BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045690
(220 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|147783659|emb|CAN74794.1| hypothetical protein VITISV_041689 [Vitis vinifera]
Length = 845
Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats.
Identities = 115/214 (53%), Positives = 152/214 (71%), Gaps = 1/214 (0%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
M+W++GSV+ +V +L+P+++A+ MW YLKKVY+QDN A+ F LE+ IA + G LSIQ+
Sbjct: 66 MSWLLGSVEPHIVTHLRPHRSAQSMWAYLKKVYHQDNDARRFQLEHAIAMFQHGSLSIQD 125
Query: 61 YLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRDL 120
Y S LW +Y D++ VPI +L+ +Q +H ++RDQFLMKLRPEY++ RS+L+NR
Sbjct: 126 YYSAFLTLWHEYADLVTADVPIAALSTIQXIHATTRRDQFLMKLRPEYESVRSSLLNRSP 185
Query: 121 SPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYA-AAHGKSKGRDMRQVQCFSCKEY 179
PSLD+CF ELLREEQRL+TQ IL+Q+ A AA G+ + +QCF CKEY
Sbjct: 186 VPSLDICFGELLREEQRLSTQAILEQSHGSSGTTTVAYAAQGRGPPMHSKNLQCFCCKEY 245
Query: 180 RHIIVNCAKKFCNYCKKPGHIIKECPTRPQNCQA 213
HI C KKFC+YCKK GHIIKEC RPQN QA
Sbjct: 246 GHIAATCPKKFCSYCKKKGHIIKECRIRPQNRQA 279
>gi|359484000|ref|XP_003633051.1| PREDICTED: uncharacterized protein LOC100854333 [Vitis vinifera]
Length = 1689
Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 115/214 (53%), Positives = 152/214 (71%), Gaps = 1/214 (0%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
M+W++GSV+ +V +L+P+++A+ MW YLKKVY+QDN A+ F LE+ IA + G LSIQ+
Sbjct: 66 MSWLLGSVEPHIVTHLRPHRSAQSMWAYLKKVYHQDNDARRFQLEHAIAMFQHGSLSIQD 125
Query: 61 YLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRDL 120
Y S LW +Y D++ VPI +L+ +Q +H ++RDQFLMKLR EY++ RS+L+NR
Sbjct: 126 YYSAFLTLWHEYADLVTADVPIAALSTIQTIHATTRRDQFLMKLRLEYESVRSSLLNRSP 185
Query: 121 SPSLDVCFKELLREEQRLATQTILQQN-KMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEY 179
PSLD+CF ELLREEQRL+TQ IL+Q+ AI AA G+ + +QCF CKEY
Sbjct: 186 VPSLDICFGELLREEQRLSTQAILEQSHGSSGTAIVAYAAQGRGPPMHSKNLQCFCCKEY 245
Query: 180 RHIIVNCAKKFCNYCKKPGHIIKECPTRPQNCQA 213
HI C KKFC+YCKK GHIIKEC RPQN QA
Sbjct: 246 GHIAATCPKKFCSYCKKKGHIIKECRIRPQNRQA 279
>gi|147793835|emb|CAN71164.1| hypothetical protein VITISV_031057 [Vitis vinifera]
Length = 1303
Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 115/215 (53%), Positives = 152/215 (70%), Gaps = 2/215 (0%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
M+W++GSV+ +V +L+P+++A+ MW YLKKVY+QDN A+ F LE+ IA + G LSIQ+
Sbjct: 208 MSWLLGSVEPHIVTHLRPHRSAQSMWAYLKKVYHQDNDARRFQLEHAIAMFQHGSLSIQD 267
Query: 61 YLSGIQNLWAKYVDMIYVQVP-IESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRD 119
Y S LW +Y D++ VP I +L+ +Q +H ++RDQFLMKLRPEY++ RS+L+NR
Sbjct: 268 YYSAFLTLWHEYADLVTADVPIIATLSTIQTIHATTRRDQFLMKLRPEYESVRSSLLNRS 327
Query: 120 LSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYA-AAHGKSKGRDMRQVQCFSCKE 178
PSLD+CF ELLREEQRL+TQ IL+Q+ A AA G+ + +QCF CKE
Sbjct: 328 PVPSLDICFGELLREEQRLSTQAILEQSHGSSGTTTVAYAAQGRGPPMHSKNLQCFCCKE 387
Query: 179 YRHIIVNCAKKFCNYCKKPGHIIKECPTRPQNCQA 213
Y HI C KKFC+YCKK GHIIKEC RPQN QA
Sbjct: 388 YGHIAATCPKKFCSYCKKKGHIIKECRIRPQNRQA 422
>gi|147780419|emb|CAN67992.1| hypothetical protein VITISV_015686 [Vitis vinifera]
Length = 1308
Score = 249 bits (636), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 114/214 (53%), Positives = 151/214 (70%), Gaps = 1/214 (0%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
M+W++GSV+ +V +L+P+++A+ MW YLKKVY+QDN A+ F LE+ IA + G LSIQ+
Sbjct: 55 MSWLIGSVEPHIVTHLRPHRSAQSMWAYLKKVYHQDNDARRFQLEHAIAMFQHGSLSIQD 114
Query: 61 YLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRDL 120
Y S LW +Y D++ VPI +L+ +Q +H ++RDQFLMKL PEY++ RS+L+NR
Sbjct: 115 YYSAFLTLWHEYADLVTTDVPIAALSTIQTIHVTTRRDQFLMKLCPEYESVRSSLLNRSP 174
Query: 121 SPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYA-AAHGKSKGRDMRQVQCFSCKEY 179
PSLD+CF ELLREEQRL+TQ IL+Q+ A AA G+ + +QCF CKEY
Sbjct: 175 VPSLDICFGELLREEQRLSTQAILEQSHGSSGTTTVAYAAQGREPPMHSKNLQCFCCKEY 234
Query: 180 RHIIVNCAKKFCNYCKKPGHIIKECPTRPQNCQA 213
HI C KKFC+YCKK GHIIKEC RPQN QA
Sbjct: 235 GHIAATCPKKFCSYCKKKGHIIKECRIRPQNRQA 268
>gi|147806416|emb|CAN76550.1| hypothetical protein VITISV_031906 [Vitis vinifera]
Length = 1162
Score = 248 bits (634), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 109/208 (52%), Positives = 153/208 (73%), Gaps = 1/208 (0%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
++W++GS+ +V NL+ + TAK+MWEYL+++YNQDN A CF LE EIA ++QG+LSI+
Sbjct: 36 VSWLLGSIKPHMVNNLRSFSTAKEMWEYLRRIYNQDNNACCFQLELEIAYFTQGNLSIEQ 95
Query: 61 YLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRDL 120
Y SG NLW +Y +IY +VP E L+ +Q V+E+S+ DQFLMKLR EY+ ++ L+ R+
Sbjct: 96 YYSGFLNLWGEYSGIIYAKVPKEVLSALQTVYEESRCDQFLMKLRAEYETTQAGLLKRNP 155
Query: 121 SPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYR 180
P+LD+C ELLREEQRLATQ + Q ++H + A A + +GR+ Q+QC+SCKE+
Sbjct: 156 VPTLDICLGELLREEQRLATQAEMGQERLHSEIVNVAYA-TQGRGREKGQIQCYSCKEFG 214
Query: 181 HIIVNCAKKFCNYCKKPGHIIKECPTRP 208
HI +C K +CNYC+K GHIIKECP RP
Sbjct: 215 HIATSCTKPYCNYCRKRGHIIKECPIRP 242
>gi|147866201|emb|CAN81968.1| hypothetical protein VITISV_037079 [Vitis vinifera]
Length = 1157
Score = 233 bits (593), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 112/216 (51%), Positives = 139/216 (64%), Gaps = 18/216 (8%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
MTWI+ SV+ VLNL+PYKT MW YL VYNQDN+A+ F LEYE+A ++QG LSI+
Sbjct: 73 MTWILSSVEPHFVLNLRPYKTVATMWNYLHTVYNQDNSARRFQLEYEMANFTQGSLSIEE 132
Query: 61 YLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRDL 120
Y SG Q LW Y D++Y VP +L+ VQ VH SKRDQFLMKLRP+++ ARSNLMNR L
Sbjct: 133 YFSGFQTLWIDYSDIVYANVPAAALSVVQAVHATSKRDQFLMKLRPDFEIARSNLMNRHL 192
Query: 121 SPSLDVCFKELLREEQRLATQTILQQ--NKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKE 178
PSL+ C ELLREEQ + TQ ++ N ++AY CFSCK+
Sbjct: 193 VPSLNACLSELLREEQHIVTQATMEHRANVSAPVSVAY----------------CFSCKD 236
Query: 179 YRHIIVNCAKKFCNYCKKPGHIIKECPTRPQNCQAS 214
+ I +C KKFCNY KK GHII C RP+ Q +
Sbjct: 237 FGQIARDCPKKFCNYYKKQGHIISVCLIRPKRKQGT 272
>gi|147839099|emb|CAN61564.1| hypothetical protein VITISV_007963 [Vitis vinifera]
Length = 369
Score = 229 bits (583), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 106/213 (49%), Positives = 141/213 (66%), Gaps = 17/213 (7%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
M+W++ SV+ +V +L+P+++A+ MW YLKKVY+QDN A+ F LE+ I + G LSIQ+
Sbjct: 1 MSWLLSSVEPHIVTHLRPHRSAQSMWAYLKKVYHQDNDARRFQLEHAIVMFQHGSLSIQD 60
Query: 61 YLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRDL 120
Y S W +Y D++ VPI++L+ +Q +H + RDQFLMKLRPEY++ RS+L+NR
Sbjct: 61 YYSAFLTFWHEYADLVTADVPIDALSTIQTIHATTLRDQFLMKLRPEYESVRSSLLNRSH 120
Query: 121 SPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYR 180
PSLD+CF ELLREEQ L+TQ I++Q +HG S CF KEY
Sbjct: 121 VPSLDICFGELLREEQHLSTQAIMEQ------------SHGSSG-----TATCFCYKEYE 163
Query: 181 HIIVNCAKKFCNYCKKPGHIIKECPTRPQNCQA 213
HI C KK C+YCKK GHIIKEC RPQN QA
Sbjct: 164 HIAATCPKKLCSYCKKKGHIIKECLIRPQNRQA 196
>gi|147770281|emb|CAN67539.1| hypothetical protein VITISV_021584 [Vitis vinifera]
Length = 1652
Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 110/217 (50%), Positives = 151/217 (69%), Gaps = 7/217 (3%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
M+W++GSV+ +V +L+P+ +A+ MW YLKKVY+QDN A+ F L++ IA + G LSIQ+
Sbjct: 160 MSWLLGSVEPHIVTHLRPHCSAQSMWAYLKKVYHQDNDARRFQLDHAIAMFQHGSLSIQD 219
Query: 61 YLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRDL 120
Y S LW +Y D++ VPI +L+ +Q +H ++RDQFLMKLR +Y++ S+L+N+
Sbjct: 220 YYSTFLTLWHEYADLVTADVPIAALSTIQTIHTTTQRDQFLMKLRSKYESVCSSLLNKSH 279
Query: 121 SPSLDVCFKELLREEQRLATQTILQQNKMHDN----AIAYAAAHGKSKGRDMRQVQCFSC 176
PSLD+ F ELLR+EQRL+TQ IL+Q+ H N +AY AA G+ + +QCF C
Sbjct: 280 VPSLDIFFGELLRKEQRLSTQAILEQS--HGNYGTTTVAY-AAQGRGPRMHSKNLQCFCC 336
Query: 177 KEYRHIIVNCAKKFCNYCKKPGHIIKECPTRPQNCQA 213
KEY HI C KKFC+YCKK GHIIKEC RPQN Q
Sbjct: 337 KEYGHIAATCPKKFCSYCKKKGHIIKECRIRPQNRQT 373
>gi|147802545|emb|CAN77664.1| hypothetical protein VITISV_007221 [Vitis vinifera]
Length = 958
Score = 220 bits (561), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 111/216 (51%), Positives = 137/216 (63%), Gaps = 29/216 (13%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
MTWI+ SV+ LVLN +PYKT MW YL VYNQDN+A+ F LE E A ++QG LSI+
Sbjct: 63 MTWILSSVEPHLVLNQRPYKTVAVMWNYLHTVYNQDNSARRFQLECEKANFTQGSLSIEE 122
Query: 61 YLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRDL 120
Y + H SKRDQFLMKLRP+++ ARSN+MNR
Sbjct: 123 YFFAM--------------------------HATSKRDQFLMKLRPDFEIARSNMMNRHH 156
Query: 121 SPSLDVCFKELLREEQRLATQTILQQ--NKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKE 178
PSLDVC ELLREEQR+ TQ ++ N ++AYAA G++KG+DMR VQCFSCK+
Sbjct: 157 VPSLDVCLSELLREEQRIVTQATMEHRANVSAPVSVAYAA-QGQNKGQDMRVVQCFSCKD 215
Query: 179 YRHIIVNCAKKFCNYCKKPGHIIKECPTRPQNCQAS 214
+ HI +C KKFCNYCKK GHII CP RP+ Q +
Sbjct: 216 FDHIARDCPKKFCNYCKKQGHIISVCPIRPERKQGT 251
>gi|147846218|emb|CAN79492.1| hypothetical protein VITISV_033373 [Vitis vinifera]
Length = 2116
Score = 212 bits (540), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 102/211 (48%), Positives = 135/211 (63%), Gaps = 23/211 (10%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
M+W++GSV +V L+P+++A+ MW YLKKVY+QDN A+ F LE+ IA +
Sbjct: 885 MSWLLGSVKPHIVTYLRPHRSAQSMWAYLKKVYHQDNDARRFQLEHAIAMFQH------- 937
Query: 61 YLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRDL 120
+ VPI +L+ +Q +H ++RDQFLMKLR EY++ RS+L+NR
Sbjct: 938 ---------------VTADVPIAALSTIQTIHATTRRDQFLMKLRSEYESVRSSLLNRSH 982
Query: 121 SPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYA-AAHGKSKGRDMRQVQCFSCKEY 179
PSLD+CF ELLREEQRL+TQ IL+Q+ + A AA G+ + +QCF CKEY
Sbjct: 983 VPSLDICFGELLREEQRLSTQAILEQSHGSSGTVTVAYAAQGRGPPMHSKNLQCFCCKEY 1042
Query: 180 RHIIVNCAKKFCNYCKKPGHIIKECPTRPQN 210
HI V C KKFC+YCKK GHIIKEC RPQN
Sbjct: 1043 GHIAVTCPKKFCSYCKKKGHIIKECRIRPQN 1073
>gi|147814856|emb|CAN63612.1| hypothetical protein VITISV_032683 [Vitis vinifera]
Length = 1159
Score = 209 bits (533), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 104/214 (48%), Positives = 129/214 (60%), Gaps = 31/214 (14%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
MTWI+ SV+ LVLNL+PYKT MW YL VYNQDN+A+ F LEY +A ++QG LSI+
Sbjct: 341 MTWILSSVEPHLVLNLRPYKTVVAMWNYLHTVYNQDNSARRFQLEYXMANFTQGSLSIEE 400
Query: 61 YLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRDL 120
Y S +L+ VQ VH SKRD LMKLRP+++ ARSN+MN
Sbjct: 401 YFS--------------------ALSAVQAVHXTSKRDXXLMKLRPDFEIARSNMMNHHX 440
Query: 121 SPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYR 180
PSLD C ELL EEQ + TQ + A+G++K R MR VQCFSCK++
Sbjct: 441 XPSLDACLSELLSEEQHIVTQATXEH-----------XANGQNKXRXMRVVQCFSCKDFG 489
Query: 181 HIIVNCAKKFCNYCKKPGHIIKECPTRPQNCQAS 214
H +C KFCNYCKK GHII CP RP+ Q +
Sbjct: 490 HXARDCPXKFCNYCKKQGHIISXCPIRPERKQGT 523
>gi|147788620|emb|CAN67587.1| hypothetical protein VITISV_036279 [Vitis vinifera]
Length = 1034
Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 101/221 (45%), Positives = 137/221 (61%), Gaps = 27/221 (12%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
M+W+ GS+ +V +L+P+++A+ MW YLKKVY+QDN +CF LE+ IA +
Sbjct: 91 MSWLFGSIVPLIVTHLRPHRSAQSMWAYLKKVYHQDNDTRCFQLEHAIAMFQH------- 143
Query: 61 YLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRDL 120
VPI +L+ +Q +H ++RDQFLMKLRPEY++ RS+L+N+
Sbjct: 144 ------------------DVPIATLSTIQTIHATTRRDQFLMKLRPEYESIRSSLLNKSH 185
Query: 121 SPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYA-AAHGKSKGRDMRQVQCFSCKEY 179
PSLD+CF ELLR+EQRL+TQ IL+Q+ A AA G + + CF CKEY
Sbjct: 186 VPSLDICFGELLRKEQRLSTQAILEQSHGSSGTTTVAYAAQGHGPPMHSKNLLCFCCKEY 245
Query: 180 RHIIVNCAKKFCNYCKKPGHIIKECPTRPQNCQASQAVVAS 220
HI C KKFC+YCK+ GHIIKEC RPQN Q +QA+ S
Sbjct: 246 GHIAATCPKKFCSYCKQKGHIIKECRIRPQNRQ-TQALQTS 285
>gi|147776830|emb|CAN72410.1| hypothetical protein VITISV_014973 [Vitis vinifera]
Length = 1201
Score = 202 bits (515), Expect = 6e-50, Method: Composition-based stats.
Identities = 96/214 (44%), Positives = 132/214 (61%), Gaps = 21/214 (9%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
M+W++GS++ +V +L+P+++A+ MW YLKKVY+QDN A+ F LE+ I + G +SIQ+
Sbjct: 66 MSWLLGSMEPHIVTHLRPHRSAQSMWAYLKKVYHQDNDARRFQLEHAIVMFQHGSISIQD 125
Query: 61 YLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRDL 120
Y S LW +Y D++ VPI +L+ +Q +H ++ DQFLMKL EY++
Sbjct: 126 YYSAFLTLWHEYADLVTADVPIATLSTIQTIHATTRHDQFLMKLHLEYES---------- 175
Query: 121 SPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYA-AAHGKSKGRDMRQVQCFSCKEY 179
LLREEQRL+TQ IL+Q+ A AA G+ + +QCF CKEY
Sbjct: 176 ----------LLREEQRLSTQVILEQSHGSSGTATVAYAAQGRGPPMHSKNLQCFCCKEY 225
Query: 180 RHIIVNCAKKFCNYCKKPGHIIKECPTRPQNCQA 213
RHI C KKFC+YCKK GHIIKEC P N QA
Sbjct: 226 RHIAATCPKKFCSYCKKKGHIIKECRIHPLNRQA 259
>gi|357516265|ref|XP_003628421.1| hypothetical protein MTR_8g057760 [Medicago truncatula]
gi|355522443|gb|AET02897.1| hypothetical protein MTR_8g057760 [Medicago truncatula]
Length = 457
Score = 202 bits (513), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 98/208 (47%), Positives = 132/208 (63%), Gaps = 16/208 (7%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
M+W++GSVD ++VLNL+ YKTA MW YLKKVYNQ+N A+ F LE++ + + L
Sbjct: 65 MSWVLGSVDPNIVLNLRAYKTAATMWNYLKKVYNQNNAARRFQLEHDKSLFKHDSLFNSE 124
Query: 61 YLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRDL 120
+ S NLWA+Y +++Y + E L+ +Q VHE +KRDQFLMKLR E++ NLM+R+
Sbjct: 125 FYSQFINLWAEYTEIVYADLTSEGLSSLQSVHETTKRDQFLMKLRSEFECIWFNLMHRNP 184
Query: 121 SPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYR 180
PSLD CF +LL EEQRL TQ+I++ K+ +AY A GK+K DM QCF CK+
Sbjct: 185 VPSLDACFNDLLHEEQRLLTQSIIEDQKLPTVLVAY-VARGKTKSHDMSDFQCFCCKKLG 243
Query: 181 HIIVNCAKKFCNYCKKPGHIIKECPTRP 208
H GHI+KECP RP
Sbjct: 244 HY---------------GHILKECPIRP 256
>gi|147767344|emb|CAN71267.1| hypothetical protein VITISV_017889 [Vitis vinifera]
Length = 1576
Score = 194 bits (494), Expect = 2e-47, Method: Composition-based stats.
Identities = 96/213 (45%), Positives = 129/213 (60%), Gaps = 40/213 (18%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
M+W++GSV+ +V +L+P+++A+ M YLKKVY+QDN A+ F LE+ IA + G LSIQ+
Sbjct: 269 MSWLLGSVEPHIVTHLRPHRSAQSMXAYLKKVYHQDNDARRFQLEHAIAMFQHGSLSIQD 328
Query: 61 YLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRDL 120
Y S LW +Y D++ VPI +L+ +Q +H ++RDQFLMKLRPEY++ RS+L+NR
Sbjct: 329 YYSAFLTLWHEYADLVTADVPIAALSTIQAIHATTRRDQFLMKLRPEYESVRSSLLNRSX 388
Query: 121 SPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYR 180
PSLD+CF ELLREEQRL+TQ IL+Q +HG S
Sbjct: 389 VPSLDICFGELLREEQRLSTQAILEQ------------SHGSS----------------- 419
Query: 181 HIIVNCAKKFCNYCKKPGHIIKECPTRPQNCQA 213
K GHIIKEC RPQN QA
Sbjct: 420 -----------GXTTKKGHIIKECRIRPQNRQA 441
>gi|147838251|emb|CAN72268.1| hypothetical protein VITISV_017854 [Vitis vinifera]
Length = 972
Score = 194 bits (492), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 92/198 (46%), Positives = 129/198 (65%), Gaps = 15/198 (7%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
M+W++GSV+ +V +L+P+++A+ MW YLKK LE+ IA + LSIQ+
Sbjct: 155 MSWLLGSVEPHIVTHLRPHRSAQSMWAYLKK------------LEHAIAMFQHDSLSIQD 202
Query: 61 YLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRDL 120
Y S LW +Y D++ + VPI +L+ + +H ++RDQFLMKLRP+Y+ RS+L+NR
Sbjct: 203 YYSAFLTLWHEYADLVTMDVPIAALSTIHTIHATTRRDQFLMKLRPKYEFVRSSLLNRSS 262
Query: 121 SPSLDVCFKELLREEQRLATQTILQQNKMHDN--AIAYAAAHGKSKGRDMRQVQCFSCKE 178
PSLD+CF ELLREEQRL+TQ IL+Q+ +AY AA G+ + +QCF KE
Sbjct: 263 VPSLDICFGELLREEQRLSTQAILEQSHGSSGMATVAY-AAQGRGPPMHSKNLQCFHYKE 321
Query: 179 YRHIIVNCAKKFCNYCKK 196
Y HI C KKFC+YCKK
Sbjct: 322 YGHIAATCPKKFCSYCKK 339
>gi|147798889|emb|CAN72656.1| hypothetical protein VITISV_039672 [Vitis vinifera]
Length = 518
Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 98/216 (45%), Positives = 125/216 (57%), Gaps = 25/216 (11%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
MTWI+ SV+ LVLNL+ YKT MW YL +YNQDN+A+ F LEYE+ ++QG LSI+
Sbjct: 94 MTWILKSVEPHLVLNLRAYKTTAAMWNYLNTIYNQDNSARHFQLEYEMTNFTQGGLSIEE 153
Query: 61 YLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRDL 120
Y SG + W Y D++Y VPI +L VQ SN+MN
Sbjct: 154 YFSGFRTRWTDYSDIVYANVPIAALFTVQA----------------------SNMMNHHP 191
Query: 121 SPSLDVCFKELLREEQRLATQTILQQ--NKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKE 178
SLD C +LLREEQ + TQ ++ N ++AY AA + K RDMR VQCFSCK+
Sbjct: 192 ISSLDACLSKLLREEQHVVTQVTMEHRVNVSVPVSMAY-AAQMRHKSRDMRVVQCFSCKD 250
Query: 179 YRHIIVNCAKKFCNYCKKPGHIIKECPTRPQNCQAS 214
HI + KKFCNYCKK GHI+ CP P+ Q +
Sbjct: 251 LGHIARDFPKKFCNYCKKHGHIVSACPIWPKRKQGT 286
>gi|357439341|ref|XP_003589947.1| hypothetical protein MTR_1g042180 [Medicago truncatula]
gi|357439431|ref|XP_003589992.1| hypothetical protein MTR_1g042610 [Medicago truncatula]
gi|355478995|gb|AES60198.1| hypothetical protein MTR_1g042180 [Medicago truncatula]
gi|355479040|gb|AES60243.1| hypothetical protein MTR_1g042610 [Medicago truncatula]
Length = 298
Score = 184 bits (466), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 93/210 (44%), Positives = 126/210 (60%), Gaps = 19/210 (9%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
+TWI+ S+D ++ NL+ + TA++MW YL+++YNQDN A F LE EI Y Q
Sbjct: 36 ITWILNSIDPQMINNLRSFSTAQEMWTYLERIYNQDNAANHFQLELEIVNYKQ------- 88
Query: 61 YLSGIQNLWAKYVDMIYVQVP-IESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRD 119
++ +I+V VP SLADVQ V+ S+RDQFLMKL PE++ R L+NR+
Sbjct: 89 ----------EHSTIIHVNVPKAASLADVQEVYNTSRRDQFLMKLHPEFEVVRVALLNRN 138
Query: 120 LSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYA-AAHGKSKGRDMRQVQCFSCKE 178
PSLD C ELLREEQRL T+ + + + A + KG DMRQVQ F+CK+
Sbjct: 139 SVPSLDTCVGELLREEQRLLTRGTMSCDAFIYEPVPIAYVTQSRGKGCDMRQVQYFTCKQ 198
Query: 179 YRHIIVNCAKKFCNYCKKPGHIIKECPTRP 208
+ + NC KF NYCK+ G I +CP RP
Sbjct: 199 FGQVAPNCNIKFYNYCKQKGPFISDCPIRP 228
>gi|147828315|emb|CAN75398.1| hypothetical protein VITISV_004494 [Vitis vinifera]
Length = 236
Score = 183 bits (464), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 81/164 (49%), Positives = 115/164 (70%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
M+W++GSV+ +V +L+P+++A+ MW YLKKVY+QDN A+ F LE+ I + G LSIQ+
Sbjct: 66 MSWLLGSVEPHIVTHLQPHRSAQSMWAYLKKVYHQDNDARRFQLEHAIVMFQHGSLSIQD 125
Query: 61 YLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRDL 120
Y S LW +Y D++ VPI +L+ +Q +H ++RDQFLMKLRPEY++ RS+L+NR
Sbjct: 126 YYSAFLTLWHEYADLVTADVPIAALSTIQTIHATTRRDQFLMKLRPEYESVRSSLLNRSP 185
Query: 121 SPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSK 164
P LD+CF ELLREEQ L+TQ IL+Q+ A HG S+
Sbjct: 186 VPFLDICFGELLREEQCLSTQAILEQSHGSSGTTTVAYCHGLSR 229
>gi|147766152|emb|CAN67970.1| hypothetical protein VITISV_025093 [Vitis vinifera]
Length = 1023
Score = 179 bits (454), Expect = 7e-43, Method: Composition-based stats.
Identities = 80/164 (48%), Positives = 113/164 (68%), Gaps = 12/164 (7%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
M+W++GSV+ +V +L+P+++A+ MW YLKKVY+QDN F LE+ IA + G L IQ+
Sbjct: 7 MSWLLGSVEPHIVTHLRPHRSAQSMWAYLKKVYHQDNDVCRFRLEHAIAMFQHGSLLIQD 66
Query: 61 YLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRDL 120
Y LW +Y D++ VPI +L+ +Q +H ++RDQFLMKLRP+Y++ RS+L+NR L
Sbjct: 67 YYLAFLTLWHEYADLVTADVPIAALSTIQTIHATTRRDQFLMKLRPKYESVRSSLLNRSL 126
Query: 121 SPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSK 164
PS D+CF ELLREEQRL+TQ IL+Q +HG SK
Sbjct: 127 VPSFDICFSELLREEQRLSTQAILEQ------------SHGSSK 158
>gi|147825408|emb|CAN62271.1| hypothetical protein VITISV_010713 [Vitis vinifera]
Length = 711
Score = 179 bits (453), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 95/214 (44%), Positives = 130/214 (60%), Gaps = 31/214 (14%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
M+W++G V+ +V +L+ +++A+ MW YLKKVY+QDN A+ F LE+ IA +
Sbjct: 56 MSWLLGLVEPHIVTHLRLHRSAQSMWAYLKKVYHQDNDARRFQLEHAIAMFQ-------- 107
Query: 61 YLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRDL 120
+ VPI L+ +Q +H ++RDQFLMKL PEY++ S+L+NR
Sbjct: 108 ----------------HTNVPIAVLSTIQTIHATTQRDQFLMKLCPEYESVHSSLLNRST 151
Query: 121 SPSLDVCFKELLREEQRLATQTILQQNKMHDN--AIAYAAAHGKSKGRDM--RQVQCFSC 176
LD+ F ELLREEQ L+TQ IL+Q+ +AYAA + +G M + +QCF C
Sbjct: 152 VLCLDIFFGELLREEQCLSTQAILEQSHGSSGTATVAYAA---QRRGPPMHSKNLQCFCC 208
Query: 177 KEYRHIIVNCAKKFCNYCKKPGHIIKECPTRPQN 210
KEY HI C KKFC+Y KK GHIIKEC RPQN
Sbjct: 209 KEYGHIAATCPKKFCSYYKKGGHIIKECRIRPQN 242
>gi|147841820|emb|CAN66507.1| hypothetical protein VITISV_034008 [Vitis vinifera]
Length = 1260
Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 85/200 (42%), Positives = 116/200 (58%), Gaps = 29/200 (14%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
M+W +GSV+ +V +L+P+++A MW YLKK +
Sbjct: 126 MSWRLGSVEPHIVTHLRPHRSAHSMWAYLKK----------------------------D 157
Query: 61 YLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRDL 120
Y S LW +Y D++ VPI +L+ +Q +H ++RDQFLMKL PEY++ RS+L+NR
Sbjct: 158 YYSAFLTLWHEYADLVTTDVPITTLSTIQTIHATTRRDQFLMKLHPEYESVRSSLLNRSS 217
Query: 121 SPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYA-AAHGKSKGRDMRQVQCFSCKEY 179
PSLD+CF ELL EEQRL+TQ IL+Q+ A AA G+ + +QCF CKEY
Sbjct: 218 VPSLDICFGELLHEEQRLSTQAILEQSHGSSGTATVAYAAQGRGPPMHSKNLQCFYCKEY 277
Query: 180 RHIIVNCAKKFCNYCKKPGH 199
HI C KKFC+YCKK H
Sbjct: 278 GHIAATCPKKFCSYCKKKAH 297
>gi|147856733|emb|CAN79183.1| hypothetical protein VITISV_024134 [Vitis vinifera]
Length = 432
Score = 161 bits (408), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 87/213 (40%), Positives = 118/213 (55%), Gaps = 51/213 (23%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
M+W++G V+ +V +L+ +++A+ M YLKKVY+QDN A+ F LE+ IA + D
Sbjct: 66 MSWLIGLVEPHIVTHLRLHRSAQSMXAYLKKVYHQDNDARRFQLEHAIAMFQHAD----- 120
Query: 61 YLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRDL 120
VPI +L+ +Q +H ++RDQFLMKLRP+Y++ RS+L+NR L
Sbjct: 121 -------------------VPIAALSIIQTIHATTRRDQFLMKLRPKYESVRSSLLNRSL 161
Query: 121 SPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYR 180
PSLD+CF AY AA G+ + +QCF KEY
Sbjct: 162 IPSLDICF--------------------------AY-AAQGRGPPMHSKNLQCFCYKEYG 194
Query: 181 HIIVNCAKKFCNYCKKPGHIIKECPTRPQNCQA 213
HI KKFC+YCKK HIIKEC RPQNCQA
Sbjct: 195 HIAATYPKKFCSYCKKKSHIIKECHIRPQNCQA 227
>gi|357440373|ref|XP_003590464.1| hypothetical protein MTR_1g063980 [Medicago truncatula]
gi|355479512|gb|AES60715.1| hypothetical protein MTR_1g063980 [Medicago truncatula]
Length = 279
Score = 158 bits (400), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 81/187 (43%), Positives = 108/187 (57%), Gaps = 17/187 (9%)
Query: 22 AKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLSGIQNLWAKYVDMIYVQVP 81
A MW YLKKVYNQ+N A+ F LE++IA + Q LSI + S NLWA+Y +++Y +
Sbjct: 70 AATMWNYLKKVYNQNNAARRFQLEHDIALFKQDSLSISEFYSQFMNLWAEYTEIVYADLT 129
Query: 82 IESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRDLSPSLDVCFKELLREEQRLATQ 141
E L+ VQ VHE +KRDQFLMKLR E++ R C + L ++
Sbjct: 130 SEGLSSVQSVHETTKRDQFLMKLRSEFEGIRP-----------ISCIETLYHHWMHVSMI 178
Query: 142 TILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCAKKFCNYCKKPGHII 201
++ +N +AY A GK++ DM VQCF CK+ H NC K CNYCK+ HI+
Sbjct: 179 YYVK-----NNVLAY-VARGKTRSHDMSAVQCFCCKKLGHYASNCPNKVCNYCKQDKHIL 232
Query: 202 KECPTRP 208
KECP RP
Sbjct: 233 KECPIRP 239
>gi|147787709|emb|CAN63055.1| hypothetical protein VITISV_034230 [Vitis vinifera]
Length = 546
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 65/128 (50%), Positives = 95/128 (74%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
M+W++GSV+ +V +L+P+++ + MW YLKKVY+QDN A+ F LE+ IA + G LSIQ+
Sbjct: 80 MSWLLGSVEPHIVTHLRPHRSTQSMWAYLKKVYHQDNDARRFQLEHAIAMFQHGSLSIQD 139
Query: 61 YLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRDL 120
Y S LW +Y D++ VPI +L+ +Q +H ++RDQFLMKLRPEY++ RS+L+NR
Sbjct: 140 YYSAFLTLWHEYADLVTTDVPIAALSTIQTIHATTRRDQFLMKLRPEYESVRSSLLNRSP 199
Query: 121 SPSLDVCF 128
PSLD+CF
Sbjct: 200 VPSLDICF 207
>gi|147837075|emb|CAN63642.1| hypothetical protein VITISV_038695 [Vitis vinifera]
Length = 1069
Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats.
Identities = 72/168 (42%), Positives = 107/168 (63%), Gaps = 12/168 (7%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
M+W++GS++ +V +L+P+ +A+ MW YLKK LE+ IA + G LSIQ+
Sbjct: 57 MSWLLGSMEPHIVTHLRPHHSAQSMWAYLKK------------LEHAIAMFQHGSLSIQD 104
Query: 61 YLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRDL 120
Y LW +Y D++ VPI++L+ +Q +H ++RDQFLMKLRPEY++ S+L+NR
Sbjct: 105 YYLAFLTLWHEYADLVTTDVPIDALSTIQTIHATTRRDQFLMKLRPEYESVCSSLLNRSP 164
Query: 121 SPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDM 168
P LD+CF ELLREEQRL+TQ IL+Q+ + + S R+M
Sbjct: 165 IPFLDICFGELLREEQRLSTQAILEQSHADADYLCILKTCSVSAARNM 212
>gi|147767783|emb|CAN60452.1| hypothetical protein VITISV_011348 [Vitis vinifera]
Length = 1074
Score = 154 bits (389), Expect = 3e-35, Method: Composition-based stats.
Identities = 68/143 (47%), Positives = 98/143 (68%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
M+W++ SV+ +V +L+P+++A+ MW YLKKVY+QDN A+ F LE+ IA + G LSIQ+
Sbjct: 91 MSWLLSSVEPHIVTHLRPHRSAQFMWAYLKKVYHQDNDARRFQLEHTIAMFQHGSLSIQD 150
Query: 61 YLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRDL 120
Y S LW +Y D++ VPI +L+ +Q +H +RDQFLMKLRPEY++ RS L+NR
Sbjct: 151 YYSAFLTLWHEYSDLVIADVPIVALSTIQTIHTTIRRDQFLMKLRPEYESIRSFLLNRSP 210
Query: 121 SPSLDVCFKELLREEQRLATQTI 143
PSLD+CF + LA +I
Sbjct: 211 VPSLDICFATFATHDSPLAACSI 233
>gi|147804662|emb|CAN62381.1| hypothetical protein VITISV_037850 [Vitis vinifera]
Length = 191
Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 74/122 (60%), Positives = 89/122 (72%), Gaps = 4/122 (3%)
Query: 84 SLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRDLSPSLDVCFKELLREEQRLATQTI 143
SLA VQ VH SKRDQFLMKLRP+++ RSN+MNR PSLD C ELLREEQR+ TQ
Sbjct: 66 SLA-VQAVHATSKRDQFLMKLRPDFEIERSNMMNRHPVPSLDACLSELLREEQRIVTQAT 124
Query: 144 LQQ--NKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCAKKFCNYCKKPGHII 201
++ N +IAY AA G++KGRDMR VQCFSCK++ HI +C KKFCNYCKK G +
Sbjct: 125 MEHRANVSAPVSIAY-AAQGRNKGRDMRVVQCFSCKDFGHIARDCPKKFCNYCKKQGSSV 183
Query: 202 KE 203
+E
Sbjct: 184 RE 185
>gi|147853053|emb|CAN82768.1| hypothetical protein VITISV_037881 [Vitis vinifera]
Length = 1650
Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats.
Identities = 67/131 (51%), Positives = 86/131 (65%), Gaps = 3/131 (2%)
Query: 89 QGVHEQSKRDQFLMKLRPEYKAARSNLMNRDLSPSLDVCFKELLREEQRLATQTILQQ-- 146
+ VH +K+DQFLMKLRP+++ SN MNR PSLD C ELLREE R+ TQ ++
Sbjct: 788 RSVHATNKQDQFLMKLRPDFEITWSNTMNRHPVPSLDACLSELLREEHRIVTQATMEHWV 847
Query: 147 NKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCAKKFCNYCKKPGHIIKECPT 206
N ++AY A G++KGRDMR VQCFSCK++ HI +C KKF NY KK GHII C
Sbjct: 848 NVSAPVSMAYVA-QGQNKGRDMRVVQCFSCKDFGHIARDCPKKFYNYYKKQGHIISTCLI 906
Query: 207 RPQNCQASQAV 217
RP+ Q + +
Sbjct: 907 RPEKKQGNHTI 917
>gi|147832736|emb|CAN63748.1| hypothetical protein VITISV_009060 [Vitis vinifera]
Length = 1066
Score = 140 bits (354), Expect = 3e-31, Method: Composition-based stats.
Identities = 61/103 (59%), Positives = 74/103 (71%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
MTWI+ SV+ L+L L+PYKTA MW YL VYNQDN A+CF LEYE+A ++QG LSI+
Sbjct: 62 MTWILSSVEPHLILKLRPYKTAAAMWNYLHMVYNQDNFARCFQLEYEMANFTQGSLSIEE 121
Query: 61 YLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMK 103
Y S Q LW Y D+ Y VP+ +L+ VQ VH SKRDQFLMK
Sbjct: 122 YFSCFQTLWTDYSDIXYANVPVATLSTVQAVHATSKRDQFLMK 164
Score = 78.6 bits (192), Expect = 2e-12, Method: Composition-based stats.
Identities = 33/54 (61%), Positives = 38/54 (70%)
Query: 161 GKSKGRDMRQVQCFSCKEYRHIIVNCAKKFCNYCKKPGHIIKECPTRPQNCQAS 214
G KGRDM VQCFSCK++ HI +C KKFCNYCKK GHII C RP+ Q +
Sbjct: 165 GGEKGRDMWAVQCFSCKDFGHIARDCPKKFCNYCKKQGHIIFACLIRPKRKQGT 218
>gi|147773391|emb|CAN60272.1| hypothetical protein VITISV_016416 [Vitis vinifera]
Length = 759
Score = 140 bits (352), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 91/125 (72%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
++W++GS++ +V NL+ + AK+MWEYL+ +YNQDN A+ F LE EIA YSQG+LSI
Sbjct: 524 VSWLLGSIEPHMVNNLRCFTIAKEMWEYLRPIYNQDNNARRFQLELEIANYSQGNLSIDQ 583
Query: 61 YLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRDL 120
+ G NLW++Y +++ ++P +L+ +Q VH +S+RDQFLMKLR E++ R+ L+N D
Sbjct: 584 FYGGFLNLWSEYSSIVHAKIPQAALSALQDVHAESQRDQFLMKLRSEFETTRAGLLNHDP 643
Query: 121 SPSLD 125
SLD
Sbjct: 644 VSSLD 648
>gi|147867278|emb|CAN83290.1| hypothetical protein VITISV_018945 [Vitis vinifera]
Length = 723
Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats.
Identities = 58/128 (45%), Positives = 88/128 (68%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
++ ++ SV+ +V +L P+++A+ MW YLKKVY+QDN A+ F LE I + G LSIQ+
Sbjct: 64 ISXLLXSVEPHIVTHLXPHRSAQSMWAYLKKVYHQDNDARRFQLEPAIXMFQHGSLSIQD 123
Query: 61 YLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRDL 120
Y S LW +YVD++ VPI L+ +Q +H ++RD+FLMKL EY++ S+L+N+
Sbjct: 124 YYSAFLTLWHEYVDLVRADVPIVVLSTIQTIHATTRRDRFLMKLHLEYESVHSSLLNKSH 183
Query: 121 SPSLDVCF 128
PSLD+CF
Sbjct: 184 IPSLDICF 191
>gi|147778470|emb|CAN63029.1| hypothetical protein VITISV_014246 [Vitis vinifera]
Length = 1686
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 57/126 (45%), Positives = 75/126 (59%), Gaps = 16/126 (12%)
Query: 91 VHEQSKRDQFLMKLRPEYKAARSNLMNRDLSPSLDVCFKELLREEQRLATQTILQQ--NK 148
+H +KRDQFLMKLRP+++ RSN+MN PSLD ELLREEQ + Q ++ N
Sbjct: 1 MHATNKRDQFLMKLRPDFEIERSNMMNCHPVPSLDAYLSELLREEQYIIIQATMEHWANV 60
Query: 149 MHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCAKKFCNYCKKPGHIIKECPTRP 208
+IAYAA +G++ K++ HI +C KKFCNYCKK GHII CP R
Sbjct: 61 SAPVSIAYAA-----QGQN---------KDFGHIARDCPKKFCNYCKKQGHIISACPIRL 106
Query: 209 QNCQAS 214
+ Q +
Sbjct: 107 ERKQGT 112
>gi|147845912|emb|CAN82163.1| hypothetical protein VITISV_002378 [Vitis vinifera]
Length = 329
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/77 (54%), Positives = 52/77 (67%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
MTWI+ SV+ LVLNL+ YKT MW YL VYN DN A+CF LEYE+ ++QG L I+
Sbjct: 62 MTWILSSVEPYLVLNLRLYKTVVAMWSYLHTVYNLDNFARCFQLEYEMTNFTQGSLLIEE 121
Query: 61 YLSGIQNLWAKYVDMIY 77
Y S Q LW Y D++Y
Sbjct: 122 YFSXFQTLWTDYFDIVY 138
>gi|147790768|emb|CAN75041.1| hypothetical protein VITISV_027174 [Vitis vinifera]
Length = 1381
Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats.
Identities = 74/225 (32%), Positives = 111/225 (49%), Gaps = 21/225 (9%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQG-DLSIQ 59
+TWI + S+ L + AK W+ L K Y+ + + + L E+ + Q SI
Sbjct: 75 LTWIRNTSIPSISNLLGSFDDAKSAWDMLTKRYSTTHGSMKYQLVVELHQLRQEPGQSIN 134
Query: 60 NYLSGIQNLWAKYVDMIYVQVPI-ESLADVQ---GVHEQSKRDQFLMKLRPEYKAARSNL 115
+Y ++ +W D I + PI E D Q + ++ + +FLM L +++ R L
Sbjct: 135 DYYDQLRFIW----DQIDLSDPIWECSKDAQQYASIRDEFRLYEFLMSLHKDFEPIRGQL 190
Query: 116 MNRDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFS 175
+NR +PSLD EL+REE RLA T+ QNK++ AI + + +Q+ FS
Sbjct: 191 LNRSXAPSLDTAVNELVREEARLA--TLQAQNKLNILAITPSTPLIEQP----QQLGDFS 244
Query: 176 CKEYRHIIVNCAKKFCNYCKKPGHIIKECPTRPQNCQASQAVVAS 220
R N KKFCNYCK+PGH I+ C R S A VA+
Sbjct: 245 GSNNRRKQNN--KKFCNYCKRPGHTIETCYRR----NKSTATVAN 283
>gi|147768495|emb|CAN76067.1| hypothetical protein VITISV_001726 [Vitis vinifera]
Length = 993
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 62/99 (62%), Gaps = 3/99 (3%)
Query: 58 IQNYLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMN 117
++ Y SG Q LW Y D+++ VP +L+ VQ +H +KRDQFLMKLRP ++ A SN+MN
Sbjct: 178 LEEYFSGCQTLWTDYSDIVFANVPTITLSVVQAMHVTNKRDQFLMKLRPNFEIAWSNMMN 237
Query: 118 RDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAY 156
SLD C EL+ EEQR+ TQ ++ H N AY
Sbjct: 238 CHPVLSLDACSSELMLEEQRIITQATMEH---HANGTAY 273
>gi|147785637|emb|CAN77640.1| hypothetical protein VITISV_007622 [Vitis vinifera]
Length = 314
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 81/163 (49%), Gaps = 58/163 (35%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
M+W++GSV+ +V +L+P+++A
Sbjct: 202 MSWLLGSVEPHIVTHLQPHRSA-------------------------------------- 223
Query: 61 YLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRDL 120
Q++WA Y++ + +H ++RDQFLMKLRPEY++ RS+L+NR
Sbjct: 224 -----QSMWA------YLK---------KTIHATTRRDQFLMKLRPEYESIRSSLLNRSH 263
Query: 121 SPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKS 163
PSLD+CF ELLREEQRL+TQ IL+Q+ A HG S
Sbjct: 264 VPSLDICFGELLREEQRLSTQAILEQSHGSSXTXTVAYCHGLS 306
>gi|40644190|emb|CAC95126.1| gag-pol polyprotein [Populus deltoides]
Length = 1382
Score = 94.4 bits (233), Expect = 3e-17, Method: Composition-based stats.
Identities = 61/213 (28%), Positives = 106/213 (49%), Gaps = 15/213 (7%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
+TWI V+ S+ L Y+TAK++W++L++++ Q N AK + LE +I Q ++SIQ
Sbjct: 70 ITWINNYVEHSIGTQLAKYETAKEVWDHLQRLFTQSNFAKQYQLENDIRALHQKNMSIQE 129
Query: 61 YLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRDL 120
+ S + +LW + + V +++ EQ + QFL LR +++ R ++++R
Sbjct: 130 FYSAMTDLWDQLA--LTESVELKACGAYIERREQQRLVQFLTALRSDFEGLRGSILHRSP 187
Query: 121 SPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYR 180
PS+D ELL EE RL Q+ ++ + + + A K K Y
Sbjct: 188 LPSVDSVVSELLAEEIRL--QSYSEKGILSASNPSVLAVPSKPFSNHQN-------KPYT 238
Query: 181 HIIVNCAKKFCNYCKKPGHIIKECPTRPQNCQA 213
+ + C++CK+ GH +CP Q QA
Sbjct: 239 RVGFD----ECSFCKQKGHWKAQCPKLRQQNQA 267
>gi|147819332|emb|CAN71225.1| hypothetical protein VITISV_006367 [Vitis vinifera]
Length = 998
Score = 92.8 bits (229), Expect = 9e-17, Method: Composition-based stats.
Identities = 38/64 (59%), Positives = 48/64 (75%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
MTWI+ SV+ LVLNL+PYKT MW YL VYNQDN+A+ F LEYE+A ++ G JSI+
Sbjct: 1 MTWILSSVEPHLVLNLRPYKTVAAMWNYLHTVYNQDNSARSFQLEYEMANFTHGSJSIEE 60
Query: 61 YLSG 64
Y SG
Sbjct: 61 YFSG 64
>gi|147791601|emb|CAN61929.1| hypothetical protein VITISV_014855 [Vitis vinifera]
Length = 1271
Score = 92.8 bits (229), Expect = 1e-16, Method: Composition-based stats.
Identities = 69/218 (31%), Positives = 108/218 (49%), Gaps = 17/218 (7%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQG-DLSIQ 59
+TWI + S+ L + AK W+ L K Y+ + + + L E+ + Q SI
Sbjct: 75 LTWIRNTSIPSISNLLGSFDDAKSAWDMLTKRYSTTHGSMKYQLVVELHQLRQEPGQSIN 134
Query: 60 NYLSGIQNLWAKYVDMIYVQVPIESLA-DVQ---GVHEQSKRDQFLMKLRPEYKAARSNL 115
+Y ++ +W D I + P + D Q + ++ + +FLM L +++ R L
Sbjct: 135 DYYDQLRFIW----DQIDLSDPTWGCSTDAQQYATIRDEFRLYEFLMSLHKDFEPIRGQL 190
Query: 116 MNRDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFS 175
+NR +PSLD EL+REE RLA T+ QNK++ AI + + +Q+ FS
Sbjct: 191 LNRSPAPSLDTAVNELVREEARLA--TLXAQNKLNILAITPSTPLIEQP----QQLGDFS 244
Query: 176 CKEYRHIIVNCAKKFCNYCKKPGHIIKECPTRPQNCQA 213
R N KKFCNYCK+PGH I+ C R ++ A
Sbjct: 245 GSSNRRKQTN--KKFCNYCKRPGHTIETCYRRNKSTAA 280
>gi|147800180|emb|CAN68711.1| hypothetical protein VITISV_015847 [Vitis vinifera]
Length = 1168
Score = 90.5 bits (223), Expect = 4e-16, Method: Composition-based stats.
