BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045687
(212 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P19199|POL_COYMV Polyprotein P3 OS=Commelina yellow mottle virus PE=3 SV=2
Length = 1886
Score = 38.5 bits (88), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 20/27 (74%)
Query: 154 KKKGNCYVCGKPGHFANKCRYRKGDHK 180
++K CY+CG+ GH+AN+CR + D +
Sbjct: 876 QRKCKCYICGQEGHYANQCRNKHKDQQ 902
>sp|P27502|POL_RTBVP Polyprotein P3 OS=Rice tungro bacilliform virus (isolate
Philippines) PE=1 SV=1
Length = 1675
Score = 37.4 bits (85), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 154 KKKGNCYVCGKPGHFANKCRYRKGDHKPPKANLVDGED-IIVAVVVTQENM 203
KKK CY+C H AN+C R + +A+L+DG D IV++ E++
Sbjct: 769 KKKCRCYICQDENHLANRCPRRYTNQ--ARASLIDGLDEDIVSIASDDEDI 817
>sp|Q04095|POL_RSVSA Gag-Pro-Pol polyprotein OS=Avian leukosis virus RSA GN=gag-pro-pol
PE=3 SV=2
Length = 1603
Score = 37.0 bits (84), Expect = 0.11, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 154 KKKGNCYVCGKPGHFANKC-RYRKGDHKPPKANLVDG 189
+ +G CY CG PGH+ +C + RK + + L DG
Sbjct: 504 RARGLCYTCGSPGHYQAQCPKKRKSGNSRERCQLCDG 540
>sp|P0C776|GAG_RSVSA Gag-Pro polyprotein OS=Avian leukosis virus RSA GN=gag-pro PE=3
SV=1
Length = 701
Score = 37.0 bits (84), Expect = 0.11, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 154 KKKGNCYVCGKPGHFANKC-RYRKGDHKPPKANLVDG 189
+ +G CY CG PGH+ +C + RK + + L DG
Sbjct: 504 RARGLCYTCGSPGHYQAQCPKKRKSGNSRERCQLCDG 540
>sp|Q6K9C3|RZP23_ORYSJ Serine/arginine-rich splicing factor RSZ23 OS=Oryza sativa subsp.
japonica GN=RSZ23 PE=2 SV=1
Length = 200
Score = 36.6 bits (83), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 12/17 (70%), Positives = 14/17 (82%)
Query: 159 CYVCGKPGHFANKCRYR 175
CY CG+PGHFA +CR R
Sbjct: 88 CYECGEPGHFARECRLR 104
>sp|P19558|GAG_BIV29 Gag polyprotein OS=Bovine immunodeficiency virus (strain R29)
GN=gag PE=1 SV=2
Length = 476
Score = 36.2 bits (82), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 131 EAHPSKNQKP--NKKFFKNKKTTFKK---KKGNCYVCGKPGHFANKCRYRKG 177
EA+ S+ P ++ + KT K K+ CY CGKPGH A CR + G
Sbjct: 390 EAYASQTSGPEDGRRCYGCGKTGHLKRNCKQQKCYHCGKPGHQARNCRSKNG 441
>sp|Q759T4|EIF3G_ASHGO Eukaryotic translation initiation factor 3 subunit G OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=TIF35 PE=3 SV=1
Length = 269
Score = 36.2 bits (82), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 159 CYVCGKPGHFANKCRYRK--GDHKPPKANLVDGEDIIVAVVVTQENMVAAKGK 209
C CG PGHF KC +R G+ P +GE + A V T +A GK
Sbjct: 112 CRTCGIPGHFTTKCPFRDILGEMSGP----AEGEGGLDAAVDTAMPAASAPGK 160
>sp|P17283|POL_SIVCZ Gag-Pol polyprotein OS=Simian immunodeficiency virus (isolate CPZ
GAB1) GN=gag-pol PE=3 SV=2
Length = 1384
Score = 36.2 bits (82), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 122 TSKANIVKNEAHPSKNQKPNKKFFKNKKTTFKKKKGNCYVCGKPGHFANKCR--YRKG 177
+ KA ++ +NQ FF+ + K+K C+ CGK GH A C+ RKG
