|++|+||+|.|+.++..+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 67899999999999999998876
No 472
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.87 E-value=0.033 Score=52.23 Aligned_cols=26 Identities=27% Similarity=0.549 Sum_probs=23.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhcc
Q 045686 174 KVIGLYGMGGVGKTTLLKKLNNKFRD 199 (885)
Q Consensus 174 ~vi~I~G~gG~GKTtLa~~v~~~~~~ 199 (885)
++++|+|..|+|||||++.+......
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 68999999999999999999887753
No 473
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=92.84 E-value=0.046 Score=57.38 Aligned_cols=52 Identities=17% Similarity=0.134 Sum_probs=35.4
Q ss_pred HHHHHhhc-CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCc
Q 045686 163 EVWRCIED-HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRD 215 (885)
Q Consensus 163 ~l~~~L~~-~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~ 215 (885)
++++.+.. .++.-++|+|.+|+|||+|++++++........+.+ +++-+.+.
T Consensus 164 raID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~-V~~lIGER 216 (427)
T 3l0o_A 164 RLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTIR-IILLIDER 216 (427)
T ss_dssp HHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSEE-EEEECSCC
T ss_pred hhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeEE-EEEEeccC
Confidence 45555543 567889999999999999999998875321123333 45666554
No 474
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=92.82 E-value=0.06 Score=56.03 Aligned_cols=40 Identities=30% Similarity=0.496 Sum_probs=29.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEc
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVS 213 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~ 213 (885)
+..+||+|.|-|||||||.+..++.-.... + ..+.-+.+.
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~-G--kkVllID~D 85 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSIL-G--KRVLQIGCD 85 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHT-T--CCEEEEEES
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHC-C--CeEEEEecC
Confidence 567999999999999999998887776432 2 125555554
No 475
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=92.75 E-value=0.047 Score=59.52 Aligned_cols=26 Identities=42% Similarity=0.534 Sum_probs=23.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhhc
Q 045686 173 EKVIGLYGMGGVGKTTLLKKLNNKFR 198 (885)
Q Consensus 173 ~~vi~I~G~gG~GKTtLa~~v~~~~~ 198 (885)
..+|+|+|.+|+||||++..++....
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999988764
No 476
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.73 E-value=0.031 Score=54.79 Aligned_cols=25 Identities=44% Similarity=0.785 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhc
Q 045686 174 KVIGLYGMGGVGKTTLLKKLNNKFR 198 (885)
Q Consensus 174 ~vi~I~G~gG~GKTtLa~~v~~~~~ 198 (885)
.+|+|.|+.|+||||+++.+.....
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3789999999999999999988763
No 477
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=92.66 E-value=0.062 Score=52.24 Aligned_cols=24 Identities=13% Similarity=0.414 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 045686 174 KVIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 174 ~vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
++|+|.|+.|+||||+|+.+....
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 389999999999999999998865
No 478
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=92.63 E-value=0.12 Score=51.06 Aligned_cols=27 Identities=26% Similarity=0.428 Sum_probs=24.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 045686 172 NEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (885)
Q Consensus 172 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 198 (885)
.+.+|+|.|++|+||||+++.+.....
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 568999999999999999999999874
No 479
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=92.60 E-value=0.054 Score=53.76 Aligned_cols=26 Identities=27% Similarity=0.293 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNK 196 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~ 196 (885)
.++.+|+|.|+.|+||||+++.+...
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 45789999999999999999998775
No 480
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=92.56 E-value=0.062 Score=52.78 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=22.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 045686 173 EKVIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 173 ~~vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
...|.|.|++|+||||+|+.++...
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999998876
No 481
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=92.50 E-value=0.076 Score=52.79 Aligned_cols=26 Identities=35% Similarity=0.370 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 045686 172 NEKVIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 172 ~~~vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
....|.|.|++|+||||+|+.++...
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34679999999999999999998876
No 482
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.41 E-value=0.072 Score=55.59 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 045686 174 KVIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 174 ~vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
.+|+|.|+.|+||||||+.++...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 589999999999999999998876
No 483
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=92.37 E-value=0.42 Score=52.58 Aligned_cols=58 Identities=9% Similarity=-0.043 Sum_probs=39.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHH-HcCCC
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILR-RFEIP 232 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~-~l~~~ 232 (885)
..+.++.|.|.+|+||||+|..++...... .-..++|++.. .+...+...++. ..+..
