BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045687
(212 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|38194910|gb|AAR13298.1| gag-pol polyprotein [Phaseolus vulgaris]
Length = 1290
Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 100/263 (38%), Positives = 139/263 (52%), Gaps = 63/263 (23%)
Query: 2 NLAEFLTEPPPDSDSENYEVLLQNWIKANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQ 61
+A LT PDS + +V +WI ANKVCR T+LS LSN+L+DVY+ +K A +IW
Sbjct: 59 GVAHALTTAKPDSTTAAKQV--DDWIHANKVCRHTLLSVLSNDLFDVYASYKNAKDIWDS 116
Query: 62 LRKKYIIEDAGAQNF--------KMAEDKEVTSQIHGFHMLINDLKNENIILPESFMTID 113
L KY ED Q F +M + K++ QI+ +H LI D+K E+I LP+ F++
Sbjct: 117 LILKYTAEDIVRQRFVIAKYYRWEMIKGKDIKIQINEYHKLIEDIKTESIKLPDEFVSEL 176
Query: 114 QLEKAKE---------------------IT---------------------SKANIVKNE 131
+EK + IT +KAN+++++
Sbjct: 177 LIEKLPQSWTDYKQQLKHRQKQMSLSDLITHIIIEDTNRKECAAAKAKALSAKANVIEDK 236
Query: 132 AHPSK-------NQKPNKKFFKNKKT--TFKKKKGNCYVCGKPGHFANKCRYRKGDHKPP 182
P + +KPN KF + T TF KKKGNC+VCGKPGH A +CR+R + PP
Sbjct: 237 PAPKRYEKKFDHKKKPNNKFSRPSGTNPTF-KKKGNCFVCGKPGHHAPQCRHRAKNDYPP 295
Query: 183 KANLVDGEDIIVAVVVTQENMVA 205
KANL +GED IVA VV+Q N+V
Sbjct: 296 KANLAEGEDTIVA-VVSQVNLVT 317
>gi|147781792|emb|CAN72171.1| hypothetical protein VITISV_036207 [Vitis vinifera]
Length = 1096
Score = 119 bits (299), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 74/189 (39%), Positives = 95/189 (50%), Gaps = 54/189 (28%)
Query: 1 MNLAEFLTEPPPDSDSENYEVLLQNWIKANKVCRSTILSTLSNELYDVYSQHKFAYEIWA 60
+NL L +P P S LL W NK R I STLSNEL+D+Y Q K A EIW
Sbjct: 37 VNLGHILIDPKPKDGSH----LLPTWETGNKQVRHAIPSTLSNELFDIYCQFKVAKEIWD 92
Query: 61 QLRKKYIIEDAGA--------QNFKMAEDKEVTSQIHGFHMLINDLKNENIILPESFMT- 111
+ KKYI+EDAG +NF+M EDK+V+SQIH +H+LINDL E+I LPE FM
Sbjct: 93 AMNKKYILEDAGTHKYVIGNFRNFQMTEDKDVSSQIHDYHLLINDLAIEDIKLPEPFMVG 152
Query: 112 -----------------------------------------IDQLEKAKEITSKANIVKN 130
D +EKAKE++SKAN+V+
Sbjct: 153 YLVETLPESWKDYKNNMKHKMKQMSLEDVIIHIRIEEQNRNRDNIEKAKELSSKANVVEE 212
Query: 131 EAHPSKNQK 139
++ P N+K
Sbjct: 213 KSKPKNNRK 221
>gi|147838590|emb|CAN76580.1| hypothetical protein VITISV_025642 [Vitis vinifera]
Length = 1046
Score = 117 bits (292), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 88/254 (34%), Positives = 117/254 (46%), Gaps = 70/254 (27%)
Query: 3 LAEFLTEPPPDSDSENYEVLLQNWIKANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQL 62
L LT+P + S LL W NK R ILSTLS E++D+Y Y I
Sbjct: 39 LGHILTDPKLEDGSH----LLPTWETRNKQVRHAILSTLSXEIFDIYYVXTQKYAI---- 90
Query: 63 RKKYIIEDAGAQNFKMAEDKEVTSQIHGFHMLINDLKNENIILPESFMTI---------- 112
+NF+M ED++V+SQIH +H+LINDL E+I LP FM
Sbjct: 91 --------XNFRNFQMMEDRDVSSQIHDYHLLINDLAIEDIKLPGPFMASYLVETLLKSW 142
Query: 113 --------------------------------DQLEKAKEITSKANIVKNEAHPSKNQKP 140
D +EKAKE++SKAN+V+ + P KN +
Sbjct: 143 KDXXXNMKHKRKQMSLEDVIIHIRIEEQNRNRDNVEKAKELSSKANVVEEKPKP-KNNRS 201
Query: 141 NKKFFKNK-------KTTFKKKKGNCYVCGKPGHFANKCRYRKGDHKP-PKANLVDGEDI 192
K+ F+ K + + KK+GNC+VCGK H A +CR+RK K KANLV E I
Sbjct: 202 RKQNFRTKPNASNKVQQSTIKKRGNCFVCGKSRHHAAQCRHRKRTEKSNSKANLVXAEVI 261
Query: 193 IVAV---VVTQENM 203
+ V T NM
Sbjct: 262 TKVISFEVSTVTNM 275
>gi|147805294|emb|CAN78262.1| hypothetical protein VITISV_006704 [Vitis vinifera]
Length = 565
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 65/142 (45%), Positives = 84/142 (59%), Gaps = 14/142 (9%)
Query: 1 MNLAEFLTEPPPDSDSENYEVLLQNWIKANKVCRSTILSTLSNELYDVYSQHKFAYEIWA 60
+NL LT+P P S LL W NK R ILSTLSNEL+D+Y Q K A EIW
Sbjct: 37 VNLEHILTDPKPKDGSH----LLPTWETGNKQVRHAILSTLSNELFDIYCQFKVAKEIWD 92
Query: 61 QLRKKYIIEDAGAQ--------NFKMAEDKEVTSQIHGFHMLINDLKNENIILPESFMTI 112
+ KKYI+EDA Q NF+M ED++V+SQIH +H+LINDL E+I LPE F+
Sbjct: 93 AMNKKYILEDAETQKYAIGNFRNFQMIEDRDVSSQIHDYHLLINDLAIEDIKLPEPFVVA 152
Query: 113 D--QLEKAKEITSKANIVKNEA 132
++ K+ SK N+ + E
Sbjct: 153 QCRHKKRTKKTNSKENLAETEV 174
>gi|147800584|emb|CAN72993.1| hypothetical protein VITISV_002698 [Vitis vinifera]
Length = 1209
Score = 103 bits (256), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 95/195 (48%), Gaps = 21/195 (10%)
Query: 32 VCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQ--------NFKMAEDKE 83
+CR IL+ LS+ LYD+Y+ EIW L KY E+ G + +FK +K
Sbjct: 19 ICRGHILNALSDRLYDLYTNTYSXREIWEALENKYKXEEEGTKKFLISQYIDFKFFXEKP 78
Query: 84 VTSQIHGFHMLINDLKNENIILPESFMTIDQLEKAKEITSKANIVKNEAHPSKNQKPNKK 143
QIH +++N LK I E+F + K + KAN V HP BK+
Sbjct: 79 XLPQIHELQVIVNKLKVLKIEXXEAFQVGAIVAKLPS-SWKANAVSKANHPRGKNNNBKR 137
Query: 144 ----FFKNKKTT--FKKKKGNCYVCGKPGHFANKCRYRKGDHKPPKANLVDGEDIIVAVV 197
+ KK FK KKG C+VCGKPGH+A +CRYRK D K N +D E ++
Sbjct: 138 NSGNYMSPKKNXEQFKGKKGXCFVCGKPGHYARECRYRK-DLKGAVVNAIDEE-----II 191
Query: 198 VTQENMVAAKGKKNG 212
T ++ +GK G
Sbjct: 192 ATLSDVCVVQGKVQG 206
>gi|147767180|emb|CAN66959.1| hypothetical protein VITISV_013138 [Vitis vinifera]
Length = 1234
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/238 (29%), Positives = 106/238 (44%), Gaps = 63/238 (26%)
Query: 32 VCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQ--------NFKMAEDKE 83
+CR IL+ LS+ LYD+Y+ A EIW L KY E+ G + +FK ++K
Sbjct: 75 ICRGHILNALSDRLYDLYTNTNSAREIWEALENKYKAEEEGTKKFLISQYIDFKFFDEKP 134
Query: 84 VTSQIHGFHMLINDLKNENIILPESFM--------------------------TIDQLEK 117
+ QIH +++N LK I LPE+F ++++++K
Sbjct: 135 LLPQIHELQVIVNKLKVLKIELPEAFQVGAIVAKLPSSWKGYRKRILHKSEDYSLEEIQK 194
Query: 118 AKEI-----------------TSKANIVKNEAHP------SKNQKPNKKFFKNKKTTFKK 154
I T+KAN + HP +K N K + FK
Sbjct: 195 HLRIEEESRSRDKMVEESNGGTNKANAISKANHPRGKNNNNKKNSGNYMSPKKNQEQFKG 254
Query: 155 KKGNCYVCGKPGHFANKCRYRKGDHKPPKANLVDGEDIIVAVVVTQENMVAAKGKKNG 212
KKG C+VCGKPGH+A +CR+RK D K N +D E ++ T ++ +GK G
Sbjct: 255 KKGXCFVCGKPGHYARECRFRK-DQKGAVVNAIDEE-----IIATLSDVCVVQGKVQG 306
>gi|147804859|emb|CAN66873.1| hypothetical protein VITISV_021427 [Vitis vinifera]
Length = 1473
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/238 (29%), Positives = 106/238 (44%), Gaps = 63/238 (26%)
Query: 32 VCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQ--------NFKMAEDKE 83
+CR IL+ LS+ LYD+Y+ A EIW L KY E+ G + +FK ++K
Sbjct: 75 ICRGHILNALSDRLYDLYTNTXSAREIWEALENKYKAEEEGTKKFLISQYIDFKFFDEKP 134
Query: 84 VTSQIHGFHMLINDLKNENIILPESFM--------------------------TIDQLEK 117
+ QIH +++N LK I LPE+F ++++++K
Sbjct: 135 LLPQIHELQVIVNKLKVLKIELPEAFQVGAIVAKLPSSWKGYRKRILHKSEDYSLEEIQK 194
Query: 118 AKEI-----------------TSKANIVKNEAHP------SKNQKPNKKFFKNKKTTFKK 154
I T+KAN + HP +K N K + FK
Sbjct: 195 HLRIEEESRSRDKMVEESNGGTNKANAISKANHPRGKNNNNKKNSGNYMSPKKNQEQFKG 254
Query: 155 KKGNCYVCGKPGHFANKCRYRKGDHKPPKANLVDGEDIIVAVVVTQENMVAAKGKKNG 212
KKG C+VCGKPGH+A +CR+RK D K N +D E ++ T ++ +GK G
Sbjct: 255 KKGPCFVCGKPGHYARECRFRK-DQKGAVVNAIDEE-----IIATLSDVCVVQGKVQG 306
>gi|147857754|emb|CAN78666.1| hypothetical protein VITISV_032507 [Vitis vinifera]
Length = 804
Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 71/238 (29%), Positives = 106/238 (44%), Gaps = 63/238 (26%)
Query: 32 VCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQ--------NFKMAEDKE 83
+CR IL+ LS+ LYD+Y+ A EIW L KY E+ G + +FK ++K
Sbjct: 75 ICRGHILNALSDRLYDLYTNTNSAREIWEALENKYKAEEEGTKKFLISQYIDFKFFDEKP 134
Query: 84 VTSQIHGFHMLINDLKNENIILPESFM--------------------------TIDQLEK 117
+ QIH +++N LK I LPE+F ++++++K
Sbjct: 135 LLPQIHELQVIVNKLKVLKIELPEAFQVGAIVAKLPSSWKGYRKRILHKSEDYSLEEIQK 194
Query: 118 AKEI-----------------TSKANIVKNEAHP------SKNQKPNKKFFKNKKTTFKK 154
I T+KAN + HP +K N K + FK
Sbjct: 195 HLRIKEESRSRDKMVEESNGGTNKANAISKANHPRGKNNNNKKNSGNYMSPKKNQEQFKG 254
Query: 155 KKGNCYVCGKPGHFANKCRYRKGDHKPPKANLVDGEDIIVAVVVTQENMVAAKGKKNG 212
KKG C+VCGKPGH+A +CR+RK D K N +D E ++ T ++ +GK G
Sbjct: 255 KKGPCFVCGKPGHYARECRFRK-DQKGVVVNAIDEE-----IIATLSDVCVVQGKVQG 306
>gi|359493505|ref|XP_002263348.2| PREDICTED: wall-associated receptor kinase 2-like [Vitis vinifera]
Length = 1182
Score = 96.7 bits (239), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 73/238 (30%), Positives = 107/238 (44%), Gaps = 63/238 (26%)
Query: 32 VCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQ--------NFKMAEDKE 83
+CR IL+ LS+ LYD+Y+ A EIW L KY E+ G + +FK ++K
Sbjct: 67 ICRGHILNALSDRLYDLYTNTYSAREIWEALENKYKAEEEGTKKFLISQYIDFKFFDEKP 126
Query: 84 VTSQIHGFHMLINDLKNENIILPESFM--------------------------TIDQLEK 117
+ QIH +++N LK I LPE+F ++++++K
Sbjct: 127 LLPQIHELQVIVNKLKVLKIELPEAFQVGAIVAKLPSSWKGYRKRILHKSEDYSLEEIQK 186
Query: 118 AKEI-----------------TSKANIVKNEAHP---SKNQKPNKKFF---KNKKTTFKK 154
I T+KAN V HP + N K N + K + FK
Sbjct: 187 HLRIEEELRSRDKMAEESNGGTNKANAVSKANHPRGKNNNDKRNSGNYMSPKKNQEQFKG 246
Query: 155 KKGNCYVCGKPGHFANKCRYRKGDHKPPKANLVDGEDIIVAVVVTQENMVAAKGKKNG 212
KKG C+VCGK GH+A +CRYRK D K N +D E ++ T ++ +GK G
Sbjct: 247 KKGPCFVCGKLGHYARECRYRK-DLKGVVVNAIDEE-----IIATLSDVCVVQGKVQG 298
>gi|147782562|emb|CAN68340.1| hypothetical protein VITISV_025981 [Vitis vinifera]
Length = 791
Score = 96.7 bits (239), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 105/235 (44%), Gaps = 63/235 (26%)
Query: 32 VCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQ--------NFKMAEDKE 83
+CR IL+ LS+ LYD+Y+ A EIW L KY E+ G + +FK ++K
Sbjct: 75 ICRGHILNALSDRLYDLYTNTNSAREIWEALENKYKAEEEGTKRFLISQYIDFKFVDEKP 134
Query: 84 VTSQIHGFHMLINDLKNENIILPESFM--------------------------TIDQLEK 117
+ QIH +++N LK I LPE+F ++++++K
Sbjct: 135 LLPQIHKLQVIVNKLKVLKIELPEAFQVGAIVVKLPSSWKGYRKRILHKSEDYSLEEIQK 194
Query: 118 AKEI-----------------TSKANIVKNEAHPSKNQKPNKKFF------KNKKTTFKK 154
I T+KAN V HP NKK K + FK
Sbjct: 195 HLRIEEESRSRDKMVEESNGGTNKANAVSKANHPKGKNNNNKKNSGNYMSPKKNQEQFKG 254
Query: 155 KKGNCYVCGKPGHFANKCRYRKGDHKPPKANLVDGEDIIVAVVVTQENMVAAKGK 209
KKG C+VCGKPGH+A +CRYRK + K N +D E ++ T ++ +GK
Sbjct: 255 KKGLCFVCGKPGHYARECRYRK-NQKGAVVNAIDEE-----IIATLSDVCVVQGK 303
>gi|359497847|ref|XP_003635668.1| PREDICTED: uncharacterized protein LOC100854178, partial [Vitis
vinifera]
Length = 478
Score = 96.3 bits (238), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 80/272 (29%), Positives = 125/272 (45%), Gaps = 69/272 (25%)
Query: 1 MNLAEFLTEPPPD--SDSENYEVL--LQNWIKANKVCRSTILSTLSNELYDVYSQHKFAY 56
+NLA FLTE P D + +V+ + W ++ +CR+ +++ L++ LY+VYS K A
Sbjct: 63 LNLARFLTEDAPKLKEDEHDIQVISAIDAWKHSDFLCRNYVMNGLADSLYNVYSDKKTAK 122
Query: 57 EIWAQLRKKYIIEDAGAQNF--------KMAEDKEVTSQIHGFHMLINDLKNENIILPES 108
E+W L +KY EDAGA+ F KM + K V SQ+ ++++++ E ++L E+
Sbjct: 123 ELWESLDRKYKTEDAGAKKFVVGRFLDYKMVDSKTVVSQVQELQVILHEIHAEGMMLSET 182
Query: 109 FMTIDQLEKA---------------KEIT---------------------------SKAN 126
F +EK KE++ +KAN
Sbjct: 183 FQVAAIIEKLPPAWKDFKNYLKHKRKEMSIEDLIIRLRIEEDNRRSEKKGAHTLNEAKAN 242
Query: 127 IVKNEAHPSKNQKPNKKFFKNKKTTFK-------KKKGNCYVCGKPGHFANKCRYRKGDH 179
V E S N K N K K K K +G C+ CGK GH + CR K +
Sbjct: 243 FV--EHGQSSNAKTNNNKGKGSKLGPKGGISKKPKFQGKCFNCGKQGHKSVDCRLPK-KN 299
Query: 180 KPPKANLVDG-----EDIIVAVVVTQENMVAA 206
KP +AN++D DI + VV++ N+V +
Sbjct: 300 KPKEANVIDDITKNVYDIDLTTVVSEVNLVGS 331
>gi|147804664|emb|CAN66637.1| hypothetical protein VITISV_011340 [Vitis vinifera]
Length = 1316
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 79/277 (28%), Positives = 127/277 (45%), Gaps = 71/277 (25%)
Query: 1 MNLAEFLTEPPPD--SDSENYEVL--LQNWIKANKVCRSTILSTLSNELYDVYSQHKFAY 56
+NLA FLTE P D + +V+ + W ++ +CR+ +++ L++ LY+VYS K A
Sbjct: 63 LNLARFLTEDAPKLKEDEHDIQVISAIDAWKHSDFLCRNYVMNGLADSLYNVYSDKKTAK 122
Query: 57 EIWAQLRKKYIIEDAGAQNF--------KMAEDKEVTSQIHGFHMLINDLKNENIILPES 108
E+W L +KY EDAGA+ F KM + K V SQ+ ++++++ E ++L E+
Sbjct: 123 ELWESLDRKYKTEDAGAKKFVVGRFLDYKMVDSKTVVSQVQELQVILHEIHAEGMMLSET 182
Query: 109 FMTIDQLEKA---------------KEIT---------------------------SKAN 126
F +EK KE++ +KAN
Sbjct: 183 FQVAAIIEKLPPAWKDFKNYLKHKRKEMSIEDLIIRLRIEEDNRRSEKKGAHTLNEAKAN 242
Query: 127 IV--------KNEAHPSKNQKPNKKFFKNKKTTFKKKKGNCYVCGKPGHFANKCRYRKGD 178
V K + K K K +KK F +G C+ CGK GH + CR K
Sbjct: 243 FVEHGQSSKAKTNNNKGKGSKLGPKGGISKKPKF---QGKCFNCGKQGHKSVDCRLPK-K 298
Query: 179 HKPPKANLVDG-----EDIIVAVVVTQENMVAAKGKK 210
+KP +AN++D DI + VV++ N+V + K+
Sbjct: 299 NKPKEANVIDDITKNVYDIDLTAVVSEVNLVGSNPKE 335
>gi|147818102|emb|CAN73567.1| hypothetical protein VITISV_003451 [Vitis vinifera]
Length = 1277
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 127/274 (46%), Gaps = 65/274 (23%)
Query: 1 MNLAEFLTEPPPD--SDSENYEVL--LQNWIKANKVCRSTILSTLSNELYDVYSQHKFAY 56
+NLA FLTE P D + +V+ + W ++ +CR+ +++ L++ LY+VYS K A
Sbjct: 63 LNLARFLTEDAPKLKEDEHDIQVISAIDAWKHSDFLCRNYVMNGLTDSLYNVYSDKKTAK 122
Query: 57 EIWAQLRKKYIIEDAGAQNF--------KMAEDKEVTSQIHGFHMLINDLKNENIILPES 108
E+W L +KY EDAGA+ F KM + K V SQ+ ++++++ + ++L E+
Sbjct: 123 ELWESLDRKYKTEDAGAKKFVVGRFLDYKMVDSKTVVSQVQELQVILHEIHADGMMLSET 182
Query: 109 FMTIDQLEKA---------------KEITSKANIVK------------------NEAHP- 134
F +EK KE++ + I++ NEA
Sbjct: 183 FQVAAIIEKLPPAWKDFKNYLKHKRKEMSIEDLIIRLRIEEDNRRSEKKGAHTLNEAQAN 242
Query: 135 ------SKNQKPNKKFFKNKKTTFK-------KKKGNCYVCGKPGHFANKCRYRKGDHKP 181
S K N K K K K +G C+ CGK GH + CR K +KP
Sbjct: 243 FVEHGQSSKAKTNNNKGKGSKLGPKGGISKKPKFQGKCFNCGKQGHKSVDCRLPK-KNKP 301
Query: 182 PKANLVDG-----EDIIVAVVVTQENMVAAKGKK 210
+AN++D DI + VV++ N+V + K+
Sbjct: 302 KEANVIDNITKNVSDIDLTTVVSEVNLVGSNPKE 335
>gi|359476117|ref|XP_003631792.1| PREDICTED: uncharacterized protein LOC100252656 [Vitis vinifera]
Length = 946
Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 79/275 (28%), Positives = 130/275 (47%), Gaps = 67/275 (24%)
Query: 1 MNLAEFLTEPPPD--SDSENYEVL--LQNWIKANKVCRSTILSTLSNELYDVYSQHKFAY 56
+NLA FLTE P D + +V+ + W ++ +CR+ +++ L++ LY+VYS K A
Sbjct: 63 LNLARFLTEDAPKLKEDEHDIQVISAIDAWKHSDFLCRNYVMNGLADSLYNVYSDKKIAK 122
Query: 57 EIWAQLRKKYIIEDAGAQNF--------KMAEDKEVTSQIHGFHMLINDLKNENIILPES 108
E+W L +KY EDAGA+ F KM + K V SQ+ ++++++ E ++L E+
Sbjct: 123 ELWESLDRKYKTEDAGAKKFVVGRFLDYKMVDSKTVVSQVQELQVILHEIHAEGMMLSET 182
Query: 109 FMTIDQLEKA---------------KEIT---------------------------SKAN 126
F +EK KE++ +KAN
Sbjct: 183 FQVAAIIEKLPPAWKDFKNCLKHKRKEMSIEDLIIRLRIEEDNRRSEKKGVHTLNEAKAN 242
Query: 127 IVKNEAHPSKNQKPNKKFFKNK---KTTFKKK---KGNCYVCGKPGHFANKCRYRKGDHK 180
V++ SK + N K +K K KK +G C+ CGK GH + CR K +K
Sbjct: 243 FVEH-GQSSKAKTNNNKGKGSKLGPKGGISKKPKFQGKCFNCGKQGHKSVDCRLPK-KNK 300
Query: 181 PPKANLVDG-----EDIIVAVVVTQENMVAAKGKK 210
P +AN++D +I + VV++ N+V + K+
Sbjct: 301 PKEANVIDNITKNVSNIDLTAVVSEVNLVGSNPKE 335
>gi|147773790|emb|CAN69713.1| hypothetical protein VITISV_011261 [Vitis vinifera]
Length = 382
Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 75/261 (28%), Positives = 119/261 (45%), Gaps = 60/261 (22%)
Query: 1 MNLAEFLTEPPP----DSDSENYEVLLQNWIKANKVCRSTILSTLSNELYDVYSQHKFAY 56
+NLA+ L E P ++ +++ W ++ +C++ IL+ L +Y+VYSQ K +
Sbjct: 44 LNLAKVLHEDAPTLKEGETNKKIVAVVEAWKHSDFLCKNYILNGLDKTMYNVYSQVKTSK 103
Query: 57 EIWAQLRKKYIIEDAGAQ--------NFKMAEDKEVTSQIHGFHMLINDLKNENIILPES 108
E W L KKY ED G + ++KM + K VTSQ+ +++++L E + L ES
Sbjct: 104 EXWESLEKKYKTEDVGMKKSIVGRFLDYKMVDSKTVTSQVQELQIILHELHAEKMELSES 163
Query: 109 FMTIDQLEKA---------------KE---------------------------ITSKAN 126
F +EK KE + SKAN
Sbjct: 164 FQVAAIVEKLLPSWKDFKNYLKHKRKEMGLEDLIXXLKXEEDNCVSEKKVGKHPMESKAN 223
Query: 127 IVKNEAHPSKNQKPNKKFFKNKKTTFKKKKGNCYVCGKPGHFANKCRYRKGDHKPPKANL 186
+V E +K +K + K +KK G CY+C K GH A CR KG K KA++
Sbjct: 224 LV--EPKANKKRKHFGESLSQGKNKYKKFLGKCYICNKQGHRAKXCRL-KGQSKENKAHV 280
Query: 187 VDGEDI---IVAVVVTQENMV 204
+ E++ + A+V+ + NMV
Sbjct: 281 TEEEELANMLSALVLFEVNMV 301
>gi|147791706|emb|CAN64015.1| hypothetical protein VITISV_031523 [Vitis vinifera]
Length = 272
Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 99/201 (49%), Gaps = 58/201 (28%)
Query: 62 LRKKYIIEDAGAQ--------NFKMAEDKEVTSQIHGFHMLINDLKNENIILPESF---- 109
+ KKYI+EDAG Q NF+M D++V+SQIH +H+LINDL ++I LPE F
Sbjct: 1 MNKKYILEDAGTQKYVIGNFRNFQMTGDRDVSSQIHNYHLLINDLAIKDIKLPEPFVVGY 60
Query: 110 ----------------------MTI----------------DQLEKAKEITSKANIVKNE 131
M++ D +EKAKE++SKAN+V+ +
Sbjct: 61 LVETLLESWKDYKNNMKHKKKQMSLEDVIIHIRIEEQNRNKDNIEKAKELSSKANVVEEK 120
Query: 132 AHPSKN--QKPNKKFFKNKKTTFK----KKKGNCYVCGKPGHFANKCRYRKGDHKP-PKA 184
+ P N +K N + N + KK+GN V GK H A +C +RK K KA
Sbjct: 121 SKPKNNRSRKQNSRTKSNASNKVQNSTIKKRGNFCVYGKSRHCAVQCHHRKKTEKTNSKA 180
Query: 185 NLVDGEDIIVAVVVTQENMVA 205
NL E +I +V+ ++ +MV
Sbjct: 181 NLAKIE-VITSVIFSKVSMVT 200
>gi|33113964|gb|AAP94586.1| putative retrotransposon RIRE1 poly protein [Zea mays]
Length = 1309
Score = 85.5 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 59/212 (27%), Positives = 90/212 (42%), Gaps = 57/212 (26%)
Query: 26 WIKANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQ--------NFK 77
W +AN+ C S +L+ LSN L+DVYS A +W L ++ D G + N+K
Sbjct: 82 WDEANEACLSRLLNVLSNRLFDVYSAFTSAKGLWTDLENEFSEVDNGNESFTTENYLNYK 141
Query: 78 MAEDKEVTSQIHGFHMLINDLKNENIILPESF--------------------------MT 111
M E + V Q+ +L+ DL +LP+SF MT
Sbjct: 142 MVEGRSVMEQLQEIQLLVRDLVQYGCVLPDSFQVNAILAKLPPSWRDFVTSRRHMKKQMT 201
Query: 112 IDQLEKAKEITSKANIVKNEAHPSKNQKP-------NKKFFKNKKTTFKKKKGN------ 158
+ +L A + +A ++ PS+ + ++KF K KK + +K
Sbjct: 202 LTELSAAINVEERA---RSSNKPSQQLQAHVVEKGGDRKFQKKKKNSPQKNLNQPKSKKM 258
Query: 159 -------CYVCGKPGHFANKCRYRKGDHKPPK 183
CYVCG GH A +C+ RKG PP+
Sbjct: 259 KKKEDFICYVCGVSGHTARRCKLRKGKGPPPQ 290
>gi|14586969|gb|AAK70407.1|AF369930_2 pol polyprotein [Citrus x paradisi]
Length = 701
Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 75/263 (28%), Positives = 121/263 (46%), Gaps = 63/263 (23%)
Query: 1 MNLAEFLTE--PPPDSDSENYEVL--LQNWIKANKVCRSTILSTLSNELYDVYSQHKFAY 56
+NLA FLT+ P P + +V + W ++ +C++ +++ LS+ LY+VY K A
Sbjct: 64 LNLARFLTKDAPKPKEGETDIQVASAIDAWHHSDFLCKNYVMNGLSDSLYNVYIGKKTAK 123
Query: 57 EIWAQLRKKYIIEDAGAQ--------NFKMAEDKEVTSQIHGFHMLINDLKNENIILPES 108
E+W L +KY EDAG + +FKM + K V SQ+ ++++++ E + L E+
Sbjct: 124 ELWESLDRKYKTEDAGTKKFVVGRFLDFKMVDSKTVISQVQELQIILSEILAEGMHLSET 183
Query: 109 F--------------------------MTIDQL-------------EKAKEIT-SKANIV 128
F M I+ L E+ I+ +KAN V
Sbjct: 184 FQVAAIIEKLPPAWKDFKSYLKHKQKEMNIEGLVVKLRIEEDNRNAERIGAISMAKANFV 243
Query: 129 KNEAHPSKNQKPNKKFFKNKKTTFKKKKGNCYVCGKPGHFANKCRYRKGDHKPPKANLVD 188
++ K + K K+T F +G CY C K GH A+ CR K K +AN+V+
Sbjct: 244 EHGPKKKKKKLGPKGGISKKQTKF---QGKCYNCDKMGHKASDCRLPK---KKREANVVE 297
Query: 189 G-----EDIIVAVVVTQENMVAA 206
DI ++ VV + NMV +
Sbjct: 298 NITQHVSDINLSAVVLEVNMVGS 320
>gi|147780036|emb|CAN62301.1| hypothetical protein VITISV_034115 [Vitis vinifera]
Length = 588
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 86/179 (48%), Gaps = 54/179 (30%)
Query: 78 MAEDKEVTSQIHGFHMLINDLKNENIILPESFM------TI------------------- 112
M ED++V+ QIH H+LINDL E+ L ESF+ TI
Sbjct: 1 MTEDRDVSYQIHDHHLLINDLAIEDTKLLESFVAGYLVETIPESWKDYKNNMKHKRKQMF 60
Query: 113 -----------------DQLEKAKEITSKANIVKNEAHPSKNQ--------KPNKKFFKN 147
D +EKAKE++SKAN+V+ ++ P N+ KPN +
Sbjct: 61 LEDVIIHIRIEEQNLNRDNIEKAKELSSKANVVEEKSKPKNNRSRKQNSQTKPNASNKVH 120
Query: 148 KKTTFKKKKGNCYVCGKPGHFANKCRYRKGDHKP-PKANLVDGEDIIVAVVVTQENMVA 205
T KK GNC+VCGK GH A +CR+RK K KANL + E +I V+ + +MV
Sbjct: 121 NSTI--KKWGNCFVCGKSGHHAPQCRHRKRIEKSNSKANLAEAE-VITIVISFEVSMVT 176
>gi|147802407|emb|CAN63713.1| hypothetical protein VITISV_008235 [Vitis vinifera]
Length = 387
Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 91/208 (43%), Gaps = 45/208 (21%)
Query: 32 VCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQ--------NFKMAEDKE 83
+CR IL+ LS+ LYD+Y+ A EIW L KY E+ G + +FK +K
Sbjct: 75 ICRGHILNALSDRLYDLYTNTYSAREIWEALENKYKAEEEGTKKFLISQYIDFKFFYEKP 134
Query: 84 VTSQIH------------------------GFHMLIN-----DLKNENIILPESFMTIDQ 114
+ QIH GF + KN +
Sbjct: 135 LLPQIHELQRPSKLVLLWLNYHQVGKVTGRGFSTRVKITPWKRFKNIFALRKNRDQETKM 194
Query: 115 LEKAKEITSKANIVKNEAHP---SKNQKPNKKFF---KNKKTTFKKKKGNCYVCGKPGHF 168
+E++ T+KAN V HP + N K N + K + FK KKG C+VCGKP H+
Sbjct: 195 VEESNGGTNKANAVSKANHPKGKNNNDKRNSGNYMSPKKNQEQFKGKKGPCFVCGKPEHY 254
Query: 169 ANKCRYRKGDHKPPKANLVDGEDIIVAV 196
A +CRYRK D K N +D E+II +
Sbjct: 255 ARECRYRK-DLKGAVVNAID-EEIIATL 280
>gi|295799979|emb|CAX68207.1| Copia-like retrotransposon [Helianthus annuus]
Length = 1358
Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 70/265 (26%), Positives = 115/265 (43%), Gaps = 66/265 (24%)
Query: 7 LTEPPPDSDSE--NYEVLLQNWIK--ANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQL 62
+ + PP E N ++ Q I+ A +C I ++LS+ LYD+Y+ K A E+W L
Sbjct: 43 IPDDPPGEAGELPNEDLARQRLIRKEAEDLCLGHIKNSLSDRLYDLYAPIKSARELWKAL 102
Query: 63 RKKYIIEDAGAQ--------NFKMAEDKEVTSQIHGFHMLINDLKNENIILPESFM---- 110
KY + G +F+M +DK + Q+H +L+N L +I LPE F
Sbjct: 103 EDKYKAHEEGTNKYLIAKYLDFQMVDDKSILEQVHELQVLVNKLTALSIPLPEIFQVGVI 162
Query: 111 ----------------------TIDQL-------------EKAKEITSKANIV------K 129
++D+L +K ++ S N V K
Sbjct: 163 IAKLPPGWKDFSKRMMHKSEDYSLDELLKHLRIEEETRNRDKRGKVGSSVNHVAGGSGQK 222
Query: 130 NEAHPSKNQK---PNKKFFKNKKTT---FKKKKGNCYVCGKPGHFANKCRYRKGDHKPPK 183
+ S+N+K P KK FK + T K+ G C+VCG+ GH+A +C RK
Sbjct: 223 GKGASSRNKKFTAPKKKEFKKSQHTNNHQPKRSGKCHVCGETGHYARECSQRKSGSTVGS 282
Query: 184 ANLVDGE---DIIVAVVVTQENMVA 205
+ +D E +++ V + + NM++
Sbjct: 283 TSAIDVEKVTNLVANVGLGEVNMLS 307
>gi|108708056|gb|ABF95851.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1075
Score = 79.3 bits (194), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 93/226 (41%), Gaps = 58/226 (25%)
Query: 33 CRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGA--------QNFKMAEDKEV 84
C ILS LS++ YD+Y H A + L KKY + DAG +FKM K V
Sbjct: 96 CVGRILSMLSDKFYDIYMHHTSARVLRETLEKKYSVPDAGKDLYLVEKYHDFKMTNGKSV 155
Query: 85 TSQIHGFHMLINDLKNENIILPESF--------------------------MTIDQL--- 115
Q +L+ +L + I LP+ F MT+D L
Sbjct: 156 VEQTQELQLLVGELNHSKIALPDKFQVGMVIAKLPPSWRDFATALKHRMEEMTMDDLVAS 215
Query: 116 ----EKAK---------EITSKANIV-----KNEAHPSKN---QKPNKKFFKNKKTTFKK 154
EKA+ + S+ N+ +N+ +P +N KP K K K
Sbjct: 216 LDVEEKARAKDAPLVNEDDNSRVNLTDTHQRRNKKNPKENNSGMKPRGKIDKGNGKKNGK 275
Query: 155 KKGNCYVCGKPGHFANKCRYRKGDHKPPKANLVDGEDIIVAVVVTQ 200
+C+ CGKPGHFA CRY+K + K K D D V +V+ +
Sbjct: 276 GPMSCFECGKPGHFARNCRYKKRNEKVQKDKSDDQTDAKVNMVIDE 321
>gi|147828230|emb|CAN66576.1| hypothetical protein VITISV_016964 [Vitis vinifera]
Length = 1316
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 98/227 (43%), Gaps = 55/227 (24%)
Query: 1 MNLAEFLTEPPP-----DSDSENYEVLLQNWIKANKVCRSTILSTLSNELYDVYSQHKFA 55
+NLA FL E P +++ E V+ W ++ +CR+ +L+ L N LY+VY K A
Sbjct: 233 LNLARFLHEECPILEEGETNKEKVAVV-DAWKHSDFLCRNYMLNGLDNTLYNVYCSLKTA 291
Query: 56 YEIWAQLRKKYIIEDAGAQ--------NFKMAEDKEVTSQIHGFHMLINDLKNENIILPE 107
E+W L KKY EDAG + +FKM + K V SQ+ ++++++ +E + +
Sbjct: 292 KELWDSLDKKYKTEDAGIKKFIVGKFLDFKMIDSKTVISQVQELQVILHEIHSEGMSFSD 351
Query: 108 SFMTIDQLEKA-----------------------------------------KEITSKAN 126
SF +EK + +KAN
Sbjct: 352 SFQVAAVIEKLPPLWKDFKNYLKHKRKEMNLEELIVRLRIEEDNRKSEKKGNNSMEAKAN 411
Query: 127 IVKNEAHPSKNQKPNKKFFKNKKTTFKKKKGNCYVCGKPGHFANKCR 173
+++ +K +K + + KK KG CY CGK GH +N R
Sbjct: 412 VIEQGPKTNKKRKHGDQNQNQESNVAKKFKGKCYNCGKTGHKSNDYR 458
>gi|147827069|emb|CAN77568.1| hypothetical protein VITISV_010611 [Vitis vinifera]
Length = 1067
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 94/209 (44%), Gaps = 34/209 (16%)
Query: 32 VCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQN------------FKM- 78
+CR IL+ LS+ LYD+Y+ A EIW L KY E+ N F++
Sbjct: 95 ICRGHILNALSDRLYDLYTNTYSAREIWEALENKYKAEEEVIVNKLKVLKIELPKAFQVG 154
Query: 79 AEDKEVTSQIHGFHMLI----NDLKNENI-----ILPESFMTIDQLEKAKEITSKANIVK 129
A ++ S G+ I D E I I ES +E++ T+KAN V
Sbjct: 155 AIVAKLPSSWKGYRKRILHKSEDYSLEEIQKHLRIEEESRSRDKMVEESNGGTNKANAVS 214
Query: 130 NEAHPSKNQKPNKK----FFKNKKTT--FKKKKGNCYVCGKPGHFANKCRYRKGDHKPPK 183
HP +K+ + KK FK KK C+VCGK GH+A +CRYRK D K
Sbjct: 215 KANHPRGKNNXDKRNSGNYMSPKKXQEQFKGKKXPCFVCGKXGHYARECRYRK-DLKGVV 273
Query: 184 ANLVDGEDIIVAVVVTQENMVAAKGKKNG 212
N +D E ++ T ++ +GK G
Sbjct: 274 VNAIDEE-----IIATLSDVCVVQGKVQG 297
>gi|147846834|emb|CAN80619.1| hypothetical protein VITISV_005064 [Vitis vinifera]
Length = 965
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 100/205 (48%), Gaps = 31/205 (15%)
Query: 1 MNLAEFLTEPPPDSDSENYEVLLQNWIKANKVCRSTILSTLSNELYDVYSQHKFAYEIWA 60
MNL LT+P P+ E+ L W NK R ILS SNEL+DVYS
Sbjct: 37 MNLGHILTDPKPEDGFES----LPTWEIGNKQVRHDILSIFSNELFDVYS---------- 82
Query: 61 QLRKKYIIEDAGAQNFKMAEDKEVTSQIHGFHMLINDLKNEN-IILPESFMTIDQLEKAK 119
IED + V + + + N++K++ ++ + D +EKAK
Sbjct: 83 -------IEDIKLPK-PLVVGYLVETLLESWKDYKNNMKHKRKQMIEKQNQNRDNVEKAK 134
Query: 120 EITSKANIVKNEAHPSKNQ--KPNKKFFKNKKTTFK----KKKGNCYVCGKPGHFANKCR 173
E++SKAN+++ + P N+ K N + N + KK+G+C+V GK GH A +CR
Sbjct: 135 ELSSKANVIEEKPKPKNNRSKKQNSRTKLNASNKVQNPTIKKRGDCFVYGKFGHHAAQCR 194
Query: 174 YRKGDHKP-PKANLVDGEDIIVAVV 197
++K K K NL + E +I A+V
Sbjct: 195 HKKRIEKLNSKTNLAETE-VITAIV 218
>gi|307135946|gb|ADN33807.1| ty1-copia retrotransposon protein [Cucumis melo subsp. melo]
Length = 1038
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 112/248 (45%), Gaps = 67/248 (27%)
Query: 24 QNWIKANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQ--------N 75
+ + K NK R +L+ +S+ ++D++ K A +IW+ L +Y +DAG +
Sbjct: 88 EKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAKDIWSTLESRYGGDDAGRKKYVVGKWLQ 147
Query: 76 FKMAEDKEVTSQIHGFHMLINDLKNENI---------ILPESF----------------- 109
F+M +DK V QIH + L+ ++ +E + +L E F
Sbjct: 148 FQMTDDKPVVEQIHEYENLVTNVLSEGMKMCEILQANVLLEKFPPSWNDYRNHLKHKKKD 207
Query: 110 ------MTIDQLEKAKEITSK----------ANIVKN-----------EAHPSKNQKPNK 142
++ + E+A + K AN+V++ + H KN + K
Sbjct: 208 LKLHELISHMRTEEANRLKDKLASQNLNSVNANLVESSFVNRDRTKQEKGHKGKNSE--K 265
Query: 143 KFFKNKKTTFKKKKGNCYVCGKPGHFANKCRYRKG--DHKP-PKANLVDGEDIIVAVVVT 199
+ FK KKKK CYVC K GH + +C RKG KP P+ANL + + I+A +V
Sbjct: 266 RQFKTTGGQIKKKKLVCYVCRKEGHKSYQCNQRKGRPSQKPTPQANLAEQDSEIIAAIV- 324
Query: 200 QENMVAAK 207
+ N++ K
Sbjct: 325 EANLIENK 332
>gi|218186479|gb|EEC68906.1| hypothetical protein OsI_37574 [Oryza sativa Indica Group]
Length = 342
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 93/214 (43%), Gaps = 60/214 (28%)
Query: 34 RSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQ--------NFKMAEDKEVT 85
R ++S L++ + DVY ++W L K+ + DAG++ ++KM +D+ V
Sbjct: 32 RGALISVLADNIVDVYMHMPSGKDMWDALEAKFGVSDAGSELYVMEQFYDYKMVDDRSVV 91
Query: 86 SQIHGFHMLINDLKNENIILPESFMT---------------------------------- 111
Q H ML +L+N N LP+ F+T
Sbjct: 92 EQAHEIQMLAKELENNNCELPDKFVTGGIIAKLPPSWSDFATSLKHKRQEFSVIDLIGSL 151
Query: 112 -IDQLEKAKEI-------TSKANIV-KNEAHPSKNQKPNKKFFKNKKTT------FKKKK 156
+++ +AK+I S AN+V K H S N K K K K TT K K
Sbjct: 152 GVEEKARAKDIWGKKVEGGSSANMVQKKNPHASHNNKKVKHDVKPKATTNFKKKGKGKAK 211
Query: 157 GNCYVCGKPGHFANKCRYRKGDHKPPKANLVDGE 190
G+C+VCGKPGH+A C K D K AN+V E
Sbjct: 212 GDCFVCGKPGHWAKDCPEHK-DRK--SANMVISE 242
>gi|255545774|ref|XP_002513947.1| conserved hypothetical protein [Ricinus communis]
gi|223547033|gb|EEF48530.1| conserved hypothetical protein [Ricinus communis]
Length = 169
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/112 (41%), Positives = 62/112 (55%), Gaps = 16/112 (14%)
Query: 2 NLAEFLTEPPPDSDSENYEVLLQNWIKANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQ 61
+A LT+P P +E + W+ ANKVCR TI+STL VY +K A +IW
Sbjct: 66 GVAYALTDPKP---AETTKKEFDLWVYANKVCRHTIISTLY-----VYCAYKEAQQIWDS 117
Query: 62 LRKKYIIEDAGAQNF--------KMAEDKEVTSQIHGFHMLINDLKNENIIL 105
+ KY +DAG Q F +M EDK++ QI+ +H L+ DLK ENI L
Sbjct: 118 MVNKYTAKDAGKQKFVIGKFYKWEMMEDKDIKLQINEYHKLLEDLKGENITL 169
>gi|108705854|gb|ABF93649.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1269
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 82/172 (47%), Gaps = 19/172 (11%)
Query: 34 RSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQ--------NFKMAEDKEVT 85
R ++S L++ + DVY ++W L K+ + DAG++ ++KM +D+ V
Sbjct: 163 RGALISVLADNIVDVYMHMPSGKDMWDALEAKFGVSDAGSELYVMEQFYDYKMVDDRSVV 222
Query: 86 SQIHGFHMLINDLKNENIILPESFMTIDQLEKAKEITSKANIV-KNEAHPSKNQKPNKKF 144
Q H ML +L+N N + E D K E S AN+V K H S N K
Sbjct: 223 EQAHEIQMLAKELENNNCV-EEKARAKDVRGKKVEGGSSANMVQKKNPHASYNNMKVKPD 281
Query: 145 FKNKKTT------FKKKKGNCYVCGKPGHFANKCRYRKGDHKPPKANLVDGE 190
K K T K KG+C+VCGK GH+A C RK D K AN+V E
Sbjct: 282 VKPKAATNFKKKGKGKAKGDCFVCGKSGHWAKDCPERK-DRK--SANMVISE 330
>gi|147809962|emb|CAN76029.1| hypothetical protein VITISV_016069 [Vitis vinifera]
Length = 1096
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 109/222 (49%), Gaps = 43/222 (19%)
Query: 26 WIKANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQNF--------K 77
W ++ +CR+ +++ L++ LY+VYS K A E+W L +KY EDAGA+ F K
Sbjct: 41 WKHSDFLCRNYVMNGLADSLYNVYSDKKTAKELWESLDRKYKTEDAGAKKFVVGRFLDYK 100
Query: 78 MAEDKEVTSQIHGFHMLINDLKN-----------ENIILPESFMTIDQLEKAKEI----- 121
M + K V + + + D KN E++I+ + I++ + E
Sbjct: 101 MVDSKTVL-LLRNYPLPWKDFKNYLKHKRKEMSIEDLIIR---LRIEEDNRRSEKKGAHT 156
Query: 122 --TSKANIVKNEAHPSKNQKPNKKFFKNK---KTTFKKK---KGNCYVCGKPGHFANKCR 173
+KAN V++ SK + N K +K K KK +G C+ CGK GH + CR
Sbjct: 157 LNEAKANFVEH-GQSSKAKTNNNKGKGSKLGPKGGISKKPKFQGKCFNCGKQGHKSVDCR 215
Query: 174 YRKGDHKPPKANLVDG-----EDIIVAVVVTQENMVAAKGKK 210
K +KP +AN++D DI + VV++ N+V + K+
Sbjct: 216 LPK-KNKPKEANVIDDITKNVYDIDLTAVVSEVNLVGSNPKE 256
>gi|147778047|emb|CAN69731.1| hypothetical protein VITISV_005499 [Vitis vinifera]
Length = 189
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 67/121 (55%), Gaps = 12/121 (9%)
Query: 1 MNLAEFLTEPPPD--SDSENYEVL--LQNWIKANKVCRSTILSTLSNELYDVYSQHKFAY 56
+NLA FLTE P D + +V+ + W + +CR+ +++ L++ Y+VYS K
Sbjct: 63 LNLARFLTEDAPKLKEDEHDIQVISAIDAWKHXDFLCRNYVMNGLADSXYNVYSDKKTTK 122
Query: 57 EIWAQLRKKYIIEDAGAQNF--------KMAEDKEVTSQIHGFHMLINDLKNENIILPES 108
E+W L +KY ED GA+ F KM + K V SQ+ ++++++ E ++L E+
Sbjct: 123 ELWESLDRKYKTEDVGAKKFVVGRFLDYKMVDSKTVVSQVQELQVILHEIHAEGMMLSET 182
Query: 109 F 109
F
Sbjct: 183 F 183
>gi|158828138|gb|ABW81017.1| gag-pol polymerase [Arabidopsis lyrata subsp. lyrata]
Length = 1034
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 82/178 (46%), Gaps = 23/178 (12%)
Query: 26 WIKANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQ----NFKMAED 81
W + +CR IL+ +S+ L+DVY + A E+W L KY+ EDA +Q N M E
Sbjct: 40 WENDDYICRGHILNGMSDSLFDVYQNVESAKELWDALESKYMAEDASSQFAQHNMNMDES 99
Query: 82 KEVTSQIH-------GFHMLINDLKNE-NIILPESFMTIDQLEKAKEI---------TSK 124
V+ I GF ++ K E +++ S + I++ + +E TS
Sbjct: 100 ISVSCIIDKLPPSWKGFRRMLKHKKEELSLVQLGSHLRIEESLRVQEGGKPKDKEAETSS 159
Query: 125 ANIVKNEAHPSKNQKPNKKFFKNKKT--TFKKKKGNCYVCGKPGHFANKCRYRKGDHK 180
N++K K K+ F N + K+ K C++C KPGHF CR K +K
Sbjct: 160 INMMKESGSSKMKNKGKKRPFTNNTNDGSNKRFKSVCWICNKPGHFKRDCRAAKDKNK 217
>gi|9309363|dbj|BAB03249.1| polyprotein [Oryza sativa]
Length = 1268
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 90/214 (42%), Gaps = 60/214 (28%)
Query: 34 RSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQ--------NFKMAEDKEVT 85
R ++S L++ + DVY ++W L K+ + DAG++ ++KM +D+ V
Sbjct: 32 RGALISVLADNIVDVYMHMPSGKDMWDALEAKFGVSDAGSELYVMEQFYDYKMVDDRSVV 91
Query: 86 SQIHGFHMLINDLKNENIILPESF-----------------------------------M 110
Q H ML +L+N N LP+ F +
Sbjct: 92 EQAHEIQMLAKELENNNCELPDKFVAGGIIAKLPPSWSDFATSLKHKRQEFSVLDLIGSL 151
Query: 111 TIDQLEKAKEITSK-------ANIV--KNEAHPSKNQKPNKKFFKNKKTTFKKKK----- 156
+++ +AK++ K AN+V KN N+K T FKKK
Sbjct: 152 GVEEKARAKDVRGKKVEGGSSANMVQKKNPHASHNNKKVKPDVKPKAATNFKKKSKGKAN 211
Query: 157 GNCYVCGKPGHFANKCRYRKGDHKPPKANLVDGE 190
G+C+VCGK GH+A C RK D K AN++ E
Sbjct: 212 GDCFVCGKSGHWAKDCPERK-DRK--SANMIISE 242
>gi|3047066|gb|AAC13580.1| contains similarity to retrovirus-related POL polyproteins
[Arabidopsis thaliana]
gi|8843879|dbj|BAA97405.1| unnamed protein product [Arabidopsis thaliana]
Length = 579
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 67/268 (25%), Positives = 111/268 (41%), Gaps = 70/268 (26%)
Query: 1 MNLAEFLTEPPP---DSDSENYEVL-LQNWIKANKVCRSTILSTLSNELYDVYSQHKFAY 56
+N+ +LTE PP + Y V + W + + C+ IL+ L N+L+D+Y++ K +
Sbjct: 71 INMERYLTEDPPIVPQGTTYVYTVGGMDTWAQGDYCCKGLILNRLVNDLFDLYNKAKSSK 130
Query: 57 EIWAQLRKKYIIEDAGAQ--------NFKMAEDKEVTSQIHGFHMLINDLKNENIILPES 108
+W L KY +++G Q NFKM + K + Q+ + +++ E + +
Sbjct: 131 TLWLTLENKYKTDESGMQRFSTAKFLNFKMVDSKPIMEQVEALQRISQEIELEGMSICNV 190
Query: 109 F--------------------------MTIDQLEKAKEITSKAN------IVKNEAH--- 133
F MT D L + + + N +N+ H
Sbjct: 191 FKTNCLIEKLPPGWLDFKNYLNFKRKAMTFDDL--VRRLMIEGNNYGAHAGAQNQGHDVN 248
Query: 134 -----------------PSKNQKPNKKFFKNKKTTFKKKKGNCYVCGKPGHFANKCRYRK 176
P KN K + K +K KG C+ CGK GH + C+ +
Sbjct: 249 VAEHKAKLKGKGKGFSIPQKNLKVSSTTNFKKSNPERKFKGKCHHCGKIGHKGDVCKSKA 308
Query: 177 GDHKPPKANLVDGEDIIVAVVVTQENMV 204
D K +ANL + ED++ VVT+ NMV
Sbjct: 309 KDVK-SQANLTE-EDMV--AVVTECNMV 332
>gi|147863092|emb|CAN82978.1| hypothetical protein VITISV_023328 [Vitis vinifera]
Length = 474
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 69/129 (53%), Gaps = 12/129 (9%)
Query: 1 MNLAEFLTEPPP--DSDSENYE--VLLQNWIKANKVCRSTILSTLSNELYDVYSQHKFAY 56
+NLA FL E P + N E + W ++ +CR+ +L+ L N LY+VY K A
Sbjct: 40 LNLARFLHEECPILEEGETNKEKVAAVDAWKHSDFLCRNYVLNGLDNTLYNVYCSLKTAE 99
Query: 57 EIWAQLRKKYIIEDAGAQ--------NFKMAEDKEVTSQIHGFHMLINDLKNENIILPES 108
E+W L KKY EDAG + +FKM + K V SQ+ ++++++ +E + L +S
Sbjct: 100 ELWDSLDKKYKTEDAGMKKFIVGKFLDFKMIDSKTVRSQVQELQVILHEIHSEGMSLNDS 159
Query: 109 FMTIDQLEK 117
F +EK
Sbjct: 160 FQVAAVIEK 168
>gi|147835748|emb|CAN68532.1| hypothetical protein VITISV_032270 [Vitis vinifera]
Length = 572
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 53/81 (65%), Gaps = 10/81 (12%)
Query: 62 LRKKYIIEDAGAQN--------FKMAEDKEVTSQIHGFHMLINDLKNENIILPESFMTID 113
+ KKYI+ED GAQ F+M EDK+V+SQIH +H+LINDL E+I LPE F+
Sbjct: 1 MNKKYILEDVGAQKYVIRNFKIFQMTEDKDVSSQIHDYHLLINDLAIEDIKLPEPFVAAQ 60
Query: 114 QL--EKAKEITSKANIVKNEA 132
++ K+ SKAN+V+ EA
Sbjct: 61 CFHRKRTKKSNSKANLVEAEA 81
>gi|147815925|emb|CAN77149.1| hypothetical protein VITISV_019364 [Vitis vinifera]
Length = 1544
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 104/248 (41%), Gaps = 61/248 (24%)
Query: 1 MNLAEFLTEPPP----DSDSENYEVLLQNWIKANKVCRSTILSTLSNELYDVYSQHKFAY 56
+NLA+ L E P + ++ W ++ +C++ IL+ L N +Y+VYSQ K
Sbjct: 8 LNLAKVLHEDAPTLKEGETDKQIVAAVEAWKHSDFLCKNYILNGLDNTMYNVYSQVKTTK 67
Query: 57 EIWAQLRKKYIIEDAGAQNF--------KMAEDKEVTSQIHGFHMLINDLKNENIILPES 108
++W L KKY ED G + F KM + K VTSQ+ +++++L E + L ES
Sbjct: 68 KLWESLEKKYKAEDVGMKKFIVGKFLDYKMVDSKTVTSQVQELQIILHELHAEKMELSES 127
Query: 109 FMTIDQLEKA---------------KEITSKANIVK-----------------------N 130
F +EK KE+ + IV+ N
Sbjct: 128 FQVAAIVEKLPPSWKDFKNYLKHKHKEMGLEDLIVRLKIEEDNHVFEKKVGKHPMESKAN 187
Query: 131 EAHPSKNQKPNKKFF----KNKKTTFKKKKGNCYVCGK--PGHFANKCRYRKGD--HKPP 182
P N+K +K F K +KK CY+C K GH A C ++ + H P
Sbjct: 188 LVEPKANKK--RKHFGEGPSQGKNKYKKFARKCYICNKQVQGHSAKDCHLKEQNVLHVPD 245
Query: 183 KA-NLVDG 189
NLV G
Sbjct: 246 IGKNLVSG 253
Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 48/223 (21%), Positives = 87/223 (39%), Gaps = 55/223 (24%)
Query: 3 LAEFLTEPPPDSDSENYEVLLQNWIKANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQL 62
L+E E P + +++ Q W+KA+++ R IL+++SN L + + AY+I L
Sbjct: 362 LSEVCLEKPGEGATQDQIKAHQKWVKADEMARCYILASMSNVLQHQHQKMDTAYDILENL 421
Query: 63 RKKYIIEDAGAQ--------NFKMAEDKEVTSQIHGFHMLINDL-----------KNENI 103
++ + + + A+ KM E +V + + L+ND+ + E +
Sbjct: 422 KEMFGDQTSAARQNTLREILTSKMEEGTQVRTHVLKMMSLLNDMEVLGAEVDKATQIEMV 481
Query: 104 I--LPESF-------------MTIDQLEKAKEITSKANIVKNEAHP-------------- 134
+ LP SF T+ +L E+ + I+K A P
Sbjct: 482 LNTLPPSFQQFRLNYNMNKMDFTLSKL--LNELVAAQTIIKQGAAPVVLNIERVFSSVQK 539
Query: 135 -----SKNQKPNKKFFKNKKTTFKKKKGNCYVCGKPGHFANKC 172
+ N KK KG C+ C +P H+ +C
Sbjct: 540 KGKKKKNVKPNNNGAANGVNGVVKKPKGKCFHCKQPSHWKLQC 582
>gi|19881576|gb|AAM00977.1|AC090482_6 Putative retroelement [Oryza sativa Japonica Group]
gi|31431306|gb|AAP53108.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 493
Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 65/240 (27%), Positives = 103/240 (42%), Gaps = 66/240 (27%)
Query: 8 TEPPPDSDSENYEVLLQNWIKANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYI 67
+EPP S+ E + ++ + + ++S L++ + DVY ++W L K+
Sbjct: 193 SEPPLSSEEE------AKFEASDCLFQGALISVLADNIVDVYMHMPSGKDMWDALEAKFG 246
Query: 68 IEDAGAQ--------NFKMAEDKEVTSQIHGFHMLINDLKNENIILPESF---------- 109
+ DAG++ ++KM +D+ V Q H ML +L+N N LP+ F
Sbjct: 247 VSDAGSELYVMEQFYDYKMVDDRSVVEQAHEIQMLAKELENNNCELPDKFVAGGIIAKLP 306
Query: 110 -------------------------MTIDQLEKAKEITSK-------ANIV-KNEAHPSK 136
+ +++ +AK++ K AN+V K H S
Sbjct: 307 PSWSDFATSLKHKRQEFSVSDLIGSLGVEEKARAKDVRGKKVKGGSSANMVQKKNPHASH 366
Query: 137 NQKPNKKFFKNKKTT------FKKKKGNCYVCGKPGHFANKCRYRKGDHKPPKANLVDGE 190
N K K + K K T K KG+C+VCGK GH+A C RK D K AN+V E
Sbjct: 367 NNKKVKLYVKPKAATNFKKKGKGKAKGDCFVCGKSGHWAKDCPERK-DRK--SANMVISE 423
>gi|147779979|emb|CAN77804.1| hypothetical protein VITISV_003036 [Vitis vinifera]
Length = 220
Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 70/130 (53%), Gaps = 14/130 (10%)
Query: 1 MNLAEFLTEPPP-----DSDSENYEVLLQNWIKANKVCRSTILSTLSNELYDVYSQHKFA 55
+NLA+ L + P ++D + + + W ++ +C++ IL+ L N +Y+VYSQ K
Sbjct: 8 LNLAKVLHKDAPTLKEGETDKQIVAAI-EAWKHSDFLCKNYILNGLDNMMYNVYSQVKTT 66
Query: 56 YEIWAQLRKKYIIEDAGAQNF--------KMAEDKEVTSQIHGFHMLINDLKNENIILPE 107
E+W L KKY ED G + F KM + K VTSQ+ +++++L E + L E
Sbjct: 67 KELWESLEKKYKTEDVGMKKFIVGRFLDYKMVDSKTVTSQVQELQIILHELHAEKMELSE 126
Query: 108 SFMTIDQLEK 117
SF +EK
Sbjct: 127 SFQVAAIVEK 136
>gi|37718821|gb|AAR01692.1| putative gag and pol polyprotein [Oryza sativa Japonica Group]
Length = 1427
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 93/214 (43%), Gaps = 60/214 (28%)
Query: 34 RSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQ--------NFKMAEDKEVT 85
R ++S L++ + DVY Q ++W L K+ + DAG++ ++KM +D+ +
Sbjct: 539 RGALISVLADNIVDVYMQMPSRKDMWDALEAKFGVSDAGSELYAMEQFYDYKMVDDRSIV 598
Query: 86 SQIHGFHMLINDLKNENIILPESFM--------------------------TIDQL---- 115
Q H ML +L+N N LP+ F+ ++ L
Sbjct: 599 EQAHEIQMLAKELENNNCELPDKFVADGIIAKLLPSWSDFATSLKHKRQEFSVSDLIGSL 658
Query: 116 ---EKAK---------EITSKANIV-KNEAHPSKNQKPNKKFFKNKKTT------FKKKK 156
EKA+ E S AN++ K H S N K K K K TT K K
Sbjct: 659 GVEEKARAKDNRGKKVEGGSSANMLQKKNPHASHNNKKVKADVKPKATTNFKKKGKGKAK 718
Query: 157 GNCYVCGKPGHFANKCRYRKGDHKPPKANLVDGE 190
G+C+VCGK GH+A C RK D K AN+V E
Sbjct: 719 GDCFVCGKSGHWAKDCPERK-DRK--SANMVISE 749
>gi|31126695|gb|AAP44618.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1494
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 93/214 (43%), Gaps = 60/214 (28%)
Query: 34 RSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQ--------NFKMAEDKEVT 85
R ++S L++ + DVY Q ++W L K+ + DAG++ ++KM +D+ +
Sbjct: 539 RGALISVLADNIVDVYMQMPSRKDMWDALEAKFGVSDAGSELYAMEQFYDYKMVDDRSIV 598
Query: 86 SQIHGFHMLINDLKNENIILPESFM--------------------------TIDQL---- 115
Q H ML +L+N N LP+ F+ ++ L
Sbjct: 599 EQAHEIQMLAKELENNNCELPDKFVADGIIAKLLPSWSDFATSLKHKRQEFSVSDLIGSL 658
Query: 116 ---EKAK---------EITSKANIV-KNEAHPSKNQKPNKKFFKNKKTT------FKKKK 156
EKA+ E S AN++ K H S N K K K K TT K K
Sbjct: 659 GVEEKARAKDNRGKKVEGGSSANMLQKKNPHASHNNKKVKADVKPKATTNFKKKGKGKAK 718
Query: 157 GNCYVCGKPGHFANKCRYRKGDHKPPKANLVDGE 190
G+C+VCGK GH+A C RK D K AN+V E
Sbjct: 719 GDCFVCGKSGHWAKDCPERK-DRK--SANMVISE 749
>gi|108708842|gb|ABF96637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1543
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 93/214 (43%), Gaps = 60/214 (28%)
Query: 34 RSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQ--------NFKMAEDKEVT 85
R ++S L++ + DVY Q ++W L K+ + DAG++ ++KM +D+ +
Sbjct: 562 RGALISVLADNIVDVYMQMPSRKDMWDALEAKFGVSDAGSELYAMEQFYDYKMVDDRSIV 621
Query: 86 SQIHGFHMLINDLKNENIILPESFM--------------------------TIDQL---- 115
Q H ML +L+N N LP+ F+ ++ L
Sbjct: 622 EQAHEIQMLAKELENNNCELPDKFVADGIIAKLLPSWSDFATSLKHKRQEFSVSDLIGSL 681
Query: 116 ---EKAK---------EITSKANIV-KNEAHPSKNQKPNKKFFKNKKTT------FKKKK 156
EKA+ E S AN++ K H S N K K K K TT K K
Sbjct: 682 GVEEKARAKDNRGKKVEGGSSANMLQKKNPHASHNNKKVKADVKPKATTNFKKKGKGKAK 741
Query: 157 GNCYVCGKPGHFANKCRYRKGDHKPPKANLVDGE 190
G+C+VCGK GH+A C RK D K AN+V E
Sbjct: 742 GDCFVCGKSGHWAKDCPERK-DRK--SANMVISE 772
>gi|77553063|gb|ABA95859.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 503
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 88/207 (42%), Gaps = 57/207 (27%)
Query: 34 RSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQ--------NFKMAEDKEVT 85
R ++S L++ + DVY ++W L K+ + D G++ ++KM +D+ V
Sbjct: 104 RGALISVLADNIVDVYMHMPSGKDMWDALEAKFGVFDTGSELYVMEQFYDYKMVDDRSVV 163
Query: 86 SQIHGFHMLINDLKNENIILPESF-----------------------------------M 110
Q H ML +L+N N LP+ F +
Sbjct: 164 EQAHEIQMLAKELENNNCELPDKFVAGGIIAKLPPSWSDFATSLKHKRQEFSVIDLIGSL 223
Query: 111 TIDQLEKAKEITSKANIVKNEAHPSKNQKPNKKFFKNKKTT------FKKKKGNCYVCGK 164
+++ +AK+I K K H S N K K K K TT K KG+C+VCGK
Sbjct: 224 GVEEKARAKDIWGKK---KKNPHASHNNKKVKHDVKPKATTNFKKKGKGKAKGDCFVCGK 280
Query: 165 PGHFANKCRYRKGDHKPPK-ANLVDGE 190
PGH+A C +HK K AN+V E
Sbjct: 281 PGHWAKDCP----EHKDRKSANMVISE 303
>gi|77554076|gb|ABA96872.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 732
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 87/204 (42%), Gaps = 56/204 (27%)
Query: 29 ANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQ--------NFKMAE 80
+N + R ++S L++ + DVY ++W L K+ + DAG++ ++KM +
Sbjct: 27 SNCLFRGALISVLADNIVDVYIHMPSGKDMWDALEAKFGVSDAGSELYVMEQFYDYKMVD 86
Query: 81 DKEVTSQIHGFHMLINDLKNENIILPESFM-------------------------TIDQL 115
D+ V Q H ML +L+N N LP+ F+ ++ L
Sbjct: 87 DRSVVEQAHEIQMLAKELENNNCELPDKFVAGGIIAKLPPSWSDFATSLKHKQEFSVSDL 146
Query: 116 -------EKAK---------EITSKANIV-KNEAHPSKNQKPNKKFFKNKKTT------F 152
EKA+ E S AN+V K H S N K K K K TT
Sbjct: 147 IGSLGVEEKARAKDNRGKKVEGGSSANMVQKKNPHASHNNKKVKLDGKPKATTNFKKKGK 206
Query: 153 KKKKGNCYVCGKPGHFANKCRYRK 176
K K +C+VCGK GH+A C RK
Sbjct: 207 GKAKEDCFVCGKSGHWAKDCPERK 230
>gi|147826517|emb|CAN64075.1| hypothetical protein VITISV_017997 [Vitis vinifera]
Length = 635
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 63/101 (62%), Gaps = 10/101 (9%)
Query: 113 DQLEKAKEITSKANIVKNEAHPSKNQKPNKKFFKNK-------KTTFKKKKGNCYVCGKP 165
D +EKAKE++SKAN+V+ ++ P KN + K+ + K + + KK GNC+VCGK
Sbjct: 20 DNIEKAKELSSKANVVEEKSKP-KNNRSRKQNSRTKPNASNKVQNSTIKKXGNCFVCGKS 78
Query: 166 GHFANKCRYRKGDHKP-PKANLVDGEDIIVAVVVTQENMVA 205
GH A +CR+RK K KANL + + +I V+ ++ +MV
Sbjct: 79 GHHAAQCRHRKRTKKSNSKANLAETK-VITVVISSEVSMVT 118
>gi|50838985|gb|AAT81746.1| integrase core domain containing protein [Oryza sativa Japonica
Group]
gi|108708962|gb|ABF96757.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1232
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 89/211 (42%), Gaps = 60/211 (28%)
Query: 34 RSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQ--------NFKMAEDKEVT 85
R ++S L++ + DVY ++W L K+ + DAG++ ++KM +D+ V
Sbjct: 148 RGALISILADNIVDVYMHMPSGKDMWDALEAKFGVSDAGSELYVMEQFYDYKMVDDRSVV 207
Query: 86 SQIHGFHMLINDLKNENIILPESFM--------------------------TIDQL---- 115
Q H ML +L+N N L + F+ ++ L
Sbjct: 208 EQAHEIQMLAKELENNNCELSDKFVAGGIIAKLPPSWSDFATSLKHKRQEFSVSDLIGSL 267
Query: 116 ---EKAK---------EITSKANIV-KNEAHPSKNQKPNKKFFKNKKTT------FKKKK 156
EKA+ E S AN+V K H S N K K K K TT K
Sbjct: 268 GVEEKARAKDNRHKKVEGGSSANMVQKKNPHASHNNKKVKPDGKPKATTNFKKKGKGKAN 327
Query: 157 GNCYVCGKPGHFANKCRYRKGDHKPPKANLV 187
G+C+VCGK GH+A C RK D K AN+V
Sbjct: 328 GDCFVCGKSGHWAKDCPKRK-DRK--SANMV 355
>gi|108707163|gb|ABF94958.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1104
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 91/194 (46%), Gaps = 35/194 (18%)
Query: 29 ANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQ--------NFKMAE 80
++ + R ++S L++ + DVY ++W L K+ + DAG++ ++KM +
Sbjct: 212 SDYLFRGALISVLTDNIVDVYMHMPSGKDMWDALEAKFGVSDAGSELYVIEQFYDYKMVD 271
Query: 81 DKEVTSQIHGFHMLINDLKNENIILPESFMTIDQLEKA--------------KEITSKAN 126
D+ V Q H ML +L+N N LP+ F+ + K ++ S ++
Sbjct: 272 DRSVVEQTHEIQMLAKELENNNCELPDKFVAGGIIAKLPPSWSDFATFLKHKRQEFSVSD 331
Query: 127 IV----KNEAHPSKNQKPNKKFFKNKKTT------FKKKKGNCYVCGKPGHFANKCRYRK 176
++ K H S+N K K K K T K KG+C+VCGK GH+A C RK
Sbjct: 332 LIDSLGKKNPHASRNNKKVKPDVKPKAATNFKKKGKGKAKGDCFVCGKSGHWAKDCPERK 391
Query: 177 GDHKPPKANLVDGE 190
D K AN+V E
Sbjct: 392 -DRK--SANMVISE 402
>gi|29027729|dbj|BAC65862.1| hypothetical polyprotein [Oryza sativa Japonica Group]
Length = 1268
Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 91/216 (42%), Gaps = 61/216 (28%)
Query: 34 RSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQ--------NFKMAEDKEVT 85
R ++S L++ + DVY ++W L K+ + DAG++ ++KM +D+ V
Sbjct: 32 RGALISVLADNIVDVYMHIPSGKDMWDALEAKFGVSDAGSELYVMEQFYDYKMVDDRSVV 91
Query: 86 SQIHGFHMLINDLKNENIILPESF-----------------------------------M 110
Q H ML+ +L+N + LP+ F +
Sbjct: 92 EQAHEIQMLVKELENNHCELPDKFVAGGIIAKLPPSWSDFATSLKHKRQEFSVTDLIGSL 151
Query: 111 TIDQLEKAK-------EITSKANIV-KNEAHPSKNQKPNKKFFKNKKTT-------FKKK 155
I++ +AK E S AN+V K H S N K K T K
Sbjct: 152 GIEEKARAKDNRGKKIEGGSSANLVQKKNPHASHNNNKKVKPDVKPKATTNFKKKGKGKA 211
Query: 156 KGNCYVCGKPGHFANKCRYRKGDHKPPKANLVDGED 191
KG+C+VCGKPGH+A C RK D K AN+V ED
Sbjct: 212 KGDCFVCGKPGHWAKDCPERK-DKK--SANMVISED 244
>gi|62734435|gb|AAX96544.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group]
gi|77550433|gb|ABA93230.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1321
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 91/203 (44%), Gaps = 49/203 (24%)
Query: 34 RSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQ--------NFKMAEDKEVT 85
R ++S L++ + DVY ++W L K+ + DAG++ ++KM +D+ V
Sbjct: 218 RGALISVLADNIVDVYMHMPSGKDMWDALEAKFGVSDAGSELYVMEQFYDYKMVDDRSVV 277
Query: 86 SQIHGFHMLINDLKNENIILPESF------------------------MTIDQLEKAKEI 121
Q H ML +L+N N LP+ F + +++ +AK++
Sbjct: 278 EQAHEIQMLAKELENNNRELPDKFVAGGIIAKLKHKRQEFSVPDLIGSLGVEEKARAKDV 337
Query: 122 TSK-------ANIV-KNEAHPSKNQKPNKKFFKNKKTT------FKKKKGNCYVCGKPGH 167
K AN+V K H S N K K K K T K KG+C+VCGK GH
Sbjct: 338 RGKKVEGGSSANMVQKKNPHASHNNKKVKPDVKPKAATNFKKKGKGKAKGDCFVCGKSGH 397
Query: 168 FANKCRYRKGDHKPPKANLVDGE 190
+A C RK D K AN++ E
Sbjct: 398 WAKDCPKRK-DRK--SANMIISE 417
>gi|47777371|gb|AAT38005.1| putative polyprotein [Oryza sativa Japonica Group]
gi|49328115|gb|AAT58813.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 1198
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 74/172 (43%), Gaps = 28/172 (16%)
Query: 28 KANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAG--------AQNFKMA 79
+A + ILS L + L +VY A E+W L K+ DA ++KMA
Sbjct: 56 EATTLFMGCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMA 115
Query: 80 EDKEVTSQIHGFHMLINDLKNENIILPESFMTIDQLEKAKEITSKANIVKNEAHPSKNQK 139
++ V Q H + +L+ +L D K S AN+V H ++N+
Sbjct: 116 NNRSVVEQAHEIQTIAKELE----LLKRKHWEKDAASKGDGGQSTANVV----HKAQNKS 167
Query: 140 PNKKFFKNKKTTFK----------KKKGNCYVCGKPGHFANKCRYRKGDHKP 181
K +K ++TT + K C+VCG+PGH A KC RKG P
Sbjct: 168 KGK--YKAQQTTNFKKNKNNNNPNQDKRTCFVCGQPGHLARKCPQRKGMKAP 217
>gi|356495087|ref|XP_003516412.1| PREDICTED: solute carrier family 40 member 1-like [Glycine max]
Length = 641
Score = 63.9 bits (154), Expect = 4e-08, Method: Composition-based stats.