Sbjct: 306 SHKARVLAEAMSMVQNQGRADVFFQKGQGAGPKRKIKCFNCGKEGHLARNCKAPRRKG 363
>sp|P09519|CAPSD_FMVD Probable capsid protein OS=Figwort mosaic virus (strain DxS) GN=ORF
IV PE=3 SV=1
Length = 489
Score = 35.8 bits (81), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 140 PNKKFFKNKKTTF---KKKKGNCYVCGKPGHFANKCRYRKGDHKPPKANLVDG 189
P K F K K F +KK C++C + GH+AN+C RK H+ L+ G
Sbjct: 389 PGKYFSKKKPEKFCPQGRKKCRCWICTEEGHYANECPNRKS-HQEKVKILIHG 440
>sp|P16900|GAG_OMVVS Gag polyprotein OS=Ovine maedi visna related virus (strain South
Africa) GN=gag PE=3 SV=1
Length = 446
Score = 35.4 bits (80), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 11/15 (73%), Positives = 12/15 (80%)
Query: 159 CYVCGKPGHFANKCR 173
CY CGKPGH A +CR
Sbjct: 386 CYYCGKPGHLARQCR 400
Score = 31.6 bits (70), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 159 CYVCGKPGHFANKCRYRKGDHKPPKANLVDGEDII 193
C+ CGK GH CR +KG+ + N G ++
Sbjct: 405 CHHCGKRGHMQKDCRQKKGNPTSQQGNSRRGPRVV 439
>sp|P17282|GAG_SIVCZ Gag polyprotein OS=Simian immunodeficiency virus (isolate CPZ GAB1)
GN=gag PE=3 SV=1
Length = 508
Score = 35.4 bits (80), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 124 KANIVKNEAHPSKNQKPNKKFFKNKKTTFKKKKGNCYVCGKPGHFANKCR--YRKG 177
KA ++ +NQ FF+ + K+K C+ CGK GH A C+ RKG
Sbjct: 367 KARVLAEAMSMVQNQGRADVFFQKGQGAGPKRKIKCFNCGKEGHLARNCKAPRRKG 422
>sp|P51516|GAG_SRV2 Gag polyprotein OS=Simian retrovirus SRV-2 GN=gag PE=3 SV=3
Length = 654
Score = 35.0 bits (79), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 154 KKKGNCYVCGKPGHFANKCR 173
K +G C+ CGK GHFA CR
Sbjct: 541 KDRGGCFKCGKKGHFAKDCR 560
>sp|P03354|POL_RSVP Gag-Pro-Pol polyprotein OS=Rous sarcoma virus (strain Prague C)
GN=gag-pro-pol PE=1 SV=2
Length = 1603
Score = 35.0 bits (79), Expect = 0.42, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 154 KKKGNCYVCGKPGHFANKC-RYRKGDHKPPKANLVDG 189
+ +G CY CG PGH+ +C + RK + + L +G
Sbjct: 504 RARGLCYTCGSPGHYQAQCPKKRKSGNSRERCQLCNG 540
>sp|P03322|GAG_RSVP Gag-Pro polyprotein OS=Rous sarcoma virus (strain Prague C)
GN=gag-pro PE=1 SV=1
Length = 701
Score = 35.0 bits (79), Expect = 0.42, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 154 KKKGNCYVCGKPGHFANKC-RYRKGDHKPPKANLVDG 189
+ +G CY CG PGH+ +C + RK + + L +G
Sbjct: 504 RARGLCYTCGSPGHYQAQCPKKRKSGNSRERCQLCNG 540
>sp|P23425|GAG_VILV2 Gag polyprotein OS=Maedi visna virus (strain 1514 / clone LV1-1KS2)
GN=gag PE=3 SV=1
Length = 442
Score = 34.7 bits (78), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 11/15 (73%), Positives = 12/15 (80%)
Query: 159 CYVCGKPGHFANKCR 173
CY CGKPGH A +CR
Sbjct: 387 CYNCGKPGHLARQCR 401
>sp|P35955|GAG_VILVK Gag polyprotein OS=Maedi visna virus (strain KV1772) GN=gag PE=3
SV=1
Length = 442
Score = 34.7 bits (78), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 11/15 (73%), Positives = 12/15 (80%)
Query: 159 CYVCGKPGHFANKCR 173
CY CGKPGH A +CR
Sbjct: 387 CYNCGKPGHLARQCR 401