Identities = 68/226 (30%), Positives = 106/226 (46%), Gaps = 32/226 (14%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQG-DLSIQ 59
+TWI + S+ + + AK W+ L K Y+ + + + L E+ + Q SI
Sbjct: 144 LTWIRNTSIPSISNLMGSFDDAKSAWDMLAKRYSTTHGSLKYQLVVELHQLRQEPGQSIN 203
Query: 60 NYLSGIQNLWAKYVDMIYVQVPIESLA-DVQ---GVHEQSKRDQFLMKLRPEYKAARSNL 115
+Y ++ +W D I + P + + D Q + ++ + +FLM L +++ R L
Sbjct: 204 DYYDQLRFIW----DQIDLSDPTWTCSKDAQQYASIRDEFRLYEFLMSLHKDFEPIRGQL 259
Query: 116 MNRDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAA--------HGKSKGRD 167
+NR +PSLD EL+REE RLAT + QNK + AI + G S G
Sbjct: 260 LNRSPAPSLDTTVNELVREEARLAT--LQAQNKFNVLAITPSTPLIEQQPQQSGDSYGSS 317
Query: 168 MRQVQCFSCKEYRHIIVNCAKKFCNYCKKPGHIIKECPTRPQNCQA 213
R+ Q KKFCNYCK+PGH I+ C R ++ A
Sbjct: 318 NRRKQT-------------NKKFCNYCKRPGHTIETCYRRNKSTVA 350
>gi|359495203|ref|XP_002263507.2| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein 3
[Vitis vinifera]
Length = 1093
Score = 89.4 bits (220), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 37/62 (59%), Positives = 47/62 (75%), Gaps = 1/62 (1%)
Query: 153 AIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCAKKFCNYCKKPGHIIKECPTRPQNCQ 212
++AYAA G++KGRDM +QCFSCK++ HI +C KKFCNYCKK GHII CP RP+ Q
Sbjct: 12 SVAYAA-QGRNKGRDMHVIQCFSCKDFGHIARDCPKKFCNYCKKQGHIISTCPIRPERKQ 70
Query: 213 AS 214
+
Sbjct: 71 GT 72
>gi|147785104|emb|CAN75446.1| hypothetical protein VITISV_030925 [Vitis vinifera]
Length = 749
Score = 89.0 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 36/62 (58%), Positives = 46/62 (74%), Gaps = 1/62 (1%)
Query: 153 AIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCAKKFCNYCKKPGHIIKECPTRPQNCQ 212
++AYA G++KGRDM +QCFSCK++ HI +C KKFCNYCKK GHII CP RP+ Q
Sbjct: 12 SVAYAX-QGRNKGRDMHVIQCFSCKDFGHIARDCPKKFCNYCKKQGHIISTCPIRPERKQ 70
Query: 213 AS 214
+
Sbjct: 71 GT 72
>gi|147770282|emb|CAN65233.1| hypothetical protein VITISV_022975 [Vitis vinifera]
Length = 1277
Score = 89.0 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 66/209 (31%), Positives = 103/209 (49%), Gaps = 17/209 (8%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQG-DLSIQ 59
+TWI + S+ L + AK W+ L K Y+ + + + L E+ + Q SI
Sbjct: 176 LTWIRNTSIPSISNLLGSFDDAKSAWDMLTKRYSTTHGSMKYQLVVELHQLRQEPGQSIN 235
Query: 60 NYLSGIQNLWAKYVDMIYVQVPIESLA-DVQ---GVHEQSKRDQFLMKLRPEYKAARSNL 115
+Y ++ +W D I + P + D Q + ++ + +FLM L +++ R L
Sbjct: 236 DYYDQLRFIW----DQIDLSDPTWGCSKDAQQYASIRDEFRLYEFLMSLHKDFEPIRGQL 291
Query: 116 MNRDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFS 175
+NR +PSLD EL+R E RLA T+ QNK++ AI + + +Q+ FS
Sbjct: 292 LNRSPAPSLDTAVNELVRXEARLA--TLQAQNKLNILAITPSTPLIEQP----QQLGDFS 345
Query: 176 CKEYRHIIVNCAKKFCNYCKKPGHIIKEC 204
R N KKFCNYCK+PGH I+ C
Sbjct: 346 GSSNRRKQTN--KKFCNYCKRPGHTIETC 372
>gi|147815260|emb|CAN74430.1| hypothetical protein VITISV_010987 [Vitis vinifera]
Length = 2471
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 103/219 (47%), Gaps = 22/219 (10%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQ-GDLSIQ 59
+TWI + S+ + + AK W+ L K Y+ + + + L E+ + Q SI
Sbjct: 396 LTWIRNTSIPSISNLMGSFDDAKSAWDMLAKRYSTTHGSLKYQLVVELHQLRQEPGQSIN 455
Query: 60 NYLSGIQNLWAKYVDMIYVQVPIESLAD-VQGVHEQSKRDQFLMKLRPEYKAARSNLMNR 118
+Y ++ +W + +D+ Y A + ++ + +FLM L +++ R L+NR
Sbjct: 456 DYYDQLRFIWDQ-IDLSYPTWTCSKNAQQYASIRDEFRLYEFLMSLHKDFEPIRGQLLNR 514
Query: 119 DLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAH----GKSKGRDMRQVQCF 174
+PSLD EL+REE RLAT + QNK + AI G S G R+ Q
Sbjct: 515 SPAPSLDTAVNELVREEARLAT--LQAQNKFNVLAITPLIEQPQQSGDSYGSSNRRKQT- 571
Query: 175 SCKEYRHIIVNCAKKFCNYCKKPGHIIKECPTRPQNCQA 213
KKFCNYCK+PGH I+ C R ++ A
Sbjct: 572 ------------NKKFCNYCKRPGHTIETCYRRNKSTAA 598
>gi|147818189|emb|CAN73562.1| hypothetical protein VITISV_016481 [Vitis vinifera]
Length = 776
Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 52/70 (74%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
M+W++GSV+ +V +L+P+++A+ MW YLKKVY+QDN A+ F LE+ IA + G LSIQ+
Sbjct: 707 MSWLLGSVEPHIVTHLRPHRSAQSMWAYLKKVYHQDNDARRFQLEHAIAMFQHGSLSIQD 766
Query: 61 YLSGIQNLWA 70
Y S LWA
Sbjct: 767 YYSAFLTLWA 776
>gi|147802049|emb|CAN74984.1| hypothetical protein VITISV_035210 [Vitis vinifera]
Length = 2408
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/225 (29%), Positives = 105/225 (46%), Gaps = 31/225 (13%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQ-GDLSIQ 59
+TWI + S+ + + AK W+ L K Y+ + + + L E+ + Q SI
Sbjct: 1198 LTWIRNTSIPSISNLMGSFDDAKSAWDMLAKRYSTTHGSLKYQLVVELHQLRQEPGQSIN 1257
Query: 60 NYLSGIQNLWAKYVDMIYVQVPIES-LADVQ---GVHEQSKRDQFLMKLRPEYKAARSNL 115
+Y ++ +W D I + P + L D + + ++ + +FLM L +++ R L
Sbjct: 1258 DYYDQLRFIW----DQIDLSDPTWTCLKDAKQYASIRDEFRLYEFLMSLHKDFEPIRGQL 1313
Query: 116 MNRDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAA-------HGKSKGRDM 168
+NR +PSLD EL+REE LAT + QNK + AI + G S G
Sbjct: 1314 LNRSPAPSLDTAVNELVREEAXLAT--LQAQNKFNVLAITPSTPLIEQPQQSGDSYGSSN 1371
Query: 169 RQVQCFSCKEYRHIIVNCAKKFCNYCKKPGHIIKECPTRPQNCQA 213
R+ Q KKFCNYCK+PGH I+ C R ++ A
Sbjct: 1372 RRKQT-------------NKKFCNYCKRPGHTIETCYRRNKSTAA 1403
>gi|147817650|emb|CAN62394.1| hypothetical protein VITISV_021305 [Vitis vinifera]
Length = 1287
Score = 85.9 bits (211), Expect = 1e-14, Method: Composition-based stats.
Identities = 66/225 (29%), Positives = 104/225 (46%), Gaps = 31/225 (13%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQG-DLSIQ 59
+TWI + S+ + + AK W+ L K Y+ + + + L E+ + Q SI
Sbjct: 47 LTWIRNTSIPSISNLMGSFDDAKSAWDMLAKRYSTTHGSLKYQLVVELHQLRQEPGQSIN 106
Query: 60 NYLSGIQNLWAKYVDMIYVQVPIESLA-DVQ---GVHEQSKRDQFLMKLRPEYKAARSNL 115
+Y ++ +W D I + P + + D Q + ++ + +FLM L +++ L
Sbjct: 107 DYYDQLRFIW----DQIDLSDPTWTCSKDAQQYASIRDEFRLYEFLMSLHKDFEPIHGQL 162
Query: 116 MNRDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAA-------HGKSKGRDM 168
+NR +PSLD EL+REE RLAT + Q K + AI + G S G
Sbjct: 163 LNRSPAPSLDTAVNELVREEARLAT--LQAQKKFNVLAITPSTPLIEQPQQSGDSYGSSN 220
Query: 169 RQVQCFSCKEYRHIIVNCAKKFCNYCKKPGHIIKECPTRPQNCQA 213
R+ Q KKFCNYCK+PGH I+ C R ++ A
Sbjct: 221 RRKQT-------------NKKFCNYCKRPGHTIETCYRRNKSTAA 252
>gi|147797365|emb|CAN71436.1| hypothetical protein VITISV_039529 [Vitis vinifera]
Length = 1169
Score = 85.1 bits (209), Expect = 2e-14, Method: Composition-based stats.
Identities = 68/218 (31%), Positives = 107/218 (49%), Gaps = 17/218 (7%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQG-DLSIQ 59
+TWI + S+ L + AK W+ L K Y+ + + + L E+ + Q SI
Sbjct: 30 LTWIRNTFIPSISNLLGSFDDAKSAWBMLTKRYSTTHGSMKYQLVVELHQLRQEPGQSIN 89
Query: 60 NYLSGIQNLWAKYVDMIYVQVPIESLA-DVQ---GVHEQSKRDQFLMKLRPEYKAARSNL 115
+Y ++ +W D I + PI + + D Q + ++ + +FLM L +++ R L
Sbjct: 90 DYYDQLRFIW----DQIDLSDPIWACSKDAQQYASIRDEFRLYEFLMSLHKDFEPIRGQL 145
Query: 116 MNRDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFS 175
+N + +PSLD EL+REE LA T+ QNK++ AI + + +Q FS
Sbjct: 146 LNCNPAPSLDTXVNELVREEAXLA--TLQAQNKLNVLAITPSTPLIEQP----QQFGDFS 199
Query: 176 CKEYRHIIVNCAKKFCNYCKKPGHIIKECPTRPQNCQA 213
R N KKF NYCK+PGH IK C R ++ A
Sbjct: 200 GSSDRRKQTN--KKFYNYCKRPGHTIKTCYRRNKSTAA 235
>gi|449450638|ref|XP_004143069.1| PREDICTED: uncharacterized protein LOC101211757 [Cucumis sativus]
Length = 331
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 93/205 (45%), Gaps = 23/205 (11%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQ-GDLSIQ 59
+TW+ + ++ + AK +W++L + A + L + +Q S+
Sbjct: 70 ITWLGNTSIPAIHAQFDAFDDAKILWDFLSTRFKSIGLAHYYQLHSTLVNLNQDSGQSVN 129
Query: 60 NYLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRD 119
YL+ +Q +W + L + + + LM LRPEY++ R+ L++R+
Sbjct: 130 EYLAVLQPIWTQ-------------LDQANISKDHLRLIKVLMGLRPEYESVRAALLHRN 176
Query: 120 LSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEY 179
PSLD +E+L EE+RL + Q + + A+ + ++ +M C +CK
Sbjct: 177 PLPSLDAAIQEILFEEKRLGINSTKQSD------VVLASTYTPNRAANMF---CKNCKLS 227
Query: 180 RHIIVNCAKKFCNYCKKPGHIIKEC 204
H NC K C YC K GHI+ C
Sbjct: 228 GHKFSNCPKIECRYCHKHGHILDNC 252
>gi|449436018|ref|XP_004135791.1| PREDICTED: uncharacterized protein LOC101211570 [Cucumis sativus]
gi|449442445|ref|XP_004138992.1| PREDICTED: uncharacterized protein LOC101222551 [Cucumis sativus]
gi|449446153|ref|XP_004140836.1| PREDICTED: uncharacterized protein LOC101212068 [Cucumis sativus]
gi|449448868|ref|XP_004142187.1| PREDICTED: uncharacterized protein LOC101221851 [Cucumis sativus]
gi|449448870|ref|XP_004142188.1| PREDICTED: uncharacterized protein LOC101222325 [Cucumis sativus]
gi|449460832|ref|XP_004148148.1| PREDICTED: uncharacterized protein LOC101214339 [Cucumis sativus]
gi|449461011|ref|XP_004148237.1| PREDICTED: uncharacterized protein LOC101217769 [Cucumis sativus]
gi|449463533|ref|XP_004149488.1| PREDICTED: uncharacterized protein LOC101217687 [Cucumis sativus]
gi|449468630|ref|XP_004152024.1| PREDICTED: uncharacterized protein LOC101209650 [Cucumis sativus]
Length = 529
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 93/205 (45%), Gaps = 23/205 (11%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQ-GDLSIQ 59
+TW+ + ++ + AK +W++L + A + L + +Q S+
Sbjct: 70 ITWLGNTSIPAIHAQFDAFDDAKILWDFLSTRFKSIGLAHYYQLHSTLVNLNQDSGQSVN 129
Query: 60 NYLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRD 119
YL+ +Q +W + L + + + LM LRPEY++ R+ L++R+
Sbjct: 130 EYLAVLQLIWTQ-------------LDQANISKDHLRLIKVLMGLRPEYESVRAALLHRN 176
Query: 120 LSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEY 179
PSLD +E+L EE+RL + Q + + A+ + ++ +M C +CK
Sbjct: 177 PLPSLDAAIQEILFEERRLGINSTKQPD------VVLASTYTPNRAANMF---CKNCKLS 227
Query: 180 RHIIVNCAKKFCNYCKKPGHIIKEC 204
H NC K C YC K GHI+ C
Sbjct: 228 GHKFSNCPKIECRYCHKHGHILDNC 252
>gi|449465198|ref|XP_004150315.1| PREDICTED: uncharacterized protein LOC101213701 [Cucumis sativus]
Length = 306
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 95/206 (46%), Gaps = 25/206 (12%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDL--SI 58
+TW+ + ++ + AK +W++L + A + L + +Q D+ S+
Sbjct: 45 ITWLGNTSIPAIHAQFDAFDDAKILWDFLSTRFKSIGLAHYYQLHSTLVNLNQ-DIGQSV 103
Query: 59 QNYLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNR 118
YL+ +Q +W + L + + + LM LRPEY++ R+ L++R
Sbjct: 104 NEYLAVLQPIWTQ-------------LDQANISKDHLRLIKVLMGLRPEYESVRAALLHR 150
Query: 119 DLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKE 178
+ PSLD +E+L EE+RL + Q + + A+ + ++ +M C +CK
Sbjct: 151 NPLPSLDAAIQEILFEEKRLGINSTKQSD------VVLASTYTPNRAANMF---CKNCKL 201
Query: 179 YRHIIVNCAKKFCNYCKKPGHIIKEC 204
H NC K C YC K GHI+ C
Sbjct: 202 SGHKFSNCPKIECRYCHKHGHILDNC 227
>gi|147783627|emb|CAN68148.1| hypothetical protein VITISV_035665 [Vitis vinifera]
Length = 1813
Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 99/209 (47%), Gaps = 16/209 (7%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
++W+ +V+ + + KTA+++W L+ ++Q N F ++ IA SQG +++
Sbjct: 372 LSWLTHAVESDIAEGIIHAKTAREVWVDLRDQFSQKNAPAVFQIQKSIATMSQGTMTVAA 431
Query: 61 YLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRD---QFLMKLRPEYKAARSNLMN 117
Y + I+ LW ++ + P+ + Q EQ + D QFLM L YKA RSN++
Sbjct: 432 YFTKIKALWD---ELETYRSPL-TCNQRQAHLEQREEDRLMQFLMGLNESYKAVRSNILM 487
Query: 118 RDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCK 177
P++ + +++EE Q + + +IA AA G KG + RQ C C
Sbjct: 488 MSPLPNVRQAYSLIVQEEM----QRQVSSEPTENFSIA-AAVPG--KGGNPRQKMCDHCN 540
Query: 178 EYRHIIVNC--AKKFCNYCKKPGHIIKEC 204
H I C K C +C K GH C
Sbjct: 541 RSGHTIDECRTLKFHCKFCDKRGHTEDRC 569
>gi|359477310|ref|XP_003631962.1| PREDICTED: uncharacterized protein LOC100855226 [Vitis vinifera]
Length = 1011
Score = 79.3 bits (194), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 99/218 (45%), Gaps = 5/218 (2%)
Query: 2 TWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNY 61
TW++G++ + + ++ K A+ MW L++ ++ NT + F++E I +QG +I ++
Sbjct: 100 TWLLGAISKEISNSVIHCKDARTMWLELQERFSHTNTVQLFNIENAIHECAQGTGTITSF 159
Query: 62 LSGIQNLWAKYVDMI-YVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRDL 120
+ ++ LW + + + + A+V+ E K +FLM+L Y RSN++ D
Sbjct: 160 FTKLKGLWDEKDALCGFPPCTCATAAEVKTYMETQKTMKFLMRLGDNYATVRSNIIGMDP 219
Query: 121 SPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAH-GKSKGRDMRQVQCFSCKEY 179
P+++ + LR E++ + + + A A++ + R+V+C C
Sbjct: 220 LPTVNKAYAMALRHEKQAEASN--GKVAVPNEASAFSVRKLDQDPNTTEREVKCEKCNMT 277
Query: 180 RHIIVNCAKKF-CNYCKKPGHIIKECPTRPQNCQASQA 216
H NC C YC GH C R Q
Sbjct: 278 NHSTKNCRAHLKCTYCGGKGHTYDYCRRRKNTMGGGQG 315
>gi|357448513|ref|XP_003594532.1| Zinc finger protein GIS2 [Medicago truncatula]
gi|355483580|gb|AES64783.1| Zinc finger protein GIS2 [Medicago truncatula]
Length = 499
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 59/110 (53%), Gaps = 8/110 (7%)
Query: 99 QFLMKLRPEYKAARSNLMNRDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAA 158
Q LM LRPEY+A R++L++R+ PSLD +E++ EE RL L + D A+A
Sbjct: 50 QVLMTLRPEYEAVRASLLHRNPLPSLDTAIQEIIFEETRLN----LDKTPQMDAALATT- 104
Query: 159 AHGKSKGRDMRQVQCFSCKEYRHIIVNCAKKFCNYCKKPGHIIKECPTRP 208
+ + + C +C H+ NC C YC GHII+ CPTRP
Sbjct: 105 ---RFSHQKLNHHPCKNCNRTGHVFGNCPTIECRYCHGIGHIIENCPTRP 151
>gi|147788164|emb|CAN71595.1| hypothetical protein VITISV_010143 [Vitis vinifera]
Length = 1523
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 98/218 (44%), Gaps = 5/218 (2%)
Query: 2 TWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNY 61
TW++G++ + + ++ K AK MW L++ ++ NT + F++E I +QG ++ ++
Sbjct: 100 TWLLGAISKEISNSVIHCKDAKTMWLELQERFSHTNTVQLFNIENAIHECAQGTGTVTSF 159
Query: 62 LSGIQNLWAKYVDMI-YVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRDL 120
+ ++ LW + + + + A+V+ E K +FLM L Y RSN++ D
Sbjct: 160 FTKLKGLWDEKDALCGFPPCTCATAAEVKTYMETQKTMKFLMGLGDNYATVRSNIIGMDP 219
Query: 121 SPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAH-GKSKGRDMRQVQCFSCKEY 179
P+++ + LR E++ + + + A A++ + R+V+C C
Sbjct: 220 LPTVNKAYAMALRHEKQAEASN--GKVAVPNEASAFSVRKLDQDPNTTEREVKCEKCNMT 277
Query: 180 RHIIVNCAKKF-CNYCKKPGHIIKECPTRPQNCQASQA 216
H NC C YC GH C R Q
Sbjct: 278 NHSTKNCRAHLKCTYCGGKGHTYDYCRRRKNTMGGGQG 315
>gi|449484623|ref|XP_004156933.1| PREDICTED: uncharacterized protein LOC101232480 [Cucumis sativus]
Length = 335
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 91/204 (44%), Gaps = 21/204 (10%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
+TW+ + ++ + AK +W++L + A + L + +Q D+
Sbjct: 74 ITWLGNTSIPAIHAQFDAFDDAKKLWDFLSTRFKSIGLAHYYQLHNTLVNLNQ-DIG--- 129
Query: 61 YLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRDL 120
+ N+W + SL + + + LM LRPEY++ R+ L++R+
Sbjct: 130 --QSVMNIWQFFNPFGL------SLTKRASAKKHLRLIKVLMGLRPEYESVRAALLHRNP 181
Query: 121 SPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYR 180
PSLD +E+L EE+RL + Q + + A+ + ++ +M C +CK
Sbjct: 182 LPSLDAAIQEILFEEKRLGINSTKQSD------VVLASTYTPNRAANMF---CKNCKLSG 232
Query: 181 HIIVNCAKKFCNYCKKPGHIIKEC 204
H NC K C YC K GHI+ C
Sbjct: 233 HKFSNCPKIECRYCHKHGHILDNC 256
>gi|147769406|emb|CAN70229.1| hypothetical protein VITISV_024789 [Vitis vinifera]
Length = 1472
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 98/211 (46%), Gaps = 26/211 (12%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVY-NQDNTAKCFHLEYEIARYSQGDLSIQ 59
M+W++ S++ + N + TAKD+W+ K+ Y + +NT++ F +E + + QG+ S+
Sbjct: 88 MSWLINSMNNDIGENFLLFGTAKDIWDAAKETYSSSENTSELFQVESALHDFRQGEQSVT 147
Query: 60 NYLSGIQNLWAKYVDMIYVQVP--IESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMN 117
Y + + W + +D+ + A + + EQ + +F + L E R +M
Sbjct: 148 QYYNTLTRYWQQ-LDLFETHSWKCSDDAATYRQIMEQKRLFKFFLGLNRELDDVRGRIMG 206
Query: 118 RDLSPSLDVCFKELLREEQRLATQTILQQNKMHD----NAIAYAAAHGKSKGRDMRQVQC 173
PSL F E+ REE R + ++ +K +A A AA S G D ++
Sbjct: 207 IKPLPSLREAFSEVRREESR---KKVMMGSKEQPAPTLDASALAARSFNSSGGDRQKRD- 262
Query: 174 FSCKEYRHIIVNCAKKFCNYCKKPGHIIKEC 204
+ +C+YCKKPGH + C
Sbjct: 263 --------------RPWCDYCKKPGHYKETC 279
>gi|147862536|emb|CAN81504.1| hypothetical protein VITISV_026577 [Vitis vinifera]
Length = 493
Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 98/211 (46%), Gaps = 26/211 (12%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVY-NQDNTAKCFHLEYEIARYSQGDLSIQ 59
M+W++ S++ + N + TAKD+W+ K+ Y + +NT++ F +E + + QG+ S+
Sbjct: 88 MSWLINSMNNDIGENFLLFGTAKDIWDATKETYSSSENTSELFQVESALHDFRQGEQSVT 147
Query: 60 NYLSGIQNLWAKYVDMIYVQVP--IESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMN 117
Y + + W + +D+ + A + + EQ + +F + L E R +M
Sbjct: 148 QYYNTLTRYWQQ-LDLFETHSWKCSDDAATYRQIVEQKRLFKFFLGLNRELDDVRGRIMG 206
Query: 118 RDLSPSLDVCFKELLREEQRLATQTILQQNKMHD----NAIAYAAAHGKSKGRDMRQVQC 173
PSL F E+ REE R + ++ +K +A A AA S G D ++
Sbjct: 207 IKPLPSLREAFSEVRREESR---KKVMMGSKEQPAPTLDASALAARSFNSSGGDRQKRD- 262
Query: 174 FSCKEYRHIIVNCAKKFCNYCKKPGHIIKEC 204
+ +C+YCKKPGH + C
Sbjct: 263 --------------RPWCDYCKKPGHYKETC 279
>gi|147859169|emb|CAN83937.1| hypothetical protein VITISV_042335 [Vitis vinifera]
Length = 641
Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 98/211 (46%), Gaps = 26/211 (12%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVY-NQDNTAKCFHLEYEIARYSQGDLSIQ 59
M+W++ S++ + N + TAKD+W+ K+ Y + +NT++ F +E + + QG+ S+
Sbjct: 88 MSWLINSMNNDIGENFLLFGTAKDIWDAAKETYSSSENTSELFQVESALHDFRQGEQSVT 147
Query: 60 NYLSGIQNLWAKYVDMIYVQVP--IESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMN 117
Y + + W + +D+ + A + + EQ + +F + L E R +M
Sbjct: 148 QYYNTLTRYWQQ-LDLFETHSWKCSDDAATYRQIVEQKRLFKFFLGLNRELDDVRGRIMG 206
Query: 118 RDLSPSLDVCFKELLREEQRLATQTILQQNKMHD----NAIAYAAAHGKSKGRDMRQVQC 173
PSL F E+ REE R + ++ +K +A A AA S G D ++
Sbjct: 207 IKPLPSLREAFSEVRREESR---KKVMMGSKEQPAPTLDASALAARSFNSSGGDRQKRD- 262
Query: 174 FSCKEYRHIIVNCAKKFCNYCKKPGHIIKEC 204
+ +C+YCKKPGH + C
Sbjct: 263 --------------RPWCDYCKKPGHYKETC 279
>gi|147854850|emb|CAN78598.1| hypothetical protein VITISV_001332 [Vitis vinifera]
Length = 1701
Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 98/211 (46%), Gaps = 26/211 (12%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVY-NQDNTAKCFHLEYEIARYSQGDLSIQ 59
M+W++ S++ + N + TAKD+W+ K+ Y + +NT++ F +E + + QG+ S+
Sbjct: 335 MSWLINSMNNDIGENFLLFGTAKDIWDAAKETYSSSENTSELFQVESALHDFRQGEQSVT 394
Query: 60 NYLSGIQNLWAKYVDMIYVQVP--IESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMN 117
Y + + W + +D+ + A + + EQ + +F + L E R +M
Sbjct: 395 QYYNTLTRYWQQ-LDLFETHSWKCSDDAATYRQIVEQKRLFKFFLGLNRELDDVRGRIMG 453
Query: 118 RDLSPSLDVCFKELLREEQRLATQTILQQNKMHD----NAIAYAAAHGKSKGRDMRQVQC 173
PSL F E+ REE R + ++ +K +A A AA S G D ++
Sbjct: 454 IKPLPSLREAFSEVRREESR---KKVMMGSKEQPAPTLDASALAARSFNSSGGDRQKRD- 509
Query: 174 FSCKEYRHIIVNCAKKFCNYCKKPGHIIKEC 204
+ +C+YCKKPGH + C
Sbjct: 510 --------------RPWCDYCKKPGHYKETC 526
>gi|147820612|emb|CAN72103.1| hypothetical protein VITISV_010290 [Vitis vinifera]
Length = 873
Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 98/211 (46%), Gaps = 26/211 (12%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVY-NQDNTAKCFHLEYEIARYSQGDLSIQ 59
M+W++ S++ + N + TAKD+W+ K+ Y + +NT++ F +E + + QG+ S+
Sbjct: 390 MSWLINSMNNDIGENFLLFGTAKDIWDAAKETYSSSENTSELFQVESALHDFRQGEQSVT 449
Query: 60 NYLSGIQNLWAKYVDMIYVQVP--IESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMN 117
Y + + W + +D+ + A + + EQ + +F + L E R +M
Sbjct: 450 QYYNTLTRYWQQ-LDLFETHSWKCSDDAATYRQIVEQKRLFKFFLGLNRELDDVRGRIMG 508
Query: 118 RDLSPSLDVCFKELLREEQRLATQTILQQNKMHD----NAIAYAAAHGKSKGRDMRQVQC 173
PSL F E+ REE R + ++ +K +A A AA S G D ++
Sbjct: 509 IKPLPSLREAFSEVRREESR---KKVMMGSKEQPAPTLDASALAARSFNSSGGDRQKRD- 564
Query: 174 FSCKEYRHIIVNCAKKFCNYCKKPGHIIKEC 204
+ +C+YCKKPGH + C
Sbjct: 565 --------------RPWCDYCKKPGHYKETC 581
>gi|147841351|emb|CAN68974.1| hypothetical protein VITISV_002746 [Vitis vinifera]
Length = 852
Score = 76.3 bits (186), Expect = 9e-12, Method: Composition-based stats.
Identities = 57/173 (32%), Positives = 83/173 (47%), Gaps = 17/173 (9%)
Query: 50 RYSQGDLSIQNYLSGIQNLWA------KYVDMIYVQVPIESLADVQ---GVHEQSKRDQF 100
R S DL I+ L I + ++V YV S+ Q + ++ + +F
Sbjct: 58 RSSSADLHIRGNLVAIGARTSFSLPRQRHVSPSYVTTADASVPHAQQYASIXDEFRLYEF 117
Query: 101 LMKLRPEYKAARSNLMNRDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAH 160
LM L +++ R L+NR PSLD EL+REE RLA T+ QNK++ I +
Sbjct: 118 LMSLHKDFEPIRGQLLNRSPXPSLDTAVNELVREEARLA--TLQAQNKLNVLVITPSTPL 175
Query: 161 GKSKGRDMRQVQCFSCKEYRHIIVNCAKKFCNYCKKPGHIIKECPTRPQNCQA 213
+ +Q+ FS R N KKFCNYCK+PGH I+ C R ++ A
Sbjct: 176 IEQP----QQLGDFSGSGNRRKQTN--KKFCNYCKRPGHTIETCYHRNKSTAA 222
>gi|147860087|emb|CAN82928.1| hypothetical protein VITISV_025045 [Vitis vinifera]
Length = 1468
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 98/211 (46%), Gaps = 26/211 (12%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVY-NQDNTAKCFHLEYEIARYSQGDLSIQ 59
M+W++ S++ + N + TAKD+W+ K+ Y + +NT++ F +E + + QG+ S+
Sbjct: 88 MSWLINSMNNDIGENFLLFGTAKDIWDAAKETYSSSENTSELFQVESALHDFRQGEQSVT 147
Query: 60 NYLSGIQNLWAKYVDMIYVQVP--IESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMN 117
Y + + W + +D+ + A + + EQ + +F + L E R +M
Sbjct: 148 QYYNTLTRYWQQ-LDLFETHSWKCSDDAATYRQIVEQKRLFKFFLGLNRELDDVRGRIMG 206
Query: 118 RDLSPSLDVCFKELLREEQRLATQTILQQNKMHD----NAIAYAAAHGKSKGRDMRQVQC 173
PSL F E+ REE R + ++ +K +A A AA S G D ++
Sbjct: 207 IKPLPSLREAFSEVRREESR---KKVMMGSKEQPAPTLDASALAARSFNSSGGDRQKRD- 262
Query: 174 FSCKEYRHIIVNCAKKFCNYCKKPGHIIKEC 204
+ +C+YCKKPGH + C
Sbjct: 263 --------------RPWCDYCKKPGHYKETC 279
>gi|147816056|emb|CAN61541.1| hypothetical protein VITISV_025243 [Vitis vinifera]
Length = 641
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 98/211 (46%), Gaps = 26/211 (12%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVY-NQDNTAKCFHLEYEIARYSQGDLSIQ 59
M+W++ S++ + N + TAKD+W+ K+ Y + +NT++ F +E + + QG+ S+
Sbjct: 323 MSWLINSMNNDIGENFLLFGTAKDIWDAAKETYSSSENTSELFQVESALHDFRQGEQSVT 382
Query: 60 NYLSGIQNLWAKYVDMIYVQVP--IESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMN 117
Y + + W + +D+ + A + + EQ + +F + L E R +M
Sbjct: 383 QYYNTLTRYWQQ-LDLFETHSWKCSDDAATYRQIVEQKRLFKFFLGLNRELDDVRGRIMG 441
Query: 118 RDLSPSLDVCFKELLREEQRLATQTILQQNKMHD----NAIAYAAAHGKSKGRDMRQVQC 173
PSL F E+ REE R + ++ +K +A A AA S G D ++
Sbjct: 442 IKPLPSLREAFSEVRREESR---KKVMMGSKEQPAPTLDASALAARSFNSSGGDRQKRD- 497
Query: 174 FSCKEYRHIIVNCAKKFCNYCKKPGHIIKEC 204
+ +C+YCKKPGH + C
Sbjct: 498 --------------RPWCDYCKKPGHYKETC 514
>gi|147858526|emb|CAN81385.1| hypothetical protein VITISV_012324 [Vitis vinifera]
Length = 1369
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 98/211 (46%), Gaps = 26/211 (12%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVY-NQDNTAKCFHLEYEIARYSQGDLSIQ 59
M+W++ S++ + N + TAKD+W+ K+ Y + +NT++ F +E + + QG+ S+
Sbjct: 88 MSWLINSMNNDIGENFLLFGTAKDIWDAAKETYSSSENTSELFQVESALHDFRQGEQSVT 147
Query: 60 NYLSGIQNLWAKYVDMIYVQVP--IESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMN 117
Y + + W + +D+ + A + + EQ + +F + L E R +M
Sbjct: 148 QYYNTLTRYWQQ-LDLFETHSWKCSDDAATYRQIVEQKRLFKFFLGLNRELDDVRGRIMG 206
Query: 118 RDLSPSLDVCFKELLREEQRLATQTILQQNKMHD----NAIAYAAAHGKSKGRDMRQVQC 173
PSL F E+ REE R + ++ +K +A A AA S G D ++
Sbjct: 207 IKPLPSLREAFSEVRREESR---KKVMMGSKEQPAPTLDASALAARSFNSSGGDRQKRD- 262
Query: 174 FSCKEYRHIIVNCAKKFCNYCKKPGHIIKEC 204
+ +C+YCKKPGH + C
Sbjct: 263 --------------RPWCDYCKKPGHYKETC 279
>gi|147795014|emb|CAN76326.1| hypothetical protein VITISV_014220 [Vitis vinifera]
Length = 1112
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 98/211 (46%), Gaps = 26/211 (12%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVY-NQDNTAKCFHLEYEIARYSQGDLSIQ 59
M+W++ S++ + N + TAKD+W+ K+ Y + +NT++ F +E + + QG+ S+
Sbjct: 20 MSWLINSMNNDIGENFLLFGTAKDIWDAAKETYSSSENTSELFQVESALHDFRQGEQSVT 79
Query: 60 NYLSGIQNLWAKYVDMIYVQVP--IESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMN 117
Y + + W + +D+ + A + + EQ + +F + L E R +M
Sbjct: 80 QYYNTLTRYWQQ-LDLFETHSWKCSDDAATYRQIVEQKRLFKFFLGLNRELDDVRGRIMG 138
Query: 118 RDLSPSLDVCFKELLREEQRLATQTILQQNKMHD----NAIAYAAAHGKSKGRDMRQVQC 173
PSL F E+ REE R + ++ +K +A A AA S G D ++
Sbjct: 139 IKPLPSLREAFSEVRREESR---KKVMMGSKEQPAPTLDASALAARSFNSSGGDRQKRD- 194
Query: 174 FSCKEYRHIIVNCAKKFCNYCKKPGHIIKEC 204
+ +C+YCKKPGH + C
Sbjct: 195 --------------RPWCDYCKKPGHYKETC 211
>gi|147853411|emb|CAN82302.1| hypothetical protein VITISV_013932 [Vitis vinifera]
Length = 461
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 98/211 (46%), Gaps = 26/211 (12%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVY-NQDNTAKCFHLEYEIARYSQGDLSIQ 59
M+W++ S++ + N + TAKD+W+ K+ Y + +NT++ F +E + + QG+ S+
Sbjct: 88 MSWLINSMNNDIGENFLLFGTAKDIWDAAKETYSSSENTSELFQVESALHDFRQGEQSVT 147
Query: 60 NYLSGIQNLWAKYVDMIYVQVP--IESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMN 117
Y + + W + +D+ + A + + EQ + +F + L E R +M
Sbjct: 148 QYYNTLTRYWQQ-LDLFETHSWKCSDDAATYRQIVEQKRLFKFFLGLNRELDDVRGRIMG 206
Query: 118 RDLSPSLDVCFKELLREEQRLATQTILQQNKMHD----NAIAYAAAHGKSKGRDMRQVQC 173
PSL F E+ REE R + ++ +K +A A AA S G D ++
Sbjct: 207 IKPLPSLREAFSEVRREESR---KKVMMGSKEQPAPTLDASALAARSFNSSGGDRQKRD- 262
Query: 174 FSCKEYRHIIVNCAKKFCNYCKKPGHIIKEC 204
+ +C+YCKKPGH + C
Sbjct: 263 --------------RPWCDYCKKPGHYKETC 279
>gi|147784447|emb|CAN63881.1| hypothetical protein VITISV_039357 [Vitis vinifera]
Length = 1611
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 98/211 (46%), Gaps = 26/211 (12%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVY-NQDNTAKCFHLEYEIARYSQGDLSIQ 59
M+W++ S++ + N + TAKD+W+ K+ Y + +NT++ F +E + + QG+ S+
Sbjct: 93 MSWLINSMNNDIGENFLLFGTAKDIWDAAKETYSSSENTSELFQVESALHDFRQGEQSVT 152
Query: 60 NYLSGIQNLWAKYVDMIYVQVP--IESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMN 117
Y + + W + +D+ + A + + EQ + +F + L E R +M
Sbjct: 153 QYYNTLTRYWQQ-LDLFETHSWKCSDDAATYRQIVEQKRLFKFFLGLNRELDDVRGRIMG 211
Query: 118 RDLSPSLDVCFKELLREEQRLATQTILQQNKMHD----NAIAYAAAHGKSKGRDMRQVQC 173
PSL F E+ REE R + ++ +K +A A AA S G D ++
Sbjct: 212 IKPLPSLREAFSEVRREESR---KKVMMGSKEQPAPTLDASALAARSFNSSGGDRQKRD- 267
Query: 174 FSCKEYRHIIVNCAKKFCNYCKKPGHIIKEC 204
+ +C+YCKKPGH + C
Sbjct: 268 --------------RPWCDYCKKPGHYKETC 284
>gi|147807366|emb|CAN72886.1| hypothetical protein VITISV_019713 [Vitis vinifera]
Length = 1504
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 98/211 (46%), Gaps = 26/211 (12%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVY-NQDNTAKCFHLEYEIARYSQGDLSIQ 59
M+W++ S++ + N + TAKD+W+ K+ Y + +NT++ F +E + + QG+ S+
Sbjct: 279 MSWLINSMNNDIGENFLLFGTAKDIWDAAKETYSSSENTSELFQVESALHDFRQGEQSVT 338
Query: 60 NYLSGIQNLWAKYVDMIYVQVP--IESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMN 117
Y + + W + +D+ + A + + EQ + +F + L E R +M
Sbjct: 339 QYYNTLTRYWQQ-LDLFETHSWKCSDDAATYRQIVEQKRLFKFFLGLNRELDDVRGRIMG 397
Query: 118 RDLSPSLDVCFKELLREEQRLATQTILQQNKMHD----NAIAYAAAHGKSKGRDMRQVQC 173
PSL F E+ REE R + ++ +K +A A AA S G D ++
Sbjct: 398 IKPLPSLREAFSEVRREESR---KKVMMGSKEQPAPTLDASALAARSFNSSGGDRQKRD- 453
Query: 174 FSCKEYRHIIVNCAKKFCNYCKKPGHIIKEC 204
+ +C+YCKKPGH + C
Sbjct: 454 --------------RPWCDYCKKPGHYKETC 470
>gi|147859838|emb|CAN81441.1| hypothetical protein VITISV_036851 [Vitis vinifera]
Length = 406
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 97/211 (45%), Gaps = 26/211 (12%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVY-NQDNTAKCFHLEYEIARYSQGDLSIQ 59
M+W++ S++ + N + TAKD+W+ K+ Y + +NT++ F +E + + QG+ S+
Sbjct: 88 MSWLINSMNNDIGENFLLFGTAKDIWDAAKETYSSSENTSELFQVESALHDFRQGEQSVT 147
Query: 60 NYLSGIQNLWAKYVDMIYVQVP--IESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMN 117
Y + + W + +D+ + A + + EQ + +F + L E R +M
Sbjct: 148 QYYNTLTRYWQQ-LDLFETHSWKCSDDAATYRQIVEQKRLFKFFLGLNRELDDVRGRIMG 206
Query: 118 RDLSPSLDVCFKELLREEQRLATQTILQQNKMHD----NAIAYAAAHGKSKGRDMRQVQC 173
PSL F E+ EE R + ++ +K NA A AA S G D ++
Sbjct: 207 IKPLPSLREAFSEVRXEESR---KKVMMGSKKQPAPTLNASALAARSFNSSGGDRQKRD- 262
Query: 174 FSCKEYRHIIVNCAKKFCNYCKKPGHIIKEC 204
+ +C+YCKKPGH + C
Sbjct: 263 --------------RPWCDYCKKPGHYKETC 279
>gi|297599407|ref|NP_001047108.2| Os02g0552700 [Oryza sativa Japonica Group]
gi|46389890|dbj|BAD15491.1| unknown protein [Oryza sativa Japonica Group]
gi|215687157|dbj|BAG90927.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255670992|dbj|BAF09022.2| Os02g0552700 [Oryza sativa Japonica Group]
Length = 304
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 102/228 (44%), Gaps = 26/228 (11%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
M +I SV+ + ++ + + TAK+MW+YLK+ Y Q++ A F L + Q D SI+
Sbjct: 37 MGFIFMSVEVPIRMSFRDHTTAKEMWDYLKQRYTQESGALRFSLLQNLHNLQQQDQSIEE 96
Query: 61 YLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRD------QFLMKLRPEYKAARSN 114
+ N + + + Q P + Q + K D QF+M+L ++++ R
Sbjct: 97 FY----NAFTRLSGQLEAQTPKGASGCAQ-CKAREKHDQENLVYQFVMRLSSQFESIRVQ 151
Query: 115 LMNRDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCF 174
L+ R P++ +L+ EE RL + + N +A G G
Sbjct: 152 LLGRPTRPTMAEALADLIAEETRLCSLDTTPTPVVTHNVMAAPQRVGAPMG--------- 202
Query: 175 SCKEYRHIIVNCAKKFCNYCKKPGHIIKEC----PTRPQNCQASQAVV 218
E+ I + + C++CKK GHI +C P + + QA +A V
Sbjct: 203 GIPEFSSIAKS--DRICSHCKKVGHISDDCFYLHPEKLADYQARRAAV 248
>gi|222623042|gb|EEE57174.1| hypothetical protein OsJ_07110 [Oryza sativa Japonica Group]
Length = 368
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 104/228 (45%), Gaps = 26/228 (11%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
M +I SV+ + ++ + + TAK+MW+YLK+ Y Q++ A F L + Q D SI+
Sbjct: 101 MGFIFMSVEVPIRMSFRDHTTAKEMWDYLKQRYTQESGALRFSLLQNLHNLQQQDQSIEE 160
Query: 61 YLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRD------QFLMKLRPEYKAARSN 114
+ N + + + Q P + Q + K D QF+M+L ++++ R
Sbjct: 161 FY----NAFTRLSGQLEAQTPKGASGCAQ-CKAREKHDQENLVYQFVMRLSSQFESIRVQ 215
Query: 115 LMNRDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCF 174
L+ R P++ +L+ EE RL + + N +A + G M + F
Sbjct: 216 LLGRPTRPTMAEALADLIAEETRLCSLDTTPTPVVTHNVMAAP----QRVGAPMGGIPEF 271
Query: 175 SCKEYRHIIVNCAKKFCNYCKKPGHIIKEC----PTRPQNCQASQAVV 218
S + + + C++CKK GHI +C P + + QA +A V
Sbjct: 272 SS-------IAKSDRICSHCKKVGHISDDCFYLHPEKLADYQARRAAV 312
>gi|147860770|emb|CAN82937.1| hypothetical protein VITISV_039222 [Vitis vinifera]
Length = 1193
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 96/211 (45%), Gaps = 26/211 (12%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVY-NQDNTAKCFHLEYEIARYSQGDLSIQ 59
M+W++ S++ + N + TAKD+W+ K+ Y + +NT++ F +E + + QG+ S+
Sbjct: 268 MSWLINSMNNDIGENFLLFGTAKDIWDAAKETYSSSENTSELFQVESALHDFRQGEQSVT 327
Query: 60 NYLSGIQNLWAKYVDMIYVQVP--IESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMN 117
Y + W + +D+ + A + + EQ + +F + L E R +M
Sbjct: 328 QYYNTFTRYWQQ-LDLFETHSWKCSDDAATYRQIVEQKRLFKFFLGLNRELDDVRGRIMG 386
Query: 118 RDLSPSLDVCFKELLREEQRLATQTILQQNKMHD----NAIAYAAAHGKSKGRDMRQVQC 173
PSL F E+ REE R + ++ +K +A A A S G D ++
Sbjct: 387 IKPLPSLREAFSEVRREESR---KKVMMGSKEQPAPTLDASALATRSFNSSGGDRQKRD- 442
Query: 174 FSCKEYRHIIVNCAKKFCNYCKKPGHIIKEC 204
+ +C+YCKKPGH + C
Sbjct: 443 --------------RPWCDYCKKPGHYKETC 459
>gi|218187530|gb|EEC69957.1| hypothetical protein OsI_00415 [Oryza sativa Indica Group]
Length = 463
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 96/210 (45%), Gaps = 22/210 (10%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
M +I SV+ + ++ + + TAK+MW+YLK+ Y Q++ A F L + Q D SI+
Sbjct: 196 MGFIFMSVEVPIRMSFRDHSTAKEMWDYLKQRYTQESGALRFSLLKNLHNLQQQDQSIEE 255
Query: 61 YLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRD------QFLMKLRPEYKAARSN 114
+ N + + + Q P + Q + K D QF+M+L ++++ R
Sbjct: 256 FY----NAFTRLSGQLEAQTPKGASGCAQ-CKAREKHDQENLVYQFVMRLSSQFESIRVQ 310
Query: 115 LMNRDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCF 174
L+ R P++ +L+ EE RL + + N +A + G M + F
Sbjct: 311 LLGRPTRPTMAEALADLIAEETRLCSLDTTPTPVVTHNVMAAP----QRVGAPMGGIPEF 366
Query: 175 SCKEYRHIIVNCAKKFCNYCKKPGHIIKEC 204
S + + + C++CKK GHI +C
Sbjct: 367 SS-------IAKSDRICSHCKKVGHISNDC 389
>gi|147863169|emb|CAN80919.1| hypothetical protein VITISV_002640 [Vitis vinifera]
Length = 1450
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 98/216 (45%), Gaps = 17/216 (7%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQG-DLSIQ 59
++WI ++D + L ++ AK +WE+LK+ Y N + L+ IA+ Q +S+
Sbjct: 88 VSWITNTIDPEVKSTLSKFRDAKRLWEHLKQRYAMVNGPRIQQLKTSIAKCEQSKSMSVT 147
Query: 60 NYLSGIQNLWAKYVDMIYVQVPIES---------LADVQGVHEQSKRDQFLMKLRPE-YK 109
Y + LW + ++ P+ S + Q EQ K FLM L + Y
Sbjct: 148 TYYGKLNVLWEE----LFKHEPLISCTCCSSCTAASLHQARREQGKLHDFLMGLNTDLYA 203
Query: 110 AARSNLMNRDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMR 169
R+N++++D PSLD ++ ++++++ + + + A G+ +G+ R
Sbjct: 204 QLRTNILSQDPLPSLDRAYQLVIQDKRVRLAKAVTEDKPAEVLGFAVRTGAGRGRGKTER 263
Query: 170 QVQCFSCKEYRHIIVNC-AKKFCNYCKKPGHIIKEC 204
V C CK+ H C + C +C K GH C
Sbjct: 264 PV-CSHCKKTGHETSTCWSLVACPHCHKHGHDKNNC 298
>gi|54290217|dbj|BAD61105.1| unknown protein [Oryza sativa Japonica Group]
gi|125569041|gb|EAZ10556.1| hypothetical protein OsJ_00390 [Oryza sativa Japonica Group]
Length = 337
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 96/210 (45%), Gaps = 22/210 (10%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
M +I SV+ + ++ + + TAK+MW+YLK+ Y Q++ A F L + Q D SI+
Sbjct: 70 MGFIFMSVEVPIRMSFRDHSTAKEMWDYLKQRYTQESGALRFSLLQNLHNLQQQDQSIEE 129
Query: 61 YLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRD------QFLMKLRPEYKAARSN 114
+ N + + + Q P + Q + K D QF+M+L ++++ R
Sbjct: 130 FY----NAFTRLSGQLEAQTPKGASGCAQ-CKAREKHDQENLVYQFVMRLSSQFESIRVQ 184
Query: 115 LMNRDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCF 174
L+ R P++ +L+ EE RL + + N +A + G M + F
Sbjct: 185 LLGRPTRPTMAEALADLIAEETRLCSLDTTPTPVVTHNVMAAP----QRVGAPMGGIPEF 240
Query: 175 SCKEYRHIIVNCAKKFCNYCKKPGHIIKEC 204
S + + + C++CKK GHI +C
Sbjct: 241 SS-------IAKSDRICSHCKKVGHISDDC 263
>gi|147805337|emb|CAN67449.1| hypothetical protein VITISV_031400 [Vitis vinifera]
Length = 1618
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 97/211 (45%), Gaps = 26/211 (12%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVY-NQDNTAKCFHLEYEIARYSQGDLSIQ 59
M+W++ S++ + N ++TAKD+W+ K+ Y + +N ++ F +E + + QG+ S+
Sbjct: 290 MSWLINSMNNDIGENFLLFRTAKDIWDVAKETYSSSENISELFQVESALHDFRQGEQSVT 349
Query: 60 NYLSGIQNLWAKYVDMIYVQVP--IESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMN 117
Y + + W + +D+ + A + + EQ + +F + L E R +M
Sbjct: 350 QYYNTLTRYWQQ-LDLFETHSWKCSDDAATYRKIVEQKRLFKFFLGLNRELDDVRGRIMG 408
Query: 118 RDLSPSLDVCFKELLREEQRLATQTILQQNKMHD----NAIAYAAAHGKSKGRDMRQVQC 173
PSL F E+ REE R + ++ +K +A A AA S G D ++
Sbjct: 409 IKPLPSLREAFSEVRREESR---KKVMMGSKEQPAPTLDASALAARSFNSSGGDHQKRD- 464
Query: 174 FSCKEYRHIIVNCAKKFCNYCKKPGHIIKEC 204
+ +C+YCKKP H + C
Sbjct: 465 --------------RPWCDYCKKPSHYKEAC 481
>gi|147773762|emb|CAN60972.1| hypothetical protein VITISV_032051 [Vitis vinifera]
Length = 1446
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 96/211 (45%), Gaps = 26/211 (12%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVY-NQDNTAKCFHLEYEIARYSQGDLSIQ 59
M+W++ S++ + N + TAKD+W+ K+ Y + +NT++ F +E + + QG+ +
Sbjct: 88 MSWLINSMNNDIGENFLLFGTAKDIWDAAKETYSSSENTSELFQVESALHDFRQGEQLVT 147
Query: 60 NYLSGIQNLWAKYVDMIYVQVP--IESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMN 117
Y + + W + +D+ + A + + EQ + +F + L E R +M
Sbjct: 148 QYYNTLTRYWQQ-LDLFETHSWKCSDDAATYRQIVEQKRLFKFFLGLNRELDDVRGRIMG 206
Query: 118 RDLSPSLDVCFKELLREEQRLATQTILQQNKMHD----NAIAYAAAHGKSKGRDMRQVQC 173
PSL F E+ REE R + ++ +K + A AA S G D ++
Sbjct: 207 IKPLPSLREAFSEVRREESR---KKVMMGSKEQPAPTLDGSALAARSFNSSGGDRQKRD- 262
Query: 174 FSCKEYRHIIVNCAKKFCNYCKKPGHIIKEC 204
+ +C+YCKKPGH + C
Sbjct: 263 --------------RPWCDYCKKPGHYKEAC 279
>gi|147768800|emb|CAN64765.1| hypothetical protein VITISV_009574 [Vitis vinifera]
Length = 1426
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 97/211 (45%), Gaps = 26/211 (12%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQ-DNTAKCFHLEYEIARYSQGDLSIQ 59
M+W++ S++ + N + TAKD+W+ K+ Y+ +N ++ F +E + + QG+ ++
Sbjct: 88 MSWLINSMNNDIGENFLLFGTAKDIWDAAKETYSSSENXSELFQVESALHDFRQGEQTVT 147
Query: 60 NYLSGIQNLWAKYVDMIYVQVP--IESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMN 117
Y + + W +++D+ + A + + EQ + +F + L E R +M
Sbjct: 148 QYYNTLTRYW-QHLDLFETHSXKCSDDAATYRKIVEQKRLFKFFLGLNRELDDVRGRIMG 206
Query: 118 RDLSPSLDVCFKELLREEQRLATQTILQQNKMHD----NAIAYAAAHGKSKGRDMRQVQC 173
PSL F E+ REE R + ++ +K +A A AA S G D ++
Sbjct: 207 IKPLPSLRXAFSEVRREESR---KKVMMGSKEQPAPTLDASALAARSFNSSGGDRQKRD- 262
Query: 174 FSCKEYRHIIVNCAKKFCNYCKKPGHIIKEC 204
+ +C+YCKK GH + C
Sbjct: 263 --------------RPWCDYCKKXGHYKETC 279
>gi|359493621|ref|XP_002282909.2| PREDICTED: glutamate receptor 2.7-like [Vitis vinifera]
Length = 1452
Score = 70.9 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 51/159 (32%), Positives = 81/159 (50%), Gaps = 11/159 (6%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQG-DLSIQ 59
+TWI + S+ L + AK W+ L K Y+ + + + L E+ + Q SI
Sbjct: 75 LTWIRNTSIPSISNLLGSFDDAKSAWDMLTKRYSTTHGSMKYQLVVELHQLRQEPGQSIN 134
Query: 60 NYLSGIQNLWAKYVDMIYVQVPI-ESLADVQ---GVHEQSKRDQFLMKLRPEYKAARSNL 115
+Y ++ +W D I + PI E D Q + ++ + +FLM L +++ R L
Sbjct: 135 DYYDQLRFIW----DQIDLSDPIWECSKDAQQYASIRDEFRLYEFLMSLHKDFEPIRGQL 190
Query: 116 MNRDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAI 154
+NR +PSLD EL+REE RLA T+ QNK++ AI
Sbjct: 191 LNRSPAPSLDTAVNELVREEARLA--TLQAQNKLNILAI 227
>gi|147773688|emb|CAN74194.1| hypothetical protein VITISV_040578 [Vitis vinifera]
Length = 1353
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 106/235 (45%), Gaps = 39/235 (16%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVY-NQDNTAKCFHLEYEIARYSQGDLSIQ 59
M+W++ S+ + N Y TAK++W+ ++ Y N DNT+ F ++ + QGD ++
Sbjct: 89 MSWLINSMTNDIGENFMYYGTAKEIWDAARETYSNIDNTSAIFEIKSILQDLRQGDSTVT 148
Query: 60 NYLSGIQNLWAK---YVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLM 116
Y + + W + Y ++++ + P + L + V E+ + +FL+ L R ++
Sbjct: 149 EYFNILTRYWQQLDIYEELVW-KCPEDGLL-YKKVIEKERIYKFLLGLNKNLDEVRGRVL 206
Query: 117 NRDLSPSLDVCFKELLREEQR----LATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQ 172
+ PS+ F E+ REE R L TQ + ++A+ A G + Q +
Sbjct: 207 SIKPLPSVREVFSEIRREESRQKVMLGTQN--SSKNLENSAL---VARGTQSNNNXHQTK 261
Query: 173 CFSCKEYRHIIVNCAKKFCNYCKKPGHIIKEC-----------PTRPQNCQASQA 216
+ +C++C+KPGH + C P+RPQ + +A
Sbjct: 262 -------------KNRPWCDHCRKPGHTKETCWHLHGKPADWKPSRPQQNKEGRA 303
>gi|147855390|emb|CAN79613.1| hypothetical protein VITISV_027440 [Vitis vinifera]
Length = 491
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 96/211 (45%), Gaps = 26/211 (12%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQ-DNTAKCFHLEYEIARYSQGDLSIQ 59
M+W++ S++ + + AKD+W+ K+ Y+ +NT++ F +E + + QG+ S+
Sbjct: 20 MSWLINSMNNDIGEXFLLFXXAKDIWDAAKETYSSSENTSELFQVESTLHDFRQGEQSVT 79
Query: 60 NYLSGIQNLWAKYVDMIYVQVP--IESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMN 117
Y + + W + +D+ + A + + +Q + +F + L E R +M
Sbjct: 80 QYYNTLTRYWQQ-LDLFETHSWKCSDDAATYRKIMKQKRLFKFFLGLNRELDDVRGRIMG 138
Query: 118 RDLSPSLDVCFKELLREEQRLATQTILQQNKMHD----NAIAYAAAHGKSKGRDMRQVQC 173
PSL F E+ REE R + ++ +K +A A AA S G D ++
Sbjct: 139 IKPLPSLREAFSEVRREESR---KKVMMGSKEQPAPTLDASALAARSFNSSGGDRQKRD- 194
Query: 174 FSCKEYRHIIVNCAKKFCNYCKKPGHIIKEC 204
+ +C+YCKKPGH + C
Sbjct: 195 --------------RPWCDYCKKPGHYKEAC 211
>gi|147810393|emb|CAN59964.1| hypothetical protein VITISV_022757 [Vitis vinifera]
Length = 1481
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 94/209 (44%), Gaps = 22/209 (10%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVY-NQDNTAKCFHLEYEIARYSQGDLSIQ 59
M+W++ S++ + N ++TAKD+W+ K+ Y + +NT++ F +E + + QG+ S+
Sbjct: 88 MSWLINSMNNDIGENFLLFRTAKDIWDAAKETYSSSENTSELFQVESALHDFRQGEQSVT 147
Query: 60 NYLSGIQNLWAKYVDMIYVQVP--IESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMN 117
Y + + W + +D+ + A + + EQ + +F + L E R +M
Sbjct: 148 QYYNTLTRYWQQ-LDLFETHSWKCSDDAATYRXIVEQXRLFKFFLGLNRELDDVRGRIMG 206
Query: 118 RDLSPSLDVCFKELLREEQR--LATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFS 175
PSL F E+ REE R + + Q D + A + S G ++
Sbjct: 207 IKPLPSLREAFSEVRREESRKKVMMGSKEQPAPTLDASXLXARSFNSSGGDRQKR----- 261
Query: 176 CKEYRHIIVNCAKKFCNYCKKPGHIIKEC 204
+ +C+YCKK GH + C
Sbjct: 262 -----------DRPWCDYCKKXGHYKEAC 279
>gi|147804937|emb|CAN60374.1| hypothetical protein VITISV_001215 [Vitis vinifera]
Length = 1535
Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 102/219 (46%), Gaps = 27/219 (12%)
Query: 2 TWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNY 61
+WI+ +++ + ++ Y TA ++WE L + ++Q N + F ++ EIA + Q LSI Y
Sbjct: 112 SWIVNTLNPEISDSVIYYATAHEVWEDLCERFSQSNAPRIFEIQREIAYHRQEQLSISVY 171
Query: 62 LSGIQNLW---AKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNR 118
+ +++LW A Y D A +Q + QFLM L Y A R ++
Sbjct: 172 YTKLKSLWDELASYND-----------ASSGAQQDQQRLMQFLMGLNESYSAIRGQILLM 220
Query: 119 DLSPSLDVCFKELLREE-QRL--ATQTI----------LQQNKMHDNAIAYAAAHGKSKG 165
+ PS+ + + +EE QRL AT T ++ N+M +N+ A + +
Sbjct: 221 NPLPSIRQAYSSVCQEEKQRLLSATHTTAESNSSAAMAVRSNQMKNNSAGNARSDRSDRF 280
Query: 166 RDMRQVQCFSCKEYRHIIVNCAKKFCNYCKKPGHIIKEC 204
+ Q ++ R + + C YC + GH +++C
Sbjct: 281 YNSSQDSRRFDQDKRRSGSSKGRPQCTYCGEMGHFVEKC 319
>gi|215737332|dbj|BAG96261.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222635800|gb|EEE65932.1| hypothetical protein OsJ_21799 [Oryza sativa Japonica Group]
Length = 339
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 98/209 (46%), Gaps = 19/209 (9%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
M ++ S + + +N +AK MWEYL++ Y Q + A F L + QGD++I+
Sbjct: 68 MAFLCMSAEVPIRMNFIDLSSAKKMWEYLQQRYQQSSAALRFSLRKSLQSLEQGDMTIEE 127
Query: 61 YLSGIQNLWAKYVDMIYVQVPIESLADVQGV-----HEQSKRDQFLMKLRPEYKAARSNL 115
+ + +L ++ +D + VP Q + EQS F+M+LR +++ R L
Sbjct: 128 FHNAFTSL-SRQLDSM---VPKAGGGCRQCICKEKYEEQSLMFDFVMRLRLDFEPIRVQL 183
Query: 116 MNRDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFS 175
+ R P++ +L+ EE RL + L + + ++ G S D F
Sbjct: 184 LGRSTLPTMAEALADLIAEETRLQS---LPNATTPQHTVLASSLMGTSLSGD----HAF- 235
Query: 176 CKEYRHIIVNCAKKFCNYCKKPGHIIKEC 204
++ + + + C++CK+ GH +++C
Sbjct: 236 --QHGSLATSSTQIVCSHCKRSGHRVEKC 262
>gi|147816112|emb|CAN73014.1| hypothetical protein VITISV_007603 [Vitis vinifera]
Length = 1121
Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 98/211 (46%), Gaps = 26/211 (12%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQ-DNTAKCFHLEYEIARYSQGDLSIQ 59
M+W++ S++ + + TAKD+W+ K+ Y+ +NT+K F +E + + QG+ ++
Sbjct: 240 MSWLINSMNNDIGEIFLLFGTAKDIWDAAKETYSSSENTSKLFQVESALHDFRQGEQTVT 299
Query: 60 NYLSGIQNLWAKYVDMIYVQVP--IESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMN 117
Y + + W +++D+ + A + + EQ + +F + L E R +M+
Sbjct: 300 QYYNTLTRYW-QHLDLFETHSWKCSDDAATYRKIVEQKRLFKFFLGLNRELDDVRGRIMD 358
Query: 118 RDLSPSLDVCFKELLREEQRLATQTILQQNKMHD----NAIAYAAAHGKSKGRDMRQVQC 173
PSL F E+ REE R + ++ +K +A A AA S G D ++
Sbjct: 359 IKPLPSLREAFSEVRREESR---KKVMMGSKEPPAPTLDASALAARSFNSSGGDRQKRD- 414
Query: 174 FSCKEYRHIIVNCAKKFCNYCKKPGHIIKEC 204
+ +C+YCKK GH + C
Sbjct: 415 --------------RPWCDYCKKLGHYKETC 431
>gi|147786963|emb|CAN66596.1| hypothetical protein VITISV_019893 [Vitis vinifera]
Length = 1430
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 97/211 (45%), Gaps = 26/211 (12%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQ-DNTAKCFHLEYEIARYSQGDLSIQ 59
M+W++ S++ + N + TAKD+W+ ++ Y+ +N ++ F +E + + QG+ ++
Sbjct: 88 MSWLINSMNNDIGENFLLFGTAKDIWDAAEETYSSSENISELFQVESALHDFRQGEHTVT 147
Query: 60 NYLSGIQNLWAKYVDMIYVQVP--IESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMN 117
Y + + W +++D+ + A + + EQ + +F + L E R +M
Sbjct: 148 QYYNTLTRYW-QHLDLFETHSWKCSDDAATYRKIVEQKRLFKFFLGLNRELDDVRGXIMG 206
Query: 118 RDLSPSLDVCFKELLREEQRLATQTILQQNKMHD----NAIAYAAAHGKSKGRDMRQVQC 173
PSL F E+ REE R + ++ +K +A A AA S G D ++
Sbjct: 207 IKXLPSLREAFSEVRREESR---KKVMMGSKEQPXPTLDASALAARSFNSSGGDRQKRD- 262
Query: 174 FSCKEYRHIIVNCAKKFCNYCKKPGHIIKEC 204
+ +C+YCKK GH + C
Sbjct: 263 --------------RPWCDYCKKXGHYKETC 279
>gi|147801255|emb|CAN74847.1| hypothetical protein VITISV_028741 [Vitis vinifera]
Length = 1262
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 94/215 (43%), Gaps = 17/215 (7%)
Query: 2 TWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQG-DLSIQN 60
+WI ++D + L ++ AK +WE+LK+ Y N + L+ IA+ Q +S+
Sbjct: 88 SWITNTIDPEVKSTLSKFRDAKRLWEHLKQRYAMVNGPRIQQLKTSIAKCEQPKSMSVTT 147
Query: 61 YLSGIQNLWAKYVDMIYVQVPIES---------LADVQGVHEQSKRDQFLMKLRPE-YKA 110
Y + LW + ++ P+ S + Q EQ K FLM L + Y
Sbjct: 148 YYGKLNVLWEE----LFKNEPLISCTCCSSCTAASLHQARREQGKLHDFLMGLNTDLYAQ 203
Query: 111 ARSNLMNRDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQ 170
R+N++++D PSLD ++ ++++E+ + + + G+ +G+ R
Sbjct: 204 LRTNILSQDPLPSLDRAYQLVIQDERVRLAKAVTEDKPAEVLGFXVRTGAGRGRGKTERP 263
Query: 171 VQCFSCKEYRHIIVNCAKKF-CNYCKKPGHIIKEC 204
V C K+ H C C +C K GH C
Sbjct: 264 V-CSHXKKTGHETSTCWSXVACPHCHKHGHDKNNC 297
>gi|147778986|emb|CAN62538.1| hypothetical protein VITISV_031159 [Vitis vinifera]
Length = 1481
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 95/211 (45%), Gaps = 26/211 (12%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVY-NQDNTAKCFHLEYEIARYSQGDLSIQ 59
M+W++ S++ + N + TAKD+W+ K+ Y + +N ++ F +E + + QG+ S+
Sbjct: 88 MSWLINSMNNDIGENFLLFGTAKDIWDAAKETYSSSENISELFQVESALHDFRQGEQSVT 147
Query: 60 NYLSGIQNLWAKYVDMIYVQVP--IESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMN 117
Y + + W + +D+ + A + + EQ + +F + L E R +M
Sbjct: 148 QYYNTLTRYWQQ-LDLFETHSWKCSDDAATYRQIVEQKRLFKFFLGLNRELDDVRGRIMG 206
Query: 118 RDLSPSLDVCFKELLREEQRLATQTILQQNKMHD----NAIAYAAAHGKSKGRDMRQVQC 173
PSL F E+ REE R + ++ +K + A AA S G D ++
Sbjct: 207 IKPLPSLREVFSEVRREESR---KKVMMGSKEQPAPTLDGSALAARSFNSSGGDRQKRD- 262
Query: 174 FSCKEYRHIIVNCAKKFCNYCKKPGHIIKEC 204
+ +C+Y KKPGH + C
Sbjct: 263 --------------RPWCDYYKKPGHYKEAC 279
>gi|147779587|emb|CAN76645.1| hypothetical protein VITISV_004685 [Vitis vinifera]
Length = 1196
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 94/216 (43%), Gaps = 17/216 (7%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQG-DLSIQ 59
++WI ++D + L ++ AK +WE+LK+ Y N + L+ IA+ Q +S+
Sbjct: 3 VSWITNTIDPEVKSTLSKFRDAKRLWEHLKQRYAMVNGPRIQQLKTSIAKCEQSKSMSVT 62
Query: 60 NYLSGIQNLWAKYVDMIYVQVPIES---------LADVQGVHEQSKRDQFLMKLRPE-YK 109
Y + LW + ++ P+ S + Q EQ K FLM L + Y
Sbjct: 63 TYYGKLNVLWEE----LFKHEPLISCTCCSSCTAASLHQARREQGKLHDFLMGLNTDLYA 118
Query: 110 AARSNLMNRDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMR 169
+N++++D PSLD ++ ++++E+ + + + A G +G+ R
Sbjct: 119 QLXTNILSQDPLPSLDRAYQLVIQDERVRLAKAVTEDKPAEVLGFAVRTGVGXGRGKTER 178
Query: 170 QVQCFSCKEYRHIIVNCAKKF-CNYCKKPGHIIKEC 204
V C K+ H C C +C K GH C
Sbjct: 179 LV-CXHXKKTGHETSTCWSXVACPHCHKHGHDKNNC 213
>gi|284434481|gb|ADB85253.1| putative retrotransposon protein [Phyllostachys edulis]
Length = 861
Score = 67.0 bits (162), Expect = 5e-09, Method: Composition-based stats.