Identities = 35/101 (34%), Positives = 58/101 (57%), Gaps = 11/101 (10%)
Query: 26 WIKANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQ--------NFK 77
W + + +C++ IL+ L+++LYD YS +K A +W L KKY E AG + ++
Sbjct: 538 WNENDYLCKNFILNGLADDLYDYYSPYKSAKLVWLILEKKYDTEKAGTKKYAVSRYLKYQ 597
Query: 78 MAEDKEVTSQIHGFHMLINDLKNENIILPESF---MTIDQL 115
M +DK V SQ H + +D+ +E++ L E F + ID+L
Sbjct: 598 MIDDKSVQSQSHEIQKIAHDIISEDMALDEQFRVAIIIDKL 638
>gi|20303592|gb|AAM19019.1|AC084748_9 putative polyprotein [Oryza sativa Japonica Group]
Length = 1394
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 90/214 (42%), Gaps = 60/214 (28%)
Query: 34 RSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQ--------NFKMAEDKEVT 85
R ++S L++ + DVY ++W L K+ I DAG++ ++KM +D+ V
Sbjct: 158 RGALISVLADNIVDVYMHMPSGKDMWDALEAKFGISDAGSELYVMEQFYDYKMVDDRSVV 217
Query: 86 SQIHGFHMLINDLKNENIILPESFMTIDQL------------------------------ 115
Q H ML +L+N N LP+ F+ D +
Sbjct: 218 EQAHEIQMLAKELENNNCELPDKFVAGDIIAKLPPSWSDFATSLKHKRQEFSVPDLIGSL 277
Query: 116 ---EKAK---------EITSKANIV-KNEAHPSKNQKPNKKFFKNKKTT------FKKKK 156
EKA+ E S AN+V K H S N K K K K T K K
Sbjct: 278 GVEEKARAKDVRGKKVEGGSSANMVQKKNPHASHNNKKVKPDVKPKAATNFKKKSKGKAK 337
Query: 157 GNCYVCGKPGHFANKCRYRKGDHKPPKANLVDGE 190
G+C+VCGK GH+A C RK D K AN++ E
Sbjct: 338 GDCFVCGKSGHWAKDCPERK-DRK--SANMIISE 368
>gi|108711361|gb|ABF99156.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1413
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 90/214 (42%), Gaps = 60/214 (28%)
Query: 34 RSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQ--------NFKMAEDKEVT 85
R ++S L++ + DVY ++W L K+ I DAG++ ++KM +D+ V
Sbjct: 177 RGALISVLADNIVDVYMHMPSGKDMWDALEAKFGISDAGSELYVMEQFYDYKMVDDRSVV 236
Query: 86 SQIHGFHMLINDLKNENIILPESFMTIDQL------------------------------ 115
Q H ML +L+N N LP+ F+ D +
Sbjct: 237 EQAHEIQMLAKELENNNCELPDKFVAGDIIAKLPPSWSDFATSLKHKRQEFSVPDLIGSL 296
Query: 116 ---EKAK---------EITSKANIV-KNEAHPSKNQKPNKKFFKNKKTT------FKKKK 156
EKA+ E S AN+V K H S N K K K K T K K
Sbjct: 297 GVEEKARAKDVRGKKVEGGSSANMVQKKNPHASHNNKKVKPDVKPKAATNFKKKSKGKAK 356
Query: 157 GNCYVCGKPGHFANKCRYRKGDHKPPKANLVDGE 190
G+C+VCGK GH+A C RK D K AN++ E
Sbjct: 357 GDCFVCGKSGHWAKDCPERK-DRK--SANMIISE 387
>gi|31432391|gb|AAP54028.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1361
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 67/242 (27%), Positives = 105/242 (43%), Gaps = 70/242 (28%)
Query: 8 TEPP--PDSDSENYEVLLQNWIKANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKK 65
+EPP P+ D++ +E ++ + R ++S L++ + DVY ++W L K
Sbjct: 179 SEPPLSPEEDAK-FEA-------SDCLFRGALISVLADNIVDVYMHMPSGKDMWDALEAK 230
Query: 66 YIIEDAGAQ--------NFKMAEDKEVTSQIHGFHMLINDLKNENIILPESF-------- 109
+ + DAG++ ++KM +D+ V Q H ML +L+N N LP+ F
Sbjct: 231 FGVSDAGSELYVMEQFYDYKMVDDRSVVEQAHEIQMLAKELENNNCELPDKFVAGGIIAK 290
Query: 110 ---------------------------MTIDQLEKAKEITSK-------ANIV-KNEAHP 134
+ +++ +AK+I K AN+V K H
Sbjct: 291 LPPSWSDFATSLKHKRQEFSVPDLIGSLGVEEKARAKDIRGKKVEGGSSANMVQKKNPHA 350
Query: 135 SKNQKPNKKFFKNKKTT------FKKKKGNCYVCGKPGHFANKCRYRKGDHKPPKANLVD 188
S N K K K K T K KG+C+VCGK GH+A C RK D K AN++
Sbjct: 351 SHNNKKVKPDVKPKAATNFKKKGKGKAKGDCFVCGKSGHWAKDCPERK-DRK--SANMII 407
Query: 189 GE 190
E
Sbjct: 408 SE 409
>gi|77551574|gb|ABA94371.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1239
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 84/201 (41%), Gaps = 58/201 (28%)
Query: 34 RSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQ--------NFKMAEDKEVT 85
R ++S L++ + DVY F ++W L K+ + DAG++ ++KM +D+ V
Sbjct: 147 RGALISVLADNIVDVYMHMPFGKDMWDALEAKFGVSDAGSELYVMEQFYDYKMVDDRSVV 206
Query: 86 SQIHGFHMLINDLKNENIILPESFM--------------------------TIDQL---- 115
Q H ML +L+N N LP+ F+ ++ L
Sbjct: 207 EQAHEIQMLTKELENNNCELPDKFVAGGIIAKLPPSWSDFATSLKHKRQEFSVSDLIGSL 266
Query: 116 ---EKAK---------EITSKANIVK---NEAHPSKNQKPNKKFFKNKKTTF-----KKK 155
EKA+ E S AN+V+ A + N+K T F K
Sbjct: 267 GVEEKARAKDNWGKKVEGGSSANMVQKKNRHASHNNNKKVKPDVKPKVATNFKKKGKGKA 326
Query: 156 KGNCYVCGKPGHFANKCRYRK 176
KG+C+VCGK GH+A C RK
Sbjct: 327 KGDCFVCGKSGHWAKDCPERK 347
>gi|113205447|gb|ABI34399.1| Polyprotein, putative [Solanum demissum]
Length = 564
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 70/131 (53%), Gaps = 13/131 (9%)
Query: 10 PPPDSDSENYE--VLLQNWIKANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYI 67
P P ++ + E ++++ W +A+ +C+ IL+ L ++LY+VYS + E+W L KKY
Sbjct: 170 PMPVAEMPDREKFMIIKAWKQADFLCKGYILNVLEHDLYNVYSAMTTSKELWDALEKKYK 229
Query: 68 IEDAGAQNF--------KMAEDKEVTSQIHGFHMLINDLKNENIILPESFMTIDQLEKAK 119
EDA + F KM + K V SQ+ + +DL +++++ E+F +EK
Sbjct: 230 TEDACLKKFVVAKFLDYKMLDSKTVGSQVQELQLSFHDLIADDMVVNEAFQMAAMIEK-- 287
Query: 120 EITSKANIVKN 130
+ S N KN
Sbjct: 288 -LPSSCNDFKN 297
>gi|38344416|emb|CAE02382.2| OSJNBb0080H08.8 [Oryza sativa Japonica Group]
Length = 1183
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 91/216 (42%), Gaps = 62/216 (28%)
Query: 34 RSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQ--------NFKMAEDKEVT 85
R ++S L++ + DVY +W L K+ + DAG++ ++KM +D+ V
Sbjct: 229 RGALISVLADNIVDVYMHMPSGKNMWDALEAKFGVSDAGSELYVMEQFYDYKMVDDRSVV 288
Query: 86 SQIHGFHMLINDLKNENIILPESFMT------------------------------IDQL 115
Q H ML +L+N N LP+ F+ I L
Sbjct: 289 EQAHEIQMLAKELENNNCELPDKFVAGGIIAKFPPSWSDFATSLKHKRQEFSVTDLIGSL 348
Query: 116 ---EKAK---------EITSKANIVKNE----AHPSKNQKPNKKFFKNKKTTF-----KK 154
EKA+ E S AN+V+N+ +H + +K T F K
Sbjct: 349 GVEEKARAKDNRGKNIEGGSSANLVQNKNPHASHNNNKKKVKPDVKPKATTNFKKKGKGK 408
Query: 155 KKGNCYVCGKPGHFANKCRYRKGDHKPPKANLVDGE 190
KG+C+VCGKPGH+A C RK D K AN+V E
Sbjct: 409 AKGDCFVCGKPGHWAKNCPDRK-DKK--SANMVISE 441
>gi|108864385|gb|ABG22485.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1132
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 65/153 (42%), Gaps = 8/153 (5%)
Query: 37 ILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAG--------AQNFKMAEDKEVTSQI 88
ILS L + L +VY A E+W L K+ DA ++KMA+++ V Q
Sbjct: 89 ILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMADNRSVVEQA 148
Query: 89 HGFHMLINDLKNENIILPESFMTIDQLEKAKEITSKANIVKNEAHPSKNQKPNKKFFKNK 148
H + +L+ +LP+ F+ + K + + Q N K K
Sbjct: 149 HEIQTMAKELELLKCVLPDKFVVGCIIAKLPPSWRSFGPEQEKGKYKAQQTTNFKKQKKN 208
Query: 149 KTTFKKKKGNCYVCGKPGHFANKCRYRKGDHKP 181
+ + C+VCG+PGH A KC RKG P
Sbjct: 209 NNNPNQDERTCFVCGQPGHLARKCPQRKGMKTP 241
>gi|22267593|gb|AAM94928.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 619
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 91/214 (42%), Gaps = 60/214 (28%)
Query: 34 RSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQ--------NFKMAEDKEVT 85
R ++S L++ + DVY ++W L K+ + DAG++ ++KM +D+ V
Sbjct: 32 RGALISVLADNIVDVYMHMPSGKDMWDALEAKFGVSDAGSELYVMEQFYDYKMVDDRSVV 91
Query: 86 SQIHGFHMLINDLKNENIILPESF-----------------------------------M 110
Q H ML +L+N N LP+ F +
Sbjct: 92 EQAHEIQMLAKELENNNCELPDKFVAGGIIAKLPPSWSDFATSLKHNRQEFSVPDLIGSL 151
Query: 111 TIDQLEKAKEITSK-------ANIV-KNEAHPSKNQKPNKKFFKNKKTT------FKKKK 156
+++ +AK++ K AN+V K H S N K K K K T K K
Sbjct: 152 GVEEKARAKDVQGKKVEGGSSANMVQKKNPHASHNNKKVKPDVKPKAATNFKKKSKGKAK 211
Query: 157 GNCYVCGKPGHFANKCRYRKGDHKPPKANLVDGE 190
G+C+VCGK GH+A C RK D K AN++ E
Sbjct: 212 GDCFVCGKSGHWAKDCPERK-DRK--SANMIISE 242
>gi|38344706|emb|CAE05248.2| OSJNBb0115I09.10 [Oryza sativa Japonica Group]
Length = 1321
Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 91/214 (42%), Gaps = 60/214 (28%)
Query: 34 RSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQ--------NFKMAEDKEVT 85
R ++S L++ + DVY E+W L K+ + DAG++ ++KM +D+ +
Sbjct: 97 RGALISVLADNIVDVYMYMPSGKEMWDALEAKFGVSDAGSELYVMEQFYDYKMVDDRSIV 156
Query: 86 SQIHGFHMLINDLKNENIILPESF-----------------------------------M 110
Q H ML +L+N N LP+ F +
Sbjct: 157 EQAHEIQMLAKELENNNCELPDKFVAGGIIAKLPPSWSDFATSLKHKRQEFSVPDLIGSL 216
Query: 111 TIDQLEKAKEITSK-------ANIV-KNEAHPSKNQKPNKKFFKNKKTT------FKKKK 156
+++ +AK++ K AN+V K H S N K K K K T K K
Sbjct: 217 GVEEKARAKDVRGKKVEGGSSANMVQKKNPHASHNNKKVKPDVKPKAATNFKKKSKGKAK 276
Query: 157 GNCYVCGKPGHFANKCRYRKGDHKPPKANLVDGE 190
G+C+VCGK GH+A C RK D K AN++ E
Sbjct: 277 GDCFVCGKSGHWAKDCPERK-DRK--SANMIISE 307
>gi|22324949|gb|AAM95676.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1138
Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 91/214 (42%), Gaps = 60/214 (28%)
Query: 34 RSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQ--------NFKMAEDKEVT 85
R ++S L++ + DVY ++W L K+ + DAG++ ++KM +D+ V
Sbjct: 32 RGALISVLADNIVDVYMHMPSGKDMWDALEAKFGVSDAGSELYVMEQFYDYKMVDDRSVV 91
Query: 86 SQIHGFHMLINDLKNENIILPESF-----------------------------------M 110
Q H ML +L+N N LP+ F +
Sbjct: 92 EQAHEIQMLAKELENNNCELPDKFVAGGIIAKLPPSWSDFATSLKHNRQEFSVPDLIGSL 151
Query: 111 TIDQLEKAKEITSK-------ANIV-KNEAHPSKNQKPNKKFFKNKKTT------FKKKK 156
+++ +AK++ K AN+V K H S N K K K K T K K
Sbjct: 152 GVEEKARAKDVQGKKVEGGSSANMVQKKNPHASHNNKKVKPDVKPKAATNFKKKSKGKAK 211
Query: 157 GNCYVCGKPGHFANKCRYRKGDHKPPKANLVDGE 190
G+C+VCGK GH+A C RK D K AN++ E
Sbjct: 212 GDCFVCGKSGHWAKDCPERK-DRK--SANMIISE 242
>gi|110289378|gb|ABB47865.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1126
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 91/214 (42%), Gaps = 60/214 (28%)
Query: 34 RSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQ--------NFKMAEDKEVT 85
R ++S L++ + DVY ++W L K+ + DAG++ ++KM +D+ V
Sbjct: 32 RGALISVLADNIVDVYMHMPSGKDMWDALEAKFGVSDAGSELYVMEQFYDYKMVDDRSVV 91
Query: 86 SQIHGFHMLINDLKNENIILPESF-----------------------------------M 110
Q H ML +L+N N LP+ F +
Sbjct: 92 EQAHEIQMLAKELENNNCELPDKFVAGGIIAKLPPSWSDFATSLKHNRQEFSVPDLIGSL 151
Query: 111 TIDQLEKAKEITSK-------ANIV-KNEAHPSKNQKPNKKFFKNKKTT------FKKKK 156
+++ +AK++ K AN+V K H S N K K K K T K K
Sbjct: 152 GVEEKARAKDVQGKKVEGGSSANMVQKKNPHASHNNKKVKPDVKPKAATNFKKKSKGKAK 211
Query: 157 GNCYVCGKPGHFANKCRYRKGDHKPPKANLVDGE 190
G+C+VCGK GH+A C RK D K AN++ E
Sbjct: 212 GDCFVCGKSGHWAKDCPERK-DRK--SANMIISE 242
>gi|359491797|ref|XP_003634327.1| PREDICTED: uncharacterized protein LOC100258195 [Vitis vinifera]
Length = 1274
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 49/80 (61%), Gaps = 4/80 (5%)
Query: 1 MNLAEFLTEPPPD--SDSENYEVL--LQNWIKANKVCRSTILSTLSNELYDVYSQHKFAY 56
+NLA FLTE P D N +V+ + W ++ +CR+ +++ L++ LY+VYS K A
Sbjct: 63 LNLARFLTEDAPKLKEDEHNIQVISAIDAWKHSDFLCRNYVMNGLADSLYNVYSDKKTAK 122
Query: 57 EIWAQLRKKYIIEDAGAQNF 76
E+W L +KY ED GA+ F
Sbjct: 123 ELWESLDRKYKTEDVGAKKF 142
>gi|41469360|gb|AAS07202.1| putative integrase [Oryza sativa Japonica Group]
gi|108708916|gb|ABF96711.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1456
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 91/214 (42%), Gaps = 60/214 (28%)
Query: 34 RSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQ--------NFKMAEDKEVT 85
R ++S L++ + DVY ++W L K+ + DAG++ ++KM +D+ V
Sbjct: 220 RGALISVLADNIVDVYMHMPSGKDMWDSLEAKFGVSDAGSELYVMEQFYDYKMVDDRSVV 279
Query: 86 SQIHGFHMLINDLKNENIILPESF-----------------------------------M 110
Q H ML +L+N N LP+ F +
Sbjct: 280 EQAHEIQMLAKELENNNCELPDKFVAGGIIAKLPPSWSDFATSLKHKRQEFSVPDLIGSL 339
Query: 111 TIDQLEKAKEITSK-------ANIV-KNEAHPSKNQKPNKKFFKNKKTT------FKKKK 156
+++ +AK++ K AN+V K H S N K K K K T K K
Sbjct: 340 GVEEKARAKDVRGKKVEGGSSANMVQKKNPHASHNNKKVKPDVKPKAATNFKKKGKGKAK 399
Query: 157 GNCYVCGKPGHFANKCRYRKGDHKPPKANLVDGE 190
G+C+VCGK GH+A C RK D K AN++ E
Sbjct: 400 GDCFVCGKSGHWAKDCPERK-DRK--SANMIISE 430
>gi|18997231|gb|AAL83348.1|AC074282_15 Putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|31429942|gb|AAP51926.1| retrotransposon protein, putative, Ty1-copia subclass, expressed
[Oryza sativa Japonica Group]
Length = 1109
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 83/200 (41%), Gaps = 57/200 (28%)
Query: 34 RSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQ--------NFKMAEDKEVT 85
R ++S L++ + DVY ++W L K+ DAG++ ++KM +D V
Sbjct: 167 RGALISVLADNIVDVYMHMPSGKDMWDALEAKFGFSDAGSELYVMEQFYDYKMVDDCSVV 226
Query: 86 SQIHGFHMLINDLKNENIILPESF-----------------------------------M 110
Q HG ML +L+N N LP+ F +
Sbjct: 227 EQAHGIQMLAKELENNNCELPDKFVAGGIIAKLPPAWSDFATSLKHKRQEFSVSDLIGSL 286
Query: 111 TIDQLEKAKEITSK-------ANIV-KNEAHPSKNQKPNKKFFKNKKTT------FKKKK 156
+++ +AK++ K AN+V K H S N K K K K T K K
Sbjct: 287 GVEEKARAKDVRGKKVEGGSSANMVQKKNPHASHNNKKVKPDVKPKAATNFKKKGKGKAK 346
Query: 157 GNCYVCGKPGHFANKCRYRK 176
G+C+VCGK GH+A C RK
Sbjct: 347 GDCFVCGKSGHWAKDCPERK 366
>gi|68611257|emb|CAE01619.3| OSJNBa0042L16.8 [Oryza sativa Japonica Group]
Length = 1110
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 92/214 (42%), Gaps = 61/214 (28%)
Query: 34 RSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQ--------NFKMAEDKEVT 85
R ++S L++ + DVY ++W L K+ + DAG+ ++KM +D+ V
Sbjct: 159 RGALISVLADNIVDVYMHMPSGKDMWDALEAKFGVSDAGSALYVMEQFYDYKMVDDRSVV 218
Query: 86 SQIHGFHMLINDLKNENIILPESF-----------------------------------M 110
+ H ML +L+N N LP+ F +
Sbjct: 219 -EAHEIQMLAKELENNNCELPDKFVVGGIIAKLPPSWSDFATSLKHKRQEFSVSDFIGSL 277
Query: 111 TIDQLEKAKEITSK-------ANIV-KNEAHPSKNQKPNKKFFKNKKTT------FKKKK 156
+++ +AK++ K AN+V K H S N K K K+K T +K K
Sbjct: 278 GVEEKARAKDVRGKKVEGGSSANMVQKKNPHVSHNNKKVKPDVKSKAATNFKKKGKRKAK 337
Query: 157 GNCYVCGKPGHFANKCRYRKGDHKPPKANLVDGE 190
G+C+VCGK GH+A C RK D K AN+V E
Sbjct: 338 GDCFVCGKSGHWAKDCPERK-DRK--SANMVISE 368
>gi|77556089|gb|ABA98885.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1452
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 91/214 (42%), Gaps = 60/214 (28%)
Query: 34 RSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQ--------NFKMAEDKEVT 85
R ++S L++ + DVY ++W L K+ + DAG++ ++KM +D+ V
Sbjct: 220 RGALISVLADNIVDVYMHMPSGKDMWDALEAKFGVSDAGSELYVMEQFYDYKMVDDRSVV 279
Query: 86 SQIHGFHMLINDLKNENIILPESF-----------------------------------M 110
Q H ML +L+N N LP+ F +
Sbjct: 280 EQAHEIQMLAKELENNNCELPDKFVAGGIIAKLPPSWSDFATSLKHKRQEFSVPDLIGSL 339
Query: 111 TIDQLEKAKEITSK-------ANIV-KNEAHPSKNQKPNKKFFKNKKTT------FKKKK 156
+++ +AK++ K AN+V K H S N K K K K T K K
Sbjct: 340 GVEEKARAKDVRGKKVEGGSSANMVQKKNPHASHNNKKVKPDVKPKAATNFKKKGKGKAK 399
Query: 157 GNCYVCGKPGHFANKCRYRKGDHKPPKANLVDGE 190
G+C+VCGK GH+A C RK D K AN++ E
Sbjct: 400 GDCFVCGKSGHWAKDCPERK-DRK--SANMIISE 430
>gi|57900690|gb|AAW57815.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1109
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 86/211 (40%), Gaps = 59/211 (27%)
Query: 28 KANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGA--------QNFKMA 79
+A + ILS LS+ L +VY A E+W L K+ DA +++MA
Sbjct: 56 EATTLFVGCILSVLSDRLVEVYMHMTDAKELWDALNTKFGATDASIDVYIMEQFHDYRMA 115
Query: 80 EDKEVTSQIHGFHMLINDLKNENIILPESFM----------------------------- 110
+++ V Q H + +L+ +LP+ F+
Sbjct: 116 DNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYSIE 175
Query: 111 ----TIDQLEKAKE--ITSKANIVKNEA---HPSKNQKPNKKFFKNKKTTFK-------- 153
++D EKA+E SK + ++ A H + N+ K +K ++TT
Sbjct: 176 GLIASLDIEEKAREKDAASKGDGGQSSANVVHKAHNKSKGK--YKAQQTTNFKKQKKNNN 233
Query: 154 ---KKKGNCYVCGKPGHFANKCRYRKGDHKP 181
+ +G C+VCG+PGH A KC R G P
Sbjct: 234 NPNQDEGTCFVCGQPGHLARKCLQRMGMKAP 264
>gi|77551155|gb|ABA93952.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1336
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 86/210 (40%), Gaps = 57/210 (27%)
Query: 28 KANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAG--------AQNFKMA 79
+A + ILS L N L +VY A E+W L K+ DA ++KMA
Sbjct: 56 EATTLFVGCILSVLGNRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMA 115
Query: 80 EDKEVTSQIHGFHMLINDLKNENIILPESFM----------------------------- 110
+++ V + H + +L+ +LP+ F+
Sbjct: 116 DNRSVVKRAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYSVE 175
Query: 111 ----TIDQLEKAKE--ITSKANIVKNEA---HPSKNQKPNKKFFKNKKTTFKKKKGN--- 158
++D EKA+E SK + ++ A H ++N K K+ + T FKK+K N
Sbjct: 176 GLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQN-KSKGKYKAQQTTNFKKQKKNNIN 234
Query: 159 -------CYVCGKPGHFANKCRYRKGDHKP 181
C+VCG+ GH A KC RKG P
Sbjct: 235 PNQDERTCFVCGQVGHLARKCPQRKGMKAP 264
>gi|77554328|gb|ABA97124.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1453
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 91/214 (42%), Gaps = 60/214 (28%)
Query: 34 RSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQ--------NFKMAEDKEVT 85
R ++S L++ + DVY ++W L K+ + DAG++ ++KM +D+ V
Sbjct: 217 RGALISVLADNIVDVYMHMPSGKDMWDALEAKFGVSDAGSELYIMEQFYDYKMVDDRSVV 276
Query: 86 SQIHGFHMLINDLKNENIILPESF-----------------------------------M 110
Q H ML +L+N N LP+ F +
Sbjct: 277 EQAHEIQMLAKELENNNCELPDKFVAGGIIAKLPPSWSDFATSLKHKRQEFSVPDLIGSL 336
Query: 111 TIDQLEKAKEITSK-------ANIV-KNEAHPSKNQKPNKKFFKNKKTT------FKKKK 156
+++ +AK++ K AN+V K H S N K K K K T K K
Sbjct: 337 GVEEKARAKDVRGKKVEGGSSANMVQKKNPHASHNNKKVKPDVKPKAATNFKKKGKGKAK 396
Query: 157 GNCYVCGKPGHFANKCRYRKGDHKPPKANLVDGE 190
G+C+VCGK GH+A C RK D K AN++ E
Sbjct: 397 GDCFVCGKSGHWAKDCPERK-DRK--SANMIISE 427
>gi|54291731|gb|AAV32100.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1388
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 91/214 (42%), Gaps = 60/214 (28%)
Query: 34 RSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQ--------NFKMAEDKEVT 85
R ++S L++ + DVY ++W L K+ + DAG++ ++KM +D+ V
Sbjct: 207 RGALISVLADNIVDVYMHMPSGKDMWDALEAKFGVSDAGSELYVMEQFYDYKMVDDRSVV 266
Query: 86 SQIHGFHMLINDLKNENIILPESF-----------------------------------M 110
Q H ML +L+N N LP+ F +
Sbjct: 267 EQAHEIQMLAKELENNNYELPDKFVAGGIIAKLPHSWSDFATSLKHKRQEFSVPDLIGSL 326
Query: 111 TIDQLEKAKEITSK-------ANIV-KNEAHPSKNQKPNKKFFKNKKTT------FKKKK 156
+++ +AK++ K AN+V K H S N K K K K T K K
Sbjct: 327 GVEEKARAKDVRGKKVEGGSSANMVQKKNPHASHNNKKVKPDVKPKAATNFKKKGKGKAK 386
Query: 157 GNCYVCGKPGHFANKCRYRKGDHKPPKANLVDGE 190
G+C+VCGK GH+A C RK D K AN++ E
Sbjct: 387 GDCFVCGKSGHWAKDCPERK-DRK--SANMIISE 417
>gi|116309875|emb|CAH66912.1| OSIGBa0126B18.5 [Oryza sativa Indica Group]
Length = 1413
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 91/214 (42%), Gaps = 60/214 (28%)
Query: 34 RSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQ--------NFKMAEDKEVT 85
R ++S L++ + DVY ++W L K+ + DAG++ ++KM +D+ V
Sbjct: 177 RGALISVLADNIVDVYMHMPSGKDMWDALEAKFGVSDAGSELYVMEQFYDYKMVDDRSVV 236
Query: 86 SQIHGFHMLINDLKNENIILPESF-----------------------------------M 110
Q H ML +L+N N LP+ F +
Sbjct: 237 EQAHEIQMLAKELENNNCELPDKFVAGGIIAKLPPSWSDFATSLKHKRQEFSVPDLIGSL 296
Query: 111 TIDQLEKAKEITSK-------ANIV-KNEAHPSKNQKPNKKFFKNKKTT------FKKKK 156
+++ +AK++ K AN+V K H S N K K K K T K K
Sbjct: 297 GVEEKARAKDVRGKKVEGGSSANMVQKKNPHASHNNKKVKPDVKPKAATNFKKKSKGKAK 356
Query: 157 GNCYVCGKPGHFANKCRYRKGDHKPPKANLVDGE 190
G+C+VCGK GH+A C RK D K AN++ E
Sbjct: 357 GDCFVCGKSGHWAKDCPERK-DRK--SANMIISE 387
>gi|77555288|gb|ABA98084.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1298
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 91/214 (42%), Gaps = 60/214 (28%)
Query: 34 RSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQ--------NFKMAEDKEVT 85
R ++S L++ + DVY ++W L K+ + DAG++ ++KM +D+ V
Sbjct: 177 RGALISVLADNIVDVYMHMPSGKDMWDALEAKFGVSDAGSELYVMEQFYDYKMVDDRSVV 236
Query: 86 SQIHGFHMLINDLKNENIILPESF-----------------------------------M 110
Q H ML +L+N N LP+ F +
Sbjct: 237 EQAHEIQMLAKELENNNCELPDKFVAGGIIAKLPPSWSDFATSLKHKRQEFSVPDLIGSL 296
Query: 111 TIDQLEKAKEITSK-------ANIV-KNEAHPSKNQKPNKKFFKNKKTT------FKKKK 156
+++ +AK++ K AN+V K H S N K K K K T K K
Sbjct: 297 GVEEKARAKDVRGKKVEGGSSANMVQKKNPHASHNNKKVKPDVKPKAATNFKKKSKGKAK 356
Query: 157 GNCYVCGKPGHFANKCRYRKGDHKPPKANLVDGE 190
G+C+VCGK GH+A C RK D K AN++ E
Sbjct: 357 GDCFVCGKSGHWAKDCPERK-DRK--SANMIISE 387
>gi|77548324|gb|ABA91121.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1186
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 91/214 (42%), Gaps = 60/214 (28%)
Query: 34 RSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQ--------NFKMAEDKEVT 85
R ++S L++ + DVY ++W L K+ + DAG++ ++KM +D+ V
Sbjct: 220 RGALISVLADNIVDVYMHMPSGKDMWDALEAKFGVSDAGSELYVMEQFYDYKMVDDRSVV 279
Query: 86 SQIHGFHMLINDLKNENIILPESF-----------------------------------M 110
Q H ML +L+N N LP+ F +
Sbjct: 280 EQAHEIQMLAKELENNNCELPDKFVAGGIIAKLPPSWSDFATSLKHKRQEFSVPDLIGSL 339
Query: 111 TIDQLEKAKEITSK-------ANIV-KNEAHPSKNQKPNKKFFKNKKTT------FKKKK 156
+++ +AK++ K AN+V K H S N K K K K T K K
Sbjct: 340 GVEEKARAKDVRGKKVEGGSSANMVQKKNPHASHNNKKVKPDVKPKVATNFKKKGKGKAK 399
Query: 157 GNCYVCGKPGHFANKCRYRKGDHKPPKANLVDGE 190
G+C+VCGK GH+A C RK D K AN++ E
Sbjct: 400 GDCFVCGKSGHWAKDCPERK-DRK--SANMIISE 430
>gi|77555989|gb|ABA98785.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1303
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 91/214 (42%), Gaps = 60/214 (28%)
Query: 34 RSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQ--------NFKMAEDKEVT 85
R ++S L++ + DVY ++W L K+ + DAG++ ++KM +D+ V
Sbjct: 177 RGALISVLADNIVDVYMHMPSGKDMWDALEAKFGVSDAGSELYVMEQFYDYKMVDDRSVV 236
Query: 86 SQIHGFHMLINDLKNENIILPESF-----------------------------------M 110
Q H ML +L+N N LP+ F +
Sbjct: 237 EQAHEIQMLAKELENNNCELPDKFVAGGIIAKLPPSWSDFATSLKHKRQEFSVPDLIGSL 296
Query: 111 TIDQLEKAKEITSK-------ANIV-KNEAHPSKNQKPNKKFFKNKKTT------FKKKK 156
+++ +AK++ K AN+V K H S N K K K K T K K
Sbjct: 297 GVEEKARAKDVRGKKVEGGSSANMVQKKNPHASHNNKKVKPDVKPKAATNFKKKSKGKAK 356
Query: 157 GNCYVCGKPGHFANKCRYRKGDHKPPKANLVDGE 190
G+C+VCGK GH+A C RK D K AN++ E
Sbjct: 357 GDCFVCGKSGHWAKDCPERK-DRK--SANMIISE 387
>gi|218184065|gb|EEC66492.1| hypothetical protein OsI_32588 [Oryza sativa Indica Group]
Length = 374
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 90/214 (42%), Gaps = 60/214 (28%)
Query: 34 RSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQ--------NFKMAEDKEVT 85
R ++S L++ + DVY ++W L K+ + DAG++ ++KM +D+ V
Sbjct: 78 RGALISVLADNIVDVYMHMPSGKDMWDALEAKFGVSDAGSELYVMEQFYDYKMVDDRSVV 137
Query: 86 SQIHGFHMLINDLKNENIILPESF-----------------------------------M 110
Q H ML +L+N N LP+ F +
Sbjct: 138 EQAHEIQMLAKELENNNCELPDKFVAGGIIAKLPPTWSDFATSLKHKRQEFSVSDLIGSL 197
Query: 111 TIDQLEKAKEITSK-------ANIV-KNEAHPSKNQKPNKKFFKNKKTT------FKKKK 156
+++ +AK++ K AN+V K H S N K K K K T K K
Sbjct: 198 GVEEKARAKDVRGKKVEGGSSANMVQKKNPHASHNNKKVKPDVKPKAATNFKKKGKGKAK 257
Query: 157 GNCYVCGKPGHFANKCRYRKGDHKPPKANLVDGE 190
G C+VCGK GH+A C RK D K AN+V E
Sbjct: 258 GYCFVCGKSGHWAKDCPERK-DRK--SANMVISE 288
>gi|77554242|gb|ABA97038.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 312
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 91/214 (42%), Gaps = 60/214 (28%)
Query: 34 RSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQ--------NFKMAEDKEVT 85
R ++S L++ + DVY ++W L K+ + DAG++ ++KM +D+ V
Sbjct: 32 RGALISVLADNIVDVYMHMPSGKDMWDALEAKFGVSDAGSELYVMEQFYDYKMVDDRSVV 91
Query: 86 SQIHGFHMLINDLKNENIILPESFMT------------------------------IDQL 115
Q H ML +L+N N L + F++ I L
Sbjct: 92 EQAHEIQMLAKELENNNCELSDKFVSGGIIAKLPPSWSDFATSLKHKRQEFSVSDLIGSL 151
Query: 116 ---EKAK---------EITSKANIV-KNEAHPSKNQKPNKKFFKNKKTT------FKKKK 156
EKA+ E S AN+V K H S N K K K K TT K K
Sbjct: 152 GVEEKARAKDNRGKKVEGGSSANMVQKKNPHASHNNKKVKPDVKPKATTNFKKKGKGKAK 211
Query: 157 GNCYVCGKPGHFANKCRYRKGDHKPPKANLVDGE 190
G+C+VCGK GH+A C RK D K AN+V E
Sbjct: 212 GDCFVCGKSGHWAKDCPKRK-DRK--SANMVISE 242
>gi|55416038|gb|AAV43959.2| putative polyprotein [Oryza sativa Japonica Group]
Length = 1268
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 91/214 (42%), Gaps = 60/214 (28%)
Query: 34 RSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQ--------NFKMAEDKEVT 85
R ++S L++ + DVY ++W L K+ + DAG++ ++KM +D+ V
Sbjct: 32 RGALISVLADNIVDVYMHMPSRKDMWDALEAKFGVSDAGSELYVMEQFYDYKMVDDRSVV 91
Query: 86 SQIHGFHMLINDLKNENIILPESF-----------------------------------M 110
Q H ML +L+N N LP+ F +
Sbjct: 92 EQAHEIQMLAKELENNNCELPDKFVAGGIIAKLPPSWSDFATSLKHKRQEFSVPDLIGSL 151
Query: 111 TIDQLEKAKEITSK-------ANIV-KNEAHPSKNQKPNKKFFKNKKTT------FKKKK 156
+++ +AK++ K AN+V K H S N K K K K T K K
Sbjct: 152 GVEEKARAKDVRGKKVEGGSSANMVQKKNPHASHNNKKVKPDVKPKAATNFKKKSKGKAK 211
Query: 157 GNCYVCGKPGHFANKCRYRKGDHKPPKANLVDGE 190
G+C+VCGK GH+A C RK D K AN++ E
Sbjct: 212 GDCFVCGKSGHWAKDCPERK-DRK--SANMIISE 242
>gi|108862128|gb|ABG21864.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1297
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 90/214 (42%), Gaps = 60/214 (28%)
Query: 34 RSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQ--------NFKMAEDKEVT 85
R ++S L++ + DVY ++W L K+ + DAG++ ++KM +D V
Sbjct: 134 RGALISVLADNIVDVYMHMPSGKDMWDALEAKFGVSDAGSELYVMEQFYDYKMVDDHSVV 193
Query: 86 SQIHGFHMLINDLKNENIILPESF-----------------------------------M 110
Q H ML +L+N N LP+ F +
Sbjct: 194 EQAHEIQMLAKELENNNCELPDKFVAGGIIAKLPPSWSDFATSLKHKRQEFSVPDLIGSL 253
Query: 111 TIDQLEKAKEITSK-------ANIV-KNEAHPSKNQKPNKKFFKNKKTT------FKKKK 156
+++ +AK++ K AN+V K H S N K K K K T K K
Sbjct: 254 GVEEKARAKDVRGKKVEGGSSANMVQKKNPHASHNNKKVKPDVKPKAATNFKKKGKGKAK 313
Query: 157 GNCYVCGKPGHFANKCRYRKGDHKPPKANLVDGE 190
G+C+VCGK GH+A C RK D K AN+V E
Sbjct: 314 GDCFVCGKSGHWAKDCPERK-DRK--SANMVISE 344
>gi|62734178|gb|AAX96287.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group]
gi|62734227|gb|AAX96336.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group]
gi|77549796|gb|ABA92593.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1099
Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 66/240 (27%), Positives = 97/240 (40%), Gaps = 66/240 (27%)
Query: 8 TEPPPDSDSENYEVLLQNWIKANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYI 67
+EPP + E + ++ + R ++S L++ + DVY ++W L K+
Sbjct: 178 SEPPLSPEEE------AKFEASDCLFRGALISVLADNIVDVYMHMPSGKDMWDALEAKFG 231
Query: 68 IEDAGAQ--------NFKMAEDKEVTSQIHGFHMLINDLKNENIILPESFM--------- 110
+ DAG++ ++K+ +D+ V Q H ML +L+N N LP+ F+
Sbjct: 232 VSDAGSELYVMEQFYDYKIVDDRSVVEQAHEIQMLAKELENNNCELPDKFVAGGIIAKLP 291
Query: 111 ---------------------------------TIDQLEKAKEITSKANIV-KNEAHPSK 136
T D K E S AN+V K H S
Sbjct: 292 PSWSDLATSLKHKRQEFSVSDLIGSLGVEEKARTKDVRGKKVEGGSSANMVQKKNPHASH 351
Query: 137 NQKPNKKFFKNKKTT------FKKKKGNCYVCGKPGHFANKCRYRKGDHKPPKANLVDGE 190
N K K K K T K KG+C+VCGK GH+A C RK D K AN+V E
Sbjct: 352 NNKKVKPDVKPKAATNFKNKGKGKAKGDCFVCGKSGHWAKDCPERK-DRK--SANMVISE 408
>gi|77552577|gb|ABA95374.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1314
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 91/214 (42%), Gaps = 60/214 (28%)
Query: 34 RSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQ--------NFKMAEDKEVT 85
R ++S L++ + DVY ++W L K+ + DAG++ ++KM +D+ V
Sbjct: 204 RGALISVLADNIVDVYMHMPSGKDMWDALEAKFGVSDAGSELYVMEQFYDYKMVDDRSVV 263
Query: 86 SQIHGFHMLINDLKNENIILPESF-----------------------------------M 110
Q H ML +L+N N LP+ F +
Sbjct: 264 EQAHEIQMLAKELENNNCELPDKFVAGGIIAKLPPSWSDFATSLKHKRQEFSVPDLIGSL 323
Query: 111 TIDQLEKAKEITSK-------ANIV-KNEAHPSKNQKPNKKFFKNKKTT------FKKKK 156
+++ +AK++ K AN+V K H S N K K K K T K K
Sbjct: 324 GVEKKARAKDVQGKKVEGGSSANMVQKKNPHASHNNKKVKPDVKPKTATNFKKKGKGKAK 383
Query: 157 GNCYVCGKPGHFANKCRYRKGDHKPPKANLVDGE 190
G+C+VCGK GH+A C RK D K AN++ E
Sbjct: 384 GDCFVCGKSGHWAKDCPERK-DRK--SANMIISE 414
>gi|77554789|gb|ABA97585.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 401
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 90/212 (42%), Gaps = 61/212 (28%)
Query: 37 ILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQ--------NFKMAEDKEVTSQI 88
++S L++ + DVY ++W L K+ + DAG++ ++KM +D+ V Q
Sbjct: 185 LISVLADNIVDVYMHIPSGKDMWDALEAKFGVSDAGSELYVMEQFYDYKMVDDRSVVEQA 244
Query: 89 HGFHMLINDLKNENIILPESF-----------------------------------MTID 113
H +L+ +L+ N LPE F + I+
Sbjct: 245 HEIQILVKELEKNNCDLPEKFVAGGIIANMPPSWSDFATSVKHKRQAFSVTDLIGSLGIE 304
Query: 114 QLEKAKEITSK-------ANIV--KNEAHPSKNQKPNKKFFKNKKTT------FKKKKGN 158
+ +AK+ K AN+V KN N + K K K TT K KG+
Sbjct: 305 EKARAKDNRGKNIEEGFSANLVQKKNPHASHNNNQKVKPDVKPKATTNFKKKGKGKAKGD 364
Query: 159 CYVCGKPGHFANKCRYRKGDHKPPKANLVDGE 190
C+VCGKPGH+A C RK D K AN+V E
Sbjct: 365 CFVCGKPGHWAKDCPERK-DKK--SANMVISE 393
>gi|41469266|gb|AAS07148.1| putative gag pol polyprotein , 3'-partial [Oryza sativa Japonica
Group]
Length = 477
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 110/258 (42%), Gaps = 58/258 (22%)
Query: 1 MNLAEFLTEPPPDSDS----ENYEVLLQNWIKANKVCRSTILSTLSNELYDVYSQHKFAY 56
+A F PD + + +++ + W+ A K + T + EL+D + A
Sbjct: 37 FTMASFADALRPDKFTGVHFKRWQIRVTLWLTAMKCFWVYMHMTDAKELWDALNTKCGAT 96
Query: 57 EIWAQLRKKYIIEDAGAQNFKMAEDKEVTSQIHGFHMLINDLKNENIILPESFM------ 110
+ L YI+E ++KMA+++ V Q H + +L+ +LP+ F+
Sbjct: 97 DASNDL---YIMEQF--HDYKMADNRSVVEQAHEIQTMAKELELLKCVLPDKFVARQEYS 151
Query: 111 ------TIDQLEKAKE--ITSK-------ANIVKNEAHPSKNQKPNKKFFKNKKTTFK-- 153
++D EKA+E TSK ANIV H ++N+ K +K ++TT
Sbjct: 152 VEGLIASLDVEEKAREKDATSKDDGGQSSANIV----HKAQNKSKGK--YKAQQTTNFKK 205
Query: 154 ---------KKKGNCYVCGKPGHFANKCRYRKGDHKPPKANLVDGEDIIV---------- 194
+ + C+VCG+ GH A KC RKG K P NLV G +
Sbjct: 206 QKKNNNNSNQDERTCFVCGQLGHLARKCPQRKG-MKAPAGNLVSGSRLTRDGFKLVFKSN 264
Query: 195 AVVVTQENMVAAKGKKNG 212
VVV++ KG + G
Sbjct: 265 KVVVSKHGYFIGKGYECG 282
>gi|62734000|gb|AAX96109.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group]
Length = 1350
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 86/211 (40%), Gaps = 59/211 (27%)
Query: 28 KANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAG--------AQNFKMA 79
+A +C ILS L + L +VY A E+W L K+ DA ++KMA
Sbjct: 56 EATTLCVGCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMA 115
Query: 80 EDKEVTSQIHGFHMLINDLKNENIILPESFM----------------------------- 110
+++ V Q H + +L+ +LP+ F+
Sbjct: 116 DNRSVVEQAHEIQTMAKELELLKCVLPDKFVARCIIAKLPPSWRSFGTALKHKRQEYSVE 175
Query: 111 ----TIDQLEKAKE--ITSKANIVKNEA---HPSKNQKPNKKFFKNKKTT---------- 151
++D EKA+E SK + ++ A H ++N+ K +K ++TT
Sbjct: 176 GLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK--YKAQQTTNFKKQKKNNN 233
Query: 152 -FKKKKGNCYVCGKPGHFANKCRYRKGDHKP 181
+ + C+VCG+ GH A KC RKG P
Sbjct: 234 NPNQDERTCFVCGQLGHLARKCPQRKGMKAP 264
>gi|62733257|gb|AAX95374.1| Integrase core domain, putative [Oryza sativa Japonica Group]
gi|108864298|gb|ABA92908.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1393
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 86/211 (40%), Gaps = 59/211 (27%)
Query: 28 KANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAG--------AQNFKMA 79
+A +C ILS L + L +VY A E+W L K+ DA ++KMA
Sbjct: 56 EATTLCVGCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMA 115
Query: 80 EDKEVTSQIHGFHMLINDLKNENIILPESFM----------------------------- 110
+++ V Q H + +L+ +LP+ F+
Sbjct: 116 DNRSVVEQAHEIQTMAKELELLKCVLPDKFVARCIIAKLPPSWRSFGTALKHKRQEYSVE 175
Query: 111 ----TIDQLEKAKE--ITSKANIVKNEA---HPSKNQKPNKKFFKNKKTT---------- 151
++D EKA+E SK + ++ A H ++N+ K +K ++TT
Sbjct: 176 GLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK--YKAQQTTNFKKQKKNNN 233
Query: 152 -FKKKKGNCYVCGKPGHFANKCRYRKGDHKP 181
+ + C+VCG+ GH A KC RKG P
Sbjct: 234 NPNQDERTCFVCGQLGHLARKCPQRKGMKAP 264
>gi|31415906|gb|AAP50927.1| putative polyprotein [Oryza sativa Japonica Group]
gi|108708705|gb|ABF96500.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1240
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 101/240 (42%), Gaps = 66/240 (27%)
Query: 8 TEPPPDSDSENYEVLLQNWIKANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYI 67
+EPP + E + ++ V R ++S L++ + DVY ++W L K+
Sbjct: 12 SEPPLSPEEE------AKFDASDCVFRGALISVLADNIVDVYMHMPSGKDMWDALEAKFG 65
Query: 68 IEDAGAQ--------NFKMAEDKEVTSQIHGFHMLINDLKNENIILPESF---------- 109
+ DAG++ ++KM +D+ V Q + ML +L+N N LP+ F
Sbjct: 66 VSDAGSELYVMEQFYDYKMVDDRSVVEQAYEIQMLAKELENNNCELPDKFVAGGIIAKLP 125
Query: 110 -------------------------MTIDQLEKAKEITSK-------ANIV-KNEAHPSK 136
+ +++ +AK++ K AN+V K H S
Sbjct: 126 PSWSDFATSLKHKRQEFSVPDLIGSLGVEEKARAKDVRGKKVEGGSSANMVQKKNPHASH 185
Query: 137 NQKPNKKFFKNKKTT------FKKKKGNCYVCGKPGHFANKCRYRKGDHKPPKANLVDGE 190
N K K K K T K KG+C+VCGK GH+A C RK D K AN++ E
Sbjct: 186 NNKKVKPDVKPKAATNFKKKGKGKAKGDCFVCGKSGHWAKDCPERK-DRK--SANMIISE 242
>gi|77557017|gb|ABA99813.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1448
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 91/214 (42%), Gaps = 60/214 (28%)
Query: 34 RSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQ--------NFKMAEDKEVT 85
R ++S L++ + DVY ++W L K+ + DAG++ ++KM +++ V
Sbjct: 212 RGALISVLADNIVDVYMHMPSGKDMWDALEAKFGVSDAGSELYVMEQFYDYKMVDNRSVV 271
Query: 86 SQIHGFHMLINDLKNENIILPESF-----------------------------------M 110
Q H ML +L+N N LP+ F +
Sbjct: 272 EQAHEIQMLAKELENNNCELPDKFVAGGIIAKLPPSWSDFATSLKHKRQEFSVSDLIGSL 331
Query: 111 TIDQLEKAKEI-------TSKANIV-KNEAHPSKNQKPNKKFFKNKKTT------FKKKK 156
+++ +AK++ S AN+V K H S N K K K K T K K
Sbjct: 332 GVEEKARAKDVRGKKVEGCSSANMVQKKNPHASHNNKKVKPDVKPKAATNFKKKGKGKAK 391
Query: 157 GNCYVCGKPGHFANKCRYRKGDHKPPKANLVDGE 190
G+C+VCGK GH+A C RK D K AN+V E
Sbjct: 392 GDCFVCGKSGHWAKDCPERK-DRK--SANMVISE 422
>gi|77553454|gb|ABA96250.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1287
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 84/200 (42%), Gaps = 57/200 (28%)
Query: 34 RSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQ--------NFKMAEDKEVT 85
R ++S L++ + DVY ++W L K+ + DAG++ ++KM +D+ V
Sbjct: 177 RGALISVLADNIVDVYMHMPSRKDMWDALEAKFGVSDAGSELYVMEQFYDYKMVDDRSVV 236
Query: 86 SQIHGFHMLINDLKNENIILPESF-----------------------------------M 110
Q H ML +L+N N LP+ F +
Sbjct: 237 EQAHEIQMLAKELENNNCELPDKFVAGGIIAKLPPSWSDFATSLKHKRQEFSVPDLIGSL 296
Query: 111 TIDQLEKAKEITSK-------ANIV-KNEAHPSKNQKPNKKFFKNKKTT------FKKKK 156
+++ +AK++ K AN+V K H S N K K K K T K K
Sbjct: 297 GVEEKARAKDVRGKKVEGGCSANMVQKKNPHASHNNKKVKPDVKPKAATNFKKKSKGKAK 356
Query: 157 GNCYVCGKPGHFANKCRYRK 176
G+C+VCGK GH+A C RK
Sbjct: 357 GDCFVCGKSGHWAKDCPERK 376
>gi|77553430|gb|ABA96226.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 975
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 66/242 (27%), Positives = 105/242 (43%), Gaps = 70/242 (28%)
Query: 8 TEPP--PDSDSENYEVLLQNWIKANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKK 65
+EPP P+ ++E +E ++ + R ++S L++ + DVY ++W L K
Sbjct: 12 SEPPLSPEEEAE-FEA-------SDCLFRGALISVLADNIVDVYMHMPSGKDMWDALEAK 63
Query: 66 YIIEDAGAQ--------NFKMAEDKEVTSQIHGFHMLINDLKNENIILPESF-------- 109
+ + DA ++ ++KM +D+ V Q H ML +L+N N LP+ F
Sbjct: 64 FGVSDADSELYVMEQFYDYKMVDDRSVVEQAHEIQMLAKELENNNCELPDKFVAGGIIAK 123
Query: 110 ---------------------------MTIDQLEKAKEITSK-------ANIV-KNEAHP 134
+ +++ +AK++ K AN+V K +H
Sbjct: 124 LPPSWSDFATSLKHKRQEFSVSDLIGSLGVEEKVRAKDVRGKKVEGGSSANMVQKKNSHA 183
Query: 135 SKNQKPNKKFFKNKKTT------FKKKKGNCYVCGKPGHFANKCRYRKGDHKPPKANLVD 188
S N K K K K T K KG+C+VCGK GH+A C RK D K AN+V
Sbjct: 184 SHNNKKVKPDVKPKAATNFKKKGKGKAKGDCFVCGKSGHWAKDCPERK-DRK--SANMVI 240
Query: 189 GE 190
E
Sbjct: 241 SE 242
>gi|110289417|gb|ABG66192.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1457
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 68/240 (28%), Positives = 100/240 (41%), Gaps = 66/240 (27%)
Query: 8 TEPPPDSDSENYEVLLQNWIKANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYI 67
+EPP D E + ++ + R ++S L++ + DVY ++W L K+
Sbjct: 201 SEPPLSPDEE------AKFEASDCLFRGALISVLADNIVDVYMHMPSGKDMWDALEAKFG 254
Query: 68 IEDAGAQ--------NFKMAEDKEVTSQIHGFHMLINDLKNENIILPESFMT-------- 111
+ DAG++ ++KM +D+ V Q + ML +L+N N LP+ F+
Sbjct: 255 VSDAGSELYVMEQFYDYKMVDDRSVVEQAYEIQMLAKELENNNCELPDKFVAGGIIAKLP 314
Query: 112 ----------------------IDQL---EKAK---------EITSKANIV-KNEAHPSK 136
I L EKA+ E S AN+V K H S
Sbjct: 315 PSWSDLATSLKHKRQEFSVPDLIGSLGVEEKARAKYVRGKKVEGGSSANMVQKKNPHASH 374
Query: 137 NQKPNKKFFKNKKTT------FKKKKGNCYVCGKPGHFANKCRYRKGDHKPPKANLVDGE 190
N K K K K T K KG+C+VCGK GH+A C RK D K AN++ E
Sbjct: 375 NNKKVKPDVKPKAATNFKKKGKGKAKGDCFVCGKSGHWAKDCPERK-DRK--SANMIISE 431
>gi|32483246|emb|CAE02547.1| OSJNBb0069N01.13 [Oryza sativa Japonica Group]
Length = 727
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 75/168 (44%), Gaps = 33/168 (19%)
Query: 37 ILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAG--------AQNFKMAEDKEVTSQI 88
ILS L + L +VY A E+W L K+ DA ++KMA+++ V Q
Sbjct: 34 ILSVLGDRLVEVYIHMTDAKELWDALIAKFGATDASNNLYIMELFHDYKMADNRSVVEQA 93
Query: 89 HGFHMLINDLKNENIILPESFM-TIDQLEKAKE---------ITSKANIVKNEAHPSKNQ 138
H + L+ + E + ++D EK +E S AN+V H ++N+
Sbjct: 94 HVIQTMAKKLEQAHEYSVEGLIASLDVEEKTREKDSASKGDGGQSSANVV----HKAQNK 149
Query: 139 KPNKKFFKNKKTTFK---------KKKGNCYVCGKPGHFANKCRYRKG 177
K +K ++TT + + C+VCG PGH A KC RKG
Sbjct: 150 SKGK--YKAQQTTNLKKKKNNNPNQDERTCFVCGLPGHLARKCPQRKG 195
>gi|16610191|emb|CAD10638.1| PBF68 protein [Nicotiana tabacum]
Length = 594
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 93/206 (45%), Gaps = 43/206 (20%)
Query: 1 MNLAEFLTEPPPDSDSENYEVLLQNWIKANKVCRSTILSTLSNELYDVYSQHKF-AYEIW 59
+N+A L+EP P++ EN Q W+ + +C IL++LS++L++ YS+ + A E+W
Sbjct: 318 LNIAYVLSEPCPNT-LENR----QKWVDDDYLCCHNILNSLSDKLFEEYSKKNYSAKELW 372
Query: 60 AQLRKKYIIEDAGAQN--------FKMAEDKEVTSQIHGFHMLINDLKNENIILPESFMT 111
+LR Y ED G ++ F M + + Q+ H + + L I + E+F
Sbjct: 373 EELRSTY-DEDFGTKSSEVNKYLQFLMVDGISILEQVQELHKIADSLMASGIWIDENFHI 431
Query: 112 IDQLEKA----KEITSKANIVKNEAHPS------------------KNQKPNKKFFKNKK 149
+ K K+ ++ + +E PS +N K K+ KK
Sbjct: 432 SAIIAKLPPSWKDCRTR---LMHENVPSLDMLMHHLRVEDDCRNRYRNDKHEKRVGARKK 488
Query: 150 TTFKKKKGNCYVCGKPGHFANKCRYR 175
KK+ CY CGK GH + C R
Sbjct: 489 DLSKKQ---CYNCGKEGHISKYCTER 511
>gi|147802529|emb|CAN73119.1| hypothetical protein VITISV_020442 [Vitis vinifera]
Length = 588
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 40/57 (70%), Gaps = 8/57 (14%)
Query: 62 LRKKYIIEDAGAQ--------NFKMAEDKEVTSQIHGFHMLINDLKNENIILPESFM 110
+ KKYI+EDAG Q NF+M ED++V+SQIH +H+LINDL ++I L E F+
Sbjct: 1 MNKKYIVEDAGTQKYAIGNFRNFQMTEDRDVSSQIHDYHLLINDLAIKDIKLSEPFV 57
>gi|147865803|emb|CAN81142.1| hypothetical protein VITISV_018481 [Vitis vinifera]
Length = 622
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 51/79 (64%), Gaps = 14/79 (17%)
Query: 62 LRKKYIIEDAGAQ--------NFKMAEDKEVTSQIHGFHMLINDLKNENII----LPESF 109
+ KKY ++D G Q NF+MAED++V+SQIH +H+LIND +E++I + E
Sbjct: 1 MXKKYTLKDXGTQKYVIGNFRNFQMAEDRDVSSQIHDYHLLIND--SEDVIVHIRIEEQN 58
Query: 110 MTIDQLEKAKEITSKANIV 128
D +EKAKE +SKA ++
Sbjct: 59 RNRDNVEKAKEFSSKAKVI 77
>gi|41393211|gb|AAS01934.1| putative Integrase core domain containing protein [Oryza sativa
Japonica Group]
Length = 1180
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 92/225 (40%), Gaps = 64/225 (28%)
Query: 14 SDSENYEVLLQNWIKANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAG- 72
S +++YE+LL A + ILS L + L +VY A E+W L K+ DA
Sbjct: 7 SVADSYEMLL-----ATTLFVGCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASN 61
Query: 73 -------AQNFKMAEDKEVTSQIHGFHMLINDLKNENIILPESFM--------------- 110
++KMA+++ V Q H + +L+ +LP+ F+
Sbjct: 62 DLYIMEQFHDYKMADNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSF 121
Query: 111 ------------------TIDQLEKAKE--ITSKANIVKNEA---HPSKNQKPNKKFFKN 147
++D EKA+E SK + ++ A H ++N+ K +K
Sbjct: 122 GTALKHKRQEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK--YKA 179
Query: 148 KKTT-----------FKKKKGNCYVCGKPGHFANKCRYRKGDHKP 181
+ TT + + C+VCG+ GH A KC RKG P
Sbjct: 180 QHTTNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQRKGMKAP 224
>gi|77553983|gb|ABA96779.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1468
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 85/210 (40%), Gaps = 57/210 (27%)
Query: 28 KANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAG--------AQNFKMA 79
+A + ILS L + L +VY A E+W L K+ DA ++KMA
Sbjct: 143 EATTLFVGCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMA 202
Query: 80 EDKEVTSQIHGFHMLINDLKNENIILPESFM----------------------------- 110
+++ V Q H + +L+ +LP+ F+
Sbjct: 203 DNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYSVE 262
Query: 111 ----TIDQLEKAKE--ITSKANIVKNEA---HPSKNQKPNKKFFKNKKTTFKKKKGN--- 158
++D EKA+E SK + ++ A H ++N K K+ + T FKK+K N
Sbjct: 263 GLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQN-KSKGKYKAQQTTNFKKQKKNNIN 321
Query: 159 -------CYVCGKPGHFANKCRYRKGDHKP 181
C+VCG+ GH A KC KG P
Sbjct: 322 PNQDERTCFVCGQVGHLARKCLQCKGMKAP 351
>gi|116309544|emb|CAH66607.1| H0211A12.10 [Oryza sativa Indica Group]
Length = 1200
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 90/214 (42%), Gaps = 60/214 (28%)
Query: 34 RSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQ--------NFKMAEDKEVT 85
R ++S L++ + DVY ++W L K+ + DAG++ ++K+ +D+ V
Sbjct: 180 RGALISVLADNIVDVYMHMPSGKDMWDALEAKFGVSDAGSELYVMEQFYDYKIFDDRSVV 239
Query: 86 SQIHGFHMLINDLKNENIILPESF-----------------------------------M 110
Q H ML +L+N N LP+ F +
Sbjct: 240 EQAHEIQMLAKELENNNCELPDKFVAGGIITKLPPSWSDFATSLKHKRQEFSISDLIGSL 299
Query: 111 TIDQLEKAKEITSK-------ANIV-KNEAHPSKNQKPNKKFFKNKKTT------FKKKK 156
+++ +AK++ K AN+V K H S N K K K K T K K
Sbjct: 300 GVEEKARAKDVRGKKVEGGSSANMVQKKNPHASHNNKKVKPDVKPKAATNFKKKGKGKAK 359
Query: 157 GNCYVCGKPGHFANKCRYRKGDHKPPKANLVDGE 190
+C+VCGK GH+A C RK D K AN+V E
Sbjct: 360 VDCFVCGKSGHWAKDCPERK-DRK--SANMVISE 390
>gi|38347189|emb|CAD37106.2| OSJNBa0024J22.17 [Oryza sativa Japonica Group]
Length = 1200
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 90/214 (42%), Gaps = 60/214 (28%)
Query: 34 RSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQ--------NFKMAEDKEVT 85
R ++S L++ + DVY ++W L K+ + DAG++ ++K+ +D+ V
Sbjct: 180 RGALISVLADNIVDVYMHMPSGKDMWDALEAKFGVSDAGSELYVMEQFYDYKIFDDRSVV 239
Query: 86 SQIHGFHMLINDLKNENIILPESF-----------------------------------M 110
Q H ML +L+N N LP+ F +
Sbjct: 240 EQAHEIQMLAKELENNNCELPDKFVAGGIITKLPPSWSDFATSLKHKRQEFSISDLIGSL 299
Query: 111 TIDQLEKAKEITSK-------ANIV-KNEAHPSKNQKPNKKFFKNKKTT------FKKKK 156
+++ +AK++ K AN+V K H S N K K K K T K K
Sbjct: 300 GVEEKARAKDVRGKKVEGGSSANMVQKKNPHASHNNKKVKPDVKPKAATNFKKKGKGKAK 359
Query: 157 GNCYVCGKPGHFANKCRYRKGDHKPPKANLVDGE 190
+C+VCGK GH+A C RK D K AN+V E
Sbjct: 360 VDCFVCGKSGHWAKDCPERK-DRK--SANMVISE 390
>gi|51038137|gb|AAT93940.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1861
Score = 59.7 bits (143), Expect = 8e-07, Method: Composition-based stats.