>sp|P23424|GAG_VILV1 Gag polyprotein OS=Maedi visna virus (strain 1514 / clone LV1-1KS1)
GN=gag PE=3 SV=1
Length = 442
Score = 34.3 bits (77), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 11/15 (73%), Positives = 12/15 (80%)
Query: 159 CYVCGKPGHFANKCR 173
CY CGKPGH A +CR
Sbjct: 387 CYNCGKPGHLARQCR 401
>sp|P03352|GAG_VILV Gag polyprotein OS=Maedi visna virus (strain 1514) GN=gag PE=3 SV=1
Length = 442
Score = 34.3 bits (77), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 11/15 (73%), Positives = 12/15 (80%)
Query: 159 CYVCGKPGHFANKCR 173
CY CGKPGH A +CR
Sbjct: 387 CYNCGKPGHLARQCR 401
>sp|O92956|POL_RSVSB Gag-Pro-Pol polyprotein OS=Rous sarcoma virus (strain
Schmidt-Ruppin B) GN=gag-pro-pol PE=1 SV=2
Length = 1603
Score = 34.3 bits (77), Expect = 0.58, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 159 CYVCGKPGHFANKC-RYRKGDHKPPKANLVDG 189
CY CG PGH+ +C + RK + + L DG
Sbjct: 509 CYTCGSPGHYQAQCPKKRKSGNSRERCQLCDG 540
>sp|O92954|GAG_RSVSB Gag-Pro polyprotein OS=Rous sarcoma virus (strain Schmidt-Ruppin B)
GN=gag-pro PE=1 SV=1
Length = 701
Score = 34.3 bits (77), Expect = 0.58, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 159 CYVCGKPGHFANKC-RYRKGDHKPPKANLVDG 189
CY CG PGH+ +C + RK + + L DG
Sbjct: 509 CYTCGSPGHYQAQCPKKRKSGNSRERCQLCDG 540
>sp|Q03042|KGP1_DROME cGMP-dependent protein kinase, isozyme 1 OS=Drosophila melanogaster
GN=Pkg21D PE=1 SV=2
Length = 768
Score = 34.3 bits (77), Expect = 0.66, Method: Composition-based stats.
Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 14/105 (13%)
Query: 34 RSTILSTLSN---ELYDVYSQHKFAY---------EIWAQLRKKYIIEDAGAQNFKMAED 81
R +LS+ S LY + K+ Y EIW LR + ED AQ F +
Sbjct: 508 RHIMLSSRSPFICRLYRTFRDEKYVYMLLEACMGGEIWTMLRDRGSFEDNAAQ-FIIGCV 566
Query: 82 KEVTSQIHGFHMLINDLKNENIILPE-SFMTIDQLEKAKEITSKA 125
+ +H ++ DLK EN++L E ++ I AK+I + +
Sbjct: 567 LQAFEYLHARGIIYRDLKPENLMLDERGYVKIVDFGFAKQIGTSS 611
>sp|P19560|POL_BIV29 Gag-Pol polyprotein OS=Bovine immunodeficiency virus (strain R29)
GN=gag-pol PE=1 SV=2
Length = 1475
Score = 34.3 bits (77), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Query: 131 EAHPSKNQKP--NKKFFKNKKTTFKK---KKGNCYVCGKPGHFANKCR 173
EA+ S+ P ++ + KT K K+ CY CGKPGH A CR
Sbjct: 390 EAYASQTSGPEDGRRCYGCGKTGHLKRNCKQQKCYHCGKPGHQARNCR 437
>sp|P69732|GAG_EIAVY Gag polyprotein OS=Equine infectious anemia virus (strain Wyoming)
GN=gag PE=1 SV=1
Length = 486
Score = 34.3 bits (77), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 158 NCYVCGKPGHFANKCRYRK 176
CY CGKPGH +++CR K
Sbjct: 382 TCYNCGKPGHLSSQCRAPK 400
>sp|P69731|GAG_EIAVC Gag polyprotein OS=Equine infectious anemia virus (isolate CL22)
GN=gag PE=3 SV=1
Length = 486
Score = 34.3 bits (77), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 158 NCYVCGKPGHFANKCRYRK 176
CY CGKPGH +++CR K
Sbjct: 382 TCYNCGKPGHLSSQCRAPK 400
>sp|P69730|GAG_EIAV9 Gag polyprotein OS=Equine infectious anemia virus (isolate 1369)