Identities = 38/140 (27%), Positives = 74/140 (52%), Gaps = 3/140 (2%)
Query: 7 SVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLSGIQ 66
SVD S+ ++ + + +W+YL++ Y Q + A+ F L+ E+ Q D S+ ++ +
Sbjct: 46 SVDDSIQPDIVGLRATRQIWQYLRERYQQSSDAQFFSLQRELETLHQEDSSVDDFFQALT 105
Query: 67 NLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRDLSPSLDV 126
+LW + +D + + E + H++ + F+ +LRPE++ R+ L++R P++
Sbjct: 106 SLW-RQLDELASPLCQECHEVQKADHDRLRLYDFVCRLRPEFEPVRAQLLSRSPRPTVTE 164
Query: 127 CFKELLREEQR--LATQTIL 144
L EE R LA Q +L
Sbjct: 165 TLSTLRAEELRRGLAAQFVL 184
>gi|147785635|emb|CAN77638.1| hypothetical protein VITISV_007620 [Vitis vinifera]
Length = 705
Score = 66.6 bits (161), Expect = 6e-09, Method: Composition-based stats.
Identities = 28/45 (62%), Positives = 32/45 (71%)
Query: 169 RQVQCFSCKEYRHIIVNCAKKFCNYCKKPGHIIKECPTRPQNCQA 213
+ +QCF KEY HI C KKFC+YCK+ GHIIKEC PQN QA
Sbjct: 4 KNLQCFCYKEYGHIAATCPKKFCSYCKRKGHIIKECHICPQNRQA 48
>gi|147792850|emb|CAN68802.1| hypothetical protein VITISV_008809 [Vitis vinifera]
Length = 1397
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 94/211 (44%), Gaps = 26/211 (12%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQ-DNTAKCFHLEYEIARYSQGDLSIQ 59
M+W++ S++ + N + TAKD+W+ K+ Y+ +N ++ F +E + + QG+ S+
Sbjct: 88 MSWLINSMNNDIXENFLLFGTAKDIWDAAKETYSSXENISELFQVESALHDFXQGEQSVT 147
Query: 60 NYLSGIQNLWAKYVDMIYVQVP--IESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMN 117
Y + + W + +D+ + A + + EQ + +F + L E R +M
Sbjct: 148 QYYNTLTRYWQQ-LDLFETHSWKCSDDAATYRQIVEQKRLFKFFLGLNRELDDVRGRIMG 206
Query: 118 RDLSPSLDVCFKELLREEQRLATQTILQQNKMHD----NAIAYAAAHGKSKGRDMRQVQC 173
SL F E+ EE R + ++ +K + A AA S G D ++
Sbjct: 207 IKPLXSLREAFSEVRXEESR---KKVMMGSKEQPAPTLDGSALAARSFNSSGGDRQKRD- 262
Query: 174 FSCKEYRHIIVNCAKKFCNYCKKPGHIIKEC 204
+ +C+YCKKPGH + C
Sbjct: 263 --------------RPWCDYCKKPGHYKEAC 279
>gi|147805068|emb|CAN69184.1| hypothetical protein VITISV_004341 [Vitis vinifera]
Length = 1360
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 54/237 (22%), Positives = 104/237 (43%), Gaps = 35/237 (14%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVY-NQDNTAKCFHLEYEIARYSQGDLSIQ 59
M+W++ S+ + N Y TAK++W+ ++ Y N DNT+ F ++ + QGD +
Sbjct: 89 MSWLINSMTNDIGENFMYYGTAKEIWDAARETYSNIDNTSAIFXIKSILQDLRQGDSTXT 148
Query: 60 NYLSGIQNLWAK---YVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLM 116
Y + + W + Y ++++ + P + L + V E+ + +FL+ L R ++
Sbjct: 149 EYFNILTRYWQQLDIYEELVW-KCPEDGLL-YKKVIEKERIYKFLLGLNKNLDEVRGRVL 206
Query: 117 NRDLSPSLDVCFKELLREE--QRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCF 174
+ PS+ F E+ REE Q++ T + ++A+ A G + Q +
Sbjct: 207 SIKPLPSVREVFSEIRREESRQKVMLGTXNSSKNLENSAL---VARGTQSNNNNHQTK-- 261
Query: 175 SCKEYRHIIVNCAKKFCNYCKKPGHIIKEC-----------PTRPQNCQASQAVVAS 220
+ +C +C+KPGH C P+RPQ + + A+
Sbjct: 262 -----------KNRPWCXHCRKPGHXKXTCWHLHGKPVDWKPSRPQQNKEGRGYTAT 307
>gi|2244802|emb|CAB10225.1| retrovirus-related like polyprotein [Arabidopsis thaliana]
gi|7268152|emb|CAB78488.1| retrovirus-related like polyprotein [Arabidopsis thaliana]
Length = 1489
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 49/219 (22%), Positives = 98/219 (44%), Gaps = 38/219 (17%)
Query: 2 TWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNY 61
TW+M SVD+ + +L T + +W L + QD+ + F +E ++++ QG + I Y
Sbjct: 103 TWLMNSVDKKIGQSLLYIATVQGIWNNLLSRFKQDDAPRIFDIEQKLSKIEQGSMDISTY 162
Query: 62 LSGIQNLWAKYVDMIYVQVPI------ESLADVQGVHEQ--SKRDQFLMKLRPEYKAARS 113
+ + LW ++ + YV++P+ E A V+ H Q S+ +FL +L + R
Sbjct: 163 YTALLTLWEEHRN--YVELPVCTCGRCECDAAVKWEHLQQRSRVTKFLKELNEGFDQTRR 220
Query: 114 NLMNRDLSPSLDVCFKELLREEQ--------RLATQTILQQNKMHDNAIAYAAAHGKSKG 165
+++ P++ F + ++E+ R+ + + ++++ AY AA+ +
Sbjct: 221 HILMLKPIPTIKEAFNMVTQDERQRNVKPLTRVDSVAFQNTSMINEDENAYVAAYNTVRP 280
Query: 166 RDMRQVQCFSCKEYRHIIVNCAKKFCNYCKKPGHIIKEC 204
K C +C K GH I++C
Sbjct: 281 NQ--------------------KPICTHCGKVGHTIQKC 299
>gi|147795051|emb|CAN69597.1| hypothetical protein VITISV_038518 [Vitis vinifera]
Length = 1893
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 89/209 (42%), Gaps = 45/209 (21%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVY-NQDNTAKCFHLEYEIARYSQGDLSIQ 59
M+W++ S++ + N + TAKD+W+ K+ Y + +N +K F +E + + QG+ ++
Sbjct: 667 MSWLINSMNNDIGENFLLFGTAKDIWDAAKETYSSSENISKLFQVESALHDFRQGEQTVT 726
Query: 60 NYLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRD 119
Y + + + + EQ + +F + L E R +M
Sbjct: 727 QYYNTL----------------------TRKIVEQKRLFKFFLGLNRELDDVRGRIMGIK 764
Query: 120 LSPSLDVCFKELLREEQRLATQTILQQNKMHD----NAIAYAAAHGKSKGRDMRQVQCFS 175
PSL F E+ REE R + ++ +K + A AA S G D ++
Sbjct: 765 PLPSLREAFSEVRREESR---KKVMMGSKEQPAPTLDXSALAARSFNSSGGDRQKRD--- 818
Query: 176 CKEYRHIIVNCAKKFCNYCKKPGHIIKEC 204
+ +C+YCKKPGH + C
Sbjct: 819 ------------RPWCDYCKKPGHYKETC 835
>gi|147789799|emb|CAN67240.1| hypothetical protein VITISV_037460 [Vitis vinifera]
Length = 1174
Score = 65.9 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 46/124 (37%), Positives = 63/124 (50%), Gaps = 13/124 (10%)
Query: 95 SKRDQF-----LMKLRPEYKAARSNLMNRDLSPSLDVCFKELLREEQRLATQTILQQNKM 149
+KRD+F LM L +++ R L+N +PSLD EL+REE LA T+ QNK+
Sbjct: 59 AKRDEFRLYEFLMSLHKDFEPIRGQLLNSSPAPSLDTDVNELVREEAHLA--TLQAQNKL 116
Query: 150 HDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCAKKFCNYCKKPGHIIKECPTRPQ 209
+ AI + + +Q F R N KKFCNYCK PGH I+ C R +
Sbjct: 117 NVLAITPSTPLIEQP----QQSGDFFGSSNRRKQTN--KKFCNYCKCPGHTIETCYRRNE 170
Query: 210 NCQA 213
+ A
Sbjct: 171 STTA 174
>gi|9954746|gb|AAG09097.1|AC009323_8 Putative retroelement polyprotein [Arabidopsis thaliana]
Length = 1486
Score = 65.5 bits (158), Expect = 2e-08, Method: Composition-based stats.
Identities = 44/205 (21%), Positives = 99/205 (48%), Gaps = 26/205 (12%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
++W+ ++D+++ ++ + ++W +++K + N + L+ E+A Q ++I+
Sbjct: 92 VSWMKLTIDETVSTSMSHLDDSHELWTHIQKRFGVKNGQRVQRLKTELATCRQKGVAIET 151
Query: 61 YLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPE-YKAARSNLMNRD 119
Y + LW D Y Q +++ DV+ E+ K QFLM L Y A +S L++R
Sbjct: 152 YYGRLSQLWRSLAD--YQQA--KTMDDVRKEREEDKLHQFLMGLDESVYGAVKSALLSRV 207
Query: 120 LSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEY 179
PSL+ + L ++E+ ++++ + + + +++ A S+ RD +
Sbjct: 208 PLPSLEEAYNALTQDEE---SKSLSRLHNERVDGVSF-AVQTTSRPRDSSE--------- 254
Query: 180 RHIIVNCAKKFCNYCKKPGHIIKEC 204
+ C+ C + GH+ ++C
Sbjct: 255 --------NRVCSNCGRVGHLAEQC 271
>gi|359487104|ref|XP_002274088.2| PREDICTED: uncharacterized protein LOC100259102 [Vitis vinifera]
Length = 1624
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 94/206 (45%), Gaps = 23/206 (11%)
Query: 3 WIMGSVDQSLVLNLKPYKTAKDMWEYLKKVY-NQDNTAKCFHLEYEIARYSQGDLSIQNY 61
W++GS+D SL+ N + TAK +W+ + Y + + + + L +AR QG S++ Y
Sbjct: 190 WLIGSMDPSLIGNFIRFPTAKQVWDAIATTYFDGSDATQVYELRRRVARLRQGSGSLEKY 249
Query: 62 LSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQ---FLMKLRPEYKAARSNLMNR 118
+ +Q LW + +D P++ AD+Q + + DQ FL L + RS+++
Sbjct: 250 YNDLQGLW-REIDFRRPN-PMQCPADIQHFNNMLQEDQVYTFLDGLDDKLDNIRSDVLQL 307
Query: 119 DLSPSLDVCFKELLREEQR----------------LATQTILQQNKMHDNAIAYAAAHGK 162
P+++ + + RE R +A++++ Q + N+++ K
Sbjct: 308 KPFPTVEQAYAHVCREAVRQAVMTASNGEEAAGAVMASRSLKQGPSIAANSLSLNGKFSK 367
Query: 163 SKGRDMRQVQCFSCKEYRHIIVNCAK 188
+ G ++C C +H C K
Sbjct: 368 TNGPS-NDMKCSHCGNSKHTRDTCFK 392
>gi|255576655|ref|XP_002529217.1| conserved hypothetical protein [Ricinus communis]
gi|223531335|gb|EEF33173.1| conserved hypothetical protein [Ricinus communis]
Length = 93
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 55/98 (56%), Gaps = 15/98 (15%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
M+WI+ S++ S++LNLKPYKT+++MW YLKK + F+ + N
Sbjct: 11 MSWILRSMEPSILLNLKPYKTSREMWGYLKKFTTKATQHDGFNWK-------------SN 57
Query: 61 YLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRD 98
+++ ++ A Y D++ +P E L +Q VHE SK D
Sbjct: 58 WVNSVKG--ADYNDIVCASIPPEGLIAIQSVHETSKHD 93
>gi|359493351|ref|XP_002277841.2| PREDICTED: uncharacterized protein LOC100251634 [Vitis vinifera]
Length = 2816
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 94/208 (45%), Gaps = 21/208 (10%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVY-NQDNTAKCFHLEYEIARYSQGDLSIQ 59
M+W++ S+ + N + TAK++W+ K+ + +++NT++ +E + QG+L++
Sbjct: 2141 MSWLVNSMTADIGENFLSFDTAKEIWDTAKETFSDKENTSEIIQIEGILHDLRQGNLTVT 2200
Query: 60 NYLSGIQNLWAKYVDMIYVQVPIESLAD---VQGVHEQSKRDQFLMKLRPEYKAARSNLM 116
Y + + LW + +D V + D + + E + +FL+ L R +M
Sbjct: 2201 EYFNTLTRLW-RQLDTFEVH-NWNCVTDGFLYKKIVEGKRVFKFLLGLNKNLDEIRGRIM 2258
Query: 117 NRDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSC 176
PSL F E+ REE R + ++ + N +A + D RQ
Sbjct: 2259 GVKPLPSLREAFSEVRREESR---KNLMMGSHQQLNMAESSALKTQFAPFDNRQK----- 2310
Query: 177 KEYRHIIVNCAKKFCNYCKKPGHIIKEC 204
+ + +C++C+KPGH + C
Sbjct: 2311 -------IKGGRPWCDHCRKPGHSRETC 2331
>gi|10177558|dbj|BAB10837.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
Length = 1462
Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 47/181 (25%), Positives = 84/181 (46%), Gaps = 8/181 (4%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
++W+ ++ +SL ++ + DMW +++K + N + L+ E+A Q I+
Sbjct: 91 VSWMKLTIHESLATSMSHLDDSHDMWTHIQKRFGVKNGQRIQRLKTELATCRQKGTPIET 150
Query: 61 YLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPE-YKAARSNLMNRD 119
Y + LW D Y Q +++ +V+ E+ K QFLM L Y A +S L++R
Sbjct: 151 YYGKLSQLWRSLAD--YQQA--KTMEEVRKEREEDKLHQFLMGLDESMYGAVKSALLSRV 206
Query: 120 LSPSLDVCFKELLREEQRLATQTILQQ---NKMHDNAIAYAAAHGKSKGRDMRQVQCFSC 176
PSL+ + L ++E+ + + + KM NA + + S GR V S
Sbjct: 207 PLPSLEEAYNTLTQDEESKSLSRLHDERNDEKMRRNATSSSRNQSASMGRGSSVVPATSF 266
Query: 177 K 177
K
Sbjct: 267 K 267
>gi|147801115|emb|CAN75466.1| hypothetical protein VITISV_025054 [Vitis vinifera]
Length = 1576
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 94/208 (45%), Gaps = 21/208 (10%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVY-NQDNTAKCFHLEYEIARYSQGDLSIQ 59
M+W++ S+ + N + TAK++W+ K+ + +++NT++ +E + QG+L++
Sbjct: 209 MSWLVNSMTADIGENFLSFDTAKEIWDTAKETFSDKENTSEIIQIEGILHDLRQGNLTVT 268
Query: 60 NYLSGIQNLWAKYVDMIYVQVPIESLAD---VQGVHEQSKRDQFLMKLRPEYKAARSNLM 116
Y + + LW + +D V + D + + E + +FL+ L R +M
Sbjct: 269 EYFNTLTRLWXQ-LDTFEVH-NWNCVTDGFLYKKIVEGKRVFKFLLGLNKNLDEIRGRIM 326
Query: 117 NRDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSC 176
PSL F E+ REE R + ++ + N +A + D RQ
Sbjct: 327 GVKPLPSLREAFSEVRREESR---KNLMMGSHQQLNMAESSALKTQFAPFDNRQK----- 378
Query: 177 KEYRHIIVNCAKKFCNYCKKPGHIIKEC 204
+ + +C++C+KPGH + C
Sbjct: 379 -------IKGGRPWCDHCRKPGHSRETC 399
>gi|147809628|emb|CAN73351.1| hypothetical protein VITISV_027250 [Vitis vinifera]
Length = 1108
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/228 (23%), Positives = 101/228 (44%), Gaps = 39/228 (17%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVY-NQDNTAKCFHLEYEIARYSQGDLSIQ 59
++W++ S+ + N Y T K++W+ ++ Y N DNT+ F ++ + QGD ++
Sbjct: 66 ISWLINSMTNDIGENFMYYGTTKEIWDAARETYSNIDNTSAIFEIKSILQDLRQGDSTVT 125
Query: 60 NYLSGIQNLWAK---YVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLM 116
Y + + W + Y ++++ + P + L + V E+ +FL+ L R ++
Sbjct: 126 EYFNILTRYWQQLDIYEELVW-KCPEDGLL-YKKVIEKEHIYKFLLGLNKNLDEVRGRVL 183
Query: 117 NRDLSPSLDVCFKELLREEQR----LATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQ 172
+ PS+ F E+ REE R L TQ + ++A+ A G + Q +
Sbjct: 184 SIKPLPSVREVFSEIRREESRQKVMLGTQN--SSKNLENSAL---VARGTQSNNNNHQTK 238
Query: 173 CFSCKEYRHIIVNCAKKFCNYCKKPGHIIKEC-----------PTRPQ 209
+ +C++C+KPGH + C P+RPQ
Sbjct: 239 -------------KNRLWCDHCRKPGHTKETCWHLHGKLADWKPSRPQ 273
>gi|111183162|gb|ABH07899.1| putative polyprotein [Solanum lycopersicum]
Length = 1428
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 96/207 (46%), Gaps = 24/207 (11%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
++W+M +V + L+ + + +W LK+ +++ N + + L +I SQG S+ +
Sbjct: 80 LSWLMNTVSEELLSGIVYATNSCSVWNDLKERFDKVNRVRIYQLHRDITTLSQGTDSVSH 139
Query: 61 YLSGIQNLWAKYVDMIYVQVPIESLADVQGVH---EQSKRDQFLMKLRPEYKAARSNLMN 117
Y S ++ LW +Y D+I V P + + + + EQ + QFL L Y AR ++
Sbjct: 140 YFSKLKTLWNEY-DVI-VPSPCSTCSQSKEYNDHLEQMRLIQFLSGLNESYDQARRQILL 197
Query: 118 RDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCK 177
+ +PS++ + ++ +E +Q + DNA+ ++ S R+ Q +
Sbjct: 198 KGTTPSMNQAYAMIIEDE--------IQHSSCMDNAVEKPSSMVMSVNRN----QGAEKE 245
Query: 178 EYRHIIVNCAKKFCNYCKKPGHIIKEC 204
Y+ K C+YC GH C
Sbjct: 246 HYK-------GKKCDYCHFLGHTKDNC 265
>gi|147782555|emb|CAN60008.1| hypothetical protein VITISV_024743 [Vitis vinifera]
Length = 1102
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 90/192 (46%), Gaps = 12/192 (6%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQ-DNTAKCFHLEYEIARYSQGDLSIQ 59
M+W++ S++ + N + TAKD+W+ K+ Y+ NT++ F +E + + QG+ ++
Sbjct: 20 MSWLINSMNNDIGENFLLFGTAKDIWDATKETYSSFKNTSELFQVESALHDFRQGEQTVT 79
Query: 60 NYLSGIQNLWAKYVDMIYVQVP--IESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMN 117
Y + + W + +D+ + A + + EQ + +F + L E R +M
Sbjct: 80 QYYNTLTRYWQQ-LDLFETHSWKCSDDAATYRQIVEQKRLFKFFLGLNRELDDVRGRIMG 138
Query: 118 RDLSPSLDVCFKELLREEQRLATQTILQQNKMHD----NAIAYAAAHGKSKGRDMRQVQC 173
PSL F E+ REE R + ++ +K +A A AA S G D RQ +
Sbjct: 139 IKPLPSLREAFSEVRREESR---KKVMMGSKEQPAPTLDASALAARSFNSSGGD-RQKRD 194
Query: 174 FSCKEYRHIIVN 185
+Y H+ N
Sbjct: 195 RPWCDYSHVTAN 206
>gi|147784171|emb|CAN61815.1| hypothetical protein VITISV_009920 [Vitis vinifera]
Length = 1064
Score = 63.9 bits (154), Expect = 5e-08, Method: Composition-based stats.
Identities = 50/161 (31%), Positives = 81/161 (50%), Gaps = 15/161 (9%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQG-DLSIQ 59
+TWI + S+ L + AK W+ L K Y+ + + + L ++ + Q SI
Sbjct: 3 LTWIRNTSIPSISNLLGNFDNAKSTWDMLAKRYSTTHGSMKYQLMVKLHQLRQKPGQSIN 62
Query: 60 NYLSGIQNLWAKYVDMIYVQVPIESLA-DVQGVHEQSKRDQF-----LMKLRPEYKAARS 113
+Y ++ +W D I + P + + D Q S RD+F LM L ++++ R
Sbjct: 63 DYYDQLRFIW----DQIDLSDPTWACSKDAQ--QYASIRDEFCLYEFLMSLHKDFESIRG 116
Query: 114 NLMNRDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAI 154
L+NR +PSLD EL++EE RLA T+ QNK++ AI
Sbjct: 117 QLLNRSPAPSLDTAVNELVKEEARLA--TLQAQNKLNVLAI 155
>gi|147856198|emb|CAN80285.1| hypothetical protein VITISV_026753 [Vitis vinifera]
Length = 1387
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 82/167 (49%), Gaps = 9/167 (5%)
Query: 3 WIMGSVDQSLVLNLKPYKTAKDMWEYLKKVY-NQDNTAKCFHLEYEIARYSQGDLSIQNY 61
W++GS+D SL+ N + TAK +W+ + Y + + + + L +AR QG S++ Y
Sbjct: 106 WLIGSMDPSLIGNFIRFPTAKQVWDAIATTYFDGSDATQVYELRRRVARLRQGSGSLEKY 165
Query: 62 LSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQ---FLMKLRPEYKAARSNLMNR 118
+ +Q LW + +D P++ AD+Q + + D+ FL L + RS+++
Sbjct: 166 YNDLQGLW-REIDFRRPN-PMQCPADIQHFNNMLQEDRVYTFLDGLDDKLDNIRSDVLQL 223
Query: 119 DLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKG 165
P+++ + + RE R Q ++ N + A A A+ +G
Sbjct: 224 KPFPTVEQAYAHVRREAVR---QAVMTANNGEEAAGAVMASRSLKQG 267
>gi|50253554|gb|AAT71979.1| At5g39185 [Arabidopsis thaliana]
Length = 348
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 93/194 (47%), Gaps = 14/194 (7%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
++W+ ++ +SL ++ + DMW +++K + N + L+ E+A Q I+
Sbjct: 91 VSWMKLTIHESLATSMSHLDDSHDMWTHIQKRFGVKNGQRIQRLKTELATCRQKGTPIET 150
Query: 61 YLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPE-YKAARSNLMNRD 119
Y + LW D Y Q +++ +V+ E+ K QFLM L Y A +S L++R
Sbjct: 151 YYGKLSQLWRSLAD--YQQA--KTMEEVRKEREEDKLHQFLMGLDESMYGAVKSALLSRV 206
Query: 120 LSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAA-----AHGKSKGRDMRQVQCF 174
PSL+ + L ++E+ ++++ + + ++ +++A +K +D + C
Sbjct: 207 PLPSLEEAYNTLTQDEE---SKSLSRLHDERNDGVSFAVQTTPRTRSLTKNKD-SAIVCS 262
Query: 175 SCKEYRHIIVNCAK 188
C H+ NC K
Sbjct: 263 HCGRLGHLAENCFK 276
>gi|147782177|emb|CAN63193.1| hypothetical protein VITISV_017130 [Vitis vinifera]
Length = 2336
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 84/203 (41%), Gaps = 32/203 (15%)
Query: 7 SVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLSGIQ 66
SVD ++L+L+ YKT W K +Y D + + + I SQ DL + Y+ I
Sbjct: 1128 SVDPKILLHLRAYKTCFKFWTQAKGLYTND-IQRLYKVASAIVHISQQDLDLSTYIGQIA 1186
Query: 67 NLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLM-----KLRPEYKAARSNLMNRDLS 121
+L +++ ++ P+ VQ Q++ D+F M LRP+ + R ++
Sbjct: 1187 SLKEEFLTVM----PLTPDVGVQ----QTQLDKFFMVLTLIGLRPDLEPVRDQILGSSSV 1238
Query: 122 PSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRH 181
PSLD F LR +TQT L + D+++ + + +R
Sbjct: 1239 PSLDDVFTRFLRIS---STQT-LPFDSTSDSSVLVSQTSSRGSRSGIRG----------- 1283
Query: 182 IIVNCAKKFCNYCKKPGHIIKEC 204
+ C YC K GH C
Sbjct: 1284 ---RGQRPHCTYCNKLGHARDRC 1303
>gi|147765933|emb|CAN62423.1| hypothetical protein VITISV_020608 [Vitis vinifera]
Length = 1177
Score = 62.8 bits (151), Expect = 9e-08, Method: Composition-based stats.
Identities = 53/203 (26%), Positives = 89/203 (43%), Gaps = 32/203 (15%)
Query: 7 SVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLSGIQ 66
SVD ++L+L+ YKT W K +Y D + + + I SQ DL + Y+ I
Sbjct: 78 SVDPKILLHLRAYKTCFKFWTQAKGLYTND-IQRLYKVASAIVHISQQDLDLSTYIGQIA 136
Query: 67 NLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLM-----KLRPEYKAARSNLMNRDLS 121
+L +++ ++ + + + + +Q++ D+F M LR + ++ R ++
Sbjct: 137 SLKEEFLTVMPLTLDVGA--------QQTQLDKFFMVLTLIGLRSDLESVRDQILGSLSV 188
Query: 122 PSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRH 181
PSLD F LLR +TQT L + + D+A+ +H S+G C R
Sbjct: 189 PSLDDVFARLLRIS---STQT-LPSDSISDSAV--LVSHTTSRG---------GCSGNRG 233
Query: 182 IIVNCAKKFCNYCKKPGHIIKEC 204
C YC K GH C
Sbjct: 234 ---RGQHPHCTYCNKLGHTRDRC 253
>gi|147795320|emb|CAN67245.1| hypothetical protein VITISV_008680 [Vitis vinifera]
Length = 1333
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 92/208 (44%), Gaps = 21/208 (10%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVY-NQDNTAKCFHLEYEIARYSQGDLSIQ 59
M+W++ S+ + N + TAK++W K+ + +++NT++ +E + QG+L +
Sbjct: 396 MSWLVNSMTADIGENFLSFDTAKEIWNTAKETFSDKENTSEIIQIEGILHDLRQGNLMVT 455
Query: 60 NYLSGIQNLWAKYVDMIYVQVPIESLAD---VQGVHEQSKRDQFLMKLRPEYKAARSNLM 116
Y + + LW + +D V + D + + E + +FL+ L R +M
Sbjct: 456 EYFNTLTRLW-RQLDTFEVH-NWNCVTDGFLYKKIVEGKRVFKFLLGLNKNLDEIRGRIM 513
Query: 117 NRDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSC 176
PSL F E+ REE R + ++ + N +A + D RQ
Sbjct: 514 GVKPLPSLREAFSEVRREESR---KNLMMGSHQQLNMAESSALKTQFAPFDNRQK----- 565
Query: 177 KEYRHIIVNCAKKFCNYCKKPGHIIKEC 204
+ + +C++C+KPGH + C
Sbjct: 566 -------IKGGRPWCDHCRKPGHSRETC 586
>gi|359485412|ref|XP_003633269.1| PREDICTED: uncharacterized protein LOC100854802 [Vitis vinifera]
Length = 437
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 94/207 (45%), Gaps = 19/207 (9%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVY-NQDNTAKCFHLEYEIARYSQGDLSIQ 59
M+W++ S+ + N + TAK++W+ K+ + +++NT++ +E + QG+L++
Sbjct: 1 MSWLVNSMTADIGENFLSFDTAKEIWDIAKETFSDKENTSEIIQIEGILHDLRQGNLTVT 60
Query: 60 NYLSGIQNLWAKYVDMIYVQVP--IESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMN 117
Y + + LW + +D V + + + + + + +FL+ L R +M
Sbjct: 61 EYFNTLTRLW-RQLDTFEVHNWNCVTNGFLYKKIVQGKRVFKFLLGLNKNLDEIRGRIMG 119
Query: 118 RDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCK 177
PSL F E+ REE R + ++ + N +A + D RQ
Sbjct: 120 VKPLPSLREAFSEVRREESR---KNLMMGSHQQLNMAENSALKTQFAPFDNRQK------ 170
Query: 178 EYRHIIVNCAKKFCNYCKKPGHIIKEC 204
+ + +C++C+KPGH + C
Sbjct: 171 ------IKGGRPWCDHCRKPGHSRETC 191
>gi|296084335|emb|CBI24723.3| unnamed protein product [Vitis vinifera]
Length = 364
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 92/208 (44%), Gaps = 21/208 (10%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVY-NQDNTAKCFHLEYEIARYSQGDLSIQ 59
M+W++ S+ + N + TAK++W K+ + +++NT++ +E + QG+L +
Sbjct: 94 MSWLVNSMTADIGENFLSFDTAKEIWNTAKETFSDKENTSEIIQIEGILHDLRQGNLMVT 153
Query: 60 NYLSGIQNLWAKYVDMIYVQVPIESLAD---VQGVHEQSKRDQFLMKLRPEYKAARSNLM 116
Y + + LW + +D V + D + + E + +FL+ L R +M
Sbjct: 154 EYFNTLTRLW-RQLDTFEVHN-WNCVTDGFLYKKIVEGKRVFKFLLGLNKNLDEIRGRIM 211
Query: 117 NRDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSC 176
PSL F E+ REE R + ++ + N +A + D RQ
Sbjct: 212 GVKPLPSLREAFSEVRREESR---KNLMMGSHQQLNMAESSALKTQFAPFDNRQK----- 263
Query: 177 KEYRHIIVNCAKKFCNYCKKPGHIIKEC 204
+ + +C++C+KPGH + C
Sbjct: 264 -------IKGGRPWCDHCRKPGHSRETC 284
>gi|147856388|emb|CAN79175.1| hypothetical protein VITISV_001884 [Vitis vinifera]
Length = 1487
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 70/140 (50%), Gaps = 4/140 (2%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVY-NQDNTAKCFHLEYEIARYSQGDLSIQ 59
M+W++ S++ + N + TAKD+W+ K+ Y + +NT++ F +E + + QG+ S+
Sbjct: 88 MSWLINSMNNDIGENFLLFGTAKDIWDAAKETYSSSENTSELFQVESALHDFRQGEQSVT 147
Query: 60 NYLSGIQNLWAKYVDMIYVQVP--IESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMN 117
Y + + W + +D+ + A + + EQ + +F + L E R +M
Sbjct: 148 QYYNTLTRYWQQ-LDLFETHSWKCSDDAATYRQIVEQKRLFKFFLGLNRELDDVRGRIMG 206
Query: 118 RDLSPSLDVCFKELLREEQR 137
PSL F E+ REE R
Sbjct: 207 IKPLPSLREAFSEVRREESR 226
>gi|38345241|emb|CAD41085.2| OSJNBb0011N17.2 [Oryza sativa Japonica Group]
Length = 1262
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/189 (21%), Positives = 94/189 (49%), Gaps = 13/189 (6%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYN-QDNTAKCFHLEYEIARYSQGDLSIQ 59
+ W++ S+ ++ ++ +A +MW+ L K+Y+ + N + +I+ QG+ S+
Sbjct: 102 VAWLLTSLIPAIATTVETISSASEMWKTLTKLYSGEGNVMLMVEAQEKISALRQGERSVA 161
Query: 60 NYLSGIQNLWAK--YVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMN 117
Y++ +++LW+ + D + ++ + +A ++ E+ + +FL L PE++ R + +
Sbjct: 162 EYVAELKSLWSDLDHYDPLGLEHS-DCIAKMKKWVERRRVIEFLKGLNPEFEGRRDAMFH 220
Query: 118 RDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCK 177
+ P+LD + +EE + + +L + YA GK +CF+C
Sbjct: 221 QTTLPTLDEAIAAMAQEELK---KKVLPSAAPCSPSPTYAIVQGK------ETRECFNCG 271
Query: 178 EYRHIIVNC 186
E H++ +C
Sbjct: 272 EMGHLMRDC 280
>gi|147774245|emb|CAN61417.1| hypothetical protein VITISV_009790 [Vitis vinifera]
Length = 332
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 95/215 (44%), Gaps = 23/215 (10%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
++WI+ S+ Q L ++ TA+++WE L+ ++Q N + F +E +IA +Q +++
Sbjct: 87 LSWILNSLSQDLADSVIFSTTAQEVWEDLRDRFSQSNAPRIFQIERDIACLTQDQMTVAA 146
Query: 61 YLSGIQNLW---AKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMN 117
Y + ++ LW Y D + H++ + QFLM L Y A R ++
Sbjct: 147 YYTRLKKLWDELGSYNDTV---------CSCGADHKRRRLMQFLMGLNESYNAIRGQILL 197
Query: 118 RDLSPSLDVCFKELLREEQRL---ATQTILQQNKM---HDNAIAYAAAHGKS-----KGR 166
+ P + + +++EE++ AT+ + + M +A A HG+
Sbjct: 198 MNPLPDVARAYSSIVQEEKQRSLGATRETTENSAMVVQRAEPMALAVRHGQGSSSRSNPS 257
Query: 167 DMRQVQCFSCKEYRHIIVNCAKKFCNYCKKPGHII 201
+ + + C C H+ C K + P H +
Sbjct: 258 NRKPLHCSYCDRDHHVRETCWKLNGYPPEHPKHAL 292
>gi|18378607|gb|AAL68641.1|AF458765_1 polyprotein [Oryza sativa Japonica Group]
Length = 1472
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/189 (21%), Positives = 94/189 (49%), Gaps = 13/189 (6%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYN-QDNTAKCFHLEYEIARYSQGDLSIQ 59
+ W++ S+ ++ ++ +A +MW+ L K+Y+ + N + +I+ QG+ S+
Sbjct: 103 VAWLLTSLIPAIATTVETISSASEMWKTLTKLYSGEGNVMLMVEAQEKISALRQGERSVA 162
Query: 60 NYLSGIQNLWAK--YVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMN 117
Y++ +++LW+ + D + ++ + +A ++ E+ + +FL L PE++ R + +
Sbjct: 163 EYVAELKSLWSDLDHYDPLGLEHS-DCIAKMKKWVERRRVIEFLKGLNPEFEGRRDAMFH 221
Query: 118 RDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCK 177
+ P+LD + +EE + + +L + YA GK +CF+C
Sbjct: 222 QTTLPTLDEAIAAMAQEELK---KKVLPSAAPCSPSPTYAIVQGK------ETRECFNCG 272
Query: 178 EYRHIIVNC 186
E H++ +C
Sbjct: 273 EMGHLMRDC 281
>gi|147816002|emb|CAN65808.1| hypothetical protein VITISV_033389 [Vitis vinifera]
Length = 1279
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 90/202 (44%), Gaps = 23/202 (11%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
++WI+ S+ Q L ++ TA+++WE L ++Q N + F +E +IA +Q +++
Sbjct: 87 LSWILNSLSQDLADSVIFSTTAQEVWEDLXDRFSQSNAPRIFXIEXDIACLTQDQMTVAA 146
Query: 61 YLSGIQNLW---AKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMN 117
Y + ++ LW Y D + H++ + QFLM L Y A R ++
Sbjct: 147 YYTRLKKLWDELGSYNDTV---------CSCGADHKRXRLMQFLMGLNESYNAIRGQILL 197
Query: 118 RDLSPSLDVCFKELLREEQRL---ATQTILQQNKM---HDNAIAYAAAHGKS-----KGR 166
+ P + + +++EE++ AT+ + + M +A A HG+
Sbjct: 198 MNPLPDVAKAYSSIVQEEKQRSLGATRETTENSAMVVQRAEPMALAVRHGQGSSSRSNPS 257
Query: 167 DMRQVQCFSCKEYRHIIVNCAK 188
+ + + C C H+ C K
Sbjct: 258 NRKPLHCSYCDRDHHVRETCWK 279
>gi|147771937|emb|CAN75698.1| hypothetical protein VITISV_035985 [Vitis vinifera]
Length = 1105
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 93/209 (44%), Gaps = 20/209 (9%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVY-NQDNTAKCFHLEYEIARYSQGDLSIQ 59
M+W++ S+++ + N Y A+++WE + ++Y N N ++ F L ++ + QG+ +I
Sbjct: 94 MSWLVNSMEEDISSNYMCYPIAQELWENVNQMYSNLGNQSQIFELTLKLGKIQQGEDNIT 153
Query: 60 NYLSGIQNLWAKYVDMIYVQVPIESLADVQGVH-----EQSKRDQFLMKLRPEYKAARSN 114
Y + + +W +D+ E + G+H E ++ +FL L E+ R
Sbjct: 154 KYFNSSKRIWQD-LDLFNT---YEWKSTEDGLHHKKTMEDNQIFKFLAGLNVEFDEVRGR 209
Query: 115 LMNRDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCF 174
++ R PS+ F + REE R + ++ K AI + G + V
Sbjct: 210 IIGRQPLPSIGEVFSXVRREESR---RNVMLGKKGXGVAIEGSXLVTTXGGYNKXXV--- 263
Query: 175 SCKEYRHIIVNCAKKFCNYCKKPGHIIKE 203
+ H + +C++C KP H E
Sbjct: 264 ----FXHKSDERPRVWCDFCNKPXHTRNE 288
>gi|147818359|emb|CAN62623.1| hypothetical protein VITISV_001656 [Vitis vinifera]
Length = 1394
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 93/208 (44%), Gaps = 21/208 (10%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVY-NQDNTAKCFHLEYEIARYSQGDLSIQ 59
M+W++ S+ + N + TAK++W+ K+ + +++NT++ +E + QG+L++
Sbjct: 85 MSWLVNSMTADIGENFLSFDTAKEIWDTAKETFSDKENTSEIIQIEGILHDLRQGNLTVT 144
Query: 60 NYLSGIQNLWAKYVDMIYVQ---VPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLM 116
Y + + LW + +D V I+S + + E + +FL+ L R +M
Sbjct: 145 EYFNTLTRLW-RQLDTFEVHNWNCVIDSFL-YKKIVEGKRVFKFLLGLNKNLDEIRGRIM 202
Query: 117 NRDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSC 176
PSL F E+ REE R + ++ + N + + D RQ
Sbjct: 203 GVKPLPSLREAFSEVRREESR---KNLMMGSHQQLNMAESSXLKTQFAPFDNRQK----- 254
Query: 177 KEYRHIIVNCAKKFCNYCKKPGHIIKEC 204
+ + +C++CKK GH + C
Sbjct: 255 -------IKGGRPWCDHCKKXGHSRETC 275
>gi|147787640|emb|CAN60829.1| hypothetical protein VITISV_012059 [Vitis vinifera]
Length = 1128
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 72/155 (46%), Gaps = 14/155 (9%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
++W+M S+ + + +L + A D+WE LK Y + + + F LE ++ SQ SI
Sbjct: 54 LSWLMNSIAKEIRGSLLYFTNAFDIWEELKIRYLRSDGPRVFSLEKSLSSISQNSKSITE 113
Query: 61 YLSGIQNLWAKYVDMIYVQVPI-----------ESLADVQGVHEQSKRDQFLMKLRPEYK 109
Y S + LW +Y+ Y +P L D+ + + +FLM L Y
Sbjct: 114 YFSEFKALWDEYIS--YHPIPSCRCGNLNRCSCNILKDLTDRQQSNYVMKFLMGLHDSYS 171
Query: 110 AARSNLMNRDLSPSLDVCFKELLREE-QRLATQTI 143
A RS L+ + S+ F LL+EE QR T +
Sbjct: 172 AIRSQLLPQSPLLSMSRVFSLLLQEESQRSLTNAV 206
>gi|2194136|gb|AAB61111.1| Strong similarity to Zea mays retrotransposon Hopscotch polyprotein
(gb|U12626) [Arabidopsis thaliana]
Length = 1315
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 91/208 (43%), Gaps = 27/208 (12%)
Query: 2 TWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNY 61
+W++ SV + + ++ + TA +W+ L +++ + + + L +I QG+L + +Y
Sbjct: 40 SWLLNSVSKEIYTSILYFPTAAAIWKDLYTRFHKSSLPRLYKLRQQIHSLRQGNLDLSSY 99
Query: 62 LSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRDLS 121
+ Q LW + + V +E D+ E ++ FLM L Y RS ++ +
Sbjct: 100 HTRTQTLWEELTSLQAVPRTVE---DLLIERETNRVIDFLMGLNDCYDTVRSQILMKKTL 156
Query: 122 PSLDVCFKELLREEQ----RLATQTILQQNKMH-DNAIAYAAAHGKSKGRDMRQVQCFSC 176
PSL F + ++E R++T + + N + +A +G + + R V
Sbjct: 157 PSLSEVFNMIDQDETQRSARISTTPGMTSSVFPVSNQSSQSALNGDTYQKKERPV----- 211
Query: 177 KEYRHIIVNCAKKFCNYCKKPGHIIKEC 204
C+YC +PGH+ C
Sbjct: 212 --------------CSYCSRPGHVEDTC 225
>gi|344178892|dbj|BAK64102.1| gag-pol polyprotein [Eustoma exaltatum subsp. russellianum]
Length = 1591
Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats.
