BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>045690
MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN
YLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRDL
SPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYR
HIIVNCAKKFCNYCKKPGHIIKECPTRPQNCQASQAVVAS

High Scoring Gene Products

Symbol, full name Information P value
AT1G21280 protein from Arabidopsis thaliana 4.2e-06
DDB_G0293328
Cellular nucleic acid-binding protein
gene from Dictyostelium discoideum 6.1e-05
gag
Gag polyprotein
protein from Equine infectious anemia virus (CLONE 1369) 0.00068

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  045690
        (220 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2014907 - symbol:AT1G21280 "AT1G21280" species...   125  4.2e-06   1
DICTYBASE|DDB_G0293328 - symbol:DDB_G0293328 "Cellular nu...    99  6.1e-05   1
UNIPROTKB|P69730 - symbol:gag "Gag polyprotein" species:1...   112  0.00068   1


>TAIR|locus:2014907 [details] [associations]
            symbol:AT1G21280 "AT1G21280" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002684 UniGene:At.21118 UniGene:At.69963
            EMBL:BT003899 EMBL:BT004931 EMBL:AY773814 IPI:IPI00545975
            RefSeq:NP_173550.1 ProteinModelPortal:Q84JT5 IntAct:Q84JT5
            PRIDE:Q84JT5 DNASU:838724 EnsemblPlants:AT1G21280.1 GeneID:838724
            KEGG:ath:AT1G21280 TAIR:At1g21280 InParanoid:Q84JT5 OMA:WMELSEY
            PhylomeDB:Q84JT5 Genevestigator:Q84JT5 Uniprot:Q84JT5
        Length = 237

 Score = 125 (49.1 bits), Expect = 4.2e-06, P = 4.2e-06
 Identities = 36/138 (26%), Positives = 63/138 (45%)

Query:     1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
             M W+M S+   L+ ++   +TA  MWE L++V+      K + L   +A   QG  S++ 
Sbjct:    87 MYWLMNSMTDKLLESVMYAETAHKMWEDLRRVFVPCVDLKIYQLRRRLATLRQGGDSVEE 146

Query:    61 YLSGIQNLWAKYVDMIYVQVP--------IESLADVQGVHEQSKRDQFLM--KLRPEYKA 110
             Y   +  +W +  +  Y  +P         E     +   E+ +R +FLM  KL   ++A
Sbjct:   147 YFGKLSKVWMELSE--YAPIPECKCGGCNCECTKRAEEAREKEQRYEFLMGLKLNQGFEA 204

Query:   111 ARSNLMNRDLSPSLDVCF 128
               + +M +   PSL   F
Sbjct:   205 VTTKIMFQKPPPSLHEAF 222


>DICTYBASE|DDB_G0293328 [details] [associations]
            symbol:DDB_G0293328 "Cellular nucleic acid-binding
            protein" species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc
            ion binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
            [GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR001878
            Pfam:PF00098 PROSITE:PS50158 SMART:SM00343 dictyBase:DDB_G0293328
            GO:GO:0046872 GO:GO:0008270 GO:GO:0003676 eggNOG:COG5082
            Gene3D:4.10.60.10 SUPFAM:SSF57756 EMBL:AAFI02000201
            RefSeq:XP_629203.1 ProteinModelPortal:Q54BY8 STRING:Q54BY8
            EnsemblProtists:DDB0191881 GeneID:8629162 KEGG:ddi:DDB_G0293328
            InParanoid:Q54BY8 OMA:CKEVGHI ProtClustDB:PTZ00368 Uniprot:Q54BY8
        Length = 131

 Score = 99 (39.9 bits), Expect = 6.1e-05, P = 6.1e-05
 Identities = 18/49 (36%), Positives = 26/49 (53%)

Query:   167 DMRQVQCFSCKEYRHIIVNCAK------KFCNYCKKPGHIIKECPTRPQ 209
             ++++  C+ CKE  HI  NC K      + C  C   GH+ +ECP  PQ
Sbjct:     3 EIKEKSCYKCKEVGHISRNCPKNPEAGDRACYVCNVVGHLSRECPQNPQ 51


>UNIPROTKB|P69730 [details] [associations]
            symbol:gag "Gag polyprotein" species:11670 "Equine
            infectious anemia virus (CLONE 1369)" [GO:0005515 "protein binding"
            evidence=IPI] InterPro:IPR000721 InterPro:IPR001878
            InterPro:IPR008916 InterPro:IPR008919 InterPro:IPR010999
            InterPro:IPR012344 Pfam:PF00098 Pfam:PF00607 PROSITE:PS50158
            SMART:SM00343 GO:GO:0019048 GO:GO:0046872 GO:GO:0005198
            GO:GO:0008270 GO:GO:0003676 Gene3D:4.10.60.10 SUPFAM:SSF57756
            GO:GO:0019028 EMBL:M16575 PIR:A03949 RefSeq:NP_056901.1
            ProteinModelPortal:P69730 SMR:P69730 IntAct:P69730 GeneID:1489984
            GO:GO:0019076 Gene3D:1.10.1200.30 Gene3D:1.10.150.90
            Gene3D:1.10.375.10 InterPro:IPR014834 Pfam:PF08723 SUPFAM:SSF47353
            SUPFAM:SSF47943 SUPFAM:SSF47836 Uniprot:P69730
        Length = 486

 Score = 112 (44.5 bits), Expect = 0.00068, P = 0.00068
 Identities = 40/160 (25%), Positives = 70/160 (43%)

Query:    54 GDLSIQNYLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARS 113
             G    QN   G +  + ++VD +  Q  I+S    Q + +       +     E + A  
Sbjct:   270 GKPKAQNIRQGAKEPYPEFVDRLLSQ--IKSEGHPQEISKFLTDTLTIQNANEECRNAMR 327

Query:   114 NLMNRD-LSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQ 172
             +L   D L   +  C +++   +Q++    +L   K     +A     G  KG  ++  Q
Sbjct:   328 HLRPEDTLEEKMYAC-RDIGTTKQKMM---LLA--KALQTGLAGPFKGGALKGGPLKAAQ 381

Query:   173 -CFSCKEYRHIIVNC-AKKFCNYCKKPGHIIKECPTRPQN 210
              C++C +  H+   C A K C  CK+PGH  K+C + P+N
Sbjct:   382 TCYNCGKPGHLSSQCRAPKVCFKCKQPGHFSKQCRSVPKN 421


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.132   0.402    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      220       220   0.00094  112 3  11 22  0.49    32
                                                     32  0.40    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  615 (65 KB)
  Total size of DFA:  205 KB (2115 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  22.52u 0.11s 22.63t   Elapsed:  00:00:01
  Total cpu time:  22.52u 0.11s 22.63t   Elapsed:  00:00:01
  Start:  Fri May 10 00:27:06 2013   End:  Fri May 10 00:27:07 2013

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