Identities = 52/206 (25%), Positives = 81/206 (39%), Gaps = 67/206 (32%)
Query: 37 ILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGA--------QNFKMAEDKEVTSQI 88
ILS L + L +VY A E+W L K+ DA ++KMA+++ V Q
Sbjct: 479 ILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMADNRSVVEQA 538
Query: 89 HGFHMLINDLKNENIILPESFM---------------------------------TIDQL 115
H + +L+ +LP+ F+ ++D
Sbjct: 539 HEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYSVEGLIASLDVE 598
Query: 116 EKAKEI---------TSKANIVKNEAHPSKNQKPNKKFFKNKKTTFK-----------KK 155
EKA+E S AN+V H ++N+ K +K ++TT +
Sbjct: 599 EKAREKDAASKGDGGQSSANVV----HKAQNKSKGK--YKAQQTTNFKKQKKNNNNPNQD 652
Query: 156 KGNCYVCGKPGHFANKCRYRKGDHKP 181
+ C+VCG+ GH A KC RKG P
Sbjct: 653 ERTCFVCGQVGHLARKCPQRKGMKAP 678
>gi|108710065|gb|ABF97860.1| retrotransposon protein, putative, Ty1-copia subclass, expressed
[Oryza sativa Japonica Group]
Length = 661
Score = 59.7 bits (143), Expect = 8e-07, Method: Composition-based stats.
Identities = 51/206 (24%), Positives = 81/206 (39%), Gaps = 67/206 (32%)
Query: 37 ILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGA--------QNFKMAEDKEVTSQI 88
ILS L + L ++Y A E+W L K+ DA ++KMA+++ V Q
Sbjct: 435 ILSVLGDRLVEMYMHMTDAKELWDALNTKFGATDASNNLYIMEQFHDYKMADNRSVVEQA 494
Query: 89 HGFHMLINDLKNENIILPESFM---------------------------------TIDQL 115
H + +L+ +LP+ F+ ++D
Sbjct: 495 HEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYSVEGLIASLDVE 554
Query: 116 EKAKEI---------TSKANIVKNEAHPSKNQKPNKKFFKNKKTTFK-----------KK 155
EKA+E S AN+V H ++N+ K +K ++TT +
Sbjct: 555 EKAREKDAASKGDGGQSSANVV----HKAQNKSKGK--YKAQQTTNFKKQKKNNNNPNQD 608
Query: 156 KGNCYVCGKPGHFANKCRYRKGDHKP 181
+ C+VCG+ GH A KC RKG P
Sbjct: 609 ERTCFVCGQVGHLARKCPQRKGMKAP 634
>gi|50878429|gb|AAT85203.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 2772
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 81/189 (42%), Gaps = 37/189 (19%)
Query: 28 KANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAG--------AQNFKMA 79
+A + ILS L + L +VY A E+W L K+ DA ++KMA
Sbjct: 56 EATTLFVGCILSVLGDRLVEVYMHITDAKELWDALNTKFGATDASNDLYIMEQFHDYKMA 115
Query: 80 EDKEVTSQIHGFHMLINDL-----------KNENIILPESFM-TIDQLEKAKE--ITSKA 125
+++ V H + +L + I E + ++D EKA+E + SK
Sbjct: 116 DNRSVVEHAHEIQTMAKELELLKFRYCTQTQETGIRSVEGLIASLDVEEKAREKDVASKG 175
Query: 126 N---IVKNEAHPSKNQKPNKKFFKNKKTTFK----------KKKGNCYVCGKPGHFANKC 172
+ N H ++N+ K +K ++TT + + C+VCG+PGH A KC
Sbjct: 176 DGGQSTANVVHKAQNKSKGK--YKAQQTTNFKKKNNNNNSNQDERTCFVCGQPGHLARKC 233
Query: 173 RYRKGDHKP 181
RKG P
Sbjct: 234 PQRKGMKAP 242
>gi|21742763|emb|CAD40519.1| OSJNBa0023J03.5 [Oryza sativa Japonica Group]
Length = 1108
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/240 (26%), Positives = 99/240 (41%), Gaps = 66/240 (27%)
Query: 8 TEPPPDSDSENYEVLLQNWIKANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYI 67
+EPP + E N+ ++ + ++S L++ + DVY ++W L K+
Sbjct: 196 SEPPLSPEEE------ANFEASDCLFCGALISVLADNIVDVYMHMPSRKDMWDALEAKFG 249
Query: 68 IEDAGAQ--------NFKMAEDKEVTSQIHGFHMLINDLKNENIILPESF---------- 109
+ D G++ ++KM +D+ V Q H ML +L+N N LP+ F
Sbjct: 250 VSDTGSELYVMEQFYDYKMVDDRSVVEQAHEIQMLAKELENNNCELPDKFVAGGIIAKLP 309
Query: 110 -------------------------MTIDQLEKAKEITSK-------ANIV-KNEAHPSK 136
+ +++ +AK++ K AN+V K H S
Sbjct: 310 PSWSDFATSLKHKRQEFSVSDLIGSLGVEEKARAKDVRGKKVEGGSSANMVQKKNPHASH 369
Query: 137 NQKPNKKFFKNKKTT------FKKKKGNCYVCGKPGHFANKCRYRKGDHKPPKANLVDGE 190
N K K K K T K KG+C+V GK GH+A C RK D K AN+V E
Sbjct: 370 NNKKVKSDVKPKAATNFKKKGKGKAKGDCFVYGKYGHWAKDCPERK-DRK--SANMVISE 426
>gi|116317837|emb|CAH65871.1| OSIGBa0103I21.4 [Oryza sativa Indica Group]
Length = 964
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 88/215 (40%), Gaps = 62/215 (28%)
Query: 35 STILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQ--------NFKMAEDKEVTS 86
++S L++ + DVY +W L K+ + DAG++ ++KM +D+ V
Sbjct: 33 GALISVLADNIVDVYMHMPSGKNMWDALEAKFGVSDAGSELYVMEQFYDYKMVDDRSVVE 92
Query: 87 QIHGFHMLINDLKNENIILPESFMT------------------------------IDQL- 115
Q H ML +L+N N LP+ F+ I L
Sbjct: 93 QAHEIQMLAKELENNNYELPDKFVAGGIIAKLPHSWSDFATSLKHKRQEFSVTDLIGSLG 152
Query: 116 --EKAK---------EITSKANIV-KNEAHPSKN---QKPNKKFFKNKKTTF-----KKK 155
EKA+ E S AN+V K H S N +K T F K
Sbjct: 153 VEEKARAKDNRGKNIEGGSSANLVQKKNPHASHNNNKKKVKPDVKPKATTNFKKKGKGKA 212
Query: 156 KGNCYVCGKPGHFANKCRYRKGDHKPPKANLVDGE 190
KG+C+VCGKPGH+A C RK D K AN+V E
Sbjct: 213 KGDCFVCGKPGHWAKNCPDRK-DKK--SANMVISE 244
>gi|13129472|gb|AAK13130.1|AC083945_5 Putative gag-pol polyprotein [Oryza sativa Japonica Group]
Length = 1363
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 84/208 (40%), Gaps = 63/208 (30%)
Query: 34 RSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQNFKMAEDKEVTSQIHGFHM 93
R ++S L+N + DVY ++W L K F+M +D+ V Q H M
Sbjct: 235 REALISVLANNIVDVYMHIPSGKDMWGVLEAK----------FEMVDDRSVVEQAHEIQM 284
Query: 94 LINDLKNENIILPESF-----------------------------------MTIDQLEKA 118
LI +L+N + LP+ F + I++ +A
Sbjct: 285 LIKELENNHCELPDKFVAGGIIAKLPPSWSDFATSLKHKRQEFSVTDLIGSLGIEEKARA 344
Query: 119 K-------EITSKANIV-KNEAHPSKNQKPNKKFFKNKKTT-------FKKKKGNCYVCG 163
K E S AN+V KN H S N K K T K KG+C+VCG
Sbjct: 345 KDNRGKKIEGGSSANLVQKNNPHASHNNNKKVKPDVKPKATTNFKKKGKGKAKGDCFVCG 404
Query: 164 KPGHFANKCRYRKGDHKPPKANLVDGED 191
KPGH+A C RK D K AN+V E+
Sbjct: 405 KPGHWAKDCPERK-DKK--SANMVISEE 429
>gi|108711148|gb|ABF98943.1| retrotransposon protein, putative, unclassified, expressed [Oryza
sativa Japonica Group]
Length = 1460
Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 52/206 (25%), Positives = 81/206 (39%), Gaps = 67/206 (32%)
Query: 37 ILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGA--------QNFKMAEDKEVTSQI 88
ILS L + L +VY A E+W L K+ DA ++KMA+++ V Q
Sbjct: 65 ILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMADNRSVVEQA 124
Query: 89 HGFHMLINDLKNENIILPESFM---------------------------------TIDQL 115
H + +L+ +LP+ F+ ++D
Sbjct: 125 HEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYSVEGLIASLDVE 184
Query: 116 EKAKEI---------TSKANIVKNEAHPSKNQKPNKKFFKNKKTTFK-----------KK 155
EKA+E S AN+V H ++N+ K +K ++TT +
Sbjct: 185 EKAREKDAASKGDGGQSSANVV----HKAQNKSKGK--YKAQQTTNFKKQKKNNNNPNQD 238
Query: 156 KGNCYVCGKPGHFANKCRYRKGDHKP 181
+ C+VCG+ GH A KC RKG P
Sbjct: 239 ERTCFVCGQVGHLARKCPQRKGMKAP 264
>gi|147838519|emb|CAN69855.1| hypothetical protein VITISV_041230 [Vitis vinifera]
Length = 1236
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 81/199 (40%), Gaps = 55/199 (27%)
Query: 63 RKKYIIEDAGAQNFKMAEDKEVTSQIHGFHMLINDLKNENIILPESFM------------ 110
RKK ++ ++FK ++K + QIH +++N LK I L +F
Sbjct: 66 RKKREEDELICRDFKCFDEKPLLPQIHELQVIVNKLKVLKIELXXAFQVGAIVAKLPSSW 125
Query: 111 --------------TIDQLEKAKEI-----------------TSKANIVKNEAHP----- 134
++++++K I T+KAN V HP
Sbjct: 126 KGYRKRIXHKSEDYSLEEIQKHLXIEEESRSRDKMVEESNXGTNKANAVSKXNHPRXKNN 185
Query: 135 -SKNQKPNKKFFKNKKTTFKKKKGNCYVCGKPGHFANKCRYRKGDHKPPKANLVDGEDII 193
K N K + FK KKG C+VCGKP H+ +CRYRK D K N +D E
Sbjct: 186 NDKXNSGNYMSPKKNQEQFKGKKGPCFVCGKPEHYVRECRYRK-DQKGAVVNAIDEE--- 241
Query: 194 VAVVVTQENMVAAKGKKNG 212
++ T ++ +GK G
Sbjct: 242 --IIATLSDVCVVQGKVQG 258
>gi|147767446|emb|CAN62437.1| hypothetical protein VITISV_010848 [Vitis vinifera]
Length = 622
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 38/57 (66%), Gaps = 8/57 (14%)
Query: 62 LRKKYIIEDAGAQ--------NFKMAEDKEVTSQIHGFHMLINDLKNENIILPESFM 110
+ KKY +ED G Q NF+M D++V+SQIH +H+LINDL E+I LPE F+
Sbjct: 1 MNKKYSLEDXGTQKYAIENFKNFQMTXDRDVSSQIHDYHLLINDLAIEDIKLPEPFV 57
>gi|38344873|emb|CAE01299.2| OSJNBa0020P07.16 [Oryza sativa Japonica Group]
Length = 1314
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 80/183 (43%), Gaps = 31/183 (16%)
Query: 28 KANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAG--------AQNFKMA 79
+A + ILS L + L +VY A E+W L K+ DA ++KMA
Sbjct: 56 EATTLFVGCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMA 115
Query: 80 EDKEVTSQIHGFHMLIN-----DLKNENIILPESFMTIDQLEKAKE--ITSKANIVKNEA 132
+++ V Q H + N K + + ++D EKA+E SK + ++ A
Sbjct: 116 DNRSVVEQAHEIQTMANFGTALKHKRQEYSVEGLIASLDVEEKAREKDAASKGDGGQSSA 175
Query: 133 ---HPSKNQKPNKKFFKNKKTTFK-----------KKKGNCYVCGKPGHFANKCRYRKGD 178
H ++N+ K +K ++TT + + C+VCG+ GH A KC RKG
Sbjct: 176 NVVHKAQNKSKGK--YKAQQTTNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQRKGM 233
Query: 179 HKP 181
P
Sbjct: 234 KAP 236
>gi|50080289|gb|AAT69624.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1401
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 81/195 (41%), Gaps = 57/195 (29%)
Query: 35 STILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQ--------NFKMAEDKEVTS 86
++S L++ + DVY ++W L K+ + DAG++ ++KM +D+ V
Sbjct: 215 GALISVLADNIVDVYMHMPSGKDMWDALEAKFGVSDAGSELYVMEQFYDYKMVDDRSVVE 274
Query: 87 QIHGFHMLINDLKNENIILPESF-----------------------------------MT 111
Q H ML +L+N N LP+ F +
Sbjct: 275 QAHEIQMLAKELENNNCELPDKFVAGGIIAKLPPSWSDFATSLKHKRQEFSVPDLIGSLG 334
Query: 112 IDQLEKAKEITSK-------ANIV-KNEAHPSKNQKPNKKFFKNKKTT------FKKKKG 157
+++ +AK++ K AN+V K H S N K K K K T K KG
Sbjct: 335 VEEKARAKDVRGKKVEGGSSANMVQKKNPHASHNNKKVKPDVKPKAATNFKKKGKGKTKG 394
Query: 158 NCYVCGKPGHFANKC 172
+C+VCGK GH+A C
Sbjct: 395 DCFVCGKSGHWAKDC 409
>gi|53981174|gb|AAV24814.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1289
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 85/211 (40%), Gaps = 59/211 (27%)
Query: 28 KANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAG--------AQNFKMA 79
+A + ILS L + L +VY A E+W L K+ DA ++KMA
Sbjct: 56 EATTLFVGCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIIEQFHDYKMA 115
Query: 80 EDKEVTSQIHGFHMLINDLKNENIILPESFM----------------------------- 110
+++ V Q H + +L+ +LP+ F+
Sbjct: 116 DNRSVIEQAHEIQTMAKELELRKCVLPDKFVAGCIIAKLPSSWRSFGTALKHKRQEYSVE 175
Query: 111 ----TIDQLEKAKE--ITSKANIVKNEA---HPSKNQKPNKKFFKNKKTTFK-------- 153
++D EKA+E SK + ++ A H ++N+ K +K ++TT
Sbjct: 176 GLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK--YKAQQTTNFKKQKKNNN 233
Query: 154 ---KKKGNCYVCGKPGHFANKCRYRKGDHKP 181
+ + C+VCG+ GH A KC RKG P
Sbjct: 234 NPNQDERTCFVCGQVGHLARKCPQRKGMKAP 264
>gi|77555759|gb|ABA98555.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1361
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 54/225 (24%), Positives = 89/225 (39%), Gaps = 60/225 (26%)
Query: 28 KANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAG--------AQNFKMA 79
+A + ILS L + L +VY A E+W L K+ DA ++KMA
Sbjct: 141 EATTLFVGCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMA 200
Query: 80 EDKEVTSQIHGFHMLINDLKNENIILPESFM----------------------------- 110
+++ V Q H + +L+ +LP+ F+
Sbjct: 201 DNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYSVE 260
Query: 111 ----TIDQLEKAKE--ITSKANIVKNEA---HPSKNQKPNKKFFKNKKTTFK-------- 153
++D EKA+E SK + ++ A H ++N+ K +K ++TT
Sbjct: 261 GLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK--YKAQQTTNFKKQKKNNN 318
Query: 154 ---KKKGNCYVCGKPGHFANKCRYRKGDHKPPKANLVDGEDIIVA 195
+ + C+VCG+ GH A KC RKG K P D+ +
Sbjct: 319 NPNQDERTCFVCGQVGHLARKCPQRKG-MKAPAGQTSKSADVTIG 362
>gi|48475093|gb|AAT44162.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1302
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 84/215 (39%), Gaps = 67/215 (31%)
Query: 28 KANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAG--------AQNFKMA 79
+A + ILS L + L +VY A E+W L K+ DA ++KMA
Sbjct: 56 EATTLFVGCILSVLGDRLVEVYMHMTDANELWDALNTKFGATDASNDLYIMEQFHDYKMA 115
Query: 80 EDKEVTSQIHGFHMLINDLKNENIILPESFM----------------------------- 110
+++ V Q H + +L+ +LP+ F+
Sbjct: 116 DNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPSSWRSFGTALKHKRQEYSVE 175
Query: 111 ----TIDQLEKAKE---------ITSKANIVKNEAHPSKNQKPNKKFFKNKKTTFK---- 153
++D EKA+E S AN+V H ++N+ K +K ++TT
Sbjct: 176 GLIASLDVEEKAREKDAASKDDGGQSSANVV----HKAQNKSKGK--YKAQQTTNFKKQK 229
Query: 154 -------KKKGNCYVCGKPGHFANKCRYRKGDHKP 181
+ + C+VCG+ GH A KC RKG P
Sbjct: 230 KNNNNPNQDERTCFVCGQVGHLARKCSQRKGMKAP 264
>gi|108862766|gb|ABA98797.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1243
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 85/209 (40%), Gaps = 55/209 (26%)
Query: 28 KANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAG--------AQNFKMA 79
+A + ILS L + L +VY A E+W L K+ DA ++KMA
Sbjct: 56 EATTLFVGCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMA 115
Query: 80 EDKEVTSQIHGFHMLINDLKNENIILPESFM----------------------------- 110
++ V Q H + +L+ +LP+ F+
Sbjct: 116 DNHSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYSVE 175
Query: 111 ----TIDQLEKAKE--ITSKANIVKNEAHP-SKNQKPNKKFFKNKKTTFK---------- 153
++D EKA+E SK + ++ A+ K Q +K+ +K ++TT
Sbjct: 176 GLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKEKYKAQQTTNFKKQKKNNNNP 235
Query: 154 -KKKGNCYVCGKPGHFANKCRYRKGDHKP 181
+ + C+VCG+ GH A KC +RKG P
Sbjct: 236 NQDERTCFVCGQVGHLARKCPHRKGMKAP 264
>gi|38344663|emb|CAE02325.2| OSJNBb0112E13.7 [Oryza sativa Japonica Group]
Length = 1342
Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 86/211 (40%), Gaps = 59/211 (27%)
Query: 28 KANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAG--------AQNFKMA 79
+A + ILS L + L +VY A E+W L K+ DA ++KMA
Sbjct: 56 EATTLFVGCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMA 115
Query: 80 EDKEVTSQIHGFHMLINDLKNENIILPESFM----------------------------- 110
+++ V Q H + +L+ +LP+ F+
Sbjct: 116 DNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYSVE 175
Query: 111 ----TIDQLEKAKE--ITSKANIVKNEA---HPSKNQKPNKKFFKNKKTTFK-------- 153
++D EKA+E SK++ ++ A H ++N+ K +K ++TT
Sbjct: 176 GLIASLDVEEKAREKDAASKSDGGQSSANVVHKAQNKSKGK--YKAQQTTNFKKQKKNNN 233
Query: 154 ---KKKGNCYVCGKPGHFANKCRYRKGDHKP 181
+ + C+VCG+ GH A KC RKG P
Sbjct: 234 NPNQDERTCFVCGQVGHLARKCPQRKGMKAP 264
>gi|55733934|gb|AAV59441.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1225
Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 85/211 (40%), Gaps = 59/211 (27%)
Query: 28 KANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAG--------AQNFKMA 79
+A + ILS L + L +VY A E+W L K+ DA ++KMA
Sbjct: 56 EATTLFVGCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMA 115
Query: 80 EDKEVTSQIHGFHMLINDLKNENIILPESFM----------------------------- 110
+++ V Q H + +L+ +LP+ F+
Sbjct: 116 DNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYSVE 175
Query: 111 ----TIDQLEKAKE--ITSKANIVKNEA---HPSKNQKPNKKFFKNKKTTFK-------- 153
++D EKA+E SK + ++ A H ++N+ K +K ++TT
Sbjct: 176 GLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK--YKAQQTTNFKKQKKNNN 233
Query: 154 ---KKKGNCYVCGKPGHFANKCRYRKGDHKP 181
+ + C+VCG+ GH A KC RKG P
Sbjct: 234 NPNQDERTCFVCGQVGHLARKCPQRKGMKAP 264
>gi|49328150|gb|AAT58846.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1229
Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 85/211 (40%), Gaps = 59/211 (27%)
Query: 28 KANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAG--------AQNFKMA 79
+A + ILS L + L +VY A E+W L K+ DA ++KMA
Sbjct: 56 EATTLFVGCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMA 115
Query: 80 EDKEVTSQIHGFHMLINDLKNENIILPESFM----------------------------- 110
+++ V Q H + +L+ +LP+ F+
Sbjct: 116 DNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYSVE 175
Query: 111 ----TIDQLEKAKE--ITSKANIVKNEA---HPSKNQKPNKKFFKNKKTTFK-------- 153
++D EKA+E SK + ++ A H ++N+ K +K ++TT
Sbjct: 176 GLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK--YKAQQTTNFKKQKKNNN 233
Query: 154 ---KKKGNCYVCGKPGHFANKCRYRKGDHKP 181
+ + C+VCG+ GH A KC RKG P
Sbjct: 234 NPNQDERTCFVCGQVGHLARKCPQRKGMKAP 264
>gi|38346534|emb|CAE04541.2| OSJNBa0040D17.9 [Oryza sativa Japonica Group]
Length = 1319
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 85/211 (40%), Gaps = 59/211 (27%)
Query: 28 KANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAG--------AQNFKMA 79
+A + ILS L + L +VY A E+W L K+ DA ++KMA
Sbjct: 56 EATTLFVGCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMA 115
Query: 80 EDKEVTSQIHGFHMLINDLKNENIILPESFM----------------------------- 110
+++ V Q H + +L+ +LP+ F+
Sbjct: 116 DNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYSVE 175
Query: 111 ----TIDQLEKAKE--ITSKANIVKNEA---HPSKNQKPNKKFFKNKKTTFK-------- 153
++D EKA+E SK + ++ A H ++N+ K +K ++TT
Sbjct: 176 GLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK--YKAQQTTNFKKQKKNNN 233
Query: 154 ---KKKGNCYVCGKPGHFANKCRYRKGDHKP 181
+ + C+VCG+ GH A KC RKG P
Sbjct: 234 NPNQDERTCFVCGQVGHLARKCPQRKGMKAP 264
>gi|147767541|emb|CAN66710.1| hypothetical protein VITISV_006397 [Vitis vinifera]
Length = 1105
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 55/104 (52%), Gaps = 12/104 (11%)
Query: 115 LEKAKEITSKANIVKNEAHP---SKNQKPNKKFF---KNKKTTFKKKKGNCYVCGKPGHF 168
+E++ T+KAN V H + N+K N + K + FK KKG +VCGKPGH+
Sbjct: 2 VEESNGGTNKANAVSKANHSRGKNNNEKKNSGNYMSPKKNQEQFKGKKGPYFVCGKPGHY 61
Query: 169 ANKCRYRKGDHKPPKANLVDGEDIIVAVVVTQENMVAAKGKKNG 212
A +CRYRK D K N +D E ++ T ++ +GK G
Sbjct: 62 ARECRYRK-DQKRVVVNAIDEE-----IIATLSDVCVVQGKVQG 99
>gi|32487304|emb|CAE05795.1| OSJNBb0046K02.5 [Oryza sativa Japonica Group]
Length = 1356
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 86/211 (40%), Gaps = 59/211 (27%)
Query: 28 KANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAG--------AQNFKMA 79
+A + ILS L + L +VY A E+W L K+ DA ++KMA
Sbjct: 56 EATTLFVGCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMA 115
Query: 80 EDKEVTSQIHGFHMLINDLKNENIILPESFM----------------------------- 110
+++ V Q H + +L+ +LP+ F+
Sbjct: 116 DNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYSVE 175
Query: 111 ----TIDQLEKAKE--ITSKANIVKNEA---HPSKNQKPNKKFFKNKKTTFK-------- 153
++D EKA+E SK++ ++ A H ++N+ K +K ++TT
Sbjct: 176 GLIASLDVEEKAREKDAASKSDGGQSSANVVHKAQNKSKGK--YKAQQTTNFKKQKKNNN 233
Query: 154 ---KKKGNCYVCGKPGHFANKCRYRKGDHKP 181
+ + C+VCG+ GH A KC RKG P
Sbjct: 234 NPNQDERTCFVCGQVGHLARKCPQRKGMKAP 264
>gi|24431600|gb|AAN61480.1| Putative polyprotein from transposon TNT [Oryza sativa Japonica
Group]
Length = 1911
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 85/211 (40%), Gaps = 59/211 (27%)
Query: 28 KANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAG--------AQNFKMA 79
+A + ILS L + L +VY A E+W L K+ DA ++KMA
Sbjct: 56 EATTLFVGCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMA 115
Query: 80 EDKEVTSQIHGFHMLINDLKNENIILPESFM----------------------------- 110
+++ V Q H + +L+ +LP+ F+
Sbjct: 116 DNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYSVE 175
Query: 111 ----TIDQLEKAKE--ITSKANIVKNEA---HPSKNQKPNKKFFKNKKTTFK-------- 153
++D EKA+E SK + ++ A H ++N+ K +K ++TT
Sbjct: 176 GLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK--YKAQQTTNFKKQKKNNN 233
Query: 154 ---KKKGNCYVCGKPGHFANKCRYRKGDHKP 181
+ + C+VCG+ GH A KC RKG P
Sbjct: 234 NPNQDERTCFVCGQVGHLARKCPQRKGMKAP 264
>gi|38346634|emb|CAD40744.2| OSJNBa0072D21.4 [Oryza sativa Japonica Group]
Length = 1319
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 85/211 (40%), Gaps = 59/211 (27%)
Query: 28 KANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAG--------AQNFKMA 79
+A + ILS L + L +VY A E+W L K+ DA ++KMA
Sbjct: 56 EATTLFVGCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMA 115
Query: 80 EDKEVTSQIHGFHMLINDLKNENIILPESFM----------------------------- 110
+++ V Q H + +L+ +LP+ F+
Sbjct: 116 DNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYSVE 175
Query: 111 ----TIDQLEKAKE--ITSKANIVKNEA---HPSKNQKPNKKFFKNKKTTFK-------- 153
++D EKA+E SK + ++ A H ++N+ K +K ++TT
Sbjct: 176 GLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK--YKAQQTTNFKKQKKNNN 233
Query: 154 ---KKKGNCYVCGKPGHFANKCRYRKGDHKP 181
+ + C+VCG+ GH A KC RKG P
Sbjct: 234 NPNQDERTCFVCGQVGHLARKCPQRKGMKAP 264
>gi|108862291|gb|ABA96637.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 817
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 73/169 (43%), Gaps = 30/169 (17%)
Query: 34 RSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQNFKMAEDKEVTSQIHGFHM 93
R ++S L++ + DVY ++W L K+ + DAG + Q H M
Sbjct: 81 RGALISVLADNIVDVYMHTPSGKDMWDALEAKFGVSDAGME------------QAHEIQM 128
Query: 94 LINDLKNENIILPESFMTIDQLEKAKEITS---------KANIVKNEAHPSKNQKPNKKF 144
L +L+N N LP+ F+ + K S + K H S N K K
Sbjct: 129 LAKELENNNCELPDKFVAGGIIAKLPPSWSDFATSLKHKRQEFSKKNPHASHNNKKVKPD 188
Query: 145 FKNKKTT------FKKKKGNCYVCGKPGHFANKCRYRKGDHKPPKANLV 187
K K TT K KG+C+VCGK GH+A C RK D K AN+V
Sbjct: 189 VKPKATTNFKKKGKGKAKGDCFVCGKSGHWAKDCPERK-DRK--SANMV 234
>gi|54287603|gb|AAV31347.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1059
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 85/211 (40%), Gaps = 59/211 (27%)
Query: 28 KANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAG--------AQNFKMA 79
+A + ILS L + L +VY A E+W L K+ DA ++KMA
Sbjct: 179 EATTLFVGCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMKQFHDYKMA 238
Query: 80 EDKEVTSQIHGFHMLINDLKNENIILPESFM----------------------------- 110
+++ V Q H + +L+ +LP+ F+
Sbjct: 239 DNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIVKLPPSWRSFGTALKHKRQEYSVE 298
Query: 111 ----TIDQLEKAKE--ITSKANIVKNEA---HPSKNQKPNKKFFKNKKTTFK-------- 153
++D EKA+E SK + ++ A H ++N+ K +K ++TT
Sbjct: 299 GLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK--YKAQQTTNFKKQKKNNN 356
Query: 154 ---KKKGNCYVCGKPGHFANKCRYRKGDHKP 181
+ + C+VCG+ GH A KC RKG P
Sbjct: 357 NPNQDERTCFVCGQVGHLARKCPQRKGMKAP 387
>gi|108862795|gb|ABA99473.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1287
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 85/211 (40%), Gaps = 59/211 (27%)
Query: 28 KANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAG--------AQNFKMA 79
+A + ILS L + L +VY A E+W L K+ DA ++KMA
Sbjct: 17 EATTLFVGCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMA 76
Query: 80 EDKEVTSQIHGFHMLINDLKNENIILPESFM----------------------------- 110
+++ V Q H + +L+ +LP+ F+
Sbjct: 77 DNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYSVE 136
Query: 111 ----TIDQLEKAKE--ITSKANIVKNEA---HPSKNQKPNKKFFKNKKTTFK-------- 153
++D EKA+E SK + ++ A H ++N+ K +K ++TT
Sbjct: 137 GLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK--YKAQQTTNFKKQKKNNN 194
Query: 154 ---KKKGNCYVCGKPGHFANKCRYRKGDHKP 181
+ + C+VCG+ GH A KC RKG P
Sbjct: 195 NPNQDERTCFVCGQVGHLARKCPQRKGMKAP 225
>gi|108708907|gb|ABF96702.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1518
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 85/211 (40%), Gaps = 59/211 (27%)
Query: 28 KANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAG--------AQNFKMA 79
+A + ILS L + L +VY A E+W L K+ DA ++KMA
Sbjct: 272 EATTLFVGCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMA 331
Query: 80 EDKEVTSQIHGFHMLINDLKNENIILPESFM----------------------------- 110
+++ V Q H + +L+ +LP+ F+
Sbjct: 332 DNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYSVE 391
Query: 111 ----TIDQLEKAKE--ITSKANIVKNEA---HPSKNQKPNKKFFKNKKTTFK-------- 153
++D EKA+E SK + ++ A H ++N+ K +K ++TT
Sbjct: 392 GLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK--YKAQQTTNFKKQKKNNN 449
Query: 154 ---KKKGNCYVCGKPGHFANKCRYRKGDHKP 181
+ + C+VCG+ GH A KC RKG P
Sbjct: 450 NPNQDERTCFVCGQVGHLARKCPQRKGMKAP 480
>gi|30089754|gb|AAP20858.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group]
Length = 1302
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 85/211 (40%), Gaps = 59/211 (27%)
Query: 28 KANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAG--------AQNFKMA 79
+A + ILS L + L +VY A E+W L K+ DA ++KMA
Sbjct: 56 EATTLFVGCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMA 115
Query: 80 EDKEVTSQIHGFHMLINDLKNENIILPESFM----------------------------- 110
+++ V Q H + +L+ +LP+ F+
Sbjct: 116 DNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYSVE 175
Query: 111 ----TIDQLEKAKE--ITSKANIVKNEA---HPSKNQKPNKKFFKNKKTTFK-------- 153
++D EKA+E SK + ++ A H ++N+ K +K ++TT
Sbjct: 176 GLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK--YKAQQTTNFKKQKKNNN 233
Query: 154 ---KKKGNCYVCGKPGHFANKCRYRKGDHKP 181
+ + C+VCG+ GH A KC RKG P
Sbjct: 234 NPNQDERTCFVCGQVGHLARKCPQRKGMKAP 264
>gi|38345215|emb|CAD40198.2| OSJNBb0043H09.7 [Oryza sativa Japonica Group]
Length = 1302
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 85/211 (40%), Gaps = 59/211 (27%)
Query: 28 KANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAG--------AQNFKMA 79
+A + ILS L + L +VY A E+W L K+ DA ++KMA
Sbjct: 56 EATTLFVGCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMA 115
Query: 80 EDKEVTSQIHGFHMLINDLKNENIILPESFM----------------------------- 110
+++ V Q H + +L+ +LP+ F+
Sbjct: 116 DNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYSVE 175
Query: 111 ----TIDQLEKAKE--ITSKANIVKNEA---HPSKNQKPNKKFFKNKKTTFK-------- 153
++D EKA+E SK + ++ A H ++N+ K +K ++TT
Sbjct: 176 GLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK--YKAQQTTNFKKQKKNNN 233
Query: 154 ---KKKGNCYVCGKPGHFANKCRYRKGDHKP 181
+ + C+VCG+ GH A KC RKG P
Sbjct: 234 NPNQDERTCFVCGQVGHLARKCPQRKGMKAP 264
>gi|37718811|gb|AAR01682.1| putative gag and pol protein [Oryza sativa Japonica Group]
Length = 1302
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 85/211 (40%), Gaps = 59/211 (27%)
Query: 28 KANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAG--------AQNFKMA 79
+A + ILS L + L +VY A E+W L K+ DA ++KMA
Sbjct: 56 EATTLFVGCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMA 115
Query: 80 EDKEVTSQIHGFHMLINDLKNENIILPESFM----------------------------- 110
+++ V Q H + +L+ +LP+ F+
Sbjct: 116 DNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYSVE 175
Query: 111 ----TIDQLEKAKE--ITSKANIVKNEA---HPSKNQKPNKKFFKNKKTTFK-------- 153
++D EKA+E SK + ++ A H ++N+ K +K ++TT
Sbjct: 176 GLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK--YKAQQTTNFKKQKKNNN 233
Query: 154 ---KKKGNCYVCGKPGHFANKCRYRKGDHKP 181
+ + C+VCG+ GH A KC RKG P
Sbjct: 234 NPNQDERTCFVCGQVGHLARKCPQRKGMKAP 264
>gi|37718845|gb|AAR01716.1| putative Gag and Pol polyprotein [Oryza sativa Japonica Group]
Length = 1302
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 85/211 (40%), Gaps = 59/211 (27%)
Query: 28 KANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAG--------AQNFKMA 79
+A + ILS L + L +VY A E+W L K+ DA ++KMA
Sbjct: 56 EATTLFVGCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMA 115
Query: 80 EDKEVTSQIHGFHMLINDLKNENIILPESFM----------------------------- 110
+++ V Q H + +L+ +LP+ F+
Sbjct: 116 DNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYSVE 175
Query: 111 ----TIDQLEKAKE--ITSKANIVKNEA---HPSKNQKPNKKFFKNKKTTFK-------- 153
++D EKA+E SK + ++ A H ++N+ K +K ++TT
Sbjct: 176 GLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK--YKAQQTTNFKKQKKNNN 233
Query: 154 ---KKKGNCYVCGKPGHFANKCRYRKGDHKP 181
+ + C+VCG+ GH A KC RKG P
Sbjct: 234 NPNQDERTCFVCGQVGHLARKCPQRKGMKAP 264
>gi|77555142|gb|ABA97938.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1320
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 85/211 (40%), Gaps = 59/211 (27%)
Query: 28 KANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAG--------AQNFKMA 79
+A + ILS L + L +VY A E+W L K+ DA ++KMA
Sbjct: 56 EATTLFVGCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMA 115
Query: 80 EDKEVTSQIHGFHMLINDLKNENIILPESFM----------------------------- 110
+++ V Q H + +L+ +LP+ F+
Sbjct: 116 DNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYSVE 175
Query: 111 ----TIDQLEKAKE--ITSKANIVKNEA---HPSKNQKPNKKFFKNKKTTFK-------- 153
++D EKA+E SK + ++ A H ++N+ K +K ++TT
Sbjct: 176 GLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK--YKAQQTTNFKKQKKNNN 233
Query: 154 ---KKKGNCYVCGKPGHFANKCRYRKGDHKP 181
+ + C+VCG+ GH A KC RKG P
Sbjct: 234 NPNQDERTCFVCGQVGHLARKCPQRKGMKAP 264
>gi|32488578|emb|CAE03086.1| OSJNBa0017B10.1 [Oryza sativa Japonica Group]
gi|38345937|emb|CAD41412.2| OSJNBb0078D11.12 [Oryza sativa Japonica Group]
Length = 1320
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 85/211 (40%), Gaps = 59/211 (27%)
Query: 28 KANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAG--------AQNFKMA 79
+A + ILS L + L +VY A E+W L K+ DA ++KMA
Sbjct: 56 EATTLFVGCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMA 115
Query: 80 EDKEVTSQIHGFHMLINDLKNENIILPESFM----------------------------- 110
+++ V Q H + +L+ +LP+ F+
Sbjct: 116 DNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYSVE 175
Query: 111 ----TIDQLEKAKE--ITSKANIVKNEA---HPSKNQKPNKKFFKNKKTTFK-------- 153
++D EKA+E SK + ++ A H ++N+ K +K ++TT
Sbjct: 176 GLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK--YKAQQTTNFKKQKKNNN 233
Query: 154 ---KKKGNCYVCGKPGHFANKCRYRKGDHKP 181
+ + C+VCG+ GH A KC RKG P
Sbjct: 234 NPNQDERTCFVCGQVGHLARKCPQRKGMKAP 264
>gi|108862657|gb|ABA98136.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1249
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 85/211 (40%), Gaps = 59/211 (27%)
Query: 28 KANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAG--------AQNFKMA 79
+A + ILS L + L +VY A E+W L K+ DA ++KMA
Sbjct: 56 EATTLFVGCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMA 115
Query: 80 EDKEVTSQIHGFHMLINDLKNENIILPESFM----------------------------- 110
+++ V Q H + +L+ +LP+ F+
Sbjct: 116 DNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYSVE 175
Query: 111 ----TIDQLEKAKE--ITSKANIVKNEA---HPSKNQKPNKKFFKNKKTTFK-------- 153
++D EKA+E SK + ++ A H ++N+ K +K ++TT
Sbjct: 176 GLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK--YKAQQTTNFKKQKKNNN 233
Query: 154 ---KKKGNCYVCGKPGHFANKCRYRKGDHKP 181
+ + C+VCG+ GH A KC RKG P
Sbjct: 234 NPNQDERTCFVCGQVGHLARKCPQRKGMKAP 264
>gi|50511444|gb|AAT77367.1| putative polyprotein [Oryza sativa Japonica Group]
gi|51854387|gb|AAU10767.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 1320
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 85/211 (40%), Gaps = 59/211 (27%)
Query: 28 KANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAG--------AQNFKMA 79
+A + ILS L + L +VY A E+W L K+ DA ++KMA
Sbjct: 56 EATTLFVGCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMA 115
Query: 80 EDKEVTSQIHGFHMLINDLKNENIILPESFM----------------------------- 110
+++ V Q H + +L+ +LP+ F+
Sbjct: 116 DNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYSVE 175
Query: 111 ----TIDQLEKAKE--ITSKANIVKNEA---HPSKNQKPNKKFFKNKKTTFK-------- 153
++D EKA+E SK + ++ A H ++N+ K +K ++TT
Sbjct: 176 GLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK--YKAQQTTNFKKQKKNNN 233
Query: 154 ---KKKGNCYVCGKPGHFANKCRYRKGDHKP 181
+ + C+VCG+ GH A KC RKG P
Sbjct: 234 NPNQDERTCFVCGQVGHLARKCPQRKGMKAP 264
>gi|77548605|gb|ABA91402.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 2027
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 85/211 (40%), Gaps = 59/211 (27%)
Query: 28 KANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAG--------AQNFKMA 79
+A + ILS L + L +VY A E+W L K+ DA ++KMA
Sbjct: 251 EATTLFVGCILSVLGDRLVEVYMHMTDAKELWYALNTKFGATDASNDLYIMEQFHDYKMA 310
Query: 80 EDKEVTSQIHGFHMLINDLKNENIILPESFM----------------------------- 110
+++ V Q H + +L+ +LP+ F+
Sbjct: 311 DNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYSVE 370
Query: 111 ----TIDQLEKAKE--ITSKANIVKNEA---HPSKNQKPNKKFFKNKKTTFK-------- 153
++D EKA+E SK + ++ A H ++N+ K +K ++TT
Sbjct: 371 GLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK--YKAQQTTNFKKQKKNNN 428
Query: 154 ---KKKGNCYVCGKPGHFANKCRYRKGDHKP 181
+ + C+VCG+ GH A KC RKG P
Sbjct: 429 NPNQDERTCFVCGQVGHLARKCPQRKGMKAP 459
>gi|32489064|emb|CAE03994.1| OSJNBb0089B03.8 [Oryza sativa Japonica Group]
Length = 1113
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 85/211 (40%), Gaps = 59/211 (27%)
Query: 28 KANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAG--------AQNFKMA 79
+A + ILS L + L +VY A E+W L K+ DA ++KMA
Sbjct: 25 EATTLFVGCILSGLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMA 84
Query: 80 EDKEVTSQIHGFHMLINDLKNENIILPESFM----------------------------- 110
+++ V Q H + +L+ +LP+ F+
Sbjct: 85 DNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYSVE 144
Query: 111 ----TIDQLEKAKE--ITSKANIVKNEA---HPSKNQKPNKKFFKNKKTTFK-------- 153
++D EKA+E SK + ++ A H ++N+ K +K ++TT
Sbjct: 145 GLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK--YKAQQTTNFKKQKKNNN 202
Query: 154 ---KKKGNCYVCGKPGHFANKCRYRKGDHKP 181
+ + C+VCG+ GH A KC RKG P
Sbjct: 203 NPNQDERTCFVCGQVGHLARKCPQRKGMKAP 233
>gi|10140704|gb|AAG13538.1|AC023240_11 putative gag-pol polyprotein [Oryza sativa Japonica Group]
Length = 1408
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 90/214 (42%), Gaps = 60/214 (28%)
Query: 34 RSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQ--------NFKMAEDKEVT 85
R ++S L++ + DVY ++ L K+ + DAG++ ++KM +D+ V
Sbjct: 172 RGALISVLADNIVDVYMHMPSGKDMRDALEAKFGVSDAGSELYVMEQFYDYKMVDDRSVV 231
Query: 86 SQIHGFHMLINDLKNENIILPESF-----------------------------------M 110
Q H ML +L+N N LP+ F +
Sbjct: 232 EQAHEIQMLAKELENNNCELPDKFVAGGIIAKLPPSWSDFATSLKHKRQEFSVPDLIGSL 291
Query: 111 TIDQLEKAKEITSK-------ANIV-KNEAHPSKNQKPNKKFFKNKKTT------FKKKK 156
+++ +AK++ K AN+V K H S N K K K K T K K
Sbjct: 292 GVEEKARAKDVRGKKVEGGSSANMVQKKNPHASHNNKKVKPDVKPKAATNFKKKSKGKAK 351
Query: 157 GNCYVCGKPGHFANKCRYRKGDHKPPKANLVDGE 190
G+C+VCGK GH+A C RK D K AN++ E
Sbjct: 352 GDCFVCGKSGHWAKDCPERK-DRK--SANMIISE 382
>gi|62734723|gb|AAX96832.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group]
Length = 1320
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 85/211 (40%), Gaps = 59/211 (27%)
Query: 28 KANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAG--------AQNFKMA 79
+A + ILS L + L +VY A E+W L K+ DA ++KMA
Sbjct: 56 EATTLFVGCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMA 115
Query: 80 EDKEVTSQIHGFHMLINDLKNENIILPESFM----------------------------- 110
+++ V Q H + +L+ +LP+ F+
Sbjct: 116 DNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYSVE 175
Query: 111 ----TIDQLEKAKE--ITSKANIVKNEA---HPSKNQKPNKKFFKNKKTTFK-------- 153
++D EKA+E SK + ++ A H ++N+ K +K ++TT
Sbjct: 176 GLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK--YKAQQTTNFKKQKKNNN 233
Query: 154 ---KKKGNCYVCGKPGHFANKCRYRKGDHKP 181
+ + C+VCG+ GH A KC RKG P
Sbjct: 234 NPNQDERTCFVCGQVGHLARKCPQRKGMKAP 264
>gi|50080271|gb|AAT69606.1| putative polyprotein [Oryza sativa Japonica Group]
gi|53749238|gb|AAU90098.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1320
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 85/211 (40%), Gaps = 59/211 (27%)
Query: 28 KANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAG--------AQNFKMA 79
+A + ILS L + L +VY A E+W L K+ DA ++KMA
Sbjct: 56 EATTLFVGCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMA 115
Query: 80 EDKEVTSQIHGFHMLINDLKNENIILPESFM----------------------------- 110
+++ V Q H + +L+ +LP+ F+
Sbjct: 116 DNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYSVE 175
Query: 111 ----TIDQLEKAKE--ITSKANIVKNEA---HPSKNQKPNKKFFKNKKTTFK-------- 153
++D EKA+E SK + ++ A H ++N+ K +K ++TT
Sbjct: 176 GLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK--YKAQQTTNFKKQKKNNN 233
Query: 154 ---KKKGNCYVCGKPGHFANKCRYRKGDHKP 181
+ + C+VCG+ GH A KC RKG P
Sbjct: 234 NPNQDERTCFVCGQVGHLARKCPQRKGMKAP 264
>gi|77548453|gb|ABA91250.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1320
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 85/211 (40%), Gaps = 59/211 (27%)
Query: 28 KANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAG--------AQNFKMA 79
+A + ILS L + L +VY A E+W L K+ DA ++KMA
Sbjct: 56 EATTLFVGCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMA 115
Query: 80 EDKEVTSQIHGFHMLINDLKNENIILPESFM----------------------------- 110
+++ V Q H + +L+ +LP+ F+
Sbjct: 116 DNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYSVE 175
Query: 111 ----TIDQLEKAKE--ITSKANIVKNEA---HPSKNQKPNKKFFKNKKTTFK-------- 153
++D EKA+E SK + ++ A H ++N+ K +K ++TT
Sbjct: 176 GLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK--YKAQQTTNFKKQKKNNN 233
Query: 154 ---KKKGNCYVCGKPGHFANKCRYRKGDHKP 181
+ + C+VCG+ GH A KC RKG P
Sbjct: 234 NPNQDERTCFVCGQVGHLARKCPQRKGMKAP 264
>gi|32492223|emb|CAE03674.1| OSJNBa0042N22.18 [Oryza sativa Japonica Group]
gi|38567758|emb|CAE76045.1| B1248C03.4 [Oryza sativa Japonica Group]
Length = 853
Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 66/237 (27%), Positives = 102/237 (43%), Gaps = 65/237 (27%)
Query: 11 PPDSDSENYEVLLQNWIKANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIED 70
PP S E EV+ + ++ + R +++ L++ + D+Y ++W L K+ + D
Sbjct: 14 PPLSPKE--EVMFE---ASDCLFRGALINVLADNIVDMYMHMPLGKDMWDALEAKFGVSD 68
Query: 71 AGAQ--------NFKMAEDKEVTSQIHGFHMLINDLKNENIILPESFM------------ 110
A ++ ++KM +D+ V Q H ML +L+N N LP+ F+
Sbjct: 69 ASSELYVMEQFFDYKMVDDRSVVEQAHEIQMLAKELENNNCELPDKFVARGIIAKLPPSW 128
Query: 111 --------------TIDQL-------EKAK---------EITSKANIV-KNEAHPSKNQK 139
++ L EKA+ E S AN+V K H S N K
Sbjct: 129 SDFATSLKRKRQEFSVSDLIGSLGVEEKARAKDNRGKKVEGGSSANMVQKKNPHASHNNK 188
Query: 140 PNKKFFKNKKTT------FKKKKGNCYVCGKPGHFANKCRYRKGDHKPPKANLVDGE 190
K K K TT K KG+C++CGK G++A C RK D K AN+V E
Sbjct: 189 KVKPDVKPKATTNFKKKGKGKAKGDCFMCGKSGYWAKDCPERK-DRK--SANMVISE 242
>gi|39545722|emb|CAD40924.3| OSJNBa0033G16.12 [Oryza sativa Japonica Group]
Length = 1320
Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 85/211 (40%), Gaps = 59/211 (27%)
Query: 28 KANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAG--------AQNFKMA 79
+A + ILS L + L +VY A E+W L K+ DA ++KMA
Sbjct: 56 EATTLFVGCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMA 115
Query: 80 EDKEVTSQIHGFHMLINDLKNENIILPESFM----------------------------- 110
+++ V Q H + +L+ +LP+ F+
Sbjct: 116 DNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYSVE 175
Query: 111 ----TIDQLEKAKE--ITSKANIVKNEA---HPSKNQKPNKKFFKNKKTTFK-------- 153
++D EKA+E SK + ++ A H ++N+ K +K ++TT
Sbjct: 176 GLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK--YKAQQTTNFKKQKKNKN 233
Query: 154 ---KKKGNCYVCGKPGHFANKCRYRKGDHKP 181
+ + C+VCG+ GH A KC RKG P
Sbjct: 234 NPNQDERTCFVCGQVGHLARKCPQRKGMKAP 264
>gi|62734114|gb|AAX96223.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group]
gi|77549882|gb|ABA92679.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1302
Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 86/211 (40%), Gaps = 59/211 (27%)
Query: 28 KANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAG--------AQNFKMA 79
+A + ILS L + L +VY A ++W L K+ DA ++KMA
Sbjct: 56 EATTLFVGCILSVLGDRLVEVYMHMTDAKKLWDALNTKFGATDASNDLYIMEQFHDYKMA 115
Query: 80 EDKEVTSQIHGFHMLINDLKNENIILPESFM----------------------------- 110
+++ V Q H + +L+ +LP+ F+
Sbjct: 116 DNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYSVE 175
Query: 111 ----TIDQLEKAKE--ITSKANIVKNEA---HPSKNQKPNKKFFKNKKTTFK-------- 153
++D EKA+E + SK + ++ A H ++N+ K +K ++TT
Sbjct: 176 GLIASLDVEEKAREKDVASKGDGGQSSANVVHKAQNKSKGK--YKAQQTTNFKKQKKNNN 233
Query: 154 ---KKKGNCYVCGKPGHFANKCRYRKGDHKP 181
+ + C+VCG+ GH A KC RKG P
Sbjct: 234 NPNQDERTCFVCGQVGHLARKCPQRKGMKAP 264
>gi|62701755|gb|AAX92828.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group]
gi|62733724|gb|AAX95834.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group]
gi|77550359|gb|ABA93156.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1277
Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 85/211 (40%), Gaps = 59/211 (27%)
Query: 28 KANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAG--------AQNFKMA 79
+A + ILS L + L +VY A E+W L K+ DA ++KMA
Sbjct: 56 EATTLFVGCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMA 115
Query: 80 EDKEVTSQIHGFHMLINDLKNENIILPESFM----------------------------- 110
+++ V Q H + +L+ +LP+ F+
Sbjct: 116 DNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYSVE 175
Query: 111 ----TIDQLEKAKE--ITSKANIVKNEA---HPSKNQKPNKKFFKNKKTTFK-------- 153
++D EKA+E SK + ++ A H ++N+ K +K ++TT
Sbjct: 176 GLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK--YKAQQTTNFKKQKKNKN 233
Query: 154 ---KKKGNCYVCGKPGHFANKCRYRKGDHKP 181
+ + C+VCG+ GH A KC RKG P
Sbjct: 234 NPNQDERTCFVCGQVGHLARKCPQRKGMKAP 264
>gi|108710670|gb|ABF98465.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1210
Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 85/211 (40%), Gaps = 59/211 (27%)
Query: 28 KANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAG--------AQNFKMA 79
+A + ILS L + L +VY A E+W L K+ DA ++KMA
Sbjct: 56 EATTLFVGCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMA 115
Query: 80 EDKEVTSQIHGFHMLINDLKNENIILPESFM----------------------------- 110
+++ V Q H + +L+ +LP+ F+
Sbjct: 116 DNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYSVE 175
Query: 111 ----TIDQLEKAKE--ITSKANIVKNEA---HPSKNQKPNKKFFKNKKTTFK-------- 153
++D EKA+E SK + ++ A H ++N+ K +K ++TT
Sbjct: 176 GLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK--YKAQQTTNFKKQKKNNN 233
Query: 154 ---KKKGNCYVCGKPGHFANKCRYRKGDHKP 181
+ + C+VCG+ GH A KC RKG P
Sbjct: 234 NPNQDERTCFVCGQVGHLARKCPQRKGMKAP 264
>gi|108863988|gb|ABA91445.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1320
Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 85/211 (40%), Gaps = 59/211 (27%)
Query: 28 KANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAG--------AQNFKMA 79
+A + ILS L + L +VY A E+W L K+ DA ++KMA
Sbjct: 56 EATTLFVGCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMA 115
Query: 80 EDKEVTSQIHGFHMLINDLKNENIILPESFM----------------------------- 110