T Consensus 198 ~~G~l~ii~G~pg~GKT~lal~ia~~~a~~--~g~~vl~~slE--~~~~~l~~R~~~~~~~i~ 256 (444)
T 2q6t_A 198 GPGSLNIIAARPAMGKTAFALTIAQNAALK--EGVGVGIYSLE--MPAAQLTLRMMCSEARID 256 (444)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHT--TCCCEEEEESS--SCHHHHHHHHHHHHTTCC
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHh--CCCeEEEEECC--CCHHHHHHHHHHHHcCCC
Confidence 467899999999999999999998876421 12346776554 445566666554 33443
No 484
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.36 E-value=0.084 Score=49.56 Aligned_cols=27 Identities=37% Similarity=0.431 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 045686 172 NEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (885)
Q Consensus 172 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 198 (885)
..++++|+|+.|+|||||+..+.....
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 357899999999999999999988753
No 485
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=92.34 E-value=0.073 Score=52.51 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 045686 175 VIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 175 vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
.|.|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998765
No 486
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=92.20 E-value=0.073 Score=52.08 Aligned_cols=23 Identities=30% Similarity=0.277 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 045686 175 VIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 175 vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
.|.|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998866
No 487
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=92.19 E-value=0.16 Score=50.30 Aligned_cols=37 Identities=24% Similarity=0.446 Sum_probs=28.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEE
Q 045686 172 NEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWV 210 (885)
Q Consensus 172 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv 210 (885)
.+.+|.|.|+.|+||||+++.+...... ..+..+...
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~--~~~~~~~~~ 62 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQ--NGIDHITRT 62 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHH--TTCCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh--cCCCeeeee
Confidence 4579999999999999999999988753 345533333
No 488
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=92.17 E-value=0.09 Score=54.66 Aligned_cols=26 Identities=38% Similarity=0.597 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 045686 172 NEKVIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 172 ~~~vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
..++|.|+|+.|+||||||..++...
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 45799999999999999999998776
No 489
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=92.14 E-value=0.092 Score=53.82 Aligned_cols=25 Identities=32% Similarity=0.481 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 045686 173 EKVIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 173 ~~vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
.++|.|.|+.|+||||||..++...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4689999999999999999998765
No 490
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=92.13 E-value=0.11 Score=56.06 Aligned_cols=27 Identities=19% Similarity=0.286 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
....+++|+|++|+|||||.+.+....
T Consensus 67 ~~~~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 67 SSVLNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp HCCEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCC
Confidence 456799999999999999999999854
No 491
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=92.12 E-value=0.089 Score=52.41 Aligned_cols=27 Identities=26% Similarity=0.380 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
....+|+|+|+.|+||||+++.+....
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456799999999999999999998765
No 492
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=92.10 E-value=0.11 Score=59.89 Aligned_cols=45 Identities=16% Similarity=0.301 Sum_probs=38.0
Q ss_pred CCccchhHHHHHHHHHhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 045686 152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (885)
Q Consensus 152 ~~~vgr~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 198 (885)
..++|.+..++.+...+..+ ..+.|+|++|+||||||+.++....
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred ceEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccCC
Confidence 45789998888887777654 6889999999999999999998763
No 493
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.07 E-value=0.16 Score=54.11 Aligned_cols=38 Identities=24% Similarity=0.397 Sum_probs=29.0
Q ss_pred HHHHHHHhh--cCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 045686 161 ISEVWRCIE--DHNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (885)
Q Consensus 161 ~~~l~~~L~--~~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 198 (885)
..++.+.+. .....+|+|+|.+|+|||||+..+.....
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 344444443 35678999999999999999999987763
No 494
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.07 E-value=0.28 Score=62.88 Aligned_cols=88 Identities=14% Similarity=0.126 Sum_probs=60.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHHHcCCCccc---cCCCChhHHHHH
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILRRFEIPDQM---WIGKDEDGRANE 247 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~ 247 (885)
...+++.|.|++|+||||||.+++..... .-..++|++.....+.. .++.++..... ....+.++....