Identities = 48/216 (22%), Positives = 99/216 (45%), Gaps = 20/216 (9%)
Query: 2 TWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVY-NQDNTAKCFHLEYEIARYSQGDLSIQN 60
TWI+ +VD S++ N+ Y TAK +W+ L Y ++ ++ + F L + QGD +++
Sbjct: 107 TWILQNVDASMINNVSRYPTAKALWDGLALTYGSRGDSLQVFDLHRKANNIRQGDDTLEA 166
Query: 61 YLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRD----QFLMKLRPEYKAARSNLM 116
+ +Q++W +D + P++ D+ ++ Q ++ QFL + ++ + L+
Sbjct: 167 CWNNLQDIWVS-IDTLDTN-PMKCPEDIS-LYNQKMQEFRLYQFLTAVSDRFETEKKELL 223
Query: 117 NRDLSPSLDVCFKELLREEQRLA------TQTILQQNKMHDNAIAYAAAHGKSKG--RDM 168
R P+++ F E R E + ++ I + A G+ KG R M
Sbjct: 224 KRTPLPNVEAAFFEFKRAESQAGLIKHGPSEQISSLGIGQGLTVKPATGKGRGKGTDRSM 283
Query: 169 RQVQCFSCKEYRHIIVNCAKKFCNYCKKPGHIIKEC 204
++ + ++ + C +C K GH ++C
Sbjct: 284 NTIRSNNASSR----MDKSNLLCEHCGKKGHSREKC 315
>gi|31249714|gb|AAP46207.1| putative retrotransposon protein [Oryza sativa Japonica Group]
Length = 1176
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/189 (21%), Positives = 94/189 (49%), Gaps = 13/189 (6%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYN-QDNTAKCFHLEYEIARYSQGDLSIQ 59
+ W++ S+ ++ ++ +A +MW+ L K+Y+ + N + +I+ QG+ S+
Sbjct: 103 VAWLLTSLIPAIATTVETISSASEMWKTLTKLYSGEGNVMLMVEAQEKISALRQGERSVA 162
Query: 60 NYLSGIQNLWAK--YVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMN 117
Y++ +++LW+ + D + ++ + +A ++ E+ + +FL L PE++ R + +
Sbjct: 163 EYVAELKSLWSDLDHYDPLGLEHS-DCIAKMKKWVERRRVIEFLKGLNPEFEGRRDAMFH 221
Query: 118 RDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCK 177
+ P+LD + +EE + + +L + YA GK +CF+C
Sbjct: 222 QTTLPTLDEAIAAMAQEELK---KKVLPSAAPCSPSPTYAIVQGK------ETRECFNCG 272
Query: 178 EYRHIIVNC 186
E H++ +C
Sbjct: 273 EMGHLMRDC 281
>gi|356577871|ref|XP_003557045.1| PREDICTED: uncharacterized protein LOC100783177 [Glycine max]
Length = 2219
Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats.
Identities = 47/212 (22%), Positives = 96/212 (45%), Gaps = 29/212 (13%)
Query: 2 TWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNY 61
+WI+ SV+ S+ ++ A D+W LK+ ++Q + + ++ EI +QG S+ +
Sbjct: 283 SWILNSVEPSISRSIVFMDNASDVWLDLKERFSQGDLVRVSEIQQEIYALTQGTRSVTTF 342
Query: 62 LSGIQNLWAKYVDMIYVQVP---------IESLADVQGVHEQSKRDQFLMKLRPEYKAAR 112
S ++ LW + IY+ +P +++ + H +FL L E+ A +
Sbjct: 343 YSDLKALWEEL--EIYMPIPNCTCHHRCSCDAMRLARRHHHTLHVMRFLTGLNDEFNAVK 400
Query: 113 SNLMNRDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQ 172
S ++ + PS+ F +++ E++ L +K NA + + + G + GR
Sbjct: 401 SQILLIEPLPSITKIFSMVIQFERQNCVPN-LDDSKALVNA-STSKSQGSANGRSN---- 454
Query: 173 CFSCKEYRHIIVNCAKKFCNYCKKPGHIIKEC 204
+ +K++C YC K H ++ C
Sbjct: 455 ------------SGSKRYCTYCHKTNHFVENC 474
>gi|356566454|ref|XP_003551446.1| PREDICTED: uncharacterized protein LOC100819074 [Glycine max]
Length = 1750
Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats.
Identities = 47/212 (22%), Positives = 96/212 (45%), Gaps = 29/212 (13%)
Query: 2 TWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNY 61
+WI+ SV+ S+ ++ A D+W LK+ ++Q + + ++ EI +QG S+ +
Sbjct: 90 SWILNSVEPSISRSIVFMDNASDVWLDLKERFSQGDLVRVSEIQQEIYALTQGTRSVTTF 149
Query: 62 LSGIQNLWAKYVDMIYVQVP---------IESLADVQGVHEQSKRDQFLMKLRPEYKAAR 112
S ++ LW + IY+ +P +++ + H +FL L E+ A +
Sbjct: 150 YSDLKALWEEL--EIYMPIPNCTCHHRCSCDAMRLARRHHHTLHVMRFLTGLNDEFNAVK 207
Query: 113 SNLMNRDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQ 172
S ++ + PS+ F +++ E++ L +K NA + + + G + GR
Sbjct: 208 SQILLIEPLPSITKIFSMVIQFERQNCVPN-LDDSKALVNA-STSKSQGSANGRSN---- 261
Query: 173 CFSCKEYRHIIVNCAKKFCNYCKKPGHIIKEC 204
+ +K++C YC K H ++ C
Sbjct: 262 ------------SGSKRYCTYCHKTNHFVENC 281
>gi|7267643|emb|CAB78071.1| putative protein [Arabidopsis thaliana]
Length = 290
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 85/167 (50%), Gaps = 14/167 (8%)
Query: 2 TWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNY 61
TW+M SV + + +L TA+ +W+ L + QD+ + F +E + QG + + Y
Sbjct: 84 TWLMNSVSKKIGQSLLFMSTAESIWKNLLSRFKQDDAPRVFEIEQRLGSLQQGSMDVSTY 143
Query: 62 LSGIQNLWAKYVDMIYVQVPI--------ESLADVQGVHEQSKRDQFLMKLRPEYKAARS 113
+ + LW +Y + Y+++P+ + A + + ++S+ +FLM L Y+A +
Sbjct: 144 YTELVTLWEEYKN--YIELPLCTCGRCECNASALWEKMQQRSRVTKFLMGLNEAYEATQR 201
Query: 114 NLMNRDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAH 160
+++ P+++ F + ++E++ + + + + DN +++H
Sbjct: 202 HILMLKPIPTIEDVFNMVAQDERQKSIKPVAKM----DNVAFQSSSH 244
>gi|147797686|emb|CAN63081.1| hypothetical protein VITISV_016842 [Vitis vinifera]
Length = 1179
Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 48/207 (23%), Positives = 82/207 (39%), Gaps = 40/207 (19%)
Query: 7 SVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLSGIQ 66
SVD ++L+L+ YKT W K +Y D + + + I Q D+ + Y+ I
Sbjct: 38 SVDPKILLHLRAYKTCFKFWNQAKGLYTND-IQRLYKVASSIVNVRQQDMDLSTYIGQIA 96
Query: 67 NLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLM-----KLRPEYKAARSNLMNRDLS 121
+L +++ ++ + + ++++ D+F M LRP+ + R ++
Sbjct: 97 SLKEEFLTVMPLTTDVGD--------QRTQIDKFFMVLTLIGLRPDLETVRDQILGSSSV 148
Query: 122 PSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYA----AAHGKSKGRDMRQVQCFSCK 177
PSLD F LLR +TQT+ N + + H ++GR R
Sbjct: 149 PSLDDVFAHLLRIS---STQTLSSDNTSDSSVLVSQTNSRGGHSGNRGRGQR-------- 197
Query: 178 EYRHIIVNCAKKFCNYCKKPGHIIKEC 204
C YC K GH C
Sbjct: 198 -----------PHCTYCNKLGHTRDRC 213
>gi|147828418|emb|CAN77708.1| hypothetical protein VITISV_037394 [Vitis vinifera]
Length = 758
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 90/209 (43%), Gaps = 42/209 (20%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQ-DNTAKCFHLEYEIARYSQGDLSIQ 59
M+W++ S++ + N + TAKD+W+ K+ Y+ +NT++ F +E + + QG+ ++
Sbjct: 307 MSWLINSMNNDIGENFLLFGTAKDIWDAAKETYSSFENTSELFQVESALHDFRQGEQTVT 366
Query: 60 NYLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRD 119
Y + + +++Q + Q + L E RS +M
Sbjct: 367 QYYNTLT-------------------SNIQENCGTKETVQVFLGLNRELDDVRSRIMGIK 407
Query: 120 LSPSLDVCFKELLREEQRLATQTILQQNKMHD----NAIAYAAAHGKSKGRDMRQVQCFS 175
PSL F E+ REE R + ++ +K +A A AA S G D ++
Sbjct: 408 PLPSLREAFSEVRREESR---KKVMMGSKEQPAPTLDASALAARSFNSSGGDRQKRD--- 461
Query: 176 CKEYRHIIVNCAKKFCNYCKKPGHIIKEC 204
+ +C+YCKK GH + C
Sbjct: 462 ------------RPWCDYCKKLGHYKETC 478
>gi|116309912|emb|CAH66946.1| B0809H07.1 [Oryza sativa Indica Group]
Length = 1120
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/189 (21%), Positives = 92/189 (48%), Gaps = 13/189 (6%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYN-QDNTAKCFHLEYEIARYSQGDLSIQ 59
+ W++ S+ ++ ++ +A +MW+ L +Y+ + N + +I+ QG+ S+
Sbjct: 103 VAWLLTSLIPAIATTVETISSASEMWKTLTNLYSGEGNVMLMVEAQEKISVLRQGERSVA 162
Query: 60 NYLSGIQNLWAK--YVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMN 117
Y++ +++LW+ + D + ++ P + +A ++ E+ + +FL L E++ R + +
Sbjct: 163 EYVAELKHLWSDLDHYDPLGLEHP-DCIAKMRKWIERRRVIEFLKGLNSEFEGRRDAMFH 221
Query: 118 RDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCK 177
+ PSLD + +EE + + +L + Y A K +CF+C
Sbjct: 222 QTTLPSLDEAIAAMAQEELK---KKVLPSATPSSPSPTYVVAQSK------ETRECFNCG 272
Query: 178 EYRHIIVNC 186
E H+I +C
Sbjct: 273 EMGHLIRDC 281
>gi|8777581|dbj|BAA97099.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
Length = 1098
Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats.
Identities = 48/203 (23%), Positives = 87/203 (42%), Gaps = 9/203 (4%)
Query: 3 WIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYL 62
WI S+D ++ + AKD+W+ LK+ ++ N + L+ EI Q S+ Y
Sbjct: 82 WIRTSIDPTIRSTVAFVSDAKDLWDSLKQRFSNGNGVRKQLLKDEILACKQDGQSVLVYY 141
Query: 63 SGIQNLWAKYVDMIYVQV-PIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRDLS 121
+ LW + + + E+ D+ E K QFL+ L ++ RS + +D
Sbjct: 142 GRLTKLWEELQNYKTSRTCTCEAAPDIAKEREDDKVHQFLLNLDERFRPIRSTITVQDPL 201
Query: 122 PSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRH 181
P+L+ + ++ EEQ L I ++ + A+ + + QV S +R
Sbjct: 202 PALNQVYSRVIHEEQNLNASRI--KDDIKTEAVGFTVQ--ATPLPPTPQVAAVSAPRFR- 256
Query: 182 IIVNCAKKFCNYCKKPGHIIKEC 204
+ + C + + GH I EC
Sbjct: 257 ---DRSSLTCTHYHRQGHDITEC 276
>gi|71834720|gb|AAZ41812.1| 01P13-2 [Brassica rapa subsp. pekinensis]
Length = 558
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/233 (23%), Positives = 105/233 (45%), Gaps = 22/233 (9%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVY-NQDNTAKCFHLEYEIARYSQGDLSIQ 59
MT + S+D +++ ++AK++W+ LKKV+ N N ++ F ++ I R +Q D+
Sbjct: 75 MTVLHASLDPAILDAYSYCESAKELWDTLKKVHGNTSNLSRVFEVKLAINRLAQEDMEFT 134
Query: 60 NYLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQ---FLMKLRPEYKAARSNLM 116
+L ++LW++ +++ S D ++E+ ++D+ L+ L P Y +++
Sbjct: 135 KHLGRFRSLWSE------LEMLRPSTTDPDQLNERREQDKVFGLLLTLNPAYTQLIQHML 188
Query: 117 NRDLSPSLDVCFKELLREEQRLA-----TQTILQQNKMHDNAI----AYAAAHGKSKGRD 167
D P L+ ++ RE+ + + L H+++ A A+HGK + R
Sbjct: 189 RSDKLPDLEEVCAQIQREQGSMGLFGGKGELSLANQAAHEDSTEAPQANKASHGKYEDRK 248
Query: 168 MRQVQCFSCKEYRHIIVNCAKKFCNYCKKPGHIIKECPTRPQNCQASQAVVAS 220
C CK++ H C + KP +KE R + S S
Sbjct: 249 FNG-NCDHCKKHGHKKSQCW--ILHPHLKPAKFMKEREGRANVTEGSSGASTS 298
>gi|52075807|dbj|BAD45287.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 144
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 68/140 (48%), Gaps = 6/140 (4%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
M I+ SV SL+++L ++TAK +W LK+ Y QD+ A L + Q D+SI
Sbjct: 1 MAAIVNSVKHSLIVSLSKFQTAKAIWGSLKQRYVQDSGALLHTLMQQTHAIEQNDMSIDE 60
Query: 61 YLSGIQNLWAKYVDMIYVQVPIESLA--DVQGVHEQSKRDQFLMKLRPEYKAARSNLMNR 118
Y S L M VP + A E+ +F+M +R ++ + R+ L++
Sbjct: 61 YYSAFDRLMGSLTSM----VPACTTAACPAHQFLEKFLTYRFVMGVREDFDSIRTRLLHS 116
Query: 119 DLSPSLDVCFKELLREEQRL 138
+ ++ + +LL EE RL
Sbjct: 117 SSTLTMALALSDLLAEETRL 136
>gi|147777583|emb|CAN69307.1| hypothetical protein VITISV_001120 [Vitis vinifera]
Length = 1215
Score = 60.8 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 49/203 (24%), Positives = 84/203 (41%), Gaps = 44/203 (21%)
Query: 7 SVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLSGIQ 66
SVD ++L+L+ YKT W K +Y D + + + I SQ DL + Y+ I
Sbjct: 78 SVDPKILLHLRAYKTCFKFWTQTKGLYTND-IQRLYKVASAIVHISQQDLDLSTYIGQIA 136
Query: 67 NLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQF-----LMKLRPEYKAARSNLMNRDLS 121
+L +++ ++ P+ Q Q++ D+F L+ LRP+ + R ++
Sbjct: 137 SLKEEFLTVM----PLTPDVGAQ----QTQLDKFFVVLTLIGLRPDLEPVRDQILGSSSV 188
Query: 122 PSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRH 181
PSLD F L R+++ L + + D+++ ++GR R
Sbjct: 189 PSLDDVFARL----HRISSTQTLPSDSISDSSVG-------NRGRGQR------------ 225
Query: 182 IIVNCAKKFCNYCKKPGHIIKEC 204
C YC K GH C
Sbjct: 226 -------PHCTYCNKLGHTRDRC 241
>gi|147819068|emb|CAN65182.1| hypothetical protein VITISV_029570 [Vitis vinifera]
Length = 1002
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 88/197 (44%), Gaps = 11/197 (5%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
++W++ SV + + +L T ++W L+ + Q N F L ++ QG L I
Sbjct: 3 ISWLLNSVSREIADSLMYIATTSEIWMDLRDQFRQSNAHWIFQLRKQLIALQQGGLDINT 62
Query: 61 YLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRD---QFLMKLRPEYKAARSNLMN 117
Y + + LW + + + +P +Q E +++ QFLM L Y RS ++
Sbjct: 63 YYTRFKVLWEELKN--FQPLPACHCGGMQAWVEYQQQEHVIQFLMGLNDSYSQTRSQILM 120
Query: 118 RDLSPSLDVCFKELLREE-QRLATQ---TILQQNKMHDNAIAYAAAH-GKSKGRD-MRQV 171
+ P L F +L+EE QR Q ++LQ + D++ A A H G S + +
Sbjct: 121 MEPIPPLAKVFALVLQEERQRSINQGFSSLLQPLALGDSSQASANTHIGSSASKPKFERP 180
Query: 172 QCFSCKEYRHIIVNCAK 188
QC C H + C K
Sbjct: 181 QCTHCGLQGHAMDRCYK 197
>gi|147776446|emb|CAN67362.1| hypothetical protein VITISV_001157 [Vitis vinifera]
Length = 1259
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 88/209 (42%), Gaps = 45/209 (21%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVY-NQDNTAKCFHLEYEIARYSQGDLSIQ 59
M+W++ S++ + N + TAKD+W+ K+ Y + +N ++ F +E + + QG+ S+
Sbjct: 88 MSWLINSMNNDMGENFLLFGTAKDIWDAAKETYSSSENISELFQVESALHDFRQGEQSVT 147
Query: 60 NYLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRD 119
Y + + + + EQ + +F + L E R +M
Sbjct: 148 QYYNTL----------------------TRQIVEQKRLFKFFLGLNRELDDVRGRIMGIK 185
Query: 120 LSPSLDVCFKELLREEQRLATQTILQQNKMHD----NAIAYAAAHGKSKGRDMRQVQCFS 175
PSL F E+ REE R + ++ +K + A AA S G D ++
Sbjct: 186 PLPSLREAFLEVRREESR---KKVMMGSKEQSAPTLDGSALAARSFNSNGGDRQKRD--- 239
Query: 176 CKEYRHIIVNCAKKFCNYCKKPGHIIKEC 204
+ +C+YCKK GH + C
Sbjct: 240 ------------RPWCDYCKKLGHYKEAC 256
>gi|147778633|emb|CAN76111.1| hypothetical protein VITISV_005526 [Vitis vinifera]
Length = 825
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 73/142 (51%), Gaps = 9/142 (6%)
Query: 2 TWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNY 61
+WI+ +++ +V N+ Y TA ++WE L++ ++Q N + F ++ +IA Q LS+ Y
Sbjct: 42 SWIVNTLNPEIVDNVIYYSTAYEVWEDLRERFSQSNAHRIFEIQQDIACLRQEQLSVSAY 101
Query: 62 LSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRDLS 121
+ ++ LW + ++A + +Q K QFLM L Y A R ++ +
Sbjct: 102 YTKLKGLWDELASY--------NVAPHRAQQDQQKLMQFLMGLNESYSAIRGQILLMNPL 153
Query: 122 PSLDVCFKELLREEQR-LATQT 142
PS+ + + +EE+ L T T
Sbjct: 154 PSVLQAYSSVSQEEKHCLLTST 175
>gi|125525618|gb|EAY73732.1| hypothetical protein OsI_01607 [Oryza sativa Indica Group]
Length = 217
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 68/140 (48%), Gaps = 6/140 (4%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
M I+ SV SL+++L ++TAK +W LK+ Y QD+ A L + Q D+SI
Sbjct: 74 MAAIVNSVKHSLIVSLSKFQTAKAIWGSLKQRYVQDSGALLHTLMQQTHAIEQNDMSIDE 133
Query: 61 YLSGIQNLWAKYVDMIYVQVPIESLA--DVQGVHEQSKRDQFLMKLRPEYKAARSNLMNR 118
Y S L M VP + A E+ +F+M +R ++ + R+ L++
Sbjct: 134 YYSAFDRLMGSLTSM----VPACTTAACPAHQFLEKFLTYRFVMGVREDFDSIRTRLLHS 189
Query: 119 DLSPSLDVCFKELLREEQRL 138
+ ++ + +LL EE RL
Sbjct: 190 SSTLTMALALSDLLAEETRL 209
>gi|147795000|emb|CAN76332.1| hypothetical protein VITISV_006269 [Vitis vinifera]
Length = 850
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 84/209 (40%), Gaps = 56/209 (26%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQ-DNTAKCFHLEYEIARYSQGDLSIQ 59
M+W++ S++ + N + TAKD+W+ K +Y+ +N + F +E + + QG+
Sbjct: 50 MSWLINSMNNDIGENFLLFGTAKDIWDAAKXIYSSFENXLEXFQVELXLHXFRQGE---- 105
Query: 60 NYLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRD 119
Q + EQ + +F + L E R +M
Sbjct: 106 -----------------------------QQIVEQKRLFKFFLGLNRELDDVRGRIMGIK 136
Query: 120 LSPSLDVCFKELLREEQRLATQTILQQNKMHD----NAIAYAAAHGKSKGRDMRQVQCFS 175
PSL F E+ REE R + ++ +K +A A AA S G D ++
Sbjct: 137 PLPSLREAFSEVRREESR---KKVMMGSKEQPAPTLDASALAARSFNSSGGDRQKRD--- 190
Query: 176 CKEYRHIIVNCAKKFCNYCKKPGHIIKEC 204
+ +C+YCKKPGH + C
Sbjct: 191 ------------RPWCDYCKKPGHYKETC 207
>gi|66841323|dbj|BAD99219.1| polypeptide with a gag-like domain [Petunia x hybrida]
Length = 463
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/216 (22%), Positives = 96/216 (44%), Gaps = 15/216 (6%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
+ W++ S+ + + ++ +TA+++W+ L++ Y Q + K F L+ E+ SQG +
Sbjct: 104 LAWLLNSLSKEIAESVLYSQTAQELWQELEQRYGQIDGTKMFQLQRELNNVSQGTNDVAA 163
Query: 61 YLSGIQNLWAKY-VDMIYVQVPIESLADVQGVHEQSKRD----QFLMKLRPEYKAARSNL 115
Y + ++ +W + V ++ E + +G + + + D QFLM L Y R N+
Sbjct: 164 YFNKLKRIWDQMKVLNTFMVCSCECNCEAKGHNAKMQEDQQLIQFLMGLNEVYSGIRGNI 223
Query: 116 MNRDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAA----HGKSKGRD---M 168
+ PS + + EE + + I N + ++ A+ A+ + + D
Sbjct: 224 LMMKPLPSTAQAYSIISHEETQ---RGIAAGNNVSTDSAAFNASTQNWNNQRNNYDNRAR 280
Query: 169 RQVQCFSCKEYRHIIVNCAKKFCNYCKKPGHIIKEC 204
Q Y N +C YC+ GH+ +EC
Sbjct: 281 NQNYNNRRNNYEGRRSNQNNSYCTYCRTSGHVREEC 316
>gi|147816075|emb|CAN66087.1| hypothetical protein VITISV_044185 [Vitis vinifera]
Length = 878
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 93/208 (44%), Gaps = 21/208 (10%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVY-NQDNTAKCFHLEYEIARYSQGDLSIQ 59
M+W++ S+ + N + TAK++W+ K+ + +++NT++ +E + QG+L++
Sbjct: 257 MSWLVNSMTADIGENFLSFDTAKEIWDIAKETFSDKENTSEIIQIEGILHDLRQGNLTVT 316
Query: 60 NYLSGIQNLWAKYVDMIYVQVPIESLAD---VQGVHEQSKRDQFLMKLRPEYKAARSNLM 116
Y + + LW + +D V + D + + E + +FL+ L R +M
Sbjct: 317 KYFNILTRLW-RQLDTFEVH-NWNCVTDGFLYKKIVEGKRVFKFLLGLNKNLDEIRGRIM 374
Query: 117 NRDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSC 176
PSL F E+ REE + + ++ + N A + D RQ
Sbjct: 375 GVKPLPSLREAFSEVRREE---SPKNLMMGSHQQLNMAESLALKTQFAPFDNRQK----- 426
Query: 177 KEYRHIIVNCAKKFCNYCKKPGHIIKEC 204
+ + +C++C+KPGH + C
Sbjct: 427 -------IKGGRPWCDHCRKPGHSRETC 447
>gi|4206207|gb|AAD11595.1| putative reverse transcriptase [Arabidopsis thaliana]
gi|4263040|gb|AAD15309.1| putative reverse transcriptase [Arabidopsis thaliana]
gi|7270676|emb|CAB77838.1| putative reverse transcriptase [Arabidopsis thaliana]
Length = 374
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 91/204 (44%), Gaps = 19/204 (9%)
Query: 2 TWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNY 61
+W++ SV + + ++ + TA +W+ L +++ + + + L +I QG+L + +Y
Sbjct: 138 SWLLNSVSKEIYTSILYFPTAAAIWKDLYTRFHKSSLPRLYKLRQQIHSLRQGNLDLSSY 197
Query: 62 LSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRDLS 121
+ Q LW ++ +Q ++ D+ E ++ FLM L Y A RS ++ +
Sbjct: 198 HTRKQTLWE---ELTSLQAIPRTVEDLLIERETNRVIDFLMGLNDCYDAVRSQILMKKTL 254
Query: 122 PSLDVCFKELLREE-QRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYR 180
PSL F + ++E QR A I M + A + +S + + KE
Sbjct: 255 PSLSEVFNMIDQDEIQRSAR--ISTTPGMTSSVFAVSNQSSQS----VLNGDTYQKKE-- 306
Query: 181 HIIVNCAKKFCNYCKKPGHIIKEC 204
+ C YC +PGH+ C
Sbjct: 307 -------RPVCTYCSRPGHVEDTC 323
>gi|125597688|gb|EAZ37468.1| hypothetical protein OsJ_21801 [Oryza sativa Japonica Group]
Length = 172
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 68/143 (47%), Gaps = 9/143 (6%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
M ++ S + + +N +AK MWEYL++ Y Q + A F L + QGD++I+
Sbjct: 1 MAFLCMSAEVPIRMNFIDLSSAKKMWEYLQQRYQQSSAALRFSLRKSLQSLEQGDMTIEE 60
Query: 61 YLSGIQNLWAKYVDMIYVQVPIESLADVQGV-----HEQSKRDQFLMKLRPEYKAARSNL 115
+ + +L + M VP Q + EQS F+M+LR +++ R L
Sbjct: 61 FHNAFTSLSRQLDSM----VPKAGGGCRQCICKEKYEEQSLMFDFVMRLRLDFEPIRVQL 116
Query: 116 MNRDLSPSLDVCFKELLREEQRL 138
+ R P++ +L+ EE RL
Sbjct: 117 LGRSTLPTMAEALADLIAEETRL 139
>gi|147801872|emb|CAN63908.1| hypothetical protein VITISV_044218 [Vitis vinifera]
Length = 1236
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 90/202 (44%), Gaps = 23/202 (11%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
++WI+ S+ Q L ++ TA+++WE L+ ++Q N F +E +IA +Q +++
Sbjct: 87 LSWILNSLSQDLADSVIFSTTAQEVWEDLRDRFSQTNAPHIFQIERDIACLTQDQMTVAA 146
Query: 61 YLSGIQNLW---AKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMN 117
Y + ++ LW Y D + H++ + QFLM L Y A R ++
Sbjct: 147 YYTRLKKLWDELGSYNDTV---------CSCGADHKRRRLMQFLMGLNESYNAIRGQILL 197
Query: 118 RDLSPSLDVCFKELLREEQRL---ATQTILQQNKM---HDNAIAYAAAHGKS-----KGR 166
+ P + + +++EE++ AT+ + + + M +A HG+
Sbjct: 198 MNPLPDVAKAYSSIVQEEKQRSLGATREMTENSAMVIRRAEPMALVVRHGQGSSSRSNPS 257
Query: 167 DMRQVQCFSCKEYRHIIVNCAK 188
+ + + C C H+ C K
Sbjct: 258 NRKPLHCSYCDRDHHVRETCWK 279
>gi|222618298|gb|EEE54430.1| hypothetical protein OsJ_01497 [Oryza sativa Japonica Group]
Length = 170
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 68/140 (48%), Gaps = 6/140 (4%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
M I+ SV SL+++L ++TAK +W LK+ Y QD+ A L + Q D+SI
Sbjct: 27 MAAIVNSVKHSLIVSLSKFQTAKAIWGSLKQRYVQDSGALLHTLMQQTHAIEQNDMSIDE 86
Query: 61 YLSGIQNLWAKYVDMIYVQVPIESLA--DVQGVHEQSKRDQFLMKLRPEYKAARSNLMNR 118
Y S L M VP + A E+ +F+M +R ++ + R+ L++
Sbjct: 87 YYSAFDRLMGSLTSM----VPACTTAACPAHQFLEKFLTYRFVMGVREDFDSIRTRLLHS 142
Query: 119 DLSPSLDVCFKELLREEQRL 138
+ ++ + +LL EE RL
Sbjct: 143 SSTLTMALALSDLLAEETRL 162
>gi|147797381|emb|CAN69170.1| hypothetical protein VITISV_015593 [Vitis vinifera]
Length = 384
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 85/200 (42%), Gaps = 32/200 (16%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVY-NQDNTAKCFHLEYEIARYSQGDLSIQ 59
M+W++ S++ ++ N Y T K++W+ ++ Y N +NT++ F +E + QGDLS+
Sbjct: 38 MSWLINSMNTNIGENFLLYGTTKEIWDAARETYSNSENTSEIFEIEATLHDLRQGDLSVT 97
Query: 60 NYLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRD 119
Y + + W +++DM + + D L + K +M
Sbjct: 98 QYFNILSRHW-QHLDMFEIHT------------WKCPEDTTLYR-----KIVEGRVMGTK 139
Query: 120 LSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEY 179
PS+ F E+ REE R Q + + A AA R+ + E
Sbjct: 140 PLPSIREAFSEVYREESRKKVMMGSQNSALSIEGSALAA----------REPPANTNSEN 189
Query: 180 RHIIVNCAKKFCNYCKKPGH 199
R + +C++C+K GH
Sbjct: 190 RQ---KKGRPWCDHCRKLGH 206
>gi|357515301|ref|XP_003627939.1| Flavonol sulfotransferase-like protein [Medicago truncatula]
gi|355521961|gb|AET02415.1| Flavonol sulfotransferase-like protein [Medicago truncatula]
Length = 640
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 94/214 (43%), Gaps = 26/214 (12%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
M+W+ SVD + ++ TA ++W LK+ + Q + + L+ EI QG+ SI +
Sbjct: 80 MSWLSNSVDPQISQSILWMDTALEIWNELKERFYQGDIFRISDLQEEIYTLKQGESSISS 139
Query: 61 YLSGIQNLWAKYVDMIYVQVPIESLAD----VQGVHEQSKRDQ---FLMKLRPEYKAARS 113
Y + ++ LW + ++ +P + D + + E DQ FL L ++ A RS
Sbjct: 140 YYTKMKKLWQELDNV--RPIPTSNCVDDCKAIAKMREYKDSDQVIRFLKGLNEQFSAVRS 197
Query: 114 NLMNRDLSPSLDVCFKELLREEQRLA-----TQTILQQNKMHDNAIAYAAAH-------- 160
+M D PS+ + L+++E+++ ++ + N +Y H
Sbjct: 198 QIMLMDPLPSIGKVYYLLVQQERQVVIPLDESKLLAVSNNSFSGHSSYGRGHMNASRGSG 257
Query: 161 ---GKSK-GRDMRQVQCFSCKEYRHIIVNCAKKF 190
G+S GR C C + H + C KK+
Sbjct: 258 DRGGRSSYGRGKGIRACSFCGKSNHTVDTCFKKY 291
>gi|147781357|emb|CAN64965.1| hypothetical protein VITISV_002893 [Vitis vinifera]
Length = 2136
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 77/155 (49%), Gaps = 11/155 (7%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQ-GDLSIQ 59
+TWI + S+ L + AK W+ L K Y+ + + + L E+ + Q SI
Sbjct: 229 LTWIRNTSIPSISNLLGSFDDAKSAWDILAKRYSTTHGSMKYQLVVELHQLRQEPGQSIN 288
Query: 60 NYLSGIQNLWAKYVDMIYVQVPIES-LADVQ---GVHEQSKRDQFLMKLRPEYKAARSNL 115
+Y ++ +W D I + P + L D Q + ++ + +FLM L +++ L
Sbjct: 289 DYYDQLRFIW----DQINLSDPTWACLKDAQQYASIRDEFRLYEFLMSLHKDFEPIHGQL 344
Query: 116 MNRDLSPSLDVCFKELLREEQRLATQTILQQNKMH 150
+NR + SLD EL+REE RLA T+ QN+++
Sbjct: 345 LNRSPTSSLDTAVNELVREEARLA--TLQAQNRLN 377
>gi|147773401|emb|CAN73437.1| hypothetical protein VITISV_031733 [Vitis vinifera]
Length = 1322
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 91/202 (45%), Gaps = 23/202 (11%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
++WI+ S+ Q L ++ TA+++WE L+ ++Q N + F +E IA +Q +++
Sbjct: 41 LSWILNSLSQDLADSVIFSTTAQEVWEDLRDRFSQSNAPRIFQIERGIACLTQDQMTVAA 100
Query: 61 YLSGIQNLW---AKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMN 117
Y + ++ LW Y D + +++ + QFLM L Y A R ++
Sbjct: 101 YYTRLKKLWDELGSYNDTV---------CSCGADYKRRRLMQFLMGLNESYNAIRGQILL 151
Query: 118 RDLSPSLDVCFKELLREEQRL---ATQTILQQNKM---HDNAIAYAAAHGKS-----KGR 166
+ P++ + +++EE++ AT+ + + M +A A HG+
Sbjct: 152 MNPLPNVAKAYSSIVQEEKQRSLGATRETTENSAMVVRRAEPMALAVRHGQGSSSRSNPS 211
Query: 167 DMRQVQCFSCKEYRHIIVNCAK 188
+ + + C C H+ C K
Sbjct: 212 NRKPLHCSYCDRDHHVRETCWK 233
>gi|147771338|emb|CAN65095.1| hypothetical protein VITISV_011639 [Vitis vinifera]
Length = 1377
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 93/208 (44%), Gaps = 21/208 (10%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVY-NQDNTAKCFHLEYEIARYSQGDLSIQ 59
M+W++ S+ + N + TAK++W+ K+ + +++NT++ +E + QG+L++
Sbjct: 85 MSWLVNSMTTDIGENFLSFDTAKEIWDIAKETFSDKENTSEIIQIEGILHDLRQGNLTVT 144
Query: 60 NYLSGIQNLWAKYVDMIYVQ---VPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLM 116
Y + + LW + +D V + L + + E + +FL+ L + +M
Sbjct: 145 EYFNTLTRLWHQ-LDTFEVHNWNCVTDGLL-YKKIVEGKRVFKFLLGLNKNLDEIKGRIM 202
Query: 117 NRDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSC 176
PSL F E+ REE R + ++ + N +A + D RQ
Sbjct: 203 GVKPLPSLREAFSEVRREESR---KNLMMGSHQQLNMAESSALKTQFAPFDNRQK----- 254
Query: 177 KEYRHIIVNCAKKFCNYCKKPGHIIKEC 204
+ + +C++C+KP H + C
Sbjct: 255 -------IKGGRPWCDHCRKPRHSRETC 275
>gi|147806431|emb|CAN67620.1| hypothetical protein VITISV_004593 [Vitis vinifera]
Length = 326
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 75/153 (49%), Gaps = 6/153 (3%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQ-DNTAKCFHLEYEIARYSQGDLSIQ 59
M W++ S+D+ + N Y TAK++W+ + +Y+ N ++ F L ++ QG+ S+
Sbjct: 84 MMWLVNSMDEDISSNYLCYPTAKELWDNINLMYSDLGNQSQIFELTLKLGEIRQGNDSVT 143
Query: 60 NYLSGIQNLWAK---YVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLM 116
Y + ++ LW Y D Y E+ + E ++ +FL+ L E+ + ++
Sbjct: 144 KYFNSLKRLWQDLNLYND--YEWKSPENCNQHKKTMEDNRIYKFLVGLNVEFDEVQGRII 201
Query: 117 NRDLSPSLDVCFKELLREEQRLATQTILQQNKM 149
R PS+ F E+ REE A + Q++M
Sbjct: 202 GRSPLPSISNVFSEVRREENIAANKASNYQHRM 234
>gi|147834281|emb|CAN67490.1| hypothetical protein VITISV_035976 [Vitis vinifera]
Length = 527
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 90/224 (40%), Gaps = 55/224 (24%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQ-GDLSIQ 59
+TWI + S+ L + AK W+ L K Y+ + + + L E+ + Q SI
Sbjct: 30 LTWIRNTSIPSISNLLGSFDDAKSAWDMLAKRYSTTHGSMKYQLVVELHQLKQEPGQSIN 89
Query: 60 NYLSGIQNLWAKYVDMIYVQVPIESLA-DVQ---GVHEQSKRDQFLMKLRPEYKAARSNL 115
+Y ++ +W D I + P + + D Q + ++ + +FLM L +++ R L
Sbjct: 90 DYYDQLRFIW----DQIDLSDPTWACSKDAQQYASIRDEFRLYEFLMSLHKDFEPIRGQL 145
Query: 116 MNRDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFS 175
+N +PSLD EL G G R+ Q
Sbjct: 146 LNP--APSLDTAVNEL---------------------------QSGDFSGSSNRRKQ--- 173
Query: 176 CKEYRHIIVNCAKKFCNYCKKPGHIIKECPTRPQNCQASQAVVA 219
KKFCNYCK+PGH I+ C R S AVVA
Sbjct: 174 ----------TNKKFCNYCKRPGHTIETCYRR----NKSTAVVA 203
>gi|147781957|emb|CAN72168.1| hypothetical protein VITISV_004170 [Vitis vinifera]
Length = 1415
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 92/209 (44%), Gaps = 38/209 (18%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
M+W++ S++ + AK+ + + +NT++ F +E + + QG+ S+
Sbjct: 93 MSWLINSMNNDI---------AKETYS------SSENTSELFQVESALHDFRQGEQSVTQ 137
Query: 61 YLSGIQNLWAKYVDMIYVQVP--IESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNR 118
Y + + W + +D+ + A + + EQ + +F + L E+ R +M
Sbjct: 138 YYNTLTRYWQQ-LDLFETHSWKCSDDAATYKKIVEQKRLFKFFLGLNREFDDVRGRIMGI 196
Query: 119 DLSPSLDVCFKELLREEQRLATQTIL---QQNKMHDNAIAYAAAHGKSKGRDMRQVQCFS 175
PSL F E+ REE R + I+ +Q +A A+AA S G D ++
Sbjct: 197 KPLPSLREAFSEVRREESR--KKVIMGSKEQPAPTLDASAFAARSFNSSGGDRQKRD--- 251
Query: 176 CKEYRHIIVNCAKKFCNYCKKPGHIIKEC 204
+ +C+YCKKPGH + C
Sbjct: 252 ------------RPWCDYCKKPGHYKEAC 268
>gi|147768451|emb|CAN78330.1| hypothetical protein VITISV_034973 [Vitis vinifera]
Length = 1049
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 68/140 (48%), Gaps = 4/140 (2%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVY-NQDNTAKCFHLEYEIARYSQGDLSIQ 59
M+W++ S++ + N + TAKD+W+ K+ Y + +NT++ F +E + + QG+ S+
Sbjct: 93 MSWLINSMNNDIGENFLLFGTAKDIWDAAKETYSSSENTSELFQVESALHDFRQGEQSVT 152
Query: 60 NYLSGIQNLWAKYVDMIYVQVP--IESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMN 117
Y + + W + +D+ + + + EQ + +F + L E +M
Sbjct: 153 QYYNTLTRYWQQ-LDLFETHSWKCSDDATTYRQIVEQKRLFKFFLGLNRELDDVSGRIMG 211
Query: 118 RDLSPSLDVCFKELLREEQR 137
PSL F E+ REE R
Sbjct: 212 IKPLPSLREAFSEVRREESR 231
>gi|124359649|gb|ABD32334.2| Polynucleotidyl transferase, Ribonuclease H fold [Medicago
truncatula]
Length = 772
Score = 58.9 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 45/218 (20%), Positives = 95/218 (43%), Gaps = 31/218 (14%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
++WI+ SV + + ++ A D+W L++ +++ + + L I QGD S+ +
Sbjct: 86 LSWIINSVSPQIAQTIVFHEYAIDVWIELQERFSKVDRIRVASLRSSINNLKQGDKSVLD 145
Query: 61 YLSGIQNLWAKY-----VDMIYVQVPI--ESLADVQGVHEQSKRDQFLMKLRPEYKAARS 113
Y + I++LW + + M P ES+ + + + QFL L + ++
Sbjct: 146 YFTSIKSLWEELNSHRPMPMCTCPYPCRCESMRAARDFRMEDQVIQFLTGLNDSFSVVKT 205
Query: 114 NLMNRDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAA-------HGKSKGR 166
++ D PS++ + +++EE + T L N+ D++I A+ GKS G
Sbjct: 206 QVLLIDPLPSINKVYSMVIQEESNIIPPTSLASNE--DSSILVNASDARKPFLRGKSSGT 263
Query: 167 DMRQVQCFSCKEYRHIIVNCAKKFCNYCKKPGHIIKEC 204
+ ++C +C++ H ++ C
Sbjct: 264 SQSKNN---------------SRYCTFCRRNNHTVEYC 286
>gi|147816509|emb|CAN75071.1| hypothetical protein VITISV_011695 [Vitis vinifera]
Length = 264
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 71/139 (51%), Gaps = 6/139 (4%)
Query: 3 WIMGSVDQSLVLNLKPYKTAKDMWEYLKKVY-NQDNTAKCFHLEYEIARYSQGDLSIQNY 61
W++ S+D SLV+N Y TAK +W+ Y + +T++ + L +++ Q SI+ Y
Sbjct: 58 WLINSMDHSLVMNFIRYPTAKQVWDSAATTYFDGTDTSQVYELRRRVSQMKQVGGSIEKY 117
Query: 62 LSGIQNLWAKYVDMIYVQVPIESLADVQGVH---EQSKRDQFLMKLRPEYKAARSNLMNR 118
+ +Q LW + +D + + P+ D+Q H ++ + FL L RS+++
Sbjct: 118 YNNLQGLWPE-IDFLRLN-PMSCAIDIQNYHSLLQEERVYTFLDGLDDRLDHVRSDVLCL 175
Query: 119 DLSPSLDVCFKELLREEQR 137
PS++ + + RE+ R
Sbjct: 176 KPFPSIEQAYAHIRREDLR 194
>gi|147780721|emb|CAN60317.1| hypothetical protein VITISV_002851 [Vitis vinifera]
Length = 975
Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 50/206 (24%), Positives = 87/206 (42%), Gaps = 38/206 (18%)
Query: 7 SVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLSGIQ 66
SVD + +L+ YKT W K +Y D + + + Y+I Q D+ + Y+ I
Sbjct: 185 SVDPKIFHHLRAYKTCFKFWTQAKGLYTND-IQRFYKVVYDIVHVRQQDMDLSTYIGRIA 243
Query: 67 NLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKL-----RPEYKAARSNLMNRDLS 121
L +++ ++ P + A+ Q Q + ++F M L RP+ ++ + ++
Sbjct: 244 FLKEEFLTLM----PFTNGAEAQ----QIQTNKFFMVLTLIGFRPKLESVQDQILASPSV 295
Query: 122 PSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAH---GKSKGRDMRQVQCFSCKE 178
PSLD F LLR L++ L + D+++ + + G+S RD Q
Sbjct: 296 PSLDDVFARLLR----LSSTQTLSTDGPSDSSVLASQTNSRGGRSGNRDRGQ-------- 343
Query: 179 YRHIIVNCAKKFCNYCKKPGHIIKEC 204
+ C YC K GH C
Sbjct: 344 ---------RPQCTYCNKLGHTRDRC 360
>gi|27573360|gb|AAO20078.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1299
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 90/186 (48%), Gaps = 13/186 (6%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYN-QDNTAKCFHLEYEIARYSQGDLSIQ 59
+ W++ S+ ++ ++ +A +MW+ L +Y+ + N + +I+ QG+ S+
Sbjct: 103 VAWLLTSLIPAIATTVETISSASEMWKTLTNLYSGEGNVMLMVEAQEKISVLRQGERSVA 162
Query: 60 NYLSGIQNLWAK--YVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMN 117
Y++ +++LW+ + D + ++ P + +A ++ E+ + +FL L E++ R + +
Sbjct: 163 EYVAELKHLWSDLDHYDPLGLEHP-DCIAKMRKWIERRRVIEFLKGLNSEFEGRRDAMFH 221
Query: 118 RDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCK 177
+ PSLD + +EE + + +L + Y A K +CF+C
Sbjct: 222 QTTLPSLDEAIAAMAQEELK---KKVLPSATPSSPSPTYVVAQSK------ETRECFNCG 272
Query: 178 EYRHII 183
E H+I
Sbjct: 273 EMGHLI 278
>gi|147854017|emb|CAN81288.1| hypothetical protein VITISV_036901 [Vitis vinifera]
Length = 520
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 84/203 (41%), Gaps = 32/203 (15%)
Query: 7 SVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLSGIQ 66
SVD ++L+L+ YKT W K +Y D + + + I SQ DL + Y+ I
Sbjct: 62 SVDPRILLHLQAYKTCFKFWTQAKGLYTND-IQRLYKVASAIVHLSQQDLDLSTYIGQIA 120
Query: 67 NLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLM-----KLRPEYKAARSNLMNRDLS 121
+L +++ ++ + + + +Q++ D+F M LRP+ + R ++
Sbjct: 121 SLKEQFLTVMPLTPDVGA--------QQTQLDKFFMVLTLIGLRPDLEPIRDQILGSSSV 172
Query: 122 PSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRH 181
PSLD F LLR +TQT L + D+++ + Q S
Sbjct: 173 PSLDDVFARLLRIS---STQT-LPSDSASDSSVLVS--------------QTTSRGGRSG 214
Query: 182 IIVNCAKKFCNYCKKPGHIIKEC 204
+ C YC K GH C
Sbjct: 215 TRGRGQRPHCTYCNKLGHTRDRC 237
>gi|224117584|ref|XP_002317615.1| predicted protein [Populus trichocarpa]
gi|222860680|gb|EEE98227.1| predicted protein [Populus trichocarpa]
Length = 278
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 70/139 (50%), Gaps = 5/139 (3%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
++WI +V + L A+ +W L + Q N + F L ++A Q S+ +
Sbjct: 100 VSWIQNAVSTDIKHTLVFVDDAQMVWTELNDRFTQQNGHRIFQLRRDLATLRQDKDSVSS 159
Query: 61 YLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRD---QFLMKLRPEYKAARSNLMN 117
Y ++ LW + + +Y +P+ + ++ ++E+ +RD QFLM L +Y AR +M
Sbjct: 160 YFGNLKTLWDEMI--VYNPMPLCTCGQLKVLNERYQRDYVIQFLMGLNDQYTNARDQIML 217
Query: 118 RDLSPSLDVCFKELLREEQ 136
+ PS++ F + ++EQ
Sbjct: 218 IEPLPSINKVFSLIQQQEQ 236
>gi|449472385|ref|XP_004153578.1| PREDICTED: uncharacterized protein LOC101215164, partial [Cucumis
sativus]
Length = 403
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 90/201 (44%), Gaps = 8/201 (3%)
Query: 2 TWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNY 61
+WI+ S+ + + NL K++W+ LK+ Y Q N + L ++ +QG LS++ Y
Sbjct: 98 SWIINSISKEIAANLVYNGNVKEIWDELKERYKQSNGPHIYQLRKDLVTTTQGSLSVEIY 157
Query: 62 LSGIQNLWAKYVDMIYV-QVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRDL 120
+ I +W + V+ + + E + FLM L Y R+ ++ D
Sbjct: 158 YAKITTIWQELVEYRPMDECTCEGSKKMIDFLNAEFVMIFLMGLNESYSQIRAQILLIDP 217
Query: 121 SPSLDVCFKELLREEQR--LATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKE 178
P ++ F +++EE++ + + ++ + N+ + KSK +D R + C +C
Sbjct: 218 LPPINRVFSLIIQEERQRSIGSSPSIESITLMANS-ERRFSSDKSKKKDTRPI-CSNCGY 275
Query: 179 YRHIIVNCAKKFCNYCKKPGH 199
H C K + PGH
Sbjct: 276 KGHTADKCYKL---HGYPPGH 293
>gi|147804904|emb|CAN62614.1| hypothetical protein VITISV_028123 [Vitis vinifera]
Length = 1102
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 84/203 (41%), Gaps = 32/203 (15%)
Query: 7 SVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLSGIQ 66
SVD ++L+L+ YKT W K +Y D + + + I SQ DL + Y+ I
Sbjct: 34 SVDPRILLHLQAYKTCFKFWTQAKGLYTND-IQRLYKVASAIVHLSQQDLDLSTYIGQIA 92
Query: 67 NLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLM-----KLRPEYKAARSNLMNRDLS 121
+L +++ ++ + DV +Q++ D+F M LRP+ + R ++
Sbjct: 93 SLKEQFLTVMPLT------PDVGA--QQTQLDKFFMVLTLIGLRPDLEPIRDQILGSSSV 144
Query: 122 PSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRH 181
PSLD F LLR +TQT L + D+++ + Q S
Sbjct: 145 PSLDDVFARLLRIS---STQT-LPSDSASDSSVLVS--------------QTTSRGGRSG 186
Query: 182 IIVNCAKKFCNYCKKPGHIIKEC 204
+ C YC K GH C
Sbjct: 187 TRGRGQRPHCTYCNKLGHTRDRC 209
>gi|449447317|ref|XP_004141415.1| PREDICTED: uncharacterized protein LOC101212632 [Cucumis sativus]
gi|449449869|ref|XP_004142687.1| PREDICTED: uncharacterized protein LOC101213831 [Cucumis sativus]
Length = 440
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 90/201 (44%), Gaps = 8/201 (3%)
Query: 2 TWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNY 61
+WI+ S+ + + +L K+MW+ LK+ Y Q N + L ++ +QG LS++ Y
Sbjct: 39 SWIINSISKEIAASLVYNGNVKEMWDELKERYKQSNGPHIYQLRKDLVTTTQGSLSVEIY 98
Query: 62 LSGIQNLWAKYVDMIYV-QVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRDL 120
+ I +W + V+ + + E + FLM L Y R+ ++ D
Sbjct: 99 YAKITTIWQELVEYRPMDECTCEGSKKMIDFLNAEFVMTFLMGLNESYSQIRAQILLIDP 158
Query: 121 SPSLDVCFKELLREEQR--LATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKE 178
P ++ F +++EE++ + + ++ + N+ + KSK +D R + C +C
Sbjct: 159 LPPINRVFSLIIQEERQRSIGSSPSIESIALMANS-ERRFSSDKSKKKDTRPI-CSNCGY 216
Query: 179 YRHIIVNCAKKFCNYCKKPGH 199
H C K + PGH
Sbjct: 217 KGHTADKCYKL---HGYPPGH 234
>gi|147767633|emb|CAN68990.1| hypothetical protein VITISV_015170 [Vitis vinifera]
Length = 1285
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/208 (21%), Positives = 90/208 (43%), Gaps = 20/208 (9%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVY-NQDNTAKCFHLEYEIARYSQGDLSIQ 59
M+W++ S+ + N Y TAK++W+ K+ Y N +NT + F +E + + QG+L++
Sbjct: 70 MSWLINSMTNDIGENFLLYGTAKEIWDAAKETYSNNENTLELFEVESVLHDFRQGELTVT 129
Query: 60 NYLSGIQNLWAKYVDMIYVQVPIESLAD---VQGVHEQSKRDQFLMKLRPEYKAARSNLM 116
Y + + W + +D+ + + L D + + E+ + +FL+ L R ++
Sbjct: 130 QYFNTLNRYWQQ-LDL-FEEHNWSCLGDGIKYKQIIERKRIYKFLIGLNKNLDEVRGRIL 187
Query: 117 NRDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSC 176
++ F E+ REE R Q + + + A A D + +
Sbjct: 188 GSKPLLNIREAFSEVRREESRKKIMMGSQDSVTNPESSALAVRGNPFNNNDHKPKK---- 243
Query: 177 KEYRHIIVNCAKKFCNYCKKPGHIIKEC 204
+ +C++C++ GH C
Sbjct: 244 ----------GRPWCDHCRRXGHTKDTC 261
>gi|147774435|emb|CAN59949.1| hypothetical protein VITISV_043423 [Vitis vinifera]
Length = 1059
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 71/146 (48%), Gaps = 12/146 (8%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
++WI+ S+ Q L ++ TA+++WE L+ ++Q N + F +E +IA +Q +++
Sbjct: 87 LSWILNSLSQDLADSVIFSTTAQEVWEDLRDHFSQSNAPRIFQIERDIACLTQDQMTVXA 146
Query: 61 YLSGIQNLW---AKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMN 117
Y + ++ LW Y D + H++ + QFLM L Y A R ++
Sbjct: 147 YYTRLKKLWDELGSYNDTV---------CSCGADHKRRRLMQFLMGLNESYNAIRGQILL 197
Query: 118 RDLSPSLDVCFKELLREEQRLATQTI 143
+ P + + +++E ++ + I
Sbjct: 198 MNPLPDVAKAYSSIVQEXKQRSLGAI 223
>gi|147855496|emb|CAN83856.1| hypothetical protein VITISV_014673 [Vitis vinifera]
Length = 352
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 85/203 (41%), Gaps = 32/203 (15%)
Query: 7 SVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLSGIQ 66
SVD ++L+L+ YKT W K +Y D + + + I SQ DL + Y+ I
Sbjct: 78 SVDPRILLHLQAYKTCFKFWTQAKGLYTND-IQRLYKVASXIVHLSQQDLDLSTYIGQIA 136
Query: 67 NLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLM-----KLRPEYKAARSNLMNRDLS 121
+L +++ ++ P+ DV +Q++ D+F M LRP+ + R ++
Sbjct: 137 SLKEQFLTVM----PLT--PDVGA--QQTQLDKFFMVLTLIGLRPDLEPIRDQILGSSSV 188
Query: 122 PSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRH 181
PSLD F LLR +TQT L + D+++ + Q S
Sbjct: 189 PSLDDVFARLLRIS---STQT-LTSDSASDSSVLVS--------------QTTSRGGRSG 230
Query: 182 IIVNCAKKFCNYCKKPGHIIKEC 204
+ C YC K GH C
Sbjct: 231 TRGRGQRPQCTYCNKLGHTRDRC 253
>gi|147785838|emb|CAN73074.1| hypothetical protein VITISV_032386 [Vitis vinifera]
Length = 1195
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 85/203 (41%), Gaps = 32/203 (15%)
Query: 7 SVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLSGIQ 66
SVD ++L+L+ YKT W K +Y D + + + I SQ DL + Y+ I
Sbjct: 62 SVDPRILLHLQAYKTCFKFWTQAKGLYTND-IQRLYKVASAIVHLSQQDLDLSTYIGQIA 120
Query: 67 NLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLM-----KLRPEYKAARSNLMNRDLS 121
+L +++ ++ P+ DV +Q++ D+F M LRP+ + R ++
Sbjct: 121 SLKEQFLTVM----PLT--PDVGA--QQTQLDKFFMVLTLIGLRPDLEPIRDQILGSSSV 172
Query: 122 PSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRH 181
PSLD F LLR +TQT L + D+++ + Q S
Sbjct: 173 PSLDDVFARLLRIS---STQT-LPSDSASDSSVLVS--------------QTTSRGGRSG 214
Query: 182 IIVNCAKKFCNYCKKPGHIIKEC 204
+ C YC K GH C
Sbjct: 215 TRGRGQRPHCTYCNKLGHTRDRC 237
>gi|147818978|emb|CAN67119.1| hypothetical protein VITISV_017483 [Vitis vinifera]
Length = 1970
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 85/203 (41%), Gaps = 32/203 (15%)
Query: 7 SVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLSGIQ 66
SVD ++L+L+ YKT W K +Y D + + + I SQ DL + Y+ I
Sbjct: 78 SVDPRILLHLQAYKTCFKFWTQAKGLYTND-IQRLYKVASAIVHLSQQDLDLSTYIGQIA 136
Query: 67 NLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLM-----KLRPEYKAARSNLMNRDLS 121
+L +++ ++ P+ DV +Q++ D+F M LRP+ + R ++
Sbjct: 137 SLKEQFLTVM----PLT--PDVGA--QQTQLDKFFMVLTLIGLRPDLEPIRDQILGSSSV 188
Query: 122 PSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRH 181
PSLD F LLR +TQT L + D+++ + Q S
Sbjct: 189 PSLDDVFARLLRIS---STQT-LPSDSASDSSVLVS--------------QTTSRGGRSG 230
Query: 182 IIVNCAKKFCNYCKKPGHIIKEC 204
+ C YC K GH C
Sbjct: 231 TRGRGQRPHCTYCNKLGHTRDRC 253
>gi|449526175|ref|XP_004170089.1| PREDICTED: uncharacterized protein LOC101223363, partial [Cucumis
sativus]
Length = 428
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 80/204 (39%), Gaps = 52/204 (25%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
++WI+ SV + + N+ A+ +W LK+ + + N + F L+ +A SQ SI
Sbjct: 136 ISWILNSVSKPISANILFSDLARTIWVELKERFQKKNAPRIFQLKRSLATLSQNQDSIDG 195
Query: 61 YLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRDL 120
G FLM L + A++ L+ D
Sbjct: 196 VSRG-----------------------------------FLMGLNENFFQAQAQLLLMDP 220
Query: 121 SPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYR 180
PS + LL+EEQ+ + ++ +A+A+A + SKG + S KE
Sbjct: 221 LPSTSRAYSLLLKEEQQRSIRSFASS----TSAMAFAVSSNSSKGNPTNK----SRKE-- 270
Query: 181 HIIVNCAKKFCNYCKKPGHIIKEC 204
+ C +C PGH + +C
Sbjct: 271 -------RPMCTHCNLPGHTVDKC 287
>gi|147856033|emb|CAN78616.1| hypothetical protein VITISV_003658 [Vitis vinifera]
Length = 2172
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 85/203 (41%), Gaps = 32/203 (15%)
Query: 7 SVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLSGIQ 66
SVD ++L+L+ YKT W K +Y D + + + I SQ DL + Y+ I
Sbjct: 792 SVDPRILLHLQAYKTCFKFWTQAKGLYTND-IQRLYKVASAIVHLSQQDLDLSTYIGQIA 850
Query: 67 NLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLM-----KLRPEYKAARSNLMNRDLS 121
+L +++ ++ P+ DV +Q++ D+F M LRP+ + R ++
Sbjct: 851 SLKEQFLTVM----PLT--PDVGA--QQTQLDKFFMVLTLIGLRPDLEPIRDQILGSSSV 902
Query: 122 PSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRH 181
PSLD F LLR +TQT L + D+++ + Q S
Sbjct: 903 PSLDDVFARLLRIS---STQT-LPSDSASDSSMLVS--------------QTTSRGGRSG 944
Query: 182 IIVNCAKKFCNYCKKPGHIIKEC 204
+ C YC K GH C
Sbjct: 945 TRGRGQRPHCTYCNKLGHTRDRC 967
>gi|147781743|emb|CAN61179.1| hypothetical protein VITISV_032292 [Vitis vinifera]
Length = 1237
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 84/203 (41%), Gaps = 32/203 (15%)
Query: 7 SVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLSGIQ 66
SVD ++L+L+ YKT W K +Y D + + + I SQ DL + Y+ I
Sbjct: 78 SVDPRILLHLQAYKTCFKFWTQAKGLYTND-IQRLYKVASAIVHLSQQDLDLSTYIGQIA 136
Query: 67 NLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLM-----KLRPEYKAARSNLMNRDLS 121
+L +++ ++ P+ DV +Q++ D+F M LRP+ + R ++
Sbjct: 137 SLKEQFLTVM----PLT--PDVGA--QQTQLDKFFMVLTXIGLRPDLEPIRDQILGSSSV 188
Query: 122 PSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRH 181
PSLD F LLR +TQT L + D+++ + Q S
Sbjct: 189 PSLDDVFARLLRIS---STQT-LPSDSASDSSVLVS--------------QTTSRGGRSG 230
Query: 182 IIVNCAKKFCNYCKKPGHIIKEC 204
C YC K GH C
Sbjct: 231 TRGRGQHPHCTYCNKLGHTRDRC 253
>gi|147860166|emb|CAN78715.1| hypothetical protein VITISV_030863 [Vitis vinifera]
Length = 1228
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 85/204 (41%), Gaps = 34/204 (16%)
Query: 7 SVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFH-LEYEIARYSQGDLSIQNYLSGI 65
SVD ++L+L+ YKT W K +Y D +C + + I SQ DL + Y+ I
Sbjct: 78 SVDPRILLHLRAYKTCFKFWTQAKGLYTND--IQCLYKVASAIVHISQQDLDLSTYIGQI 135
Query: 66 QNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLM-----KLRPEYKAARSNLMNRDL 120
+L +++ ++ + DV +Q++ D+F M LRP+ + R ++
Sbjct: 136 ASLKEEFLTVMPLT------PDVGA--QQTQLDKFFMVLTLIGLRPDLEPIRDQILGSSS 187
Query: 121 SPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYR 180
PSLD F LLR +TQT L + D+++ + Q S
Sbjct: 188 VPSLDDVFARLLRIS---STQT-LPSDSTSDSSVLVS--------------QTTSRGGRS 229
Query: 181 HIIVNCAKKFCNYCKKPGHIIKEC 204
+ C YC K GH C
Sbjct: 230 GTRGRGQRPHCTYCNKLGHTHDRC 253
>gi|147768776|emb|CAN60456.1| hypothetical protein VITISV_019554 [Vitis vinifera]
Length = 1552
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 89/205 (43%), Gaps = 32/205 (15%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQ-DNTAKCFHLEYEIARYSQGDLSIQ 59
MTW++ S+++ + N Y T +++WE + ++Y+ N ++ F L ++ DL +
Sbjct: 29 MTWLVNSMEEDISCNYMCYPTTQELWENVNQMYSDLGNQSQIFELTLKL------DLBLF 82
Query: 60 NYLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRD 119
N W D ++ + + E ++ +FL L E+ R ++ R
Sbjct: 83 NTYE-----WKSAEDRLHHKKXM----------EDNRIFKFLAGLNVEFDEVRGRIIGRQ 127
Query: 120 LSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEY 179
PS+ F E+ REE R + ++ K AI +A + G +V F CK
Sbjct: 128 PLPSIGEVFSEVRREESR---RNVMLGKKGPGVAIEGSAL--VTTGGGYNKVXAFQCKSD 182
Query: 180 RHIIVNCAKKFCNYCKKPGHIIKEC 204
+ +C++C KP H + C
Sbjct: 183 ER-----PRVWCDFCNKPRHTRENC 202
>gi|147816371|emb|CAN66199.1| hypothetical protein VITISV_036508 [Vitis vinifera]
Length = 1404
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 48/91 (52%), Gaps = 8/91 (8%)
Query: 114 NLMNRDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQC 173
+++ + +PSLD EL+REE RLAT + QNK++ AI + S +Q
Sbjct: 56 DMLTKSPAPSLDTVVNELVREEARLAT--LQAQNKLNVLAITPST----SLIEQPQQSGD 109
Query: 174 FSCKEYRHIIVNCAKKFCNYCKKPGHIIKEC 204
FS R KKFCNYCK PGH I+ C
Sbjct: 110 FSGSSNRR--KQTKKKFCNYCKSPGHTIETC 138
>gi|297791745|ref|XP_002863757.1| hypothetical protein ARALYDRAFT_917481 [Arabidopsis lyrata subsp.