+++ V Q H + +L+ +LP+ F+
Sbjct: 116 DNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYSVE 175
Query: 111 ----TIDQLEKAKE--ITSKANIVKNEA---HPSKNQKPNKKFFKNKKTTFK-------- 153
++D EKA+E SK + ++ A H ++N+ K +K ++TT
Sbjct: 176 GLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSNGK--YKAQQTTNFKKQKKNNN 233
Query: 154 ---KKKGNCYVCGKPGHFANKCRYRKGDHKP 181
+ + C+VCG+ GH A KC RKG P
Sbjct: 234 NPNQDERTCFVCGQVGHLARKCPQRKGMKAP 264
>gi|38346883|emb|CAE03908.2| OSJNBb0015G09.2 [Oryza sativa Japonica Group]
Length = 1039
Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 75/188 (39%), Gaps = 34/188 (18%)
Query: 28 KANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAG--------AQNFKMA 79
+A + ILS L + L +VY A E+W L K+ DA ++KMA
Sbjct: 80 EATTLFVGCILSILGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMA 139
Query: 80 EDKEVTSQIHGFHMLINDLKNENIILPESFM---TIDQL------------EKAKEITSK 124
+ V Q H + +L+ +LP+ F+ I +L K +E + +
Sbjct: 140 NNHSVVEQAHEIQTMAKELELLKCVLPDKFVPGCIIAKLPPSWRGFGTALKHKRREYSIE 199
Query: 125 ANIVKNEAHPSKNQKPNKKFFKNKKTTFK-----------KKKGNCYVCGKPGHFANKCR 173
IV + +K ++TT + + C+VCG+PGH A KC
Sbjct: 200 GLIVSLDVEEKAWEKYAASKGDAQQTTNFKKQKKNNNNPNQDERTCFVCGQPGHLARKCP 259
Query: 174 YRKGDHKP 181
RKG P
Sbjct: 260 QRKGMKAP 267
>gi|108862305|gb|ABA96095.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 585
Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 81/208 (38%), Gaps = 67/208 (32%)
Query: 35 STILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAG--------AQNFKMAEDKEVTS 86
ILS L + L +VY A E+W L K+ DA ++KMA+++ V
Sbjct: 63 GCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMADNRSVVE 122
Query: 87 QIHGFHMLINDLKNENIILPESFM---------------------------------TID 113
Q H + +L+ +LP+ F+ ++D
Sbjct: 123 QAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYSVEGLIASLD 182
Query: 114 QLEKAKE---------ITSKANIVKNEAHPSKNQKPNKKFFKNKKTTFK----------- 153
EKA+E S ANIV H ++N+ K +K ++TT
Sbjct: 183 VEEKAREKDAASKGDGGQSSANIV----HKAQNKSKGK--YKAQQTTNFKKQKKNNNNPN 236
Query: 154 KKKGNCYVCGKPGHFANKCRYRKGDHKP 181
+ + C+VCG+ GH A KC RKG P
Sbjct: 237 QDERTCFVCGQVGHLARKCPQRKGMKAP 264
>gi|110289158|gb|ABB47727.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 895
Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 82/211 (38%), Gaps = 59/211 (27%)
Query: 28 KANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAG--------AQNFKMA 79
+A + ILS L + L +VY A E+W L K+ DA N+KMA
Sbjct: 56 EATTLFVGCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNGLYIMEQFHNYKMA 115
Query: 80 EDKEVTSQIHGFHMLINDLKNENIILPESFM----------------------------- 110
+++ V Q H + +L+ +LP+ F+
Sbjct: 116 DNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTTLKHKRQEYSVE 175
Query: 111 ----TIDQLEKAKE--ITSKAN---IVKNEAHPSKNQKPNKKFFKNKKTT---------- 151
+ D EKA+E SK + N H ++N+ K +K ++TT
Sbjct: 176 GLIASFDVEEKAREKDAASKGDGGQSSTNVVHKAQNKSKGK--YKAQQTTNFKKQKKNNN 233
Query: 152 -FKKKKGNCYVCGKPGHFANKCRYRKGDHKP 181
+ + C+VCG+ GH A KC RKG P
Sbjct: 234 NPNQDERTCFVCGQLGHLARKCPQRKGMKAP 264
>gi|110289309|gb|AAP54390.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1479
Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 90/214 (42%), Gaps = 60/214 (28%)
Query: 34 RSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQ--------NFKMAEDKEVT 85
R ++S L++ + DVY ++ L K+ + DAG++ ++KM +D+ V
Sbjct: 243 RGALISVLADNIVDVYMHMPSGKDMRDALEAKFGVSDAGSELYVMEQFYDYKMVDDRSVV 302
Query: 86 SQIHGFHMLINDLKNENIILPESF-----------------------------------M 110
Q H ML +L+N N LP+ F +
Sbjct: 303 EQAHEIQMLAKELENNNCELPDKFVAGGIIAKLPPSWSDFATSLKHKRQEFSVPDLIGSL 362
Query: 111 TIDQLEKAKEITSK-------ANIV-KNEAHPSKNQKPNKKFFKNKKTT------FKKKK 156
+++ +AK++ K AN+V K H S N K K K K T K K
Sbjct: 363 GVEEKARAKDVRGKKVEGGSSANMVQKKNPHASHNNKKVKPDVKPKAATNFKKKSKGKAK 422
Query: 157 GNCYVCGKPGHFANKCRYRKGDHKPPKANLVDGE 190
G+C+VCGK GH+A C RK D K AN++ E
Sbjct: 423 GDCFVCGKSGHWAKDCPERK-DRK--SANMIISE 453
>gi|32489125|emb|CAE04792.1| OSJNBb0018J12.5 [Oryza sativa Japonica Group]
Length = 1320
Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 85/211 (40%), Gaps = 59/211 (27%)
Query: 28 KANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAG--------AQNFKMA 79
+A + ILS L + L +VY A E+W L K+ DA ++KMA
Sbjct: 56 EATTLFVGCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMA 115
Query: 80 EDKEVTSQIHGFHMLINDLKNENIILPESFM----------------------------- 110
+++ V Q H + +L+ +LP+ F+
Sbjct: 116 DNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYSVE 175
Query: 111 ----TIDQLEKAKE--ITSKANIVKNEA---HPSKNQKPNKKFFKNKKTTFK-------- 153
++D EKA+E SK + ++ A H ++N+ K +K ++TT
Sbjct: 176 GLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK--YKAQQTTNFKKQKKNNN 233
Query: 154 ---KKKGNCYVCGKPGHFANKCRYRKGDHKP 181
+ + C+VCG+ GH A KC RKG P
Sbjct: 234 NPNQDERTCFVCGQIGHLARKCPQRKGMKAP 264
>gi|13937286|gb|AAK50117.1|AC087797_2 putative gag-pol polyprotein [Oryza sativa Japonica Group]
Length = 1198
Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 85/211 (40%), Gaps = 59/211 (27%)
Query: 28 KANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAG--------AQNFKMA 79
+A + ILS L + L +VY A E+W L K+ DA ++KMA
Sbjct: 56 EATTLFVGCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMA 115
Query: 80 EDKEVTSQIHGFHMLINDLKNENIILPESFM----------------------------- 110
+++ V Q H + +L+ +LP+ F+
Sbjct: 116 DNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYSVE 175
Query: 111 ----TIDQLEKAKE--ITSKANIVKNEA---HPSKNQKPNKKFFKNKKTTFK-------- 153
++D EKA+E SK + ++ A H ++N+ K +K ++TT
Sbjct: 176 GLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK--YKAQQTTNFKKQKKNNN 233
Query: 154 ---KKKGNCYVCGKPGHFANKCRYRKGDHKP 181
+ + C+VCG+ GH A KC RKG P
Sbjct: 234 NPNQDERTCFVCGQVGHLARKCPQRKGMKAP 264
>gi|116309085|emb|CAH66193.1| OSIGBa0144J05.5 [Oryza sativa Indica Group]
gi|116309103|emb|CAH66209.1| OSIGBa0096F13.4 [Oryza sativa Indica Group]
Length = 1147
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 99/241 (41%), Gaps = 68/241 (28%)
Query: 8 TEPPPDSDSENYEVLLQNWIKANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYI 67
+EPP + E N+ ++ + ++S L++ + DVY ++W L K+
Sbjct: 196 SEPPLSPEEE------ANFEASDCLFCGALISVLADNIVDVYMHMPSRKDMWDALEAKFG 249
Query: 68 IEDAGAQ--------NFKMAEDKEVTSQIHGFHMLINDLKNENIILPESF---------- 109
+ D G++ ++KM +D+ V Q H ML +L+N N LP+ F
Sbjct: 250 VSDTGSELYVMEQFYDYKMVDDRSVVEQAHEIQMLAKELENNNCELPDKFVAGGIIAKLP 309
Query: 110 -------------------------MTIDQLEKAKEITSK-------ANIV-KNEAHPSK 136
+ +++ +AK++ K AN+V K H S
Sbjct: 310 PSWSDFATSLKHKRQEFSVSDLIGSLGVEEKARAKDVRGKKVEGGSSANMVQKKNPHASH 369
Query: 137 NQKPNKKFFKNKKTT------FKKKKGNCYVCGKPGHFANKCRYRKGDHKPPK-ANLVDG 189
N K K K K T K KG+C+V GK GH+A C +HK K AN+V
Sbjct: 370 NNKKVKSDVKPKAATNFKKKGKGKAKGDCFVYGKYGHWAKDCP----EHKDRKSANMVIS 425
Query: 190 E 190
E
Sbjct: 426 E 426
>gi|77557040|gb|ABA99836.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1302
Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 85/211 (40%), Gaps = 59/211 (27%)
Query: 28 KANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAG--------AQNFKMA 79
+A + ILS L + L +VY A E+W L K+ DA ++KMA
Sbjct: 56 EATTLFVGCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMA 115
Query: 80 EDKEVTSQIHGFHMLINDLKNENIILPESFM----------------------------- 110
+++ V Q H + +L+ +LP+ F+
Sbjct: 116 DNRSVVEQAHEIKTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGAALKHKRQEYSVE 175
Query: 111 ----TIDQLEKAKE--ITSKANIVKNEA---HPSKNQKPNKKFFKNKKTTFK-------- 153
++D EKA+E SK + ++ A H ++N+ K +K ++TT
Sbjct: 176 GLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK--YKAQQTTNFKKQKKNNN 233
Query: 154 ---KKKGNCYVCGKPGHFANKCRYRKGDHKP 181
+ + C+VCG+ GH A KC RKG P
Sbjct: 234 NPNQDERTCFVCGQVGHLARKCPQRKGMKAP 264
>gi|49328112|gb|AAT58810.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1320
Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 85/211 (40%), Gaps = 59/211 (27%)
Query: 28 KANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAG--------AQNFKMA 79
+A + ILS L + L +VY A E+W L K+ DA ++KMA
Sbjct: 56 EATTLFVGCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMA 115
Query: 80 EDKEVTSQIHGFHMLINDLKNENIILPESFM----------------------------- 110
+++ V Q H + +L+ +LP+ F+
Sbjct: 116 DNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYSVE 175
Query: 111 ----TIDQLEKA--KEITSKANIVKNEA---HPSKNQKPNKKFFKNKKTTFK-------- 153
++D EKA K+ SK + ++ A H ++N+ K +K ++TT
Sbjct: 176 GLIASLDVEEKAWEKDAASKGDGGQSSANVVHKAQNKSKGK--YKAQQTTNFKKQKKNNN 233
Query: 154 ---KKKGNCYVCGKPGHFANKCRYRKGDHKP 181
+ + C+VCG+ GH A KC RKG P
Sbjct: 234 NPNQDERTCFVCGQVGHLARKCPQRKGMKAP 264
>gi|108709158|gb|ABF96953.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1197
Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 84/211 (39%), Gaps = 59/211 (27%)
Query: 28 KANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAG--------AQNFKMA 79
+A + ILS L + L +VY A E+W L K+ DA ++KMA
Sbjct: 27 EATTLFVGCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMA 86
Query: 80 EDKEVTSQIHGFHMLINDLKNENIILPESFM----------------------------- 110
+++ V Q H + +L+ +LP+ F+
Sbjct: 87 DNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYSVE 146
Query: 111 ----TIDQLEKAKE--ITSKANIVKNEA---HPSKNQKPNKKFFKNKKTTFK-------- 153
++D EKA+E SK + ++ A H ++N+ K +K + TT
Sbjct: 147 GLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK--YKAQHTTNFKKQKKNNN 204
Query: 154 ---KKKGNCYVCGKPGHFANKCRYRKGDHKP 181
+ + C+VCG+ GH A KC RKG P
Sbjct: 205 NPNQDERTCFVCGQVGHLARKCPQRKGMKAP 235
>gi|108707134|gb|ABF94929.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1284
Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 84/211 (39%), Gaps = 59/211 (27%)
Query: 28 KANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAG--------AQNFKMA 79
+A + ILS L + L +VY A E+W L K+ DA ++KMA
Sbjct: 41 EATTLFVGCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMA 100
Query: 80 EDKEVTSQIHGFHMLINDLKNENIILPESFMT---------------------------- 111
+++ V Q H + +L+ +LP+ F+
Sbjct: 101 DNRSVVEQAHEIQTMAKELELLKCVLPDKFVVGCIIAKLPPSWRSFGTVLKHKRQEYSVE 160
Query: 112 -----IDQLEKAKE--ITSKANIVKNEA---HPSKNQKPNKKFFKNKKTTFK-------- 153
+D EKA+E SK + ++ A H ++N+ K +K ++TT
Sbjct: 161 GLIAPLDVEEKAREKDAASKGDGGQSSANVMHKAQNKSKGK--YKAQQTTNLKKQKKNNN 218
Query: 154 ---KKKGNCYVCGKPGHFANKCRYRKGDHKP 181
+ + C+VCG+ GH A KC RKG P
Sbjct: 219 NPNQDERTCFVCGQLGHLARKCPQRKGMKAP 249
>gi|47777367|gb|AAT38001.1| Putative polyprotein [Oryza sativa Japonica Group]
Length = 1297
Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 85/211 (40%), Gaps = 59/211 (27%)
Query: 28 KANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAG--------AQNFKMA 79
+A + ILS L + L +VY A E+W L K+ DA ++KMA
Sbjct: 56 EATTLFVGCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMA 115
Query: 80 EDKEVTSQIHGFHMLINDLKNENIILPESFM----------------------------- 110
+++ V Q H + +L+ +LP+ F+
Sbjct: 116 DNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYSVE 175
Query: 111 ----TIDQLEKA--KEITSKANIVKNEA---HPSKNQKPNKKFFKNKKTTFK-------- 153
++D EKA K+ SK + ++ A H ++N+ K +K ++TT
Sbjct: 176 GLIASLDVEEKAWEKDAASKGDGGQSSANVVHKAQNKSKGK--YKAQQTTNFKKQKKNNN 233
Query: 154 ---KKKGNCYVCGKPGHFANKCRYRKGDHKP 181
+ + C+VCG+ GH A KC RKG P
Sbjct: 234 NPNQDERTCFVCGQVGHLARKCPQRKGMKAP 264
>gi|51854274|gb|AAU10655.1| polyprotein [Oryza sativa Japonica Group]
Length = 1286
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 86/215 (40%), Gaps = 61/215 (28%)
Query: 34 RSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQ--------NFKMAEDKEVT 85
R ++S L++ + DVY ++W L K+ + D ++ ++KM +D V
Sbjct: 175 RGALISVLADSIVDVYMHMPSGKDMWDALEAKFGVSDVDSELYVMEQFYDYKMVDDCSVV 234
Query: 86 SQIHGFHMLINDLKNENIILPESFM---------------------------------TI 112
Q H ML +L+N N LP+ F+ ++
Sbjct: 235 GQAHENQMLAKELENNNCELPDKFVAGGIIAKLPPSWTDFATSLKHKRQEFSVTDLIGSL 294
Query: 113 DQLEKAK---------EITSKANIV-KNEAHPSKNQKPNKKFFKNKKTT-------FKKK 155
EKA+ E S AN+V K H S N K K T K
Sbjct: 295 SVEEKARAQDNRGKKIEGGSSANLVQKKNPHASHNNNKKVKPDVKPKATTNFKKKGKGKA 354
Query: 156 KGNCYVCGKPGHFANKCRYRKGDHKPPKANLVDGE 190
KG+C+VCGKPGH+A C RK D K AN+V E
Sbjct: 355 KGDCFVCGKPGHWAKDCPERK-DKK--SANMVISE 386
>gi|38347007|emb|CAE02261.2| OSJNBb0058J09.8 [Oryza sativa Japonica Group]
Length = 1282
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 86/211 (40%), Gaps = 59/211 (27%)
Query: 28 KANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAG--------AQNFKMA 79
+A + ILS L + L +VY A E+W L K+ DA ++KMA
Sbjct: 56 EATTLFVGCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMA 115
Query: 80 EDKEVTSQIHGFHMLINDLKNENIILPESFM----------------------------- 110
+++ V Q H + +L+ +LP+ F+
Sbjct: 116 DNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYSVE 175
Query: 111 ----TIDQLEKAKE--ITSKANIVKNEA---HPSKNQKPNKKFFKNKKTTFKKKKGN--- 158
++D EKA+E SK + ++ A H ++N+ K +K ++TT KK+
Sbjct: 176 GLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK--YKAQQTTNFKKQKKNNN 233
Query: 159 --------CYVCGKPGHFANKCRYRKGDHKP 181
C+VCG+ GH A KC RKG P
Sbjct: 234 NPNQDERICFVCGQVGHLARKCPQRKGMKAP 264
>gi|113205226|gb|ABI34306.1| Polyprotein, putative [Solanum demissum]
Length = 1691
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 65/225 (28%), Positives = 95/225 (42%), Gaps = 82/225 (36%)
Query: 55 AYEIWAQLRKKYIIEDAGAQ--------NFKMAEDKEVTSQIHGFHMLINDLKNE----- 101
A +IW L+ KY E+AGA+ F+M ++K V Q F M++ +L++E
Sbjct: 87 AKKIWKALQSKYDTEEAGAKKYAASRFFRFQMVDNKSVVDQAQDFIMIVGELRSEEVKIG 146
Query: 102 -NII-------LPESF--------------------MTIDQLEKAK-----------EIT 122
N+I LP S+ M I E+A+ IT
Sbjct: 147 DNLIVCGIVDKLPPSWKEFQKTMRHKQKETSLETLIMKIRMEEEARGQDALLQTEENNIT 206
Query: 123 SKANIV-KNEAHPSK----------------NQKPNKK------FFKNKKTTFKKKKGNC 159
+K N++ N A P N +P KK +N++ + KG C
Sbjct: 207 TKVNLITSNNATPESHKNTSLKPKKKKFKKNNGRPPKKNNGENIQAQNQQV---QDKGPC 263
Query: 160 YVCGKPGHFANKCRYRKGDHKPPKANLVDGEDIIVAVVVTQENMV 204
+VCGK GH A CR+RK P+AN+ E+ VA V+T NMV
Sbjct: 264 FVCGKSGHIARFCRFRKRGPN-PQANVT--EEPFVA-VITDINMV 304
>gi|51038138|gb|AAT93941.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1433
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 84/207 (40%), Gaps = 59/207 (28%)
Query: 28 KANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAG--------AQNFKMA 79
+A + ILS L + L +VY A E+W L K+ DA ++KMA
Sbjct: 56 EATTLFVGCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMA 115
Query: 80 EDKEVTSQIHGFHMLINDLKNENIILPESFM----------------------------- 110
+++ V Q H + +L+ +LP+ F+
Sbjct: 116 DNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYSVE 175
Query: 111 ----TIDQLEKAKE--ITSKANIVKNEA---HPSKNQKPNKKFFKNKKTTFK-------- 153
++D EKA+E SK + ++ A H ++N+ K +K ++TT
Sbjct: 176 GLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK--YKAQQTTNFKKQKKNNN 233
Query: 154 ---KKKGNCYVCGKPGHFANKCRYRKG 177
+ + C+VCG+ GH A KC RKG
Sbjct: 234 NPNQDERTCFVCGQVGHLARKCPQRKG 260
>gi|50253454|gb|AAT71929.1| At3g43510 [Arabidopsis thaliana]
gi|52627129|gb|AAU84691.1| At3g43510 [Arabidopsis thaliana]
Length = 409
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 64/118 (54%), Gaps = 13/118 (11%)
Query: 1 MNLAEFLTEPPPDSDSENYEVLLQNWIKANKVCRSTILSTLSNELYDVY-SQHKFAYEIW 59
M LA L+EP P S + Q+W++ + +C + ++ +LS++LY Y + K A E+W
Sbjct: 178 MKLAYVLSEPYPGIGSGSS----QDWLRDDYLCHNHLMKSLSDDLYRQYLKRFKHAKELW 233
Query: 60 AQLRKKYIIEDAGAQ--------NFKMAEDKEVTSQIHGFHMLINDLKNENIILPESF 109
+L+ Y E++ ++ +FKM E++ V Q+ F + + + ++L E+F
Sbjct: 234 EELKWVYRREESNSKMVQVRKYIDFKMVEERPVLEQVQEFIKIADSIVGAGMVLDETF 291
>gi|7288029|emb|CAB81791.1| putative protein [Arabidopsis thaliana]
Length = 421
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 64/118 (54%), Gaps = 13/118 (11%)
Query: 1 MNLAEFLTEPPPDSDSENYEVLLQNWIKANKVCRSTILSTLSNELYDVY-SQHKFAYEIW 59
M LA L+EP P S + Q+W++ + +C + ++ +LS++LY Y + K A E+W
Sbjct: 190 MKLAYVLSEPYPGIGSGSS----QDWLRDDYLCHNHLMKSLSDDLYRQYLKRFKHAKELW 245
Query: 60 AQLRKKYIIEDAGAQ--------NFKMAEDKEVTSQIHGFHMLINDLKNENIILPESF 109
+L+ Y E++ ++ +FKM E++ V Q+ F + + + ++L E+F
Sbjct: 246 EELKWVYRREESNSKMVQVRKYIDFKMVEERPVLEQVQEFIKIADSIVGAGMVLDETF 303
>gi|147807877|emb|CAN75361.1| hypothetical protein VITISV_012860 [Vitis vinifera]
Length = 663
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 76/161 (47%), Gaps = 19/161 (11%)
Query: 44 ELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQNFKMAED-----KEVTSQIHGFHMLINDL 98
E + S +F Y + + R ++E +F++ E K QI ++I+
Sbjct: 116 EFFQNPSCTRFTYRVHPR-RNSLVVESWSVNSFRVLERLQNNMKHKRKQISLEDVIIH-- 172
Query: 99 KNENIILPESFMTIDQLEKAKEITSKANIVKNEAHPSKN--QKPNKKFFKNKKTTFK--- 153
I + E D +EK KE++SKAN+V+ + P N +K N + N +
Sbjct: 173 ----IRIEEQNRNRDNVEKTKELSSKANVVEEKXKPKNNRSEKXNSRTKPNASNKVQNPT 228
Query: 154 -KKKGNCYVCGKPGHFANKCRYRKGDHKP-PKANLVDGEDI 192
KK+GNC+VCGK GH A + R+ K K KANL E +
Sbjct: 229 IKKRGNCFVCGKSGHHATQYRHMKRTEKSNSKANLAKTEVV 269
>gi|38344080|emb|CAE01740.2| OSJNBb0056F09.3 [Oryza sativa Japonica Group]
Length = 366
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 87/218 (39%), Gaps = 64/218 (29%)
Query: 8 TEPPPDSDSENYEVLLQNWIKANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYI 67
+EPP + E + ++ + R ++S L + + DVY ++W L K+
Sbjct: 155 SEPPLSPEEE------AKFEASDCLFRGVLISVLVDYIVDVYMHMPSGKDMWDALEAKFG 208
Query: 68 IEDAGAQ--------NFKMAEDKEVTSQIHGFHMLINDLKNENIILPESFM--------- 110
+ DAG++ ++ M +D+ V Q H ML +L N N LP+ F+
Sbjct: 209 VSDAGSERYVMEQFYDYNMVDDRSVVEQAHEIQMLAKELGNNNCELPDKFVADGIIAKLP 268
Query: 111 -----------------TIDQL-------EKAK---------EITSKANIV-KNEAHPSK 136
+I L EKA+ E S AN+V K H S
Sbjct: 269 LSWSDFATSLKHKRQEFSITDLIGSLGVEEKARANDNRGKKIEGGSSANLVQKKNPHTSH 328
Query: 137 NQKPNKKF-FKNKKTT------FKKKKGNCYVCGKPGH 167
N K K K TT K KG+C+VCGKPGH
Sbjct: 329 NNNKKVKLDVKPKATTNFKKKGKGKAKGDCFVCGKPGH 366
>gi|77550993|gb|ABA93790.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1370
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 81/202 (40%), Gaps = 58/202 (28%)
Query: 29 ANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQ--------NFKMAE 80
A+ + ++S L++ + DVY ++W L K+ + DAG++ ++KM +
Sbjct: 177 ADCLFHGALISVLTDNIVDVYMHMPSGKDMWDALEAKFGVSDAGSELYVMEQFYDYKMVD 236
Query: 81 DKEVTSQIHGFHMLINDLKNENIILPESF------------------------------- 109
D+ V Q H ML +L+N N LP+ F
Sbjct: 237 DRSVVEQAHEIQMLAKELENNNCELPDKFVAGGIIAKLPPSWTDFATSLKHKRQEFSITD 296
Query: 110 ----MTIDQLEKAK-------EITSKANIV-KNEAHPSKNQKPNKKFFKNKKTT------ 151
+++++ +AK E S AN+V K H S N K K T
Sbjct: 297 LIGSLSVEEKARAKDNWGKKIEGGSSANLVQKKNPHASHNNNKKVKPDVKPKATTNFKKK 356
Query: 152 -FKKKKGNCYVCGKPGHFANKC 172
K KG C++CGK GH+A C
Sbjct: 357 GKGKTKGGCFMCGKSGHWAKDC 378
>gi|57863895|gb|AAG03096.2|AC073405_12 putative polyprotein [Oryza sativa Japonica Group]
gi|57863849|gb|AAW56890.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1274
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 84/211 (39%), Gaps = 59/211 (27%)
Query: 28 KANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAG--------AQNFKMA 79
+A + ILS L + L +VY A E+W L K+ DA ++KMA
Sbjct: 56 EATTLFVGCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMA 115
Query: 80 EDKEVTSQIHGFHMLINDLKNENIILPESF------------------------------ 109
+++ V Q H + +L+ +LP++F
Sbjct: 116 DNRSVVEQAHEIQTMAKELELLKCVLPDNFVAGCIIAKLPPSWRSFGTALKHKRQEYSVE 175
Query: 110 -----MTIDQLEKAKEITSKANIVKNEA---HPSKNQKPNKKFFKNKKTTFK-------- 153
+ +++ + K+ SK + ++ A H ++N+ K +K ++TT
Sbjct: 176 GLIASLNVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK--YKAQQTTNFKKQKKNNN 233
Query: 154 ---KKKGNCYVCGKPGHFANKCRYRKGDHKP 181
+ + C+VCG+ GH A KC RKG P
Sbjct: 234 NPNQDERTCFVCGQVGHLARKCPQRKGMKAP 264
>gi|110289385|gb|AAP54573.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1320
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 84/211 (39%), Gaps = 59/211 (27%)
Query: 28 KANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAG--------AQNFKMA 79
+A + ILS L + L +VY A E+W L K+ DA ++KMA
Sbjct: 56 EATTLFVGCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMA 115
Query: 80 EDKEVTSQIHGFHMLINDLKNENIILPESFM----------------------------- 110
+++ V Q H + L+ +LP+ F+
Sbjct: 116 DNRSVVEQAHEIQTMAKVLELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYSVE 175
Query: 111 ----TIDQLEKAKE--ITSKANIVKNEA---HPSKNQKPNKKFFKNKKTTFK-------- 153
++D EKA+E SK + ++ A H ++N+ K +K ++TT
Sbjct: 176 GLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK--YKAQQTTNFKKQKKNNN 233
Query: 154 ---KKKGNCYVCGKPGHFANKCRYRKGDHKP 181
+ + C+VCG+ GH A KC RKG P
Sbjct: 234 NPNQDERTCFVCGQVGHLARKCPQRKGMKAP 264
>gi|38344281|emb|CAE03764.2| OSJNBa0013K16.13 [Oryza sativa Japonica Group]
Length = 1264
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 85/211 (40%), Gaps = 59/211 (27%)
Query: 28 KANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAG--------AQNFKMA 79
+A + ILS L + L +VY A E+W L K+ DA ++KMA
Sbjct: 56 EATTLFVGCILSILGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMA 115
Query: 80 EDKEVTSQIHGFHMLINDLKNENIILPESFM----------------------------- 110
+++ V Q H + +L+ +LP+ F+
Sbjct: 116 DNRFVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYSVE 175
Query: 111 ----TIDQLEKAKE--ITSKANIVKNEA---HPSKNQKPNKKFFKNKKTTFK-------- 153
++D EKA+E SK + ++ A H ++N+ K +K ++TT
Sbjct: 176 GLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK--YKAQQTTNFKKQKKNNN 233
Query: 154 ---KKKGNCYVCGKPGHFANKCRYRKGDHKP 181
+ + C+VCG+ GH A KC RKG P
Sbjct: 234 NPNQDERTCFVCGQVGHLARKCPQRKGMKAP 264
>gi|15144313|gb|AAK84454.1|AC087192_15 putative polyprotein [Oryza sativa Japonica Group]
Length = 1308
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 84/211 (39%), Gaps = 59/211 (27%)
Query: 28 KANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAG--------AQNFKMA 79
+A + ILS L + L +VY A E+W L K+ DA ++KMA
Sbjct: 56 EATTLFVGCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMA 115
Query: 80 EDKEVTSQIHGFHMLINDLKNENIILPESFM----------------------------- 110
+++ V Q H + L+ +LP+ F+
Sbjct: 116 DNRSVVEQAHEIQTMAKVLELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYSVE 175
Query: 111 ----TIDQLEKAKE--ITSKANIVKNEA---HPSKNQKPNKKFFKNKKTTFK-------- 153
++D EKA+E SK + ++ A H ++N+ K +K ++TT
Sbjct: 176 GLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK--YKAQQTTNFKKQKKNNN 233
Query: 154 ---KKKGNCYVCGKPGHFANKCRYRKGDHKP 181
+ + C+VCG+ GH A KC RKG P
Sbjct: 234 NPNQDERTCFVCGQVGHLARKCPQRKGMKAP 264
>gi|47900532|gb|AAT39267.1| putative polyprotein [Oryza sativa Japonica Group]
gi|50878407|gb|AAT85181.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1297
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 84/209 (40%), Gaps = 55/209 (26%)
Query: 28 KANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAG--------AQNFKMA 79
+A + ILS L + L +VY A E+W L K+ DA ++KMA
Sbjct: 56 EATTLFVGCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMA 115
Query: 80 EDKEVTSQIHGFHMLINDLKNENIILPESFM----------------------------- 110
+++ V Q H + +L+ +LP+ F+
Sbjct: 116 DNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYSVE 175
Query: 111 ----TIDQLEKAKE--ITSKANIVKNEAHP-SKNQKPNKKFFKNKKTTFK---------- 153
++D EKA+E SK + ++ A+ K Q +K+ +K ++TT
Sbjct: 176 GLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKEKYKAQQTTNFKKQKKNNNNP 235
Query: 154 -KKKGNCYVCGKPGHFANKCRYRKGDHKP 181
+ + C+VCG+ GH A KC KG P
Sbjct: 236 NQDERTCFVCGQVGHLARKCPQHKGMKAP 264
>gi|108709742|gb|ABF97537.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1397
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 84/211 (39%), Gaps = 59/211 (27%)
Query: 28 KANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAG--------AQNFKMA 79
+A + ILS L + L +VY A E+W L K+ DA ++KMA
Sbjct: 133 EATTLFVGCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMA 192
Query: 80 EDKEVTSQIHGFHMLINDLKNENIILPESFM----------------------------- 110
+++ V H + +L+ +LP+ F+
Sbjct: 193 DNRSVVEHAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKRKRQEYSVE 252
Query: 111 ----TIDQLEKAKE--ITSKANIVKNEA---HPSKNQKPNKKFFKNKKTTFK-------- 153
++D EKA+E SK + ++ A H ++N+ K +K ++TT
Sbjct: 253 GLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK--YKAQQTTNFKKQKKNNN 310
Query: 154 ---KKKGNCYVCGKPGHFANKCRYRKGDHKP 181
+ + C+VCG+ GH A KC RKG P
Sbjct: 311 NPNQDERTCFVCGQVGHLARKCPQRKGMKAP 341
>gi|55168300|gb|AAV44166.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1342
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 34 RSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQNFKMAEDKEVTSQIHGFHM 93
R ++S L++ + DVY ++W L K+ + DAG++ + M Q + + M
Sbjct: 214 RGALISVLADNIVDVYMHMPSGKDMWDALEAKFGVSDAGSELYVM-------KQFYDYKM 266
Query: 94 LINDLKNENIILPESFMTIDQLEKAK---------EITSKANIVKNEAHPSKNQKPNKKF 144
K + +P+ ++ EKA+ E S AN+V+ H S N K K
Sbjct: 267 H----KRQEFSVPDLIGSLGVEEKARAKDVRGKKVEGGSSANMVQKNPHASHNNKKVKPD 322
Query: 145 FKNKKTT------FKKKKGNCYVCGKPGHFANKCRYRKGDHKPPKANLVDGE 190
K K T K KG+C+VCGK GH+A C RK D K AN++ E
Sbjct: 323 VKPKAATNFKKKGKGKAKGDCFVCGKSGHWAKDCPERK-DRK--SANMIISE 371
>gi|40538957|gb|AAR87214.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group]
Length = 1393
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 84/211 (39%), Gaps = 59/211 (27%)
Query: 28 KANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAG--------AQNFKMA 79
+A + ILS L + L +VY A E+W L K+ DA ++KMA
Sbjct: 133 EATTLFVGCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMA 192
Query: 80 EDKEVTSQIHGFHMLINDLKNENIILPESFM----------------------------- 110
+++ V H + +L+ +LP+ F+
Sbjct: 193 DNRSVVEHAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKRKRQEYSVE 252
Query: 111 ----TIDQLEKAKE--ITSKANIVKNEA---HPSKNQKPNKKFFKNKKTTFK-------- 153
++D EKA+E SK + ++ A H ++N+ K +K ++TT
Sbjct: 253 GLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK--YKAQQTTNFKKQKKNNN 310
Query: 154 ---KKKGNCYVCGKPGHFANKCRYRKGDHKP 181
+ + C+VCG+ GH A KC RKG P
Sbjct: 311 NPNQDERTCFVCGQVGHLARKCPQRKGMKAP 341
>gi|62734250|gb|AAX96359.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group]
gi|77549036|gb|ABA91833.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 709
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 55/111 (49%), Gaps = 14/111 (12%)
Query: 8 TEPPPDSDSENYEVLLQNWIKANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYI 67
+EPP + E + ++ + R ++S L++ + DVY ++W L K+
Sbjct: 129 SEPPLSPEEE------AKFEASDCLFRGALISVLADNIVDVYMHMPSGKDMWDALEAKFG 182
Query: 68 IEDAGAQ--------NFKMAEDKEVTSQIHGFHMLINDLKNENIILPESFM 110
+ DAG++ ++KM +D+ V Q H ML +L+N N LP+ F+
Sbjct: 183 VSDAGSELYVMEQFYDYKMVDDRSVVEQAHEIQMLAKELENNNCELPDKFV 233
>gi|31432272|gb|AAP53927.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1297
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 84/211 (39%), Gaps = 59/211 (27%)
Query: 28 KANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAG--------AQNFKMA 79
+A + ILS L + L +VY A E+W L K+ DA ++KMA
Sbjct: 56 EATTLFVGCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMA 115
Query: 80 EDKEVTSQIHGFHMLINDLKNENIILPESFM----------------------------- 110
+++ V Q H + +L+ +LP+ F+
Sbjct: 116 DNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYSVE 175
Query: 111 ----TIDQLEKAKE--ITSKANIVKNEA---HPSKNQKPNKKFFKNKKTTFK-------- 153
++D EKA+E SK + ++ A H ++N+ K +K ++TT
Sbjct: 176 GLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK--YKAQQTTNFKKQKKNNN 233
Query: 154 ---KKKGNCYVCGKPGHFANKCRYRKGDHKP 181
+ + C+VCG+ GH A KC KG P
Sbjct: 234 NPNQDERTCFVCGQVGHLARKCPQHKGMKAP 264
>gi|41469462|gb|AAS07263.1| putative gag/pol polyprotein [Oryza sativa Japonica Group]
gi|108710643|gb|ABF98438.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1318
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 57/112 (50%), Gaps = 20/112 (17%)
Query: 8 TEPPPDSDSE-NYEVLLQNWIKANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKY 66
+EPP + E +E L + + R ++S L++ + DVY Q ++W L K+
Sbjct: 209 SEPPLSPEEEAKFETL-------DCLFRGALISVLADNIVDVYMQK----DMWDALEAKF 257
Query: 67 IIEDAGAQ--------NFKMAEDKEVTSQIHGFHMLINDLKNENIILPESFM 110
+ DAG++ ++KM +D+ + Q H ML +LKN N LP+ F+
Sbjct: 258 GVSDAGSELYVVEQFYDYKMVDDRSLVEQAHEIQMLAKELKNNNCELPDKFV 309
>gi|218201760|gb|EEC84187.1| hypothetical protein OsI_30574 [Oryza sativa Indica Group]
Length = 317
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 79/196 (40%), Gaps = 55/196 (28%)
Query: 37 ILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAG--------AQNFKMAEDKEVTSQI 88
ILS L + L VY A E+W L K+ DA ++KM + + + Q
Sbjct: 23 ILSVLGDRLVKVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHHYKMVDKRSIVEQA 82
Query: 89 HGFHMLINDLKNENIILPESFM---------------------------------TIDQL 115
H + +L+ +LP+ F+ ++D
Sbjct: 83 HEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRGFGTALKHKRQEYSVEGLIASLDVK 142
Query: 116 EKAKE--ITSKANIVKNEAHP-SKNQKPNKKFFKNKKTTFKKKKG-----------NCYV 161
EKA+E SK + ++ A+ K Q +K K ++TT KK+ C+V
Sbjct: 143 EKAREKDAASKGDGGQSTANVVHKVQNKSKGKHKAQQTTNFKKRKNNNNNPNLDERTCFV 202
Query: 162 CGKPGHFANKCRYRKG 177
CG+PGH A KC+ RKG
Sbjct: 203 CGQPGHLARKCQQRKG 218
>gi|77551169|gb|ABA93966.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1212
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 85/213 (39%), Gaps = 59/213 (27%)
Query: 28 KANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAG--------AQNFKMA 79
+A + ILS L + L +VY E+W L ++ DA ++KMA
Sbjct: 56 EATTLFVGCILSVLGDRLVEVYMHMTDTKELWDALNTEFGATDASNDMYIMEQFHDYKMA 115
Query: 80 EDKEVTSQIHGFHMLINDLKNENIILPESFM----------------------------- 110
+++ V Q H + +L+ +L + F+
Sbjct: 116 DNRSVVEQAHEIQTMAKELELLKCVLLDKFVAGCIIAKLPPSWRGFGTALKHKRQEYSVE 175
Query: 111 ----TIDQLEKAKE--ITSKANIVKNEA---HPSKNQKPNKKFFKNKKTTFK-------- 153
++D EKA+E SK + ++ A H ++N+ K +K ++TT
Sbjct: 176 GLIASLDVEEKAREKDAASKGDGGQSNANVVHKAQNKSKGK--YKAQQTTNFKKQKKNNN 233
Query: 154 ---KKKGNCYVCGKPGHFANKCRYRKGDHKPPK 183
+ + C+VCG+PGH A KC RKG P +
Sbjct: 234 NPNQDERTCFVCGQPGHLARKCPQRKGMKAPAR 266
>gi|108711058|gb|ABF98853.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1320
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 84/211 (39%), Gaps = 59/211 (27%)
Query: 28 KANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAG--------AQNFKMA 79
+A + ILS L + L +VY A E+W L K+ DA ++KMA
Sbjct: 56 EATTLFVGCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMA 115
Query: 80 EDKEVTSQIHGFHMLINDLKNENIILPESFM----------------------------- 110
+++ V Q + +L+ +LP+ F+
Sbjct: 116 DNRSVVEQAQEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYSVE 175
Query: 111 ----TIDQLEKAKE--ITSKANIVKNEA---HPSKNQKPNKKFFKNKKTTFK-------- 153
++D EKA+E SK + ++ A H ++N+ K +K ++TT
Sbjct: 176 GLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK--YKAQQTTNFKKQKKNNN 233
Query: 154 ---KKKGNCYVCGKPGHFANKCRYRKGDHKP 181
+ + C+VCG+ GH A KC RKG P
Sbjct: 234 NPNQDERTCFVCGQVGHLARKCPQRKGMKAP 264
>gi|16924041|gb|AAL31653.1|AC079179_8 Putative polyprotein from transposon TNT [Oryza sativa]
gi|31429907|gb|AAP51896.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1342
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 8/85 (9%)
Query: 34 RSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQ--------NFKMAEDKEVT 85
R ++S L++ + DVY ++W L K+ + DAG++ ++KM +D+ V
Sbjct: 217 RGALISVLADNIVDVYMHMPSGKDMWDALEAKFGVSDAGSELYVMEQFYDYKMVDDRSVV 276
Query: 86 SQIHGFHMLINDLKNENIILPESFM 110
Q H ML L+N N LP+ F+
Sbjct: 277 EQAHEIQMLAKKLENNNCELPDKFV 301
>gi|14626276|gb|AAK71544.1|AC087852_4 putative polyprotein [Oryza sativa Japonica Group]
Length = 1308
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 84/211 (39%), Gaps = 59/211 (27%)
Query: 28 KANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAG--------AQNFKMA 79
+A + ILS L + L +VY A E+W L K+ DA ++KMA
Sbjct: 56 EATTLFVGCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMA 115
Query: 80 EDKEVTSQIHGFHMLINDLKNENIILPESFM----------------------------- 110
+++ V Q + +L+ +LP+ F+
Sbjct: 116 DNRSVVEQAQEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYSVE 175
Query: 111 ----TIDQLEKAKE--ITSKANIVKNEA---HPSKNQKPNKKFFKNKKTTFK-------- 153
++D EKA+E SK + ++ A H ++N+ K +K ++TT
Sbjct: 176 GLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK--YKAQQTTNFKKQKKNNN 233
Query: 154 ---KKKGNCYVCGKPGHFANKCRYRKGDHKP 181
+ + C+VCG+ GH A KC RKG P
Sbjct: 234 NPNQDERTCFVCGQVGHLARKCPQRKGMKAP 264
>gi|38346946|emb|CAE04807.2| OSJNBb0022P19.2 [Oryza sativa Japonica Group]
Length = 1099
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 83/210 (39%), Gaps = 68/210 (32%)
Query: 34 RSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQNFKMAEDKEVTSQIHGFHM 93
R ++S L++ + D+Y F ++W L K+ + DAG + Q H M
Sbjct: 151 RGALISVLADNIVDLYMHMPFGKDMWDALEAKFGVSDAGIE------------QAHEIQM 198
Query: 94 LINDLKNENIILPESF-----------------------------------MTIDQLEKA 118
L +L+N N LP+ F + +++ +A
Sbjct: 199 LAKELENNNCELPDKFVVGGIIAKLPPSWSDFATSLKHKRQEFSVSDLIGSLGVEEKARA 258
Query: 119 KEITSK-------ANIV-KNEAHPSKNQKPNKKFFK-----NKKTTFKKKKG-----NCY 160
K++ K AN V K H S N K K K N T FKKK +C+
Sbjct: 259 KDVRGKKVEGGSSANKVQKKNPHASHNNKKVKPDVKPDVKPNAATNFKKKGKGKAKGDCF 318
Query: 161 VCGKPGHFANKCRYRKGDHKPPKANLVDGE 190
VCGK GH+A C RK D K AN+V E
Sbjct: 319 VCGKSGHWAKDCPERK-DRK--SANMVISE 345
>gi|52353525|gb|AAU44091.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1117
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 83/208 (39%), Gaps = 54/208 (25%)
Query: 34 RSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQNFKMAEDKEVTSQIHGFHM 93
R ++S L++ + D+Y ++W L ++KM +D+ V Q H M
Sbjct: 128 RGALISVLADNIVDMYMHMLSGKDMWDALEASSEFLTPALYDYKMVDDRSVVEQAHEIQM 187
Query: 94 LINDLKNENIILPESFMT------------------------------IDQL---EKAK- 119
L +L+N N LP+ F+ I L EKA+
Sbjct: 188 LAKELENNNCELPDKFVAGGIIAKLPPFWSDFATSLKHKRQEFSVTNLIGSLGVEEKARA 247
Query: 120 --------EITSKANIVK----NEAHPSKNQKPNKKFFKNKKTTFKKKKG-----NCYVC 162
E S N+V+ + +H + N+K T FKKK +C+VC
Sbjct: 248 KDNRGKNIEGGSSTNLVQKKNPHASHNNNNKKVKPDVKPKATTNFKKKGKGKAKGDCFVC 307
Query: 163 GKPGHFANKCRYRKGDHKPPKANLVDGE 190
GKPGH+A C RK D K AN+V E
Sbjct: 308 GKPGHWAKNCPDRK-DKK--SANMVISE 332
>gi|77550940|gb|ABA93737.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1579
Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 84/211 (39%), Gaps = 59/211 (27%)
Query: 28 KANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAG--------AQNFKMA 79
+A + ILS L + L +VY A E+W L K+ DA ++KMA
Sbjct: 356 EATTLFVGCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMA 415
Query: 80 EDKEVTSQIHGFHMLINDLKNENIILPESFM----------------------------- 110
+++ V Q H + +L+ +LP+ F+
Sbjct: 416 DNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTAFKYKRQEYSVE 475
Query: 111 ----TIDQLEKAKE--ITSKANIVKNEA---HPSKNQKPNKKFFKNKKTT---------- 151
++D EKA+E SK + ++ A H ++N+ K +K ++TT
Sbjct: 476 GLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK--YKAQQTTNFKKQKKNNN 533
Query: 152 -FKKKKGNCYVCGKPGHFANKCRYRKGDHKP 181
+ + C+VCG+ H A KC RKG P
Sbjct: 534 NPNQDERTCFVCGQVRHLARKCPQRKGMKAP 564
>gi|449528782|ref|XP_004171382.1| PREDICTED: uncharacterized protein LOC101228884, partial [Cucumis
sativus]
Length = 202
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 45/85 (52%), Gaps = 9/85 (10%)
Query: 13 DSDSENYEVLLQNWIKANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAG 72
+SD E ++ + W A +C++ IL+ L N LY+VYS A +W L KKY E AG
Sbjct: 41 ESDKEK-QLAIDAWKHAEYLCKNYILNGLDNTLYNVYSSVDSAKNLWTSLEKKYKTEVAG 99
Query: 73 AQNF--------KMAEDKEVTSQIH 89
A+ F KM + K V SQ+
Sbjct: 100 AKKFIVGKFLDYKMVDSKTVISQVQ 124
>gi|77556955|gb|ABA99751.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1805
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 83/211 (39%), Gaps = 59/211 (27%)
Query: 28 KANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAG--------AQNFKMA 79
+A + ILS L + L +VY A E+W L K+ DA ++KMA
Sbjct: 541 EATTLFVGCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMA 600
Query: 80 EDKEVTSQIHGFHMLINDLKNENIILPESFM----------------------------- 110
++ V Q H + +L+ +LP+ F+
Sbjct: 601 NNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYSVE 660
Query: 111 ----TIDQLEKAKE--ITSKANIVKNEA---HPSKNQKPNKKFFKNKKTTFK-------- 153
++D EKA+E SK + ++ A H ++N+ K +K ++TT
Sbjct: 661 GLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK--YKAQQTTNFKKQKKNNN 718
Query: 154 ---KKKGNCYVCGKPGHFANKCRYRKGDHKP 181
+ + C+VC + GH A KC RKG P
Sbjct: 719 NPNQDERTCFVCSQVGHLARKCPQRKGMKAP 749
>gi|147815761|emb|CAN63736.1| hypothetical protein VITISV_037249 [Vitis vinifera]
Length = 839
Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 45/81 (55%), Gaps = 8/81 (9%)
Query: 45 LYDVYSQHKFAYEIWAQLRKKYIIEDAGAQNF--------KMAEDKEVTSQIHGFHMLIN 96
+Y+VYSQ K E+W L KKY E+AG + F KM + K VTS++ ++++
Sbjct: 1 MYNVYSQVKTTKELWEFLEKKYKTENAGMKKFIVGRFLDYKMVDSKTVTSEVQELQIILH 60
Query: 97 DLKNENIILPESFMTIDQLEK 117
+L E + L ESF +EK
Sbjct: 61 ELHAEKMELSESFQVTTIVEK 81
>gi|38347504|emb|CAE02415.2| OSJNBa0095E20.2 [Oryza sativa Japonica Group]
Length = 842
Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 79/195 (40%), Gaps = 57/195 (29%)
Query: 39 STLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQ--------NFKMAEDKEVTSQIHG 90
L++ + DVY ++W L K+ + DAG++ ++KM +D+ V Q H
Sbjct: 37 GVLADNIVDVYMHMPSGKDMWDALEAKFEVSDAGSKLYVMEQFYDYKMVDDRSVVEQAHE 96
Query: 91 FHMLINDLKNENIILPESFMT------------------------------IDQL----- 115
ML +L+N N LP+ F+ I L
Sbjct: 97 IQMLAKELENNNCELPDKFVAGGIIAKLPPSWTDFATSLKHKRQEFSVTDLIGSLGVEEK 156
Query: 116 -----EKAKEI--TSKANIV-KNEAHPSKNQKPNKKFFKNKKTT------FKKKKGNCYV 161
+AK+I S AN+V K H S N K K K K TT K KG C+V
Sbjct: 157 SGAKDNRAKKIKGGSSANLVQKKNLHASHNNKKVKPNVKPKATTNFKKKGKGKTKGGCFV 216
Query: 162 CGKPGHFANKCRYRK 176
CGK GH+A C RK
Sbjct: 217 CGKSGHWAKHCPERK 231
>gi|20502803|gb|AAM22635.1|AF434192_2 Gag and Pol [Zea mays]
Length = 1264
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 82/210 (39%), Gaps = 53/210 (25%)
Query: 29 ANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGA--------QNFKMAE 80
AN + +LS L + L D Q+ ++W L KY DAG+ ++KM +
Sbjct: 26 ANTMFTGAVLSALVDRLVDANMQYTDGKQLWDALTTKYGASDAGSDLYIMESFHDYKMVD 85
Query: 81 DKEVTSQIHGFHMLINDLKNENIILPESFM------------------------------ 110
++ + Q H + +L + I+LP+ F+
Sbjct: 86 NRSIVEQAHEIQCIAKELDHLKIVLPDRFVAGCIIAKLPSTWRNFATALKHKRQEISVEN 145
Query: 111 ---TIDQLEKAK---------EITSKANIVKNEAHPSKNQKPNKKFFKNKKTTFKKKKG- 157
++D EKA+ E S AN+V+ + K + + K K KK K
Sbjct: 146 LIASLDVEEKARAKDTGSKGGEGHSSANMVQKNHNKGKGKPKSNKPNKTTNFKKKKNKAE 205
Query: 158 -NCYVCGKPGHFANKCRYRKGDHKPPKANL 186
C+ CG+ GHFA C R D + K N+
Sbjct: 206 LTCFACGEAGHFAKDCPDR-ADRRGKKGNV 234
>gi|147846510|emb|CAN81655.1| hypothetical protein VITISV_042593 [Vitis vinifera]
Length = 627
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 74/146 (50%), Gaps = 16/146 (10%)
Query: 64 KKYIIEDAGAQNFKMAEDKEVTSQIHGFHMLINDLKNENIILPESFMTIDQLEKAK-EIT 122
KK+I+ ++KM + K VTSQ+ +++++L E + L +SF +EK K E
Sbjct: 2 KKFIV--GRFLDYKMVDSKTVTSQVQKLQIILHELHVEKMELSKSFQVAAIVEKLKIEED 59
Query: 123 SKANIVKNEAHPSKNQ----KPNKKFFKNKKTTFKKKKGNCYVCGKPGHFANKCRYRKGD 178
++ + K HP++++ +PN K+ F + CY+C K GH A CR ++
Sbjct: 60 NRVSKKKVGKHPTESKTNLVEPNAN---KKRKDFSEVCWKCYICNKQGHRAKNCRLKEQS 116
Query: 179 HKPPKANLVDGEDIIVAVVVTQENMV 204
+ N++ A+V+ + NMV
Sbjct: 117 KEKELTNMLS------ALVLFEANMV 136
>gi|108710862|gb|ABF98657.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 261
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 91/212 (42%), Gaps = 53/212 (25%)
Query: 18 NYEVLLQNWIKANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQNFK 77
+++ + W+ A K + T + EL+D + A + L YI+E ++K
Sbjct: 58 RWQIRVTLWLTAMKCFWVYMHMTDAKELWDALNTKCGATDASNDL---YIMEQF--HDYK 112
Query: 78 MAEDKEVTSQIHGFHMLINDLKNENIILPESFM----------------------TIDQL 115
MA+++ V Q H + +L+ +LP+ F+ ++D
Sbjct: 113 MADNRSVVEQAHEIQTMAKELELLKCVLPDKFVARSFGTALKHKRQEYSVEGLIASLDVE 172
Query: 116 EKAKE--ITSK-------ANIVKNEAHPSKNQKPNKKFFKNKKTTFK-----------KK 155
EKA+E TSK ANIV H ++N+ K +K ++TT +
Sbjct: 173 EKAREKDATSKDDGGQSSANIV----HKAQNKSKGK--YKAQQTTNFKKQKKNNNNSNQD 226
Query: 156 KGNCYVCGKPGHFANKCRYRKGDHKPPKANLV 187
+ C+VCG+ GH A KC RKG P ++ V
Sbjct: 227 ERTCFVCGQLGHLARKCPQRKGMKAPAGSHRV 258
>gi|77550728|gb|ABA93525.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1235
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 82/211 (38%), Gaps = 59/211 (27%)
Query: 28 KANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAG--------AQNFKMA 79
+A + ILS L + L +VY A E+W L K+ DA ++KMA
Sbjct: 56 EATTLFVGCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMA 115
Query: 80 EDKEVTSQIHGFHMLINDLKNENIILPESFM----------------------------- 110
+++ V Q H + +L+ +L + F+
Sbjct: 116 DNRSVVEQAHEIQTMAKELELLKCVLLDKFVAGCIIAKLPPSWRSFGTALKHKRQEYSVE 175
Query: 111 ----TIDQLEKAKE--ITSKAN---IVKNEAHPSKNQKPNKKFFKNKKTTFK-------- 153
++D EKA+E SK + N H ++N+ K +K ++TT
Sbjct: 176 GLIASLDVEEKAREKDAASKGDGGQSSSNVVHKAQNKSKGK--YKAQQTTNFKKQKKNNN 233
Query: 154 ---KKKGNCYVCGKPGHFANKCRYRKGDHKP 181
+ + C+VCG+ GH A KC RKG P
Sbjct: 234 NPNQDERTCFVCGQVGHLARKCPQRKGMKAP 264
>gi|53980940|gb|AAU44026.2| putative polyprotein [Oryza sativa Japonica Group]
Length = 1391
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 79/199 (39%), Gaps = 59/199 (29%)
Query: 40 TLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAG--------AQNFKMAEDKEVTSQIHGF 91
L + L +VY A E+W L K+ DA ++KMA+++ V Q H
Sbjct: 157 VLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMADNRSVVEQAHEI 216
Query: 92 HMLINDLKNENIILPESFM---------------------------------TIDQLEKA 118
+ +L+ +LP+ F+ ++D EKA
Sbjct: 217 QTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYSVEGLIASLDVEEKA 276
Query: 119 KE--ITSKANIVKNEA---HPSKNQKPNKKFFKNKKTTFK-----------KKKGNCYVC 162
+E SK + ++ A H ++N+ K +K ++TT + + C+VC
Sbjct: 277 REKDAASKGDGGQSSANVVHKAQNKSKGK--YKAQQTTNFKKQKKNNNNPNQDERTCFVC 334
Query: 163 GKPGHFANKCRYRKGDHKP 181
G+ GH A KC RKG P
Sbjct: 335 GQVGHLARKCPQRKGMKAP 353
>gi|222641374|gb|EEE69506.1| hypothetical protein OsJ_28953 [Oryza sativa Japonica Group]
Length = 214
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 70/175 (40%), Gaps = 55/175 (31%)
Query: 57 EIWAQLRKKYIIEDAGAQ--------NFKMAEDKEVTSQIHGFHMLINDLKNENIILPE- 107
++W L K+ + DAG++ ++KM +D+ V Q H ML +L+N N LP+
Sbjct: 8 DMWDALEAKFGVSDAGSELYVMEQFYDYKMVDDRSVVEQAHEIQMLAKELENNNCELPDK 67
Query: 108 ---------------------------------SFMTIDQLEKAK-------EITSKANI 127
F+ +++ +AK E S A +
Sbjct: 68 FVVGGIIAKLPPWSDFATFLKHKRQEFSVSDLIGFLGVEEKARAKDNRGKKVEGGSSAIM 127
Query: 128 VKNEAHPSKNQKPNKKFFKNKKTT------FKKKKGNCYVCGKPGHFANKCRYRK 176
V+ H S N K K K TT K KG+C+VCGK H+A C RK
Sbjct: 128 VQKNPHASHNNKKVMPDVKPKATTNFKKKGKGKAKGDCFVCGKSRHWAKYCPERK 182
>gi|77555429|gb|ABA98225.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1199
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 45/84 (53%), Gaps = 8/84 (9%)
Query: 35 STILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQ--------NFKMAEDKEVTS 86
+++ L++ + DVY ++W L+ K+ + DAG++ ++KM +D+ V
Sbjct: 174 GALINVLADNIVDVYMHMPSGKDMWDALKAKFGVSDAGSELYVMEQFYDYKMVDDRSVVE 233
Query: 87 QIHGFHMLINDLKNENIILPESFM 110
Q H ML +L+N N LP+ F+
Sbjct: 234 QAHEIQMLAKELENNNCELPDKFV 257
>gi|21671931|gb|AAM74293.1|AC083944_11 Putative transposable element [Oryza sativa Japonica Group]
Length = 1169
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 91/208 (43%), Gaps = 46/208 (22%)
Query: 8 TEPPPDSDSE-NYEVLLQNWIKANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKY 66
+EPP + E +EV A+ + R ++S L++ + DVY ++W L+ K+
Sbjct: 153 SEPPLSPEEEAKFEV-------ADCLFRGALISVLADSIVDVYMHMPSRKDMWDALQAKF 205
Query: 67 IIEDAGAQ--------NFKMAEDKEVTSQIHGFHMLI------NDL------KNENIILP 106
+ DAG++ ++ M +D+ V Q ++ +D K + +
Sbjct: 206 RVSDAGSELYVMEQFYDYNMVDDRSVVEQFVAGGIIAKLPPSWSDFATSLKHKRQEFSVT 265
Query: 107 ESFMTIDQLEKAK----------EITSKANIV-KNEAHPSKNQKPNKKFFKNKKTT--FK 153
+ ++ EKA+ + S AN+V K H S N K K K T FK
Sbjct: 266 DLIGSLGVEEKARAKDNRGKKKNDGGSSANLVQKKNPHASHNNKKKVKPDVKPKATTNFK 325
Query: 154 KK-----KGNCYVCGKPGHFANKCRYRK 176
KK K + +VCGKPGH+A C RK
Sbjct: 326 KKGQGKAKVDFFVCGKPGHWAKDCLDRK 353
>gi|218197570|gb|EEC79997.1| hypothetical protein OsI_21648 [Oryza sativa Indica Group]
Length = 382
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 80/191 (41%), Gaps = 60/191 (31%)
Query: 57 EIWAQLRKKYIIEDAGAQ--------NFKMAEDKEVTSQIHGFHMLINDLKNENIILPES 108
++W L K+ + DAG++ ++KM +D+ V Q H ML +L+N N LP+
Sbjct: 8 DMWDALEAKFGVSDAGSELYVMEQFYDYKMVDDRSVVEQAHEIRMLAKELENNNYELPDK 67
Query: 109 F-----------------------------------MTIDQLEKAKEITSK-------AN 126
F + +++ +AK++ K AN
Sbjct: 68 FVAGGIIAKLPHSWSDFATSLKHKRPEFSVSDLIGSLGVEEKARAKDVRGKKVEGGSSAN 127
Query: 127 IV-KNEAHPSKNQKPNKKFFKNKKTT------FKKKKGNCYVCGKPGHFANKCRYRKGDH 179
+V K H S N K K K K T K KG+C+VCGK GH+A C RK D
Sbjct: 128 MVQKKNPHASHNNKKVKPDVKPKAVTNFKKKGKGKAKGDCFVCGKSGHWAKDCPERK-DR 186
Query: 180 KPPKANLVDGE 190
K AN+V E
Sbjct: 187 KS--ANMVISE 195
>gi|356571246|ref|XP_003553790.1| PREDICTED: uncharacterized protein LOC100800963 [Glycine max]
Length = 515
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 82/206 (39%), Gaps = 54/206 (26%)
Query: 24 QNWIKANKVCRSTILSTLSNELYDVYSQHKF-AYEIWAQLRKKYIIEDAGAQN------- 75
+ W+ + C ILS LS+ LY++Y+ K A ++W +L+ Y+ E+ G +
Sbjct: 297 RRWLNDDLTCHRNILSHLSDPLYNLYANRKLSAKDLWEELKLVYLYEEFGTKRYHVKKYL 356
Query: 76 -FKMAEDKEVTSQIHGFH----------MLIND---------------------LKNENI 103
F+M E+K V QI + M I+D L E
Sbjct: 357 EFQMVEEKAVIEQIRELNGMADSIAAAGMFIDDNFHVSAIISKLPPSWKDFCIKLMREEY 416
Query: 104 ILPESFMTIDQLEK-----AKEITSKANIVK------NEAHPSKNQKPNKKFFKNKKTTF 152
+ M Q+E+ K + +N ++ N H + KP +N ++
Sbjct: 417 LPYRKLMERIQIEEEYRYGVKRVVEHSNSMEGYHQAYNGGHRRADYKP-LGMCRN-RSEI 474
Query: 153 KKKKGNCYVCGKPGHFANKCRYRKGD 178
+ C VCGK GH + C +R+ D
Sbjct: 475 NARSVPCSVCGKRGHLSKHC-WRRND 499
>gi|16905204|gb|AAL31074.1|AC091749_3 putative polyprotein [Oryza sativa Japonica Group]
gi|31431192|gb|AAP53007.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 259
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 75/193 (38%), Gaps = 59/193 (30%)
Query: 37 ILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAG--------AQNFKMAEDKEVTSQI 88
IL L + L +VY A E+W L K+ DA ++KMA++ V Q
Sbjct: 65 ILGVLGDRLVEVYMHMTDAKELWDALHTKFGATDASNDLYIMEQFHDYKMADNHSVVEQA 124
Query: 89 HGFHMLINDLKNENIILPESFM---------------------------------TIDQL 115
H + L+ +LP+ F+ ++D
Sbjct: 125 HEIQTMAKKLELLKCVLPDKFVDGCIIAKLPPSWRSFGTALKHKRQEYSVEGLIASLDVE 184
Query: 116 EKAKE--ITSKANIVKNEA---HPSKNQKPNKKFFKNKKTTFK-----------KKKGNC 159
EK +E SK + ++ A H ++N+ K +K ++TT + + C
Sbjct: 185 EKTREKYAASKGDGGQSSANVVHKAQNKSKGK--YKAQQTTNFKKQKKNNNNPNQDERTC 242
Query: 160 YVCGKPGHFANKC 172
+VCG+PGH A KC
Sbjct: 243 FVCGQPGHLARKC 255
>gi|222630420|gb|EEE62552.1| hypothetical protein OsJ_17351 [Oryza sativa Japonica Group]
Length = 251
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 73/184 (39%), Gaps = 59/184 (32%)
Query: 55 AYEIWAQLRKKYIIEDAGA--------QNFKMAEDKEVTSQIHGFHMLINDLKNENIILP 106
A E+W L K+ DA +++MA+++ V Q H + +L+ +LP
Sbjct: 6 AKELWDALNTKFGATDASIDVYIMEQFHDYRMADNRSVVEQAHEIQTMAKELELLKCVLP 65
Query: 107 ESFM---------------------------------TIDQLEKAKE--ITSKANIVKNE 131
+ F+ ++D EKA+E SK + ++
Sbjct: 66 DKFVAGCIIAKLPPSWRSFGTALKHKRQEYSIEGLIASLDIEEKAREKDAASKGDGGQSS 125
Query: 132 A---HPSKNQKPNKKFFKNKKTTFK-----------KKKGNCYVCGKPGHFANKCRYRKG 177
A H + N+ K +K ++TT + +G C+VCG+PGH A KC R G
Sbjct: 126 ANVVHKAHNKSKGK--YKAQQTTNFKKQKKNNNNPNQDEGTCFVCGQPGHLARKCLQRMG 183
Query: 178 DHKP 181
P
Sbjct: 184 MKAP 187
>gi|356504175|ref|XP_003520874.1| PREDICTED: uncharacterized protein LOC100818901 [Glycine max]
Length = 558
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 50/95 (52%), Gaps = 9/95 (9%)
Query: 24 QNWIKANKVCRSTILSTLSNELYDVYSQHKF-AYEIWAQLRKKYIIEDAGAQN------- 75
+ W+ + C+ ILS LS+ LY++Y+ K A ++W +L+ Y+ E+ G +
Sbjct: 330 RRWLNDDLTCQRNILSHLSDPLYNLYANRKMSAKDLWEELKLVYLYEEFGTKRSQVKKYL 389
Query: 76 -FKMAEDKEVTSQIHGFHMLINDLKNENIILPESF 109
F+M E+K V QI + + + + I + ++F
Sbjct: 390 EFQMVEEKAVIEQIRELNGIADSIAAAGIFIDDNF 424
>gi|51038150|gb|AAT93953.1| hypothetical protein [Oryza sativa Japonica Group]
gi|51038210|gb|AAT94013.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 457
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 80/202 (39%), Gaps = 56/202 (27%)
Query: 28 KANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQNFKMAEDKEVTSQ 87
+A + ILS L + L +VY A E YI+E ++KMA+++ V Q
Sbjct: 160 EATTLFVGCILSVLGDRLVEVYMHMTDAKE----FNDLYIMEQF--HDYKMADNRSVVEQ 213
Query: 88 IHGFHMLINDLKNENIILPESFM---------------------------------TIDQ 114
H +L+ +LP+ F+ ++D
Sbjct: 214 AHEIQTTAKELELLKCVLPDKFVAGCTIAKLTPSWRGFGTALKHKRQEYSVEGLIASLDV 273
Query: 115 LEKAKE--ITSKAN---IVKNEAHPSKNQKPNKKFFKNKKTTFK----------KKKGNC 159
EKA+E SK + N H ++N+ K +K ++TT + + C
Sbjct: 274 EEKAREKDAASKGDGGQSTANVVHKAQNKSKGK--YKAQQTTNFKKKNNNNNPNQDERTC 331
Query: 160 YVCGKPGHFANKCRYRKGDHKP 181
+VCG+PG+ A KC RKG P
Sbjct: 332 FVCGQPGYLARKCPQRKGMKAP 353
>gi|38346266|emb|CAD39659.2| OSJNBa0074B10.16 [Oryza sativa Japonica Group]
Length = 1006
Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 94/207 (45%), Gaps = 38/207 (18%)
Query: 6 FLTEPPPDSDSENYEVLLQNWIKANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKK 65
FL EPP + E + ++ + R ++S L++ + DVY ++W L K
Sbjct: 164 FLGEPPLSPEEE------AKFEASDCLFRGALISVLADNIVDVYMHMPSGKDMWDALEAK 217
Query: 66 YIIEDAGAQNFKMAEDKEVTSQIHGFHM--LINDLKNE----NIILPESFMTIDQLEKAK 119
+ + +AG++ + M Q + + M LK++ ++ + +D+ +AK
Sbjct: 218 FGVSNAGSELYVM-------EQFYDYKMSDFATSLKHKRQKFSVTDLIGSLGVDEKARAK 270
Query: 120 -------EITSKANIVK----NEAHPSKNQKPNKKFFKNKKTTFKKKKG-----NCYVCG 163
E S AN+V+ + +H + N+K T FKKK +C+VCG
Sbjct: 271 DNRGKNIEGGSSANLVQKKNLHASHNNNNKKVKPNVKPKATTNFKKKGKGKAKGDCFVCG 330
Query: 164 KPGHFANKCRYRKGDHKPPKANLVDGE 190
KPGH+A C RK D K AN+V E
Sbjct: 331 KPGHWAKNCPDRK-DKK--SANMVISE 354
>gi|110288696|gb|ABB46939.2| retrotransposon protein, putative, Ty1-copia subclass, expressed
[Oryza sativa Japonica Group]
Length = 1085
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 82/186 (44%), Gaps = 38/186 (20%)
Query: 29 ANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQ--------NFKMAE 80
A+ + R ++S L++ + DVY ++W L+ K+ + DAG++ ++ M +
Sbjct: 97 ADCLFRGALISVLADSIVDVYMHMPSRKDMWDALQAKFRVSDAGSELYVMEQFYDYNMVD 156
Query: 81 DKEVTSQIHGFHMLI------NDL------KNENIILPESFMTIDQLEKAK--------- 119
D+ V Q ++ +D K + + + ++ EKA+
Sbjct: 157 DRSVVEQFVAGGIIAKLPPSWSDFATSLKHKRQEFSVTDLIGSLGVEEKARAKDNRGKKK 216
Query: 120 -EITSKANIV-KNEAHPSKNQKPNKKFFKNKKTT--FKKK-----KGNCYVCGKPGHFAN 170
+ S AN+V K H S N K K K T FKKK K + +VCGKPGH+A
Sbjct: 217 NDGGSSANLVQKKNPHASHNNKKKVKPDVKPKATTNFKKKGQGKAKVDFFVCGKPGHWAK 276
Query: 171 KCRYRK 176
C RK
Sbjct: 277 DCLDRK 282
>gi|24899398|gb|AAN64998.1| Putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|108707933|gb|ABF95728.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1040
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 20/118 (16%)
Query: 74 QNFKMAEDKEVTSQIHGFHMLINDLKNENIILPESFMTIDQLEKAKEITSKANIVKNEAH 133
++KMA+++ V Q H + +L+ +L D K S AN+V H
Sbjct: 254 HDYKMADNRSVVEQAHEIQTMAKELE----LLKRKLGKKDAASKGNGGKSTANVV----H 305
Query: 134 PSKNQKPNKKFFKNKKTTFK----------KKKGNCYVCGKPGHFANKCRYRKGDHKP 181
++N+ K +K ++TT + + C+VCG+PGH A KC RKG P
Sbjct: 306 KAQNKSKGK--YKAQQTTNFKKKNNNNNPNQDERTCFVCGQPGHLARKCPQRKGMKAP 361
>gi|4558683|gb|AAD22700.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 119
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 8/81 (9%)
Query: 26 WIKANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQ--------NFK 77
W + +C+ I S LS+ LY+VYS + + E+W L KKY +DAG+Q ++K
Sbjct: 39 WEHGDFMCKGYIQSRLSDPLYNVYSNVETSNELWDSLDKKYQTKDAGSQKYAAAKFLDYK 98
Query: 78 MAEDKEVTSQIHGFHMLINDL 98
M + + + Q+ L +D+
Sbjct: 99 MVDSRPMMVQVEELTCLFHDI 119
>gi|77552810|gb|ABA95606.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 999
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 8/91 (8%)
Query: 29 ANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQ--------NFKMAE 80
A+ + R ++S L++ + DVY ++W K+ + DA ++ ++KM +
Sbjct: 85 ADCLFRGALISVLADNIVDVYMHMPSRKDMWDAFEAKFGVSDASSELYVMEQFYDYKMVD 144
Query: 81 DKEVTSQIHGFHMLINDLKNENIILPESFMT 111
+ V Q H ML +L+N N LP+ F+
Sbjct: 145 GRSVVEQAHEIQMLAKELENNNCELPDKFVA 175
>gi|38345425|emb|CAD41546.2| OSJNBb0091E11.16 [Oryza sativa Japonica Group]
Length = 839
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 94/234 (40%), Gaps = 71/234 (30%)
Query: 9 EPPPDSDSENYEVLLQNWIKANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYII 68
EPP +++ N A+ L L++ + DVY ++W L K+ +
Sbjct: 16 EPPVNTNRGNI---------ASNSSGGPFLGVLADNIVDVYMHMPSGKDMWDALEAKFRV 66
Query: 69 EDAGAQNFKMAEDKEVTSQIHGFHMLI-NDLKNENIILPESFMT---------------- 111
DAG + + V Q + + M++ N+L+N N LP+ F+
Sbjct: 67 SDAGNELY-------VMEQFYDYKMMLANELENNNCELPDKFVVGGIIAKLPPSWSDFAT 119
Query: 112 -----------IDQL------EKAK---------EITSKANIV-KNEAHPS--KNQKPNK 142
ID + EKA+ E S AN+V K H S N K K
Sbjct: 120 SLKHKRQEFSVIDLIGSLGVEEKARAKENRGKNIEGGSSANLVQKKNPHASHNNNNKKVK 179
Query: 143 KFFKNKKTT------FKKKKGNCYVCGKPGHFANKCRYRKGDHKPPKANLVDGE 190
K K TT K KG+C+VCGKP H+A C RK D K AN+V E
Sbjct: 180 SDVKPKATTNFKKKGKGKAKGDCFVCGKPRHWAKNCPDRK-DKK--SANMVISE 230
>gi|16905159|gb|AAL31029.1|AC078948_13 putative reverse transcriptase [Oryza sativa Japonica Group]
Length = 398
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 76/196 (38%), Gaps = 67/196 (34%)
Query: 37 ILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAG--------AQNFKMAEDKEVTSQI 88
ILS L + L +VY A E+W L K+ DA ++KMA+++ V Q
Sbjct: 34 ILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMADNRSVVEQA 93
Query: 89 HGFHMLINDLKNENIILPESFM---------------------------------TIDQL 115
H + + + +LP+ F+ ++D
Sbjct: 94 HEIQTMAKEFELLKCVLPDKFVDGCIIAKLPPSWRGFGTALKHKRQEYSVEGLIASLDVE 153
Query: 116 EKAKE---------ITSKANIVKNEAHPSKNQKPNKKFFKNKKTT----------FKKKK 156
EKA+E S AN+V H ++N+ K +K ++TT + +
Sbjct: 154 EKAREKDVAFKGDGGQSTANVV----HTAQNKSKGK--YKAQQTTNFKKKNNNNNPNQDE 207
Query: 157 GNCYVCGKPGHFANKC 172
C+VC +PGH A KC
Sbjct: 208 RTCFVC-QPGHLARKC 222
>gi|48475173|gb|AAT44242.1| putative ubiquitin carrier protein [Oryza sativa Japonica Group]
Length = 974
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 69/171 (40%), Gaps = 34/171 (19%)
Query: 37 ILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQNFKMAEDKEVTSQIHGFHMLIN 96
ILS L + L +VY A E YI+E ++KM +++ V Q H +
Sbjct: 65 ILSVLGDRLVEVYMHMTDAKE----FNDLYIMEQF--HDYKMVDNRSVVEQAHEIQTMAK 118
Query: 97 DLKNENIILPESFM--------------------------TIDQLEKAKEITSKANIVKN 130
+L+ +LP+ F+ +++ L + ++ KA +
Sbjct: 119 ELELLKCVLPDKFVAGCIIAKLPPSWRGFGTALKHKRQEYSVEGLIASLDVEEKAR--EK 176
Query: 131 EAHPSKNQKPNKKFFKNKKTTFKKKKGNCYVCGKPGHFANKCRYRKGDHKP 181
+A + + KN + + C+VCG+PGH A KC RKG P
Sbjct: 177 DAASKGDGGQSTANKKNNNNNPNQDERTCFVCGQPGHLARKCPQRKGMKAP 227
>gi|116317928|emb|CAH65951.1| H0716A07.9 [Oryza sativa Indica Group]
Length = 1216
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 67/163 (41%), Gaps = 13/163 (7%)
Query: 28 KANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAG--------AQNFKMA 79
+A + ILS L + L +VY A E+W L K+ DA ++KMA
Sbjct: 56 EATTLFVGCILSVLGDRLIEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMA 115
Query: 80 EDKEVTSQIHGFHMLINDLKNENIILPESFMTIDQLEKA-KEITSKANIVKNEAHPSKNQ 138
+++ V Q H + +L+ +LP+ F+ + K S +K++ H +
Sbjct: 116 DNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKVPPSWRSFGTALKHKRH----E 171
Query: 139 KPNKKFFKNKKTTFKKKKGNCYVCGKPGHFANKCRYRKGDHKP 181
+ + K ++ + G GH A KC RKG P
Sbjct: 172 YSVEGLIASLDVEEKAREKDAASKGDVGHLARKCPQRKGMKAP 214
>gi|77553336|gb|ABA96132.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1357
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 83/187 (44%), Gaps = 33/187 (17%)
Query: 34 RSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQNFKMAE-------DKEVTS 86
R ++S L++ + DVY ++W L K+ + DAG++ + M + DK V
Sbjct: 160 RGALISVLADNIVDVYMHMPSGKDMWDALEAKFGVSDAGSELYVMEQFYDYKMPDKFVAG 219
Query: 87 QI-----HGFHMLINDLKN--ENIILPESFMTIDQLEKAK---------EITSKANIV-K 129
I + LK+ + +P+ ++ EKA+ E S AN+V K
Sbjct: 220 GIIAKLPPSWSDFATSLKHKRQEFSVPDLIGSLGVEEKARANDVRGKKVEGGSSANMVQK 279
Query: 130 NEAHPSKNQKPNKKFFKNKKTT------FKKKKGNCYVCGKPGHFANKCRYRKGDHKPPK 183
H S N K K K K T K KG+C+VCGK GH+A C RK D K
Sbjct: 280 KNPHASHNNKKVKPDVKPKAATNFKKKGKGKAKGDCFVCGKSGHWAKDCPERK-DRK--S 336
Query: 184 ANLVDGE 190
AN++ E
Sbjct: 337 ANMIISE 343
>gi|30678785|ref|NP_567205.2| zinc knuckle (CCHC-type) family protein [Arabidopsis thaliana]
gi|26451026|dbj|BAC42619.1| unknown protein [Arabidopsis thaliana]
gi|29028884|gb|AAO64821.1| At4g00980 [Arabidopsis thaliana]
gi|332656563|gb|AEE81963.1| zinc knuckle (CCHC-type) family protein [Arabidopsis thaliana]
Length = 488
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 63/129 (48%), Gaps = 20/129 (15%)
Query: 1 MNLAEFLTEPPPDSDSEN-----------YEVLLQNWIKANKVCRSTILSTLSNELYDVY 49
+ L L+EP P S + + W++ + +C + ++++LS+ LY Y
Sbjct: 217 LKLTYVLSEPCPSIGSSQGPETNPREITRADATGKKWLRDDYLCYTHLMNSLSDHLYRRY 276
Query: 50 SQ-HKFAYEIWAQLRKKYIIEDAGAQN--------FKMAEDKEVTSQIHGFHMLINDLKN 100
SQ K A E+W +L+ Y +++ ++ F+M E++ + Q+ F+ + + + +
Sbjct: 277 SQKFKHAKELWDELKWVYQCDESKSKRSQVRKYIEFRMVEERPILEQVQVFNKIADSIVS 336
Query: 101 ENIILPESF 109
+ L E+F
Sbjct: 337 AGMFLDEAF 345
>gi|13786449|gb|AAK39574.1|AC025296_9 putative retrotransposon polyprotein [Oryza sativa Japonica Group]
Length = 208
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 72/177 (40%), Gaps = 57/177 (32%)
Query: 57 EIWAQLRKKYIIEDAGAQ--------NFKMAEDKEVTSQIHGFHMLINDLKNENIILPES 108
++W L K+ + DAG++ ++KM +D+ V Q + ML +L+N N LP+
Sbjct: 8 DMWDALEAKFGVSDAGSELYVMEQFYDYKMVDDRSVVEQAYEIQMLAKELENNNCELPDK 67
Query: 109 F-----------------------------------MTIDQLEKAK-------EITSKAN 126
F + +++ +AK E S AN
Sbjct: 68 FVAGGIIAKLPPSWSDLATSLKHKRQEFSVPDLIGSLGVEEKARAKYVRGKKVEGGSSAN 127
Query: 127 IV-KNEAHPSKNQKPNKKFFKNKKTT------FKKKKGNCYVCGKPGHFANKCRYRK 176
+V K H S N K K K K T K KG+C+VCGK GH+A C RK
Sbjct: 128 MVQKKNPHASHNNKKVKPDVKPKAATNFKKKGKGKAKGDCFVCGKSGHWAKDCPERK 184
>gi|16905177|gb|AAL31047.1|AC078893_10 putative polyprotein [Oryza sativa Japonica Group]
Length = 866
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 79/205 (38%), Gaps = 67/205 (32%)
Query: 28 KANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAG--------AQNFKMA 79
+A + ILS L + L +VY A E+W L K+ DA ++KMA
Sbjct: 25 EATTLFVGCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMA 84
Query: 80 EDKEVTSQIHGFHMLINDLKNENIILPESFM----------------------------- 110
+++ V Q H + + + +LP+ F+
Sbjct: 85 DNRSVVEQAHEIQTMAKEFELLKCVLPDKFVDGCIIAKLPPSWRGFGTALKHKRQEYSVE 144
Query: 111 ----TIDQLEKAKE---------ITSKANIVKNEAHPSKNQKPNKKFFKNKKTT------ 151
++D EKA+E S AN+V H ++N+ K +K ++TT
Sbjct: 145 GLIASLDVEEKAREKDVAFKGDGGQSTANVV----HTAQNKSKGK--YKAQQTTNFKKKN 198
Query: 152 ----FKKKKGNCYVCGKPGHFANKC 172
+ + C+VC +PGH A KC
Sbjct: 199 NNNNPNQDERTCFVC-QPGHLARKC 222
>gi|110289247|gb|AAP54258.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 879
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 79/205 (38%), Gaps = 67/205 (32%)
Query: 28 KANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAG--------AQNFKMA 79
+A + ILS L + L +VY A E+W L K+ DA ++KMA
Sbjct: 25 EATTLFVGCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMA 84
Query: 80 EDKEVTSQIHGFHMLINDLKNENIILPESFM----------------------------- 110
+++ V Q H + + + +LP+ F+
Sbjct: 85 DNRSVVEQAHEIQTMAKEFELLKCVLPDKFVDGCIIAKLPPSWRGFGTALKHKRQEYSVE 144
Query: 111 ----TIDQLEKAKE---------ITSKANIVKNEAHPSKNQKPNKKFFKNKKTT------ 151
++D EKA+E S AN+V H ++N+ K +K ++TT
Sbjct: 145 GLIASLDVEEKAREKDVAFKGDGGQSTANVV----HTAQNKSKGK--YKAQQTTNFKKKN 198
Query: 152 ----FKKKKGNCYVCGKPGHFANKC 172
+ + C+VC +PGH A KC
Sbjct: 199 NNNNPNQDERTCFVC-QPGHLARKC 222
>gi|31712063|gb|AAP68369.1| putative polyprotein, 3'-partial [Oryza sativa Japonica Group]
Length = 691
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 77/192 (40%), Gaps = 59/192 (30%)
Query: 37 ILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAG--------AQNFKMAEDKEVTSQI 88
ILS L + L +VY A E+W L K+ DA ++KMA+++ V Q
Sbjct: 65 ILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMADNRSVVEQA 124
Query: 89 HGFHMLINDLKNENIILPESFM---------------------------------TIDQL 115
H + +L+ +LP+ F+ ++D
Sbjct: 125 HEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYSVEGLIASLDVE 184
Query: 116 EKAKE--ITSKANIVKNEA---HPSKNQKPNKKFFKNKKTT-----------FKKKKGNC 159
EKA+E SK + ++ A H ++N+ K +K ++TT + + C
Sbjct: 185 EKAREKDAASKGDGGQSSANVVHKAQNKSKGK--YKAQQTTNFKKQKKNNNNPNQDERTC 242
Query: 160 YVCGKPGHFANK 171
+VCG+ GH A K
Sbjct: 243 FVCGQVGHLARK 254
>gi|2252849|gb|AAB62847.1| contains similarity to gag proteins [Arabidopsis thaliana]
gi|7267595|emb|CAB80907.1| AT4g00980 [Arabidopsis thaliana]
Length = 462
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 26 WIKANKVCRSTILSTLSNELYDVYSQ-HKFAYEIWAQLRKKYIIEDAGAQN--------F 76
W++ + +C + ++++LS+ LY YSQ K A E+W +L+ Y +++ ++ F
Sbjct: 227 WLRDDYLCYTHLMNSLSDHLYRRYSQKFKHAKELWDELKWVYQCDESKSKRSQVRKYIEF 286
Query: 77 KMAEDKEVTSQIHGFHMLINDLKNENIILPESF 109
+M E++ + Q+ F+ + + + + + L E+F
Sbjct: 287 RMVEERPILEQVQVFNKIADSIVSAGMFLDEAF 319
>gi|116634841|emb|CAH67291.1| OSIGBa0103O01.9 [Oryza sativa Indica Group]
Length = 857
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 84/206 (40%), Gaps = 62/206 (30%)
Query: 37 ILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQNFKMAEDKEVTSQIHGFHMLI- 95
L L++ + DVY ++W L K+ + DAG++ + M Q + + M++
Sbjct: 35 FLGVLTDNIVDVYMHMPSGKDMWDTLEAKFGVSDAGSELYIM-------EQFYDYKMMLA 87
Query: 96 NDLKNENIILPESFMT---------------------------IDQL------EKAK--- 119
+L+N N LP+ F+ ID + EKA+
Sbjct: 88 KELENNNCELPDKFVVGDITAKLPPSWSDFATSLKHKRQEFSVIDLIGSLGVEEKARAKE 147
Query: 120 ------EITSKANIV-KNEAHPS--KNQKPNKKFFKNKKTT------FKKKKGNCYVCGK 164
E S AN+V K H S N K K K K TT KG+C+VCGK
Sbjct: 148 NRGKNIEGGSSANLVQKKNPHASHNNNNKKVKSDVKPKATTNFKKKGKGNAKGDCFVCGK 207
Query: 165 PGHFANKCRYRKGDHKPPKANLVDGE 190
P H+A C RK D K AN+V E
Sbjct: 208 PRHWAKNCPDRK-DKK--SANMVISE 230
>gi|4587604|gb|AAD25832.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 128
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 12/96 (12%)
Query: 1 MNLAEFLTEPPPDSDSENYEVL----LQNWIKANKVCRSTILSTLSNELYDVYSQHKFAY 56
+N+ +LTE PP V + W + + C+ IL+ L ++ + +Y++ K +
Sbjct: 31 INMERYLTEDPPTVPQGTTNVYAVGSMNTWAQGDYCCKGLILNRLVHDRFGLYNKSKSSK 90
Query: 57 EIWAQLRKKYIIEDAGAQ--------NFKMAEDKEV 84
+W L KY +++G Q NFKM + K++
Sbjct: 91 TLWLALENKYKTDESGRQRFSTTKFLNFKMVDSKQI 126
>gi|38566588|gb|AAR24184.1| At2g04460 [Arabidopsis thaliana]
gi|40823945|gb|AAR92317.1| At2g04460 [Arabidopsis thaliana]
gi|51971565|dbj|BAD44447.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|159507375|gb|ABW97710.1| putative signaling protein [Arabidopsis thaliana]
gi|159507378|gb|ABW97711.1| putative signaling protein [Arabidopsis thaliana]
Length = 148
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 12/96 (12%)
Query: 1 MNLAEFLTEPPPDSDSENYEVL----LQNWIKANKVCRSTILSTLSNELYDVYSQHKFAY 56
+N+ +LTE PP V + W + + C+ IL+ L ++ + +Y++ K +
Sbjct: 51 INMERYLTEDPPTVPQGTTNVYAVGSMNTWAQGDYCCKGLILNRLVHDRFGLYNKSKSSK 110
Query: 57 EIWAQLRKKYIIEDAGAQ--------NFKMAEDKEV 84
+W L KY +++G Q NFKM + K++
Sbjct: 111 TLWLALENKYKTDESGRQRFSTTKFLNFKMVDSKQI 146
>gi|108706869|gb|ABF94664.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1286
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 85/206 (41%), Gaps = 60/206 (29%)
Query: 34 RSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQNFKMAEDKEVTSQIHGFHM 93
R ++S L++ + DV S A + Y++E ++KM +D+ V Q H M
Sbjct: 224 RGALISVLADNIVDVPSSESDAGS------ELYVMEQF--YDYKMVDDRSVVEQAHEIQM 275
Query: 94 LINDLKNENIILPESF-----------------------------------MTIDQLEKA 118
L +L+N N LP+ F + +++ +A
Sbjct: 276 LAKELENNNCELPDKFVAGGIIAKLPPSWSDFATSLKHKRQEFSVPDLIGSLGVEEKARA 335
Query: 119 KEITSK-------ANIV-KNEAHPSKNQKPNKKFFKNKKTT------FKKKKGNCYVCGK 164
K+I K AN+V K H S N K K K K T K KG+C+VCGK
Sbjct: 336 KDIRGKKVEGGSSANMVQKKNPHASHNNKKVKPDVKPKAATNFKKKGKGKAKGDCFVCGK 395
Query: 165 PGHFANKCRYRKGDHKPPKANLVDGE 190
GH+A C RK D K AN++ E
Sbjct: 396 SGHWAKDCLERK-DRK--SANMIISE 418
>gi|38344704|emb|CAE05246.2| OSJNBb0115I09.8 [Oryza sativa Japonica Group]
Length = 295
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 83/206 (40%), Gaps = 60/206 (29%)
Query: 34 RSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAG--------AQNFKMAEDKEVT 85
R T+ T + + + VY A E+W L K+ DA ++KMA+++ +
Sbjct: 24 RVTLWLT-AMKCFWVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMADNRSIV 82
Query: 86 SQIHGFHMLINDLKNENIILPESFM---------------------------------TI 112
Q H + +L+ +LP+ F+ ++
Sbjct: 83 EQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLSPSWRSFGTALKHKRQEYSVEGLIASL 142
Query: 113 DQLEKAKE--ITSKANIVKNEA---HPSKNQKPNKKFFKNKKTTFK-----------KKK 156
D EKA+E SK + ++ A H ++N+ K +K ++TT + +
Sbjct: 143 DVEEKAQEKDAASKGDGGQSSANVVHKAQNKSKGK--YKAQQTTNFKKQKKNNNNPNQDE 200
Query: 157 GNCYVCGKPGHFANKCRYRKGDHKPP 182
C+VCG+ GH A+KC RKG P
Sbjct: 201 WTCFVCGQLGHLASKCPQRKGMKTPA 226
>gi|357129399|ref|XP_003566349.1| PREDICTED: uncharacterized protein LOC100838984 [Brachypodium
distachyon]
Length = 290
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 46/92 (50%), Gaps = 8/92 (8%)
Query: 28 KANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQ--------NFKMA 79
K + ++ ++S L + + D Y ++W L +K+ + DAG++ ++KM
Sbjct: 92 KLDTTFKAALISILGDNIVDSYLSFNNCKDMWDALERKFGVSDAGSELYVMKQFYDYKMV 151
Query: 80 EDKEVTSQIHGFHMLINDLKNENIILPESFMT 111
ED+ + Q H L +L++ +LP+ F+
Sbjct: 152 EDRPIVEQAHEIQSLAKELEHFTCVLPDKFVA 183
>gi|125561581|gb|EAZ07029.1| hypothetical protein OsI_29277 [Oryza sativa Indica Group]
Length = 217
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 51/117 (43%), Gaps = 17/117 (14%)
Query: 9 EPPPDSDSENYE---VLLQNWIKANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKK 65
+PPP + E + + W + + VCR IL+ LS+ ++ Y +H+ A + W
Sbjct: 42 DPPPPAGVEEEDGDAAARRMWARDDAVCRGHILAALSDRIFPDYVRHRTARDAW------ 95
Query: 66 YIIEDAGAQNFKMAEDKEVTSQIHGFHMLINDLKNENIILPESFMTIDQLEKAKEIT 122
DA A+ + A+ +Q ML +DL + L E + L A +T
Sbjct: 96 ----DAVARTYDNADAASAVTQ----RMLYDDLALDGAPLLERIARAEALNAATRVT 144
>gi|147792513|emb|CAN65627.1| hypothetical protein VITISV_032735 [Vitis vinifera]
Length = 1285
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 86/197 (43%), Gaps = 34/197 (17%)
Query: 3 LAEFLTEPPPDSDSENYEVLLQNWIKANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQL 62
L+E E P + +++ Q W+KA+++ R IL+++SN L + + Y+I L
Sbjct: 41 LSEVCLEKPGEGATQDQIKAHQKWVKADEMARCYILASMSNVLQHQHQKMDTTYDILENL 100
Query: 63 RKKYIIEDAGAQ--------NFKMAEDKEVTSQIHGFHMLINDLKNENIILPESFMTIDQ 114
++ + + + + KM E +V + + L+ND++ ++ E +D+
Sbjct: 101 KEMFGDQTSAVRQNALREILTSKMEEGTQVRTHVLKMMSLLNDME---VLGAE----VDK 153
Query: 115 LEKAKEITSKANIVKNEAHP---------SKNQKPNKKFFKNKKT----------TFKKK 155
+ + + + I+K A P S QK KK K KK
Sbjct: 154 ATQIEMLVAAETIIKQGATPVVLNIERASSSVQKKGKKKKNVKLNNNGATNGVNGVVKKP 213
Query: 156 KGNCYVCGKPGHFANKC 172
KG C+ C +PGH+ +C
Sbjct: 214 KGKCFHCKQPGHWKLQC 230
>gi|29788833|gb|AAP03379.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|50881449|gb|AAT85294.1| Gag and Pol protein, putative [Oryza sativa Japonica Group]
gi|108710326|gb|ABF98121.1| retrotransposon protein, putative, Ty1-copia subclass, expressed
[Oryza sativa Japonica Group]
Length = 216
Score = 45.8 bits (107), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 8/63 (12%)
Query: 57 EIWAQLRKKYIIEDAGAQ--------NFKMAEDKEVTSQIHGFHMLINDLKNENIILPES 108
++W L K+ + DAG++ ++KM +D+ + Q H ML+ +L+N N LP+
Sbjct: 75 DMWGALEAKFGVSDAGSELYVMEQFYDYKMVDDRSIVEQAHEIQMLVKELENNNCELPDK 134
Query: 109 FMT 111
F+
Sbjct: 135 FVV 137
>gi|110288918|gb|ABG66024.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 846
Score = 45.8 bits (107), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 75/166 (45%), Gaps = 27/166 (16%)
Query: 34 RSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQ--------NFKMAEDKEVT 85
R ++S L++ + DVY ++W L K+ + DAG++ ++KM +D +
Sbjct: 80 RGALISVLADNIVDVYMHMPSGKDMWDALEAKFGVSDAGSELYVMEQFYDYKMVDDCGII 139
Query: 86 SQI----HGFHMLINDLKNE--------NIILPESFMTIDQLEKAKEITSKANIV-KNEA 132
+++ GF + + + E ++ + E D K E S AN+V K
Sbjct: 140 AKLPPSWSGFAISLKHKRQEFSVSDLIGSLGVEEKARAKDNRGKKVEGGSSANMVQKKNP 199
Query: 133 HPSKNQKPNKKFFKNKKTT------FKKKKGNCYVCGKPGHFANKC 172
H S N K K K K TT K KG+ +VCGK GH+A C
Sbjct: 200 HASHNNKKVKPDVKPKATTNFKKKGKGKAKGDRFVCGKSGHWAKDC 245
>gi|108707890|gb|ABF95685.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1061
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 86/209 (41%), Gaps = 62/209 (29%)
Query: 34 RSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQNFKMAEDKEVTSQIHGFHM 93
R ++S L++ + DVY ++W L K+ + DA ++ + M Q + + M
Sbjct: 150 RGALISVLTDNIVDVYMHMPSGKDMWDALEAKFGVSDAVSELYVM-------EQFYDYKM 202
Query: 94 LI-NDLKNENIILPESFMT------------------------------IDQL---EKAK 119
++ + +N N LP+ F+ I L EKA+
Sbjct: 203 MLAKEFENNNCELPDKFVAGGIIAKLPPSWSDFATSLKHKRQEFSVTDLIGSLGVEEKAR 262
Query: 120 ---------EITSKANIVK----NEAHPSKNQKPNKKFFKNKKTTFKKKKG-----NCYV 161
E S AN+V+ + +H + N+K T FKKK +C+V
Sbjct: 263 VKDNRGKNIEGGSSANLVQKKNPHASHNNNNKKVKPDVKPKATTNFKKKGKGKAKGDCFV 322
Query: 162 CGKPGHFANKCRYRKGDHKPPKANLVDGE 190
CGKPGH+A C RK D K AN+V E
Sbjct: 323 CGKPGHWAKNCPDRK-DKK--SANMVISE 348
>gi|224064265|ref|XP_002301412.1| predicted protein [Populus trichocarpa]
gi|222843138|gb|EEE80685.1| predicted protein [Populus trichocarpa]
Length = 459
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 45/222 (20%), Positives = 88/222 (39%), Gaps = 51/222 (22%)
Query: 8 TEPPPDSDS-ENYEVLLQNWIKANKVCRSTILSTLSNELYDVYSQH-KFAYEIWAQLRKK 65
T PP ++ + Q W + +CR IL++LS+ +Y Y++ K A E+W L+
Sbjct: 232 TSPPASAEEIAQAKATEQKWCNDDHLCRLNILNSLSDSIYYKYAKKIKTAKELWEDLKLV 291
Query: 66 YIIEDAGAQN--------FKMAEDKEVTSQIHGFHMLINDLKNENIILPESF-------- 109
Y+ E+ G + F+M ++K + Q+ + + + + + + E+F
Sbjct: 292 YLYEEFGTKRSQVKKYIEFQMVDEKSIFDQLQELNGIADAIVAAGMFIDENFHVSTVISK 351
Query: 110 ---------------------MTIDQLEKAKEITSKANIVKNE----AHPSKNQKPNKKF 144
+ +D++ +E ++ + + +H K P +
Sbjct: 352 LPPSWKDFCMKLMHEEYLPFWILMDRVRAEEESRNQDKLGEPSNHVHSHHPKYLGPRIRD 411
Query: 145 FKNKKTTFKK--------KKGNCYVCGKPGHFANKCRYRKGD 178
K +K+ K CY CGK GH + C +K D
Sbjct: 412 MKKPGLHWKRRDIEVDNNKSLTCYFCGKKGHISKHCPDKKFD 453
>gi|14719283|gb|AAK73108.1|AF391808_10 Fourf gag/pol protein [Zea mays]
gi|168251067|gb|ACA21850.1| Fourf gag/pol protein [Zea mays]
Length = 1279
Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 78/216 (36%), Gaps = 59/216 (27%)
Query: 34 RSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQ--------NFKMAEDKEVT 85
R ++S L + Y E+W L K+ + DAG++ ++KM E++ V
Sbjct: 37 RGAVISALDTKFQKSYIILPTGKELWDALVGKFGVTDAGSELYLMEQLYDYKMVENRSVV 96
Query: 86 SQIHGFHMLINDLKNENIILPESFM---------------------------------TI 112
Q H F L +L+ LP+ F+ T+
Sbjct: 97 EQAHEFQALAKELELFPCPLPDKFVAGGIIAKLPPSWKDFATSLKHKRQEFNVEELIGTL 156
Query: 113 DQLEKAKEI-------TSKANIVKNE-----------AHPSKNQKPNKKFFKNKKTTFKK 154
D E+A+ TS AN+V+ P KP KK K
Sbjct: 157 DVEERARTKDSGKGVETSTANVVQKRNFRKFNKKKNQNKPENANKPVHTAQFKKKNNNNK 216
Query: 155 KKGNCYVCGKPGHFANKCRYRKGDHKPPKANLVDGE 190
KG C+VCG H+A +C RK AN+V E
Sbjct: 217 GKGGCFVCGSDQHWARECPDRKFTQDKKSANVVTTE 252
>gi|16905175|gb|AAL31045.1|AC078893_8 putative polyprotein [Oryza sativa Japonica Group]
Length = 1280
Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 69/154 (44%), Gaps = 21/154 (13%)
Query: 35 STILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQ--------NFKMAEDKEV-T 85
++S L++ + DVY ++W L K+ + DAG++ ++K+ +D+ V
Sbjct: 191 GALISVLADNIVDVYMHMPSEKDMWDALEAKFGVSDAGSELYVMEQFYDYKIVDDRSVHK 250
Query: 86 SQIHGFHMLINDLKNENIILPESFMTIDQLEKAKEITSKANIVKNE-AHPSKNQKPNKKF 144
Q LI L E E D K E S AN+V+ + H S N K K
Sbjct: 251 RQEFSVSDLIGSLGVE-----EKARAKDVRGKKVEGGSSANMVQRKNPHASHNNKKVKPD 305
Query: 145 FKNKKTT------FKKKKGNCYVCGKPGHFANKC 172
K K T K KG+C+VCGK GH+A C
Sbjct: 306 VKPKAATNCKKKGKGKAKGDCFVCGKSGHWAKDC 339
>gi|110289248|gb|ABB47787.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1288
Score = 44.7 bits (104), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 69/154 (44%), Gaps = 21/154 (13%)
Query: 35 STILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQ--------NFKMAEDKEV-T 85
++S L++ + DVY ++W L K+ + DAG++ ++K+ +D+ V
Sbjct: 191 GALISVLADNIVDVYMHMPSEKDMWDALEAKFGVSDAGSELYVMEQFYDYKIVDDRSVHK 250
Query: 86 SQIHGFHMLINDLKNENIILPESFMTIDQLEKAKEITSKANIVKNE-AHPSKNQKPNKKF 144
Q LI L E E D K E S AN+V+ + H S N K K
Sbjct: 251 RQEFSVSDLIGSLGVE-----EKARAKDVRGKKVEGGSSANMVQRKNPHASHNNKKVKPD 305
Query: 145 FKNKKTT------FKKKKGNCYVCGKPGHFANKC 172
K K T K KG+C+VCGK GH+A C
Sbjct: 306 VKPKAATNCKKKGKGKAKGDCFVCGKSGHWAKDC 339
>gi|147769336|emb|CAN74773.1| hypothetical protein VITISV_005245 [Vitis vinifera]
Length = 125
Score = 44.7 bits (104), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 7/86 (8%)
Query: 78 MAEDKEVTSQIHGFHMLINDLKNENIILPESFMTIDQLEKAKEI---TSKANIVKNEAHP 134
M +D++V SQIH +H+ INDL E+I LPE F+ Q K I SKAN+ + E
Sbjct: 1 MTKDRDVLSQIHDYHLWINDLAIEDIKLPEHFVA-AQCRHRKRIEKSNSKANLAEAEVIT 59
Query: 135 ---SKNQKPNKKFFKNKKTTFKKKKG 157
S + + F + ++T KG
Sbjct: 60 TVISSEEGEEQVFMVDSRSTPVIGKG 85
>gi|440635344|gb|ELR05263.1| hypothetical protein GMDG_07246 [Geomyces destructans 20631-21]
Length = 243
Score = 43.9 bits (102), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 140 PNKKFFKNKKTTFKKKKGNCYVCGKPGHFANKC 172
P + KT GNC+ CGKPGHF +KC
Sbjct: 173 PKPTMLERVKTAVPASSGNCFKCGKPGHFQDKC 205
>gi|78708356|gb|ABB47331.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1022
Score = 43.9 bits (102), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 78/208 (37%), Gaps = 73/208 (35%)
Query: 34 RSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQNFKMAEDKEVTSQIHGFHM 93
R ++S L+N + DVY ++W L K+ + H M
Sbjct: 125 REALISVLANNIVDVYMHIPSGKDMWGVLEAKF--------------------EAHEIQM 164
Query: 94 LINDLKNENIILPESF-----------------------------------MTIDQLEKA 118
LI +L+N + LP+ F + I++ +A
Sbjct: 165 LIKELENNHCELPDKFVAGGIIAKLPPSWSDFATSLKHKRQEFSVTDLIGSLGIEEKARA 224
Query: 119 K-------EITSKANIV-KNEAHPSKNQKPNKKFFKNKKTT-------FKKKKGNCYVCG 163
K E S AN+V KN H S N K K T K KG+C+VCG
Sbjct: 225 KDNRGKKIEGGSSANLVQKNNPHASHNNNKKVKPDVKPKATTNFKKKGKGKAKGDCFVCG 284
Query: 164 KPGHFANKCRYRKGDHKPPKANLVDGED 191
KPGH+A C RK D K AN+V E+
Sbjct: 285 KPGHWAKDCPERK-DKK--SANMVISEE 309
>gi|281201718|gb|EFA75926.1| Polyprotein [Polysphondylium pallidum PN500]
Length = 904
Score = 43.9 bits (102), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
Query: 93 MLINDLKNENIILPESFMTIDQLEKAKEITSKANIVKNEAHPSKNQKPNKKF-FKNKKTT 151
M + DL I L +SF T + +I + + K E P+ + K+F K+ K +
Sbjct: 156 MRMTDLDTTPIPLSQSFYT----AQPSKIPVPSQMKKKEETPTMAMEVKKRFDRKSGKPS 211
Query: 152 FKKKKGNCYVCGKPGHFANKCRYRKGD 178
K +G+C+ CG+PGHF C D
Sbjct: 212 QAKPRGSCFKCGQPGHFRKDCPLNNND 238
>gi|4773900|gb|AAD29770.1|AF074021_2 putative transposon protein [Arabidopsis thaliana]
gi|7267214|emb|CAB80821.1| putative transposon protein [Arabidopsis thaliana]
Length = 590
Score = 43.9 bits (102), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 103 IILPESF-MTIDQLEKAKEITSKANIVKNEAHPSKNQKPNKKFFKNKKTTFKKKKGN--- 158
I LP+ F + + +++ K++TS + + KN + + K K ++ GN
Sbjct: 141 ISLPKRFDIIVAMMKQTKDLTSLSAGKWCDVCERKNHNESDCWMKKNKGVLSQQVGNNER 200
Query: 159 -CYVCGKPGHFANKCRYRKGDH 179
C+VC KPGH A CR R+ +
Sbjct: 201 RCFVCNKPGHLAKNCRLRRTER 222
>gi|53749480|gb|AAU90333.1| Putative gag and pol polyprotein, identical [Solanum demissum]
Length = 853
Score = 43.9 bits (102), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 4/49 (8%)
Query: 156 KGNCYVCGKPGHFANKCRYRKGDHKPPKANLVDGEDIIVAVVVTQENMV 204
KG C+VCGK GH A CR+RK P+AN+ E+ VA V+T NMV
Sbjct: 107 KGPCFVCGKSGHIARFCRFRKRGPN-PQANVT--EEPFVA-VITDINMV 151
>gi|77554665|gb|ABA97461.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 220
Score = 43.5 bits (101), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
Query: 28 KANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAG--------AQNFKMA 79
+A + ILS LS+ L +VY A E+W L K+ DA ++KMA
Sbjct: 56 EATTLFVGCILSVLSDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMA 115
Query: 80 EDKEVTSQIHGFHMLINDLKNENIILPESFMT 111
+++ V Q H + +L+ +LP+ F+
Sbjct: 116 DNRSVVKQAHEIQTMAKELELLKCVLPDKFVA 147
>gi|332308937|ref|YP_004442827.1| polyprotein [Banana streak UI virus]
gi|331029454|gb|AEC49877.1| polyprotein [Banana streak UI virus]
Length = 1837
Score = 43.5 bits (101), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 13/78 (16%)
Query: 122 TSKANIVKNEAHPSKNQKPNKKFFKNKKTTFKKKKGNCYVCGKPGHFANKCRYRKGDHKP 181
T + K + H + + KK+ + +K K CYVCG+ GHFA +CR +K +
Sbjct: 719 TRRTTTYKGKPHKTHARIDKKKYLQGRK-----KDCRCYVCGEEGHFAKECRSKKRIQE- 772
Query: 182 PKANLV------DGEDII 193
+ N+V DG DII
Sbjct: 773 -RVNIVQELDIPDGYDII 789
>gi|218194360|gb|EEC76787.1| hypothetical protein OsI_14890 [Oryza sativa Indica Group]
Length = 330
Score = 43.5 bits (101), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 68/169 (40%), Gaps = 56/169 (33%)
Query: 75 NFKMAEDKEVTSQIHGFHMLINDLKNENIILPESF------------------------- 109
++KM +D+ V Q H ML +L+N N LP+ F
Sbjct: 6 DYKMVDDRSVVEQAHEIQMLAKELENNNCELPDKFVAGGIIAKLPPSWSDFATSLKHKRQ 65
Query: 110 ----------MTIDQLEKAKEITSK-------ANIV-KNEAHPSKNQKPNKKFFK----- 146
+ +++ +AK++ K AN V K H S N K K K
Sbjct: 66 EFSVSDLIGSLGVEEKARAKDVRGKKVEGGSSANKVQKKNPHASHNNKKVKPDVKPDVKP 125
Query: 147 NKKTTFKKKKG-----NCYVCGKPGHFANKCRYRKGDHKPPKANLVDGE 190
N T FKKK +C+VCGK GH+A C RK D K AN+V E
Sbjct: 126 NAATNFKKKGKGKAKGDCFVCGKSGHWAKDCPERK-DRK--SANMVISE 171
>gi|440638213|gb|ELR08132.1| hypothetical protein GMDG_02954 [Geomyces destructans 20631-21]
Length = 201
Score = 43.5 bits (101), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Query: 152 FKKKKGNCYVCGKPGHFANKC----RYRKGDHKPPKA 184
F GNC+ CGKPGHF NKC ++ DH P+A
Sbjct: 143 FPGSSGNCFKCGKPGHFQNKCPLNATIKEMDHNDPEA 179
>gi|77553503|gb|ABA96299.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 245
Score = 43.1 bits (100), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 8/70 (11%)
Query: 34 RSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQ--------NFKMAEDKEVT 85
R ++S L++ + DVY ++W L K+ + DAG++ ++KM +D+ V
Sbjct: 157 RGALISVLADNIVDVYMHMPSGKDMWDALEAKFGVSDAGSELYVMEQFYDYKMVDDRSVV 216
Query: 86 SQIHGFHMLI 95
Q H ML+
Sbjct: 217 EQAHEIQMLV 226
>gi|27228721|ref|NP_758808.1| polyprotein [Taro bacilliform virus]
gi|25814833|gb|AAN75640.1|AF357836_3 polyprotein [taro bacilliform virus]
Length = 1881
Score = 43.1 bits (100), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 6/55 (10%)
Query: 124 KANIVKNEAHPSKNQKPNKKFFKNKKTTFKKKKGNCYVCGKPGHFANKCRYRKGD 178
KA K + HP+ + + FK K + KK C++CG+PGHFA +C ++G+
Sbjct: 696 KARTYKGKPHPT-----HVRVFKKAKYQ-RTKKCKCFICGEPGHFARECTKQRGN 744
>gi|170058450|ref|XP_001864927.1| predicted protein [Culex quinquefasciatus]
gi|167877559|gb|EDS40942.1| predicted protein [Culex quinquefasciatus]
Length = 479
Score = 43.1 bits (100), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 34/162 (20%), Positives = 69/162 (42%), Gaps = 11/162 (6%)
Query: 17 ENYEVLLQNWIKANKVCRSTI---LSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGA 73
E +L++ ++K C ++ L TL +D S+ + Y++ I+ +
Sbjct: 110 EAMGILIREFLKEGTGCLISMRGRLQTLRERKFDSLSELFYNYDV--------IVRELDR 161
Query: 74 QNFKMAEDKEVTSQIHGFHMLINDLKNENIILPESFMTIDQLEKAKEITSKANIVKNEAH 133
KM+ +++ S + N ++ +LP + + + K + A I E
Sbjct: 162 LGAKMSSAEKIHSLLLAIPGRFNHVRGALTVLPNEELCKKPIAEIKRMFLDAEIAMGEER 221
Query: 134 PSKNQKPNKKFFKNKKTTFKKKKGNCYVCGKPGHFANKCRYR 175
+ +K + KT+ KK + C+ CG+ GH+ N+C R
Sbjct: 222 KNGREKRSGPPNVALKTSSKKAEPKCFGCGEIGHYKNRCPRR 263
>gi|70663916|emb|CAE02930.3| OSJNBa0014K14.2 [Oryza sativa Japonica Group]
Length = 628
Score = 42.7 bits (99), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 28 KANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAG--------AQNFKMA 79
+A + ILS L + L +VY A E+W L K+ DA ++KMA
Sbjct: 56 EATTIFVGCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHHYKMA 115
Query: 80 EDKEVTSQIHGFHMLINDLKNENIILPESFM 110
+++ V Q H + +L+ +LP+ F+
Sbjct: 116 DNRSVVEQAHEIQTMAKELELLKCVLPDKFV 146
>gi|38567949|emb|CAE04777.3| OSJNBb0115I21.5 [Oryza sativa Japonica Group]
Length = 722
Score = 42.7 bits (99), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 65/157 (41%), Gaps = 21/157 (13%)
Query: 28 KANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAG--------AQNFKMA 79
+A + ILS L + L +VY A E+W L K+ DA +++MA
Sbjct: 25 EATTLFVGYILSVLGDRLVEVYMHMTDAKELWDALHTKFGAIDASNDLYIMEQFHDYRMA 84
Query: 80 EDKEVTSQIHGFHMLINDLKNENIILPESFM---------TIDQLEKAKEITSKANIVKN 130
+++ V Q H + L+ +LP+ F+ T ++ + K + +I +N
Sbjct: 85 DNRSVVEQAHETQTMAKKLELLKCVLPDKFVAECICVLKFTSGKIVQLKNVQHVPSINRN 144
Query: 131 EAHPSKNQKPNKK--FFKNKKTTFKKKK--GNCYVCG 163
S+ + K F NK FK + G Y CG
Sbjct: 145 LVRGSRLTRDGFKLVFESNKVVVFKHRNFIGKGYECG 181
>gi|147777359|emb|CAN62884.1| hypothetical protein VITISV_039744 [Vitis vinifera]
Length = 1136
Score = 42.7 bits (99), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 21/78 (26%)
Query: 32 VCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQNFKMAEDKEVTSQIHGF 91
+CR IL+ LS+ LYD+Y+ A EIW L KY E+
Sbjct: 208 ICRGHILNALSDRLYDLYTNTNSAREIWEALENKYKAEE--------------------- 246
Query: 92 HMLINDLKNENIILPESF 109
+++N LK I LPE+F
Sbjct: 247 EVIVNKLKVLKIELPEAF 264
>gi|108711140|gb|ABF98935.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 593
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 8/82 (9%)
Query: 37 ILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAG--------AQNFKMAEDKEVTSQI 88
ILS L + L +VY A E+W L K+ DA ++KMA+++ V Q
Sbjct: 65 ILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMADNRSVVEQA 124
Query: 89 HGFHMLINDLKNENIILPESFM 110
H + +L+ +LP+ F+
Sbjct: 125 HEIQTMAKELELLKCVLPDKFV 146
>gi|28876012|gb|AAO60021.1| putative polyprotein [Oryza sativa Japonica Group]
gi|108711758|gb|ABF99553.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1224
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 28 KANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAG--------AQNFKMA 79
+A + ILS L + L +VY A E+W L K+ DA ++KMA
Sbjct: 56 EATTLFVGCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMA 115
Query: 80 EDKEVTSQIHGFHMLINDLKNENIILPESFM 110
+++ V Q H + +L+ +LP+ F+
Sbjct: 116 DNRSVVEQAHEIQTMAKELELLKCVLPDKFV 146
>gi|308465921|ref|XP_003095217.1| hypothetical protein CRE_22626 [Caenorhabditis remanei]
gi|308245611|gb|EFO89563.1| hypothetical protein CRE_22626 [Caenorhabditis remanei]
Length = 2243
Score = 42.7 bits (99), Expect = 0.11, Method: Composition-based stats.