T Consensus 381 ~~G~lilI~G~pGsGKTtLaLqia~~~a~---~G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~I~~~~~~e~il~~ 452 (2050)
T 3cmu_A 381 PMGRIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEI 452 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHT---TTCCEEEECTTSCCCHH-----HHHHTTCCTTTCEEECCSSHHHHHHH
T ss_pred cCCcEEEEEeCCCCCHHHHHHHHHHHHHh---cCCeEEEEEcCCCHHHH-----HHHHcCCCHHHeEEeCCCCHHHHHHH
Confidence 46789999999999999999999887742 22357888877766543 25667764321 123455666555
Q ss_pred HHHHh-cCCCeEEEEecCCC
Q 045686 248 ILSNL-RGKKFVLLLDDVWE 266 (885)
Q Consensus 248 l~~~l-~~k~~LlVLDdv~~ 266 (885)
+.... ..+.-++|+|.+..
T Consensus 453 ~~~lv~~~~~~lIVIDSL~a 472 (2050)
T 3cmu_A 453 CDALARSGAVDVIVVDSVAA 472 (2050)
T ss_dssp HHHHHHHTCCSEEEESCGGG
T ss_pred HHHHHHhcCCcEEEECCHHH
Confidence 55444 34667999999854
No 495
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=91.99 E-value=0.087 Score=56.21 Aligned_cols=27 Identities=26% Similarity=0.135 Sum_probs=24.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
....+++|+|++|+|||||++.++...
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 567899999999999999999999754
No 496
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=91.96 E-value=0.088 Score=54.56 Aligned_cols=25 Identities=32% Similarity=0.349 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 045686 173 EKVIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 173 ~~vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
.++|.|+|+.|+||||||+.++...
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3689999999999999999998875
No 497
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=91.93 E-value=0.19 Score=48.84 Aligned_cols=53 Identities=21% Similarity=0.293 Sum_probs=34.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHH
Q 045686 173 EKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILR 227 (885)
Q Consensus 173 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~ 227 (885)
+.+|.|-|+.|+||||+++.++..... ..+..+.+..-.....+.+..++++.
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~~--~~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLEQ--LGIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHHH--TTCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH--cCCCcceeeeCCCCCHHHHHHHHHHh
Confidence 568999999999999999999988753 33423333322222234444555554
No 498
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=91.92 E-value=0.26 Score=62.36 Aligned_cols=85 Identities=14% Similarity=0.137 Sum_probs=0.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhccCCCCccEEEEEEEcCcccHHHHHHHHHHHcCCCccc---cCCCChhHHHHHH
Q 045686 172 NEKVIGLYGMGGVGKTTLLKKLNNKFRDTGHDFDLVIWVKVSRDANLEKIQESILRRFEIPDQM---WIGKDEDGRANEI 248 (885)
Q Consensus 172 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 248 (885)
..+++.|.|++|+||||||.+++... ...-..++|++.....+... ++.++..... ....+.++....+
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~~~---~~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~i~~~~~~e~~l~~l 453 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIAAA---QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 453 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHH---HHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH---HHhCCCeEEEEccCchHHHH-----HHHcCCCHHHeEEcCCCCHHHHHHHH
Q ss_pred HHHh-cCCCeEEEEecC
Q 045686 249 LSNL-RGKKFVLLLDDV 264 (885)
Q Consensus 249 ~~~l-~~k~~LlVLDdv 264 (885)
.... ..+.-++|+|.+
T Consensus 454 ~~lv~~~~~~lVVIDSL 470 (1706)
T 3cmw_A 454 DALARSGAVDVIVVDSV 470 (1706)
T ss_dssp HHHHHHTCCSEEEESCS
T ss_pred HHHHHhcCCCEEEECCH
No 499
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=91.91 E-value=0.082 Score=54.23 Aligned_cols=28 Identities=29% Similarity=0.344 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 045686 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (885)
Q Consensus 171 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 198 (885)
....++.|+|++|+|||||+..++....
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 3678999999999999999999987553
No 500
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=91.87 E-value=0.086 Score=50.48 Aligned_cols=25 Identities=32% Similarity=0.422 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 045686 173 EKVIGLYGMGGVGKTTLLKKLNNKF 197 (885)
Q Consensus 173 ~~vi~I~G~gG~GKTtLa~~v~~~~ 197 (885)
.-.|+|+|.+|+|||||++.+....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3578999999999999999998765
Done!