lyrata]
gi|297309592|gb|EFH40016.1| hypothetical protein ARALYDRAFT_917481 [Arabidopsis lyrata subsp.
lyrata]
Length = 224
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 87/184 (47%), Gaps = 37/184 (20%)
Query: 21 TAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLSGIQNLWAKYVDMIYVQV 80
+A +W+ L +++N+ N A+ LE E+A QG+ SI + ++N+ ++ I
Sbjct: 56 SASSIWQALDRLFNKKNEARLQLLENELANAKQGESSISEFFIKVKNICSE----INSLN 111
Query: 81 PIESLADVQGVHEQSKRDQFLMK-LRPEYKAARSNLMNRDLSPSLDVCFKELLREEQRLA 139
P ES++D Q +F+++ LRPEY +++ PSL+ F+ LL ++ LA
Sbjct: 112 PEESISDAQ-------LKRFIIRGLRPEYTPFVTSVQGWATQPSLEE-FENLLASQESLA 163
Query: 140 TQTILQQNKMHDNAIAYAAA---------------------HGKSKGRDMRQVQCFSCKE 178
Q + K+HD++ + A G SKG D ++ +C+ C +
Sbjct: 164 VQ--MAGVKIHDDSGSAFVARRQQNFKAKSNDGGPRNNDGHEGSSKG-DKKKFKCYRCGK 220
Query: 179 YRHI 182
H
Sbjct: 221 LGHF 224
>gi|147809827|emb|CAN73765.1| hypothetical protein VITISV_035279 [Vitis vinifera]
Length = 2260
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 70/141 (49%), Gaps = 6/141 (4%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVY-NQDNTAKCFHLEYEIARYSQGDLSIQ 59
M+W++ S+ + N + TAK++W+ K+ + +++NT++ +E + QG+L++
Sbjct: 1178 MSWLVNSMTADIGENFLSFDTAKEIWDIAKETFSDKENTSEIIQIEGILHDLRQGNLTVT 1237
Query: 60 NYLSGIQNLWAKYVDMIYVQVPIESLAD---VQGVHEQSKRDQFLMKLRPEYKAARSNLM 116
Y + + LW + +DM V + D + + E + +FL+ L R +M
Sbjct: 1238 EYFNTLTRLW-RQLDMFEVHN-WNCVTDGFLYKKIVEGKRVFKFLLGLNKNLDEIRGRIM 1295
Query: 117 NRDLSPSLDVCFKELLREEQR 137
PSL F E+ REE R
Sbjct: 1296 GVKPLPSLREAFSEVRREESR 1316
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 81/190 (42%), Gaps = 18/190 (9%)
Query: 3 WIMGSVDQSLVLNLKPYKTAKDMWEYLKKVY-NQDNTAKCFHLEYEIARYSQGDLSIQNY 61
W++GS+D SL+ N + TAK +W+ + Y + + + + L +AR QG S++ Y
Sbjct: 87 WLIGSMDPSLIGNFIRFPTAKQVWDAIATTYFDGSDATQVYELRRRVARLRQGSGSLEKY 146
Query: 62 LSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRD---QFLMKLRPEYKAARSNLMNR 118
+ +Q LW + +D P++ AD+Q + + D FL L + S+++
Sbjct: 147 YNDLQGLW-REIDFRRPN-PMQCPADIQHFNNMLQEDXVYTFLDGLDDKLDNIXSDVLQL 204
Query: 119 DLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKE 178
P+ + + + RE N + N + + DM+ C C
Sbjct: 205 KPFPTXEQAYAHVRREA---------VXNSLSLNGKFNSVSKXNGPSNDMK---CSHCGN 252
Query: 179 YRHIIVNCAK 188
+H C K
Sbjct: 253 SKHTRDTCFK 262
>gi|147781338|emb|CAN62906.1| hypothetical protein VITISV_043610 [Vitis vinifera]
Length = 1498
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 69/142 (48%), Gaps = 9/142 (6%)
Query: 2 TWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNY 61
+WI+ +++ + ++ Y TA ++WE L + ++Q N + F ++ +IA Q LS+ Y
Sbjct: 89 SWIVNTLNPEIANSVIYYSTAHEVWEDLCERFSQSNAPRIFEIQRDIACLRQEQLSVSAY 148
Query: 62 LSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRDLS 121
+ ++ LW + + A +Q K QFLM L Y R ++ +
Sbjct: 149 YTKLKGLWDELASY--------NAAAHGAQQDQQKLMQFLMGLNESYSVIRGQILLMNPL 200
Query: 122 PSLDVCFKELLREE-QRLATQT 142
PS+ + + +EE QRL T T
Sbjct: 201 PSVRQAYSTISQEEKQRLLTST 222
>gi|147865854|emb|CAN81139.1| hypothetical protein VITISV_018760 [Vitis vinifera]
Length = 1403
Score = 57.0 bits (136), Expect = 6e-06, Method: Composition-based stats.
Identities = 52/203 (25%), Positives = 83/203 (40%), Gaps = 32/203 (15%)
Query: 7 SVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLSGIQ 66
SVD ++L+L+ YKT W K +Y D + + + I SQ DL + Y+ I
Sbjct: 196 SVDPRILLHLQAYKTCFKFWTQAKGLYTND-IQRLYKVASAIVHLSQQDLDLSTYIGQIA 254
Query: 67 NLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLM-----KLRPEYKAARSNLMNRDLS 121
+L +++ ++ P+ Q Q++ D+F M LRP+ + R ++
Sbjct: 255 SLKEQFLTVM----PLTPDVGAQ----QTQLDKFFMVLTLIGLRPDLEPIRDQILGSSSV 306
Query: 122 PSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRH 181
PSLD F LLR +TQT L + D+++ + Q S
Sbjct: 307 PSLDDVFARLLRIS---STQT-LPSDXASDSSVLVS--------------QTTSRGGRSG 348
Query: 182 IIVNCAKKFCNYCKKPGHIIKEC 204
+ C YC K GH C
Sbjct: 349 TRGRGQRPHCTYCNKLGHTRDRC 371
>gi|147819451|emb|CAN74286.1| hypothetical protein VITISV_036410 [Vitis vinifera]
Length = 1262
Score = 57.0 bits (136), Expect = 6e-06, Method: Composition-based stats.
Identities = 52/203 (25%), Positives = 83/203 (40%), Gaps = 32/203 (15%)
Query: 7 SVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLSGIQ 66
SVD ++L+L+ YKT W K +Y D + + + I SQ DL + Y+ I
Sbjct: 78 SVDPRILLHLQAYKTCFKFWTQAKGLYTND-IQRLYKVASAIVHLSQQDLDLSTYIGQIA 136
Query: 67 NLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLM-----KLRPEYKAARSNLMNRDLS 121
+L +++ ++ P+ Q Q++ D+F M LRP+ + R ++
Sbjct: 137 SLKEQFLTVM----PLTPDVGAQ----QTQLDKFFMVLTLIGLRPDLEPIRDQILGSSSV 188
Query: 122 PSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRH 181
PSLD F LLR +TQT L + D+++ + Q S
Sbjct: 189 PSLDDVFARLLRIS---STQT-LPSDSASDSSVLVS--------------QTTSRGGRSG 230
Query: 182 IIVNCAKKFCNYCKKPGHIIKEC 204
+ C YC K GH C
Sbjct: 231 TRGRGQRPHCTYCNKLGHTRDRC 253
>gi|449463807|ref|XP_004149623.1| PREDICTED: uncharacterized protein LOC101211618 [Cucumis sativus]
Length = 2085
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 92/202 (45%), Gaps = 10/202 (4%)
Query: 2 TWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNY 61
+WI+ S+ + + +L K++W+ LK+ Y Q N + L ++ +QG LS++ Y
Sbjct: 1383 SWIINSISKEIAASLVYNGNVKEIWDELKERYKQSNGPHIYQLRKDLVTTTQGSLSVEIY 1442
Query: 62 LSGIQNLWAKYVDMIYV-QVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRDL 120
+ I +W + V+ + + E + FLM L Y R+ ++ D
Sbjct: 1443 YAKITTIWQELVEYRPMDECTCEGSKKMIDFLNAEFVMIFLMGLNESYSQIRAQILLIDP 1502
Query: 121 SPSLDVCFKELLREEQRL---ATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCK 177
P ++ F +++EE++ ++ +I M ++ +++ KSK +D R + C +C
Sbjct: 1503 LPPINRVFSLIIQEERQRSIGSSPSIESITLMANSERRFSS--DKSKKKDTRPI-CSNCG 1559
Query: 178 EYRHIIVNCAKKFCNYCKKPGH 199
H C K + PGH
Sbjct: 1560 YKGHTADKCYKL---HGYPPGH 1578
>gi|4539372|emb|CAB40066.1| putative protein [Arabidopsis thaliana]
gi|7267796|emb|CAB81199.1| putative protein [Arabidopsis thaliana]
Length = 294
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/166 (19%), Positives = 83/166 (50%), Gaps = 10/166 (6%)
Query: 2 TWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNY 61
TW+M SV + + +L TA+ +W+ + + QD+ + + +E +++ QG + I Y
Sbjct: 104 TWLMNSVSKKIGQSLLFIPTAEGIWKNMLSRFKQDDAPRVYDIEQRLSKIEQGSMDISAY 163
Query: 62 LSGIQNLWAKYVDMIYVQVPI--------ESLADVQGVHEQSKRDQFLMKLRPEYKAARS 113
+ +Q LW ++ + YV +P+ ++ + + ++S +FLM L Y+ R
Sbjct: 164 YTELQTLWEEHKN--YVDLPVCTCGRCECDAAVKWERLQQRSHVTKFLMGLNESYEQTRR 221
Query: 114 NLMNRDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAA 159
+++ +++ F + ++E++ A + + + + ++Y +
Sbjct: 222 HILMLKPIRTIEEAFNIVTQDERQKAIRPTPKVDNVAFQTVSYNSG 267
>gi|9989049|gb|AAG10812.1|AC018460_6 Putative retroelement polyprotein [Arabidopsis thaliana]
Length = 1404
Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 86/191 (45%), Gaps = 13/191 (6%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVY-NQDNTAKCFHLEYEIARYSQGDLSIQ 59
+ + S++ S++ +TAK++W+ LK VY N+ N + F ++ I SQ DL
Sbjct: 71 LALLQNSLETSILEGYSYCETAKELWDTLKNVYGNESNLTRVFEVKKAINELSQEDLEFT 130
Query: 60 NYLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQ---FLMKLRPEYKAARSNLM 116
+ ++LW++ + D + +HE+ ++D+ L+ L P Y +L+
Sbjct: 131 KHFGKFRSLWSELKSL------RPGTLDPKILHERREQDKVFGLLLTLNPGYNDLIKHLL 184
Query: 117 NRDLSPSLD-VCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFS 175
+ PSLD VC K +++EQ + + N A G K D + + C
Sbjct: 185 RSEKLPSLDEVCSK--IQKEQGSTGLFGGKSELITANKGEVVANKGVYKNEDRKLLTCDH 242
Query: 176 CKEYRHIIVNC 186
CK+ H C
Sbjct: 243 CKKKGHTKDKC 253
>gi|147780148|emb|CAN60057.1| hypothetical protein VITISV_039053 [Vitis vinifera]
Length = 384
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 87/203 (42%), Gaps = 32/203 (15%)
Query: 7 SVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLSGIQ 66
SVD ++ +L+PYKT W K +Y D + + + I Q D+ + Y+ I
Sbjct: 78 SVDPKILHHLRPYKTCFKFWNQAKGLYTND-IQRLYKVASSIVNVRQQDMDLSTYIGQIA 136
Query: 67 NLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLM-----KLRPEYKAARSNLMNRDLS 121
+L +++ ++ P+ + Q + + D+F M LRP+ + R ++
Sbjct: 137 SLKEEFLTVM----PLTTDVGDQRI----QIDKFFMILTLIGLRPDLETVRDQILGSSSV 188
Query: 122 PSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRH 181
SLD F LLR +TQT L + D+++ + + + +GR Q +
Sbjct: 189 SSLDDVFARLLRIS---STQT-LSSDNTSDSSMLVSQTNSR-EGRSGNQGRG-------- 235
Query: 182 IIVNCAKKFCNYCKKPGHIIKEC 204
+ +C YC K GH C
Sbjct: 236 -----QRPYCTYCNKLGHTCDRC 253
>gi|9758329|dbj|BAB08885.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
Length = 370
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 96/208 (46%), Gaps = 13/208 (6%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
+ WI S++ + + A +W+ L++ ++ N + ++ ++A Q ++ +
Sbjct: 97 VGWIRVSIEPKVKSTVTFISDAHLLWDELRQRFSVTNNVRVHQIKAQLASCRQEGQTVID 156
Query: 61 YLSGIQNLWAKYVDMIYVQV-PIES-LADVQGVHEQSKRDQFLMKL-RPEYKAARSNLMN 117
Y + NLW + + V P S L + + K QF++ L + +NL+N
Sbjct: 157 YYGRLCNLWDELKNYQASAVCPHGSVLTAIVKERDDEKLHQFVLGLDSARFSGLCTNLIN 216
Query: 118 RDLSPSLDVCFKELLREEQRL-ATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSC 176
D PSL V + +++REEQR+ A++T Q+ ++ + + A H +S + +
Sbjct: 217 MDPLPSLGVAYSQVIREEQRIHASRTQEQRQEV----VGFVARHEQSSA-----MSSPAQ 267
Query: 177 KEYRHIIVNCAKKFCNYCKKPGHIIKEC 204
IV C++C + GH K+C
Sbjct: 268 SSIESSIVKSRPVLCSHCGRTGHEKKDC 295
>gi|147818045|emb|CAN76032.1| hypothetical protein VITISV_040150 [Vitis vinifera]
Length = 1152
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 84/203 (41%), Gaps = 32/203 (15%)
Query: 7 SVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLSGIQ 66
SVD ++L+L+ YKT W K +Y D + + + I SQ DL + Y+ I
Sbjct: 78 SVDPRILLHLQAYKTCFKFWTQAKGLYTND-IQRLYKVASAIVHLSQQDLDLSTYIGQIA 136
Query: 67 NLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLM-----KLRPEYKAARSNLMNRDLS 121
+L +++ ++ P+ DV +Q D+F M LRP+ ++ R ++
Sbjct: 137 SLKEEFLTVM----PLT--PDVGA--QQIXLDKFFMVLTLIGLRPDLESIRDQILGSSSV 188
Query: 122 PSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRH 181
PSLD F LLR +TQT L + D+++ + Q S
Sbjct: 189 PSLDDVFARLLRIS---STQT-LPSDSASDSSVLVS--------------QTTSRGGRSG 230
Query: 182 IIVNCAKKFCNYCKKPGHIIKEC 204
+ C YC K GH C
Sbjct: 231 TRGRGQRPHCTYCNKLGHTRDRC 253
>gi|147857967|emb|CAN80367.1| hypothetical protein VITISV_014719 [Vitis vinifera]
Length = 1573
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 51/225 (22%), Positives = 92/225 (40%), Gaps = 41/225 (18%)
Query: 7 SVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLSGIQ 66
SVD ++L+L+ YKT W K +Y D + + + I Q D+ + Y+ I
Sbjct: 318 SVDPKILLHLRAYKTCFKFWNQAKGLYTND-IQRLYKVASSIVNVRQQDVDLSTYIGQIV 376
Query: 67 NLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLR-----PEYKAARSNLMNRDLS 121
+L +++ ++ + + + ++++ D+F M L P+ + R ++
Sbjct: 377 SLKEEFLTVMPLTIDVGD--------QRTQIDKFFMVLTLIGLCPDLETVRDQILGSSSI 428
Query: 122 PSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRH 181
PSLD F LLR +TQT+ N D+++ + + + GR Q +
Sbjct: 429 PSLDDVFVRLLRIS---STQTLPSDN-TSDSSMLVSQTNSRG-GRSGNQGR--------- 474
Query: 182 IIVNCAKKFCNYCKKPGHIIKEC---------PTRPQNCQASQAV 217
+ C YC K GH C T P + SQ +
Sbjct: 475 ----GQRPHCTYCNKLGHTRDRCYQLHGRPSHTTHPPSSATSQGI 515
>gi|3513747|gb|AAC33963.1| contains similarity to reverse transcriptases (Pfam; rvt.hmm,
score: 11.19) [Arabidopsis thaliana]
Length = 1633
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 75/146 (51%), Gaps = 10/146 (6%)
Query: 2 TWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNY 61
TW+M SV + + +L TA+ +W+ + + QD+ + + +E +++ QG + I Y
Sbjct: 104 TWLMNSVSKKIGQSLLFIPTAEGIWKNMLSRFKQDDAPRVYDIEQRLSKIEQGSMDISAY 163
Query: 62 LSGIQNLWAKYVDMIYVQVPI--------ESLADVQGVHEQSKRDQFLMKLRPEYKAARS 113
+ +Q LW ++ + YV +P+ ++ + + ++S +FLM L Y+ R
Sbjct: 164 YTELQTLWEEHKN--YVDLPVCTCGRCECDAAVKWERLQQRSHVTKFLMGLNESYEQTRR 221
Query: 114 NLMNRDLSPSLDVCFKELLREEQRLA 139
+++ +++ F + ++E++ A
Sbjct: 222 HILMLKPIRTIEEAFNIVTQDERQKA 247
>gi|449500193|ref|XP_004161031.1| PREDICTED: uncharacterized protein LOC101230271 [Cucumis sativus]
Length = 457
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 90/201 (44%), Gaps = 8/201 (3%)
Query: 2 TWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNY 61
+WI+ S+ + + +L K++W+ LK+ Y Q N + L ++ +QG LS++ Y
Sbjct: 98 SWIINSISKEIAASLVYNGNVKEIWDELKERYKQSNGPHIYQLRKDLVTTTQGSLSVEIY 157
Query: 62 LSGIQNLWAKYVDMIYV-QVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRDL 120
+ I +W + V+ + + E + FLM L Y R+ ++ D
Sbjct: 158 YAKITTIWQELVEYRPMDECTCEGSKKMIDFLNAEFVMIFLMGLNESYSQIRAQILLIDP 217
Query: 121 SPSLDVCFKELLREEQR--LATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKE 178
P ++ F +++EE++ + + ++ + N+ + KSK +D R + C +C
Sbjct: 218 LPPINRVFSLIIQEERQRSIGSSPSIESITLMANS-ERRFSSDKSKKKDTRPI-CSNCGY 275
Query: 179 YRHIIVNCAKKFCNYCKKPGH 199
H C K + PGH
Sbjct: 276 KGHTADKCYKL---HGYPPGH 293
>gi|147838713|emb|CAN67317.1| hypothetical protein VITISV_019719 [Vitis vinifera]
Length = 1240
Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 52/203 (25%), Positives = 83/203 (40%), Gaps = 32/203 (15%)
Query: 7 SVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLSGIQ 66
SVD ++L+L+ YKT W K +Y D + + + I SQ DL + Y+ I
Sbjct: 93 SVDPRILLHLQAYKTCFKFWTQAKGLYTND-IQRLYKVASAIVHLSQQDLDLSTYIGQIA 151
Query: 67 NLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLM-----KLRPEYKAARSNLMNRDLS 121
+L +++ ++ P+ Q Q++ D+F M LRP+ + R ++
Sbjct: 152 SLKEQFLTVM----PLTPDVGAQ----QTQLDKFFMVLTLIGLRPDLEPIRDQILGSSSV 203
Query: 122 PSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRH 181
PSLD F L R L+TQT L + D+++ + Q S
Sbjct: 204 PSLDDVFARLPR---LLSTQT-LPSDSASDSSVLVS--------------QTTSRGGRSG 245
Query: 182 IIVNCAKKFCNYCKKPGHIIKEC 204
+ C YC K GH C
Sbjct: 246 TRGRGQRPHCTYCNKLGHTRDRC 268
>gi|147843218|emb|CAN80547.1| hypothetical protein VITISV_010898 [Vitis vinifera]
Length = 1181
Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 41/142 (28%), Positives = 67/142 (47%), Gaps = 17/142 (11%)
Query: 7 SVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLSGIQ 66
SVD ++L+L+ YKT W K +Y D + + + I SQ DL + Y+ I
Sbjct: 38 SVDPRILLHLQAYKTCFKFWTQAKGLYTND-IQRLYKVASAIVHLSQQDLDLSTYIGQIA 96
Query: 67 NLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLM-----KLRPEYKAARSNLMNRDLS 121
+L +++ ++ P+ Q Q++ D+F M LRP+ + R ++
Sbjct: 97 SLKEQFLTVM----PLTPDVGAQ----QTQLDKFFMVLTLIGLRPDLEPIRDQILGSSSV 148
Query: 122 PSLDVCFKELLREEQRLATQTI 143
PSLD F LLR +TQT+
Sbjct: 149 PSLDDVFVRLLRIS---STQTV 167
>gi|147844168|emb|CAN80566.1| hypothetical protein VITISV_029672 [Vitis vinifera]
Length = 1636
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 93/208 (44%), Gaps = 21/208 (10%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVY-NQDNTAKCFHLEYEIARYSQGDLSIQ 59
M+W++ S+ + N + TAK++W+ K+ + +++NT++ +E + QG+L++
Sbjct: 94 MSWLVNSMTADIGENFLSFDTAKEIWDTAKETFSDKENTSEIIQIEGILHDLRQGNLTVT 153
Query: 60 NYLSGIQNLWAKYVDMIYVQVPIESLAD---VQGVHEQSKRDQFLMKLRPEYKAARSNLM 116
Y + + LW + +D + + D + + E + +FL+ L R +M
Sbjct: 154 EYFNTLTRLW-RQIDTFEIH-NWNCVTDGFLYKKIVEGKRVFKFLLGLNKNLDEIRGRIM 211
Query: 117 NRDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSC 176
PSL E+ REE R + ++ + N +A + D RQ
Sbjct: 212 GVKPLPSLREACSEVRREEIR---KNLMMGSHQQLNMAESSALKTQFAPFDNRQ----KI 264
Query: 177 KEYRHIIVNCAKKFCNYCKKPGHIIKEC 204
KE R +C++C+K GH + C
Sbjct: 265 KEGR--------PWCDHCRKSGHSRETC 284
>gi|4263646|gb|AAD15368.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|17065314|gb|AAL32811.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|21387147|gb|AAM47977.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 411
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/230 (21%), Positives = 97/230 (42%), Gaps = 26/230 (11%)
Query: 2 TWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNY 61
+WI+ V++ + ++ Y+ A +MW L + +N + + LE + QG L++ Y
Sbjct: 135 SWILNVVNKEIYDSILYYEDAVEMWTDLFTRFRVNNLPRKYQLEQAVMTLKQGSLNLSTY 194
Query: 62 LSGIQNLWAKYVDMIYVQV---PIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNR 118
+ + LW + ++ V + + ++ E S+ QFLM L ++ S ++N
Sbjct: 195 FTKKKTLWEQLLNTKTRSVKKCDCDQVKELLEDAETSRVIQFLMGLNDDFNTIMSQILNM 254
Query: 119 DLSPSLDVCFKELLREE-QRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCK 177
P L+ + L ++E QRL H + + A +++G Q +
Sbjct: 255 KPRPGLNEIYNMLDQDESQRLVG---------HASKPTPSPAAFQTQGLLTEQNPILMAQ 305
Query: 178 EYRHIIVNCAKKFCNYCKKPGHIIKEC-------PTRPQNCQASQAVVAS 220
N K C +C + GH + +C P P+ Q S V ++
Sbjct: 306 G------NFKKPKCTHCNRIGHTVDKCYKVHGYPPGHPRANQQSSCVGST 349
>gi|147779017|emb|CAN62535.1| hypothetical protein VITISV_041880 [Vitis vinifera]
Length = 1314
Score = 55.5 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 32/203 (15%)
Query: 7 SVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLSGIQ 66
SVD ++L+L+ YKT W K +Y D + + + I SQ DL + Y+ I
Sbjct: 78 SVDPRILLHLQAYKTCFKFWTQAKGLYTND-IQRLYKVASAIVHLSQQDLDLSTYIGQIA 136
Query: 67 NLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLM-----KLRPEYKAARSNLMNRDLS 121
+L +++ ++ P+ Q Q++ D+F M LRP+ + R ++
Sbjct: 137 SLKEQFLTVM----PLTPDVGAQ----QTQLDKFFMVLTLIGLRPDLEPFRDQILGSSSV 188
Query: 122 PSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRH 181
PSLD F LLR +++ L + D+++ + Q S
Sbjct: 189 PSLDDVFARLLR----ISSTQTLPSDSASDSSVLVS--------------QTTSRGGRSG 230
Query: 182 IIVNCAKKFCNYCKKPGHIIKEC 204
+ C YC K GH C
Sbjct: 231 TRGRGQRPHCTYCNKLGHTRDXC 253
>gi|147768962|emb|CAN73624.1| hypothetical protein VITISV_042460 [Vitis vinifera]
Length = 1287
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/207 (21%), Positives = 90/207 (43%), Gaps = 19/207 (9%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVY-NQDNTAKCFHLEYEIARYSQGDLSIQ 59
M+W++ S+ + N + TAK++W+ K+ + +++NT++ +E + QG+L++
Sbjct: 94 MSWLVNSMTADIGENFLSFDTAKEIWDTAKETFSDKENTSEIIQIEGILHDLRQGNLTVT 153
Query: 60 NYLSGIQNLWAKYVDMIYVQVP--IESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMN 117
Y + + L + +D V + + + E + +FL+ L R +M
Sbjct: 154 EYFNTLTRL-XRQLDTFEVHNWNCVTBGFLYKKIVEGKRVFKFLLGLNKNLDEIRGRIMG 212
Query: 118 RDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCK 177
PSL F E+ REE R + ++ + N +A + D RQ
Sbjct: 213 VKPLPSLREAFSEVRREESR---KNLMMGSHQQLNMAESSALKTQFAPFDNRQK------ 263
Query: 178 EYRHIIVNCAKKFCNYCKKPGHIIKEC 204
+ + +C++C K GH + C
Sbjct: 264 ------IKGGRPWCDHCXKXGHSRETC 284
>gi|356561472|ref|XP_003549005.1| PREDICTED: uncharacterized protein LOC100789964 [Glycine max]
Length = 2412
Score = 55.5 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 33/145 (22%), Positives = 70/145 (48%), Gaps = 7/145 (4%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
++W+ S+ + + +L A +W+ L ++Q + + ++ E+AR QG L I +
Sbjct: 335 LSWLQRSISEEIAKSLLWCDRASLVWKSLANRFSQGDIFRVADIQEEVARLQQGTLDISS 394
Query: 61 YLSGIQNLWAKYVDMIYVQ-----VPIE--SLADVQGVHEQSKRDQFLMKLRPEYKAARS 113
Y + + W + + ++ +P + D++ EQ K +FL + +Y RS
Sbjct: 395 YFTKLMTPWEEIENFCPIRDCTCAIPCSCGAATDLRKFKEQDKVIKFLKGIGDQYSHVRS 454
Query: 114 NLMNRDLSPSLDVCFKELLREEQRL 138
+M P+LD F +L++E++
Sbjct: 455 QIMLMSPLPTLDNAFNLILQQERQF 479
>gi|12322504|gb|AAG51258.1|AC025782_3 Ty1/copia-element polyprotein [Arabidopsis thaliana]
Length = 1152
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 89/209 (42%), Gaps = 31/209 (14%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
+ W+ S+D + ++ A+ MWE L+ Y+ N ++ L+Y+I Q + N
Sbjct: 92 VGWLYASLDPQVQKSISVVDNARVMWESLRTRYSVGNASRVHQLKYDIVACRQDGQTAAN 151
Query: 61 YLSGIQNLWAKYVDMIYVQVPIESLAD--------VQGVHEQSKRD-----QFLMKL-RP 106
Y ++ +W D E L V + +RD QFLM L
Sbjct: 152 YFGKLKVMWDDLDDY-------EPLLTCCCNRPSCTHRVRQSQRRDHERIHQFLMGLDAA 204
Query: 107 EYKAARSNL---MNRDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKS 163
++ +R+N+ ++RD + SLD + E++ EE+ L TI + + +A+ +A G +
Sbjct: 205 KFGTSRTNILGRLSRDDNISLDSIYSEIIAEERHL---TITRSKEERVDAVGFAVQTGVN 261
Query: 164 KGRDMRQVQ----CFSCKEYRHIIVNCAK 188
+ +V C C H C K
Sbjct: 262 AIASVTRVNNMGPCTHCGRSNHSADTCFK 290
>gi|147790732|emb|CAN70260.1| hypothetical protein VITISV_002223 [Vitis vinifera]
Length = 956
Score = 55.5 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 52/203 (25%), Positives = 83/203 (40%), Gaps = 32/203 (15%)
Query: 7 SVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLSGIQ 66
SVD ++L+L+ YKT W K +Y D + + + I SQ DL + Y+ I
Sbjct: 104 SVDPKILLHLRAYKTCFKFWTQAKGLYMND-IQRLYKVASAIVHISQQDLDLFTYIGQIA 162
Query: 67 NLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLM-----KLRPEYKAARSNLMNRDLS 121
+L +++ ++ P+ Q Q++ D+F M LRP+ + R ++
Sbjct: 163 SLKEEFLTVM----PLTPDVGAQ----QTQLDKFFMVLILIGLRPDLEPVRDQILGSSSV 214
Query: 122 PSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRH 181
PSLD F LLR +TQT L + D+++ + Q S
Sbjct: 215 PSLDDVFARLLRIS---STQT-LSFDSTSDSSVLVS--------------QTSSRGGRSG 256
Query: 182 IIVNCAKKFCNYCKKPGHIIKEC 204
+ C YC K GH C
Sbjct: 257 TRGRGQRPHCTYCNKLGHTRDRC 279
>gi|147819777|emb|CAN76196.1| hypothetical protein VITISV_041073 [Vitis vinifera]
Length = 1505
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 94/211 (44%), Gaps = 28/211 (13%)
Query: 10 QSLVLNLKPY---KTAKDMWEYLKKVYNQ-DNTAKCFHLEYEIARYSQGDLSIQNYLSGI 65
+ LV KP+ TAKD+WE ++ +Y+ +N+++ F L+ ++ + QGD + Y + +
Sbjct: 89 RELVAIGKPHLFLPTAKDVWEAVRDMYSDLENSSQIFDLKSKLWQSRQGDREVTTYYNQM 148
Query: 66 QNLWAKYVDMIYV---QVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRDLSP 122
LW + +D+ Y P +S+ + E + FL L R ++ R P
Sbjct: 149 VTLWQE-LDLCYEDEWDCPNDSVRH-KKREENDRVYVFLAALNHNLDEVRGRILGRKPLP 206
Query: 123 SLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHI 182
S+ F E+ REE R + M + I +A SKG D+ +
Sbjct: 207 SIREVFSEVRREEARRKVM-LTDPEPMSNPEIESSAL--VSKGSDLDGDR---------- 253
Query: 183 IVNCAKKFCNYCKKPGHIIKEC---PTRPQN 210
K +C++CKKP H C +PQN
Sbjct: 254 ---RKKPWCDHCKKPWHTKGTCWKIHGKPQN 281
>gi|357476713|ref|XP_003608642.1| hypothetical protein MTR_4g098730 [Medicago truncatula]
gi|355509697|gb|AES90839.1| hypothetical protein MTR_4g098730 [Medicago truncatula]
Length = 75
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 35/50 (70%)
Query: 75 MIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRDLSPSL 124
++YV VP SLA VQ V+ S+RDQFLMKLRPE++ R+ L ++ SL
Sbjct: 21 LLYVDVPKASLAAVQEVYNTSRRDQFLMKLRPEFEVVRAKLKTVEMWESL 70
>gi|147807416|emb|CAN70756.1| hypothetical protein VITISV_014702 [Vitis vinifera]
Length = 1212
Score = 55.1 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 41/142 (28%), Positives = 67/142 (47%), Gaps = 17/142 (11%)
Query: 7 SVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLSGIQ 66
SVD ++L+L+ YKT W K +Y D + + + I SQ DL + Y+ I
Sbjct: 78 SVDPRILLHLQAYKTCFKFWTQAKGLYTND-IQRLYKVASAIVHLSQQDLDLSTYIGQIA 136
Query: 67 NLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLM-----KLRPEYKAARSNLMNRDLS 121
+L +++ ++ P+ Q Q + D+F M LRP+ ++ R ++
Sbjct: 137 SLKEEFLTVM----PLTPDVGAQ----QIQLDKFFMVLTLIGLRPDLESIRDQILGSSSV 188
Query: 122 PSLDVCFKELLREEQRLATQTI 143
PSLD F LLR +TQT+
Sbjct: 189 PSLDDVFARLLRIS---STQTL 207
>gi|77551557|gb|ABA94354.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 882
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/189 (19%), Positives = 94/189 (49%), Gaps = 13/189 (6%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQD-NTAKCFHLEYEIARYSQGDLSIQ 59
+ W++ S+ ++ ++ +A +MW+ L +Y+++ N + +I+ QG+ S+
Sbjct: 103 VAWLLTSLIPAIATTVETISSASEMWKTLTNLYSREGNVMLMVETQEKISVLRQGERSVA 162
Query: 60 NYLSGIQNLWA--KYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMN 117
Y++ +++LW+ + + + ++ P + +A ++ E+ + +FL L E++ R+ + +
Sbjct: 163 EYVAELKHLWSDLDHYNPLGLEHP-DCIAKMRKWIERRRVIEFLKGLNSEFEGRRNAMFH 221
Query: 118 RDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCK 177
+ P+LD + +E+ + + +L + Y A K +CF+C
Sbjct: 222 QTTLPTLDEAIAAMAQEKLK---KKVLPSATPSSPSPTYVVAQSKE------TRECFNCG 272
Query: 178 EYRHIIVNC 186
+ H+I +C
Sbjct: 273 KMGHLIRDC 281
>gi|147866085|emb|CAN84135.1| hypothetical protein VITISV_000113 [Vitis vinifera]
Length = 1323
Score = 55.1 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 49/203 (24%), Positives = 81/203 (39%), Gaps = 32/203 (15%)
Query: 7 SVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLSGIQ 66
SVD ++L+L+ YKT W K +Y D + + + I SQ DL + Y+ I
Sbjct: 78 SVDPRILLHLQAYKTCFKFWTQAKGLYTND-IQRLYKVASAIVHLSQQDLDLSTYIGQIA 136
Query: 67 NLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLM-----KLRPEYKAARSNLMNRDLS 121
+L +++ ++ P+ Q Q++ D+F M LRP+ + R ++
Sbjct: 137 SLKEQFLXVM----PLTPDVGAQ----QTQLDKFFMVLTLIGLRPDLEPIRDQILGSSSV 188
Query: 122 PSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRH 181
PSLD F LLR L++ L D+++ + + R
Sbjct: 189 PSLDDVFARLLR----LSSTQTLPSASASDSSVLVSHTTSRGGRSGTRGRG--------- 235
Query: 182 IIVNCAKKFCNYCKKPGHIIKEC 204
+ C YC K GH C
Sbjct: 236 -----QRPHCTYCNKLGHTRDRC 253
>gi|147853845|emb|CAN83808.1| hypothetical protein VITISV_026963 [Vitis vinifera]
Length = 971
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/237 (22%), Positives = 98/237 (41%), Gaps = 45/237 (18%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVY-NQDNTAKCFHLEYEIARYSQGDLSIQ 59
M+W++ S+ + N Y TAK++W+ ++ Y N DNT+ F ++ + Q +
Sbjct: 89 MSWLINSMTNDIGENFMYYGTAKEIWDATRETYSNIDNTSTIFEIKSILQDLRQEIQLLP 148
Query: 60 NYLSGIQNL-WAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNR 118
N L + L W + P + L + V E+ +FL+ L R +++
Sbjct: 149 NILISLHELVW---------KCPEDGLL-YKKVIEKEHIYKFLLGLNKNLDEVRGRVLSI 198
Query: 119 DLSPSLDVCFKELLREEQR----LATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCF 174
PS+ F ++ REE R L TQ + ++A+ A G + Q +
Sbjct: 199 KPLPSVREVFSKIRREESRQKVMLGTQN--SSKNLENSAL---VARGTQSNNNNHQTK-- 251
Query: 175 SCKEYRHIIVNCAKKFCNYCKKPGHIIKEC-----------PTRPQNCQASQAVVAS 220
+ +C++C+KPGH + C P+RPQ + + A+
Sbjct: 252 -----------KNRPWCDHCRKPGHTKETCWHLHGKPADWKPSRPQQNREGRGYTAT 297
>gi|147799759|emb|CAN75051.1| hypothetical protein VITISV_020117 [Vitis vinifera]
Length = 1625
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 72/146 (49%), Gaps = 9/146 (6%)
Query: 3 WIMGSVDQSLVLNLKPYKTAKDMWEYLKKVY-NQDNTAKCFHLEYEIARYSQGDLSIQNY 61
W++ S+D SL+ N + TAK +W+ Y + +T++ + L + R Q SI+ Y
Sbjct: 80 WLINSMDPSLIANFIXFPTAKQVWDSAAITYFDGTDTSQVYDLRRRVTRMKQAGGSIEKY 139
Query: 62 LSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQ---FLMKLRPEYKAARSNLMNR 118
+ +Q LW + +D P+E D+Q + + D+ FL L RS+++
Sbjct: 140 YNDLQGLW-REIDFRRPN-PMECAIDIQKYNSILQEDRVYTFLDGLDDRLDKTRSDVLQI 197
Query: 119 DLSPSLDVCFKELLREEQRLATQTIL 144
P+++ + + REE R QT++
Sbjct: 198 KPFPTVEQAYAFVRREEVR---QTVM 220
>gi|2462935|emb|CAA72989.1| unnamed protein product [Brassica oleracea var. acephala]
Length = 1131
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/205 (20%), Positives = 84/205 (40%), Gaps = 15/205 (7%)
Query: 2 TWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNY 61
+W++ SV + ++ A D+W L ++ N + F+L EI QG +S+ +Y
Sbjct: 83 SWLLNSVSPQIYRSILRLNDAADIWRDLHGRFHMTNLPRTFNLTQEIQDLKQGSMSLSDY 142
Query: 62 LSGIQNLWAKYVDMIYVQVPI--ESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRD 119
+ ++ LW + P + +Q +++K +FL L Y R ++ +
Sbjct: 143 YTTLKTLWDNLESVDEPDTPCVCGNAEKLQKKVDRAKIVKFLAGLNDSYAIIRRQIIMKK 202
Query: 120 LSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEY 179
+ PSL + L +++ + T + AA S+ + C Y
Sbjct: 203 VLPSLVEVYNILDQDDSQKGFSTAIT-----------PAAFNVSENVPPPMAEAGIC--Y 249
Query: 180 RHIIVNCAKKFCNYCKKPGHIIKEC 204
N + C++C + GHI + C
Sbjct: 250 VQTGPNKGRPICSFCNRVGHIAERC 274
>gi|147860024|emb|CAN83125.1| hypothetical protein VITISV_015109 [Vitis vinifera]
Length = 1355
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/208 (20%), Positives = 94/208 (45%), Gaps = 26/208 (12%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVY-NQDNTAKCFHLEYEIARYSQGDLSIQ 59
M+WI+ S+++++ +++ D+WE L+ +Y NQ+N+A+ F ++ E+ Q
Sbjct: 88 MSWILNSMERNIAEIFSYSESSLDLWEALRDMYGNQNNSARIFQIQQEVNALRQDGRPFV 147
Query: 60 NYLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRD 119
+ L ++LW++ +Y ++ + ++ E+ + Q L L E++ R +++
Sbjct: 148 SLLGNFKSLWSEL--EVYRPHTVDPVV-LKKRTEEDRVFQVLASLGSEFEDLRCHILMSP 204
Query: 120 LSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEY 179
PSL + REE R + ++++ + + AH +G+ ++
Sbjct: 205 ELPSLKSVCSTIQREEVR--RKVMIRETVTNSSDTRAYIAHKNYEGKSIK---------- 252
Query: 180 RHIIVNCAKKF---CNYCKKPGHIIKEC 204
K+ C +C PGH C
Sbjct: 253 -------GKRLDLKCEHCNAPGHTSDRC 273
>gi|147778587|emb|CAN75744.1| hypothetical protein VITISV_040125 [Vitis vinifera]
Length = 1257
Score = 55.1 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 48/203 (23%), Positives = 83/203 (40%), Gaps = 32/203 (15%)
Query: 7 SVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLSGIQ 66
SVD ++L+L+ YKT W K +Y D + + + I SQ DL + Y+ I
Sbjct: 78 SVDPRILLHLQAYKTCFKFWTQAKGLYTND-IQRLYKVASAIVHLSQQDLDLSTYIGQIV 136
Query: 67 NLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLM-----KLRPEYKAARSNLMNRDLS 121
+L +++ ++ + +E+ +Q++ D+F M LRP+ + R ++
Sbjct: 137 SLKEQFLTVMPLTPDVEA--------QQTQLDKFFMVLTLIGLRPDLEPIRDQILGSSSV 188
Query: 122 PSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRH 181
SLD F LLR L++ L + D+++ + Q S
Sbjct: 189 SSLDDVFARLLR----LSSTQTLPSDSASDSSVLVS--------------QTTSRGGRSG 230
Query: 182 IIVNCAKKFCNYCKKPGHIIKEC 204
+ C YC K GH C
Sbjct: 231 TRGRGQRPHCTYCNKLGHTRDRC 253
>gi|255579435|ref|XP_002530561.1| conserved hypothetical protein [Ricinus communis]
gi|223529899|gb|EEF31829.1| conserved hypothetical protein [Ricinus communis]
Length = 89
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/53 (56%), Positives = 33/53 (62%), Gaps = 7/53 (13%)
Query: 83 ESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRDLSPSLDVCFKELLREE 135
+SL D +HE SK D FLMKL+ SNLMNR P LDVCF ELL EE
Sbjct: 44 DSLPDGLAIHEISKCDHFLMKLQ-------SNLMNRHPPPILDVCFSELLHEE 89
>gi|147775813|emb|CAN75922.1| hypothetical protein VITISV_030752 [Vitis vinifera]
Length = 1214
Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats.