Identities = 30/126 (23%), Positives = 58/126 (46%), Gaps = 25/126 (19%)
Query: 65 KYIIEDAGAQNFKMAEDKEVTSQIHGFHMLINDLKNENIILPESFMTIDQLEKAKEITSK 124
K+ ++ +NF+ A++ + F +L+ + N I P+ S
Sbjct: 113 KFHVKGESPRNFQEAQNSALK-----FELLLAEAAKANTITPQGL-------------SF 154
Query: 125 ANIVKNEAHPSKNQKPNKKFFKNKKTTFKK--KKGNCYVCGKPGHFANKCRYRKGDH--- 179
A +N PS+ +P + +++++ F ++ CY CG GH+A CR R+G+H
Sbjct: 155 APPPQNT--PSQPAQPPQSAYQHQQPNFPPPPRRTVCYSCGYEGHYAADCRRRQGNHYQN 212
Query: 180 KPPKAN 185
+ P+ N
Sbjct: 213 RDPRNN 218
>gi|440577370|emb|CCI55375.1| PH01B035L11.20 [Phyllostachys edulis]
Length = 456
Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 40/85 (47%), Gaps = 8/85 (9%)
Query: 34 RSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQ--------NFKMAEDKEVT 85
+ ++S L +L D Y K E W L K+ + D G++ +++M + + V
Sbjct: 38 KGAVVSVLGEKLVDAYMVIKTGKEKWDALEAKFGVSDGGSELYLMEQYHDYRMVDSRSVV 97
Query: 86 SQIHGFHMLINDLKNENIILPESFM 110
Q+H + +L+ +LP+ F+
Sbjct: 98 EQVHEIQSMATELEYFKCVLPDKFI 122
>gi|440632482|gb|ELR02401.1| hypothetical protein GMDG_05459 [Geomyces destructans 20631-21]
Length = 300
Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 18/33 (54%)
Query: 140 PNKKFFKNKKTTFKKKKGNCYVCGKPGHFANKC 172
P K KT GNC+ CGKPGHF +KC
Sbjct: 230 PKPTMLKCVKTAVPASSGNCFKCGKPGHFQDKC 262
>gi|8778361|gb|AAF79369.1|AC007887_28 F15O4.39 [Arabidopsis thaliana]
Length = 893
Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 79/190 (41%), Gaps = 38/190 (20%)
Query: 53 KFAYEIWAQLRKKYIIEDAGAQ--------NFKMAEDKEVTSQIHGFHMLINDLKN---- 100
K E WA L + Y+++ Q N+ M + K + + F +I+DL N
Sbjct: 74 KLTAEAWATLDRLYLVKSLPNQVYLQLKVYNYMMQDSKTLEENVDEFLKMISDLSNLQIQ 133
Query: 101 -------ENIILPE--SFMTIDQLEKAKEITSKANIV--------KNEAHPSKNQKPNKK 143
E I L + S ++LE ++I+ + V K +A S N + K
Sbjct: 134 ETPKYGREGIKLDDVISAAKSNELE-LRDISGGSRPVGEGVYVRGKTQARGSGNYQSGKG 192
Query: 144 FFKNKKTTFKKKKGNCYVCGKPGHFANKCRYR-----KGDHKPPKANLVDGEDIIVAVVV 198
K+T KK C++CGK GHF +C Y+ KG + D +V +V
Sbjct: 193 EGNESKSTEGKKV--CWICGKEGHFKRQC-YKWLEKNKGSGAGETLLVKDDAQDLVGLVA 249
Query: 199 TQENMVAAKG 208
++ N+ KG
Sbjct: 250 SEVNLGEHKG 259
>gi|55168311|gb|AAV44177.1| hypothetcial protein [Oryza sativa Japonica Group]
Length = 602
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 16/85 (18%)
Query: 35 STILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQ--------NFKMAEDKEVTS 86
++S L++ + DVY +W L K+ + DAG++ ++KM +D V
Sbjct: 400 GALISVLTDNIVDVYMHMPLGKNMWDALEAKFGLSDAGSELYIMEQFYDYKMVDDHTV-- 457
Query: 87 QIHGFHMLINDLKNENIILPESFMT 111
ML +L+N N LP+ F+
Sbjct: 458 ------MLAKELENNNCELPDKFVA 476
>gi|449442793|ref|XP_004139165.1| PREDICTED: riboflavin biosynthesis protein RibD-like [Cucumis
sativus]
Length = 693
Score = 42.4 bits (98), Expect = 0.14, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 8/76 (10%)
Query: 24 QNWIKANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQN-------- 75
+ + K NK R +L+ +S+ ++D++ K A +I L +Y +D G N
Sbjct: 609 EKYKKNNKTVRGHLLNHMSDPMFDLFVIQKSAKDILCILESRYGGDDTGRMNYVVGKLLQ 668
Query: 76 FKMAEDKEVTSQIHGF 91
F+M +DK V QIH +
Sbjct: 669 FQMIDDKPVMEQIHEY 684
>gi|18542177|gb|AAL75486.1|AF466202_12 putative Fourf gag/pol protein [Zea mays]
Length = 1292
Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 80/225 (35%), Gaps = 77/225 (34%)
Query: 34 RSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQ--------NFKMAEDKEVT 85
R ++S L + Y E+W L K+ + DAG++ ++KM E++ V
Sbjct: 77 RGAVISALDTKFQKSYIILPTGKELWDALVGKFGVTDAGSELYLMEQLYDYKMVENRSVV 136
Query: 86 SQIHGFHMLINDLKNENIILPESFM---------------------------------TI 112
Q H F L +L+ LP+ F+ T+
Sbjct: 137 EQAHEFQALAKELELFPCPLPDKFVAGGIIAKLPPSWKDFATSLKHKRQEFNVEELIGTL 196
Query: 113 DQLEKAKEI-------TSKANIVKNEAHPSKNQKPNKKFFKNKKTTFKKKKGN------- 158
D E+A+ TS AN+V QK N + F KK K++ N
Sbjct: 197 DVEERARTKDSGKGVETSTANVV---------QKRNFRKFNKKKNQNKQENANKPVHTAQ 247
Query: 159 -------------CYVCGKPGHFANKCRYRKGDHKPPKANLVDGE 190
C+VCG H+A +C RK AN+V E
Sbjct: 248 FKKKNNNNKGKGGCFVCGSDQHWARECPDRKFTQDKKSANVVTTE 292
>gi|342319725|gb|EGU11672.1| Hypothetical Protein RTG_02458 [Rhodotorula glutinis ATCC 204091]
Length = 2138
Score = 42.0 bits (97), Expect = 0.15, Method: Composition-based stats.
Identities = 39/141 (27%), Positives = 60/141 (42%), Gaps = 22/141 (15%)
Query: 45 LYDVYSQHKFAYEIWAQLRKKYIIEDAGAQNFKMAEDKEVTSQIHGFHMLINDLKNENII 104
LYD+ + E + R ED A + AE +++ + +G N L N
Sbjct: 231 LYDIGQRRLLTKEEGSGKRINIAKEDLKALDEARAERRDM-AMAYG-----NGLPNVYDY 284
Query: 105 LPESFMTIDQLEKAKEITSKANIVKNEAHPSKNQKPNKKFFKNKKTTFKKKKGN------ 158
LP S + QL ++ T + ++ ++HP + P+ +F +K KK GN
Sbjct: 285 LPTSSTAMPQLIRSTR-TKRPSV---DSHPIAQRTPSARFTPYQKGDGGKKVGNYGEGGS 340
Query: 159 ------CYVCGKPGHFANKCR 173
CY CGK GH A CR
Sbjct: 341 GHSFRVCYGCGKKGHSARTCR 361
>gi|55168272|gb|AAV44138.1| hypothetcial protein [Oryza sativa Japonica Group]
Length = 596
Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 16/82 (19%)
Query: 37 ILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQ--------NFKMAEDKEVTSQI 88
++S L++ + DVY +W L K+ + DAG++ ++KM +D V
Sbjct: 396 LISVLTDNIVDVYMHMPLGKNMWDALEAKFGLSDAGSELYIMEQFYDYKMVDDHTV---- 451
Query: 89 HGFHMLINDLKNENIILPESFM 110
ML +L+N N LP+ F+
Sbjct: 452 ----MLAKELENNNCELPDKFV 469
>gi|268321248|gb|ACZ02411.1| polyprotein [Sugarcane bacilliform virus]
Length = 1837
Score = 42.0 bits (97), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 129 KNEAHPSKNQKPNKKFFKNKKTTFKKKKGNCYVCGKPGHFANKCR 173
K+ ++ K K + + K K +KK CY CG+ GHFA++CR
Sbjct: 712 KSTSYKGKPHKSHVRIGKKKHMALRKKNCRCYACGEEGHFASECR 756
>gi|259120464|ref|YP_003208050.1| putative polyprotein [Pelargonium vein banding virus]
gi|258547408|gb|ACV74337.1| putative polyprotein [Pelargonium vein banding virus]
Length = 1970
Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 124 KANIVKNEAHPSKNQKPNKKFFKNKKTTFKKKKGNCYVCGKPGHFANKCRYRKGDHKPPK 183
K + K++++ K + + KNK + K C++CG+ GHFA +CR +KG+ +
Sbjct: 897 KYGLRKSQSYKGKPHDTHVRVVKNKDKA-RSVKCKCFICGEEGHFARECRSKKGNIA--R 953
Query: 184 ANLVDGEDI 192
A +VD D+
Sbjct: 954 AAVVDNLDL 962
>gi|357167074|ref|XP_003580991.1| PREDICTED: uncharacterized protein LOC100835998 [Brachypodium
distachyon]
Length = 301
Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
Query: 39 STLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQ--------NFKMAEDKEVTSQIHG 90
S L + + D Y ++W L +K+ + DAG + ++KM ED+ + Q H
Sbjct: 114 SILGDNIVDSYLSLNNGKDMWDALERKFGVSDAGTELYVMEQFYDYKMVEDRPIVEQAHE 173
Query: 91 FHMLINDLKNENIILPESFMT 111
L +L++ +LP F+
Sbjct: 174 IQSLAKELEHFTCVLPNKFVA 194
>gi|440632161|gb|ELR02080.1| hypothetical protein GMDG_05241 [Geomyces destructans 20631-21]
Length = 358
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 140 PNKKFFKNKKTTFKKKKGNCYVCGKPGHFANKC 172
P + KT GNC+ CGKPGHF +KC
Sbjct: 289 PKPTMPERVKTAVPASSGNCFKCGKPGHFQDKC 321
>gi|268321244|gb|ACZ02408.1| polyprotein [Sugarcane bacilliform virus]
Length = 1786
Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 129 KNEAHPSKNQKPNKKFFKNKKTTFKKKKGNCYVCGKPGHFANKCR 173
K+ ++ K K + + K K +KK CY CG+ GHFA++CR
Sbjct: 713 KSTSYKGKPHKSHVRIGKKKHLALRKKNCRCYACGEEGHFASECR 757
>gi|348675664|gb|EGZ15482.1| hypothetical protein PHYSODRAFT_507562 [Phytophthora sojae]
Length = 476
Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 71/179 (39%), Gaps = 37/179 (20%)
Query: 30 NKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQNFKMAE--------- 80
++V R+TIL +QH+F+Y + L ++ + ++ + MA+
Sbjct: 79 DRVARATILRADK-------TQHEFSYAV---LLRRQLYQNTHTEGQSMADYLVGMTRLR 128
Query: 81 -------------DKEVTSQIHGFHMLINDLKNENIILPESFMTIDQLEKAKEITSKANI 127
D+E+ + L + E LP D++E+
Sbjct: 129 QQLQSMSSEHAISDEEMARLLLMGVSLTHRELVEQFDLPTRQDERDRMEQQVAARHNGGA 188
Query: 128 VKNEAHPSKNQKPNKKFFKNKKTTFKKKKGNCYVCGKPGHFANKCRYRKGDHKPPKANL 186
V N ++ Q+ F +T+ KK+K C+ CGKPGHF C +RK K + L
Sbjct: 189 VMNMLGQTRQQQVQ---FNGWRTSTKKRK--CFHCGKPGHFKGDCWHRKTSSKKAQPGL 242
>gi|400592505|gb|EJP60697.1| gag protein [Beauveria bassiana ARSEF 2860]
Length = 576
Score = 41.6 bits (96), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 36/88 (40%), Gaps = 13/88 (14%)
Query: 107 ESFMTIDQLEKAKEITSKANIVKNEAHPSKNQKPNKKFFKNKKTTF-------------K 153
E + ID A+ + ++P + + N +N T + K
Sbjct: 209 ERIIKIDNRLYARRLERGGRGTSYRSNPPRRNQANTGKRRNGSTAYGTHPGPMELDATGK 268
Query: 154 KKKGNCYVCGKPGHFANKCRYRKGDHKP 181
+K CY CGK GHFANKCR K KP
Sbjct: 269 EKGKKCYNCGKAGHFANKCRAPKKQWKP 296
>gi|403420067|emb|CCM06767.1| predicted protein [Fibroporia radiculosa]
Length = 285
Score = 41.6 bits (96), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 9/82 (10%)
Query: 110 MTIDQLEKAKEI-TSKANIVKNEAHPSKNQKPNKKFFKNKKTTFKKKKGNCYVCGKPGHF 168
M +D K K+ T + ++ P K Q+ N + + KKG CY+CGKPGH+
Sbjct: 108 MEVDNTSKQKQSGTRQTQQQRSTPDPRKRQEGNALSMQEVQ-----KKGVCYICGKPGHW 162
Query: 169 ANKCRYRK-GDH--KPPKANLV 187
C +K GD KP AN+
Sbjct: 163 GRTCPNKKTGDSAVKPAAANMT 184
>gi|332308946|ref|YP_004442833.1| polyprotein [Banana streak UM virus]
gi|331029463|gb|AEC49884.1| polyprotein [Banana streak UM virus]
Length = 1848
Score = 41.6 bits (96), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 7/71 (9%)
Query: 122 TSKANIVKNEAHPSKNQKPNKKFFKNKKTTFKKKKGNCYVCGKPGHFANKCRYRKGDHKP 181
T + K + H S + +K+ + +K K+ CYVCG+ GHFA +C+ +K +
Sbjct: 712 TRRTRTYKGKPHSSHARIDKRKYLQGRK-----KECRCYVCGEEGHFAKECKSKKKIQE- 765
Query: 182 PKANLVDGEDI 192
+ N+V+ DI
Sbjct: 766 -RVNIVNELDI 775
>gi|441620027|ref|XP_003280837.2| PREDICTED: uncharacterized protein LOC100581688 [Nomascus
leucogenys]
Length = 1165
Score = 41.6 bits (96), Expect = 0.22, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 146 KNKKTTFKKKKGNCYVCGKPGHFANKCRYRKGDH-KPPKA 184
+NK+ K C+ CGKPGHF N+CR+ K PKA
Sbjct: 576 QNKRLQNKGGNQTCFNCGKPGHFKNQCRHTPASSGKSPKA 615
>gi|10176701|dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsis thaliana]
Length = 1342
Score = 41.2 bits (95), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 71/176 (40%), Gaps = 46/176 (26%)
Query: 75 NFKMAEDKEVTSQIHGFHMLINDLKNENIILPESFMTI----------DQLEKA------ 118
+KM+E+ + ++ F LI+DL+N +++P+ I DQL++
Sbjct: 129 GYKMSENMTMEENVNDFFKLISDLENVKVVVPDEDQAIVLLMSLPRQFDQLKETLKYCKT 188
Query: 119 ----KEITS-----------KANIVKNEA----------HPSKNQKPNKKFFKNKKTTFK 153
+EITS ++KN + ++ + PN KNK +
Sbjct: 189 TLHLEEITSAIRSKILELGASGKLLKNNSDGLFVQDRGRSETRGKGPN----KNKSRSKS 244
Query: 154 KKKG-NCYVCGKPGHFANKCRYRKGDHKPPKANLVDGEDIIVAVVVTQENMVAAKG 208
K G C++CGK GHF +C K +K + + A V +V ++
Sbjct: 245 KGAGKTCWICGKEGHFKKQCYVWKERNKQGSTSERGEASTVTARVTDAAALVVSRA 300
>gi|440635581|gb|ELR05500.1| hypothetical protein GMDG_07422 [Geomyces destructans 20631-21]
Length = 300
Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 140 PNKKFFKNKKTTFKKKKGNCYVCGKPGHFANKC 172
P + +T GNC+ CGKPGHF +KC
Sbjct: 230 PKPAILERVRTAVPAPSGNCFKCGKPGHFQDKC 262
>gi|32487835|emb|CAE05066.1| OSJNBa0094P09.5 [Oryza sativa Japonica Group]
gi|32492383|emb|CAE05129.1| OSJNBa0079F16.21 [Oryza sativa Japonica Group]
Length = 849
Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 61/157 (38%), Gaps = 59/157 (37%)
Query: 78 MAEDKEVTSQIHGFHMLINDLKNENIILPESFM--------------------------- 110
MA+++ V Q H + +L+ +LP+ F+
Sbjct: 1 MADNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYS 60
Query: 111 ------TIDQLEKAKE---------ITSKANIVKNEAHPSKNQKPNKKFFKNKKTTFK-- 153
++D E+A+E S AN+V H ++N+ K +K ++TT
Sbjct: 61 VEGLIASLDVEEEAREKDAASKGHGGQSSANVV----HKAQNKSKGK--YKAQQTTNFKK 114
Query: 154 ---------KKKGNCYVCGKPGHFANKCRYRKGDHKP 181
+ + C+VCG+PGH A KC RKG P
Sbjct: 115 QKKNNNNPNQDERTCFVCGQPGHLARKCPQRKGMKAP 151
>gi|440638598|gb|ELR08517.1| hypothetical protein GMDG_03216 [Geomyces destructans 20631-21]
Length = 131
Score = 40.8 bits (94), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 140 PNKKFFKNKKTTFKKKKGNCYVCGKPGHFANKC 172
P + KT GNC+ CGKPGHF +KC
Sbjct: 57 PKPTMLERVKTAVPASSGNCFKCGKPGHFQDKC 89
>gi|440638082|gb|ELR08001.1| hypothetical protein GMDG_08586 [Geomyces destructans 20631-21]
Length = 309
Score = 40.8 bits (94), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 149 KTTFKKKKGNCYVCGKPGHFANKC 172
+T GNC+ CGKPGHF +KC
Sbjct: 248 RTAVPAPSGNCFKCGKPGHFQDKC 271
>gi|440638988|gb|ELR08907.1| hypothetical protein GMDG_08668 [Geomyces destructans 20631-21]
Length = 355
Score = 40.8 bits (94), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 149 KTTFKKKKGNCYVCGKPGHFANKC 172
+T GNC+ CGKPGHF +KC
Sbjct: 294 RTAVPAPSGNCFKCGKPGHFQDKC 317
>gi|357486073|ref|XP_003613324.1| Cc-nbs-lrr resistance protein [Medicago truncatula]
gi|355514659|gb|AES96282.1| Cc-nbs-lrr resistance protein [Medicago truncatula]
Length = 1104
Score = 40.8 bits (94), Expect = 0.37, Method: Composition-based stats.
Identities = 37/177 (20%), Positives = 74/177 (41%), Gaps = 38/177 (21%)
Query: 34 RSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQ--------NFKMAEDKEVT 85
RS ++ L +++ ++ A IWA+L Y+ + + +F+M E K +
Sbjct: 59 RSAVVLCLGDKVLREVAKEATAASIWAKLESLYMTKSLAHRQFLKQQLYSFRMVESKAIM 118
Query: 86 SQIHGFHMLINDLKNENI-------------ILPESF--------------MTIDQLEKA 118
Q+ F+ +++DL+N + LP+SF +T+++++ A
Sbjct: 119 EQLTEFNKILDDLENIEVQLEDEDKAILLLCALPKSFESFKDTMLYGKEGTVTLEEVQAA 178
Query: 119 ---KEITSKANIVKNEAHPSKNQKPNKKFFKNKKTTFKKKKGNCYVCGKPGHFANKC 172
KE+T ++ + N N++ + K + C+ C K GHF C
Sbjct: 179 LRTKELTKSKDLTHEYGDGLSVTRGNGGGRGNRRKSGNKSRFECFNCHKMGHFKKDC 235
>gi|62733619|gb|AAX95736.1| Reverse transcriptase (RNA-dependent DNA polymerase), putative
[Oryza sativa Japonica Group]
gi|110288782|gb|AAP52615.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 892
Score = 40.8 bits (94), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 8/62 (12%)
Query: 57 EIWAQLRKKYIIEDAGAQ--------NFKMAEDKEVTSQIHGFHMLINDLKNENIILPES 108
++W L K+ + DA ++ ++KM +D+ V Q H ML +L+N N LP+
Sbjct: 6 DMWDALEAKFGVSDASSELYVMEKFYDYKMVDDRSVVEQAHEIQMLAKELENNNCELPDK 65
Query: 109 FM 110
F+
Sbjct: 66 FV 67
>gi|113120256|gb|ABI30268.1| polyprotein [Banana streak virus]
Length = 1709
Score = 40.8 bits (94), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 129 KNEAHPSKNQKPNKKFFKNKKTTFKKKKGNCYVCGKPGHFANKCRYRKGDHKPPKA---- 184
K+ ++ K K + + K K + +KK CY CG+ GHFA++C+ + K
Sbjct: 709 KSTSYKGKPHKSHVRIGKKKYLSLRKKNCRCYACGEEGHFASECKNPRKIMDRVKVLDSL 768
Query: 185 NLVDGEDII 193
+L DG D+I
Sbjct: 769 DLEDGLDVI 777
>gi|91214364|gb|ABE27943.1| ORFIII [Banana streak virus]
Length = 1709
Score = 40.8 bits (94), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 129 KNEAHPSKNQKPNKKFFKNKKTTFKKKKGNCYVCGKPGHFANKCRYRKGDHKPPKA---- 184
K+ ++ K K + + K K + +KK CY CG+ GHFA++C+ + K
Sbjct: 709 KSTSYKGKPHKSHVRIGKKKYLSLRKKNCRCYACGEEGHFASECKNPRKIMDRVKVLDSL 768
Query: 185 NLVDGEDII 193
+L DG D+I
Sbjct: 769 DLEDGLDVI 777
>gi|18450261|ref|NP_569150.1| polyprotein, cleavage products include viral coat protein and
proteins with homology to an aspartic protease, reverse
transcriptase and RNase H [Banana streak OL virus]
gi|3183637|emb|CAA05264.1| polyprotein, cleavage products include viral coat protein and
proteins with homology to an aspartic protease, reverse
transcriptase and RNase H [Banana streak OL virus]
Length = 1832
Score = 40.8 bits (94), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 129 KNEAHPSKNQKPNKKFFKNKKTTFKKKKGNCYVCGKPGHFANKCRYRKGDHKPPKA---- 184
K+ ++ K K + + K K + +KK CY CG+ GHFA++C+ + K
Sbjct: 709 KSTSYKGKPHKSHVRIGKKKYLSLRKKNCRCYACGEEGHFASECKNPRKIMDRVKVLDSL 768
Query: 185 NLVDGEDII 193
+L DG D+I
Sbjct: 769 DLEDGLDVI 777
>gi|119191217|ref|XP_001246215.1| hypothetical protein CIMG_05656 [Coccidioides immitis RS]
Length = 817
Score = 40.8 bits (94), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 124 KANIVKNEAHPSKNQKPNKKFFKNKKTTFKKKKGNCYVCGKPGHFANKCRYRK 176
K+N + P K+ K F ++K++ + NCY+CGKPGH A C+ K
Sbjct: 142 KSNTNATSSDPQKSYKNTNSKFNSEKSSLQN--WNCYICGKPGHLAKFCKSNK 192
>gi|384403233|gb|AFH88826.1| ORFIII [Banana streak virus]
Length = 1709
Score = 40.8 bits (94), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 129 KNEAHPSKNQKPNKKFFKNKKTTFKKKKGNCYVCGKPGHFANKCRYRKGDHKPPKA---- 184
K+ ++ K K + + K K + +KK CY CG+ GHFA++C+ + K
Sbjct: 709 KSTSYKGKPHKSHVRIGKKKYLSLRKKNCRCYACGEEGHFASECKNPRKIMDRVKVLDSL 768
Query: 185 NLVDGEDII 193
+L DG D+I
Sbjct: 769 DLEDGLDVI 777
>gi|440640181|gb|ELR10100.1| hypothetical protein GMDG_04500 [Geomyces destructans 20631-21]
Length = 410
Score = 40.4 bits (93), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 149 KTTFKKKKGNCYVCGKPGHFANKC 172
+T GNC+ CGKPGHF +KC
Sbjct: 349 RTAVPAAPGNCFKCGKPGHFQDKC 372
>gi|384403237|gb|AFH88829.1| ORFIII [Banana streak virus]
Length = 1709
Score = 40.4 bits (93), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 27/45 (60%)
Query: 129 KNEAHPSKNQKPNKKFFKNKKTTFKKKKGNCYVCGKPGHFANKCR 173
K+ ++ K K + + K K + +KK CY CG+ GHFA++C+
Sbjct: 709 KSTSYKGKPHKSHVRIGKKKYLSLRKKNCRCYACGEEGHFASECK 753
>gi|155676190|gb|ABU25358.1| gag protein [Small ruminant lentivirus]
Length = 435
Score = 40.4 bits (93), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 158 NCYVCGKPGHFANKCRYRKGDHKPPKANLVDGEDII 193
C+ CGK GH CR RKG P+ N+ G+ ++
Sbjct: 399 TCHFCGKKGHVQEDCRQRKGKQGGPQGNIKRGQRVL 434
>gi|147864469|emb|CAN82637.1| hypothetical protein VITISV_028818 [Vitis vinifera]
Length = 1114
Score = 40.4 bits (93), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%)
Query: 32 VCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIED 70
+CR IL+ LS+ LYD+Y+ A EIW L KY E+
Sbjct: 75 ICRGHILNALSDRLYDLYTNTNSAREIWEALENKYKAEE 113
>gi|440633104|gb|ELR03023.1| hypothetical protein GMDG_05874 [Geomyces destructans 20631-21]
Length = 283
Score = 40.4 bits (93), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 16/23 (69%)
Query: 150 TTFKKKKGNCYVCGKPGHFANKC 172
TT GNC+ CGKPGHF +KC
Sbjct: 241 TTVPAPSGNCFNCGKPGHFQDKC 263
>gi|322707640|gb|EFY99218.1| gag polyprotein [Metarhizium anisopliae ARSEF 23]
Length = 1046
Score = 40.4 bits (93), Expect = 0.52, Method: Composition-based stats.
Identities = 15/23 (65%), Positives = 18/23 (78%)
Query: 159 CYVCGKPGHFANKCRYRKGDHKP 181
CY CGKPGHFANKC+ + + KP
Sbjct: 877 CYNCGKPGHFANKCKKPRKEWKP 899
>gi|140068417|gb|ABE87633.2| Putative polyprotein, related [Medicago truncatula]
Length = 121
Score = 40.4 bits (93), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 31/53 (58%)
Query: 24 QNWIKANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQNF 76
Q W + +C IL+ +S+ L+D+Y A ++W +L +Y+ EDA ++ +
Sbjct: 63 QKWDNDDYICLRHILNGMSDSLFDIYQSSPSAKDLWDKLETRYMREDATSKKW 115
>gi|451852459|gb|EMD65754.1| hypothetical protein COCSADRAFT_159375 [Cochliobolus sativus
ND90Pr]
Length = 121
Score = 40.0 bits (92), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 13/16 (81%), Positives = 14/16 (87%)
Query: 157 GNCYVCGKPGHFANKC 172
GNCY CGKPGHFA+ C
Sbjct: 95 GNCYYCGKPGHFASDC 110
>gi|308809325|ref|XP_003081972.1| putative DAK2 domain containing protein (ISS) [Ostreococcus tauri]
gi|116060439|emb|CAL55775.1| putative DAK2 domain containing protein (ISS), partial
[Ostreococcus tauri]
Length = 843
Score = 40.0 bits (92), Expect = 0.57, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 155 KKGNCYVCGKPGHFANKCRYRK-GDHKPPKANLVDGEDI 192
+ G C +CG+ GHFA +CR R G + P+ L ED+
Sbjct: 85 RDGACRICGRMGHFARECRDRAGGGYDAPRRRLAGAEDV 123
>gi|397615164|gb|EJK63262.1| hypothetical protein THAOC_16092, partial [Thalassiosira oceanica]
Length = 429
Score = 40.0 bits (92), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 49/120 (40%), Gaps = 10/120 (8%)
Query: 78 MAEDKEVTSQIHGFHMLINDLKNENIILPE-------SFMTIDQLEKAKEITSKANIVKN 130
+ ED EV I +ND N + + + F + Q + + + SK
Sbjct: 192 LTEDYEVA--ISALETRMNDPANTTVTITDVRDSLNTRFSRMKQQQSRETLESKYEKALT 249
Query: 131 EAHPSKNQKPNKKFFKNKKTTFKKKKGNCYVCGKPGHFANKCRYRKGDHKPPKANLVDGE 190
S+ +KP + +N +G CY CG+ GH+A C+ R + + A L GE
Sbjct: 250 ALEESR-RKPYNRNDRNDTKGASGDRGKCYKCGERGHYAKDCKQRPNETQHELARLAIGE 308
>gi|322697605|gb|EFY89383.1| gag protein [Metarhizium acridum CQMa 102]
Length = 541
Score = 40.0 bits (92), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 19/29 (65%)
Query: 153 KKKKGNCYVCGKPGHFANKCRYRKGDHKP 181
K+K CY CGK GHFANKCR K KP
Sbjct: 288 KEKGKTCYNCGKTGHFANKCRAPKKPWKP 316
>gi|357510577|ref|XP_003625577.1| Ubiquitin-protein ligase [Medicago truncatula]
gi|355500592|gb|AES81795.1| Ubiquitin-protein ligase [Medicago truncatula]
Length = 1405
Score = 40.0 bits (92), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 37/177 (20%), Positives = 74/177 (41%), Gaps = 38/177 (21%)
Query: 34 RSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQ--------NFKMAEDKEVT 85
RS ++ L +++ ++ A IWA+L Y+ + + +F+M E K +
Sbjct: 59 RSAVVLCLGDKVLREVAKEATAASIWAKLESLYMTKSLAHRQFLKQQLYSFRMVESKAIM 118
Query: 86 SQIHGFHMLINDLKNENI-------------ILPESF--------------MTIDQLEKA 118
Q+ F+ +++DL+N + LP+SF +T+++++ A
Sbjct: 119 EQLTEFNKILDDLENIEVQLEDEDKAILLLCALPKSFESFKDTMLYGKEGTVTLEEVQAA 178
Query: 119 ---KEITSKANIVKNEAHPSKNQKPNKKFFKNKKTTFKKKKGNCYVCGKPGHFANKC 172
KE+T ++ + N N++ + K + C+ C K GHF C
Sbjct: 179 LRTKELTKSKDLTHEHGEGLSVTRGNGGGRGNRRKSGNKSRFECFNCHKMGHFKKDC 235
>gi|77556338|gb|ABA99134.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1083
Score = 40.0 bits (92), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 90/210 (42%), Gaps = 63/210 (30%)
Query: 34 RSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQNFKMAEDKEVTSQIHGFHM 93
R ++S L++ + DVY ++W L K+ + DAG++ + V ++ + M
Sbjct: 32 RGALISVLADNIVDVYMHMPSGKDMWDALEAKFGVSDAGSELY-------VMEMLYDYKM 84
Query: 94 LI-NDLKNEN-----------II--LPESFM--------------------TIDQLEKAK 119
++ L+N N II LP S++ ++ EKA+
Sbjct: 85 MLAKKLENNNCELPDKFVAGGIIAKLPPSWLDFATSLKHKRQEFSVTDLIGSLGVEEKAR 144
Query: 120 ---------EITSKANIVKNE----AHPSKNQKPNKKFFKNKKTT------FKKKKGNCY 160
E S N+V+ + +H + N K K K K TT K KG+C+
Sbjct: 145 AKDNRGKNIEGGSSTNLVQQKNPHASHNNNNNKKVKPDVKPKATTNFKKKGKGKAKGDCF 204
Query: 161 VCGKPGHFANKCRYRKGDHKPPKANLVDGE 190
VCGKPGH+A C RK D K AN+V E
Sbjct: 205 VCGKPGHWAKNCPDRK-DKK--SANMVISE 231
>gi|303320891|ref|XP_003070440.1| copia-like retrotransposon family protein [Coccidioides posadasii
C735 delta SOWgp]
gi|240110136|gb|EER28295.1| copia-like retrotransposon family protein [Coccidioides posadasii
C735 delta SOWgp]
Length = 1538
Score = 40.0 bits (92), Expect = 0.61, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 104 ILPESFMTIDQLEKAKEITSKANIVKNEAHPSKNQKPNKKFFKNKKTTFKKKKGNCYVCG 163
+L + I + ++ K ++K N + P K+ K +K++ + NCY+CG
Sbjct: 337 LLKDILHRIPKKDQKKGGSTKPNTNATSSDPQKSYKNTNSESNPEKSSLQN--WNCYICG 394
Query: 164 KPGHFANKCRYRKGDHKP 181
KPGH A C+ K + KP
Sbjct: 395 KPGHLAKFCKSNK-NSKP 411
>gi|4567266|gb|AAD23679.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 838
Score = 40.0 bits (92), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 77/186 (41%), Gaps = 47/186 (25%)
Query: 34 RSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQ--------NFKMAEDKEVT 85
RST++ +L N + + K A + L K ++ + + +KM++ +
Sbjct: 72 RSTVILSLGNHVLRKVIKEKTAAGMIRVLDKLFMAKSLPNRIYLKQRLYGYKMSDSMTIE 131
Query: 86 SQIHGFHMLINDLKNENIILPESFMTI----------DQLE------------------- 116
++ F LI+DL+N + +P+ I DQL+
Sbjct: 132 ENVNDFFKLISDLENVKVSVPDEDQAIVLLMSLPKQFDQLKDTLKYGKTTLALDEITGAI 191
Query: 117 --KAKEITSKANIVKNEAHP------SKNQKPNKKFFKNKKTTFKK--KKGNCYVCGKPG 166
K E+ + ++KN + +++K +K +NK + K +K C+VCGK G
Sbjct: 192 RSKVLELGASGKMLKNSSDALFVQDRGRSEKRDKSSERNKSQSRSKSREKKVCWVCGKEG 251
Query: 167 HFANKC 172
HF +C
Sbjct: 252 HFKKQC 257
>gi|440640718|gb|ELR10637.1| hypothetical protein GMDG_04904 [Geomyces destructans 20631-21]
Length = 379
Score = 40.0 bits (92), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 149 KTTFKKKKGNCYVCGKPGHFANKC 172
+T GNC+ CGKPGHF +KC
Sbjct: 318 RTAVPVPSGNCFKCGKPGHFQDKC 341
>gi|224111436|ref|XP_002332930.1| predicted protein [Populus trichocarpa]
gi|222834159|gb|EEE72636.1| predicted protein [Populus trichocarpa]
Length = 145
Score = 40.0 bits (92), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 21/129 (16%)
Query: 67 IIEDAGAQNFKMAEDKEVTSQIHGF-----HMLINDLKNENIILPESFMTIDQLEK---- 117
II + +M ++++V + I HM +N N+NI + +LE+
Sbjct: 4 IISELKGVGREMTDEQQVQAVIRSLPSNWKHMYVNLTHNDNIKTFDDVARHVELEEDRLY 63
Query: 118 AKEITSKANIVKNEAHPSKNQKPNKKFFKNKKTTFKKKKG----------NCYVCGKPGH 167
AK+ ++A I + + + + K K K + K+K G NC+ CGKPGH
Sbjct: 64 AKKPINEAFIFETKMRGTYDSKYKKGGIKASSSGHKRKHGKHNGKKDKNINCFNCGKPGH 123
Query: 168 FANKCRYRK 176
FA C Y K
Sbjct: 124 FA--CDYTK 130
>gi|440634916|gb|ELR04835.1| hypothetical protein GMDG_07060 [Geomyces destructans 20631-21]
Length = 128
Score = 40.0 bits (92), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 149 KTTFKKKKGNCYVCGKPGHFANKC 172
+T GNC+ CGKPGHF +KC
Sbjct: 67 RTAVPAPSGNCFKCGKPGHFQDKC 90
>gi|189242145|ref|XP_001813277.1| PREDICTED: similar to polyprotein [Tribolium castaneum]
Length = 1492
Score = 40.0 bits (92), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 55/106 (51%), Gaps = 9/106 (8%)
Query: 73 AQNFKMAEDKEVTSQ-IHGFHMLINDLKNE----NIILPESFMTIDQLEKAKEITSKANI 127
A+ F M D E++ + I I+++K + NI +F+T++ ++ ++AN
Sbjct: 262 AETFLMFSDPEMSKRDIKNLVFKISEVKKKSLINNISADSAFVTMN--DRTHRQQTEANR 319
Query: 128 VKNEAHPSKNQKPNKKFFKNKKTTFKKKKGNCYVCGKPGHFANKCR 173
+ ++ + ++ F N +T K + C+ CGKPGH+A+ CR
Sbjct: 320 SRTSHEENRKWENRRQQFPNTRT--KDGRPICFSCGKPGHYASVCR 363
Score = 39.3 bits (90), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 26/45 (57%), Gaps = 5/45 (11%)
Query: 132 AHPSKNQKPNKKFFKNKKTTFKKKKGNCYVCGKPGHFANKCRYRK 176
A +NQ+ K F +N KK C+VCGKPGHFA CR RK
Sbjct: 359 ASVCRNQE-RKNFERNPAPQTKK----CFVCGKPGHFAAVCRNRK 398
>gi|4539406|emb|CAB40039.1| putative retrotransposon [Arabidopsis thaliana]
gi|7267743|emb|CAB78169.1| putative retrotransposon [Arabidopsis thaliana]
Length = 1230
Score = 40.0 bits (92), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 74/189 (39%), Gaps = 50/189 (26%)
Query: 34 RSTILSTLSNELYDVYSQHKFAYEIWAQLRKKY--------IIEDAGAQNFKMAEDKEVT 85
RSTI+ ++S+++ + K A + L K Y I ++KM E+ V
Sbjct: 73 RSTIVLSVSDQVLRKSKKEKTAPSMLEALDKLYMSKALPNRIYLKQKLYSYKMQENLSVE 132
Query: 86 SQIHGFHMLINDLKNENII-------------LPESF---------------MTIDQL-- 115
I F LI DL+N N++ LP+ F +++D++
Sbjct: 133 GNIDEFLRLIADLENTNVLVSDEDQAILLLMSLPKQFDQLKDTLKYGSGRTTLSVDEVVA 192
Query: 116 ---EKAKEITSKANIVKNEAH-------PSKNQKPNKKFFKNKKTTFKKKKG--NCYVCG 163
K E+ S ++ +A P +K NK + + KG C++CG
Sbjct: 193 AIYSKELELGSNKKSIRGQAEGLYVKDKPETRGMSEQKEKGNKGRSRSRSKGWKGCWICG 252
Query: 164 KPGHFANKC 172
+ GHF C
Sbjct: 253 EEGHFKTSC 261
>gi|62734698|gb|AAX96807.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group]
gi|77550001|gb|ABA92798.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1234
Score = 40.0 bits (92), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 28 KANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAG--------AQNFKMA 79
+A + ILS L + L +VY A E+W L K+ +A ++KMA
Sbjct: 135 EATTLFVGCILSMLGDRLVEVYMHMTDAKELWDALNTKFDATNASNDLYIMEQFHDYKMA 194
Query: 80 EDKEVTSQIHGFHMLINDLKNENIILPESFM 110
+++ V Q H + +L+ +LP+ F+
Sbjct: 195 DNRSVVEQAHEIQTMAKELELLKCVLPDKFV 225
>gi|262392380|ref|YP_003284237.1| unnamed protein product [Sugarcane bacilliform virus]
gi|240114281|gb|ACS44708.1| ORF3 protein [Sugarcane bacilliform virus]
Length = 1792
Score = 40.0 bits (92), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 17/60 (28%)
Query: 134 PSKNQKPNKKFFKNKKTTFKKK-----------------KGNCYVCGKPGHFANKCRYRK 176
P +KP K+ + K TT+K K K CY CG+ GH+A++CR +K
Sbjct: 693 PGYYKKPGYKYGRRKTTTYKGKPHKTHVRIDKRKHLKNRKCKCYACGEEGHYASECRNKK 752
>gi|392923219|ref|NP_507948.3| Protein DCT-10 [Caenorhabditis elegans]
gi|345107459|emb|CAA20985.3| Protein DCT-10 [Caenorhabditis elegans]
Length = 695
Score = 40.0 bits (92), Expect = 0.70, Method: Composition-based stats.
Identities = 15/22 (68%), Positives = 17/22 (77%)
Query: 157 GNCYVCGKPGHFANKCRYRKGD 178
GNCY CGK GH AN+CR +K D
Sbjct: 365 GNCYYCGKRGHTANECRRKKSD 386
>gi|308468618|ref|XP_003096551.1| hypothetical protein CRE_09733 [Caenorhabditis remanei]
gi|308243001|gb|EFO86953.1| hypothetical protein CRE_09733 [Caenorhabditis remanei]
Length = 2404
Score = 39.7 bits (91), Expect = 0.76, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 134 PSKNQKPNKKFFKNKKTTFKK--KKGNCYVCGKPGHFANKCRYRKGDH 179
PS+ P + +++++ F ++ CY CG GH+A CR R+G+H
Sbjct: 393 PSQPAHPPQPAYQHQQLNFPTPPRRTVCYSCGYEGHYAADCRRRQGNH 440
>gi|270017176|gb|EFA13622.1| hypothetical protein TcasGA2_TC005267 [Tribolium castaneum]
Length = 453
Score = 39.7 bits (91), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 56/106 (52%), Gaps = 9/106 (8%)
Query: 73 AQNFKMAEDKEVTSQ-IHGFHMLINDLKNE----NIILPESFMTIDQLEKAKEITSKANI 127
A+ F M D E++ + I I+++K + NI +F+T++ ++A ++AN
Sbjct: 215 AEIFLMFSDPEMSKRDIKNLVFKISEVKKKSLINNISADSAFVTMN--DRAHRQQTEANR 272
Query: 128 VKNEAHPSKNQKPNKKFFKNKKTTFKKKKGNCYVCGKPGHFANKCR 173
+ ++ + ++ F N +T K + C+ CGKPGH+A+ CR
Sbjct: 273 SRTSHEENRKWENRRQQFPNTRT--KDGRPICFSCGKPGHYASVCR 316
Score = 39.7 bits (91), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 14/18 (77%), Positives = 15/18 (83%)
Query: 159 CYVCGKPGHFANKCRYRK 176
C+VCGKPGHFA CR RK
Sbjct: 334 CFVCGKPGHFAAVCRNRK 351
>gi|108862423|gb|ABA96959.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 920
Score = 39.7 bits (91), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 65/162 (40%), Gaps = 52/162 (32%)
Query: 78 MAEDKEVTSQIHGFHMLINDLKNENIILPESF---------------------------- 109
M +D+ V Q H ML +L+N N LP+ F
Sbjct: 1 MVDDRSVVEQAHEIQMLAKELENNNCELPDKFVAGGIIAKLPPSWLDFATSLKHKRQEFS 60
Query: 110 -------MTIDQLEKAKEITSK-------ANIV-KNEAHPSKNQKPNKKFFKNKKTT--- 151
+ +++ +AK++ K AN+V K H S N K K K K T
Sbjct: 61 VSDLIGSLGVEEKARAKDVRGKRVEGGSSANMVQKKNPHASHNNKKVKPDVKPKAATNFK 120
Query: 152 ---FKKKKGNCYVCGKPGHFANKCRYRKGDHKPPKANLVDGE 190
K KG+C+VCGK GH+A C RK D K AN+V E
Sbjct: 121 KKGKGKAKGDCFVCGKSGHWAKDCPERK-DRK--SANMVISE 159
>gi|440637956|gb|ELR07875.1| hypothetical protein GMDG_02757 [Geomyces destructans 20631-21]
Length = 150
Score = 39.7 bits (91), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 149 KTTFKKKKGNCYVCGKPGHFANKC 172
+T GNC+ CGKPGHF +KC
Sbjct: 89 RTAVPAPSGNCFKCGKPGHFQDKC 112
>gi|440922552|gb|AGC25937.1| hypothetical protein, partial [Piper DNA virus 1]
Length = 2027
Score = 39.7 bits (91), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 119 KEITSKANIVKNEAHPSKNQKPNKKFFKNKKTTFKKKKGNCYVCGKPGHFANKCRYRKGD 178
K T K + K+ K Q N K+ K T KK C++CG H AN C R +
Sbjct: 456 KSFTRKRKLRKSTTFTRKKQGYNNKYVKKAST----KKCQCFICGDENHLANACPKRNSN 511
Query: 179 HKPPKANLVDGEDIIVAVVVTQENMVAA 206
+ +A L++ D V + +++N V +
Sbjct: 512 KE--RAALIENLDEEVVSIDSEDNSVYS 537
>gi|65372050|ref|YP_233107.1| polyprotein [Banana streak GF virus]
gi|40457271|gb|AAR86692.1| polyprotein III [Banana streak GF virus]
Length = 1832
Score = 39.7 bits (91), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%)
Query: 124 KANIVKNEAHPSKNQKPNKKFFKNKKTTFKKKKGNCYVCGKPGHFANKC 172
K + KN ++ K K + + K K +KK C+ CG+ GH+A++C
Sbjct: 715 KYGVRKNTSYKGKPHKSHIRIGKQKHLNLRKKDCKCFACGETGHYASEC 763
>gi|308450592|ref|XP_003088354.1| hypothetical protein CRE_15146 [Caenorhabditis remanei]
gi|308247917|gb|EFO91869.1| hypothetical protein CRE_15146 [Caenorhabditis remanei]
Length = 292
Score = 39.7 bits (91), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Query: 139 KPNKKFFKNKKTTFKKKKGNCYVCGKPGHFANKCRYR------KGDHKPPKANLVD-GED 191
KP+K + K + K+KG C+ C + GHFA +C + K D +P ++D GED
Sbjct: 150 KPSKLTKRPKLQSTPKRKGTCHYCKEEGHFARECHKKAKLVASKKDQRPNPPTILDRGED 209
Query: 192 I 192
I
Sbjct: 210 I 210
>gi|332308954|ref|YP_004442839.1| polyprotein [Banana streak IM virus]
gi|331029471|gb|AEC49890.1| polyprotein [Banana streak IM virus]
Length = 1870
Score = 39.7 bits (91), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%)
Query: 117 KAKEITSKANIVKNEAHPSKNQKPNKKFFKNKKTTFKKKKGNCYVCGKPGHFANKC 172
K K + + K+ ++ K K + + K K T K+K C+ CG GHFA++C
Sbjct: 712 KDKSYGRRYGVRKSTSYKGKPHKSHVRIDKKKHLTMKRKDCKCFACGDIGHFASEC 767
>gi|319656531|gb|ADV58682.1| polyprotein [Banana streak IM virus]
Length = 1870
Score = 39.7 bits (91), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%)
Query: 117 KAKEITSKANIVKNEAHPSKNQKPNKKFFKNKKTTFKKKKGNCYVCGKPGHFANKC 172
K K + + K+ ++ K K + + K K T K+K C+ CG GHFA++C
Sbjct: 712 KDKSYGRRYGVRKSTSYKGKPHKSHVRIDKKKHLTMKRKDCKCFACGDIGHFASEC 767
>gi|440639171|gb|ELR09090.1| hypothetical protein GMDG_03674 [Geomyces destructans 20631-21]
Length = 330
Score = 39.7 bits (91), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 149 KTTFKKKKGNCYVCGKPGHFANKC 172
+T GNC+ CGKPGHF +KC
Sbjct: 269 RTAVPVPSGNCFKCGKPGHFQDKC 292
>gi|440636107|gb|ELR06026.1| hypothetical protein GMDG_07737, partial [Geomyces destructans
20631-21]
Length = 119
Score = 39.7 bits (91), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 149 KTTFKKKKGNCYVCGKPGHFANKC 172
+T GNC+ CGKPGHF +KC
Sbjct: 58 RTAVPAPSGNCFKCGKPGHFQDKC 81
>gi|440635826|gb|ELR05745.1| hypothetical protein GMDG_07588 [Geomyces destructans 20631-21]
Length = 166
Score = 39.7 bits (91), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 149 KTTFKKKKGNCYVCGKPGHFANKC 172
+T GNC+ CGKPGHF +KC
Sbjct: 105 RTAVPAPSGNCFKCGKPGHFQDKC 128
>gi|213496080|ref|YP_002321513.1| polyprotein [Bougainvillea spectabilis chlorotic vein-banding virus]
gi|154354401|gb|ABS76283.1| polyprotein [Bougainvillea spectabilis chlorotic vein-banding virus]
Length = 2252
Score = 39.7 bits (91), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 118 AKEITSKANIVKNEAHPSKNQKPNKKFFKNKKTTFKK--KKGNCYVCGKPGHFANKCR 173
A++ + + + K + K + + + KNK+ + K +K CY+CG+ GHFA +CR
Sbjct: 1081 ARDSSKRYGMRKANTYKGKPHRTHARVIKNKEKSKKGVIRKCKCYICGEDGHFARECR 1138
>gi|147778082|emb|CAN76493.1| hypothetical protein VITISV_007584 [Vitis vinifera]
Length = 1120
Score = 39.7 bits (91), Expect = 0.86, Method: Composition-based stats.
Identities = 31/168 (18%), Positives = 70/168 (41%), Gaps = 22/168 (13%)
Query: 26 WIKANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQNFKMAED---- 81
W + +K+ S I++++S L + + + +Y+ W +L K Y + + + ++ ED
Sbjct: 72 WFRQDKLILSAIMTSVSPTLIPLIATSQTSYQAWTKLTKLY-VSRSRTRVMQLKEDLTLM 130
Query: 82 ----KEVTSQIHGFHMLIND-------LKNENIILPESFMTIDQLEKAKEITS------K 124
+ + +H + ++ L +I L +D ++ +T+
Sbjct: 131 QRGNRSIIEYLHSVKTIADELALIDAPLSPYDITLYAYLRRLDSTTQSLVVTANTTQRRN 190
Query: 125 ANIVKNEAHPSKNQKPNKKFFKNKKTTFKKKKGNCYVCGKPGHFANKC 172
+ KN++ + Q N K++++ K C C + GH A C
Sbjct: 191 SRFSKNQSSSTYQQSKNDSRSKSRQSKQYKYPPRCQYCDQQGHIAKYC 238
>gi|403169973|ref|XP_003329384.2| hypothetical protein PGTG_10436 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375168502|gb|EFP84965.2| hypothetical protein PGTG_10436 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 343
Score = 39.7 bits (91), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 69/180 (38%), Gaps = 27/180 (15%)
Query: 18 NYEVLLQNWIKANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKY---------II 68
N E +W + V RSTI TLS +L Y K A +++ Q+ + Y ++
Sbjct: 119 NPEEFRTDWDTLSDVARSTIKLTLSVDLSIRYRDIKPASKLYDQICEAYEKNTRARRLML 178
Query: 69 EDAGAQNFKMAEDKEVTSQIHGFHMLINDLKNENIILPESFMTIDQLEKA---------- 118
EDA K + + I M +DL + + P + D+L +
Sbjct: 179 EDA-FWTAKHDPNVPIAKWIAPVRMAASDLTSVKLT-PHNQQVCDRLLRGLDDSWKPIRD 236
Query: 119 ------KEITSKANIVKNEAHPSKNQKPNKKFFKNKKTTFKKKKGNCYVCGKPGHFANKC 172
E+ I E+H Q + + T K K C+ CG+ GH ++KC
Sbjct: 237 HLVYSPNEVLLDGTIGALESHEVSTQVSTDHYDASASMTKAKPKLGCWNCGQKGHHSSKC 296
>gi|90657665|gb|ABD96963.1| hypothetical protein [Cleome spinosa]
Length = 408
Score = 39.7 bits (91), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 37/207 (17%), Positives = 80/207 (38%), Gaps = 49/207 (23%)
Query: 30 NKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIED--------AGAQNFKMAED 81
++ R+ I+ L++++ + A+ IW +L + +I + F+M
Sbjct: 95 SRRARNLIVLALADQVLRKVISERTAFGIWRKLERLHIEQSLPNRMYLMQRVSGFRMDSS 154
Query: 82 KEVTSQIHGFHMLINDLKNENIILPESFMTIDQL-------EKAKEIT--SKANIVKNEA 132
+ + + F L++DL + N+ + E + + L E+ +E+ S+A I E
Sbjct: 155 RTIEENLDIFQKLLSDLHSLNVKVEEEYQAVYLLNSLPPAYEQLREVLKYSRATISVEEV 214
Query: 133 HPSKNQKPNKKFFKNKKTTFKKKKGN-----------------------CYVCGKPGHFA 169
+ K + + T + G C+ CGK GH+
Sbjct: 215 KAAARMKELELLAQG---TLTRGTGEGLVVKGKPEKSGGGKKKAKDQVECWYCGKKGHYK 271
Query: 170 NKCRYRKGDHKPPKANLVDGEDIIVAV 196
+CR R+ + +G+ ++ +V
Sbjct: 272 KECRSRRAKEE------TEGKGVVASV 292
>gi|308462808|ref|XP_003093684.1| hypothetical protein CRE_23121 [Caenorhabditis remanei]
gi|308249484|gb|EFO93436.1| hypothetical protein CRE_23121 [Caenorhabditis remanei]
Length = 878
Score = 39.7 bits (91), Expect = 0.89, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 7/70 (10%)
Query: 130 NEAHPSKNQKPNKKFFKNKKTTFKKKKGNCYVCGKPGHFANKCRYR------KGDHKPPK 183
++ + KP+K + K + ++KG C+ C + GHFA +C + K D +P
Sbjct: 727 SQVQEAVESKPSKLTKRPKLQSTPRRKGTCHYCKEEGHFARECHKKAKLVASKKDQRPNP 786
Query: 184 ANLVD-GEDI 192
++D GEDI
Sbjct: 787 PTILDRGEDI 796
>gi|270017178|gb|EFA13624.1| hypothetical protein TcasGA2_TC005269 [Tribolium castaneum]
Length = 413
Score = 39.7 bits (91), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 14/18 (77%), Positives = 15/18 (83%)
Query: 159 CYVCGKPGHFANKCRYRK 176
C+VCGKPGHFA CR RK
Sbjct: 381 CFVCGKPGHFAAVCRNRK 398
Score = 39.3 bits (90), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 55/106 (51%), Gaps = 9/106 (8%)
Query: 73 AQNFKMAEDKEVTSQ-IHGFHMLINDLKNE----NIILPESFMTIDQLEKAKEITSKANI 127
A+ F M D E++ + I I+++K + NI +F+T++ ++ ++AN
Sbjct: 262 AETFLMFSDPEMSKRDIKNLVFKISEVKKKSLINNISADSAFVTMN--DRTHRQQTEANR 319
Query: 128 VKNEAHPSKNQKPNKKFFKNKKTTFKKKKGNCYVCGKPGHFANKCR 173
+ ++ + ++ F N +T K + C+ CGKPGH+A+ CR
Sbjct: 320 SRTSHEENRKWENRRQQFPNTRT--KDGRPICFSCGKPGHYASVCR 363
>gi|270017181|gb|EFA13627.1| hypothetical protein TcasGA2_TC005272 [Tribolium castaneum]
Length = 971
Score = 39.3 bits (90), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 55/106 (51%), Gaps = 9/106 (8%)
Query: 73 AQNFKMAEDKEVTSQ-IHGFHMLINDLKNE----NIILPESFMTIDQLEKAKEITSKANI 127
A+ F M D E++ + I I+++K + NI +F+T++ ++ ++AN
Sbjct: 262 AETFLMFSDPEMSKRDIKNLVFKISEVKKKSLINNISADSAFVTMN--DRTHRQQTEANR 319
Query: 128 VKNEAHPSKNQKPNKKFFKNKKTTFKKKKGNCYVCGKPGHFANKCR 173
+ ++ + ++ F N +T K + C+ CGKPGH+A+ CR
Sbjct: 320 SRTSHEENRKWENRRQQFPNTRT--KDGRPICFSCGKPGHYASVCR 363
Score = 39.3 bits (90), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 14/18 (77%), Positives = 15/18 (83%)
Query: 159 CYVCGKPGHFANKCRYRK 176
C+VCGKPGHFA CR RK
Sbjct: 381 CFVCGKPGHFAAVCRNRK 398
>gi|332019981|gb|EGI60441.1| Copia protein [Acromyrmex echinatior]
Length = 254
Score = 39.3 bits (90), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 56/224 (25%), Positives = 90/224 (40%), Gaps = 56/224 (25%)
Query: 1 MNLAEFLTEPPPDSDSENYEVLLQNWIKANKVCRSTILSTLSNELYDVYSQHKFAYEIWA 60
++A+ E P D+ L +W K + + RS + +L + +++ K + ++W
Sbjct: 33 FDVADGSREQPTDA-------TLADWKKKDALARSLLSKSLDDAHFNLVVACKSSADMWK 85
Query: 61 QLRKKYIIEDAGAQNFKMAE-----------DKEVTSQIHGFHMLINDLK-------NEN 102
L Y D + K+A D VTS I G ++ N LK E
Sbjct: 86 TLVGHY---DEVSNTTKLAALEAYNDYHWKNDMTVTSYISGLMLIENKLKAQKLNIEKEM 142
Query: 103 II------LPESF--------------MTIDQLE-KAKEITSKANIVKNEAHP-----SK 136
II LP+ F +T++QL+ K ++ N+ + H K
Sbjct: 143 IITKIVRGLPQKFDNFKQVWRICPTKDITVEQLQAKLLDVERDVNVTSSGNHGVALSGQK 202
Query: 137 NQKPNKKFFKNKKTTFK--KKKGNCYVCGKPGHFANKCRYRKGD 178
+QK + F KK +K +KK C+ C GHFA C K D
Sbjct: 203 DQKDREVFKDKKKAGWKKDRKKLQCHNCKGFGHFARDCPSEKKD 246
>gi|440638915|gb|ELR08834.1| hypothetical protein GMDG_03508 [Geomyces destructans 20631-21]
Length = 393
Score = 39.3 bits (90), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 140 PNKKFFKNKKTTFKKKKGNCYVCGKPGHFANKC 172
P + +TT GNC+ CGK GHF +KC
Sbjct: 323 PKPAIPERVRTTVPASSGNCFKCGKTGHFQDKC 355
>gi|440638644|gb|ELR08563.1| hypothetical protein GMDG_03258 [Geomyces destructans 20631-21]
Length = 167
Score = 39.3 bits (90), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 149 KTTFKKKKGNCYVCGKPGHFANKC 172
+T GNC+ CGKPGHF +KC
Sbjct: 106 RTAVPAPSGNCFKCGKPGHFQDKC 129
>gi|62327617|ref|YP_224289.1| ORF III polyprotein [Banana streak Mysore virus]
gi|58618162|gb|AAW80648.1| ORF III polyprotein [Banana streak Mysore virus]
Length = 1869
Score = 39.3 bits (90), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 139 KPNKKFFK-NKKTTFKKKKGNCYVCGKPGHFANKCR 173
KP+K K +K+ + KK CY CG+ GH+A++CR
Sbjct: 742 KPHKTHIKIDKRKYLRNKKCKCYACGEEGHYASECR 777
>gi|440633199|gb|ELR03118.1| hypothetical protein GMDG_05951 [Geomyces destructans 20631-21]
Length = 199
Score = 39.3 bits (90), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 140 PNKKFFKNKKTTFKKKKGNCYVCGKPGHFANKCRY----RKGDHKPPK 183
P ++ KT GNC+ CGKP HF +KC RK PP+
Sbjct: 118 PKTTMLEHVKTAVPASPGNCFKCGKPSHFQDKCPLMLLSRKSTVTPPR 165
>gi|77551394|gb|ABA94191.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1060
Score = 39.3 bits (90), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 63/157 (40%), Gaps = 51/157 (32%)
Query: 74 QNFKMAEDKEVTSQIHGFHMLINDLKNENIILPESFM----------------------- 110
++KMA+++ V Q H + +L+ +LP+ F+
Sbjct: 77 HDYKMADNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKR 136
Query: 111 ----------TIDQLEKAKE--ITSKANIVKNEA---HPSKNQKPNKKFFKNKKTTFK-- 153
++D EKA+E SK + ++ A H ++N+ K +K ++TT
Sbjct: 137 QEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGK--YKAQQTTNFKK 194
Query: 154 ---------KKKGNCYVCGKPGHFANKCRYRKGDHKP 181
+ + C+VCG+ GH KC RKG P
Sbjct: 195 QKKNNNNPNQDERTCFVCGQVGHLDRKCPQRKGMKAP 231
>gi|77555208|gb|ABA98004.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 811
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 70/166 (42%), Gaps = 29/166 (17%)
Query: 34 RSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQNFKMAEDKEVTSQIHGFHM 93
R T++S L++ + DVY +W K+ + D ++ + M Q + + M
Sbjct: 32 RGTLISILADNIVDVYMHMPSGKVMWNAFEAKFGVSDTSSELYVM-------EQFYDYEM 84
Query: 94 LINDLKNENIILPESFMTIDQLEKAKEITSKANIVK----NEAHPSKNQKPNKKFFKNKK 149
+ D + + Q K E S AN+V+ + +H + N+K
Sbjct: 85 V--DYREGE--------SKGQQGKNIEGGSSANLVQKKNPHASHNNNNKKVKPDVKPKAT 134
Query: 150 TTFKKKKGN-----CYVCGKPGHFANKCRYRKGDHKPPKANLVDGE 190
T FK K C+VCGKP H+A C RK D K AN+V E
Sbjct: 135 TNFKDKGKGKAKGDCFVCGKPRHWAKNCPNRK-DKK--SANMVISE 177
>gi|356566709|ref|XP_003551572.1| PREDICTED: uncharacterized protein LOC100804842 [Glycine max]
Length = 651
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 23 LQNWIKANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQNF 76
L W + + +C + IL+ L+++LYD YS +K A +W L +KY E+AG + +
Sbjct: 314 LAIWNENDYLCNNFILNGLADDLYD-YSPYKSAKLVWLALEEKYDTEEAGTKKY 366
>gi|449433026|ref|XP_004134299.1| PREDICTED: uncharacterized protein LOC101205072 [Cucumis sativus]
Length = 468
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 47/214 (21%), Positives = 88/214 (41%), Gaps = 54/214 (25%)
Query: 24 QNWIKANKVCRSTILSTLSNELYDVYSQHKF-AYEIWAQLRKKYIIEDAGAQN------- 75
Q W++ + +CR IL++LS+ L++ YS+ A E+W +L+ Y++E+ G +
Sbjct: 252 QKWMRDDHMCRRNILNSLSDRLFNEYSKKTMSASELWKELKLLYLLEEFGTKRSQVKKYL 311
Query: 76 -FKMAEDKEVTSQIHGFHMLINDLKNENIILPESF------------------------- 109
FKM E+K + Q+ + + + + + ++ E F
Sbjct: 312 EFKMVEEKSILEQVEELNHIADSIGSSGTVIDEDFHVSAIISKLPLSWKNVWVNLMHEQY 371
Query: 110 MTIDQLEKAKEITSKANIVKNEA------------------HPSK--NQKPNKKFFKNKK 149
+ + +L I + KN HPSK + KP + K+
Sbjct: 372 LPLRKLTDRLRIEEQLRTQKNSRLSGVSSSPTPRGQHHAANHPSKMGDPKPVTVPLRKKE 431
Query: 150 TTFKKKKGNCYVCGKPGHFANKCRYRKGDHKPPK 183
+ K C CGK GH + C +K +++ P+
Sbjct: 432 CQKEVKTLLCLDCGKEGHTSPNCPTKKVNNEVPR 465
>gi|307180736|gb|EFN68626.1| cGMP-dependent protein kinase, isozyme 1 [Camponotus floridanus]
Length = 2471
Score = 39.3 bits (90), Expect = 1.1, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 10/71 (14%)
Query: 44 ELYDVYSQHKFAY---------EIWAQLRKKYIIEDAGAQNFKMAEDKEVTSQIHGFHML 94
+LY Y +K+ Y ++W L+K+ +DA AQ F + E +H +++
Sbjct: 2225 KLYQTYKDNKYVYFLMEVCLGGDVWTTLQKRRCFDDATAQ-FMVGCVVEALDHLHSLNIV 2283
Query: 95 INDLKNENIIL 105
DLK EN++L
Sbjct: 2284 YRDLKPENLML 2294
>gi|311788791|ref|YP_003987465.1| polyprotein [Pineapple bacilliform comosus virus]
gi|307716263|gb|ADN88182.1| polyprotein [Pineapple bacilliform comosus virus]
Length = 1907
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 139 KPNKKFFKNKKTT-FKKKKGNCYVCGKPGHFANKCRYRK----GDHKPPKANLVDGEDII 193
KP+K + KT K +K CY+CG+ GHFA C+ K H + ++ DG D++
Sbjct: 796 KPHKSHIRIDKTKHLKNRKCKCYICGEEGHFARDCKNPKKIVDRVHVLEELDIQDGMDVV 855
>gi|449478205|ref|XP_004155250.1| PREDICTED: uncharacterized LOC101205072 [Cucumis sativus]
Length = 468
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 47/214 (21%), Positives = 88/214 (41%), Gaps = 54/214 (25%)
Query: 24 QNWIKANKVCRSTILSTLSNELYDVYSQHKF-AYEIWAQLRKKYIIEDAGAQN------- 75
Q W++ + +CR IL++LS+ L++ YS+ A E+W +L+ Y++E+ G +
Sbjct: 252 QKWMRDDHMCRRNILNSLSDRLFNEYSKKTMSASELWKELKLLYLLEEFGTKRSQVKKYL 311
Query: 76 -FKMAEDKEVTSQIHGFHMLINDLKNENIILPESF------------------------- 109
FKM E+K + Q+ + + + + + ++ E F
Sbjct: 312 EFKMVEEKSILEQVEELNHIADSIGSSGTVIDEDFHVSAIISKLPLSWKNVWVNLMHEQY 371
Query: 110 MTIDQLEKAKEITSKANIVKNEA------------------HPSK--NQKPNKKFFKNKK 149
+ + +L I + KN HPSK + KP + K+
Sbjct: 372 LPLRKLTDRLRIEEQLRTQKNSRLSGVSSSPTPRGQHHAANHPSKMGDPKPVTVPLRKKE 431
Query: 150 TTFKKKKGNCYVCGKPGHFANKCRYRKGDHKPPK 183
+ K C CGK GH + C +K +++ P+
Sbjct: 432 CQKEVKTLLCLDCGKEGHTSPNCPTKKVNNEVPR 465
>gi|77551023|gb|ABA93820.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1166
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 16/24 (66%)
Query: 158 NCYVCGKPGHFANKCRYRKGDHKP 181
C+VCG+PGH A KC RKG P
Sbjct: 132 TCFVCGQPGHLAKKCPQRKGMKAP 155
>gi|440633193|gb|ELR03112.1| hypothetical protein GMDG_05950 [Geomyces destructans 20631-21]
Length = 264
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 149 KTTFKKKKGNCYVCGKPGHFANKC 172
+T GNC+ CGKPGHF +KC
Sbjct: 203 RTAIPVPSGNCFKCGKPGHFQDKC 226
>gi|31126728|gb|AAP44650.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 566
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 12/84 (14%)
Query: 37 ILSTLSNELYDVYSQHKFAYEIWAQLRKK----------YIIEDAGAQNFKMAEDKEVTS 86
ILS L + L +VY A E+W L K YI+E ++KMA+++ V
Sbjct: 65 ILSVLGDRLVEVYMHMTDAKELWDALNTKFGATNASNDLYIMEQF--HDYKMADNRSVVE 122
Query: 87 QIHGFHMLINDLKNENIILPESFM 110
+ H + +L+ +LP+ F+
Sbjct: 123 EAHEIQTIAKELELLKCVLPDKFV 146
>gi|308468624|ref|XP_003096554.1| hypothetical protein CRE_09731 [Caenorhabditis remanei]
gi|308243004|gb|EFO86956.1| hypothetical protein CRE_09731 [Caenorhabditis remanei]
Length = 626
Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Query: 139 KPNKKFFKNKKTTFKKKKGNCYVCGKPGHFANKCRYR------KGDHKPPKANLVD-GED 191
KP+K + K + ++KG C+ C + GHFA +C + K D +P ++D GED
Sbjct: 484 KPSKLTKRPKLQSTPRRKGTCHYCKEEGHFARECHKKAKLVASKKDQRPNHPAILDRGED 543
Query: 192 I 192
I
Sbjct: 544 I 544
>gi|38345526|emb|CAD41296.2| OSJNBa0020J04.1 [Oryza sativa Japonica Group]
Length = 1763
Score = 38.9 bits (89), Expect = 1.2, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query: 159 CYVCGKPGHFANKC-RYRKGDHKPPKANLVDGEDIIVAVV--VTQENMV 204
C+ C +PGHFA+KC + R+ +PP DG+D+I V VT E+++
Sbjct: 690 CFNCFEPGHFADKCPKPRRQQGQPPPRPNNDGKDVIWGRVNHVTAEDVL 738
>gi|119181135|ref|XP_001241810.1| hypothetical protein CIMG_05706 [Coccidioides immitis RS]
Length = 566
Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 68/165 (41%), Gaps = 32/165 (19%)
Query: 24 QNWIKANKVCRSTILSTLSNELYDVY--SQHKFAYEIWAQLRKKYIIEDAGAQNFKMAED 81
Q W N S I S +S + + + S AY++W +R + Q +
Sbjct: 102 QYWNVQNNWLHSLINSIISAQAREHFKKSDSLSAYKLWEAVRTAF-------QERPEIQQ 154
Query: 82 KEVTSQIHGFHMLINDLKNENIILPESFMTIDQLEKAKEITSKANIVKNEAHPSKNQKPN 141
+ + ++++ F M N LPE D K+I + I K + ++ KPN
Sbjct: 155 ESLLTELNQFDMACQSRTN----LPEK----DLEGLLKDILHQ--IFKKDLKKGRSTKPN 204
Query: 142 --------KKFFKNKKTTFKKKKG-----NCYVCGKPGHFANKCR 173
+K +KN + +K NCY+CGKPGH A C+
Sbjct: 205 TNATSSDPQKSYKNTNSESNPEKSSLQNWNCYICGKPGHLAKFCK 249
>gi|336362934|gb|EGN91468.1| hypothetical protein SERLA73DRAFT_80432 [Serpula lacrymans var.
