BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>045687
MNLAEFLTEPPPDSDSENYEVLLQNWIKANKVCRSTILSTLSNELYDVYSQHKFAYEIWA
QLRKKYIIEDAGAQNFKMAEDKEVTSQIHGFHMLINDLKNENIILPESFMTIDQLEKAKE
ITSKANIVKNEAHPSKNQKPNKKFFKNKKTTFKKKKGNCYVCGKPGHFANKCRYRKGDHK
PPKANLVDGEDIIVAVVVTQENMVAAKGKKNG

High Scoring Gene Products

Symbol, full name Information P value
AT4G00980 protein from Arabidopsis thaliana 6.7e-06

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  045687
        (212 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2134618 - symbol:AT4G00980 species:3702 "Arabi...   109  6.7e-06   2


>TAIR|locus:2134618 [details] [associations]
            symbol:AT4G00980 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
            InterPro:IPR001878 InterPro:IPR003173 InterPro:IPR009057
            Pfam:PF02229 PROSITE:PS50158 SMART:SM00343 EMBL:CP002687
            GenomeReviews:CT486007_GR GO:GO:0006355 GO:GO:0003677 GO:GO:0008270
            Gene3D:1.10.10.60 GO:GO:0003713 InterPro:IPR014876 Pfam:PF08766
            EMBL:BT005886 EMBL:AK117983 IPI:IPI00544798 RefSeq:NP_567205.2
            UniGene:At.34490 ProteinModelPortal:Q8GXX5 SMR:Q8GXX5 IntAct:Q8GXX5
            EnsemblPlants:AT4G00980.1 GeneID:827935 KEGG:ath:AT4G00980
            TAIR:At4g00980 HOGENOM:HOG000215958 InParanoid:Q8GXX5
            PhylomeDB:Q8GXX5 ProtClustDB:CLSN2690681 Genevestigator:Q8GXX5
            Uniprot:Q8GXX5
        Length = 488

 Score = 109 (43.4 bits), Expect = 6.7e-06, Sum P(2) = 6.7e-06
 Identities = 23/95 (24%), Positives = 54/95 (56%)

Query:    24 QNWIKANKVCRSTILSTLSNELYDVYSQH-KFAYEIWAQLRKKYIIEDAGAQN------- 75
             + W++ + +C + ++++LS+ LY  YSQ  K A E+W +L+  Y  +++ ++        
Sbjct:   251 KKWLRDDYLCYTHLMNSLSDHLYRRYSQKFKHAKELWDELKWVYQCDESKSKRSQVRKYI 310

Query:    76 -FKMAEDKEVTSQIHGFHMLINDLKNENIILPESF 109
              F+M E++ +  Q+  F+ + + + +  + L E+F
Sbjct:   311 EFRMVEERPILEQVQVFNKIADSIVSAGMFLDEAF 345

 Score = 56 (24.8 bits), Expect = 6.7e-06, Sum P(2) = 6.7e-06
 Identities = 15/53 (28%), Positives = 21/53 (39%)

Query:   159 CYVCGKPGHFANKCRYRKGDHKPP-KANLVDGEDIIVAVVVTQENMVAAKGKK 210
             C  CG+ GH A  C   K D +   K+N ++     VA  V  E        +
Sbjct:   438 CDNCGRKGHLAKHCWGSKSDERASGKSNRINSS---VAAPVESETQATTNNDR 487


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.132   0.385    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      212       191   0.00094  110 3  11 23  0.36    33
                                                     31  0.43    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  599 (64 KB)
  Total size of DFA:  177 KB (2103 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.04u 0.13s 17.17t   Elapsed:  00:00:01
  Total cpu time:  17.04u 0.13s 17.17t   Elapsed:  00:00:01
  Start:  Fri May 10 00:26:07 2013   End:  Fri May 10 00:26:08 2013

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