Identities = 48/203 (23%), Positives = 82/203 (40%), Gaps = 32/203 (15%)
Query: 7 SVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLSGIQ 66
SVD ++L+L+ YKT W K +Y D + + + I SQ DL + Y+ I
Sbjct: 62 SVDPRILLHLQAYKTCFKFWTQAKGLYTND-IQRLYKVASAIVHISQQDLDLSTYIGQIA 120
Query: 67 NLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLM-----KLRPEYKAARSNLMNRDLS 121
+L +++ ++ P+ Q Q++ D+F M LRP+ + R ++
Sbjct: 121 SLKEEFLTVM----PLTPDVGAQ----QTQLDKFFMVLTLIGLRPDLEPIRDQILGSSSV 172
Query: 122 PSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRH 181
PSL+ F LLR +++ L + D+++ + Q S
Sbjct: 173 PSLNDVFARLLR----ISSTQTLPSDSTSDSSVLVS--------------QTTSRGGRSG 214
Query: 182 IIVNCAKKFCNYCKKPGHIIKEC 204
+ C YC K GH C
Sbjct: 215 TRGRGQRPHCTYCNKLGHTRDRC 237
>gi|4678197|gb|AAD26943.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1454
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 84/205 (40%), Gaps = 14/205 (6%)
Query: 2 TWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNY 61
+W++ SV + ++ A D+W L +N N + ++L EI + QG LS+ Y
Sbjct: 130 SWLLNSVSPQIYRSILRMNDASDIWRDLNSRFNVTNLPRTYNLTQEIQDFRQGTLSLSEY 189
Query: 62 LSGIQNLWAKYVDMIYVQVPIE--SLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRD 119
+ ++ LW + + P +Q EQ+K +FL L Y R ++ +
Sbjct: 190 YTRLKTLWDQLDSTEALDEPCTCGKAMRLQQKAEQAKIVKFLAGLNESYAIVRRQIIAKK 249
Query: 120 LSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEY 179
PSL + L ++ QQ+ N +A AA S+ + C Y
Sbjct: 250 ALPSLGEVYHILDQDNS--------QQS--FSNVVAPPAAFQVSEITQSPSMDPTVC--Y 297
Query: 180 RHIIVNCAKKFCNYCKKPGHIIKEC 204
N + C++ + GHI + C
Sbjct: 298 VQNGPNKGRPICSFYNRVGHIAERC 322
>gi|147825392|emb|CAN62266.1| hypothetical protein VITISV_025647 [Vitis vinifera]
Length = 1254
Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats.
Identities = 40/142 (28%), Positives = 67/142 (47%), Gaps = 17/142 (11%)
Query: 7 SVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLSGIQ 66
SVD ++L+L+ YKT +W K +Y D + + + SQ DL + Y+ I
Sbjct: 62 SVDPKILLHLRAYKTCFKLWTQAKGLYTND-IQRLYKVASANVHISQQDLDLSTYIGQIA 120
Query: 67 NLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLM-----KLRPEYKAARSNLMNRDLS 121
+L +++ + +P+ Q Q++ D+F M LRP+ + R ++
Sbjct: 121 SLKEEFL----IVMPLTPDVGAQ----QTQLDKFFMVLTLXGLRPDLEPVRDQILGSSSV 172
Query: 122 PSLDVCFKELLREEQRLATQTI 143
PSLD F LLR +TQT+
Sbjct: 173 PSLDDVFARLLRIS---STQTL 191
>gi|147821763|emb|CAN74883.1| hypothetical protein VITISV_018571 [Vitis vinifera]
Length = 994
Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats.
Identities = 45/208 (21%), Positives = 89/208 (42%), Gaps = 35/208 (16%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVY-NQDNTAKCFHLEYEIARYSQGDLSIQ 59
M+W++ S+ + N Y T K++W+ K+ Y N +NT++ F + + + QG+L++
Sbjct: 356 MSWLINSMTNDIGENFLLYGTTKEIWDVAKETYSNNENTSELFEVGSVLHDFRQGELAVT 415
Query: 60 NYLSGIQNLWAKYVDMIYVQ---VPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLM 116
Y + + W + +D+ P + + Q + E+ + +FL+ L
Sbjct: 416 QYFNTLNRYWQQ-LDLFEEHNWSCPGDGIRYRQ-IIERKRIHKFLIGL------------ 461
Query: 117 NRDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSC 176
N++L + F E+ REE R Q + + A A S D + +
Sbjct: 462 NKNLD---EEAFSEVRREESRKKIMMGSQDFVTNSESSALAVRGNPSNNNDHKPKK---- 514
Query: 177 KEYRHIIVNCAKKFCNYCKKPGHIIKEC 204
+ +C++C++PGH C
Sbjct: 515 ----------GRPWCDHCRRPGHTKDTC 532
>gi|147792456|emb|CAN72440.1| hypothetical protein VITISV_039162 [Vitis vinifera]
Length = 1253
Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats.
Identities = 49/203 (24%), Positives = 80/203 (39%), Gaps = 32/203 (15%)
Query: 7 SVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLSGIQ 66
SVD ++L+L+ YK W K +Y D + + I SQ DL + Y+ I
Sbjct: 62 SVDPRILLHLQAYKXCFKFWTQAKGLYTND-IQXLYKVASAIVHLSQQDLDLSTYIGQIA 120
Query: 67 NLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLM-----KLRPEYKAARSNLMNRDLS 121
+L +++ ++ P+ Q Q++ D+F M LRP+ + R ++
Sbjct: 121 SLKEQFLTVM----PLTPDVGAQ----QTQLDKFFMVLTLIGLRPDLEPIRDQILGSSSV 172
Query: 122 PSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRH 181
PSLD F LLR L++ L + D+++ + Q S
Sbjct: 173 PSLDDVFARLLR----LSSTQTLPSDSASDSSVLVS--------------QTTSRGGRSG 214
Query: 182 IIVNCAKKFCNYCKKPGHIIKEC 204
+ C YC K GH C
Sbjct: 215 TRGRGQRPHCTYCNKLGHTRDRC 237
>gi|147766535|emb|CAN69688.1| hypothetical protein VITISV_026774 [Vitis vinifera]
Length = 1382
Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats.
Identities = 49/203 (24%), Positives = 80/203 (39%), Gaps = 32/203 (15%)
Query: 7 SVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLSGIQ 66
SVD ++L+L+ YKT W K +Y D + + + I SQ DL + Y+ I
Sbjct: 274 SVDPRILLHLQAYKTCFKFWTQAKGLYTND-IQRLYKVASAIVHLSQQDLDLSTYIGQIA 332
Query: 67 NLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLM-----KLRPEYKAARSNLMNRDLS 121
+L +++ ++ P+ Q Q + D+F M L P+ + R ++
Sbjct: 333 SLKEQFLTVM----PLTPDVGAQ----QMQLDKFFMVLTLIGLHPDLEPIRDQILGSSSV 384
Query: 122 PSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRH 181
PSLD F LLR L++ L + D+++ + Q S
Sbjct: 385 PSLDDVFARLLR----LSSTQTLPSDSASDSSVLVS--------------QTTSRGGRSG 426
Query: 182 IIVNCAKKFCNYCKKPGHIIKEC 204
+ C YC K GH C
Sbjct: 427 TRGRGQRPHCTYCNKLGHTRDRC 449
>gi|147860623|emb|CAN83575.1| hypothetical protein VITISV_025852 [Vitis vinifera]
Length = 1474
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 88/208 (42%), Gaps = 35/208 (16%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQ-DNTAKCFHLEYEIARYSQGDLSIQ 59
M+W++ S++ + N + TAKD+W+ K+ Y+ +NT + F +E + + QG+ S+
Sbjct: 220 MSWLINSMNNDIGENFLLFGTAKDIWDAAKETYSSFENTLELFQVESTLHDFRQGEQSVT 279
Query: 60 NYLSGIQNLWAKYVDMIYVQVP--IESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMN 117
Y + + W + +D+ + A + + EQ + +F + L E R +M
Sbjct: 280 QYYNTLTRYWQQ-LDLFETHSWKCSDDAATYRQIVEQKRLFKFFLGLNRELDDVRGRIMG 338
Query: 118 -RDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSC 176
+ L S F+E Q +A A AA S G D ++
Sbjct: 339 IKPLPKSQGGFFRE---------------QPAPTLDASALAARSFNSSGGDCQKRD---- 379
Query: 177 KEYRHIIVNCAKKFCNYCKKPGHIIKEC 204
+ +C+YCKK GH + C
Sbjct: 380 -----------RPWCDYCKKLGHYKEVC 396
>gi|224058609|ref|XP_002299564.1| predicted protein [Populus trichocarpa]
gi|222846822|gb|EEE84369.1| predicted protein [Populus trichocarpa]
Length = 291
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/209 (20%), Positives = 73/209 (34%), Gaps = 52/209 (24%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQG-DLSIQ 59
+TW + ++ + Y +AK++W+ L Y A + L + QG D S+
Sbjct: 72 ITWFRNTSVPAIHIQFADYDSAKEIWDLLANRYQTTGLAHYYQLWTTLHSLKQGSDQSVN 131
Query: 60 NYLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRD 119
++L+ +Q +W + S A++ H ++ + R +N D
Sbjct: 132 DFLAQVQPIWNQI-----------SQANISEDHLHLIQEIIFEETR----------LNLD 170
Query: 120 LSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEY 179
SP D+ Q+ QT C +C +
Sbjct: 171 KSPQFDIALVTTRSSHQKFGNQT------------------------------CKNCHQM 200
Query: 180 RHIIVNCAKKFCNYCKKPGHIIKECPTRP 208
H C YC GHI++ CPTRP
Sbjct: 201 GHAFATYPTVECRYCHAFGHILEHCPTRP 229
>gi|224095710|ref|XP_002334734.1| predicted protein [Populus trichocarpa]
gi|222874387|gb|EEF11518.1| predicted protein [Populus trichocarpa]
Length = 187
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 74/141 (52%), Gaps = 6/141 (4%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVY-NQDNTAKCFHLEYEIARYSQGDLSIQ 59
M+W++ S+ + N Y+T K +W+ ++ Y + +NT++ F ++ + QGDLS+
Sbjct: 42 MSWLINSITNKIGENFLLYETTKKIWDATRETYSSSENTSELFKIKAALRDLRQGDLSVT 101
Query: 60 NYLSGIQNLWAKYVDMIYVQV---PIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLM 116
Y + + ++++DM + P ++ + + E+ + +FL+ L R ++
Sbjct: 102 QYFNTLCR-HSQHLDMFEIHTWKCPKDTTL-YRRILEKKRTFKFLLGLNKYLDEVRRRII 159
Query: 117 NRDLSPSLDVCFKELLREEQR 137
++ P+L F E+ REE++
Sbjct: 160 GKNPLPNLREAFSEVRREERK 180
>gi|147774908|emb|CAN77210.1| hypothetical protein VITISV_000141 [Vitis vinifera]
Length = 1236
Score = 53.9 bits (128), Expect = 4e-05, Method: Composition-based stats.
Identities = 41/142 (28%), Positives = 66/142 (46%), Gaps = 17/142 (11%)
Query: 7 SVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLSGIQ 66
SVD ++L+L+ YKT W K +Y D + + + I SQ DL Y+ I
Sbjct: 60 SVDPRILLHLRAYKTCFKFWTQAKGLYTND-IQRLYKVASTIVHISQQDLDPSTYIGQIV 118
Query: 67 NLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLM-----KLRPEYKAARSNLMNRDLS 121
+L +++ ++ P+ Q Q++ D+F M LRP+ + R ++
Sbjct: 119 SLKEEFLTVM----PLTPDVGAQ----QTQLDKFFMVLTLIGLRPDLEPIRDQILGSSSV 170
Query: 122 PSLDVCFKELLREEQRLATQTI 143
PSLD F LLR +TQT+
Sbjct: 171 PSLDDVFARLLRIS---STQTL 189
>gi|147777505|emb|CAN60498.1| hypothetical protein VITISV_027869 [Vitis vinifera]
Length = 2077
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 67/142 (47%), Gaps = 17/142 (11%)
Query: 7 SVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLSGIQ 66
SVD ++ +L+ YKT W K +Y D + + + Y+I Q D+ + Y+ I
Sbjct: 273 SVDPKILHHLRAYKTCFKFWTQAKGLYTND-IQRFYKVVYDIVHVRQQDMDLSTYIGRIA 331
Query: 67 NLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLM-----KLRPEYKAARSNLMNRDLS 121
+L +++ ++ +E+ +Q + D+F M LRP+ + R ++
Sbjct: 332 SLKEEFLTLMPFTNGVEA--------QQIQTDKFFMVLTLIGLRPDLEYVRDQILASSSV 383
Query: 122 PSLDVCFKELLREEQRLATQTI 143
PSLD F LLR +TQT+
Sbjct: 384 PSLDDVFARLLRLS---STQTL 402
>gi|147838570|emb|CAN74310.1| hypothetical protein VITISV_037517 [Vitis vinifera]
Length = 1266
Score = 53.9 bits (128), Expect = 5e-05, Method: Composition-based stats.
Identities = 35/132 (26%), Positives = 63/132 (47%), Gaps = 14/132 (10%)
Query: 7 SVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLSGIQ 66
SVD ++L+L+ YKT W K +Y D + + + I SQ DL + Y+ I
Sbjct: 87 SVDPKILLHLRAYKTCFKFWTQAKGLYTND-IQRLYKVASAIVHISQQDLDLSTYIGQIA 145
Query: 67 NLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLM-----KLRPEYKAARSNLMNRDLS 121
+L +++ ++ + + + + +Q++ D+F M LR + + R ++
Sbjct: 146 SLKEEFLTVMPLTLDVGA--------QQTQLDKFFMVLTLIGLRLDLEPVRDQILGSSSV 197
Query: 122 PSLDVCFKELLR 133
PSLD F LLR
Sbjct: 198 PSLDDVFARLLR 209
>gi|353685490|gb|AER13167.1| putative retrovirus-like polyprotein [Phaseolus vulgaris]
Length = 1009
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/222 (20%), Positives = 101/222 (45%), Gaps = 21/222 (9%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
++W++ SV + ++ A D+W LK Y+ + ++ L+ +A QG+L++ +
Sbjct: 297 VSWLVHSVSIPIRQSIVWMDIALDIWNDLKSRYSSGDLSRISDLQLGVASLHQGELTVTD 356
Query: 61 YLSGIQNLWAKYVDM-----------IYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYK 109
Y + ++ +W + + V SL + + +Q+ QFL L +Y
Sbjct: 357 YFTKLRIIWDELENFRPNPVCICETKCSCFVAFTSLINQRKCEDQAM--QFLRGLNEQYL 414
Query: 110 AARSNLMNRDLSPSLDVCFKELLREEQRLATQ-TILQQNKMHDNAIA------YAAAHGK 162
+ +++ + P + F ++++E++L ++ N + N I+ + +G
Sbjct: 415 NIKFHVLLMEPIPPITKKFSLVVQQERQLDNNFSVSNINSANSNRISSSVICTFCGKNGH 474
Query: 163 SKGRDMRQVQCFSCKEYRHIIVNCAKKFCNYCKKPGHIIKEC 204
++ R+V F +E + N KK C +C + GH I+ C
Sbjct: 475 TENVCFRKVG-FPNQENKSFKNNGNKKMCTHCGRNGHTIETC 515
>gi|4388829|gb|AAD19784.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1501
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/219 (21%), Positives = 91/219 (41%), Gaps = 23/219 (10%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
+ WI S++ + + A +W+ LK+ ++ N + + +++ Q ++
Sbjct: 99 VGWIRTSIEPKVKATVTFISDAHLLWKDLKQRFSVGNKVRIHQIRAQLSSCRQDGQAVIE 158
Query: 61 YLSGIQNLWAKYVDMIYVQVPI--------ESLADVQGVHEQSKRDQFLMKL-RPEYKAA 111
Y + NLW +Y IY V + + ++ E+ K QF++ L +
Sbjct: 159 YYGRLSNLWEEY--NIYKPVTVCTCGLCRCGATSEPTKEREEEKIHQFVLGLDESRFGGL 216
Query: 112 RSNLMNRDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAA------HGKSKG 165
+ L+N D PSL + ++REEQRLA+ + +Q + A+ + A H +
Sbjct: 217 CATLINMDPLPSLGEIYSRVIREEQRLASVHVREQK---EEAVGFLARREQLDHHSRVDA 273
Query: 166 RDMRQVQCFSCKEYRHIIVNCAKKFCNYCKKPGHIIKEC 204
R + I + C+ C + GH KEC
Sbjct: 274 SSSRSEHTGGSRSNSII---KGRVTCSNCGRTGHEKKEC 309
>gi|147822140|emb|CAN77046.1| hypothetical protein VITISV_035257 [Vitis vinifera]
Length = 1478
Score = 53.1 bits (126), Expect = 7e-05, Method: Composition-based stats.
Identities = 40/142 (28%), Positives = 66/142 (46%), Gaps = 17/142 (11%)
Query: 7 SVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLSGIQ 66
SVD ++L+L+ YKT W K +Y D + + + I SQ DL + Y+ I
Sbjct: 318 SVDPXILLHLRAYKTCFKFWTQAKGLYTND-IQRLYKVASAIVHISQQDLDLSTYIGQIA 376
Query: 67 NLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLM-----KLRPEYKAARSNLMNRDLS 121
+L +++ ++ P+ Q Q++ D+F M L P+ + R ++
Sbjct: 377 SLKEEFLTVM----PLTPDVGAQ----QTQLDKFFMVLTLIGLXPDLEPIRDQILGSSSV 428
Query: 122 PSLDVCFKELLREEQRLATQTI 143
PSLD F LLR +TQT+
Sbjct: 429 PSLDDVFARLLRIS---STQTL 447
>gi|147832329|emb|CAN75516.1| hypothetical protein VITISV_021838 [Vitis vinifera]
Length = 996
Score = 53.1 bits (126), Expect = 8e-05, Method: Composition-based stats.
Identities = 50/203 (24%), Positives = 82/203 (40%), Gaps = 43/203 (21%)
Query: 7 SVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLSGIQ 66
SVD ++ L+ YKT W K +Y D I ++ + D+ + Y+ I
Sbjct: 78 SVDPKILHYLRAYKTCFKFWTQAKGLYTND-----------IQQFYK-DMDLSTYIGQIV 125
Query: 67 NLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKL-----RPEYKAARSNLMNRDLS 121
+L +++ ++ P + A+ Q Q + D+F M L RP+ ++ R ++
Sbjct: 126 SLKEEFLTLM----PFTNDAETQ----QIQTDKFFMALILIGLRPDLESVRDQILASPSV 177
Query: 122 PSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRH 181
PSLD F LLR +TQT+ + +AY + + + QC S
Sbjct: 178 PSLDDVFVRLLRLS---STQTLSTNGPSDSSVLAYQINSRGRRSGNRSRGQCPS------ 228
Query: 182 IIVNCAKKFCNYCKKPGHIIKEC 204
C YC K GH C
Sbjct: 229 ---------CTYCNKLGHTRDRC 242
>gi|147835935|emb|CAN59737.1| hypothetical protein VITISV_018174 [Vitis vinifera]
Length = 331
Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 49/224 (21%), Positives = 93/224 (41%), Gaps = 21/224 (9%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVY-NQDNTAKCFHLEYEIARYSQGDLSIQ 59
M ++ S++ + Y T K +W+ +Y N N +K + L + QGDL +
Sbjct: 29 MAXLINSMEPEISQGYILYNTTKXIWDAANLMYSNLGNDSKLYELSEKARTIQQGDLLVM 88
Query: 60 NYLSGIQNLWAK---YVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLM 116
Y + + L+ + Y D+++ +E A + E+ + +FL LR E+ R ++
Sbjct: 89 AYFNSLNILYXEIDLYQDIVWXN--LEDHATYLKLIEKERVFKFLSXLRYEFDQERGRIL 146
Query: 117 NRDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSC 176
+ PSL F + REE R+ ++ + + A + +++ +
Sbjct: 147 SSSPIPSLREVFNLIRREESRIGFMMSGLKSTTAETSALSTANQPTAGNKNIGANSVYVA 206
Query: 177 KEYRHIIVNCAKK------FCNYCKKPGHIIKEC---PTRPQNC 211
+ N KK +C++C+KP H C RP N
Sbjct: 207 GK------NAGKKDDKDSLWCDHCQKPRHTRDSCLKIHGRPANL 244
>gi|147784654|emb|CAN65932.1| hypothetical protein VITISV_016257 [Vitis vinifera]
Length = 498
Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 84/203 (41%), Gaps = 32/203 (15%)
Query: 7 SVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLSGIQ 66
SVD ++L+L+ YKT W K +Y D + + + I SQ DL + Y+ I
Sbjct: 78 SVDPRILLHLQAYKTCFKFWTQAKGLYTND-IQRLYKVASVIVHLSQQDLDLSTYIGQIA 136
Query: 67 NLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLM-----KLRPEYKAARSNLMNRDLS 121
+L +++ ++ P+ DV +Q++ D+F M LRP+ + R ++
Sbjct: 137 SLKEQFLTVM----PLT--PDVGA--QQTQLDKFFMVLTLIGLRPDLEPIRDQILGSSSV 188
Query: 122 PSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRH 181
SLD F LLR +TQT L + D+++ + Q S
Sbjct: 189 SSLDDVFARLLRIS---STQT-LPSDSASDSSVLVS--------------QTTSRGGRSG 230
Query: 182 IIVNCAKKFCNYCKKPGHIIKEC 204
+ C YC K GH C
Sbjct: 231 TRGRGQRPHCTYCNKLGHTRDRC 253
>gi|147766575|emb|CAN76224.1| hypothetical protein VITISV_017232 [Vitis vinifera]
Length = 674
Score = 52.8 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 37/146 (25%), Positives = 67/146 (45%), Gaps = 17/146 (11%)
Query: 7 SVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLSGIQ 66
SVD ++L+L+ YKT W K +Y D + + + I Q D+ + Y+ I
Sbjct: 78 SVDPKILLHLRAYKTCFKFWNQAKGLYTND-IQRLYKVASSIVNVRQQDMDLSTYIGQIA 136
Query: 67 NLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLM-----KLRPEYKAARSNLMNRDLS 121
+L +++ ++ + + ++++ D+F M LRP+ + R ++
Sbjct: 137 SLKEEFLTVMPLTTDVGD--------QRTQIDKFFMVLTLIGLRPDLETVRDQILGSSSI 188
Query: 122 PSLDVCFKELLREEQRLATQTILQQN 147
PSLD F LLR +TQT+ N
Sbjct: 189 PSLDDVFAHLLRIS---STQTLSSDN 211
>gi|147767251|emb|CAN71273.1| hypothetical protein VITISV_019661 [Vitis vinifera]
Length = 1276
Score = 52.8 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 36/146 (24%), Positives = 66/146 (45%), Gaps = 17/146 (11%)
Query: 7 SVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLSGIQ 66
SVD ++L+ + YKT W K +Y D + + + I Q D+ + Y+ I
Sbjct: 78 SVDPKILLHFRAYKTCFKFWNQAKGLYTND-IQRLYKVASSIVNVRQQDMDLSTYIGQIA 136
Query: 67 NLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLM-----KLRPEYKAARSNLMNRDLS 121
+L +++ ++ + + ++++ D+F M LRP+ + R ++
Sbjct: 137 SLKEEFLTVMPLTTDVGD--------QRTQIDKFFMVLTLIGLRPDLETVRDQILGSSSV 188
Query: 122 PSLDVCFKELLREEQRLATQTILQQN 147
PSLD F LLR +TQT+ N
Sbjct: 189 PSLDDVFARLLRIS---STQTLPSDN 211
>gi|147838635|emb|CAN65056.1| hypothetical protein VITISV_012379 [Vitis vinifera]
Length = 471
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 68/144 (47%), Gaps = 16/144 (11%)
Query: 7 SVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLSGIQ 66
SVD ++L+L+ YKT W K +Y +N + + + I SQ DL + Y+ I
Sbjct: 68 SVDPKILLHLRAYKTCFKFWTQAKGLYT-NNIQRLYKVASAIVHISQQDLDLSTYIGQIA 126
Query: 67 NLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLM-----KLRPEYKAARSNLMNRDLS 121
+L +++ ++ P+ DV +Q++ D+F M LRP+ + R ++
Sbjct: 127 SLKEEFLTVM----PLT--PDVGA--QQTQLDKFFMVLTLIGLRPDLEPVRDQILGSSSV 178
Query: 122 PSLDVCFKELLR--EEQRLATQTI 143
SLD F L R Q L + +I
Sbjct: 179 LSLDDVFARLFRISSTQTLPSDSI 202
>gi|147805214|emb|CAN66627.1| hypothetical protein VITISV_025008 [Vitis vinifera]
Length = 770
Score = 52.8 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 35/142 (24%), Positives = 66/142 (46%), Gaps = 9/142 (6%)
Query: 2 TWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNY 61
+WI+ +++ + ++ Y T ++WE L + ++ N + F ++ +IA Q L + Y
Sbjct: 89 SWIVNTLNPEIADSVIYYSTTHEVWEDLCERFSHSNAPRIFEIQRDIACLRQEQLFVSAY 148
Query: 62 LSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRDLS 121
+ ++ LW + + A +Q K QFLM L Y A R ++ +
Sbjct: 149 YTKLKGLWDELASY--------NAAXHGAQQDQQKLMQFLMDLNESYSAIRGQILLMNPL 200
Query: 122 PSLDVCFKELLREE-QRLATQT 142
PS+ + + +EE Q L T T
Sbjct: 201 PSVRQAYSSVSQEEKQHLLTLT 222
>gi|147796443|emb|CAN74819.1| hypothetical protein VITISV_034590 [Vitis vinifera]
Length = 970
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 89/214 (41%), Gaps = 19/214 (8%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
++WI+ SV + + +L + TA +W L+ + Q N + F ++ + SQG L +
Sbjct: 95 ISWILNSVHKDIADSLLYFDTAVGIWNDLRDRFCQSNGPRIFQIKKHLIALSQGSLDVST 154
Query: 61 YLSGIQNLWAKYVDMIYVQVPIE-----SLADVQGVHEQSKRDQFLMKLRPEYKAARSNL 115
Y + ++ LW D + P+ ++ +Q QFLM L + RS +
Sbjct: 155 YYTRLKILW----DELKGFQPLPECACGTMKTWMEFQQQEYVMQFLMGLNESFVQTRSQI 210
Query: 116 MNRDLSPSLDVCFKELLREEQR------LATQTILQQNKMHDNAIAYAAAHGKSKGRDMR 169
+ + P + F + ++E++ L T ++ +A +AA SK + R
Sbjct: 211 LMMEPLPPIAKVFSLVAQDERQCSINYGLYTPPDSVAANDSNSTVAISAARLNSKPKKDR 270
Query: 170 QVQCFSCKEYRHIIVNCAKKFCNYCKKPGHIIKE 203
C C H + C K Y PG+ K
Sbjct: 271 PT-CSHCGILGHTVDKCYKL---YGYPPGYKFKS 300
>gi|440577363|emb|CCI55368.1| PH01B035L11.13 [Phyllostachys edulis]
Length = 848
Score = 52.4 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 48/182 (26%), Positives = 76/182 (41%), Gaps = 30/182 (16%)
Query: 25 MWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLSGIQNLWAKYVDMIYVQVPIES 84
+WEYL++ Y Q + + F L+ E+ Q D SI ++ + +LW + ++
Sbjct: 96 IWEYLRERYQQSSDVQFFSLQRELETLRQKDSSIDDFFRALASLWHQ----------LDE 145
Query: 85 LAD--VQGVHEQSKRDQ-------FLMKLRPEYKAARSNLMNRDLSPSLDVCFKELLREE 135
LA Q H+ K D+ F+ +L E++ R+ L+NR P + L EE
Sbjct: 146 LASPLYQECHQVQKADRDHLRLYDFVCRLCLEFEPVRTQLLNRSPRPIVTEALSTLRAEE 205
Query: 136 --QRLATQ---TILQQNKMHDNA----IAYAAAHGKSKGRDM--RQVQCFSCKEYRHIIV 184
+ LA Q T+L D Y+ G G +VQC C +RH
Sbjct: 206 LHRGLAAQFVPTVLATPFFFDCTDGFCFDYSLYSGVCFGSVFAPTRVQCNYCNNFRHDYQ 265
Query: 185 NC 186
C
Sbjct: 266 RC 267
>gi|147797842|emb|CAN71931.1| hypothetical protein VITISV_013418 [Vitis vinifera]
Length = 670
Score = 52.4 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 37/132 (28%), Positives = 61/132 (46%), Gaps = 14/132 (10%)
Query: 7 SVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLSGIQ 66
SVD ++L+L+ YKT W K +Y D + + + I SQ DL + Y+ I
Sbjct: 78 SVDPKILLHLRAYKTCFKFWTQAKGLYTND-IQRLYKVASAIVHISQQDLDLSTYIGQIA 136
Query: 67 NLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLR-----PEYKAARSNLMNRDLS 121
+L +++ ++ P+ Q Q++ D+F M L P+ + R ++
Sbjct: 137 SLKEEFLTVM----PLTPDVGAQ----QTQLDKFFMVLTLIGLCPDLEPVRDQILGSSSV 188
Query: 122 PSLDVCFKELLR 133
PSLD F LLR
Sbjct: 189 PSLDDVFVRLLR 200
>gi|147791306|emb|CAN74499.1| hypothetical protein VITISV_013001 [Vitis vinifera]
Length = 993
Score = 52.4 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 41/146 (28%), Positives = 68/146 (46%), Gaps = 10/146 (6%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQG-DLSIQ 59
+TWI + S+ L + AK W+ L K Y+ + + + L E+ + Q SI
Sbjct: 75 LTWIRNTSIPSISNLLGSFDDAKSAWDMLTKRYSTTHGSMKYQLVVELHQLRQEPGQSIN 134
Query: 60 NYLSGIQNLWAKYVDMIYVQVPIESLA-DVQ---GVHEQSKRDQFLMKLRPEYKAARSNL 115
+Y ++ +W D I + P + + D Q + ++ + +FLM L +++ R L
Sbjct: 135 DYYDQLRFIW----DQIDLSDPTWAXSKDAQQYASIRDEFRLYEFLMSLHKDFEPIRGQL 190
Query: 116 MNRDLSPSLDVCFKEL-LREEQRLAT 140
+N PSLD EL LR Q L T
Sbjct: 191 LNXSXXPSLDTAVNELDLRTGQELGT 216
>gi|413956656|gb|AFW89305.1| hypothetical protein ZEAMMB73_651094 [Zea mays]
Length = 536
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 82/190 (43%), Gaps = 20/190 (10%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYN-QDNTAKCFHLEYEIARYSQGDLSIQ 59
+ W++ S+ ++ ++ +TA +W+ L +Y+ + N ++ + Q ++
Sbjct: 116 VAWLLASMSPTVSKRVEAMRTASQIWKTLSNIYSRKGNVMVMMEIQNKADAVKQMGRPVE 175
Query: 60 NYLSGIQNLWAKYVDMIYVQVPIESLADVQGVH---EQSKRDQFLMKLRPEYKAARSNLM 116
Y S +Q LW + Y + + D Q VH E + FL L E+++ R+
Sbjct: 176 QYASELQQLWGELDH--YAPLQMVCPQDAQMVHKWVEDRRVTHFLKNLDSEFESRRAVFC 233
Query: 117 NRDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSC 176
+++ P++D ++ EE RL + K AY A + +C++C
Sbjct: 234 HQESLPTMDEVVSAMIDEESRLRVMSSGNHVK-----PAYVAIEDR---------ECYNC 279
Query: 177 KEYRHIIVNC 186
E H+ NC
Sbjct: 280 GERGHLSYNC 289
>gi|147843456|emb|CAN82064.1| hypothetical protein VITISV_022772 [Vitis vinifera]
Length = 1224
Score = 52.4 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 48/203 (23%), Positives = 80/203 (39%), Gaps = 32/203 (15%)
Query: 7 SVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLSGIQ 66
SVD ++ +L+ YKT W K +Y D + + + I SQ DL + Y+ I
Sbjct: 97 SVDPRILFHLQAYKTCFKFWTQAKGLYTND-IQRLYKVASAIVHLSQQDLDLSTYIGQIA 155
Query: 67 NLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLM-----KLRPEYKAARSNLMNRDLS 121
+L +++ ++ P+ Q Q++ D+F M LRP+ + R ++
Sbjct: 156 SLKEQFLTVM----PLTPDVGAQ----QTQLDKFFMVLTLIGLRPDLEPIRDQILGSSSV 207
Query: 122 PSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRH 181
PSLD F LL L++ L + D+++ + Q S
Sbjct: 208 PSLDDVFACLLH----LSSTQTLPSDSASDSSVLVS--------------QTTSRGGRSG 249
Query: 182 IIVNCAKKFCNYCKKPGHIIKEC 204
+ C YC K GH C
Sbjct: 250 TRGRGQRPHCTYCNKLGHTRDRC 272
>gi|147785726|emb|CAN68682.1| hypothetical protein VITISV_024814 [Vitis vinifera]
Length = 1248
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 86/175 (49%), Gaps = 10/175 (5%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQD-NTAKCFHLEYEIARYSQGDLSIQ 59
M W+ S+ + TAKD+W +++ Y++ + A+ + ++ + QGD ++
Sbjct: 23 MAWLWNSMILEISDTCMFLATAKDIWNAIQQTYSKARDAAQVYEVKVKNVAAKQGDKTVT 82
Query: 60 NYLSGIQNLWAK--YVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMN 117
Y + +++LW + + +I + P E A ++ EQ + FL+ L PE+ R ++
Sbjct: 83 EYANQLKSLWQELDHYRVIKTKCP-EDAAILKDFIEQDRVYDFLVGLNPEFDQVRIQILG 141
Query: 118 R-DLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQV 171
+ ++S CF E++ +R ++ L N + ++ A A G + +M +V
Sbjct: 142 KQEVS-----CFNEVVALIRREESRRCLMLNPQNTDSSAMVAGSGNNSATNMERV 191
>gi|147777318|emb|CAN71573.1| hypothetical protein VITISV_030365 [Vitis vinifera]
Length = 280
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 68/141 (48%), Gaps = 6/141 (4%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVY-NQDNTAKCFHLEYEIARYSQGDLSIQ 59
M+W++ S+ + N + TAK++W+ K + +++NT++ +E + QG+L++
Sbjct: 85 MSWLVNSMTADIGENFLSFDTAKEIWDTAKDTFSDKENTSEIIQIEGILHDLRQGNLTVT 144
Query: 60 NYLSGIQNLWAKYVDMIYVQVPIESLAD---VQGVHEQSKRDQFLMKLRPEYKAARSNLM 116
Y + + LW + +D V + D + + E + +FL+ L R +M
Sbjct: 145 EYFNTLTRLW-RQLDTFEVH-NWNCVTDGFLYKKIVEGKRVFKFLLGLNKNLDEIRGRIM 202
Query: 117 NRDLSPSLDVCFKELLREEQR 137
P+L F E+ REE R
Sbjct: 203 GVKPLPNLREAFSEVRREESR 223
>gi|147825255|emb|CAN71088.1| hypothetical protein VITISV_033975 [Vitis vinifera]
Length = 285
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 83/205 (40%), Gaps = 36/205 (17%)
Query: 7 SVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLSGIQ 66
SVD ++ +L+ YKT W K +Y D + + + + Q D+ + Y+ I
Sbjct: 78 SVDPKILHHLRAYKTCFKFWTQAKGLYTND-IQRFYKVVSDTVHVRQQDMDLSAYIGRIA 136
Query: 67 NLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLM-----KLRPEYKAARSNLMNRDLS 121
+L +++ ++ +E+ +Q + D+F M LRP+ K+ R ++
Sbjct: 137 SLKKEFLTLMPFTNGVEA--------QQIQTDKFFMVLTLISLRPDLKSVRDQILASPSV 188
Query: 122 PSLDVCFKELLREEQRLATQTILQQNKMHDNAIA--YAAAHGKSKGRDMRQVQCFSCKEY 179
PSLD LLR +TQT+ + +A + G+S R Q C +
Sbjct: 189 PSLDDVVARLLRLS---STQTLSTDGPSDLSMLASQTNSREGRSGNRGRGQ-----CPQ- 239
Query: 180 RHIIVNCAKKFCNYCKKPGHIIKEC 204
C YC K GH C
Sbjct: 240 -----------CTYCNKLGHTRDRC 253
>gi|114053447|gb|AAT40537.2| hypothetical protein SDM1_3t00003 [Solanum demissum]
Length = 241
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 42/68 (61%)
Query: 2 TWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNY 61
+WI+ S+ + LV +L+ AK++W+ L Y+Q N AK + L+ EI +Q +L + +Y
Sbjct: 4 SWILNSLSKDLVDSLQYVNNAKELWDKLADRYDQANGAKLYQLQREINELTQDNLDVTSY 63
Query: 62 LSGIQNLW 69
+ ++ LW
Sbjct: 64 YTKMRKLW 71
>gi|356575040|ref|XP_003555650.1| PREDICTED: uncharacterized protein LOC100817175 [Glycine max]
Length = 2045
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/211 (19%), Positives = 88/211 (41%), Gaps = 36/211 (17%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
++WI+ SV S+ ++ A+++W LK Y+Q + + L+ E + QG L++
Sbjct: 427 VSWIVHSVATSIRQSILWMDKAEEIWRDLKSRYSQGDLLRISDLQQEASTMKQGTLTVTE 486
Query: 61 YLSGIQNLWAKYVDM-------IYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARS 113
Y + ++ +W + + ++ + + + + QFL L +Y RS
Sbjct: 487 YFTCLRVIWDEIENFRPDPICSCNIRCSCNAFTIIAQRKLEDRAMQFLRGLNEQYANIRS 546
Query: 114 NLMNRDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQC 173
+++ D P++ F + ++E++L T G +
Sbjct: 547 HVLLMDPIPTISKIFSYVAQQERQLLGNT--------------------GPGINF----- 581
Query: 174 FSCKEYRHIIVNCAKKFCNYCKKPGHIIKEC 204
E + I +N AK C++C + GH+ C
Sbjct: 582 ----EPKDISINAAKTVCDFCGRIGHVESTC 608
>gi|147774740|emb|CAN70355.1| hypothetical protein VITISV_013711 [Vitis vinifera]
Length = 862
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 59/109 (54%), Gaps = 6/109 (5%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVY-NQDNTAKCFHLEYEIARYSQGDLSIQ 59
M+W++ ++ + N Y T K++W+ ++ Y N +NT++ F +E + QGDLS+
Sbjct: 90 MSWLINLMNTDIGENFLLYGTTKEIWDAARETYSNFENTSEIFEIEATLHDLRQGDLSVT 149
Query: 60 NYLSGIQNLWAKYVDMIYVQV---PIESLADVQGVHEQSKRDQFLMKLR 105
Y + + W +++DM V P E A Q + EQ + +FL+ L+
Sbjct: 150 QYFNILSCHW-QHLDMFEVHTWKCP-EDTALYQKIVEQKRTFKFLLGLK 196
>gi|147776237|emb|CAN63185.1| hypothetical protein VITISV_000411 [Vitis vinifera]
Length = 577
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 68/145 (46%), Gaps = 15/145 (10%)
Query: 7 SVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLSGIQ 66
SVD ++L+L+ YKT W K +Y D + + + I SQ DL + Y+ I
Sbjct: 62 SVDLKILLHLRAYKTCFKFWTRAKGLYTND-IQRLYKVASVIVHISQQDLDLSTYIGQIA 120
Query: 67 NLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLM-----KLRPEYKAARSNLMNRDLS 121
+L +++ ++ P+ Q Q++ D+F M LRP+ + R ++
Sbjct: 121 SLKEEFLTVM----PLTPDVGAQ----QTQLDKFFMVLTLIGLRPDLEPVRDQILGSSSV 172
Query: 122 PSLDVCFKELLREEQRLATQTILQQ 146
PSLD F +L EE + + ++Q
Sbjct: 173 PSLD-DFLKLALEEAAVVPEVYMEQ 196
>gi|255591341|ref|XP_002535493.1| conserved hypothetical protein [Ricinus communis]
gi|223522917|gb|EEF26889.1| conserved hypothetical protein [Ricinus communis]
Length = 339
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 58/117 (49%), Gaps = 10/117 (8%)
Query: 89 QGVHEQSKRDQFLMKLRPEYKAARSNLMNRDLSPSLDVCFKELLREEQRLATQTILQQNK 148
Q +Q + QFLM LR E+++ R L+++ P+LDV EL+ EE RL +L ++
Sbjct: 17 QKARDQQRLFQFLMHLRLEFESIRGQLLHKSPLPTLDVALSELIAEEIRL---RVLGSSR 73
Query: 149 MHDNAIAYAAAHGKSKGRDMRQVQCFSCKE--YRHIIVNCAKKFCNYCKKPGHIIKE 203
+ A AA +S + Q F+ ++ RH C YC GH++K+
Sbjct: 74 SAEPATVLAAFGSRSS---CHKGQPFASRDSSSRHAFGQSIG--CRYCHAWGHMLKD 125
>gi|224119104|ref|XP_002317986.1| predicted protein [Populus trichocarpa]
gi|222858659|gb|EEE96206.1| predicted protein [Populus trichocarpa]
Length = 232
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 59/121 (48%), Gaps = 19/121 (15%)
Query: 96 KRDQFLMK-LRPEYKAARSNLMNRDLS------PSLDVCFKELLREEQRLATQTILQQNK 148
K +QF +K LRP R ++ LS PSL+ +E++ EE L L+++
Sbjct: 86 KSNQFEIKYLRPTL--VRITCISFSLSSTLGSLPSLNTAIQEIIFEETCLN----LEKSP 139
Query: 149 MHDNAIAYA-AAHGKSKGRDMRQVQCFSCKEYRHIIVNCAKKFCNYCKKPGHIIKECPTR 207
D A+A ++H KS + C +C + H+ C C YC GHI++ CPTR
Sbjct: 140 QFDIALATTRSSHQKSGNQT-----CKNCHQMGHVFATCPTIECIYCHAFGHILEHCPTR 194
Query: 208 P 208
P
Sbjct: 195 P 195
>gi|449458922|ref|XP_004147195.1| PREDICTED: uncharacterized protein LOC101216505 [Cucumis sativus]
Length = 907
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/204 (21%), Positives = 77/204 (37%), Gaps = 52/204 (25%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
++WI+ SV + + N+ A+ +W LK+ + + N + F L+ + G L
Sbjct: 136 ISWILNSVSKPISANILFSDLARTIWVELKERFQKKNAPRIFQLKRSLTSLQLGRLPSDG 195
Query: 61 YLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRDL 120
G FLM L + A++ L+ D
Sbjct: 196 VSRG-----------------------------------FLMGLNENFFQAQAQLLLMDP 220
Query: 121 SPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYR 180
PS + LL+EEQ+ + ++ +A+A+A + SKG + S KE
Sbjct: 221 LPSTSRAYSLLLKEEQQRSIRSFASST----SAMAFAVSSNSSKGNPTNK----SRKE-- 270
Query: 181 HIIVNCAKKFCNYCKKPGHIIKEC 204
+ C +C PGH + +C
Sbjct: 271 -------RPMCTHCNLPGHTVDKC 287
>gi|147804744|emb|CAN69359.1| hypothetical protein VITISV_024911 [Vitis vinifera]
Length = 696
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/204 (20%), Positives = 87/204 (42%), Gaps = 24/204 (11%)
Query: 2 TWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQD-NTAKCFHLEYEIARYSQGDLSIQN 60
TW++ S++ + ++ TAK+MW+ +K++++ D N + F L ++ QG+ S+
Sbjct: 52 TWMLNSLEPEIAASVGLASTAKEMWDAIKEMFSNDGNNSHTFSLFQQLVDNKQGERSLPE 111
Query: 61 YLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRDL 120
+ + + + ++ ++ + +E+ + E FLM L + RS L+
Sbjct: 112 FFAAYRGIINEFRKLLPLSTDLET---QKHQWENLFVCGFLMNLNEQCNTHRSQLLGDST 168
Query: 121 SPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYR 180
+L F L L++ + + +A+A G + GR
Sbjct: 169 MSTLQSAFSRLQSVSLTLSSPGV----DLEHSAMAACGRVGDT-GRS------------- 210
Query: 181 HIIVNCAKKFCNYCKKPGHIIKEC 204
+ N + C +C K GH + +C
Sbjct: 211 --VXNRDRSLCEFCGKQGHTVDQC 232
>gi|147797476|emb|CAN64673.1| hypothetical protein VITISV_007430 [Vitis vinifera]
Length = 1079
Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 37/133 (27%), Positives = 60/133 (45%), Gaps = 14/133 (10%)
Query: 7 SVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLSGIQ 66
SVD ++L+L+ YKT W K +Y D + + + I SQ DL + Y+ I
Sbjct: 62 SVDPKILLHLQAYKTCFKFWTQAKGLYTND-IQRLYKVASAIVHISQQDLDLSTYIGQIA 120
Query: 67 NLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLM-----KLRPEYKAARSNLMNRDLS 121
+L +++ ++ P+ Q Q+ D+F M LRP+ + R ++
Sbjct: 121 SLKEEFLTVM----PLTPDVGAQ----QTHLDKFFMVLTLIGLRPDLEPVRDQILGSSSV 172
Query: 122 PSLDVCFKELLRE 134
PSLD K L E
Sbjct: 173 PSLDDFLKLALEE 185
>gi|147806117|emb|CAN67762.1| hypothetical protein VITISV_040650 [Vitis vinifera]
Length = 1316
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 73/184 (39%), Gaps = 28/184 (15%)
Query: 25 MWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLSGIQNLWAKYVDMIYVQVPIES 84
MWE LK+ Y N + L EI Q +++ Y + I+ +W + Y+++P +
Sbjct: 1 MWEDLKERYAVGNAPRVHQLRSEIVNLKQEGMTVAAYYAKIKGMWDELNQ--YIEIPECT 58
Query: 85 LADVQGV---HEQSKRDQFLMKLR-PEYKAARSNLMNRDLSPSLDVCFKELLREEQRLAT 140
Q + E K QFLM L + RS+++ D P+L + + +EE+ +
Sbjct: 59 CGAAQAIVKSREDEKAHQFLMGLDDTTFGTVRSSILALDPLPTLGKIYAMVTQEERHRSM 118
Query: 141 QTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCAKKFCNYCKKPGHI 200
++G D ++ F+ + C +C K GH
Sbjct: 119 ----------------------ARGADRAEITVFAAXTEKPGGQTNKSGSCTHCGKTGHD 156
Query: 201 IKEC 204
+ +C
Sbjct: 157 VADC 160
>gi|147779660|emb|CAN64955.1| hypothetical protein VITISV_029829 [Vitis vinifera]
Length = 1368
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/200 (21%), Positives = 93/200 (46%), Gaps = 19/200 (9%)
Query: 22 AKDMWEYLKKVYNQD-NTAKCFHLEYEIARYSQGDLSIQNYLSGIQNLWAK--YVDMIYV 78
AKD+W+ +++ Y++ + A+ + +E + QG ++ Y + + LW + + +I
Sbjct: 61 AKDIWDAIQQTYSKARDAAQVYEVEVKTIAAKQGSKTVTEYANQLNALWQELDHYRVIKT 120
Query: 79 QVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRDLSPSLDVCFKE---LLREE 135
+ P E A ++ EQ + FL+ L PE+ R ++ + P CF E L+R +
Sbjct: 121 KCP-EDAAILKDFIEQDRVYDFLVGLNPEFDQVRIQILGKQEVP----CFNEVXALIRGK 175
Query: 136 QRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCAKKFCNYCK 195
+ + ++++ + + D + A +G + ++ N +C +CK
Sbjct: 176 E--SRRSVMXEPQTLDGSTLVAKTEYSXQGXNNLPKHLGRDNXWKE---NKDNLWCTFCK 230
Query: 196 KPGHIIKEC---PTRPQNCQ 212
KP H ++C +P +C+
Sbjct: 231 KPRHTKEKCWKLNGKPPSCE 250
>gi|51038185|gb|AAT93988.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1480
Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 36/145 (24%), Positives = 64/145 (44%), Gaps = 15/145 (10%)
Query: 3 WIMGSV-DQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNY 61
W+ GSV D L + ++P +TA+D+W + ++ + + +L +E +QG+L I +Y
Sbjct: 88 WLFGSVSDAILDVAMEPDQTARDLWVSIDDIFQANKEPRAIYLSHEFHSMTQGNLPIADY 147
Query: 62 LSGIQNLWAKYVDMIYVQVPIESLADV-QGVHEQSKRDQFLMKLRPEYKAARSNLMNRDL 120
V+ +++L DV V E L L + + N+ +
Sbjct: 148 CQK-------------VKTAVDALRDVGHPVSESQLVLNLLSGLNSRFSSTADNIAGAPV 194
Query: 121 SPSLDVCFKELLREEQRLATQTILQ 145
PS LL +E RLA + +Q
Sbjct: 195 LPSFASARNTLLLKELRLANEHKVQ 219
>gi|147856623|emb|CAN80320.1| hypothetical protein VITISV_034560 [Vitis vinifera]
Length = 1261
Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 37/136 (27%), Positives = 65/136 (47%), Gaps = 9/136 (6%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQG-DLSIQ 59
+TWI + S+ L + AK W+ L K Y+ + + + L E+ + Q SI
Sbjct: 75 LTWIRNTSIPSISNLLGSFDDAKSAWDMLTKRYSTTHGSMKYQLVVELHQLRQEPGQSIN 134
Query: 60 NYLSGIQNLWAKYVDMIYVQVPIESLA-DVQ---GVHEQSKRDQFLMKLRPEYKAARSNL 115
+Y ++ +W D I + P + + D Q + ++ + +FLM L +++ R L
Sbjct: 135 DYYDQLRFIW----DQIDLSDPTWACSKDAQQYASIRDEFRLYEFLMSLHKDFEPIRGQL 190
Query: 116 MNRDLSPSLDVCFKEL 131
+NR +PSLD EL
Sbjct: 191 LNRSPAPSLDTAVNEL 206
>gi|7767664|gb|AAF69161.1|AC007915_13 F27F5.19 [Arabidopsis thaliana]
Length = 1309
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 87/212 (41%), Gaps = 30/212 (14%)
Query: 2 TWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNY 61
TW++ V + + ++ Y+ A +MW L + N + + LE I Q +L + Y
Sbjct: 136 TWLLNVVSKEIYDSILYYEDAVEMWNDLFSRFRVSNLPRKYQLEQSIHTLKQRNLDLSTY 195
Query: 62 LSGIQNLWAKYVDMIYVQV---PIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNR 118
+ + LW + + + V + + ++ E S+ QFLM L + R ++N
Sbjct: 196 YTKKKTLWVQLANTRVLTVRKCNCDHVKELLEEAETSRIIQFLMGLNDNFAHIRGQILNM 255
Query: 119 DLSPSLDVCFKELLREE-QRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCK 177
P L + L ++E QRL T L AA QVQ
Sbjct: 256 KPRPGLTEIYNMLDQDESQRLVGSTPLSN---------LTAAF---------QVQASPVI 297
Query: 178 EYRHIIVNCA-----KKFCNYCKKPGHIIKEC 204
+ + VN A K C++C K GH++ +C
Sbjct: 298 DSQ---VNMAQGSYKKPKCSFCNKLGHLVDKC 326
>gi|147815786|emb|CAN63730.1| hypothetical protein VITISV_030286 [Vitis vinifera]
Length = 1205
Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 50/203 (24%), Positives = 81/203 (39%), Gaps = 32/203 (15%)
Query: 7 SVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLSGIQ 66
SVD ++L+L+ YKT W K +Y D + + + I SQ DL + Y+ I
Sbjct: 62 SVDPRILLHLQAYKTCFKFWTQAKGLYTND-IQRLYKVASAIVHLSQQDLDLSTYIGQIA 120
Query: 67 NLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLM-----KLRPEYKAARSNLMNRDLS 121
+L +++ ++ P+ Q Q++ D+ M LR + + R ++
Sbjct: 121 SLKEQFLTVM----PLTPDVGAQ----QTQLDKXFMVLTLIGLRXDLEPIRDQILGSSSV 172
Query: 122 PSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRH 181
PSLD F LLR +TQT L + D+++ + Q S
Sbjct: 173 PSLDDVFARLLRIS---STQT-LPSDSASDSSVLVS--------------QTTSRGGRSX 214
Query: 182 IIVNCAKKFCNYCKKPGHIIKEC 204
+ C YC K GH C
Sbjct: 215 TRGRGQRPHCTYCNKLGHTRDRC 237
>gi|147794669|emb|CAN78026.1| hypothetical protein VITISV_032464 [Vitis vinifera]
Length = 685
Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 43/173 (24%), Positives = 75/173 (43%), Gaps = 17/173 (9%)
Query: 44 LEYEIARYSQG-DLSIQNYLSGIQNLWAKYVDMIYVQVPIESLA-----DVQGVH----E 93
L+ IA+ Q +S+ Y + LW + ++ P+ S +H E
Sbjct: 98 LKTSIAKCEQSKSMSVTTYYGKLNVLWEE----LFKHEPLISCTCCSSCTAASLHQARCE 153
Query: 94 QSKRDQFLMKLRPE-YKAARSNLMNRDLSPSLDVCFKELLREEQRLATQTILQQNKMHDN 152
Q K FLM L + Y R+N++++D PSLD ++ ++++E+ + + +
Sbjct: 154 QEKLHDFLMGLNTDLYAQLRTNILSQDPLPSLDRAYQLVIQDERVRLAKAVTKDKPAEVL 213
Query: 153 AIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNC-AKKFCNYCKKPGHIIKEC 204
A G+ +G+ R V C CK+ H C + C +C K GH C
Sbjct: 214 GFAVRTGAGRGRGKTERPV-CSHCKKTGHETSTCWSLVACPHCHKHGHDKNNC 265
>gi|52354133|gb|AAU44387.1| hypothetical protein AT1G21280 [Arabidopsis thaliana]
Length = 237
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 63/138 (45%), Gaps = 12/138 (8%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
M W+M S+ L+ ++ +TA MWE L++V+ K + L +A QG S++
Sbjct: 87 MYWLMNSMTDKLLESVMYAETAHKMWEDLRRVFVPCVDLKIYQLRRRLATLRQGGDSVEE 146
Query: 61 YLSGIQNLWAKYVDMIYVQVP--------IESLADVQGVHEQSKRDQFLM--KLRPEYKA 110
Y + +W + + Y +P E + E+ +R +FLM KL ++A
Sbjct: 147 YFGKLSKVWMELSE--YAPIPECKCGGCNCECTKRAEEAREKEQRYEFLMGLKLNQGFEA 204
Query: 111 ARSNLMNRDLSPSLDVCF 128
+ +M + PSL F
Sbjct: 205 VTTKIMFQKPPPSLHEAF 222
>gi|15218961|ref|NP_173550.1| uncharacterized protein [Arabidopsis thaliana]
gi|28393025|gb|AAO41947.1| unknown protein [Arabidopsis thaliana]
gi|28827240|gb|AAO50464.1| unknown protein [Arabidopsis thaliana]
gi|55740501|gb|AAV63843.1| hypothetical protein At1g21280 [Arabidopsis thaliana]
gi|332191960|gb|AEE30081.1| uncharacterized protein [Arabidopsis thaliana]
Length = 237
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 63/138 (45%), Gaps = 12/138 (8%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
M W+M S+ L+ ++ +TA MWE L++V+ K + L +A QG S++
Sbjct: 87 MYWLMNSMTDKLLESVMYAETAHKMWEDLRRVFVPCVDLKIYQLRRRLATLRQGGDSVEE 146
Query: 61 YLSGIQNLWAKYVDMIYVQVP--------IESLADVQGVHEQSKRDQFLM--KLRPEYKA 110
Y + +W + + Y +P E + E+ +R +FLM KL ++A
Sbjct: 147 YFGKLSKVWMELSE--YAPIPECKCGGCNCECTKRAEEAREKEQRYEFLMGLKLNQGFEA 204
Query: 111 ARSNLMNRDLSPSLDVCF 128
+ +M + PSL F
Sbjct: 205 VTTKIMFQKPPPSLHEAF 222
>gi|147809553|emb|CAN71207.1| hypothetical protein VITISV_030632 [Vitis vinifera]
Length = 902
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 81/194 (41%), Gaps = 21/194 (10%)
Query: 21 TAKDMWEYLKKVY-NQDNTAKCFHLEYEIARYSQGDLSIQNYLSGIQNLWAKYVDMIYVQ 79
TAKD+W+ +++ Y + +N ++ F ++ + + QGD + Y + + LW +D+ +
Sbjct: 110 TAKDVWDAIRETYFDIENASQNFEIKTRLWQMKQGDQEVTEYYTEMLGLWQD-LDLSCEE 168
Query: 80 VPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRDLSPSLDVCFKELLREEQRLA 139
+ E + +FL L E RS +++R PS+ F E+ REE R+
Sbjct: 169 DCTRDSVRFKKKMENERVFEFLAGLNCELDNIRSRVLSRRPLPSIREVFSEVRREESRIV 228
Query: 140 ---------TQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCAKKF 190
T+L A+ H + G S ++ + + +
Sbjct: 229 MLDLSFGREGSTLLTHGP---PAVVGRGPHVAASGPHAAGSSGPSPRQSK-------RTY 278
Query: 191 CNYCKKPGHIIKEC 204
C +CKK GH C
Sbjct: 279 CEHCKKLGHTKDTC 292
>gi|147771263|emb|CAN72018.1| hypothetical protein VITISV_001841 [Vitis vinifera]
Length = 1225
Score = 50.8 bits (120), Expect = 4e-04, Method: Composition-based stats.