lacrymans S7.3]
Length = 307
Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 43/105 (40%), Gaps = 22/105 (20%)
Query: 92 HMLINDLKNENIILPES-------FMTIDQLEKAKEITSKANIVKNEAHPSKNQKPNKKF 144
+ + D +N+N+ L M + Q+ + T+K N+ + S +Q + F
Sbjct: 186 QIYLQDTRNKNLALAAEEVQRVGRAMELYQMHQGGGSTTKNNVSQRRPGSSNHQNHSHGF 245
Query: 145 ---------------FKNKKTTFKKKKGNCYVCGKPGHFANKCRY 174
+ ++ KGNCY CG+ GH + +CRY
Sbjct: 246 KPFGLQPGQGAPMDIGAVQGGQMRRFKGNCYNCGQEGHMSRECRY 290
>gi|50549839|ref|XP_502391.1| YALI0D04136p [Yarrowia lipolytica]
gi|49648259|emb|CAG80579.1| YALI0D04136p [Yarrowia lipolytica CLIB122]
Length = 387
Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Query: 131 EAHPSKNQKPNKKF-----FKNKKTTFKKKKGNCYVCGKPGHFANKC 172
E PS ++PN KF +K+ T +++KG C C KPGH +C
Sbjct: 322 ERKPSSAKRPNGKFTHTGRLTSKEKTRRQEKGLCLYCAKPGHARPQC 368
>gi|242095220|ref|XP_002438100.1| hypothetical protein SORBIDRAFT_10g008010 [Sorghum bicolor]
gi|241916323|gb|EER89467.1| hypothetical protein SORBIDRAFT_10g008010 [Sorghum bicolor]
Length = 234
Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 7/106 (6%)
Query: 30 NKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQNFKMAEDKEVTSQIH 89
+ VCR IL+TLS+ L Y + A ++W L + Y ++ K D +
Sbjct: 57 DAVCRGHILATLSDRLLPDYHRFATAADLWRALARTYHVDTPRVWRDKF--DAFEFEEGA 114
Query: 90 GFHMLINDLKNENII-----LPESFMTIDQLEKAKEITSKANIVKN 130
G +L+ + + + LPE F+ + + E+ S A ++++
Sbjct: 115 GGAVLLEQIAHAEALGVAARLPEGFVAYELCGRLPEVVSDAVVMRS 160
>gi|332308942|ref|YP_004442830.1| polyprotein [Banana streak UL virus]
gi|331029459|gb|AEC49881.1| polyprotein [Banana streak UL virus]
Length = 1833
Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Query: 122 TSKANIVKNEAHPSKNQKPNKKFFKNKKTTFKKKKGNCYVCGKPGHFANKCRYRKGDHKP 181
T + K + H + + +K+ + +K K CYVCG+ GHFA +C+ +K +
Sbjct: 710 TRRTTTYKGKPHHTHARIDRRKYLQARK-----KNCRCYVCGEEGHFAKECKSQKKIQE- 763
Query: 182 PKANLVDGEDI 192
+ N+V+ DI
Sbjct: 764 -RVNIVNELDI 773
>gi|3929302|gb|AAC79863.1| P194 [Rice tungro bacilliform virus]
Length = 678
Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 154 KKKGNCYVCGKPGHFANKCRYRKGDHKPPKANLVDG-EDIIVAVVVTQENM 203
KKK CY+C H AN+C R + +A+L+DG E+ IV++ E++
Sbjct: 380 KKKCRCYICQDENHLANRCPRRYTNQ--ARASLIDGLEEDIVSIASDDEDI 428
>gi|303319499|ref|XP_003069749.1| copia-like retrotransposon family protein [Coccidioides posadasii
C735 delta SOWgp]
gi|240109435|gb|EER27604.1| copia-like retrotransposon family protein [Coccidioides posadasii
C735 delta SOWgp]
Length = 1536
Score = 38.9 bits (89), Expect = 1.5, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 122 TSKANIVKNEAHPSKNQKPNKKFFKNKKTTFKKKKGNCYVCGKPGHFANKCRYRKGDHKP 181
++K N + P K+ K +K++ + NCY+CGKPGH A C+ K + KP
Sbjct: 355 STKPNTNATSSDPQKSYKNTNSESNPEKSSLQN--WNCYICGKPGHLAKFCKSNK-NSKP 411
>gi|108710304|gb|ABF98099.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 504
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 12/86 (13%)
Query: 35 STILSTLSNELYDVYSQHKFAYEIWAQLRKK----------YIIEDAGAQNFKMAEDKEV 84
ILS L + L +VY A E+W L K YI+E ++KMA+++ V
Sbjct: 63 GCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATNASNDLYIMEQF--HDYKMADNRSV 120
Query: 85 TSQIHGFHMLINDLKNENIILPESFM 110
+ H + +L+ +LP+ F+
Sbjct: 121 VEEAHEIQTIAKELELLKCVLPDKFV 146
>gi|9759493|dbj|BAB10743.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
Length = 1109
Score = 38.9 bits (89), Expect = 1.5, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 23 LQNWIKANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQNFKMAEDK 82
L++W+ N + S + T+ +EL S A ++W Q+RK++ + + G +N KM D
Sbjct: 77 LEDWLTINALLVSWMKMTIDSELLTNISHRDVARDLWEQIRKRFFVSN-GPKNQKMKADL 135
Query: 83 EVTSQ----IHGFHMLINDL 98
Q + G++ +N +
Sbjct: 136 ATCKQEGMTMEGYYGKLNKI 155
>gi|38503656|gb|AAR22621.1| gag protein [Small ruminant lentivirus]
Length = 239
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 143 KFFKNKKTTFKKKKGN-CYVCGKPGHFANKCR 173
+ + +KT+ +++G CY CGKPGH A +CR
Sbjct: 162 QALRTEKTSGSRREGQKCYNCGKPGHLARQCR 193
>gi|9625567|ref|NP_039820.1| polyprotein [Commelina yellow mottle virus]
gi|130594|sp|P19199.2|POL_COYMV RecName: Full=Polyprotein P3; Includes: RecName: Full=Putative
movement protein; Short=MP; Includes: RecName:
Full=Capsid protein; AltName: Full=Coat protein;
Short=CP; Includes: RecName: Full=Protease; Short=PR;
Includes: RecName: Full=Reverse transcriptase; Short=RT;
Includes: RecName: Full=Ribonuclease H
gi|59050|emb|CAA37110.1| unnamed protein product [Commelina yellow mottle virus]
Length = 1886
Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 20/27 (74%)
Query: 154 KKKGNCYVCGKPGHFANKCRYRKGDHK 180
++K CY+CG+ GH+AN+CR + D +
Sbjct: 876 QRKCKCYICGQEGHYANQCRNKHKDQQ 902
>gi|405954050|gb|EKC21588.1| hypothetical protein CGI_10003680 [Crassostrea gigas]
Length = 241
Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 149 KTTFKKKKGNCYVCGKPGHFANKC 172
KTT KK G+CY CG+PGH++ C
Sbjct: 90 KTTQGKKPGSCYTCGEPGHYSPDC 113
>gi|300123580|emb|CBK24852.2| unnamed protein product [Blastocystis hominis]
Length = 335
Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 138 QKPNKKFFKNKKTTFKKKKGNCYVCGKPGHFANKCRYRK-GD 178
Q P++ + T ++ G C++CGK GHFA+KC +K GD
Sbjct: 267 QCPSRNSHRTAHTAAQENGGACFICGKMGHFASKCPLKKRGD 308
>gi|281211450|gb|EFA85613.1| LTR-retrotransposon skipper [Polysphondylium pallidum PN500]
Length = 1686
Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 156 KGNCYVCGKPGHFANKCRYRKGDHKPPKANLVDGEDIIVAVVVTQENMVAA 206
K CYVCGK GH A C Y K +K N ++ I AV+ Q+ +
Sbjct: 346 KPTCYVCGKVGHLAKDC-YFKNKNKDATVNFINSTPAIQAVINDQKTVAVV 395
>gi|440637367|gb|ELR07286.1| hypothetical protein GMDG_08357 [Geomyces destructans 20631-21]
Length = 127
Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 140 PNKKFFKNKKTTFKKKKGNCYVCGKPGHFANKC 172
P + +T GNC+ CGKP HF +KC
Sbjct: 57 PKPALLERVRTAVPAPSGNCFKCGKPSHFQDKC 89
>gi|26006410|gb|AAN77285.1| Gag-Pro-Pol protein [Python curtus endogenous retrovirus]
Length = 943
Score = 38.5 bits (88), Expect = 1.8, Method: Composition-based stats.
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 154 KKKGNCYVCGKPGHFANKCRYRKG 177
+ GNC+ CGKPGHF ++CR G
Sbjct: 55 RPAGNCFNCGKPGHFKSQCRAPGG 78
>gi|145476343|ref|XP_001424194.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124391257|emb|CAK56796.1| unnamed protein product [Paramecium tetraurelia]
Length = 161
Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/21 (71%), Positives = 15/21 (71%)
Query: 153 KKKKGNCYVCGKPGHFANKCR 173
KKK G CY CGK GHFA CR
Sbjct: 85 KKKDGACYQCGKQGHFARNCR 105
>gi|2961349|emb|CAA18107.1| LTR retrotransposon like protein [Arabidopsis thaliana]
gi|7269049|emb|CAB79159.1| LTR retrotransposon like protein [Arabidopsis thaliana]
Length = 1109
Score = 38.5 bits (88), Expect = 1.9, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 23 LQNWIKANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQNFKMAEDK 82
L++W+ N + S + T+ +EL S A ++W Q+RK++ + + G +N KM D
Sbjct: 77 LEDWLTINALLVSWMKMTIDSELLTNISHRDVARDLWEQIRKRFSVSN-GPKNQKMKADL 135
Query: 83 EVTSQ----IHGFHMLINDL 98
Q + G++ +N +
Sbjct: 136 ATCKQEGMTVEGYYGKLNKI 155
>gi|440639186|gb|ELR09105.1| hypothetical protein GMDG_03689 [Geomyces destructans 20631-21]
Length = 450
Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 149 KTTFKKKKGNCYVCGKPGHFANKC 172
KT GNC+ CGKP HF +KC
Sbjct: 389 KTAVPASSGNCFKCGKPSHFQDKC 412
>gi|116309193|emb|CAH66288.1| OSIGBa0161P06.5 [Oryza sativa Indica Group]
Length = 1471
Score = 38.5 bits (88), Expect = 1.9, Method: Composition-based stats.
Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 6/100 (6%)
Query: 74 QNFKMAEDKEVTSQ-IHGFHMLINDLKNENIILPESFMTIDQLEKAKEITSKANIVKNEA 132
+ F D E+T+Q I G + L ++ I + +D+ KA + + +
Sbjct: 224 EKFMAGLDDELTNQLISGDYADFERLVDKAIRQEDQRNKMDRKRKAAQFRAHQGTPRPPM 283
Query: 133 HPSKNQKPNKKFFKNKKTTFKKKKGNCYVCGKPGHFANKC 172
P+++ +P + KK T K G+C+ CG+ GHFA+KC
Sbjct: 284 APAQSGQPAQA----KKET-GAKPGSCFNCGELGHFADKC 318
>gi|218198054|gb|EEC80481.1| hypothetical protein OsI_22711 [Oryza sativa Indica Group]
Length = 360
Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 16/23 (69%)
Query: 159 CYVCGKPGHFANKCRYRKGDHKP 181
C+VCG+PGH A KC RKG P
Sbjct: 112 CFVCGQPGHLARKCPQRKGMKAP 134
>gi|145525018|ref|XP_001448331.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124415875|emb|CAK80934.1| unnamed protein product [Paramecium tetraurelia]
Length = 161
Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/21 (71%), Positives = 15/21 (71%)
Query: 153 KKKKGNCYVCGKPGHFANKCR 173
KKK G CY CGK GHFA CR
Sbjct: 85 KKKDGACYQCGKQGHFARNCR 105
>gi|119176023|ref|XP_001240146.1| predicted protein [Coccidioides immitis RS]
Length = 216
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Query: 158 NCYVCGKPGHFANKCRYRKGDHKP 181
NCY+CGKPGH A CR K + KP
Sbjct: 149 NCYICGKPGHLAKFCRSNK-NMKP 171
>gi|219884633|gb|ACL52691.1| unknown [Zea mays]
Length = 379
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
Query: 30 NKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQ--------NFKMAED 81
+K+ R ++S L + Y E+W L K+ + DAG++ ++KM E+
Sbjct: 220 DKLFRGAVISALDTKFQKSYIILPTGKELWDALVGKFGVTDAGSELYLMEQLYDYKMVEN 279
Query: 82 KEVTSQIHGFHMLINDLKNENIILPESFMT 111
+ V Q H F L +L+ LP+ F+
Sbjct: 280 RSVVEQAHEFQALAKELELFPCPLPDKFVV 309
>gi|322784783|gb|EFZ11588.1| hypothetical protein SINV_00313 [Solenopsis invicta]
Length = 114
Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 13/115 (11%)
Query: 66 YIIEDAGAQNFKMAEDKEVTSQIHGFHMLINDLKNENIILPESFMTIDQLEKAKEITSKA 125
Y+IE +Q + + I+ N+ +P+ + + ++ ++ T++
Sbjct: 4 YVIEGIPSQELRTQAKVQCYQSINAMLTAF-----ANVTVPKKILQKEFPQRQRDTTTEK 58
Query: 126 NIVKN-EAHPSKNQKPNKKFFKNK----KTTFKKKK---GNCYVCGKPGHFANKC 172
+N E H SK +P + + NK T KK K G+CY CGK GH AN+C
Sbjct: 59 IKPRNKEQHKSKEAEPQRCYNCNKVGHIATECKKAKREQGSCYKCGKFGHRANQC 113
>gi|48686545|emb|CAD59232.1| polyprotein [Cacao swollen shoot virus]
Length = 1839
Score = 38.1 bits (87), Expect = 2.1, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 122 TSKANIVKNEAHPSKNQKPNKKFFKNKKTTFKKKKGNCYVCGKPGHFANKCRYRKGDHK 180
TSK + K+ + K + + K +K + KK CY+CG GHFA +C ++ D K
Sbjct: 752 TSKYGMRKSRTYKGKPHASHARVEK-RKHLIRNKKCKCYLCGDEGHFARECPNQRRDVK 809
>gi|332308950|ref|YP_004442836.1| polyprotein [Banana streak CA virus]
gi|331029467|gb|AEC49887.1| polyprotein [Banana streak CA virus]
Length = 1836
Score = 38.1 bits (87), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 12/73 (16%)
Query: 129 KNEAHPSKNQKPNKKFFKNKKTTFKKKKGNCYVCGKPGHFANKC--------RYRKGDHK 180
K+ ++ K K + + K K +K+ CY CG+ GHFA++C R R D
Sbjct: 707 KSTSYKGKPHKSHVRIGKKKHLAARKRNCRCYACGEEGHFASECTNQKKIIDRVRVLD-- 764
Query: 181 PPKANLVDGEDII 193
+L DG D++
Sbjct: 765 --SLDLEDGLDVV 775
>gi|26006405|gb|AAN77283.1| Gag-Pro-Pol protein [Python molurus endogenous retrovirus]
Length = 1637
Score = 38.1 bits (87), Expect = 2.2, Method: Composition-based stats.
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 154 KKKGNCYVCGKPGHFANKCRYRKG 177
+ GNC+ CGKPGHF ++CR G
Sbjct: 443 RPAGNCFNCGKPGHFKSQCRAPGG 466
>gi|326507384|dbj|BAK03085.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 348
Score = 38.1 bits (87), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 46/218 (21%), Positives = 83/218 (38%), Gaps = 45/218 (20%)
Query: 1 MNLAEFLTEPPPDSDSENYEVLLQNWIKANKVCRSTILSTLSNELYDVYSQHKFAYEIWA 60
MN+ P + S +E + A + ++S + ++L D Y A ++
Sbjct: 132 MNVFWVAGVTPTGTISREHEKMFAG---ATILFLGAVISMIGDKLVDAYLHMHVAKDLCE 188
Query: 61 QLRKKYIIEDAGAQ--------NFKMAEDKEVTSQIHGFHMLINDLKNENIILPESF--- 109
L K+ + D G++ ++KM +++ + Q H + +L LP F
Sbjct: 189 VLESKFGVTDGGSEMYVMEQFHDYKMFDNRSILEQAHEIICIAKELDVLKCNLPGKFVAG 248
Query: 110 --------------MTIDQLEKAKEITSKA---NIVKNEAHPSK--NQKPNKKFFKNKKT 150
++++Q +A + KA + V N H + KP K + + T
Sbjct: 249 CIIAKLSVEDIIGHLSVEQNSRANDSNGKAVGSSYVANMVHQRNFNSHKPKGKNYVQQNT 308
Query: 151 ----------TFKKKKGNCYVCGKPGHFANKC--RYRK 176
KK CY CG H+ NKC +Y+K
Sbjct: 309 DFKKKGKKTFNKNKKGDGCYTCGSEEHWTNKCPNKYKK 346
>gi|255560368|ref|XP_002521199.1| conserved hypothetical protein [Ricinus communis]
gi|223539564|gb|EEF41151.1| conserved hypothetical protein [Ricinus communis]
Length = 92
Score = 38.1 bits (87), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 24 QNWIKANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIED 70
Q W +++ R IL+ +S+ L+DVY A E+W +L KY+ ED
Sbjct: 35 QKWETNDEIFRGHILNPMSDSLFDVYHSIPTAKELWDKLEIKYMQED 81
>gi|308498213|ref|XP_003111293.1| hypothetical protein CRE_03677 [Caenorhabditis remanei]
gi|308240841|gb|EFO84793.1| hypothetical protein CRE_03677 [Caenorhabditis remanei]
Length = 396
Score = 38.1 bits (87), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 13/90 (14%)
Query: 85 TSQIHGFHM-LINDLKNENIILPESFMTIDQLEKAKEITSKANIVKNEAHPSKNQKPNKK 143
TS + +H L+ + + +N + ID AKE+ S N E PSK K +
Sbjct: 238 TSSVASYHTSLVREDQEDNA---DPVSKIDSW--AKEMESVHN---QEESPSKELKCSG- 288
Query: 144 FFKNKKTTFKKKKGNCYVCGKPGHFANKCR 173
N K + K+K C+ CGK GHF +CR
Sbjct: 289 ---NSKKSTPKRKNTCFFCGKEGHFVKECR 315
>gi|321260524|ref|XP_003194982.1| hypothetical protein CGB_F6400C [Cryptococcus gattii WM276]
gi|317461454|gb|ADV23195.1| Hypothetical Protein CGB_F6400C [Cryptococcus gattii WM276]
Length = 687
Score = 38.1 bits (87), Expect = 2.2, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 49/121 (40%), Gaps = 20/121 (16%)
Query: 78 MAEDKEVTSQIHGFHMLINDLKNEN----IILPESFMTIDQLEKAKEITSKANIV----- 128
+ ED E Q F L D ++N + P+ + + + A+ SK ++
Sbjct: 58 LPEDPEFILQFATFRQLEGDKGDKNAQTWVGAPQIYHKMIAEKDARNNDSKKEMIIASVR 117
Query: 129 -KNEAHPSKNQKPNKKFFKNKKTTFKKKKGNCYVCGKPGHFANKC--RYRKGDHKPPKAN 185
E P+ N + K+ + KKT C+ CGK GH KC R + KPP
Sbjct: 118 KDQEVVPAGNGQGPKRSWIEKKT--------CFQCGKKGHLGRKCPSRTEEKSSKPPTKE 169
Query: 186 L 186
L
Sbjct: 170 L 170
>gi|9627249|ref|NP_041734.1| polyprotein [Cacao swollen shoot virus]
gi|347871|gb|AAA03171.1| polyprotein [Cacao swollen shoot virus]
Length = 1834
Score = 38.1 bits (87), Expect = 2.3, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 122 TSKANIVKNEAHPSKNQKPNKKFFKNKKTTFKKKKGNCYVCGKPGHFANKCRYRKGDHK 180
TSK + K+ + K + + K +K + KK CY+CG GHFA +C ++ D K
Sbjct: 752 TSKYGMRKSRTYKGKPHASHARVEK-RKHLIRNKKCKCYLCGDEGHFARECPNQRRDVK 809
>gi|12321355|gb|AAG50751.1|AC079733_19 polyprotein, putative [Arabidopsis thaliana]
Length = 1468
Score = 38.1 bits (87), Expect = 2.3, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 23 LQNWIKANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQNFKMAEDK 82
L++W+ N + S + T+ +EL S A ++W Q+RK++ + + G +N KM D
Sbjct: 77 LEDWLTINALLVSWMKMTIDSELLTNISHRDVARDLWEQIRKRFSVSN-GPKNQKMKADL 135
Query: 83 EVTSQ----IHGFHMLINDL 98
Q + G++ +N +
Sbjct: 136 ATCKQEGMTVEGYYGKLNKI 155
>gi|224073885|ref|XP_002304193.1| predicted protein [Populus trichocarpa]
gi|222841625|gb|EEE79172.1| predicted protein [Populus trichocarpa]
Length = 131
Score = 38.1 bits (87), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 19/114 (16%)
Query: 78 MAEDKEVTSQIHGF-----HMLINDLKNENIILPESFMTIDQLEK----AKEITSKANIV 128
M ++++V + I HM +N N+NI + +LE+ AK+ +KA I
Sbjct: 1 MTDEQQVQAVIRSLPSNWKHMRVNLTHNDNIKTFDDVARHVELEEDRFHAKKPINKAFIF 60
Query: 129 KNEAHPSKNQKPNKKFFKNKKTTFKKKKG----------NCYVCGKPGHFANKC 172
+ + + + K K K + K K+G NC+ CGKPG+FA C
Sbjct: 61 ETKMRGAYDSKYKKGGIKASSSGHKHKRGKHGGKKEKNMNCFNCGKPGYFARDC 114
>gi|145506761|ref|XP_001439341.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124406525|emb|CAK71944.1| unnamed protein product [Paramecium tetraurelia]
Length = 158
Score = 38.1 bits (87), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/21 (71%), Positives = 15/21 (71%)
Query: 153 KKKKGNCYVCGKPGHFANKCR 173
KKK G CY CGK GHFA CR
Sbjct: 85 KKKDGACYQCGKQGHFARNCR 105
>gi|427780885|gb|JAA55894.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 1358
Score = 38.1 bits (87), Expect = 2.3, Method: Composition-based stats.
Identities = 31/105 (29%), Positives = 53/105 (50%), Gaps = 10/105 (9%)
Query: 82 KEVTSQIHGFHMLINDLKNENIILPE--SFMTIDQLE---KAKEITS-KANIVKNEAHPS 135
+EV S H +LI D + + ++ P+ SF+T +++ +AKE+ AN ++ +H
Sbjct: 80 REVNSFEHLQALLIAD-RLKQLMPPDIRSFVTQGEMKGWLQAKELAELAANFEESTSHRV 138
Query: 136 KN-QKPNKKFFKN--KKTTFKKKKGNCYVCGKPGHFANKCRYRKG 177
N Q K ++ + + CY CG+PGHF C R+G
Sbjct: 139 SNYQNAMAKEMRHIHRANNLPLDRMLCYACGEPGHFQRDCSSRRG 183
>gi|145518057|ref|XP_001444906.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124412339|emb|CAK77509.1| unnamed protein product [Paramecium tetraurelia]
Length = 119
Score = 38.1 bits (87), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/21 (71%), Positives = 15/21 (71%)
Query: 153 KKKKGNCYVCGKPGHFANKCR 173
KKK G CY CGK GHFA CR
Sbjct: 85 KKKDGACYQCGKQGHFARNCR 105
>gi|332027865|gb|EGI67922.1| Copia protein [Acromyrmex echinatior]
Length = 369
Score = 38.1 bits (87), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 92/223 (41%), Gaps = 55/223 (24%)
Query: 1 MNLAEFLTEPPPDSDSENYEVLLQNWIKANKVCRSTILSTLSNELYDVYSQHKFAYEIWA 60
++A+ E P D+ L +W K + + RS + +L + +++ K + ++W
Sbjct: 33 FDVADGSREQPTDA-------TLADWKKKDALARSLLSKSLDDAHFNLVVACKSSADMWK 85
Query: 61 QLRKKYIIEDAGAQNFKMA-----------EDKEVTSQIHGFHMLINDLK-------NEN 102
L Y D + K+A +D VTS I G ++ N LK E
Sbjct: 86 TLVGHY---DEVSNTTKLAALKAYNDYHWKDDMTVTSYISGLMLIENKLKAQKLNIEKEM 142
Query: 103 II------LPESF--------------MTIDQLE-KAKEITSKANIVKNEAHP-----SK 136
II LP+ F +T++QL+ K ++ N+ + H K
Sbjct: 143 IITKIVRGLPQKFDNFKQVWRICPTKDITVEQLQAKLLDVKRDVNVTSSGNHDVALSGQK 202
Query: 137 NQKPNKKFFKNKKTTFKK-KKGNCYVCGKPGHFANKCRYRKGD 178
+QK + F KK +KK +K C+ C GHFA+ C K D
Sbjct: 203 DQKDREIFKGKKKAGWKKDRKKLCHNCKVFGHFAHDCPSEKKD 245
>gi|90398986|emb|CAJ86258.1| H0801D08.16 [Oryza sativa Indica Group]
Length = 1122
Score = 38.1 bits (87), Expect = 2.4, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 8/82 (9%)
Query: 37 ILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGA--------QNFKMAEDKEVTSQI 88
ILS L + +VY A E+W L K+ D ++KMA+++ V Q
Sbjct: 65 ILSVLGDRPVEVYMHMTDAKELWDALNTKFGATDVSNDLYIMEQFHDYKMADNRSVVEQA 124
Query: 89 HGFHMLINDLKNENIILPESFM 110
H + +L+ +LP+ F+
Sbjct: 125 HEIQTMAKELELLKCVLPDKFV 146
>gi|32487396|emb|CAE05730.1| OSJNBb0017I01.10 [Oryza sativa Japonica Group]
Length = 701
Score = 38.1 bits (87), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 8/91 (8%)
Query: 28 KANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAG--------AQNFKMA 79
+A + ILS L + +VY Q A E+W L K+ D ++KMA
Sbjct: 175 EATTLFVGCILSVLGDRPVEVYMQMTDAKELWDALNTKFGATDVSNDLYIMEQFHDYKMA 234
Query: 80 EDKEVTSQIHGFHMLINDLKNENIILPESFM 110
++ + Q H + +L+ +LP+ F+
Sbjct: 235 GNRSIVEQAHEIQTMAKELELLKCVLPDKFV 265
>gi|65362561|ref|YP_233110.1| putative polyprotein [Banana streak virus strain Acuminata Vietnam]
gi|53830363|gb|AAU95075.1| putative polyprotein [Banana streak virus strain Acuminata Vietnam]
Length = 1898
Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%)
Query: 117 KAKEITSKANIVKNEAHPSKNQKPNKKFFKNKKTTFKKKKGNCYVCGKPGHFANKC 172
K K K + K+ ++ K K + + K K K+K C+ CG GHFA++C
Sbjct: 723 KEKAYGRKYGVRKSTSYKGKPHKSHVRIDKKKHLLMKRKDCKCFACGDIGHFASEC 778
>gi|332304384|ref|YP_004442824.1| polyprotein [Banana streak UA virus]
gi|331029450|gb|AEC49874.1| polyprotein [Banana streak UA virus]
Length = 1878
Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 129 KNEAHPSKNQKPNKKFFKNKKTTFKKKKGNCYVCGKPGHFANKCR 173
K++ + K K + + K K +KK C+ CG+ GHFA++C+
Sbjct: 706 KSQNYHGKPHKSHVRIAKRKHLAMRKKDCKCFACGETGHFASECK 750
>gi|95020641|ref|YP_605811.1| ORFIII [Banana streak virus]
gi|68566426|gb|AAY99427.1| ORFIII [Banana streak virus Acuminata Yunnan]
Length = 1900
Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%)
Query: 117 KAKEITSKANIVKNEAHPSKNQKPNKKFFKNKKTTFKKKKGNCYVCGKPGHFANKC 172
K K K + K+ ++ K K + + K K K+K C+ CG GHFA++C
Sbjct: 725 KDKAYGRKYGVRKSTSYKGKPHKSHVRIDKKKHLLMKRKDCKCFACGDVGHFASEC 780
>gi|281201580|gb|EFA75789.1| hypothetical protein PPL_10844 [Polysphondylium pallidum PN500]
Length = 1798
Score = 38.1 bits (87), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 159 CYVCGKPGHFANKCRYRKGDHKPPKANLVDGEDIIVAVVVTQENMVAA 206
CYVCGK GH A C Y K +K N ++ I AV+ Q+ +
Sbjct: 349 CYVCGKVGHLAKDC-YFKNKNKDATVNFINSTPAIQAVINDQKTVAVV 395
>gi|427791205|gb|JAA61054.1| Hypothetical protein, partial [Rhipicephalus pulchellus]
Length = 284
Score = 38.1 bits (87), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 53/105 (50%), Gaps = 10/105 (9%)
Query: 82 KEVTSQIHGFHMLINDLKNENIILPE--SFMTIDQLE---KAKEITS-KANIVKNEAHPS 135
+EV S H +LI D + + ++ P+ SF+T +++ +AKE+ AN ++ +H
Sbjct: 137 REVNSFEHLQALLIAD-RLKQLMPPDIRSFVTQGEMKGWLQAKELAELAANFEESTSHRV 195
Query: 136 KN-QKPNKKFFKN--KKTTFKKKKGNCYVCGKPGHFANKCRYRKG 177
N Q K ++ + + CY CG+PGHF C R+G
Sbjct: 196 SNYQNAMAKEMRHIHRANNLPLDRMLCYACGEPGHFQRDCSSRRG 240
>gi|358345870|ref|XP_003636997.1| Acylamino-acid-releasing enzyme [Medicago truncatula]
gi|355502932|gb|AES84135.1| Acylamino-acid-releasing enzyme [Medicago truncatula]
Length = 637
Score = 38.1 bits (87), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 53/129 (41%), Gaps = 26/129 (20%)
Query: 76 FKMAEDKEVTSQIHGFHMLINDLKNENI-------------ILPESFMTI--------DQ 114
++M E K + Q+ F+ + NDL N ++ LP SF ++
Sbjct: 377 YQMVESKPIMEQLTEFNKITNDLANIDVNLEDEDKALHLLCALPRSFENFKDTMLYGKEE 436
Query: 115 LEKAKEI----TSKANIVKNEAHPSKNQKPNKKFFKNKKTTFKKKKGN-CYVCGKPGHFA 169
L K KE+ + + V E ++ +KKF + K N C++C GHF
Sbjct: 437 LTKFKELKVDDSGEGLNVSRERIDNRGNGKDKKFRSKSMSKGGGDKTNKCFICHTSGHFK 496
Query: 170 NKCRYRKGD 178
C R+G+
Sbjct: 497 KNCPERRGN 505
>gi|340616009|ref|YP_004732983.1| polyprotein [Grapevine vein-clearing virus]
Length = 1224
Score = 38.1 bits (87), Expect = 2.6, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 121 ITSKANIVKNEAHPSKNQKPNKKFFKNKKTTFKKKKGNCYVCGKPGHFANKCRYRKGDHK 180
+ K + K++ + K + K KNK + +K CY+CG GH+A +C K +
Sbjct: 869 VKKKYGLRKSKTYKGKPHDSHVKVIKNKYKGAQGRKCKCYLCGIEGHYAREC--PKKHVR 926
Query: 181 PPKANLVDG 189
P +A +G
Sbjct: 927 PERAAYFEG 935
>gi|326675746|ref|XP_003200420.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1391
Score = 37.7 bits (86), Expect = 2.7, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 19/33 (57%)
Query: 156 KGNCYVCGKPGHFANKCRYRKGDHKPPKANLVD 188
+G C+ CGKPGHFA C + GD LVD
Sbjct: 288 QGLCFYCGKPGHFAVACSLKFGDSFNSALALVD 320
>gi|308456407|ref|XP_003090646.1| hypothetical protein CRE_09882 [Caenorhabditis remanei]
gi|308262093|gb|EFP06046.1| hypothetical protein CRE_09882 [Caenorhabditis remanei]
Length = 1305
Score = 37.7 bits (86), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 81/211 (38%), Gaps = 48/211 (22%)
Query: 1 MNLAEFLTE---PPPDSDSENYEVLLQNWIKANKVCRSTILSTLSNE--LYDVYSQHKFA 55
MNL T+ PP + S A+ S +++T+S+ ++ + +
Sbjct: 25 MNLMTIFTQNQTPPAAASSTTV---------ASTFDSSKLMNTISSRIPMFTYVPEEEKT 75
Query: 56 YEIWAQLRKKYIIEDAGAQNFKMAEDKEVTSQIHGFHMLINDLKNENIILPESFMTIDQL 115
+E+W R K I+ GAQ +A+D + + + D++ + + E I L
Sbjct: 76 FEVWFS-RYKEIVTKDGAQ---LADDTKTRVILDSSY---QDIRTRALQVLEQKPRITLL 128
Query: 116 EKAKEITSKANI-VKNEAHPSKNQKPNKKFFK-------NKKTTFKKKKGNCYVCG---- 163
E E+ +I ++A NQ P + + N+ T K+ CY CG
Sbjct: 129 EMEAEVKRGLDIRADSKAVAPSNQSPEVQAVQKKPQNQHNQNKTEKQPPSPCYRCGGNHW 188
Query: 164 ---------------KPGHFANKCRYRKGDH 179
KPGH A CR + DH
Sbjct: 189 SKDCKYQTATCRTCNKPGHIAKSCRSKPRDH 219
>gi|339258798|ref|XP_003369585.1| zinc knuckle protein [Trichinella spiralis]
gi|316966156|gb|EFV50774.1| zinc knuckle protein [Trichinella spiralis]
Length = 183
Score = 37.7 bits (86), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 143 KFFKNKKTTFKKKKGNCYVCGKPGHFANKCRYRKGDHKPPKAN 185
K + ++ +K G C+ C KPGH A +C R GD KP N
Sbjct: 133 KAARGQRRALVRKAGLCFHCLKPGHVAKEC-GRGGDEKPKNGN 174
>gi|145520835|ref|XP_001446273.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124413750|emb|CAK78876.1| unnamed protein product [Paramecium tetraurelia]
Length = 160
Score = 37.7 bits (86), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/21 (66%), Positives = 15/21 (71%)
Query: 153 KKKKGNCYVCGKPGHFANKCR 173
KKK G CY CG+ GHFA CR
Sbjct: 83 KKKDGECYQCGRIGHFARNCR 103
>gi|96980851|ref|YP_610965.1| hypothetical protein DMV_gp3 [Dracaena mottle virus]
gi|92430216|gb|ABE77344.1| hypothetical protein [Dracaena mottle virus]
Length = 1916
Score = 37.7 bits (86), Expect = 3.0, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 124 KANIVKNEAHPSKNQKPNKKFFKNKKTTFKKKKGNCYVCGKPGHFANKCRYRKGD 178
K + K + + K + + KNK + K CY+CG+ GHFA +CR +G+
Sbjct: 815 KLGLRKAKNYRGKPHDTHVRLVKNKDKG-RTTKCRCYICGQEGHFARECRNGRGN 868
>gi|412986814|emb|CCO15240.1| predicted protein [Bathycoccus prasinos]
Length = 773
Score = 37.7 bits (86), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/15 (86%), Positives = 14/15 (93%)
Query: 158 NCYVCGKPGHFANKC 172
NCY CG+PGHFANKC
Sbjct: 712 NCYKCGEPGHFANKC 726
Score = 36.6 bits (83), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/16 (75%), Positives = 15/16 (93%)
Query: 157 GNCYVCGKPGHFANKC 172
GNCY CG+PGH+A+KC
Sbjct: 665 GNCYKCGEPGHWASKC 680
>gi|359493351|ref|XP_002277841.2| PREDICTED: uncharacterized protein LOC100251634 [Vitis vinifera]
Length = 2816
Score = 37.7 bits (86), Expect = 3.1, Method: Composition-based stats.