GN=gag PE=1 SV=1
Length = 486
Score = 34.3 bits (77), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 158 NCYVCGKPGHFANKCRYRK 176
CY CGKPGH +++CR K
Sbjct: 382 TCYNCGKPGHLSSQCRAPK 400
>sp|P31622|GAG_JSRV Gag polyprotein OS=Sheep pulmonary adenomatosis virus GN=gag PE=1
SV=1
Length = 612
Score = 33.9 bits (76), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 146 KNKKTTFKKKKGNCYVCGKPGHFANKC 172
+NKK K C+VCG+PGH A C
Sbjct: 496 RNKKGLQKSGNSGCFVCGQPGHRAAVC 522
>sp|P07567|GAG_MPMV Gag polyprotein OS=Mason-Pfizer monkey virus GN=gag PE=1 SV=3
Length = 657
Score = 33.9 bits (76), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 142 KKFFKNKKTTFKKKKGNCYVCGKPGHFANKCRYRKGDHKPPK 183
K F NK K+K G C+ CGK GHFA C ++ PK
Sbjct: 535 KDFLNNKN---KEKGGCCFKCGKKGHFAKNCHEHAHNNAEPK 573
>sp|Q8PBB3|T23OL_XANCP Tryptophan 2,3-dioxygenase-like protein OS=Xanthomonas campestris
pv. campestris (strain ATCC 33913 / NCPPB 528 / LMG 568)
GN=XCC1210 PE=3 SV=1
Length = 270
Score = 33.9 bits (76), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 14/21 (66%), Positives = 16/21 (76%)
Query: 61 QLRKKYIIEDAGAQNFKMAED 81
QLR +Y EDAGAQ F +AED
Sbjct: 130 QLRARYAAEDAGAQAFLLAED 150
>sp|Q4US93|T23OL_XANC8 Tryptophan 2,3-dioxygenase-like protein OS=Xanthomonas campestris
pv. campestris (strain 8004) GN=XC_3032 PE=3 SV=1
Length = 270
Score = 33.9 bits (76), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 14/21 (66%), Positives = 16/21 (76%)
Query: 61 QLRKKYIIEDAGAQNFKMAED 81
QLR +Y EDAGAQ F +AED
Sbjct: 130 QLRARYAAEDAGAQAFLLAED 150
>sp|P11365|GAG_IPMA Retrovirus-related Gag polyprotein OS=Mouse intracisternal
a-particle MIA14 GN=gag PE=4 SV=2
Length = 827
Score = 33.5 bits (75), Expect = 1.1, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 7/36 (19%)
Query: 138 QKPNKKFFKNKKTTFKKKKGNCYVCGKPGHFANKCR 173
Q N+ +N + T C+ CGKPGHF CR
Sbjct: 446 QSQNRSMSRNDQRT-------CFNCGKPGHFKKDCR 474
>sp|P05895|POL_SIVVT Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM TYO-1) GN=gag-pol PE=3 SV=2
Length = 1467
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 143 KFFKNKKTTFKKKKGNCYVCGKPGHFANKCR 173
KF ++ + +K C CGKPGH A CR
Sbjct: 409 KFGHMQRQCPEPRKMRCLKCGKPGHLAKDCR 439
>sp|Q69KL9|RZ21A_ORYSJ Serine/arginine-rich splicing factor RSZ21A OS=Oryza sativa subsp.
japonica GN=RSZ21A PE=2 SV=1
Length = 185
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 146 KNKKTTFKKKKGNCYVCGKPGHFANKCRYR 175
+ + + + CY CG+ GHFA +CR R
Sbjct: 76 RGGRDRYGSSESKCYECGETGHFARECRLR 105
>sp|P03369|POL_HV1A2 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate ARV2/SF2) GN=gag-pol PE=1 SV=3
Length = 1437
Score = 33.1 bits (74), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 16/58 (27%)
Query: 116 EKAKEITSKANIVKNEAHPSKNQKPNKKFFKNKKTTFKKKKGNCYVCGKPGHFANKCR 173
E ++T+ ANI+ + F+N++ T K C+ CGK GH A CR