Identities = 50/203 (24%), Positives = 81/203 (39%), Gaps = 32/203 (15%)
Query: 7 SVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLSGIQ 66
SVD ++ +L+ YKT W K +Y D + + + I SQ DL + Y+ I
Sbjct: 59 SVDPRILXHLQAYKTCFKFWTQAKGLYTND-IQRLYKVASAIVHLSQQDLDLSTYIGQIA 117
Query: 67 NLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLM-----KLRPEYKAARSNLMNRDLS 121
+L +++ ++ P+ Q Q++ D+F M LRP+ + R ++
Sbjct: 118 SLKEQFLTVM----PLTPDVGAQ----QTQLDKFFMVLTLIGLRPDLEPIRDQILGSSSV 169
Query: 122 PSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRH 181
SLD F LLR +TQT L + D+++ + Q S
Sbjct: 170 XSLDDVFARLLRIS---STQT-LPSDSASDSSVLVS--------------QTTSRGGRSG 211
Query: 182 IIVNCAKKFCNYCKKPGHIIKEC 204
+ C YC K GH C
Sbjct: 212 TRGRGQRPHCTYCNKLGHTRDRC 234
>gi|147770259|emb|CAN71862.1| hypothetical protein VITISV_003938 [Vitis vinifera]
Length = 984
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 79/159 (49%), Gaps = 10/159 (6%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYN-QDNTAKCFHLEYEIARYSQGDLSIQ 59
M+W++ S+ + TAKD+W+ + K Y+ + N + F L+ I Q L++
Sbjct: 205 MSWLLNSIQPEIGKPFLFLSTAKDIWDAVVKAYSKKGNATRIFELKGAIHETKQQGLNVL 264
Query: 60 NYLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRD---QFLMKLRPEYKAARSNLM 116
+Y + ++ LW + +D ++ IES D + E +R+ +FL LRP ++++
Sbjct: 265 SYFNKLKILWEE-LD-VHQHWEIESPRDAAKLVEIPERERIFEFLAGLRPYTQSSKPAAA 322
Query: 117 NRDLSP----SLDVCFKELLREEQRLATQTILQQNKMHD 151
+ SP L++ +K L + E L+T Q+ + +
Sbjct: 323 GTENSPFTKDQLELLYKLLGKTEVTLSTSCAFAQSGITE 361
>gi|147816676|emb|CAN77339.1| hypothetical protein VITISV_038116 [Vitis vinifera]
Length = 400
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 93/207 (44%), Gaps = 24/207 (11%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNT-AKCFHLEYEIARYSQGDLSIQ 59
M+W++ + + L+ T K++W + ++Y++ A+ + + +I QG ++I
Sbjct: 29 MSWLLNLILPEISRRLRLLPTTKEIWHSVNQIYSKIGVAAQIYEPKVQIHWTEQGTMTIN 88
Query: 60 NYLSGIQNLWAKYVDMIYVQVPIESLAD---VQGVHEQSKRDQFLMKLRPEYKAARSNLM 116
Y + +++LW + +D+ Y V +ES AD ++ + +FL L PE R ++
Sbjct: 89 QYYNTMRSLWLE-LDL-YQTVEMESAADSVKLKNFLGFERLFEFLAGLNPELDQVRDQVL 146
Query: 117 NRDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHG------------KSK 164
+R+ PSL + E+ R + ++ N +N I A + K++
Sbjct: 147 SREPFPSLKEAHAYVKGEDSR---RIMMLLNSSTENLIVTAPNNSALLASNSILGVPKTE 203
Query: 165 GR---DMRQVQCFSCKEYRHIIVNCAK 188
GR D + C C RH C K
Sbjct: 204 GRKPLDRDGLWCDYCHNSRHTRDKCWK 230
>gi|147805548|emb|CAN76348.1| hypothetical protein VITISV_028496 [Vitis vinifera]
Length = 213
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 61/132 (46%), Gaps = 14/132 (10%)
Query: 7 SVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLSGIQ 66
SVD ++L+L+ YKT W K +Y D + + + I +Q DL + Y+ I
Sbjct: 78 SVDPKILLHLRAYKTYFKFWTQAKGLYTND-IQRLYKVASAIVHINQQDLDLSTYIGQIV 136
Query: 67 NLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLM-----KLRPEYKAARSNLMNRDLS 121
+L +++ M+ + I + +Q + DQF M LRP+ + +++
Sbjct: 137 SLKEEFLTMMPLTPDIGA--------QQIQLDQFFMVLTLIGLRPDLEPIHDQILSSSSV 188
Query: 122 PSLDVCFKELLR 133
PSLD F L R
Sbjct: 189 PSLDDVFARLFR 200
>gi|147774742|emb|CAN70357.1| hypothetical protein VITISV_013713 [Vitis vinifera]
Length = 1568
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 85/209 (40%), Gaps = 49/209 (23%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQD-NTAKCFHLEYEIARYSQGDLSIQ 59
M+W++ S++ + N + TAK +W+ K+ Y+ NT++ F Q DL +
Sbjct: 306 MSWLINSMNNDIGENFLLFGTAKHIWDAXKETYSTSKNTSEVFQ---------QLDL-FE 355
Query: 60 NYLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRD 119
+ + A Y ++ EQ + +F + L E R +M
Sbjct: 356 THSWKCSDDAATYRQIV----------------EQKRLFKFFLGLNRELDDVRGRIMGIK 399
Query: 120 LSPSLDVCFKELLREEQRLATQTILQQNKMHD----NAIAYAAAHGKSKGRDMRQVQCFS 175
PSL F E+ REE R + ++ +K +A A AA S G D ++
Sbjct: 400 PLPSLREAFSEVRREESR---KKVMMGSKEQPAPTLDASALAARSFNSSGGDHQKRD--- 453
Query: 176 CKEYRHIIVNCAKKFCNYCKKPGHIIKEC 204
+ +C+YCKKPGH + C
Sbjct: 454 ------------RPWCDYCKKPGHYKETC 470
>gi|147772908|emb|CAN64580.1| hypothetical protein VITISV_002159 [Vitis vinifera]
Length = 1453
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/217 (21%), Positives = 94/217 (43%), Gaps = 24/217 (11%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFH-LEYEIARYSQGDLSIQ 59
M W+ S+ + TAKD+W+ +++ Y++ A H ++ + QGD +I
Sbjct: 149 MAWLWNSMIPEISDTCMFLATAKDIWDAIQQTYSKARDAAQVHEVKVKTIAAKQGDKTIT 208
Query: 60 NYLSGIQNLWAK--YVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMN 117
Y + +++LW + + +I + P ++ A ++ EQ + FL+ L PE+ ++
Sbjct: 209 EYANQLKSLWQELDHYRVIKTKCPXDA-AILKDFIEQDRVYDFLVGLNPEFDQVXIQILG 267
Query: 118 RDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFS-- 175
+ CF E++ ++ L N + ++ A A G + +M +V
Sbjct: 268 KQEV----XCFNEVVALIXGXESRRCLMLNPQNTDSSAMVAGSGNNSATNMERVLVSGNG 323
Query: 176 --------CKEYRHIIVNCAKKFCNYCKKPGHIIKEC 204
++Y+ + +C YCKK H + C
Sbjct: 324 RSSQPKTQNRDYKDNL------WCTYCKKARHTRERC 354
>gi|3695393|gb|AAC62795.1| contains similarity to retroviral aspartyl proteases (Pfam:
rvp.hmm, score: 11.80) [Arabidopsis thaliana]
Length = 1244
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 97/229 (42%), Gaps = 28/229 (12%)
Query: 2 TWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNY 61
+W++ SV + ++ A D+W + ++ N + ++L EI + QG LS+ Y
Sbjct: 115 SWLLNSVSPQIYRSILRMNDATDIWRDIYGRFHMTNLPRTYNLTQEIQDFRQGSLSLSEY 174
Query: 62 LSGIQNLWAKYVDMI-YVQVPIES-----LADVQGVHEQSKRDQFLMKLRPEYKAARSNL 115
+ ++ LW D++ + P + + +Q E++K +FL L Y R +
Sbjct: 175 YTQLRILW----DLLDSTEEPDDPCTCGKVLRLQQKAERAKTVKFLAGLNESYSIVRRQI 230
Query: 116 MNRDLSPSLDVCFKELLRE------EQRLATQTILQQNKMHDNAIAYA---AAHGKSKGR 166
+ + PSL + L ++ ++ Q +K+ A+ +G +KGR
Sbjct: 231 IAKKALPSLVEVYNILDQDYSQKGFSTNVSPPAAFQVSKISSTALTPKICYVQNGPNKGR 290
Query: 167 DMRQVQCFSCKEYRHIIVNCAKKFCNYCKKPGH--IIKECPTRPQNCQA 213
+ C C + HI C KK + PG + E T+PQ A
Sbjct: 291 PI----CSFCNKVGHIAEKCYKK---HGYPPGFKGKLPEKGTKPQPVAA 332
>gi|218199595|gb|EEC82022.1| hypothetical protein OsI_25984 [Oryza sativa Indica Group]
Length = 964
Score = 50.4 bits (119), Expect = 5e-04, Method: Composition-based stats.
Identities = 36/137 (26%), Positives = 65/137 (47%), Gaps = 17/137 (12%)
Query: 1 MTWIMGSVDQSLVLNLKPYKT-AKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQ 59
++W+ G++ L+ ++ + T A+ +W L+ + + A+ L E + QGDLS+
Sbjct: 229 LSWMYGTISTDLLESVMTHTTTARLVWRSLEHQFLGNREARALDLNAEFYNFQQGDLSVT 288
Query: 60 NYLSGIQNLWAKYVDMIYVQVPIE----SLADVQGVHEQSKRDQFLMKLR---PEYKAAR 112
+Y ++L A D+ V P+ +LA +QG HE Q +R P + R
Sbjct: 289 DY---CRHLKAMAADLADVGEPVGDRTLTLATIQGFHENFAHLQSAFTMRKPFPSFAEVR 345
Query: 113 SNLM------NRDLSPS 123
S L+ NR +P+
Sbjct: 346 SQLLLDELTKNRSRTPA 362
>gi|147781731|emb|CAN69747.1| hypothetical protein VITISV_016320 [Vitis vinifera]
Length = 634
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 64/134 (47%), Gaps = 14/134 (10%)
Query: 7 SVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLSGIQ 66
SVD ++L+L+ YKT W K +Y D + + + I Q D+ + Y+ I
Sbjct: 62 SVDPKILLHLRAYKTCFKFWNQAKGLYTND-IQRLYKVTSSIVNVRQQDMDLSTYIGQIA 120
Query: 67 NLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLM-----KLRPEYKAARSNLMNRDLS 121
+L +++ ++ P+ + DV ++++ D+F M LRP+ + R ++
Sbjct: 121 SLKEEFLTVM----PLST--DVGD--QRTQIDKFFMVLTLIGLRPDLETVRDQILGSSSV 172
Query: 122 PSLDVCFKELLREE 135
PSLD F LL +
Sbjct: 173 PSLDDVFARLLLSQ 186
>gi|5306241|gb|AAD41974.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1100
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 72/183 (39%), Gaps = 19/183 (10%)
Query: 22 AKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLSGIQNLWAKYVDMIYVQVP 81
A D+W L +N N + ++L EI QG LS+ Y + ++ LW +
Sbjct: 94 ASDIWRDLNSRFNMTNLPRTYNLTQEIQDLRQGTLSLSEYYTRLKTLWDQLDST------ 147
Query: 82 IESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRDLSPSLDVCFKELLREEQRLATQ 141
E L D +++K +FL L Y R ++ + + PSL E + Q
Sbjct: 148 -EELDDPCTRQKRAKIVKFLAGLNESYAIIRRQIIAKKILPSL--------AEVYHIVDQ 198
Query: 142 TILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCAKKFCNYCKKPGHII 201
QQ N +A AA S+ + Y N + C++C + GHI
Sbjct: 199 DNSQQG--FSNVVARPAAFQVSEVTITNSID--PTIYYVQNGPNKGRSMCSFCNRVGHIA 254
Query: 202 KEC 204
+ C
Sbjct: 255 ERC 257
>gi|147797786|emb|CAN76340.1| hypothetical protein VITISV_026819 [Vitis vinifera]
Length = 598
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 83/201 (41%), Gaps = 26/201 (12%)
Query: 21 TAKDMWEYLKKVY-NQDNTAKCFHLEYEIARYSQGDLSIQNYLSGIQNLWAKYVDMIYVQ 79
TAKD+W+ +++ Y N +N ++ F ++ + + QGD Y + + LW +D+ +
Sbjct: 30 TAKDVWDEIRETYSNAENASQIFEIKTRLWQMKQGDREFTEYYTEMLGLWQD-LDL-SCE 87
Query: 80 VPIESLAD---VQGVHEQSKRDQFLMKLRPEYKAARSNLMNRDLSPSLDVCFKELLREEQ 136
E D + E + +FL L E RS +++R PS+ F ++ +EE
Sbjct: 88 EEWECTGDNVRFKKKMENKRVFEFLAGLNRELDDVRSRVLSRRSLPSIREVFSKVRQEES 147
Query: 137 RL---------ATQTILQQNKMHDN----AIAYAAAHGKSKGRDMRQVQCFSCKEYRHII 183
R + L + H +A H S G + S ++ +
Sbjct: 148 RRRVMLDLSFGPEGSALLTHGPHGPHGPLTVARRGPHAGSSGPHPARSSGPSPRQSK--- 204
Query: 184 VNCAKKFCNYCKKPGHIIKEC 204
+ +C YCKK GH C
Sbjct: 205 ----RTYCEYCKKLGHTKDTC 221
>gi|147769841|emb|CAN63383.1| hypothetical protein VITISV_017566 [Vitis vinifera]
Length = 752
Score = 50.4 bits (119), Expect = 6e-04, Method: Composition-based stats.
Identities = 19/30 (63%), Positives = 21/30 (70%)
Query: 185 NCAKKFCNYCKKPGHIIKECPTRPQNCQAS 214
NC KKFCNYCKK GHII CP R + Q +
Sbjct: 123 NCPKKFCNYCKKQGHIISACPIRLERKQGT 152
Score = 46.2 bits (108), Expect = 0.009, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 26/40 (65%)
Query: 58 IQNYLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKR 97
++N SG Q LW Y D++Y VP+E+L+ +Q VH K+
Sbjct: 88 LRNIFSGFQTLWVDYSDIVYANVPVEALSAIQTVHNCPKK 127
>gi|147819437|emb|CAN64502.1| hypothetical protein VITISV_020342 [Vitis vinifera]
Length = 660
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 85/206 (41%), Gaps = 34/206 (16%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
++W+M S+ + + +L + A D+WE LK Y +++ + F LE ++ SQ S+
Sbjct: 98 LSWLMNSIAKEIYGSLLYFTNAFDIWEELKIRYLRNDGPRVFSLEKSLSSISQNSKSVTE 157
Query: 61 YLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRDL 120
Y S + LW +Y+ PI + S R Q L++ S L
Sbjct: 158 YFSEFKALWDEYISY----RPISNCRCGNFNRCSSIRSQLLLQ---------SPL----- 199
Query: 121 SPSLDVCFKELLREE-QRLATQTI-LQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKE 178
PS+ F LL+EE QR T + + + A + S R ++Q F
Sbjct: 200 -PSMSRVFSLLLQEESQRSLTNAVGISIDSQAMVAEQSSRTVSTSNTRFIKQKGMFDA-- 256
Query: 179 YRHIIVNCAKKFCNYCKKPGHIIKEC 204
C++C GH++ +C
Sbjct: 257 -----------ICSHCGYSGHLVDKC 271
>gi|147766660|emb|CAN67322.1| hypothetical protein VITISV_004158 [Vitis vinifera]
Length = 1171
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 73/176 (41%), Gaps = 43/176 (24%)
Query: 39 AKCFHLEYEIARYSQGDLSIQNYLSGIQNLW---AKYVDMIYVQVPIESLADVQGVHEQS 95
A ++ EIA + Q LSI Y + +++LW A Y D A +Q
Sbjct: 130 ATAHEIQREIAYHRQEQLSISVYYTKLKSLWDELASYND-----------ASSGAQQDQQ 178
Query: 96 KRDQFLMKLRPEYKAARSNLMNRDLSPSLDVCFKELLREE-QRLATQT------------ 142
+ QFLM L Y A R ++ + PS+ + + +EE QRL + T
Sbjct: 179 RLMQFLMGLNKSYSAIRGQILLMNPLPSVRQAYSSVCQEEKQRLLSATHTAAESNSSLAM 238
Query: 143 ILQQNKMHDNAIAYAAA------------HGKSKGRDMRQVQCFSCKEYRHIIVNC 186
++ N+M +N++ A + G S+GR QC C E RH + C
Sbjct: 239 AVRSNQMKNNSVGNARSDRSDRLYSDKRRSGSSRGRP----QCTYCGEMRHFVEKC 290
>gi|147795862|emb|CAN74230.1| hypothetical protein VITISV_000585 [Vitis vinifera]
Length = 334
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/207 (19%), Positives = 96/207 (46%), Gaps = 21/207 (10%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
++W++ S+ + ++ +TA ++W L++ ++Q N ++ + ++ +I + QG SI
Sbjct: 88 ISWLLNSIHPDIASSVIYAETASEIWADLRERFSQGNDSRIYQIKRDIVEHRQGQQSISV 147
Query: 61 YLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRD---QFLMKLRPEYKAARSNLMN 117
Y + ++ + Y +V S ++ + E+ +++ QFLM L Y A R ++
Sbjct: 148 YYTKLKAFXDELSS--YHEVLSCSCGGLEKLKERDEKERVMQFLMGLNDSYAAIRGQILL 205
Query: 118 RDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCK 177
P + +L++E+++ ++ NK H +A RD + +
Sbjct: 206 MXPLPDTRXVYSLVLQQEKQVEV-SLNNGNKNHYAMLA---------DRDNKATSAHXVQ 255
Query: 178 EYRHIIVNCAKKFCNYCKKPGHIIKEC 204
+ + + C+YC + H I++C
Sbjct: 256 KQKTPL------HCSYCDRDXHSIEKC 276
>gi|147833373|emb|CAN66243.1| hypothetical protein VITISV_015916 [Vitis vinifera]
Length = 1258
Score = 50.1 bits (118), Expect = 7e-04, Method: Composition-based stats.
Identities = 47/203 (23%), Positives = 81/203 (39%), Gaps = 32/203 (15%)
Query: 7 SVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLSGIQ 66
SVD ++ +L+ YKT W K +Y D + + + I Q D+ + Y+ I
Sbjct: 78 SVDSKILHHLRAYKTCFKFWNQAKGLYTND-IQRLYKVTSSIVNVRQQDMDLSTYIGQIA 136
Query: 67 NLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQF-----LMKLRPEYKAARSNLMNRDLS 121
+ +++ ++ P+ + Q + + D+F L+ LRP+ + R ++
Sbjct: 137 SFKEEFLTVM----PLTTDVGDQRI----QIDKFFMVLTLLGLRPDLETVRDQILGSSSI 188
Query: 122 PSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRH 181
PSLD F LLR +TQT+ N D+++ + Q S
Sbjct: 189 PSLDDVFARLLRIS---STQTLPSDNT-SDSSVLVS--------------QTNSRGGRNG 230
Query: 182 IIVNCAKKFCNYCKKPGHIIKEC 204
+ C YC K GH C
Sbjct: 231 NRGRGQRPHCTYCNKLGHTRDRC 253
>gi|30103001|gb|AAP21414.1| putative polyprotein [Oryza sativa Japonica Group]
gi|108711651|gb|ABF99446.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1393
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 85/188 (45%), Gaps = 16/188 (8%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYN-QDNTAKCFHLEYEIARYSQGDLSIQ 59
++W+M SV S+ ++ + A +W+ L +Y+ + N + ++ Q ++Q
Sbjct: 108 VSWLMTSVAPSIGRMIEAIQNAAVVWKTLSNMYSGEGNVMMMVEAQNKVENLKQEGRTVQ 167
Query: 60 NYLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKR-DQFLMKLRPEYKAARSNLMNR 118
Y S +Q LWA +Q+ E + Q +R FL L E++ R+ + ++
Sbjct: 168 EYASELQQLWADLDHYDPLQLKHEDDIVIGNKWLQRRRVIHFLKGLNKEFEDRRAAMFHQ 227
Query: 119 DLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKE 178
P+++ +++EE RL + + N + AY AA + +C++C +
Sbjct: 228 ATLPTMEEAISAMVQEEMRL--RLMRGTNPIRS---AYIAADNR---------ECYNCGQ 273
Query: 179 YRHIIVNC 186
H+ NC
Sbjct: 274 VGHVSYNC 281
>gi|8843739|dbj|BAA97287.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
Length = 1491
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/211 (21%), Positives = 88/211 (41%), Gaps = 22/211 (10%)
Query: 3 WIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYL 62
WI S++ + + A +W LK+ ++ N + ++ ++A Q + +Y
Sbjct: 96 WIRASIEPKVKSTVTFISDAHQLWSELKQRFSVGNKVRVHQIKAQLAACRQDGQPVIDYY 155
Query: 63 SGIQNLWAKYVDMIYVQVPI--------ESLADVQGVHEQSKRDQFLMKLR-PEYKAARS 113
+ LW ++ IY + + + + E+ K QF++ L + +
Sbjct: 156 GRLCKLWEEF--QIYKPITVCKCGLCTCGATLEPSKEREEEKIHQFVLGLDDSRFGGLSA 213
Query: 114 NLMNRDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQC 173
L+ D PSL + ++REEQRLA+ I +Q + +AI + + D R
Sbjct: 214 TLIAMDPFPSLGEIYSRVVREEQRLASVQIREQQQ---SAIGFLTRQSEVTA-DGRTDSS 269
Query: 174 FSCKEYRHIIVNCAKKFCNYCKKPGHIIKEC 204
R ++ C++C + GH K+C
Sbjct: 270 IIKSRDRSVL-------CSHCGRSGHEKKDC 293
>gi|400598610|gb|EJP66319.1| cellular nucleic acid-binding protein [Beauveria bassiana ARSEF
2860]
Length = 446
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
Query: 169 RQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRP 208
R +CFSC E H +C A C YCK+PGH+ KECPT+P
Sbjct: 33 RDDKCFSCGEEGHRKFDCPNAAPMTCRYCKEPGHMAKECPTKP 75
>gi|4773895|gb|AAD29768.1|AF076243_15 putative polyprotein [Arabidopsis thaliana]
gi|7267198|emb|CAB77909.1| putative polyprotein [Arabidopsis thaliana]
Length = 1017
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 81/187 (43%), Gaps = 32/187 (17%)
Query: 20 KTAKDMWEYLKKVY-NQDNTAKCFHLEYEIARYSQGDLSIQNYLSGIQNLWAKYVDMIYV 78
+TA+++WE L+ VY N N + F ++ I SQ DL + ++LWA+ ++M+
Sbjct: 98 ETARELWETLENVYGNVSNLTRVFEVKKAINNLSQVDLEFTKHFGKFRSLWAE-LEMLRP 156
Query: 79 QVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRDLSPSLDVCFKELLREEQRL 138
++ + + EQ K L+ L P + +L+ D PSL+ ++ +E+ L
Sbjct: 157 STVDPAILNER--KEQEKVFGLLLTLNPAFNDLIKHLLRADKLPSLENVCSQVQKEQGSL 214
Query: 139 ATQTILQQNKMHDNAIAYAAAH-GKSKGRDMRQVQCFSCKEYRHIIVNCAKKFCNYCKKP 197
+ AH G KG E R + V C++CKK
Sbjct: 215 G---------LFSGKGELITAHKGIYKG------------EERKVWV------CDHCKKK 247
Query: 198 GHIIKEC 204
GH+ +C
Sbjct: 248 GHMKDKC 254
>gi|4586028|gb|AAD25646.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1461
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/224 (21%), Positives = 88/224 (39%), Gaps = 15/224 (6%)
Query: 2 TWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNY 61
+W++ SV + ++ A D+W L +N N + ++L EI QG +S+ Y
Sbjct: 134 SWLLNSVSPQIYRSILRLNDATDIWRDLFDRFNLTNLPRTYNLTQEIQDLRQGTMSLSEY 193
Query: 62 LSGIQNLWAKYVDMIYVQVPIESLADVQGVH--EQSKRDQFLMKLRPEYKAARSNLMNRD 119
+ ++ LW + + P V+ E++K +FL L Y R ++ +
Sbjct: 194 YTLLKTLWDQLDSTEALDDPCTCGKAVRLYQKAEKAKIMKFLAGLNESYAIVRRQIIAKK 253
Query: 120 LSPSLDVCFKELLREEQR------LATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQC 173
PSL + L ++ + +A Q +++ + I G + + C
Sbjct: 254 ALPSLAEVYHILDQDNSQKGFFNVVAPPAAFQVSEVSHSPITSPEIMYVQSGPNKGRPTC 313
Query: 174 FSCKEYRHIIVNCAKKFCNYCKKPGHIIK----ECPTRPQNCQA 213
C HI C KK + PG K + P +PQ A
Sbjct: 314 SFCNRVGHIAERCYKK---HGFPPGFTPKGKSSDKPPKPQAVAA 354
>gi|147865368|emb|CAN81940.1| hypothetical protein VITISV_007358 [Vitis vinifera]
Length = 772
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 82/203 (40%), Gaps = 32/203 (15%)
Query: 7 SVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLSGIQ 66
SVD ++ +L+ Y+T W K +Y D + + + I Q D+ + Y+ I
Sbjct: 62 SVDPKILHHLRAYETCFKFWNQAKGLYTND-IQRLYKVASSIVNVRQQDMDLSTYIGQIA 120
Query: 67 NLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLM-----KLRPEYKAARSNLMNRDLS 121
+L +++ ++ P+ + Q + + D+F M LRP+ + R+ ++
Sbjct: 121 SLKEEFLTVM----PLTTDVGDQRI----QIDKFFMVLTLIGLRPDLETVRNQILGSSSV 172
Query: 122 PSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRH 181
PSLD F LLR +TQT+ N D+++ + Q S
Sbjct: 173 PSLDDVFARLLRIS---STQTLPSDNT-SDSSVLVS--------------QTNSRGGRSG 214
Query: 182 IIVNCAKKFCNYCKKPGHIIKEC 204
+ C YC K GH C
Sbjct: 215 NRGRGQRPHCTYCNKLGHTRDRC 237
>gi|147816137|emb|CAN62065.1| hypothetical protein VITISV_030911 [Vitis vinifera]
Length = 1113
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 6/134 (4%)
Query: 3 WIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYL 62
WI+ SV + + +L TA +W L+ + N F L+ + QG L I Y
Sbjct: 937 WIINSVSKDIANSLMYITTAVGIWTNLRNHFRHSNAPXVFQLKKHLITLQQGALDINTYY 996
Query: 63 SGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRD---QFLMKLRPEYKAARSN-LMNR 118
+ + LW + + + +P D+Q + E +++ QFLM L Y R LM
Sbjct: 997 TRFKVLWEELKN--FQPLPAFHCGDLQALLEYQQQENVIQFLMGLNDSYAQTRGQILMME 1054
Query: 119 DLSPSLDVCFKELL 132
L P V + +L
Sbjct: 1055 PLPPLSKVLLRLML 1068
>gi|147787257|emb|CAN60333.1| hypothetical protein VITISV_033283 [Vitis vinifera]
Length = 130
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 3 WIMGSVDQSLVLNLKPYKTAKDMWEYLKKVY-NQDNTAKCFHLEYEIARYSQGDLSIQNY 61
W++ S+D SLV+N Y TAK +W+ Y + +T++ + L ++R Q SI+ Y
Sbjct: 39 WLINSMDHSLVVNFXXYPTAKQVWDSAATTYFDGTDTSQVYELRCHVSRMKQAGGSIEKY 98
Query: 62 LSGIQNLWAKYVDMIYVQVPIESLADVQGVH 92
+ + LW + +D + P+ D+Q H
Sbjct: 99 YNNLHGLWQE-IDFHRLN-PMACAIDIQNYH 127
>gi|147771575|emb|CAN67009.1| hypothetical protein VITISV_004754 [Vitis vinifera]
Length = 1237
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 60/138 (43%), Gaps = 23/138 (16%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVY-NQDNTAKCFHLEYEIARYSQGDLSIQ 59
M+W++ S++ + N + AKD+W+ K+ Y + +NT++ F +E + + QG+ S+
Sbjct: 88 MSWLINSMNNDIGENFLLFGXAKDIWDAAKETYSSSENTSELFQVESALHDFRQGEQSVT 147
Query: 60 NYLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRD 119
Y + + + + EQ + +F + L E R +
Sbjct: 148 QYYNTL----------------------TRQIVEQKRLFKFFLGLNRELDDVRGRIXGIK 185
Query: 120 LSPSLDVCFKELLREEQR 137
PSL F E+ EE R
Sbjct: 186 PLPSLREAFSEVRXEESR 203
>gi|356553925|ref|XP_003545301.1| PREDICTED: uncharacterized protein LOC100820591 [Glycine max]
Length = 1057
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/189 (21%), Positives = 80/189 (42%), Gaps = 13/189 (6%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
++W+ SV + ++ ++ TAK++WE LK +++ N + F L+ ++ QG+
Sbjct: 38 ISWLYNSVFKDIISSILFANTAKEIWEDLKTRFSRKNGPRIFQLKRQLMSLQQGNDDAST 97
Query: 61 YLSGIQNLWAKYVDM-IYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRD 119
Y + ++++W + + L +Q E FLM L + R ++ D
Sbjct: 98 YYTKLKSVWEELSGYKPTFRCKCGGLQTLQDYIESEYVMSFLMGLNDSFAQVRGQILLSD 157
Query: 120 LSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEY 179
P + F +++EE Q ++ N I Y ++ +K + QC C
Sbjct: 158 PLPPIGNVFSLVIQEE---------AQREIVVNHIPYLNSNTMAKK---ERPQCAHCNLL 205
Query: 180 RHIIVNCAK 188
H C K
Sbjct: 206 GHTKDKCYK 214
>gi|147862365|emb|CAN81916.1| hypothetical protein VITISV_038548 [Vitis vinifera]
Length = 1202
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 70/146 (47%), Gaps = 17/146 (11%)
Query: 7 SVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLSGIQ 66
SVD ++ +L+ YKT W K +Y D + + + I Q D+++ +Y+ I
Sbjct: 78 SVDPKILHHLRAYKTCFKFWNQAKGLYTND-IQRLYKVTSSIVNVKQQDMNLSSYIDQIA 136
Query: 67 NLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLM-----KLRPEYKAARSNLMNRDLS 121
+L +++ ++ P+ + DV ++ + D+F M LRP+ + R ++
Sbjct: 137 SLKEEFLTVM----PLTT--DVGD--QRMQIDKFFMVLTLIGLRPDLETVRDQILGSSSV 188
Query: 122 PSLDVCFKELLREEQRLATQTILQQN 147
PSLD F LLR +TQT+ N
Sbjct: 189 PSLDDVFARLLRIS---STQTLPFDN 211
>gi|147811049|emb|CAN67925.1| hypothetical protein VITISV_021168 [Vitis vinifera]
Length = 1354
Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 47/198 (23%), Positives = 78/198 (39%), Gaps = 34/198 (17%)
Query: 7 SVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLSGIQ 66
SVD ++L+L+ YKT W K +Y D + + + I SQ DL + Y+ I
Sbjct: 78 SVDPRILLHLQAYKTCFKFWTQAKGLYTND-IQRLYKVASAIVHLSQQDLDLSTYIGQIA 136
Query: 67 NLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRDLSPSLDV 126
+L +++ ++ P+ Q Q++ D+F M +R + + S PSLD
Sbjct: 137 SLKEQFLTVM----PLTPDVGAQ----QTQLDKFFMPIRDQILGSSS-------VPSLDD 181
Query: 127 CFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNC 186
F LLR L++ L D+++ + + R
Sbjct: 182 VFARLLR----LSSTQTLPSASASDSSVLVSHTTSRGGRSGTRGRG-------------- 223
Query: 187 AKKFCNYCKKPGHIIKEC 204
+ C YC K GH C
Sbjct: 224 QRPHCTYCNKLGHTRDRC 241
>gi|395146527|gb|AFN53681.1| gag protein [Linum usitatissimum]
Length = 375
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 69/146 (47%), Gaps = 14/146 (9%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
++WI+ SV + ++ K+A+ W L+ ++Q + K L+ ++ QG S+
Sbjct: 107 LSWILRSVSPIIAKSILYSKSARSAWVVLRSRFSQGDAFKIADLQEKVFALKQGTRSVTE 166
Query: 61 YLSGIQNLWAKYVDMIYVQVPIES----------LADVQGVHEQSKRDQFLMKLRPEYKA 110
+ + + L+ + + P+ L+ ++ H+Q + +FL L +
Sbjct: 167 FFTELITLYDELSNF----RPLPDCACPPPCTCILSKIRTYHDQDRVIRFLRGLTDGFAG 222
Query: 111 ARSNLMNRDLSPSLDVCFKELLREEQ 136
ARS +M D PSLD F ++++E+
Sbjct: 223 ARSQVMLLDPLPSLDRVFAMMVQQER 248
>gi|147819470|emb|CAN61102.1| hypothetical protein VITISV_024945 [Vitis vinifera]
Length = 249
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 91/225 (40%), Gaps = 39/225 (17%)
Query: 7 SVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLSGIQ 66
SVD ++L+L YKT W +K +Y D + + + I Q D+ + Y+ I
Sbjct: 38 SVDPKILLHLWAYKTCFKFWNQVKGLYTND-IQRLYKVASSIVNVRQQDMDLSTYIGQI- 95
Query: 67 NLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKL-----RPEYKAARSNLMNRDLS 121
A + + + +P+ + DV ++++ D+F M L RP + ++
Sbjct: 96 ---ASFKEEFLIVMPLTT--DVGD--QRTQIDKFFMVLXLISFRPNLETISDQIIGSSSV 148
Query: 122 PSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRH 181
PSLD F LLR +TQT+ N D+++ + Q S
Sbjct: 149 PSLDDVFARLLRIS---STQTLPSDNT-SDSSVLVS--------------QTNSRGGRSG 190
Query: 182 IIVNCAKKFCNYCKKPGHIIKEC---PTRPQN----CQASQAVVA 219
+ C YC K GH C RP + Q+S++ VA
Sbjct: 191 NRGRGQRPHCTYCNKFGHTRDRCYQLHGRPSHTAHVAQSSESSVA 235
>gi|147820205|emb|CAN73586.1| hypothetical protein VITISV_033961 [Vitis vinifera]
Length = 230
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 81/202 (40%), Gaps = 32/202 (15%)
Query: 8 VDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLSGIQN 67
VD ++ +L+ YKT W K +Y D + + + I Q D+ + Y+ I +
Sbjct: 39 VDPKILHHLRVYKTCFKFWTQAKGLYTND-IQQFYKAVFYIVHVRQQDMDLFTYIGRIAS 97
Query: 68 LWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLM-----KLRPEYKAARSNLMNRDLSP 122
L +++ ++ P + A+ Q Q + D+F M LRP+ ++ R ++ P
Sbjct: 98 LKEEFLTLM----PFTNGAEAQ----QIQTDKFFMVLTLIGLRPDLQSVRDQILASPSVP 149
Query: 123 SLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHI 182
SLD F LLR L++ L + D+++ + Q S
Sbjct: 150 SLDDVFTHLLR----LSSTQTLSTDGPSDSSVLAS--------------QTNSRGGRSGN 191
Query: 183 IVNCAKKFCNYCKKPGHIIKEC 204
+ C YC K GH C
Sbjct: 192 RGRGQRPQCTYCNKLGHTRDRC 213
>gi|346318384|gb|EGX87987.1| zinc knuckle transcription factor (CnjB), putative [Cordyceps
militaris CM01]
Length = 487
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Query: 172 QCFSCKEYRHIIVNCAKK---FCNYCKKPGHIIKECPTRP 208
+CFSC E H C CNYCK+PGH+ KECPT+P
Sbjct: 64 KCFSCGEEGHRKFECPNAPQMTCNYCKEPGHMAKECPTKP 103
>gi|126542369|gb|ABO16616.1| gag protein [Feline immunodeficiency virus]
gi|134284831|gb|ABO69517.1| gag [Feline immunodeficiency virus]
Length = 462
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 74/165 (44%), Gaps = 17/165 (10%)
Query: 47 EIARYSQGDLSIQNYLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRP 106
E+ + G N G + +++K+VD ++ Q+ ES Q V + K + P
Sbjct: 265 ELRKIRAGAPRAVNVKQGPKEIYSKFVDRLFKQIEAESAP--QDVKQYLKDSLSISNANP 322
Query: 107 EYKAARSNLMNRDLSPSLDVCFKELLREEQRLATQTILQQNKMHD--NAIAYAAAHGKSK 164
E K A S+L D ++ +R Q + + T + N + + K+K
Sbjct: 323 ECKRAMSHLRPEDK-------LEDKIRACQDIGS-TAYKMNMLAQALQQVRVQQVQVKTK 374
Query: 165 GRDMRQ----VQCFSCKEYRHIIVNC-AKKFCNYCKKPGHIIKEC 204
GR ++ ++CF+C + H+ NC A K CN C K GHI +C
Sbjct: 375 GRKLQNRGGPLKCFNCGKIGHLARNCRAPKRCNKCGKSGHISTDC 419
>gi|147846215|emb|CAN79489.1| hypothetical protein VITISV_033370 [Vitis vinifera]
Length = 747
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 70/140 (50%), Gaps = 10/140 (7%)
Query: 21 TAKDMWEYLKKVYNQDN-TAKCFHLEYEIARYSQGDLSIQNYLSGIQNLWAKYVDMIYVQ 79
TAK++W + + Y++ TA+ + L+ +I QG SI Y + +Q+LW + +++
Sbjct: 14 TAKEIWYAISQTYSKIGITAQIYELKCQIHATKQGSWSITKYYNKLQSLWLELDHYQHIE 73
Query: 80 VPI-ESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRDLSPSLDVCFKELLREEQRL 138
+ + E ++ + EQ + +FL L PE R + ++ PS+ + ++ EE
Sbjct: 74 MVVAEDTTRLKKIMEQERVFEFLAGLNPELDQVRVQKLGKEPLPSIREVYAYVIGEES-- 131
Query: 139 ATQTILQQNKMHDNAIAYAA 158
++ + ++A+A A
Sbjct: 132 ------HRDTLENSALATAG 145
>gi|158578602|gb|ABW74573.1| putative pol polyprotein [Boechera divaricarpa]
Length = 937
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/208 (20%), Positives = 84/208 (40%), Gaps = 22/208 (10%)
Query: 2 TWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNY 61
+W++ SV + ++ A D+W L ++ N + F+L EI QG +S+ +Y
Sbjct: 120 SWLLNSVSPHIYRSILRLIDAADIWRDLSSRFHMSNLPRIFNLAKEIQDLRQGSMSLLDY 179
Query: 62 LSGIQNLWAKYVDMIYVQVPIES-----LADVQGVHEQSKRDQFLMKLRPEYKAARSNLM 116
+ ++ LW ++ + P E +Q E++K +FL L Y R ++
Sbjct: 180 YTTLKTLWD---NLESSEEPGEPCTCGRATQLQLKAERAKIVKFLASLNESYDIIRRQII 236
Query: 117 NRDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSC 176
+ PSL + L + + Q +N + KS+ + + C+
Sbjct: 237 MMKVLPSLTEVYNILDQND---------SQRGFSNNTPPTSFQVSKSEDPEDQAAICYVT 287
Query: 177 KEYRHIIVNCAKKFCNYCKKPGHIIKEC 204
N + ++C + GHI + C
Sbjct: 288 SG-----ANKGRPIYSFCNRVGHIAERC 310
>gi|125570667|gb|EAZ12182.1| hypothetical protein OsJ_02065 [Oryza sativa Japonica Group]
Length = 404
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 64/136 (47%), Gaps = 3/136 (2%)
Query: 4 IMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLS 63
++GS++ + L++ +++ MW L++ Y N A + E Q D ++ +
Sbjct: 184 LVGSMEVDISLDIAGLASSELMWTRLRQQYEPRNDAMFLAVVNEAQSLRQLDATVDEFFR 243
Query: 64 GIQNLWAKYVDMIYVQV-PIESLADVQGVHEQSKRD-QFLMKLRPEYKAARSNLMNRDLS 121
+ +W + +D+ V + Q V ++ R +FL LRPE++ R+ L+ R
Sbjct: 244 KMSTVW-RQMDLQGADVCRTCTCCQRQRVQTETTRLYEFLSHLRPEFEPVRAQLLARRPR 302
Query: 122 PSLDVCFKELLREEQR 137
PSL EL EE R
Sbjct: 303 PSLLETLPELRAEETR 318
>gi|12321355|gb|AAG50751.1|AC079733_19 polyprotein, putative [Arabidopsis thaliana]
Length = 1468
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/222 (20%), Positives = 97/222 (43%), Gaps = 33/222 (14%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
++W+ ++D L+ N+ A+D+WE ++K ++ N K ++ ++A Q ++++
Sbjct: 88 VSWMKMTIDSELLTNISHRDVARDLWEQIRKRFSVSNGPKNQKMKADLATCKQEGMTVEG 147
Query: 61 YLSGIQNLWAKYVDMIYVQVPI------ESLADVQGVHEQSKRD----QFLMKL-RPEYK 109
Y + +W D I P+ + ++ E+ + D Q+L L ++
Sbjct: 148 YYGKLNKIW----DNINSYRPLRICKCGRCICNLGTDQEKYREDDMVHQYLYGLNETKFH 203
Query: 110 AARSNLMNRDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMR 169
RS+L +R P L+ + + +EE + ++ N+ + A+A + + R
Sbjct: 204 TIRSSLTSRVPLPGLEEVYNIVRQEEDMVNNRS---SNEERTDVTAFAV---QMRPRSEV 257
Query: 170 QVQCFSCKEYRHIIVNCAKKFCNYCKKPGHIIKECPTRPQNC 211
+ F+ E KK C +C + GH P+NC
Sbjct: 258 ISEKFANSEKLQ-----NKKLCTHCNRGGH-------SPENC 287
>gi|338729303|ref|XP_001505024.3| PREDICTED: cellular nucleic acid-binding protein-like [Equus
caballus]
Length = 170
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 29/44 (65%), Gaps = 3/44 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNCAKK---FCNYCKKPGHIIKECPT 206
+D QV+C+ C E H+ +NC+KK C C KPGH+ +ECPT
Sbjct: 123 KDCTQVKCYRCGETGHVAINCSKKNKVNCYRCGKPGHLARECPT 166
>gi|147855867|emb|CAN80753.1| hypothetical protein VITISV_003323 [Vitis vinifera]
Length = 1304
Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 48/203 (23%), Positives = 80/203 (39%), Gaps = 43/203 (21%)
Query: 7 SVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLSGIQ 66
SVD ++L+L+ YKT W K +Y D I R + DL + Y+ I
Sbjct: 78 SVDPRILLHLQAYKTCFKFWTQAKGLYTND-----------IQRLYK-DLDLSTYIGQIA 125
Query: 67 NLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLM-----KLRPEYKAARSNLMNRDLS 121
+L +++ ++ P+ Q Q++ D+F M LRP+ ++ R ++
Sbjct: 126 SLKEEFLTVM----PLTPDVGAQ----QTQLDKFFMVLTLIGLRPDLESIRDQILGSSSV 177
Query: 122 PSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRH 181
PSLD F LLR +++ L + D+++ + Q S
Sbjct: 178 PSLDDVFARLLR----ISSTQTLPSDSASDSSVLVS--------------QTTSRGGRSG 219
Query: 182 IIVNCAKKFCNYCKKPGHIIKEC 204
+ C YC K GH C
Sbjct: 220 TRGRGQRPHCTYCNKLGHTRDRC 242
>gi|147765480|emb|CAN66955.1| hypothetical protein VITISV_020634 [Vitis vinifera]
Length = 470
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 83/202 (41%), Gaps = 32/202 (15%)
Query: 8 VDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLSGIQN 67
VD ++L+L+ YKT W K +Y D + + + I Q D+++ Y+ I +
Sbjct: 62 VDPKILLHLQAYKTCFKFWNQAKGLYMND-IQRLYKVASSIVNVRQQDMNLSTYIGLIAS 120
Query: 68 LWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLM-----KLRPEYKAARSNLMNRDLSP 122
L +++ ++ P+ + DV ++++ D+F M L P+ + R ++ P
Sbjct: 121 LKEEFLTVM----PLST--DVGD--QRTQIDKFFMVLTLIGLLPDLETIRDQILGSSSVP 172
Query: 123 SLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHI 182
SLD F LL +++ IL + D+++ + Q S
Sbjct: 173 SLDDVFARLLH----ISSTQILPSDNTSDSSVLVS--------------QTNSRGGRSGN 214
Query: 183 IVNCAKKFCNYCKKPGHIIKEC 204
+ C YC K GH C
Sbjct: 215 RGRGQRPHCTYCNKLGHTRDRC 236
>gi|147818951|emb|CAN67123.1| hypothetical protein VITISV_040164 [Vitis vinifera]
Length = 982
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 80/206 (38%), Gaps = 38/206 (18%)
Query: 7 SVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLSGIQ 66
SVD ++L+ + YKT W K +Y D + + + I Q D+ + Y+ I
Sbjct: 43 SVDPKILLHFRAYKTCFKFWNQAKGLYTND-IQRLYKVASSIVNVKQQDMDLSTYIGQIA 101
Query: 67 NLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQF-----LMKLRPEYKAARSNLMNRDLS 121
+L +++ ++ P+ + Q H D+F L+ R + + R ++
Sbjct: 102 SLKEEFLTVM----PLTTDVGDQRTHI----DKFFIVLMLIGFRSDLETVRDQILGSSSV 153
Query: 122 PSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAH---GKSKGRDMRQVQCFSCKE 178
PSLD LR +TQT L + D+ + + + G+S R Q
Sbjct: 154 PSLDDVLARFLRIS---STQT-LSFDNTSDSFVLVSQTNSRGGRSGNRGKGQ-------- 201
Query: 179 YRHIIVNCAKKFCNYCKKPGHIIKEC 204
+ C YC K GH C
Sbjct: 202 ---------RPHCTYCNKLGHTRDRC 218
>gi|9758772|dbj|BAB09070.1| unnamed protein product [Arabidopsis thaliana]
gi|26450382|dbj|BAC42306.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|28973203|gb|AAO63926.1| unknown protein [Arabidopsis thaliana]
Length = 357
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/200 (22%), Positives = 84/200 (42%), Gaps = 19/200 (9%)
Query: 2 TWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNY 61
+WI+ SV + + ++ + A ++W+ L ++ N + + L +I QG++S+ +Y
Sbjct: 135 SWILNSVTKQIYKSILRFNDAAEIWKDLDTRFHITNLPRSYQLTQQIWSLQQGNMSLSDY 194
Query: 62 LSGIQNLWAKYVDMIYVQV--PIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRD 119
+ ++ LW V + + V+E SK +FL L Y RS ++ +
Sbjct: 195 YTTLKTLWDDLDGASCVNTCRNCKCCSATASVNEHSKIVKFLAGLNDFYSTIRSQIIMKK 254
Query: 120 LSPSLDVCFKELLRE--EQRLATQ---------TILQQNKMHDNAIAYAAAHGKSKGRDM 168
P L + L ++ ++ + T +IL +++ NA + K K
Sbjct: 255 TIPDLAEIYNLLDQDHSQRNIVTNPTNASAFNVSILSNDQIAVNATRSFQPNSKPK---- 310
Query: 169 RQVQCFSCKEYRHIIVNCAK 188
VQC C H C K
Sbjct: 311 --VQCSHCGYTGHTADTCYK 328
>gi|147785770|emb|CAN77632.1| hypothetical protein VITISV_041497 [Vitis vinifera]
Length = 521
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 77/203 (37%), Gaps = 32/203 (15%)
Query: 7 SVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLSGIQ 66
SVD ++L+L+ YKT W K +Y D + + + I SQ DL + Y+ I
Sbjct: 78 SVDPRILLHLQAYKTCCKFWTQAKGLYTND-IQRLYKVASAIVHLSQQDLDLSTYIGQIA 136
Query: 67 NLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLM-----KLRPEYKAARSNLMNRDLS 121
+L +++ ++ + DV +Q++ D+F M LRP+ + R ++
Sbjct: 137 SLKEQFLTVMPLT------PDVGA--QQTQLDKFFMVLTLIGLRPDLEPIRDQILGSSSV 188