Identities = 27/113 (23%), Positives = 55/113 (48%), Gaps = 19/113 (16%)
Query: 5 EFLTEPP--PDSDSENYEVLLQNWIKANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQL 62
+++TE P++ + Y + WI N + S ++++++ ++ + + A EIW
Sbjct: 2114 DYITEASAAPETTASTY----KKWIAENNMVMSWLVNSMTADIGENFLSFDTAKEIW--- 2166
Query: 63 RKKYIIEDAGAQNFKMAEDKEVTSQIHGFHMLINDLKNENIILPESFMTIDQL 115
D + F DKE TS+I +++DL+ N+ + E F T+ +L
Sbjct: 2167 -------DTAKETF---SDKENTSEIIQIEGILHDLRQGNLTVTEYFNTLTRL 2209
>gi|3929296|gb|AAC79860.1| P194 [Rice tungro bacilliform virus]
Length = 678
Score = 37.7 bits (86), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 154 KKKGNCYVCGKPGHFANKCRYRKGDHKPPKANLVDGED-IIVAVVVTQENM 203
KKK CY+C H AN+C R + +A+L+DG D IV++ E++
Sbjct: 380 KKKCRCYICQDENHLANRCPRRYTNQ--ARASLIDGLDEDIVSIASDDEDI 428
>gi|367020594|ref|XP_003659582.1| hypothetical protein MYCTH_2123217 [Myceliophthora thermophila ATCC
42464]
gi|347006849|gb|AEO54337.1| hypothetical protein MYCTH_2123217 [Myceliophthora thermophila ATCC
42464]
Length = 165
Score = 37.7 bits (86), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 148 KKTTFKKKKGNCYVCGKPGHFANKCRYRKGDHKP-PKANLVD----GEDIIVAVVVTQEN 202
KKTT K CY CGK GH+ +CR K + KP P + D +D+I + E+
Sbjct: 35 KKTTQDKSNVTCYNCGKKGHYKRECRSPKKEWKPVPGKEIADIDETTKDVIEVAATSYED 94
>gi|342365297|gb|AEL30040.1| capsid protein [Dahlia common mosaic virus]
Length = 505
Score = 37.7 bits (86), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Query: 134 PSKNQKPNKKFFKNKKTTFKKKKGNCYVCGKPGHFANKCRYRKGDH 179
P NQKP K+ K KK C++C + GH+AN+C R+ +
Sbjct: 421 PKGNQKPKTKYCPQGK-----KKCRCWICAEEGHYANECPSRQTNQ 461
>gi|158830697|gb|ABW81762.1| coat protein [Dahlia mosaic virus-Holland]
Length = 505
Score = 37.7 bits (86), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Query: 134 PSKNQKPNKKFFKNKKTTFKKKKGNCYVCGKPGHFANKCRYRKGDH 179
P NQKP K+ K KK C++C + GH+AN+C R+ +
Sbjct: 421 PKGNQKPKTKYCPQGK-----KKCRCWICAEEGHYANECPSRQTNQ 461
>gi|110289151|gb|ABG66100.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 172
Score = 37.7 bits (86), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 18/89 (20%)
Query: 109 FMTIDQLEKA--KEITSKANIVKNEA---HPSKNQKPNKKFFKNKKTTFK---------- 153
++D EKA K+ SK N ++ A H ++N+ K +K ++TT
Sbjct: 16 LASLDVEEKAPEKDAASKGNGGQSSANVVHKAQNKCKGK--YKAQQTTNFKKQKKKNNKP 73
Query: 154 -KKKGNCYVCGKPGHFANKCRYRKGDHKP 181
+ + C+VCG+PGH A KC RKG P
Sbjct: 74 NQDERTCFVCGQPGHLARKCPQRKGMKAP 102
>gi|325187923|emb|CCA22467.1| Mitochondrial Carrier (MC) Family putative [Albugo laibachii Nc14]
Length = 559
Score = 37.7 bits (86), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 18/93 (19%)
Query: 110 MTIDQLEKAKEITSKANIVKNEAHPSKNQKPN--KKFFKNKKTTFK----KKKGNCYVCG 163
M D +A+E+ A ++ ++ S N P K++ +++ + + KK+ NCY CG
Sbjct: 256 MREDTRRQAEELCHFAQLMDSD---SINNAPREAKRWMRDRISAIRETKPKKEINCYSCG 312
Query: 164 KPGHFANKCRYRKGDHKPPKANLVDGEDIIVAV 196
K GH +CR + N + EDI++ +
Sbjct: 313 KSGHMKRECRNK---------NSSNNEDIVLGI 336
>gi|325187922|emb|CCA22466.1| Mitochondrial Carrier (MC) Family putative [Albugo laibachii Nc14]
Length = 549
Score = 37.7 bits (86), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 18/93 (19%)
Query: 110 MTIDQLEKAKEITSKANIVKNEAHPSKNQKPN--KKFFKNKKTTFK----KKKGNCYVCG 163
M D +A+E+ A ++ ++ S N P K++ +++ + + KK+ NCY CG
Sbjct: 256 MREDTRRQAEELCHFAQLMDSD---SINNAPREAKRWMRDRISAIRETKPKKEINCYSCG 312
Query: 164 KPGHFANKCRYRKGDHKPPKANLVDGEDIIVAV 196
K GH +CR + N + EDI++ +
Sbjct: 313 KSGHMKRECRNK---------NSSNNEDIVLGI 336
>gi|242399795|ref|YP_002995220.1| leucine aminopeptidase [Thermococcus sibiricus MM 739]
gi|242266189|gb|ACS90871.1| Probable leucine aminopeptidase [Thermococcus sibiricus MM 739]
Length = 561
Score = 37.7 bits (86), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 42/90 (46%), Gaps = 13/90 (14%)
Query: 52 HKFAYEIWAQLRKKYII---------EDAGAQNFKMAEDKEVTSQIHGFHMLINDLKNEN 102
H+F YE W +KK +I +D G + K+ ED++ +H ML L E
Sbjct: 470 HEFKYEPWLDWKKKGLISPRSIMQIDKDKGEKLTKILEDRKTAILLHELLMLGEMLPKEE 529
Query: 103 --IILPESFMTIDQ--LEKAKEITSKANIV 128
L E F ID+ LEKA EI NI+
Sbjct: 530 AYTALKEEFGDIDREKLEKALEILKSLNII 559
>gi|9294121|dbj|BAB01972.1| copia-like retrotransposable element [Arabidopsis thaliana]
Length = 1499
Score = 37.4 bits (85), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Query: 145 FKNKKTTFKKKKGN----CYVCGKPGHFANKCRYRKGDH 179
F+ K + ++ G+ CYVC K GH A C+ RKG+
Sbjct: 250 FRKKSESISQRGGSYERRCYVCDKQGHIARDCKLRKGER 288
>gi|374094812|gb|AEY84739.1| gag protein [Small ruminant lentivirus]
Length = 442
Score = 37.4 bits (85), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 148 KKTTFKKKKGNCYVCGKPGHFANKCR 173
+KT ++K CY CGKPGH A +CR
Sbjct: 376 RKTRDQEKGQKCYNCGKPGHLARQCR 401
>gi|308469951|ref|XP_003097211.1| hypothetical protein CRE_19883 [Caenorhabditis remanei]
gi|308240431|gb|EFO84383.1| hypothetical protein CRE_19883 [Caenorhabditis remanei]
Length = 661
Score = 37.4 bits (85), Expect = 3.5, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 145 FKNKKTTFKKKKGNCYVCGKPGHFANKCRYRKGD 178
F+ ++ F + CY CG+PGHF+ +C RK +
Sbjct: 287 FRGRREHFGNRVLTCYACGEPGHFSYECPKRKSE 320
>gi|328698665|ref|XP_001947043.2| PREDICTED: cGMP-dependent protein kinase, isozyme 1-like
[Acyrthosiphon pisum]
Length = 718
Score = 37.4 bits (85), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 11/112 (9%)
Query: 24 QNWIKANKVCRSTILSTLSNELYDVYSQHKFAY---------EIWAQLRKKYIIEDAGAQ 74
Q + K + S +LY Y ++ Y E+W LR + +D A
Sbjct: 450 QEHVYNEKTILESCTSPFIGKLYQTYKDSRYVYMLMEACLGGEVWTLLRDRRCFDDNAA- 508
Query: 75 NFKMAEDKEVTSQIHGFHMLINDLKNENIILP-ESFMTIDQLEKAKEITSKA 125
F +A E +HG ++ DLK EN++L + F+ + AK + +
Sbjct: 509 CFVIACVVEALDYLHGVDVVYRDLKPENLLLDRQGFVKLVDFGFAKRLQPRG 560
>gi|148839272|ref|YP_001293182.1| hypothetical protein LBBV_gp3 [Lucky bamboo bacilliform virus]
gi|148645292|gb|ABR01170.1| hypothetical protein [Lucky bamboo bacilliform virus]
Length = 1913
Score = 37.4 bits (85), Expect = 3.7, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 124 KANIVKNEAHPSKNQKPNKKFFKNKKTTFKKKKGNCYVCGKPGHFANKCRYRKGD 178
K + K + + K + + KNK + K CY+CG+ GHFA +CR +G+
Sbjct: 813 KFGLRKAKNYRGKPHDTHVRLVKNKDKG-RTTKCRCYICGQEGHFARECRNGRGN 866
>gi|53749347|gb|AAU90206.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1256
Score = 37.4 bits (85), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 59/151 (39%), Gaps = 50/151 (33%)
Query: 74 QNFKMAEDKEVTSQIHGFHMLINDLKNENIILPESFM----------------------- 110
N+KMA+++ V Q H + +L+ +LP+ F+
Sbjct: 213 HNYKMADNRSVVEQAHEIQTMAKELELLKCVLPDKFLAGCIIAKLPPSWRGFGTALKHKR 272
Query: 111 ----------TIDQLEKAKE--ITSKAN---IVKNEAHPSKNQKPNKKFFKNKKTTFK-- 153
++D EKA+E SK + N H ++N+ K +K ++TT
Sbjct: 273 QEYSVEGWIASLDIEEKAQEKDAASKGDGGQSTANVVHKAQNKSKGK--YKAQQTTNFKK 330
Query: 154 --------KKKGNCYVCGKPGHFANKCRYRK 176
+ + C+VC +P H A KC RK
Sbjct: 331 KNNNNNSNQDERTCFVCDQPDHLARKCPQRK 361
>gi|322694702|gb|EFY86525.1| hypothetical protein MAC_07468 [Metarhizium acridum CQMa 102]
Length = 206
Score = 37.4 bits (85), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/21 (71%), Positives = 16/21 (76%)
Query: 153 KKKKGNCYVCGKPGHFANKCR 173
K+K CY CGK GHFANKCR
Sbjct: 64 KEKGKTCYNCGKTGHFANKCR 84
>gi|145552836|ref|XP_001462093.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124429931|emb|CAK94720.1| unnamed protein product [Paramecium tetraurelia]
Length = 161
Score = 37.4 bits (85), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/21 (66%), Positives = 15/21 (71%)
Query: 153 KKKKGNCYVCGKPGHFANKCR 173
KKK G CY CG+ GHFA CR
Sbjct: 83 KKKDGECYKCGRIGHFARNCR 103
>gi|155676231|gb|ABU25376.1| gag protein [Small ruminant lentivirus]
Length = 228
Score = 37.4 bits (85), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 159 CYVCGKPGHFANKCRYRKGDHKPPKANLVDG 189
C+ CGK GH CR RKG P+ N+ G
Sbjct: 198 CHFCGKKGHVQKDCRQRKGKQGGPQGNIKRG 228
>gi|403420433|emb|CCM07133.1| predicted protein [Fibroporia radiculosa]
Length = 309
Score = 37.4 bits (85), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 9/82 (10%)
Query: 110 MTIDQLEKAKEITSK-ANIVKNEAHPSKNQKPNKKFFKNKKTTFKKKKGNCYVCGKPGHF 168
M +D K K+ SK ++ + P K Q+ N + + KKG CY+CGKP H+
Sbjct: 132 MEVDNTSKQKQSGSKPTQQQRSTSDPRKRQEGNALSMQEAQ-----KKGVCYICGKPRHW 186
Query: 169 ANKCRYRK-GDH--KPPKANLV 187
C +K GD +P AN
Sbjct: 187 GKLCPSKKTGDSAARPAAANTT 208
>gi|328780171|ref|XP_394420.4| PREDICTED: LOW QUALITY PROTEIN: ATP-binding cassette sub-family C
member 8 [Apis mellifera]
Length = 2481
Score = 37.4 bits (85), Expect = 3.8, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 10/71 (14%)
Query: 44 ELYDVYSQHKFAY---------EIWAQLRKKYIIEDAGAQNFKMAEDKEVTSQIHGFHML 94
+LY Y K+ Y ++W L+++ +DA AQ F + E +H +++
Sbjct: 2235 KLYQTYKDRKYVYFLMEVCLGGDVWTTLQRRRFFDDATAQ-FMVGCVVEALDHLHSMNIV 2293
Query: 95 INDLKNENIIL 105
DLK EN++L
Sbjct: 2294 YRDLKPENLML 2304
>gi|4826604|gb|AAD30198.1|AF113832_3 polyprotein P194 [Rice tungro bacilliform virus]
Length = 1677
Score = 37.4 bits (85), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 154 KKKGNCYVCGKPGHFANKCRYRKGDHKPPKANLVDGED-IIVAVVVTQENM 203
KKK CY+C H AN+C R + +A+L+DG D IV++ E++
Sbjct: 769 KKKCRCYICQDENHLANRCPRRYTNQ--ARASLIDGLDEDIVSIASDDEDI 817
>gi|9630633|ref|NP_056762.1| hypothetical protein [Rice tungro bacilliform virus]
gi|130653|sp|P27502.1|POL_RTBVP RecName: Full=Polyprotein P3; AltName: Full=P194 protein; Contains:
RecName: Full=Putative movement protein; Short=MP;
Contains: RecName: Full=Capsid protein; AltName:
Full=Coat protein; Short=CP; Contains: RecName:
Full=Protease; Short=PR; Contains: RecName: Full=Reverse
transcriptase/Ribonuclease H; Short=RT; AltName:
Full=p55; Flags: Precursor
gi|61913|emb|CAA40997.1| ORF P194 [Rice tungro bacilliform virus]
Length = 1675
Score = 37.4 bits (85), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 154 KKKGNCYVCGKPGHFANKCRYRKGDHKPPKANLVDGED-IIVAVVVTQENM 203
KKK CY+C H AN+C R + +A+L+DG D IV++ E++
Sbjct: 769 KKKCRCYICQDENHLANRCPRRYTNQ--ARASLIDGLDEDIVSIASDDEDI 817
>gi|291224621|ref|XP_002732301.1| PREDICTED: polyprotein-like [Saccoglossus kowalevskii]
Length = 1564
Score = 37.4 bits (85), Expect = 3.8, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 127 IVKNEAHPSKNQKPNKKFFKNKKTTFKKKKGNCYVCGKPGHFANKCRYR 175
IVK+ P + + T ++ G CYVCG+ GH A KC R
Sbjct: 301 IVKDATVPVSGENAQTFEPTPRDKTMRRSPGQCYVCGELGHLARKCPTR 349
>gi|222574|dbj|BAA01607.1| 194K polypeptide [Rice tungro bacilliform virus]
gi|229052|prf||1817177A capsid protein
Length = 1675
Score = 37.4 bits (85), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 154 KKKGNCYVCGKPGHFANKCRYRKGDHKPPKANLVDGED-IIVAVVVTQENM 203
KKK CY+C H AN+C R + +A+L+DG D IV++ E++
Sbjct: 769 KKKCRCYICQDENHLANRCPRRYTNQ--ARASLIDGLDEDIVSIASDDEDI 817
>gi|4826599|gb|AAD30194.1|AF113831_3 polyprotein P194 [Rice tungro bacilliform virus]
Length = 1675
Score = 37.4 bits (85), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 154 KKKGNCYVCGKPGHFANKCRYRKGDHKPPKANLVDGED-IIVAVVVTQENM 203
KKK CY+C H AN+C R + +A+L+DG D IV++ E++
Sbjct: 769 KKKCRCYICQDENHLANRCPRRYTNQ--ARASLIDGLDEDIVSIASDDEDI 817
>gi|333967|gb|AAB03094.1| ORF3 [Rice tungro bacilliform virus]
Length = 1675
Score = 37.4 bits (85), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 154 KKKGNCYVCGKPGHFANKCRYRKGDHKPPKANLVDGED-IIVAVVVTQENM 203
KKK CY+C H AN+C R + +A+L+DG D IV++ E++
Sbjct: 769 KKKCRCYICQDENHLANRCPRRYTNQ--ARASLIDGLDEDIVSIASDDEDI 817
>gi|145483577|ref|XP_001427811.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124394894|emb|CAK60413.1| unnamed protein product [Paramecium tetraurelia]
Length = 161
Score = 37.4 bits (85), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/21 (66%), Positives = 15/21 (71%)
Query: 153 KKKKGNCYVCGKPGHFANKCR 173
KKK G CY CG+ GHFA CR
Sbjct: 83 KKKDGECYKCGRIGHFARNCR 103
>gi|4826594|gb|AAD30190.1|AF113830_3 polyprotein P194 [Rice tungro bacilliform virus]
Length = 1677
Score = 37.4 bits (85), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 154 KKKGNCYVCGKPGHFANKCRYRKGDHKPPKANLVDGED-IIVAVVVTQENM 203
KKK CY+C H AN+C R + +A+L+DG D IV++ E++
Sbjct: 769 KKKCRCYICQDENHLANRCPRRYTNQ--ARASLIDGLDEDIVSIASDDEDI 817
>gi|326667605|ref|XP_003198633.1| PREDICTED: retrotransposable element Tf2 155 kDa protein type
1-like [Danio rerio]
Length = 1388
Score = 37.4 bits (85), Expect = 4.0, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 19/33 (57%)
Query: 156 KGNCYVCGKPGHFANKCRYRKGDHKPPKANLVD 188
+G C+ CGKPGHFA C + GD LVD
Sbjct: 288 QGLCFYCGKPGHFAVACPLKFGDSFNSALALVD 320
>gi|18026842|gb|AAL55651.1|AF220561_3 P194 [Rice tungro bacilliform virus]
Length = 1677
Score = 37.4 bits (85), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 154 KKKGNCYVCGKPGHFANKCRYRKGDHKPPKANLVDGED-IIVAVVVTQENM 203
KKK CY+C H AN+C R + +A+L+DG D IV++ E++
Sbjct: 772 KKKCRCYICQDENHLANRCPRRYTNQ--ARASLIDGLDEDIVSIASDDEDI 820
>gi|147821435|emb|CAN74578.1| hypothetical protein VITISV_009111 [Vitis vinifera]
Length = 318
Score = 37.4 bits (85), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 159 CYVCGKPGHFANKCRYRKGDH 179
CY CG+PGHFA +CR R G
Sbjct: 212 CYECGEPGHFARECRLRIGSR 232
>gi|322795868|gb|EFZ18547.1| hypothetical protein SINV_80539 [Solenopsis invicta]
Length = 726
Score = 37.4 bits (85), Expect = 4.1, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 10/71 (14%)
Query: 44 ELYDVYSQHKFAY---------EIWAQLRKKYIIEDAGAQNFKMAEDKEVTSQIHGFHML 94
+LY Y +K+ Y ++W L+++ +DA AQ F + E +H +++
Sbjct: 486 KLYQTYKDNKYVYFLMEVCLGGDVWTTLQRRRYFDDATAQ-FMVGCVVEALDHLHSLNIV 544
Query: 95 INDLKNENIIL 105
DLK EN++L
Sbjct: 545 YRDLKPENLML 555
>gi|440640226|gb|ELR10145.1| hypothetical protein GMDG_08725 [Geomyces destructans 20631-21]
Length = 187
Score = 37.4 bits (85), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 149 KTTFKKKKGNCYVCGKPGHFANKC 172
+T GNC CGKPGHF +KC
Sbjct: 144 RTAVPAPSGNCLKCGKPGHFQDKC 167
>gi|56266245|emb|CAE81279.1| polyprotein [Cacao swollen shoot virus]
Length = 1816
Score = 37.4 bits (85), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 122 TSKANIVKNEAHPSKNQKPNKKFFKNKKTTFKKKKGNCYVCGKPGHFANKCRYRKGDHKP 181
T K + K++ + K + + K +K + KK CY+CG GHFA +C K D K
Sbjct: 756 TPKYGMRKSKTYKGKPHASHARIEK-RKHLIRNKKCKCYLCGDEGHFARECPNNKRDVKR 814
Query: 182 ----PKANLVDGEDII 193
NL +G DI+
Sbjct: 815 VAIFEGINLPEGFDIV 830
>gi|440639095|gb|ELR09014.1| hypothetical protein GMDG_00632 [Geomyces destructans 20631-21]
Length = 187
Score = 37.4 bits (85), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 149 KTTFKKKKGNCYVCGKPGHFANKC 172
KT G C+ CGKPGHF +KC
Sbjct: 126 KTRVPASSGKCFKCGKPGHFQDKC 149
>gi|380030303|ref|XP_003698789.1| PREDICTED: LOW QUALITY PROTEIN: ATP-binding cassette sub-family C
member 9-like [Apis florea]
Length = 2486
Score = 37.4 bits (85), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 10/70 (14%)
Query: 45 LYDVYSQHKFAY---------EIWAQLRKKYIIEDAGAQNFKMAEDKEVTSQIHGFHMLI 95
LY Y K+ Y ++W L+++ +DA AQ F + E +H +++
Sbjct: 2241 LYQTYKDSKYVYFLMEVCLGGDVWTTLQRRRFFDDATAQ-FMVGCVVEALDHLHSMNIVY 2299
Query: 96 NDLKNENIIL 105
DLK EN++L
Sbjct: 2300 RDLKPENLML 2309
>gi|34534936|dbj|BAC87158.1| unnamed protein product [Homo sapiens]
Length = 483
Score = 37.4 bits (85), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Query: 149 KTTFKKKKGNCYVCGKPGHFANKCRYRKGDHKP 181
K TF GNCY CGKPGH+ C Y KP
Sbjct: 430 KDTFP---GNCYQCGKPGHWKANCPYGPRGEKP 459
>gi|339237699|ref|XP_003380404.1| adenylosuccinate lyase [Trichinella spiralis]
gi|316976754|gb|EFV59980.1| adenylosuccinate lyase [Trichinella spiralis]
Length = 476
Score = 37.4 bits (85), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 85 TSQIHGFHMLINDLKNENIILPESFMTIDQL 115
T IHGF ++D N ++LPESF+T D L
Sbjct: 267 TEAIHGFERTLDDSSNRRLVLPESFLTADAL 297
>gi|38346260|emb|CAE02082.2| OSJNBa0074B10.10 [Oryza sativa Japonica Group]
Length = 720
Score = 37.4 bits (85), Expect = 4.5, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Query: 130 NEAHPSKNQKPNKKFFKNKKTTFKKKKGN----CYVCGKPGHFANKC-RYRKGDHKPPKA 184
N + +NQ P ++ + K+++G+ C+ CG+PGH+A+KC + R+ P ++
Sbjct: 228 NAGNNIRNQAPRPVAVPTQQQSAKREQGSKPVVCFNCGEPGHYADKCPKPRRVKVVPTQS 287
Query: 185 N 185
N
Sbjct: 288 N 288
>gi|126542375|gb|ABO16619.1| gag protein [Feline immunodeficiency virus]
Length = 468
Score = 37.0 bits (84), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 5/37 (13%)
Query: 140 PNKKFFKNKKTTFKKKKGNCYVCGKPGHFANKCRYRK 176
P K +N K++FK CY CGKPGH A CR K
Sbjct: 381 PWKTKNRNTKSSFK-----CYNCGKPGHLARACRAPK 412
>gi|428305093|ref|YP_007141918.1| DGQHR domain-containing protein [Crinalium epipsammum PCC 9333]
gi|428246628|gb|AFZ12408.1| DGQHR domain protein [Crinalium epipsammum PCC 9333]
Length = 529
Score = 37.0 bits (84), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 20/98 (20%)
Query: 25 NWIKANKVCRSTILSTLS--NELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQNFKMAEDK 82
NW A +ST+L+TL E+ + Y QHKF + W +L KK +I ED+
Sbjct: 307 NWDSATVAAKSTVLTTLQALKEMSERYLQHKFPH--W-KLEKKGLIP-------MRPEDE 356
Query: 83 EVTSQIHGFHMLINDLKNENIILPESFMTIDQLEKAKE 120
E+ I F +L ++L N + +LE+ +E
Sbjct: 357 ELEVGIKEFKLLFDNLTN--------LFSFQRLERGEE 386
>gi|119194235|ref|XP_001247721.1| hypothetical protein CIMG_01492 [Coccidioides immitis RS]
Length = 409
Score = 37.0 bits (84), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 158 NCYVCGKPGHFANKCRYRK 176
NCY+CGKPGH A C+ K
Sbjct: 149 NCYICGKPGHLAKFCKSNK 167
>gi|194871990|ref|YP_002117531.1| ORF3 [Cycad leaf necrosis virus]
gi|194399161|gb|ACF60613.1| ORF3 [Cycad leaf necrosis virus]
Length = 1916
Score = 37.0 bits (84), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 139 KPNKKFFKNKKTTF-KKKKGNCYVCGKPGHFANKCR 173
KP+K + +K+ + + KK CY CG+ GHFA C+
Sbjct: 809 KPHKTHVRIEKSKYLRSKKCKCYACGEEGHFAKDCK 844
>gi|156052543|ref|XP_001592198.1| hypothetical protein SS1G_06437 [Sclerotinia sclerotiorum 1980]
gi|154704217|gb|EDO03956.1| hypothetical protein SS1G_06437 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 1326
Score = 37.0 bits (84), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 14/66 (21%)
Query: 129 KNEAHPSKNQKPNKK------FFKNK----KTTFKKKKGNCYVCGKPGHFANKCRYRK-- 176
KNE P +N++ ++ FKNK + ++K C+ CGKPGH A CR ++
Sbjct: 244 KNEGRPRENRQSYREPMQLDATFKNKLPKEEVERRRKDKLCFECGKPGHRARDCRSKRSS 303
Query: 177 --GDHK 180
G HK
Sbjct: 304 GGGYHK 309
>gi|119190225|ref|XP_001245719.1| hypothetical protein CIMG_05160 [Coccidioides immitis RS]
Length = 79
Score = 37.0 bits (84), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 4/44 (9%)
Query: 158 NCYVCGKPGHFANKCRYRKGDHKP--PKANLVDGEDIIVAVVVT 199
NCY+CGKPGH A C+ K + KP PK + G+D A++ T
Sbjct: 16 NCYICGKPGHLAKFCKSNK-NLKPNEPKED-SKGKDKKTAIIAT 57
>gi|405961574|gb|EKC27358.1| hypothetical protein CGI_10003587 [Crassostrea gigas]
Length = 328
Score = 37.0 bits (84), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 149 KTTFKKKKGNCYVCGKPGHFANKC 172
KTT K G+CY CG+PGH++ C
Sbjct: 188 KTTQGKNPGSCYTCGEPGHYSPDC 211
>gi|56266239|emb|CAE76628.1| polyprotein [Cacao swollen shoot virus]
Length = 1847
Score = 37.0 bits (84), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 148 KKTTFKKKKGNCYVCGKPGHFANKCRYRKGDHKP----PKANLVDGEDII 193
+K + KK CY+CG GHFA +C K D K NL +G DI+
Sbjct: 782 RKHLIRNKKCKCYLCGDEGHFARECPNNKRDVKRVAIFEGINLPEGFDIV 831
>gi|156030428|ref|XP_001584544.1| hypothetical protein SS1G_14517 [Sclerotinia sclerotiorum 1980]
gi|154700891|gb|EDO00630.1| hypothetical protein SS1G_14517 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 1413
Score = 37.0 bits (84), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 14/66 (21%)
Query: 129 KNEAHPSKNQKPNKK------FFKNK----KTTFKKKKGNCYVCGKPGHFANKCRYRK-- 176
KNE P +N++ K FKNK + ++K C+ CGKPGH A CR ++
Sbjct: 244 KNEGRPRENRQSYGKPMQLDATFKNKLPKEEVERRRKDKLCFECGKPGHRARDCRSKRSS 303
Query: 177 --GDHK 180
G HK
Sbjct: 304 GGGYHK 309
>gi|325187921|emb|CCA22465.1| Mitochondrial Carrier (MC) Family putative [Albugo laibachii Nc14]
Length = 805
Score = 37.0 bits (84), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 18/93 (19%)
Query: 110 MTIDQLEKAKEITSKANIVKNEAHPSKNQKPN--KKFFKNKKTTFK----KKKGNCYVCG 163
M D +A+E+ A ++ ++ S N P K++ +++ + + KK+ NCY CG
Sbjct: 241 MREDTRRQAEELCHFAQLMDSD---SINNAPREAKRWMRDRISAIRETKPKKEINCYSCG 297
Query: 164 KPGHFANKCRYRKGDHKPPKANLVDGEDIIVAV 196
K GH +CR + N + EDI++ +
Sbjct: 298 KSGHMKRECRNK---------NSSNNEDIVLGI 321
>gi|108864151|gb|ABA92101.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 923
Score = 37.0 bits (84), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 8/81 (9%)
Query: 38 LSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAG--------AQNFKMAEDKEVTSQIH 89
L + L +VY A E+W L K+ DA ++KMA+++ V Q H
Sbjct: 23 FDVLGDRLVEVYMHMTDAKELWNALNTKFGCTDASNDLYIMEQFHDYKMADNRSVVEQAH 82
Query: 90 GFHMLINDLKNENIILPESFM 110
+ +L+ +LP+ F+
Sbjct: 83 EIQTMAKELELLKCVLPDKFV 103
>gi|325187924|emb|CCA22468.1| Mitochondrial Carrier (MC) Family putative [Albugo laibachii Nc14]
Length = 820
Score = 37.0 bits (84), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 18/93 (19%)
Query: 110 MTIDQLEKAKEITSKANIVKNEAHPSKNQKPN--KKFFKNKKTTFK----KKKGNCYVCG 163
M D +A+E+ A ++ ++ S N P K++ +++ + + KK+ NCY CG
Sbjct: 256 MREDTRRQAEELCHFAQLMDSD---SINNAPREAKRWMRDRISAIRETKPKKEINCYSCG 312
Query: 164 KPGHFANKCRYRKGDHKPPKANLVDGEDIIVAV 196
K GH +CR + N + EDI++ +
Sbjct: 313 KSGHMKRECRNK---------NSSNNEDIVLGI 336
>gi|3377856|gb|AAC28238.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
19.54) and CCHC-type zinc fingers (Pfam: zf-CCHC.hmm,
score: 12.35) [Arabidopsis thaliana]
gi|7267184|emb|CAB77896.1| putative transposon protein [Arabidopsis thaliana]
Length = 1104
Score = 37.0 bits (84), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 58/154 (37%), Gaps = 29/154 (18%)
Query: 51 QH-KFAYEIWAQLRKKY--------IIEDAGAQNFKMAEDKEVTSQIHGFHMLINDLKNE 101
QH K A EIWA L K + I +FKM + + + F ++ D ++
Sbjct: 97 QHCKTAAEIWATLNKLFMETSLLNRIYTQLKLYSFKMVDTLSIDQNVDEFLRILADCLDQ 156
Query: 102 NIILPESFMTI------DQLEKAKEI-------------TSKANIVKNEAHPSKNQKPNK 142
N+ LP S++ + D + AK + S A + P + +
Sbjct: 157 NL-LPSSYIQLKHTLNTDVVSSAKSLERKLSETQESNKNVSMALYTTDRGRPQVRNQDKQ 215
Query: 143 KFFKNKKTTFKKKKGNCYVCGKPGHFANKCRYRK 176
KN+ + K + C+ C K H C RK
Sbjct: 216 GQGKNRGRSNSKTRVTCWFCKKEAHVKRDCFARK 249
>gi|242079161|ref|XP_002444349.1| hypothetical protein SORBIDRAFT_07g020540 [Sorghum bicolor]
gi|241940699|gb|EES13844.1| hypothetical protein SORBIDRAFT_07g020540 [Sorghum bicolor]
Length = 235
Score = 37.0 bits (84), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 26 WIKANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKY 66
W + + VCR IL+ LS+ L Y++H +W + + Y
Sbjct: 61 WARDDAVCRGHILAALSDRLLPDYARHGTGRAVWQAVARTY 101
>gi|56266252|emb|CAE81285.1| polyprotein [Cacao swollen shoot virus]
Length = 1770
Score = 37.0 bits (84), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 148 KKTTFKKKKGNCYVCGKPGHFANKCRYRKGDHKP----PKANLVDGEDII 193
+K + KK CY+CG GHFA +C K D K NL +G DI+
Sbjct: 705 RKHLIRNKKCKCYLCGDEGHFARECPNNKRDVKRVAIFEGINLPEGFDIV 754
>gi|147768962|emb|CAN73624.1| hypothetical protein VITISV_042460 [Vitis vinifera]
Length = 1287
Score = 37.0 bits (84), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 50/106 (47%), Gaps = 17/106 (16%)
Query: 12 PDSDSENYEVLLQNWIKANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDA 71
P++ Y + WI N + S ++++++ ++ + + A EIW D
Sbjct: 76 PETTXSTY----KKWIAENNMVMSWLVNSMTADIGENFLSFDTAKEIW----------DT 121
Query: 72 GAQNFKMAEDKEVTSQIHGFHMLINDLKNENIILPESFMTIDQLEK 117
+ F DKE TS+I +++DL+ N+ + E F T+ +L +
Sbjct: 122 AKETF---SDKENTSEIIQIEGILHDLRQGNLTVTEYFNTLTRLXR 164
>gi|119181141|ref|XP_001241813.1| hypothetical protein CIMG_05709 [Coccidioides immitis RS]
Length = 1139
Score = 37.0 bits (84), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 90 GFHMLINDLKNENIILPESFMTIDQLEKAKEITSKANIVKNEAHPSKNQKPNKKFFKNKK 149
G ++L DL+ +L + I + + K ++K N P K+ K +K
Sbjct: 6 GMNLLEKDLEG---LLKDILHQIPKKDLKKGGSTKPNTNATSLDPQKSYKNTNSESNPEK 62
Query: 150 TTFKKKKGNCYVCGKPGHFANKCRYRK 176
++ + NCY+CGKPGH A C+ K
Sbjct: 63 SSLQN--WNCYICGKPGHLAKFCKSNK 87
>gi|356526819|ref|XP_003532014.1| PREDICTED: serine/arginine-rich splicing factor 7-like [Glycine
max]
Length = 176
Score = 37.0 bits (84), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/19 (68%), Positives = 15/19 (78%)
Query: 159 CYVCGKPGHFANKCRYRKG 177
CY CG+PGHFA +CR R G
Sbjct: 89 CYECGEPGHFARECRLRIG 107
>gi|303321121|ref|XP_003070555.1| copia-like retrotransposon family protein [Coccidioides posadasii
C735 delta SOWgp]
gi|240110251|gb|EER28410.1| copia-like retrotransposon family protein [Coccidioides posadasii
C735 delta SOWgp]
Length = 1538
Score = 37.0 bits (84), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 104 ILPESFMTIDQLEKAKEITSKANIVKNEAHPSKNQKPNKKFFKNKKTTFKKKKGNCYVCG 163
+L + I + ++ K ++K N + P K+ K +K++ + NCY+CG
Sbjct: 337 LLKDILHRIPKKDQKKGGSTKPNTNATSSDPQKSYKNTNSESNPEKSSLQN--WNCYICG 394
Query: 164 KPGHFANKCRYRK 176
KPGH A C+ K
Sbjct: 395 KPGHLAKFCKSNK 407
>gi|119172732|ref|XP_001238927.1| hypothetical protein CIMG_09949 [Coccidioides immitis RS]
Length = 670
Score = 37.0 bits (84), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/19 (68%), Positives = 13/19 (68%)
Query: 158 NCYVCGKPGHFANKCRYRK 176
NCY CGKPGH A CR K
Sbjct: 62 NCYTCGKPGHLAKFCRSNK 80
>gi|119184168|ref|XP_001243016.1| hypothetical protein CIMG_06912 [Coccidioides immitis RS]
Length = 972
Score = 37.0 bits (84), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 158 NCYVCGKPGHFANKCRYRKGDHKPPK 183
NCY+CGKPGH A C+ K + KP K
Sbjct: 133 NCYICGKPGHLAKFCKSNK-NSKPNK 157
>gi|15233246|ref|NP_191094.1| phragmoplastin interacting protein 1 [Arabidopsis thaliana]
gi|7019667|emb|CAB75768.1| putative protein [Arabidopsis thaliana]
gi|332645849|gb|AEE79370.1| phragmoplastin interacting protein 1 [Arabidopsis thaliana]
Length = 597
Score = 37.0 bits (84), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 130 NEAHPSKNQKPNKKFFKNKKTTFKKKKGNCYVCGKPGHFANKC 172
NE + S N+ N + + T K K+ NCY CG+ GH + C
Sbjct: 452 NETYASTNETYNGGYSASAVGTGKVKRRNCYECGEKGHLSTAC 494
>gi|440792617|gb|ELR13826.1| exoribonuclease, putative [Acanthamoeba castellanii str. Neff]
Length = 1110
Score = 37.0 bits (84), Expect = 5.7, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Query: 144 FFKNKKTTFKKKKGNCYVCGKPGHFANKCRYR---KGDHKPPKA 184
FF ++ + + NC++CG+PGH A+ C+ + KG+ KA
Sbjct: 138 FFILREIVMQANENNCFICGQPGHLASDCQGKAKEKGNDTDTKA 181
>gi|51969240|dbj|BAD43312.1| putative protein [Arabidopsis thaliana]
Length = 597
Score = 37.0 bits (84), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 130 NEAHPSKNQKPNKKFFKNKKTTFKKKKGNCYVCGKPGHFANKC 172
NE + S N+ N + + T K K+ NCY CG+ GH + C
Sbjct: 452 NETYASTNETYNGGYSASAVGTGKVKRRNCYECGEKGHLSTAC 494
>gi|119195305|ref|XP_001248256.1| hypothetical protein CIMG_02027 [Coccidioides immitis RS]
Length = 195
Score = 37.0 bits (84), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/16 (75%), Positives = 12/16 (75%)
Query: 158 NCYVCGKPGHFANKCR 173
NCY CGKPGH A CR
Sbjct: 16 NCYTCGKPGHLAKFCR 31
>gi|119189289|ref|XP_001245251.1| hypothetical protein CIMG_04692 [Coccidioides immitis RS]
Length = 1445
Score = 36.6 bits (83), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 158 NCYVCGKPGHFANKCRYRK 176
NCY+CGKPGH A C+ K
Sbjct: 296 NCYICGKPGHLAKFCKSNK 314
>gi|18026763|gb|AAL55607.1|AF196776_1 phragmoplastin-interacting protein PHIP1 [Arabidopsis thaliana]
Length = 597
Score = 36.6 bits (83), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 130 NEAHPSKNQKPNKKFFKNKKTTFKKKKGNCYVCGKPGHFANKC 172
NE + S N+ N + + T K K+ NCY CG+ GH + C
Sbjct: 452 NETYASTNETYNGGYSASAVGTGKVKRRNCYECGEKGHLSTAC 494
>gi|303319303|ref|XP_003069651.1| copia-like retrotransposon family protein [Coccidioides posadasii
C735 delta SOWgp]
gi|303322555|ref|XP_003071269.1| copia-like retrotransposon family protein [Coccidioides posadasii
C735 delta SOWgp]
gi|240109337|gb|EER27506.1| copia-like retrotransposon family protein [Coccidioides posadasii
C735 delta SOWgp]
gi|240110971|gb|EER29124.1| copia-like retrotransposon family protein [Coccidioides posadasii
C735 delta SOWgp]
Length = 1538
Score = 36.6 bits (83), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 158 NCYVCGKPGHFANKCRYRK 176
NCY+CGKPGH A C+ K
Sbjct: 389 NCYICGKPGHLAKFCKSNK 407
>gi|119178388|ref|XP_001240870.1| hypothetical protein CIMG_08033 [Coccidioides immitis RS]
Length = 1282
Score = 36.6 bits (83), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 158 NCYVCGKPGHFANKCRYRK 176
NCY+CGKPGH A C+ K
Sbjct: 317 NCYICGKPGHLAKFCKSNK 335
>gi|37806046|dbj|BAC99457.1| hypothetical protein [Oryza sativa Japonica Group]
gi|125603444|gb|EAZ42769.1| hypothetical protein OsJ_27349 [Oryza sativa Japonica Group]
Length = 222
Score = 36.6 bits (83), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 33/166 (19%), Positives = 58/166 (34%), Gaps = 37/166 (22%)
Query: 30 NKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQNFKMAEDKEVTSQIH 89
+ VCR IL+ LS+ ++ Y +H+ A + W DA A+ + A+ +Q
Sbjct: 69 DAVCRGHILAALSDRIFPDYVRHRTARDAW----------DAVARTYDNADAASAVAQ-- 116
Query: 90 GFHMLINDLKNENIILP--ESFMTIDQLEKAKEITSK------ANIVKNEAHPSKNQKPN 141
ML +DL + P E + L A +T A ++ P+
Sbjct: 117 --RMLYDDLALDGAPAPLLERIARAEALNAATRVTLSLSDAELAELLCQTVLPANAAAAI 174
Query: 142 KKFFKNKKTTFKKKK---------------GNCYVCGKPGHFANKC 172
+ + ++ + G C CG+ H C
Sbjct: 175 RSGAATMRDVWRVARIMEAQRVRREDEALHGKCRKCGRSRHHGCNC 220
>gi|225424701|ref|XP_002264105.1| PREDICTED: serine/arginine-rich splicing factor 7 [Vitis vinifera]
gi|296086540|emb|CBI32129.3| unnamed protein product [Vitis vinifera]
Length = 182
Score = 36.6 bits (83), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 13/19 (68%), Positives = 15/19 (78%)
Query: 159 CYVCGKPGHFANKCRYRKG 177
CY CG+PGHFA +CR R G
Sbjct: 97 CYECGEPGHFARECRLRIG 115
>gi|147819437|emb|CAN64502.1| hypothetical protein VITISV_020342 [Vitis vinifera]
Length = 660
Score = 36.6 bits (83), Expect = 6.5, Method: Composition-based stats.
Identities = 40/193 (20%), Positives = 73/193 (37%), Gaps = 41/193 (21%)
Query: 18 NYEVLLQNWIKANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQNFK 77
N L W++AN + S ++++++ E+Y A++IW +L+ +Y+ D G + F
Sbjct: 82 NEPYLCVAWLRANNLVLSWLMNSIAKEIYGSLLYFTNAFDIWEELKIRYLRND-GPRVFS 140
Query: 78 MAE--------DKEVTSQIHGFHMLIND--------------------------LKNENI 103
+ + K VT F L ++ L++
Sbjct: 141 LEKSLSSISQNSKSVTEYFSEFKALWDEYISYRPISNCRCGNFNRCSSIRSQLLLQSPLP 200
Query: 104 ILPESFMTIDQLEKAKEITSKANIVKNEAHPSKNQKPNKKFFKNKKTTFKKKKGN----C 159
+ F + Q E + +T+ I + Q + + T F K+KG C
Sbjct: 201 SMSRVFSLLLQEESQRSLTNAVGISIDSQAMVAEQ--SSRTVSTSNTRFIKQKGMFDAIC 258
Query: 160 YVCGKPGHFANKC 172
CG GH +KC
Sbjct: 259 SHCGYSGHLVDKC 271
>gi|119197189|ref|XP_001249196.1| hypothetical protein CIMG_10358 [Coccidioides immitis RS]
Length = 1382
Score = 36.6 bits (83), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 122 TSKANIVKNEAHPSKNQKPNKKFFKNKKTTFKKKKGNCYVCGKPGHFANKCRYRK 176
++K N + P K+ K +K++ + NCY+CGKPGH A C+ K
Sbjct: 350 STKPNTNATSSDPQKSYKNTNSESNPEKSSLQN--WNCYICGKPGHLAKFCKSNK 402
>gi|158578605|gb|ABW74576.1| pol polyprotein [Boechera divaricarpa]
Length = 708
Score = 36.6 bits (83), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 11/81 (13%)
Query: 138 QKPNKKFFKNKKTTFKKKKGNCYVCGKPGHFANKCRYRKGDHKPPKANLVDGEDIIV--- 194
+KP K KN K K CY CGK GHFA CR +K + D ED ++
Sbjct: 233 RKPKKDDSKNSKNDKK-----CYNCGKVGHFARDCRSKKYERAHMSLEDEDIEDHMLFNA 287
Query: 195 ---AVVVTQENMVAAKGKKNG 212
A ++T+E++ NG
Sbjct: 288 TEEAPIITKEDVWLVDSVGNG 308
>gi|344345640|gb|AEI98823.2| polyprotein [Grapevine vein-clearing virus]
Length = 1941
Score = 36.6 bits (83), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 121 ITSKANIVKNEAHPSKNQKPNKKFFKNKKTTFKKKKGNCYVCGKPGHFANKCRYRKGDHK 180
+ K + K++ + K + K KNK + +K CY+CG GH+A +C K +
Sbjct: 869 VKKKYGLRKSKTYKGKPHDSHVKVIKNKYKGAQGRKCKCYLCGIEGHYAREC--PKKHVR 926
Query: 181 PPKANLVDGEDIIV 194
P +A +G + V
Sbjct: 927 PERAAYFEGMGLDV 940
>gi|306478705|ref|YP_003864100.1| gag protein [Simian retrovirus 4]
gi|285019938|gb|ADC33199.1| gag protein [Simian retrovirus 4]
gi|288549214|gb|ADC52782.1| gag protein [Simian retrovirus 4]
gi|288549219|gb|ADC52786.1| gag protein [Simian retrovirus 4]
gi|292658953|gb|ADE34344.1| gag protein [Simian retrovirus 4]
Length = 659
Score = 36.6 bits (83), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
Query: 142 KKFFKNKKTTFKKKKGNCYVCGKPGHFANKCR 173
K F NK K KG C+ CGK GHFA CR
Sbjct: 538 KDFLNNKH----KDKGGCFKCGKRGHFAKDCR 565
>gi|58652020|dbj|BAD89356.1| gag [Simian type D retrovirus -Tsukuba]
Length = 659
Score = 36.6 bits (83), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
Query: 142 KKFFKNKKTTFKKKKGNCYVCGKPGHFANKCR 173
K F NK K KG C+ CGK GHFA CR
Sbjct: 538 KDFLNNKH----KDKGGCFKCGKRGHFAKDCR 565
>gi|403158850|ref|XP_003319537.2| hypothetical protein PGTG_01711 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375166487|gb|EFP75118.2| hypothetical protein PGTG_01711 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 447
Score = 36.6 bits (83), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 158 NCYVCGKPGHFANKCRYRKGDHK 180
NCY CGKPGH + KC + K D +
Sbjct: 408 NCYNCGKPGHISAKCPHPKSDRQ 430
>gi|108712175|gb|ABF99970.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 572
Score = 36.6 bits (83), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 8/91 (8%)
Query: 28 KANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAG--------AQNFKMA 79
+A + ILS L + L +VY A E+W L K+ DA ++KM+
Sbjct: 56 EATTLFVGCILSVLGDCLVEVYMYMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMS 115
Query: 80 EDKEVTSQIHGFHMLINDLKNENIILPESFM 110
++ V Q H + +++ +LP+ F+
Sbjct: 116 DNHSVVEQAHEIQTMAKEIELLKCVLPDKFV 146
>gi|443731296|gb|ELU16483.1| hypothetical protein CAPTEDRAFT_187670, partial [Capitella teleta]
Length = 258
Score = 36.6 bits (83), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 38/95 (40%), Gaps = 31/95 (32%)
Query: 87 QIHGFHMLINDLKNENIILPESFMTIDQLEKAKEITSKANIVKNEAHPSKNQKPNKKFFK 146
Q+ M++NDL + Q E +I A + K E P +N K N
Sbjct: 184 QVAALSMVVNDLVSL------------QKETCAQI---AALAKVEPKPPQNPKNN----- 223
Query: 147 NKKTTFKKKKGNCYVCGKPGHFANKCRYRKGDHKP 181
+CY CGK GHFA +CR + + P
Sbjct: 224 -----------SCYRCGKQGHFARECRTKDTNSLP 247
>gi|29126344|gb|AAO66536.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group]
Length = 570
Score = 36.6 bits (83), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 8/91 (8%)
Query: 28 KANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAG--------AQNFKMA 79
+A + ILS L + L +VY A E+W L K+ DA ++KM+
Sbjct: 56 EATTLFVGCILSVLGDCLVEVYMYMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMS 115
Query: 80 EDKEVTSQIHGFHMLINDLKNENIILPESFM 110
++ V Q H + +++ +LP+ F+
Sbjct: 116 DNHSVVEQAHEIQTMAKEIELLKCVLPDKFV 146
>gi|390357103|ref|XP_003728929.1| PREDICTED: uncharacterized protein LOC100890160 [Strongylocentrotus
purpuratus]
Length = 447
Score = 36.6 bits (83), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 153 KKKKGNCYVCGKPGHFANKCRYRK 176
+ KG CY CG+ GHF+ +C R+
Sbjct: 348 RAPKGPCYTCGRVGHFSRECNLRR 371
>gi|363807806|ref|NP_001242436.1| uncharacterized protein LOC100776329 [Glycine max]
gi|255640857|gb|ACU20711.1| unknown [Glycine max]
Length = 177
Score = 36.6 bits (83), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 13/19 (68%), Positives = 15/19 (78%)
Query: 159 CYVCGKPGHFANKCRYRKG 177
CY CG+PGHFA +CR R G
Sbjct: 89 CYECGEPGHFARECRLRIG 107
>gi|218191146|gb|EEC73573.1| hypothetical protein OsI_08026 [Oryza sativa Indica Group]
Length = 235
Score = 36.6 bits (83), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/17 (70%), Positives = 14/17 (82%)
Query: 159 CYVCGKPGHFANKCRYR 175
CY CG+PGHFA +CR R
Sbjct: 120 CYECGEPGHFARECRLR 136
>gi|115447241|ref|NP_001047400.1| Os02g0610600 [Oryza sativa Japonica Group]
gi|75324099|sp|Q6K9C3.1|RZP23_ORYSJ RecName: Full=Serine/arginine-rich splicing factor RSZ23; AltName:
Full=RS-containing zinc finger protein 23;
Short=Os-RSZ23; Short=Os-RSZp23
gi|47497180|dbj|BAD19227.1| putative splicing factor RSZp22 (RSZP22) [Oryza sativa Japonica
Group]
gi|113536931|dbj|BAF09314.1| Os02g0610600 [Oryza sativa Japonica Group]
gi|215704568|dbj|BAG94201.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737778|dbj|BAG96908.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765616|dbj|BAG87313.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 200
Score = 36.6 bits (83), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/17 (70%), Positives = 14/17 (82%)
Query: 159 CYVCGKPGHFANKCRYR 175
CY CG+PGHFA +CR R
Sbjct: 88 CYECGEPGHFARECRLR 104
>gi|255587593|ref|XP_002534324.1| arginine/serine-rich splicing factor, putative [Ricinus communis]
gi|223525498|gb|EEF28060.1| arginine/serine-rich splicing factor, putative [Ricinus communis]
Length = 184
Score = 36.6 bits (83), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 13/19 (68%), Positives = 15/19 (78%)
Query: 159 CYVCGKPGHFANKCRYRKG 177
CY CG+PGHFA +CR R G
Sbjct: 96 CYECGEPGHFARECRLRIG 114
>gi|440638498|gb|ELR08417.1| hypothetical protein GMDG_08638 [Geomyces destructans 20631-21]
Length = 106
Score = 36.6 bits (83), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Query: 104 ILPESFMTIDQLEKAKEITSKANIVK-NEAHPSKNQK----PNKKFFKNKKTTFKKKKGN 158
+ P SF++ +KA++ K +A P+ + P + KT GN
Sbjct: 1 MRPPSFLSCSWPAFLFRRNTKASVSKPTQATPALFTRATFLPKPTMLERVKTAVPASSGN 60
Query: 159 CYVCGKPGHF 168
C+ CGKPGHF
Sbjct: 61 CFKCGKPGHF 70
>gi|224144714|ref|XP_002325387.1| predicted protein [Populus trichocarpa]
gi|222862262|gb|EEE99768.1| predicted protein [Populus trichocarpa]
Length = 179
Score = 36.6 bits (83), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 13/19 (68%), Positives = 15/19 (78%)
Query: 159 CYVCGKPGHFANKCRYRKG 177
CY CG+PGHFA +CR R G
Sbjct: 93 CYECGEPGHFARECRLRIG 111
>gi|50550507|ref|XP_502726.1| YALI0D12056p [Yarrowia lipolytica]
gi|49648594|emb|CAG80914.1| YALI0D12056p [Yarrowia lipolytica CLIB122]
Length = 197
Score = 36.6 bits (83), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 17/31 (54%)
Query: 153 KKKKGNCYVCGKPGHFANKCRYRKGDHKPPK 183
+ G CY CGKPGHFA CR PPK
Sbjct: 101 RGPSGVCYKCGKPGHFARACRSVPAGGAPPK 131
>gi|170116085|ref|XP_001889235.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164635876|gb|EDR00178.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 416
Score = 36.6 bits (83), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 138 QKPNKKFFKNKKTTFKKKKGNCYVCGKPGHFANKCRYRKG 177
Q+PN ++K ++K C+ C +PGHF + C +R+
Sbjct: 235 QQPNISNPQSKVASYKMTSDGCWYCDEPGHFTSNCPHREA 274
>gi|147844168|emb|CAN80566.1| hypothetical protein VITISV_029672 [Vitis vinifera]
Length = 1636
Score = 36.6 bits (83), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 51/106 (48%), Gaps = 17/106 (16%)
Query: 12 PDSDSENYEVLLQNWIKANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDA 71
P++ + Y + WI N + S ++++++ ++ + + A EIW D
Sbjct: 76 PETTASTY----KKWIAENNMVMSWLVNSMTADIGENFLSFDTAKEIW----------DT 121
Query: 72 GAQNFKMAEDKEVTSQIHGFHMLINDLKNENIILPESFMTIDQLEK 117
+ F DKE TS+I +++DL+ N+ + E F T+ +L +
Sbjct: 122 AKETF---SDKENTSEIIQIEGILHDLRQGNLTVTEYFNTLTRLWR 164
>gi|6691188|gb|AAF24526.1|AC007534_7 F7F22.12 [Arabidopsis thaliana]
Length = 169
Score = 36.2 bits (82), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 159 CYVCGKPGHFANKCRYRKGDHKPPKANLVDGEDIIVAVVVTQENMVAAK 207
C++CGK HF +C Y+ G+H P ++ E+++ + E ++ K
Sbjct: 120 CWICGKEKHFNEQC-YKCGNHDPAMLSMATEENLVATDSIADEWVIRFK 167
>gi|345496972|ref|XP_003427865.1| PREDICTED: hypothetical protein LOC100118078 [Nasonia vitripennis]
Length = 381
Score = 36.2 bits (82), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 67/148 (45%), Gaps = 20/148 (13%)
Query: 26 WIKANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQNFKMAEDKEVT 85
W K + R+ I+ST+S++ + + + + ++ ++ + AG + ++ + + +
Sbjct: 12 WKKIDLKARTIIISTISDKQLKYVGELEEFFVEFEKVTNEFKV--AGGKLEEVEKLRYLI 69
Query: 86 SQIHGFHMLINDLKNENIILPESFMTIDQLE-KAKEITSKANIVKNEAHPSKNQKPNKKF 144
+ + I D + ++PE T+D +E K KE KN + K N
Sbjct: 70 RALPPNYSYIGDFID---VIPEDQRTVDYVESKIKE--------KNMTKAESDNKSNASI 118
Query: 145 FKNKKTTFKKKKGNCYVCGKPGHFANKC 172
F + KG CY CGK GH+ N+C
Sbjct: 119 FA------VQTKGKCYNCGKFGHYKNEC 140
>gi|222623220|gb|EEE57352.1| hypothetical protein OsJ_07486 [Oryza sativa Japonica Group]
Length = 203
Score = 36.2 bits (82), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 12/17 (70%), Positives = 14/17 (82%)
Query: 159 CYVCGKPGHFANKCRYR 175
CY CG+PGHFA +CR R
Sbjct: 88 CYECGEPGHFARECRLR 104
>gi|170089635|ref|XP_001876040.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164649300|gb|EDR13542.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 416
Score = 36.2 bits (82), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 138 QKPNKKFFKNKKTTFKKKKGNCYVCGKPGHFANKCRYRKG 177
Q+PN ++K ++K C+ C +PGHF + C +R+
Sbjct: 235 QQPNISNPQSKVASYKMTSDGCWYCDEPGHFTSNCPHREA 274
>gi|147818359|emb|CAN62623.1| hypothetical protein VITISV_001656 [Vitis vinifera]
Length = 1394
Score = 36.2 bits (82), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 51/106 (48%), Gaps = 17/106 (16%)
Query: 12 PDSDSENYEVLLQNWIKANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDA 71
P++ + Y + WI N + S ++++++ ++ + + A EIW D
Sbjct: 67 PETTASTY----KKWIAENNMVMSWLVNSMTADIGENFLSFDTAKEIW----------DT 112
Query: 72 GAQNFKMAEDKEVTSQIHGFHMLINDLKNENIILPESFMTIDQLEK 117
+ F DKE TS+I +++DL+ N+ + E F T+ +L +
Sbjct: 113 AKETF---SDKENTSEIIQIEGILHDLRQGNLTVTEYFNTLTRLWR 155
>gi|119197279|ref|XP_001249241.1| hypothetical protein CIMG_10403 [Coccidioides immitis RS]
Length = 162
Score = 36.2 bits (82), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 13/63 (20%)
Query: 127 IVKNEAHPSKNQKPN--------KKFFKNKKTTFKKKKG-----NCYVCGKPGHFANKCR 173
I K + ++ KPN +K +KN + F +K NCY+CGKPGH C+
Sbjct: 25 ISKKDLKKDRSTKPNTNATSSDSQKSYKNTNSKFNPEKSSLQNWNCYICGKPGHLTKFCK 84
Query: 174 YRK 176
K
Sbjct: 85 SNK 87
>gi|403373831|gb|EJY86842.1| Putative ubiquitin-like protein [Oxytricha trifallax]
Length = 110
Score = 36.2 bits (82), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 7/70 (10%)
Query: 136 KNQKPNKKFFKNKKTTFKKKKGNCYVCGKPGHFANKCRY------RKGDHKPPKANLVDG 189
K+Q + FFK K+TT KK + Y C + G N+CR+ K D P K + +G
Sbjct: 29 KSQDGTEIFFKIKRTTQLKKLMDAY-CNRQGLSINQCRFIFDGERLKDDDTPDKLEMENG 87
Query: 190 EDIIVAVVVT 199
++I V V T
Sbjct: 88 DEIDVMVEQT 97
>gi|410932321|ref|XP_003979542.1| PREDICTED: uncharacterized protein K02A2.6-like, partial [Takifugu
rubripes]
Length = 765
Score = 36.2 bits (82), Expect = 8.3, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 10/118 (8%)
Query: 67 IIEDAGAQNFKMAEDKEVTSQIHGFHMLINDLKNENIILPESFMTIDQ-LEKAKEITSKA 125
+I DA A F ED + + +H I D + + +L E +T D+ L+ A+ I +
Sbjct: 36 LIWDALA--FLDTEDSCIVAPLHTLVCGIVDDRIQRRLLSEPDLTFDKALKLAQAIETAC 93
Query: 126 NIVKNEAHPS-------KNQKPNKKFFKNKKTTFKKKKGNCYVCGKPGHFANKCRYRK 176
VK+ P Q +K + K T + ++ CY CG H A CR+ K
Sbjct: 94 KDVKDLQSPEFVPQYMRAPQAVHKVYSKQTPYTQQNQRKVCYRCGSDQHMAGDCRFIK 151
>gi|5442109|gb|AAD43258.1|AF126468_1 Gag protein [Simian retrovirus 2]
Length = 654
Score = 36.2 bits (82), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
Query: 142 KKFFKNKKTTFKKKKGNCYVCGKPGHFANKCR 173
K F NK K +G C+ CGK GHFA CR
Sbjct: 533 KDFLNNKN----KDRGGCFKCGKRGHFAKDCR 560
>gi|394743641|ref|YP_006495799.1| polyprotein [Gooseberry vein banding virus]
gi|392856295|gb|AFM84639.1| polyprotein [Gooseberry vein banding virus]
Length = 1910
Score = 36.2 bits (82), Expect = 8.4, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 124 KANIVKNEAHPSKNQKPNKKFFKNKKTTFKKKKGNCYVCGKPGHFANKC 172
K + K+ + K + K KNK +K CY+CG GH+A +C
Sbjct: 849 KYGVRKSTTYKGKPHDTHVKVIKNKDKNAPGRKCKCYLCGIEGHYAREC 897
>gi|170101074|ref|XP_001881754.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164643109|gb|EDR07362.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 416
Score = 36.2 bits (82), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 138 QKPNKKFFKNKKTTFKKKKGNCYVCGKPGHFANKCRYRKG 177
Q+PN ++K ++K C+ C +PGHF + C +R+
Sbjct: 235 QQPNISNPQSKVASYKMTSDGCWYCDEPGHFTSNCPHREA 274
>gi|332273795|gb|AEE39276.1| polyprotein [Gooseberry vein banding virus]
Length = 1910
Score = 36.2 bits (82), Expect = 8.4, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 124 KANIVKNEAHPSKNQKPNKKFFKNKKTTFKKKKGNCYVCGKPGHFANKC 172
K + K+ + K + K KNK +K CY+CG GH+A +C
Sbjct: 849 KYGVRKSTTYKGKPHDTHVKVIKNKDKNAPGRKCKCYLCGIEGHYAREC 897
>gi|332273791|gb|AEE39273.1| polyprotein [Gooseberry vein banding virus]
Length = 1910
Score = 36.2 bits (82), Expect = 8.4, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 124 KANIVKNEAHPSKNQKPNKKFFKNKKTTFKKKKGNCYVCGKPGHFANKC 172
K + K+ + K + K KNK +K CY+CG GH+A +C
Sbjct: 849 KYGVRKSTTYKGKPHDTHVKVIKNKDKNAPGRKCKCYLCGIEGHYAREC 897
>gi|332273787|gb|AEE39270.1| polyprotein [Gooseberry vein banding virus]
Length = 1910
Score = 36.2 bits (82), Expect = 8.4, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 124 KANIVKNEAHPSKNQKPNKKFFKNKKTTFKKKKGNCYVCGKPGHFANKC 172
K + K+ + K + K KNK +K CY+CG GH+A +C
Sbjct: 849 KYGVRKSTTYKGKPHDTHVKVIKNKDKNAPGRKCKCYLCGIEGHYAREC 897
>gi|448878397|gb|AGE46161.1| arginine/serine-rich splicing factor RSZ23 transcript I
[Physcomitrella patens subsp. patens]
Length = 210
Score = 36.2 bits (82), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 12/17 (70%), Positives = 14/17 (82%)
Query: 159 CYVCGKPGHFANKCRYR 175
CY CG+PGHFA +CR R
Sbjct: 88 CYECGEPGHFARECRLR 104
>gi|147776306|emb|CAN76473.1| hypothetical protein VITISV_016007 [Vitis vinifera]
Length = 1002
Score = 36.2 bits (82), Expect = 8.5, Method: Composition-based stats.
Identities = 45/175 (25%), Positives = 77/175 (44%), Gaps = 27/175 (15%)
Query: 26 WIKANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAGAQNFK-------M 78
W+ + S IL+++S +Y + + E+W+ L K ++ D ++N +
Sbjct: 102 WVILDXFLLSWILASISEAMYGHVVNCQTSAEVWSVLEKLFV-SDYKSKNSSTTVHATII 160
Query: 79 AEDKEVTSQIHGFHMLINDLKNENIILPE-SFMTIDQLEKAKEIT------SKANIVKNE 131
E E S + H L L++ I L + S ++ + A IT S N +
Sbjct: 161 KERSEAIS-LQEVHYL---LQSHEIRLEQLSAASVIDVPPAAHITVGGVQNSNTNNGQFR 216
Query: 132 AHPSKNQKPNKKFFKNKKTTFKKKKGNCYVCGKPGHFANKCRYRKGDH--KPPKA 184
SKN +P +N +T+ + C +CGK GH A KC +R + PP+A
Sbjct: 217 GSSSKNFRPRN--VRNPQTS----RIVCQLCGKMGHTAMKCFHRFDVYFQSPPRA 265
>gi|32480325|emb|CAE02457.1| OSJNBa0042D13.10 [Oryza sativa Japonica Group]
Length = 598
Score = 36.2 bits (82), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Query: 138 QKPNKKFFKNKKTTFKKKKGN----CYVCGKPGHFANKC 172
Q P ++ FK+++G+ C+ CG PGH+A+KC
Sbjct: 507 QAPRPVAAPTQQQPFKREQGSKPVVCFNCGDPGHYADKC 545
>gi|5442104|gb|AAD43254.1|AF126467_1 Gag protein [Simian retrovirus 2]
Length = 654
Score = 36.2 bits (82), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
Query: 142 KKFFKNKKTTFKKKKGNCYVCGKPGHFANKCR 173
K F NK K +G C+ CGK GHFA CR
Sbjct: 533 KDFLNNKN----KDRGGCFKCGKRGHFAKDCR 560
>gi|449542239|gb|EMD33219.1| hypothetical protein CERSUDRAFT_98812 [Ceriporiopsis subvermispora
B]
Length = 561
Score = 36.2 bits (82), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 154 KKKGNCYVCGKPGHFANKCRYRKGDHKPPKA 184
++KG CY CGK GH A C RK HK P+
Sbjct: 492 REKGLCYNCGKGGHLAASCPDRK--HKAPQG 520
>gi|336386634|gb|EGO27780.1| hypothetical protein SERLADRAFT_435538 [Serpula lacrymans var.
lacrymans S7.9]
Length = 400
Score = 36.2 bits (82), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 153 KKKKGNCYVCGKPGHFANKCRYRKGDHKPPKANLVDGEDIIVAVV 197
++K+G C++C + GH CRY KG K + ED VV
Sbjct: 325 RRKEGRCFICNEKGHIGRNCRY-KGKTPERKVRQTETEDDTKTVV 368
>gi|326537260|ref|YP_004300272.1| coat protein [Sweet potato vein clearing virus]
gi|325698379|gb|ADZ45062.1| coat protein [Sweet potato vein clearing virus]
Length = 650
Score = 36.2 bits (82), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 18/67 (26%)
Query: 145 FKNKK--TTFKKKKGNC--YVCGKPGHFANKCRYRKGDHKPPKANLVDGEDIIVAVVVTQ 200
+KN+K +KKK +C Y CGK GH+AN+CR KP K +L + ++ +
Sbjct: 578 YKNRKNYARYKKKPKDCKCYNCGKLGHYANECR------KPKKKDLNE--------IIIK 623
Query: 201 ENMVAAK 207
+N++ +
Sbjct: 624 DNLIEVR 630
>gi|170107446|ref|XP_001884933.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164640147|gb|EDR04414.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 416
Score = 36.2 bits (82), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 138 QKPNKKFFKNKKTTFKKKKGNCYVCGKPGHFANKCRYRKG 177
Q+PN ++K ++K C+ C +PGHF + C +R+
Sbjct: 235 QQPNISNPQSKVASYKMTSDGCWYCDEPGHFTSNCPHREA 274
>gi|66799607|ref|XP_628729.1| hypothetical protein DDB_G0294338 [Dictyostelium discoideum AX4]
gi|60462063|gb|EAL60316.1| hypothetical protein DDB_G0294338 [Dictyostelium discoideum AX4]
Length = 693
Score = 36.2 bits (82), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
Query: 133 HPSKNQKPNKKFFKN-KKTTFKKK-KGN---CYVCGKPGHFANKCR 173
HP N K + + N KK +K K KG CY CGK GHFAN+C+
Sbjct: 214 HPDYNVKQEQNNYANVKKHQYKNKPKGKPLKCYKCGKLGHFANQCK 259
>gi|115456445|ref|NP_001051823.1| Os03g0836200 [Oryza sativa Japonica Group]
gi|40714682|gb|AAR88588.1| putative RNA binding protein [Oryza sativa Japonica Group]
gi|108711961|gb|ABF99756.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|108711962|gb|ABF99757.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|108711963|gb|ABF99758.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|108711964|gb|ABF99759.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|113550294|dbj|BAF13737.1| Os03g0836200 [Oryza sativa Japonica Group]
gi|125546344|gb|EAY92483.1| hypothetical protein OsI_14220 [Oryza sativa Indica Group]
gi|125588547|gb|EAZ29211.1| hypothetical protein OsJ_13272 [Oryza sativa Japonica Group]
gi|215695067|dbj|BAG90258.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215715212|dbj|BAG94963.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215764998|dbj|BAG86695.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 205
Score = 36.2 bits (82), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 12/16 (75%), Positives = 14/16 (87%)
Query: 157 GNCYVCGKPGHFANKC 172
G+CY CGKPGHFA +C
Sbjct: 126 GDCYKCGKPGHFAREC 141
>gi|147801115|emb|CAN75466.1| hypothetical protein VITISV_025054 [Vitis vinifera]
Length = 1576
Score = 36.2 bits (82), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 50/104 (48%), Gaps = 17/104 (16%)
Query: 12 PDSDSENYEVLLQNWIKANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDA 71
P++ + Y + WI N + S ++++++ ++ + + A EIW D
Sbjct: 191 PETTASTY----KKWIAENNMVMSWLVNSMTADIGENFLSFDTAKEIW----------DT 236
Query: 72 GAQNFKMAEDKEVTSQIHGFHMLINDLKNENIILPESFMTIDQL 115
+ F DKE TS+I +++DL+ N+ + E F T+ +L
Sbjct: 237 AKETFS---DKENTSEIIQIEGILHDLRQGNLTVTEYFNTLTRL 277
>gi|37718865|gb|AAR01736.1| putative Gag and Pol polyprotein [Oryza sativa Japonica Group]
gi|108709997|gb|ABF97792.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1177
Score = 36.2 bits (82), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 8/91 (8%)
Query: 28 KANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDAG--------AQNFKMA 79
+A + ILS L L +VY A E+W L K+ DA ++KMA
Sbjct: 83 EATTLFVGCILSVLGYRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIIEQFHDYKMA 142
Query: 80 EDKEVTSQIHGFHMLINDLKNENIILPESFM 110
+++ V Q H + +L+ +L F+
Sbjct: 143 DNRSVVKQAHEIQTMAKELELLKCVLLNKFV 173
>gi|218347061|emb|CAQ60124.1| Gag protein [Simian immunodeficiency virus - olc]
Length = 480
Score = 36.2 bits (82), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 15/53 (28%)
Query: 145 FKNKKTTFKKKKGNCYVCGKPGHFANKCR---------------YRKGDHKPP 182
F + K +K CY CGKPGH A CR +R G +PP
Sbjct: 377 FGHTKNNCSQKGPTCYKCGKPGHIAKNCRVGGQQQQSKVNFLGKWRGGKAEPP 429
>gi|147778858|emb|CAN73696.1| hypothetical protein VITISV_038483 [Vitis vinifera]
Length = 1783
Score = 36.2 bits (82), Expect = 9.2, Method: Composition-based stats.
Identities = 51/240 (21%), Positives = 89/240 (37%), Gaps = 72/240 (30%)
Query: 10 PPPDSDSENYEVLLQNWIKANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIE 69
P + D E Y W + N + S I++TL+ + D + A+E+W L +++ Z
Sbjct: 454 PSEEIDPEGY----ATWSRCNDMVHSWIVNTLNPXIADSVIYYSTAHEVWEDLCERF-SZ 508
Query: 70 DAGAQNFKMAED-----KEVTS-----------QIHGFHMLINDLKNENIILPESFMTID 113
+ F++ D KE S IHG +L+N L + + +++ ++
Sbjct: 509 SNAPRIFEIQRDIACLXKEQLSVSAYYTKLKGLAIHGQILLMNPLPS----VRQAYSSVS 564
Query: 114 QLEKAKEITS------------------------------KANIVKNEA--HPSKNQ--- 138
Q EK + +TS ++N + E HPS +Q
Sbjct: 565 QEEKQRLLTSTNAXAESAASAAMAVRSNXKSSATWKDGIDRSNTGRMEXTDHPSSSQNFR 624
Query: 139 -------KPNKKFFKN--KKTTFKKKKGNCYVCGKPGHFANKCRYRKG---DHKPPKANL 186
+ FF ++ + C CG GH+ KC G DH + NL
Sbjct: 625 VNRSSQGQDGXPFFDQDWRRMGSGXGRPQCSYCGDMGHWVQKCFQLHGYPPDHPKARINL 684
>gi|27819380|ref|NP_777317.1| putative polyprotein [Kalanchoe top-spotting virus]
gi|27802651|gb|AAO21220.1| putative polyprotein [Kalanchoe top-spotting virus]
Length = 1941
Score = 36.2 bits (82), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 137 NQKPNK---KFFKNKKTTFKKKKGNCYVCGKPGHFANKC 172
N KP+K + + K +K + CY CG+ GHFA+ C
Sbjct: 741 NGKPHKSHVRIARKKHLALRKSECKCYACGELGHFASDC 779
>gi|55168121|gb|AAV43988.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1594
Score = 36.2 bits (82), Expect = 9.3, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 130 NEAHPSKNQKPNKKFFKNKKTTFKKKKGN----CYVCGKPGHFANKC 172
N + +NQ P ++ KK++G+ C+ CG PGH+A+KC
Sbjct: 441 NAGNNIRNQAPRPVAASTQQQPAKKEQGSKPGVCFNCGDPGHYADKC 487
>gi|270015966|gb|EFA12414.1| hypothetical protein TcasGA2_TC006847 [Tribolium castaneum]
Length = 1470
Score = 36.2 bits (82), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%)
Query: 128 VKNEAHPSKNQKPNKKFFKNKKTTFKKKKGNCYVCGKPGHFANKCR 173
V N A + + K+ + T K + C+ CGKPGHFA CR
Sbjct: 261 VSNGARARETTQQKKEQSRLPHTKTKDGRPKCFNCGKPGHFAAACR 306
>gi|147810137|emb|CAN73532.1| hypothetical protein VITISV_012827 [Vitis vinifera]
Length = 1194
Score = 36.2 bits (82), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 17/27 (62%)
Query: 151 TFKKKKGNCYVCGKPGHFANKCRYRKG 177
T KK +G CY CGK GH A C +KG
Sbjct: 252 TRKKXEGKCYNCGKKGHMAKDCWSKKG 278
>gi|108710679|gb|ABF98474.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1753
Score = 36.2 bits (82), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 17/82 (20%)
Query: 97 DLKNENIILPESFMTIDQLEKAKEITSKANIVKNEAHPSKNQKPNKKFFKNKKTTFKKKK 156
DL+ E ++L F D L + KE +N ++ KN++PNK +
Sbjct: 233 DLEEEMVLLARRFN--DLLGRRKERGRGSN-----SNRRKNRRPNKTLSNLR-------- 277
Query: 157 GNCYVCGKPGHFANKCRYRKGD 178
C+ CG+ GHFA+KC + D
Sbjct: 278 --CFECGEKGHFASKCPSKDDD 297
>gi|296084335|emb|CBI24723.3| unnamed protein product [Vitis vinifera]
Length = 364
Score = 36.2 bits (82), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 23/106 (21%), Positives = 52/106 (49%), Gaps = 17/106 (16%)
Query: 12 PDSDSENYEVLLQNWIKANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDA 71
P++ + Y + WI N + S ++++++ ++ + + A EIW ++ +
Sbjct: 76 PETTASTY----KKWIAENNMVMSWLVNSMTADIGENFLSFDTAKEIWNTAKETF----- 126
Query: 72 GAQNFKMAEDKEVTSQIHGFHMLINDLKNENIILPESFMTIDQLEK 117
DKE TS+I +++DL+ N+++ E F T+ +L +
Sbjct: 127 --------SDKENTSEIIQIEGILHDLRQGNLMVTEYFNTLTRLWR 164
>gi|147809827|emb|CAN73765.1| hypothetical protein VITISV_035279 [Vitis vinifera]
Length = 2260
Score = 36.2 bits (82), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 51/106 (48%), Gaps = 17/106 (16%)
Query: 12 PDSDSENYEVLLQNWIKANKVCRSTILSTLSNELYDVYSQHKFAYEIWAQLRKKYIIEDA 71
P++ + Y + WI N + S ++++++ ++ + + A EIW D
Sbjct: 1160 PETTASTY----KKWIAENNMVMSWLVNSMTADIGENFLSFDTAKEIW----------DI 1205
Query: 72 GAQNFKMAEDKEVTSQIHGFHMLINDLKNENIILPESFMTIDQLEK 117
+ F DKE TS+I +++DL+ N+ + E F T+ +L +
Sbjct: 1206 AKETF---SDKENTSEIIQIEGILHDLRQGNLTVTEYFNTLTRLWR 1248
>gi|4335731|gb|AAD17409.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1347
Score = 36.2 bits (82), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 6/37 (16%)
Query: 138 QKP-NKKFFKNKKTTFKKKKGNCYVCGKPGHFANKCR 173
+KP N KNK++ K CY CGK GH+AN+CR
Sbjct: 257 EKPKNDDHGKNKRSNIK-----CYKCGKIGHYANECR 288
>gi|336359790|gb|AEI53636.1| gag protein [Human immunodeficiency virus 1]
Length = 433
Score = 36.2 bits (82), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 8/57 (14%)
Query: 117 KAKEITSKANIVKNEAHPSKNQKPNKKFFKNKKTTFKKKKGNCYVCGKPGHFANKCR 173
KA+ + + V N A QK N F+N++ T K C+ CGK GH A CR
Sbjct: 361 KARXLAEAMSQVTNSAATIMMQKGN---FRNQRKTIK-----CFNCGKEGHLARNCR 409
>gi|13937301|gb|AAK50132.1|AC087797_17 putative gag-pol polyprotein [Oryza sativa Japonica Group]
Length = 1700
Score = 36.2 bits (82), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 17/82 (20%)
Query: 97 DLKNENIILPESFMTIDQLEKAKEITSKANIVKNEAHPSKNQKPNKKFFKNKKTTFKKKK 156
DL+ E ++L F D L + KE +N ++ KN++PNK +
Sbjct: 233 DLEEEMVLLARRFN--DLLGRRKERGRGSN-----SNRRKNRRPNKTLSNLR-------- 277
Query: 157 GNCYVCGKPGHFANKCRYRKGD 178
C+ CG+ GHFA+KC + D
Sbjct: 278 --CFECGEKGHFASKCPSKDDD 297
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.314 0.131 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,397,352,214
Number of Sequences: 23463169
Number of extensions: 133975613
Number of successful extensions: 370776
Number of sequences better than 100.0: 825
Number of HSP's better than 100.0 without gapping: 389
Number of HSP's successfully gapped in prelim test: 436
Number of HSP's that attempted gapping in prelim test: 369577
Number of HSP's gapped (non-prelim): 1226
length of query: 212
length of database: 8,064,228,071
effective HSP length: 136
effective length of query: 76
effective length of database: 9,168,204,383
effective search space: 696783533108
effective search space used: 696783533108
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 73 (32.7 bits)