Sbjct: 367 EAMSQVTNPANIMMQRGN-----------FRNQRKTVK-----CFNCGKEGHIAKNCR 408
>sp|P05399|CAPSD_CERV Probable capsid protein OS=Carnation etched ring virus GN=ORF IV
PE=3 SV=1
Length = 494
Score = 33.1 bits (74), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 134 PSKNQKP-NKKFFKNKKTTFKKKKGNCYVCGKPGHFANKCRYRKGDHK 180
P K KP +KK K K KK C+VC GH+AN+C R+ K
Sbjct: 394 PGKYFKPKDKKSEKAKYCPKGKKTCRCWVCNIEGHYANECPNRQTSEK 441
>sp|P27980|POL_SIVVG Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM3) GN=gag-pol PE=3 SV=2
Length = 1465
Score = 33.1 bits (74), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 143 KFFKNKKTTFKKKKGNCYVCGKPGHFANKCR 173
KF ++ + +K C CGKPGH A CR
Sbjct: 409 KFGHMQRQCPEPRKMRCLKCGKPGHLAKDCR 439
>sp|P33458|GAG_CAEVC Gag polyprotein OS=Caprine arthritis encephalitis virus (strain
Cork) GN=gag PE=3 SV=1
Length = 441
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 16/25 (64%), Gaps = 5/25 (20%)
Query: 154 KKKGN-----CYVCGKPGHFANKCR 173
K KGN CY CGKPGH A +CR
Sbjct: 371 KGKGNGQPQRCYNCGKPGHQARQCR 395
>sp|Q9HDB9|GAK8_HUMAN HERV-K_3q12.3 provirus ancestral Gag polyprotein OS=Homo sapiens
GN=ERVK-5 PE=1 SV=3
Length = 667
Score = 33.1 bits (74), Expect = 1.5, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 17/80 (21%)
Query: 112 IDQLEKAKEITSKANIVKNEAHPSKNQKPNKKFFKNKKTTFKKKKGNCYVCGKPGHFANK 171
I L+++ + +K NI+ N+A +KN+KP+ G C CGK H+AN+
Sbjct: 551 IGHLKRSCPVLNKQNII-NQAITAKNKKPS---------------GLCPKCGKGKHWANQ 594
Query: 172 CRYR-KGDHKPPKANLVDGE 190
C + D +P N G+
Sbjct: 595 CHSKFDKDGQPLSGNRKRGQ 614
>sp|P03349|GAG_HV1A2 Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate ARV2/SF2) GN=gag PE=3 SV=3
Length = 502
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 16/58 (27%)
Query: 116 EKAKEITSKANIVKNEAHPSKNQKPNKKFFKNKKTTFKKKKGNCYVCGKPGHFANKCR 173
E ++T+ ANI+ + F+N++ T K C+ CGK GH A CR
Sbjct: 367 EAMSQVTNPANIMMQRGN-----------FRNQRKTVK-----CFNCGKEGHIAKNCR 408
>sp|P04022|GAG_SRV1 Gag polyprotein OS=Simian retrovirus SRV-1 GN=gag PE=1 SV=3
Length = 658
Score = 32.7 bits (73), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Query: 142 KKFFKNKKTTFKKKKGNCYVCGKPGHFANKC 172
K F NK K+K G C+ CG+ GHFA C
Sbjct: 536 KDFLNNKN---KEKGGCCFKCGRKGHFAKNC 563
>sp|Q9FQ04|XRN4_ARATH 5'-3' exoribonuclease 4 OS=Arabidopsis thaliana GN=XRN4 PE=2 SV=1
Length = 947
Score = 32.7 bits (73), Expect = 1.9, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 151 TFKKKKGNCYVCGKPGHFANKCRYRKGDH 179
T+ ++ C+VCG+ GHFA+ C + G +
Sbjct: 257 TYPGQQEKCFVCGQTGHFASDCPGKSGSN 285
>sp|P27978|GAG_SIVVG Gag polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM3) GN=gag PE=3 SV=1
Length = 521
Score = 32.7 bits (73), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 143 KFFKNKKTTFKKKKGNCYVCGKPGHFANKCR 173
KF ++ + +K C CGKPGH A CR
Sbjct: 409 KFGHMQRQCPEPRKMRCLKCGKPGHLAKDCR 439
>sp|Q6K4N0|RSZ21_ORYSJ Serine/arginine-rich splicing factor RSZ21 OS=Oryza sativa subsp.
japonica GN=RSZP21 PE=2 SV=1
Length = 185
Score = 32.7 bits (73), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 159 CYVCGKPGHFANKCRYRKG 177
CY CG+ GHFA +CR R G
Sbjct: 88 CYECGETGHFARECRLRIG 106
>sp|P27973|POL_SIVV1 Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM155) GN=gag-pol PE=3 SV=2
Length = 1470
Score = 32.7 bits (73), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 143 KFFKNKKTTFKKKKGNCYVCGKPGHFANKCR 173
KF ++ + +K C CGKPGH A CR
Sbjct: 405 KFGHMQRQCPEPRKIKCLKCGKPGHLAKDCR 435
>sp|P20892|POL_HV1OY Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate OYI) GN=gag-pol PE=3 SV=3
Length = 1434
Score = 32.3 bits (72), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 5/29 (17%)
Query: 145 FKNKKTTFKKKKGNCYVCGKPGHFANKCR 173
FKN++ T K C+ CGK GH A CR
Sbjct: 382 FKNQRKTVK-----CFNCGKEGHIAKNCR 405
>sp|Q13237|KGP2_HUMAN cGMP-dependent protein kinase 2 OS=Homo sapiens GN=PRKG2 PE=1 SV=1
Length = 762
Score = 32.3 bits (72), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 50/110 (45%), Gaps = 11/110 (10%)
Query: 24 QNWIKANKVCRSTILSTLSNELYDVYSQHKFAY---------EIWAQLRKKYIIEDAGAQ 74
Q + + K + S +LY + +K+ Y E+W+ LR + ++ ++
Sbjct: 495 QEHVYSEKRILEELCSPFIVKLYRTFKDNKYVYMLLEACLGGELWSILRDRGSFDEPTSK 554
Query: 75 NFKMAEDKEVTSQIHGFHMLINDLKNENIIL-PESFMTIDQLEKAKEITS 123
F +A E +H ++ DLK EN+IL E ++ + AK+I S
Sbjct: 555 -FCVACVTEAFDYLHRLGIIYRDLKPENLILDAEGYLKLVDFGFAKKIGS 603
>sp|P20889|GAG_HV1OY Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate OYI) GN=gag PE=3 SV=3
Length = 499
Score = 32.0 bits (71), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 5/29 (17%)
Query: 145 FKNKKTTFKKKKGNCYVCGKPGHFANKCR 173
FKN++ T K C+ CGK GH A CR
Sbjct: 382 FKNQRKTVK-----CFNCGKEGHIAKNCR 405
>sp|P27536|POST_XENLA Posterior protein OS=Xenopus laevis GN=po PE=2 SV=1
Length = 555
Score = 32.0 bits (71), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
Query: 143 KFFKNKKTTFKKKKGN-----CYVCGKPGHFANKCRYRKGDH 179
+F ++ +KKK+ CY CGK GH A CR H
Sbjct: 394 EFQRHISVAYKKKQSRRFPRKCYSCGKYGHIARFCRTSANQH 435
>sp|Q7TN75|PEG10_MOUSE Retrotransposon-derived protein PEG10 OS=Mus musculus GN=Peg10 PE=1
SV=2
Length = 958
Score = 32.0 bits (71), Expect = 3.2, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 147 NKKTTFKKKKGN-CYVCGKPGHFANKCRYRKGDHKPP 182
+K+ +++K N C CG GHFA+ C + + PP
Sbjct: 333 SKEEKERRRKMNLCLYCGNGGHFADTCPAKASKNSPP 369
>sp|P12499|POL_HV1Z2 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype D (isolate Z2/CDC-Z34) GN=gag-pol PE=1 SV=3
Length = 1436
Score = 32.0 bits (71), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 10/63 (15%)
Query: 117 KAKEITSKANIVKNEAHPSKNQKPNKKFFKNKKTTFKKKKGNCYVCGKPGHFANKCR--Y 174
KA+ + + N A Q+ N FK + T K C+ CGK GH A CR
Sbjct: 360 KARVLAEAMSQATNSAAAVMMQRGN---FKGPRKTIK-----CFNCGKEGHIAKNCRAPR 411
Query: 175 RKG 177
RKG
Sbjct: 412 RKG 414
>sp|Q73368|POL_HV1B9 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (strain 89.6) GN=gag-pol PE=3 SV=3
Length = 1435
Score = 32.0 bits (71), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 5/29 (17%)
Query: 145 FKNKKTTFKKKKGNCYVCGKPGHFANKCR 173
F+N++ T K C+ CGK GH A CR
Sbjct: 383 FRNQRKTVK-----CFNCGKEGHIAKNCR 406
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.131 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,411,281
Number of Sequences: 539616
Number of extensions: 3347246
Number of successful extensions: 8886
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 68
Number of HSP's that attempted gapping in prelim test: 8647
Number of HSP's gapped (non-prelim): 309
length of query: 212
length of database: 191,569,459
effective HSP length: 112
effective length of query: 100
effective length of database: 131,132,467
effective search space: 13113246700
effective search space used: 13113246700
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (27.3 bits)