Query: 122 PSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRH 181
PSL LLR +TQT+ + Q S
Sbjct: 189 PSLGDVLARLLRIS---STQTL---------------PSDSVSDSSVLVSQTTSRGGRSG 230
Query: 182 IIVNCAKKFCNYCKKPGHIIKEC 204
+ C YC K GH C
Sbjct: 231 TRGRGQRPHCTYCNKLGHTRDRC 253
>gi|147819165|emb|CAN62636.1| hypothetical protein VITISV_006313 [Vitis vinifera]
Length = 1246
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 68/141 (48%), Gaps = 5/141 (3%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQ-DNTAKCFHLEYEIARYSQGDLSIQ 59
+ W++ S++ ++ + TAKD+WE ++ +Y+ +N+++ F L+ ++ + QGD +
Sbjct: 71 IAWLINSMEPAIGKSHLFLPTAKDVWEXVRDMYSDLENSSQIFXLKSKLWQSRQGDREVT 130
Query: 60 NYLSGIQNLWAKYVDMIYV---QVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLM 116
Y + + LW + +D+ Y P +S+ + FL L R ++
Sbjct: 131 TYYNQMVTLWQE-LDLCYEDEWDCPNDSVRHKKREENDXVYYVFLAGLNHNLDEVRGXIL 189
Query: 117 NRDLSPSLDVCFKELLREEQR 137
R PS+ F + REE R
Sbjct: 190 GRKPLPSIREVFSXVRREEAR 210
>gi|147833118|emb|CAN64225.1| hypothetical protein VITISV_016222 [Vitis vinifera]
Length = 987
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/207 (18%), Positives = 92/207 (44%), Gaps = 18/207 (8%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
++W+ SV + + ++ ++T ++W L + ++Q + + F ++ +I ++QG +
Sbjct: 91 ISWLSNSVCKEIAESILYHETTIEIWNDLYERFHQGSGPRIFEIKQKILAHTQGLAYVNT 150
Query: 61 YLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRD---QFLMKLRPEYKAARSNLMN 117
Y + ++LW + + + +P+ + ++ E +R+ QFL+ L + R+ ++
Sbjct: 151 YYTRQKSLWDELRE--FKAIPVCNCGGMRVYMEDQQRESVMQFLLGLNESFAPIRAQILL 208
Query: 118 RDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCK 177
+P L+ F +++EE+ Q++ N+ A+ A R +
Sbjct: 209 MKPTPPLNKVFSLVVQEER--------QRSLTISNSPAFTAPVSSRFQAASRASSPTNSS 260
Query: 178 EYRHIIVNCAKKFCNYCKKPGHIIKEC 204
R + C +C GH + C
Sbjct: 261 RSRK-----DRPLCTHCNILGHTVDRC 282
>gi|147858888|emb|CAN80841.1| hypothetical protein VITISV_002785 [Vitis vinifera]
Length = 1184
Score = 48.1 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 48/204 (23%), Positives = 84/204 (41%), Gaps = 36/204 (17%)
Query: 7 SVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKC-FHLEYEIARYSQGDLSIQNYLSGI 65
SVD ++L+L+ YKT W K++Y D +C + + + I Q D+ + Y I
Sbjct: 65 SVDPKILLHLRAYKTCFKFWNQTKRLYTND--IQCLYKVAFSIVNVRQQDMDLSTYFGQI 122
Query: 66 QNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLM-----KLRPEYKAARSNLMNRDL 120
+L + + ++ + + +Q++ D+F M LRP+ + + +++
Sbjct: 123 VSLKEELLTVMPLTTDVGD--------QQTQIDKFFMVLMLIGLRPDLETIHNQILDSSS 174
Query: 121 SPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYR 180
SLD F LLR +TQT+ DN ++ ++ R R C Y
Sbjct: 175 ISSLDDVFARLLRIS---STQTL-----SSDNTSDFSLLVSQTNSRGGRSNNRGQCPHY- 225
Query: 181 HIIVNCAKKFCNYCKKPGHIIKEC 204
YC K GH +C
Sbjct: 226 -----------TYCNKFGHTCDQC 238
>gi|2642431|gb|AAB87099.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1496
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/204 (22%), Positives = 93/204 (45%), Gaps = 22/204 (10%)
Query: 3 WIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYL 62
WI S+D ++ + A +WE L++ ++ N + L+ EIA +Q + Y
Sbjct: 90 WIRTSIDPTIRSTVGFVSEASQLWENLRRRFSVGNGVRKTLLKDEIAACTQDGQPVLAYY 149
Query: 63 SGIQNLWAKYVDMIYV-QVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRDLS 121
+ LW + + + E+ +D++ E + +FL+ L + + RS++ + +
Sbjct: 150 GRLIKLWEELQNYKSGRECKCEAASDIEKEREDDRVHKFLLGLDSRFSSIRSSITDIEPL 209
Query: 122 PSLDVCFKELLREEQRL-ATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYR 180
P L + ++REEQ L A++T ++ + AI ++ VQ + +R
Sbjct: 210 PDLYQVYSRVVREEQNLNASRT---KDVVKTEAIGFS-------------VQSSTTPRFR 253
Query: 181 HIIVNCAKKFCNYCKKPGHIIKEC 204
+ + FC +C + GH + +C
Sbjct: 254 ----DKSTLFCTHCNRKGHEVTQC 273
>gi|449463362|ref|XP_004149403.1| PREDICTED: uncharacterized protein LOC101215551 [Cucumis sativus]
Length = 528
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 79/180 (43%), Gaps = 17/180 (9%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
++WI+ SV + + ++ + + +W LK+ + + NT + F L+ +A Q ++
Sbjct: 37 ISWILNSVSKPISASILFSDSTRAIWIDLKERFQKKNTPRIFQLKRSLATLEQNQDTVCM 96
Query: 61 YLSGIQNLWAKYVDMIYVQVP--IESLADVQGVHEQSKRDQ------FLMKLRPEYKAAR 112
Y + + L +D + P GV E + Q FLM L + AR
Sbjct: 97 YYTKFKTL----IDELNTYRPGCTCGTCSCDGVREMTDFLQMEYLMDFLMGLNENFSQAR 152
Query: 113 SNLMNRDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQ 172
L+ D PS F LL+EE++ + ++ +A+A+ A HG G +Q Q
Sbjct: 153 GQLLLMDPLPSTSRAFSLLLQEEEQRSIGSL----SSTASAMAF-ALHGYPPGYKTKQQQ 207
>gi|147767056|emb|CAN69872.1| hypothetical protein VITISV_032285 [Vitis vinifera]
Length = 843
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 81/175 (46%), Gaps = 7/175 (4%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQ-DNTAKCFHLEYEIARYSQGDLSIQ 59
M+W+ S+ + TAK++WE + Y++ + A+ + L+ I QG LS+
Sbjct: 158 MSWLWNSMQSDISRTCMFLSTAKEIWESVCHTYSKVRDAAQMYELKTRIHNTKQGILSVT 217
Query: 60 NYLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQ---FLMKLRPEYKAARSNLM 116
Y + I++LW + +D Y + ++ D E +R++ FL L E R +
Sbjct: 218 KYYNVIKSLWLE-LDQ-YQNLRMKCNIDATMHQEFIERERVYDFLAGLNVELDQVRVQIF 275
Query: 117 NRDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQV 171
++ PSL+ F ++R E+R + + N M + +A + G R M Q
Sbjct: 276 GKEPLPSLNKAFA-IVRGEERRRNIMLEKGNTMDRSVLAISKPSGNEVLRLMLQT 329
>gi|147769782|emb|CAN65540.1| hypothetical protein VITISV_029946 [Vitis vinifera]
Length = 1240
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/207 (18%), Positives = 92/207 (44%), Gaps = 18/207 (8%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
++W+ SV + + ++ ++T ++W L + ++Q + + F ++ +I ++QG +
Sbjct: 91 ISWLSNSVCKEIAESILYHETTIEIWNDLYERFHQGSGPRIFEIKQKILAHTQGLAYVNT 150
Query: 61 YLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRD---QFLMKLRPEYKAARSNLMN 117
Y + ++LW + + + +P+ + ++ E +R+ QFL+ L + R+ ++
Sbjct: 151 YYTRQKSLWDELRE--FKAIPVCNCGGMRVYMEDQQRESVMQFLLGLNESFAPIRAQILL 208
Query: 118 RDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCK 177
+P L+ F +++EE+ Q++ N+ A+ A R +
Sbjct: 209 MKPTPPLNKVFSLVVQEER--------QRSLTISNSPAFTAPVSSRFQAASRASSPTNSS 260
Query: 178 EYRHIIVNCAKKFCNYCKKPGHIIKEC 204
R + C +C GH + C
Sbjct: 261 RSRK-----DRPLCTHCNILGHTVDRC 282
>gi|125600216|gb|EAZ39792.1| hypothetical protein OsJ_24232 [Oryza sativa Japonica Group]
Length = 695
Score = 47.8 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 35/137 (25%), Positives = 65/137 (47%), Gaps = 17/137 (12%)
Query: 1 MTWIMGSVDQSLVLNLKPYKT-AKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQ 59
++W+ G++ L+ ++ + T A+ +W L+ + + A+ +L E + QGDLS+
Sbjct: 229 LSWMYGTISTDLLESVMTHTTTARLVWRSLEHQFLGNREARALNLNAEFYNFQQGDLSVT 288
Query: 60 NYLSGIQNLWAKYVDMIYVQVPIE----SLADVQGVHEQSKRDQFLMKLR---PEYKAAR 112
+Y + L A D+ V P+ +LA +QG+ E Q +R P + R
Sbjct: 289 DY---CRRLKAMAADLADVGEPVGDRTLTLATIQGLDENFAHLQSAFTMRKPFPSFAEVR 345
Query: 113 SNLM------NRDLSPS 123
S L+ NR +P+
Sbjct: 346 SQLLLDELTKNRSHTPA 362
>gi|147861661|emb|CAN83177.1| hypothetical protein VITISV_042114 [Vitis vinifera]
Length = 1085
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 75/202 (37%), Gaps = 46/202 (22%)
Query: 8 VDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLSGIQN 67
VD ++L+L YKT W +K ++ D + + + I Q D+ + Y+ I +
Sbjct: 63 VDPKILLHLWAYKTCFKFWNQIKGLHTND-IQRLYKVASSIVNVRQQDMDLSTYIGQIAS 121
Query: 68 LWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLM-----KLRPEYKAARSNLMNRDLSP 122
L +++ + D+F M LRP+ + R ++ P
Sbjct: 122 LKEEFLTI----------------------DKFFMVLTLIGLRPDLETVRDQILGSSSVP 159
Query: 123 SLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHI 182
SLD F LLR +TQT+ N D+++ + Q S
Sbjct: 160 SLDDVFARLLRIS---STQTLPSDNT-SDSSVLVS--------------QTSSRGGRSGN 201
Query: 183 IVNCAKKFCNYCKKPGHIIKEC 204
+ +C YC K GH C
Sbjct: 202 RGRGQRPYCTYCNKLGHTRDRC 223
>gi|147853125|emb|CAN78557.1| hypothetical protein VITISV_010019 [Vitis vinifera]
Length = 1348
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 83/199 (41%), Gaps = 30/199 (15%)
Query: 3 WIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYL 62
W++G +D SL+ N + AK +W+ + Y +AR QG S++ Y
Sbjct: 79 WLIGLMDPSLIGNFIQFPMAKQVWDAIATTYFDG-----------MARLRQGSGSLEKYY 127
Query: 63 SGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQ---FLMKLRPEYKAARSNLMNRD 119
+ +Q LW + +D P++ D+Q + + D+ FL L RS+++
Sbjct: 128 NDLQGLW-RDIDFRRPN-PMQCPTDIQYFNNILQEDRVYTFLDGLDDNIDNIRSDVLQLK 185
Query: 120 LSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAA----------AHGKSKGRDMR 169
P+++ + + RE R Q ++ N + + AA + KSKG
Sbjct: 186 PFPTVEQAYAHVRREAVR---QAVMTANDGEEAGPSTAANSLSLNGKFNSISKSKGPS-N 241
Query: 170 QVQCFSCKEYRHIIVNCAK 188
++C C +H C K
Sbjct: 242 DMKCSHCGNSKHTRDTCFK 260
>gi|147822046|emb|CAN65820.1| hypothetical protein VITISV_042324 [Vitis vinifera]
Length = 1262
Score = 47.4 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 47/190 (24%), Positives = 75/190 (39%), Gaps = 26/190 (13%)
Query: 27 EYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLSGIQNLWAKYVDMIYVQVP----- 81
E LK Y + + + F LE ++ SQ SI Y S + LW +Y+ Y +P
Sbjct: 89 EELKIRYLRSDGPRVFSLEKSLSSISQNSKSITEYFSEFKALWDEYIS--YRPIPSCRCG 146
Query: 82 ------IESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRDLSPSLDVCFKELLREE 135
L D+ + +FL+ L Y A RS L+ + PS+ F LL+EE
Sbjct: 147 NLNRCSCNILKDLTDRQQSDYVMKFLVGLHDSYSAIRSQLLLQSPLPSMSRVFSLLLQEE 206
Query: 136 -QRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCAKKFCNYC 194
QR T + +I A + R + K+ + C++C
Sbjct: 207 SQRSLTNAV-------GISIDSQAMVAEQSSRTVSTSNTQFTKQKGK-----SDAICSHC 254
Query: 195 KKPGHIIKEC 204
GH++ +C
Sbjct: 255 GYSGHLVDKC 264
>gi|3779026|gb|AAC67205.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1413
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/211 (21%), Positives = 87/211 (41%), Gaps = 22/211 (10%)
Query: 3 WIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYL 62
WI S++ + + A +W LK+ ++ N ++ ++A Q + +Y
Sbjct: 96 WIRASIEPKVKSTVTFICDAHQLWSELKQRFSVGNKVHVHQIKTQLAACRQDGQPVIDYY 155
Query: 63 SGIQNLWAKYVDMIYVQVPI--------ESLADVQGVHEQSKRDQFLMKLR-PEYKAARS 113
+ LW ++ IY + + + + E+ K QF++ L + +
Sbjct: 156 GRLCKLWEEF--QIYKPITVCKCGLCTCGATLEPSKEREEEKIHQFVLGLDDSRFGGLSA 213
Query: 114 NLMNRDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQC 173
L+ D PSL + ++REEQRLA+ I +Q + +AI + + D R
Sbjct: 214 TLIAMDPFPSLGEIYSRVVREEQRLASVQIREQQQ---SAIGFLTRQSEVTA-DGRTDSS 269
Query: 174 FSCKEYRHIIVNCAKKFCNYCKKPGHIIKEC 204
R ++ C++C + GH K+C
Sbjct: 270 IIKSRDRSVL-------CSHCGRSGHEKKDC 293
>gi|147818439|emb|CAN60732.1| hypothetical protein VITISV_010209 [Vitis vinifera]
Length = 1409
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 74/150 (49%), Gaps = 9/150 (6%)
Query: 3 WIMGSVDQSLVLNLKPYKTAKDMWEYLKKVY-NQDNTAKCFHLEYEIARYSQGDLSIQNY 61
W++ S+D LV N + AK +W+ + Y + +T++ + L+ + R Q SI+
Sbjct: 103 WLINSMDPKLVSNFIXFSXAKAVWDNIAITYFDGTDTSQVYDLKRRVTRLKQEGGSIETX 162
Query: 62 LSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQ---FLMKLRPEYKAARSNLMNR 118
+ +Q LW + +D P+E D+Q + + D+ FL L R++++
Sbjct: 163 YNNLQGLW-REIDFRRPN-PMECDIDIQKYNSILQEDRVYTFLDGLDDRLDKIRADVLQI 220
Query: 119 DLSPSLDVCFKELLREEQRLATQTILQQNK 148
P+++ + ++ RE+ R Q+++ N+
Sbjct: 221 QPFPTVEQAYAQVRREDLR---QSVMMMNE 247
>gi|126542351|gb|ABO16607.1| gag protein [Feline immunodeficiency virus]
gi|134284768|gb|ABO69463.1| gag [Feline immunodeficiency virus]
Length = 462
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 73/165 (44%), Gaps = 17/165 (10%)
Query: 47 EIARYSQGDLSIQNYLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRP 106
E+ + G N G + +++++VD ++ Q+ ES Q V + K + P
Sbjct: 265 ELRKIKAGAPRAVNVKQGPKEIYSEFVDRLFKQIEAESAP--QDVKQYLKDSLSISNANP 322
Query: 107 EYKAARSNLMNRDLSPSLDVCFKELLREEQRLATQTILQQNKMHD--NAIAYAAAHGKSK 164
E K A S+L D ++ +R Q + + T + N + K+K
Sbjct: 323 ECKRAMSHLRPEDK-------LEDKIRACQDIGS-TAYKMNMLAQALQQARVQQVQVKAK 374
Query: 165 GRDMRQ----VQCFSCKEYRHIIVNC-AKKFCNYCKKPGHIIKEC 204
GR ++ ++CF+C + H+ NC A K CN C K GHI +C
Sbjct: 375 GRKLQNRGGPLKCFNCGKVGHMAKNCRAPKRCNKCGKSGHISTDC 419
>gi|147810497|emb|CAN74104.1| hypothetical protein VITISV_008952 [Vitis vinifera]
Length = 1211
Score = 47.4 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 48/199 (24%), Positives = 81/199 (40%), Gaps = 46/199 (23%)
Query: 7 SVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLSGIQ 66
SVD ++ +L+ YKT W K +Y D + + + I Q D+ + Y+ I
Sbjct: 78 SVDPKILHHLRAYKTCFKFWNQAKGLYTND-IQRLYKVASSIVNVRQQDMDLSTYIGQIA 136
Query: 67 NLWAKYVDMIYVQVPIESLADVQGVHEQSKR-DQFLMKLRPEYKAARSNLMNRDLSPSLD 125
+L +++ M+ P+ + V +Q ++ D+F M L ++++ PSLD
Sbjct: 137 SLKEEFLTMM----PLTT-----DVGDQRRQIDKFFMVL-----TLIASILGSSSVPSLD 182
Query: 126 VCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVN 185
F LLR +TQT+ N D+++ ++GR R
Sbjct: 183 DVFAHLLRIS---STQTLPSDNT-SDSSV-------DNRGRGQR---------------- 215
Query: 186 CAKKFCNYCKKPGHIIKEC 204
C YC K GH C
Sbjct: 216 ---PHCTYCNKLGHTRDRC 231
>gi|340726666|ref|XP_003401675.1| PREDICTED: hypothetical protein LOC100647915 [Bombus terrestris]
Length = 536
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 61/141 (43%), Gaps = 28/141 (19%)
Query: 98 DQFLMKLRPEYKAARSNLMNRDLSPSLDVCFKELLREEQRLATQTI-LQQNKMHDNAIAY 156
D L+++ Y+ A + +++ D+SP+ D KE+L +E + I L + ++ +N +
Sbjct: 332 DPDLIRVATPYRTAEARVVHIDISPTADE-IKEILAQEGGCKVEDIQLGEIRISENGLGS 390
Query: 157 A-----------------AAHGKSKGR----DMRQVQCFSCKEYRHIIVNCAKK-----F 190
G+S+ + + R +QCF C E H+ +C K
Sbjct: 391 VWMRCPVEAVRKLIQLGKVTIGRSRAKIEAIEQRPLQCFRCLEIGHVKKSCTSKENREHL 450
Query: 191 CNYCKKPGHIIKECPTRPQNC 211
C C PGH+ KEC C
Sbjct: 451 CYRCGIPGHLAKECTAAKPKC 471
>gi|294888505|ref|XP_002772499.1| gag/pol/env polyprotein, putative [Perkinsus marinus ATCC 50983]
gi|239876725|gb|EER04315.1| gag/pol/env polyprotein, putative [Perkinsus marinus ATCC 50983]
Length = 2269
Score = 47.4 bits (111), Expect = 0.005, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Query: 168 MRQVQCFSCKEYRHI----IVNCAKKFCNYCKKPGHIIKECPT-RPQNCQASQAVVAS 220
M QV+C C Y + +++CAK C+ C PGH+ + CP+ +PQ Q + + +S
Sbjct: 719 MSQVRCDKCGLYHDVAPNPVLHCAKAICHRCSAPGHLCRACPSPKPQRGQPREQLPSS 776
>gi|147768773|emb|CAN60453.1| hypothetical protein VITISV_019551 [Vitis vinifera]
Length = 941
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 68/145 (46%), Gaps = 6/145 (4%)
Query: 11 SLVLNLKPYKTAKDMWEYLKKVY-NQDNTAKCFHLEYEIARYSQGDLSIQNYLSGIQNLW 69
+L+ N + T K +W+ + Y + +BT++ + L + R QG+ S++ + + +Q LW
Sbjct: 104 TLIGNFIRFPTTKLVWDAIXXTYFDGNBTSQVYELRRRVTRLQQGNGSLEKFYTELQGLW 163
Query: 70 AKYVDMIYVQVPIESLADVQGVHEQSKRDQ---FLMKLRPEYKAARSNLMNRDLSPSLDV 126
+ +D + P+E D+ ++ + D FL L RS+++ PS++
Sbjct: 164 WE-IDFRHPN-PMERATDIYHYNKLLQEDHVYTFLDGLDDRLDNIRSDVLQMRPFPSIEQ 221
Query: 127 CFKELLREEQRLATQTILQQNKMHD 151
+ + RE R A + N D
Sbjct: 222 AYAHVRREALRQAVMSTSDPNNTSD 246
>gi|147811660|emb|CAN65969.1| hypothetical protein VITISV_020934 [Vitis vinifera]
Length = 575
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 107/251 (42%), Gaps = 53/251 (21%)
Query: 4 IMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHL-----EYEIARYSQGDLSI 58
+ +V S+ + + +A ++WEYLK+ Y D K + E+E+ + + D ++
Sbjct: 73 LFAAVSPSIFIKIMKIDSAAEIWEYLKEEYKGDERIKNMQVMNLIREFEMKKMRESD-AV 131
Query: 59 QNYLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMN- 117
++Y + + ++ A V ++ + E + + L+ L +Y+A S+L N
Sbjct: 132 KDYAAQLLSI-ADKVRLLGKEFSNEKIV-----------QKILVTLPEKYEATISSLENS 179
Query: 118 RDLSPSLDVCFKELLR-----EEQRL---------ATQTILQQNKMHDNAIAYAAAHGKS 163
+DLS + ELL E++RL A Q +Q+N H N + KS
Sbjct: 180 KDLST---ISLTELLHSLEAVEQRRLMRQGDTAEGAFQARMQKNAGHKNG---KVNNNKS 233
Query: 164 KGRDMRQ---VQCFSCKEYRHIIVNCAKK---FCNYCKKPGHIIKECPTRPQN------- 210
G + + C CK+ H C + CN C K GH+ + C + Q
Sbjct: 234 CGNNQKNGVFPPCPHCKKTNHSPQKCWWRPDVKCNKCGKQGHVERICKNQQQEETSAAVD 293
Query: 211 -CQASQAVVAS 220
CQ Q VA+
Sbjct: 294 YCQEEQLFVAT 304
>gi|224057808|ref|XP_002299334.1| predicted protein [Populus trichocarpa]
gi|222846592|gb|EEE84139.1| predicted protein [Populus trichocarpa]
Length = 251
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 3/94 (3%)
Query: 113 SNLMNRDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQ 172
++L++R P+LD ELL EE LA + N + + ++ K + +
Sbjct: 8 ASLLHRSPLPTLDQAITELLSEETHLAPRKPTPIN-VAFTTVKEPQSNNKDQSYGSSKKI 66
Query: 173 CFSCKEYRHIIVNCAKKFCNYCKK--PGHIIKEC 204
C CK+ HI++ C + C +C K PGH+ ++C
Sbjct: 67 CNYCKKPGHILLECPIRVCRFCHKEAPGHLQRDC 100
>gi|27764668|gb|AAO23093.1| putative polyprotein [Oryza sativa Japonica Group]
gi|108709048|gb|ABF96843.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 594
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 60/123 (48%), Gaps = 5/123 (4%)
Query: 3 WIMGSV-DQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNY 61
W+ GSV D L L ++P ++A+D+W + ++ + + +L +E +QGDLS+ +Y
Sbjct: 93 WLFGSVADDVLDLAMEPDQSARDLWIAIDNLFQANKEPRTIYLHHEFHSMTQGDLSVADY 152
Query: 62 LSGIQNLWAKYVDMIY----VQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMN 117
++ D+ + Q+ + L V + + + P + +AR+ L+
Sbjct: 153 CQRMKTAADALRDVSHPVTESQLVLNLLRGVNSRFTSTADNIASAPVLPSFASARNTLVL 212
Query: 118 RDL 120
++L
Sbjct: 213 KEL 215
>gi|2245104|emb|CAB10526.1| retrotransposon like protein [Arabidopsis thaliana]
gi|7268497|emb|CAB78748.1| retrotransposon like protein [Arabidopsis thaliana]
Length = 1433
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 74/190 (38%), Gaps = 30/190 (15%)
Query: 24 DMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLSGIQNLWAKYVDMIYVQV--- 80
+MW L + N + + LE I QG+L + Y + + LW + + + V
Sbjct: 144 EMWNDLFSRFRVSNLPRKYQLEQSIHTLKQGNLDLSTYYTKKKTLWEQLANTRVLTVRKC 203
Query: 81 PIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRDLSPSLDVCFKELLREE-QRLA 139
E + ++ E S+ QFLM L + R ++N P L + L ++E QRL
Sbjct: 204 NCEHVKELLEEAETSRIIQFLMGLNDNFAHIRGQILNMKPRPGLTEIYNMLDQDESQRLV 263
Query: 140 TQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCA-----KKFCNYC 194
L S QVQ + + VN A K C+YC
Sbjct: 264 GNPTL------------------SNPTAAFQVQASPIIDSQ---VNMAQGSYKKPKCSYC 302
Query: 195 KKPGHIIKEC 204
K GH++ +C
Sbjct: 303 NKLGHLVDKC 312
>gi|294866685|ref|XP_002764811.1| hypothetical protein Pmar_PMAR004034 [Perkinsus marinus ATCC 50983]
gi|239864558|gb|EEQ97528.1| hypothetical protein Pmar_PMAR004034 [Perkinsus marinus ATCC 50983]
Length = 2024
Score = 47.0 bits (110), Expect = 0.006, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Query: 168 MRQVQCFSCKEYRHI----IVNCAKKFCNYCKKPGHIIKECPT-RPQNCQASQAVVAS 220
M QV+C C Y + +++CAK C+ C PGH+ + CP+ +PQ Q + + +S
Sbjct: 567 MSQVRCDKCGLYHDVAPNPVLHCAKAICHRCSTPGHLCRACPSPKPQRGQPREQLQSS 624
>gi|357473101|ref|XP_003606835.1| Arginine decarboxylase [Medicago truncatula]
gi|355507890|gb|AES89032.1| Arginine decarboxylase [Medicago truncatula]
Length = 815
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 54/124 (43%), Gaps = 32/124 (25%)
Query: 81 PIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRDLSPSLDVCFKELLREEQRLAT 140
P+ S V V+ S+RDQFLMK E++ R L+N + PSLD+C +
Sbjct: 583 PLLSSIVVCNVYNTSRRDQFLMKFHHEFEVVRVALLNMNYVPSLDICVE----------- 631
Query: 141 QTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCAKKFCNYCK----K 196
KMH I G GR + Q+Q + H+ + C K N C+ K
Sbjct: 632 -------KMHGKVI----MKGPKVGR-LLQIQFI----FGHLSLAC-KNVLNSCENWQIK 674
Query: 197 PGHI 200
GHI
Sbjct: 675 LGHI 678
>gi|296081554|emb|CBI20077.3| unnamed protein product [Vitis vinifera]
Length = 1050
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 67/141 (47%), Gaps = 6/141 (4%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQ-DNTAKCFHLEYEIARYSQGDLSIQ 59
M W++ S++ ++ TAKD+W+ +++ Y+ N + F ++ ++ QG S+
Sbjct: 639 MAWLINSMETAIGQTYLFLPTAKDLWDEVQETYSDLGNATQMFEIKTKLKDIKQGSHSVT 698
Query: 60 NYLSGIQNLWAK---YVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLM 116
Y + + N W + + +M + E A + E+ + FL L E R ++
Sbjct: 699 QYYNILPNAWQELDLFSNMEWKCA--EDNAHYCKILEKERAFDFLAGLNKELDEVRGQIL 756
Query: 117 NRDLSPSLDVCFKELLREEQR 137
++ PS+ F E+ RE+ R
Sbjct: 757 GKEPLPSVREIFSEVRREKSR 777
>gi|147792391|emb|CAN70277.1| hypothetical protein VITISV_022230 [Vitis vinifera]
Length = 1166
Score = 46.6 bits (109), Expect = 0.007, Method: Composition-based stats.
Identities = 36/142 (25%), Positives = 64/142 (45%), Gaps = 17/142 (11%)
Query: 7 SVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLSGIQ 66
SVD + +L+ YKT W K +Y D + + + +I Q D+ + Y+ I
Sbjct: 78 SVDPKIFHHLRAYKTCFKFWTQTKGLYTND-IQRFYKVVXDIVHVRQQDMBLSTYIGRIA 136
Query: 67 NLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLM-----KLRPEYKAARSNLMNRDLS 121
+L +++ ++ P + + Q Q D+F M L P+ ++ R ++
Sbjct: 137 SLKEEFLTLM----PFTNGXEAQ----QIXTDKFFMVLTLIGLXPDLESVRDQILASPSV 188
Query: 122 PSLDVCFKELLREEQRLATQTI 143
PSLB F LLR +TQT+
Sbjct: 189 PSLBDVFAXLLRLS---STQTL 207
>gi|147778586|emb|CAN69102.1| hypothetical protein VITISV_042048 [Vitis vinifera]
Length = 1135
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 76/179 (42%), Gaps = 20/179 (11%)
Query: 7 SVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLSGIQ 66
SVD + +L+ YKT W K +Y D + + + + D+ + Y I
Sbjct: 78 SVDPKIFHHLRAYKTYFKFWTQAKGLYTND-IQRFYKVVSDXVXVRXQDMDLSTYXGRIA 136
Query: 67 NLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLM-----KLRPEYKAARSNLMNRDLS 121
+L +++ +I P + A+ Q Q + ++F M LRP+ ++ R ++
Sbjct: 137 SLKKEFLTLI----PFTNGAEAQ----QIQTNKFFMVLTLIGLRPDLESVRDQILASPSV 188
Query: 122 PSLDVCFKELLREEQRLATQTILQQNKMHDNAIA--YAAAHGKSKGRDMRQVQCFSCKE 178
PSLD F LLR TQT+ + +A + G+S R R QC C +
Sbjct: 189 PSLDDVFARLLRLSY---TQTLSTDGPSDLSVLASQINSRGGRSGNRGQRP-QCTYCNK 243
>gi|147778997|emb|CAN60312.1| hypothetical protein VITISV_036303 [Vitis vinifera]
Length = 509
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 105/251 (41%), Gaps = 53/251 (21%)
Query: 4 IMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHL-----EYEIARYSQGDLSI 58
+ +V S+ + + +A ++WEYLK+ Y D K + E+E+ + + D ++
Sbjct: 73 LFAAVSPSIFIKIMKIDSAAEIWEYLKEEYKGDERIKNMQVMNLIREFEMKKMRESD-AV 131
Query: 59 QNYLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMN- 117
++Y + + ++ A V M+ + E + + L+ L +Y+A S+L N
Sbjct: 132 KDYAAQLLSI-ADKVRMLGKEFSNEKIV-----------QKILVTLPEKYEATISSLENS 179
Query: 118 RDLSPSLDVCFKELLR-----EEQRL---------ATQTILQQNKMHDNAIAYAAAHGKS 163
+DLS + ELL E++RL A Q +Q+N H N + KS
Sbjct: 180 KDLST---ISLTELLHSLEAVEQRRLMRQGDTAEGAFQVRMQKNAGHKNG---KVNNNKS 233
Query: 164 KGRDMRQ---VQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN------- 210
G + + C CK+ H C CN C K GH+ + C + Q
Sbjct: 234 CGNNQKNGVFPPCPHCKKTNHSPQKCWWRPDVKCNKCGKQGHVERICKNQQQEETSAAVD 293
Query: 211 -CQASQAVVAS 220
CQ Q A+
Sbjct: 294 YCQEEQLFAAT 304
>gi|147794801|emb|CAN71427.1| hypothetical protein VITISV_027864 [Vitis vinifera]
Length = 1300
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 47/214 (21%), Positives = 93/214 (43%), Gaps = 28/214 (13%)
Query: 7 SVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLSGIQ 66
++++ ++ +++ KT + W K++++ N + LE E+ +Q DL+I Y ++
Sbjct: 72 TIEEDVLEHIRDAKTPYEAWNTFTKLFSKKNDTRLQLLESELFSVAQRDLTIAQYFHKVK 131
Query: 67 NLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRDLSPSLDV 126
L + + + ++ PI E + + LRPE++ + + PSL V
Sbjct: 132 TL-CREISELDLEAPI---------GETXMKRIIIHGLRPEFRGFVAAIQGWQNQPSL-V 180
Query: 127 CFKELLREEQRLATQTILQQNKMHDNAIAYAAAHG--------KSKGRDMRQVQCFSCKE 178
F+ LL ++ LA Q K + A+ YA G + ++ + +C +
Sbjct: 181 EFENLLAGQEALAKQMGGVSLKGEEEAL-YAHKGGWNSXQHTVRRTKKNEDKAKCSQGER 239
Query: 179 YRHIIVN-----CAKKF---CNYCKKPGHIIKEC 204
+ + KKF C C K GH+ K+C
Sbjct: 240 SARVEGDSKNPGTXKKFEGKCYNCXKKGHMAKDC 273
>gi|147857574|emb|CAN81001.1| hypothetical protein VITISV_006992 [Vitis vinifera]
Length = 1131
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 61/119 (51%), Gaps = 5/119 (4%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
++W++ S+ + ++ +T ++W L++ ++Q N ++ + ++ +I + QG SI
Sbjct: 85 ISWLLNSIHPDIASSVIYAETTSEIWADLRERFSQGNDSRIYQIKRDIVEHRQGQQSISV 144
Query: 61 YLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRD---QFLMKLRPEYKAARSNLM 116
Y + ++ W + Y +V S ++ + E +++ QFLM L Y A R ++
Sbjct: 145 YYTKLKAFWDELSS--YHEVLSCSCGGLEKLKEMDEKERVMQFLMGLNDSYAAIRGQIL 201
>gi|147768125|emb|CAN71652.1| hypothetical protein VITISV_017444 [Vitis vinifera]
Length = 887
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 70/140 (50%), Gaps = 5/140 (3%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQ-DNTAKCFHLEYEIARYSQGDLSIQ 59
+ W++ S++ + TAK + + + Y+ N+++ + L+ +I +QG++S+
Sbjct: 92 LAWLVNSMEPEISQTYMHLSTAKQLLDVVNDTYSDLGNSSQVYELKTKIRNTTQGNMSVT 151
Query: 60 NYLSGIQNLWAKYVDMIY--VQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMN 117
+Y + +++LW + +D+ Y E A Q E+ + +FL L + R ++
Sbjct: 152 SYYNMLKSLWQE-LDLFYDLEWSCAEDSAQYQRTVEKDRVMEFLAGLNTDLDEVRGRVLG 210
Query: 118 RDLSPSLDVCFKELLREEQR 137
++ P + F E+ REE R
Sbjct: 211 KESLP-ISKAFSEVRREESR 229
>gi|147819089|emb|CAN69819.1| hypothetical protein VITISV_025708 [Vitis vinifera]
Length = 1626
Score = 46.2 bits (108), Expect = 0.009, Method: Composition-based stats.
Identities = 47/203 (23%), Positives = 79/203 (38%), Gaps = 32/203 (15%)
Query: 7 SVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLSGIQ 66
SVD ++L+L+ YKT W K +Y D + + + I SQ DL + Y+ I
Sbjct: 526 SVDPRILLHLRAYKTCFKFWTQAKGLYTND-IQRLYKVASAIVHISQQDLDLSTYIGQIA 584
Query: 67 NLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLM-----KLRPEYKAARSNLMNRDLS 121
+L + + ++ P+ Q Q++ D+F M LRP+ + R ++
Sbjct: 585 SLKEEXLTVM----PLTPDVGAQ----QTQLDKFFMVLTLIGLRPDLEPIRDQILGSSSV 636
Query: 122 PSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRH 181
SLD F LL +++ L + D+++ + Q S
Sbjct: 637 SSLDDVFARLLC----ISSTQTLPSDSTSDSSVLVS--------------QTTSRGGRSG 678
Query: 182 IIVNCAKKFCNYCKKPGHIIKEC 204
+ C YC K GH C
Sbjct: 679 TRGRGQRPHCTYCNKLGHTRDXC 701
>gi|87240899|gb|ABD32757.1| Integrase, catalytic region [Medicago truncatula]
Length = 1157
Score = 46.2 bits (108), Expect = 0.009, Method: Composition-based stats.
Identities = 43/215 (20%), Positives = 85/215 (39%), Gaps = 26/215 (12%)
Query: 2 TWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNY 61
+WI+ SV +S+ + + TA W+ LK+ +++ + + L I QG S+ +Y
Sbjct: 83 SWIVNSVTESIAQTIVFHDTALSAWDDLKECFSKVDRVRVLSLRSTINNLKQGTKSVLDY 142
Query: 62 LSGIQNLWAKYVDMIYVQVPI-----------ESLADVQGVHEQSKRDQFLMKLRPEYKA 110
+ LW D + PI ES+ + + + QFL L +
Sbjct: 143 FIELCTLW----DELNSHRPIPNCTCIHPCRCESIRLAKYYRTEDQILQFLTGLNDTFSV 198
Query: 111 ARSNLMNRDLSPSLDVCFKELLREE-QRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMR 169
++ ++ D P ++ + +++EE Q + T + + A A +G+
Sbjct: 199 VKTQILLMDPLPPINKVYSLVVQEESQNIVFSTPSISDDSSISVNASDARKFYPRGKGTS 258
Query: 170 QVQCFSCKEYRHIIVNCAKKFCNYCKKPGHIIKEC 204
K+ +FC +C + H I+ C
Sbjct: 259 STSANKGKD----------RFCTFCNRYNHTIEFC 283
>gi|222628873|gb|EEE61005.1| hypothetical protein OsJ_14820 [Oryza sativa Japonica Group]
Length = 232
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 3 WIMGSV-DQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNY 61
W+ GSV D L L ++P ++A+D+W + ++ + + +L +E +QGDLS+ +Y
Sbjct: 33 WLFGSVADDVLDLAMEPDQSARDLWIAIDNLFQANKEPRTIYLHHEFHSMTQGDLSVADY 92
>gi|147817207|emb|CAN70866.1| hypothetical protein VITISV_027609 [Vitis vinifera]
Length = 759
Score = 46.2 bits (108), Expect = 0.010, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 19 YKTAKDMWEYLKKVY-NQDNTAKCFHLEYEIARYSQGDLSIQNYLSGIQNLWAKYVDMIY 77
Y TAK+MW+ L Y + +N+A+ F L+ QG+L + Y + + LW +Y
Sbjct: 19 YSTAKEMWDALTLAYLDLENSAQLFELQNRACDLKQGELDVAQYFNALTRLWQDI--NLY 76
Query: 78 VQVP 81
VQ+P
Sbjct: 77 VQIP 80
>gi|313184289|emb|CBL94154.1| putative polyprotein (retrotrasposon protein) [Malus x domestica]
Length = 1390
Score = 45.8 bits (107), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 73/142 (51%), Gaps = 6/142 (4%)
Query: 3 WIMGSVDQSLVLNLKPYKTAKDMWEYLKKVY-NQDNTAKCFHLEYEIARYSQGDLSIQNY 61
W++ S++ +++ +TAK++WE + + Y + + ++ + L+ + R Q + Y
Sbjct: 89 WLINSMEPAIMGFFIHLRTAKEVWEEVARTYYDGSDISQIYELKVKSFRLRQEGRQVGVY 148
Query: 62 LSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQ---FLMKLRPEYKAARSNLMNR 118
+ ++++W + ++ +E D + + E+ + D+ FL+ L + RS+++
Sbjct: 149 YADLKSVWQELDQRRPIK--MECAVDFKTLREEIQLDRVYAFLVGLDDVFDKVRSDILRT 206
Query: 119 DLSPSLDVCFKELLREEQRLAT 140
PS++ F + RE QR AT
Sbjct: 207 QPLPSVEEVFSVVRREAQRHAT 228
>gi|147837072|emb|CAN63639.1| hypothetical protein VITISV_038692 [Vitis vinifera]
Length = 199
Score = 45.8 bits (107), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 93/205 (45%), Gaps = 26/205 (12%)
Query: 13 VLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLSGIQNLWAKY 72
V++ P T++ + + ++Y D + + + Y+I Q ++ + Y+ I +L ++
Sbjct: 11 VISGSPTITSEKL---IGRLYTND-IQRFYKVIYDIVHVRQQNMDLSTYIGRIASLKEEF 66
Query: 73 VDMIYVQVPIESLADVQGVHEQSKRDQF-----LMKLRPEYKAARSNLMNRDLSPSLDVC 127
+ ++ P + A+ Q Q + D+F L+ LRP+ + + ++ PSLD
Sbjct: 67 LTLM----PFTNGAEAQ----QIQTDKFFIVLTLIGLRPDLEFVQDQILASPSVPSLDDV 118
Query: 128 FKELLREEQRLATQTILQQNKMHDNAIAYAAAH---GKSKGRDMRQ-VQCFSCKEYRHII 183
F LL RL++ L + D+++ + + G+S RD Q QC C ++ H
Sbjct: 119 FARLL----RLSSTQTLSTDSPSDSSVLASQTNSRGGRSGNRDRGQRPQCTYCNKFGHSR 174
Query: 184 VNCAKKFCNYCKKPGHIIKECPTRP 208
+C + + HI + T P
Sbjct: 175 DHC-YQLHGRPPRTAHIAQSSDTLP 198
>gi|147820734|emb|CAN74132.1| hypothetical protein VITISV_015703 [Vitis vinifera]
Length = 254
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 77/192 (40%), Gaps = 30/192 (15%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVY-NQDNTAKCFHLEYEIARYSQGDLSIQ 59
++W++ S++ + TAK +W+ + + Y + +N+A+ F + +I Q
Sbjct: 78 ISWLINSMESEIGQTYMFLPTAKQVWDVVVETYSDMENSAQVFEITNKIQELKQE----- 132
Query: 60 NYLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQ---FLMKLRPEYKAARSNLM 116
+DM Y + + D + +RDQ FL L E ++
Sbjct: 133 -------------LDMFY-NLEWTCVTDSTRYMKMLERDQVFTFLAGLNKELDEVHGCIL 178
Query: 117 NRDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSC 176
+D PS+ F E+ REE R +Q M + AA + K D +V C C
Sbjct: 179 WKDPLPSVQAVFSEVCREESR-------RQVMMETLTLPNAARRNQEKEDDKGKVWCDFC 231
Query: 177 KEYRHIIVNCAK 188
+ RH C K
Sbjct: 232 NKPRHTRETCWK 243
>gi|4309765|gb|AAD15534.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1664
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 63/133 (47%), Gaps = 13/133 (9%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVY-NQDNTAKCFHLEYEIARYSQGDLSIQ 59
+ + S++ SL+ +TAK++WE L V+ NQ N ++ F ++ I SQGD+
Sbjct: 71 LALLQNSLEASLLEAYSYCETAKELWETLFNVFGNQSNLSRVFEVKKAINDLSQGDMEFT 130
Query: 60 NYLSGIQNLWAKY----VDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNL 115
+ ++LWA+ + + +V IE EQ K L+ L Y +L
Sbjct: 131 QHFGKFRSLWAELEMLRPNTLDPKVLIER-------REQDKVFGLLLTLSSTYNDLIKHL 183
Query: 116 MNRDLSPSL-DVC 127
+ D P+L +VC
Sbjct: 184 LRADKLPNLEEVC 196
>gi|147826995|emb|CAN77775.1| hypothetical protein VITISV_021887 [Vitis vinifera]
Length = 735
Score = 45.8 bits (107), Expect = 0.013, Method: Composition-based stats.
Identities = 53/237 (22%), Positives = 96/237 (40%), Gaps = 46/237 (19%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
++WI+ S+ +++ ++ +T+ ++W L+K++ D+ A+ L + + +G LSI +
Sbjct: 89 LSWILASIFEAMYGHVVNCQTSTEVWSVLEKLFVSDSKARTLQLRFMLQSLKKGALSIND 148
Query: 61 YLSGIQNLWAKYVDMIYVQ---VPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMN 117
Y+ ++N+ DM+ VP E L L L PE++ N+ +
Sbjct: 149 YVLKMRNI----ADMLSTSGKPVPYEDLILY-----------ILGGLGPEFETIVVNITS 193
Query: 118 RDLSPSLDVCFKELLREEQRL-------------ATQTILQ--QNKMHDNAIAYAAAHGK 162
R + SL L E RL A TI QN ++ +++
Sbjct: 194 RSEAISLQEVHYLLQSHEIRLEQLSVASVIDVPPAAHTITGGVQNSNTNDGQFRGSSNRN 253
Query: 163 SKGRDMRQVQCFS-----CKEYRHIIVNCAKKFCNYCKKPGHIIKECPTRPQNCQAS 214
+ R++R Q C + H + C F Y + P R QN Q S
Sbjct: 254 FRPRNVRNPQTSRIVYQLCGKMGHTAMKCFHHFDVYFQS--------PPRAQNQQFS 302
>gi|147865929|emb|CAN80975.1| hypothetical protein VITISV_039739 [Vitis vinifera]
Length = 274
Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 69/140 (49%), Gaps = 6/140 (4%)
Query: 2 TWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQD--NTAKCFHLEYEIARYSQGDLSIQ 59
TW++ S++ + TAKD+W+ ++ N D N ++ F + ++ QG S+
Sbjct: 109 TWLINSMEPMISRRYLFLPTAKDVWDTPRRT-NSDLGNASQVFKIPSKLKEMKQGTKSVT 167
Query: 60 NYLSGIQNLWAKYVDMIYVQVPIESLADVQ--GVHEQSKRDQFLMKLRPEYKAARSNLMN 117
Y + +Q+ W + V + + + + +V+ + E+ + FL L R ++++
Sbjct: 168 QYFTDLQDSWQELV-LFLEEDSVCATCNVKQRQILEKERVYDFLAGLNRGLDEVRGHILS 226
Query: 118 RDLSPSLDVCFKELLREEQR 137
R P+ + F E+ REE+R
Sbjct: 227 RLPFPTTEEAFAEVHREEKR 246
>gi|297740978|emb|CBI31290.3| unnamed protein product [Vitis vinifera]
Length = 1201
Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 70/165 (42%), Gaps = 17/165 (10%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
++WI S+ ++ + +T+ + W L++ ++ A+ L +G L++
Sbjct: 189 LSWIYSSLTPDVMGQIVGLQTSHEAWTALQRSFSASTKARTMQLRLAFQTNKKGSLTMME 248
Query: 61 YLSGIQNLWAKYVDMIYVQVPIESLADV-QGVHEQSKRDQFLMKLRPEYKAARSNLMNRD 119
Y+ ++++ +SLA + + V E+ + Q L L EY ++L RD
Sbjct: 249 YIQKLKHI-------------SDSLAAIGEPVPEKDQILQLLSGLGAEYNPIIASLTTRD 295
Query: 120 LSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSK 164
L LL EQRL QT + D IA A H + +
Sbjct: 296 DDIQLHAVHSILLTHEQRLPLQTTPTEE---DLLIANFATHNRPR 337
>gi|126542345|gb|ABO16604.1| gag protein [Feline immunodeficiency virus]
gi|134284743|gb|ABO69441.1| gag [Feline immunodeficiency virus]
Length = 462
Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 74/165 (44%), Gaps = 17/165 (10%)
Query: 47 EIARYSQGDLSIQNYLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRP 106
E+ + G N G + +++++VD ++ Q+ ES Q V + K + P
Sbjct: 265 ELRKIRAGAPRAVNVKQGPKEIYSEFVDRLFKQIEAESAP--QDVKQYLKDSLSISNANP 322
Query: 107 EYKAARSNLMNRDLSPSLDVCFKELLREEQRLATQTILQQNKMHD--NAIAYAAAHGKSK 164
E K A ++L D ++ +R Q + + T + N + + K+K
Sbjct: 323 ECKRAMNHLRPEDK-------LEDKIRACQDIGS-TAYKMNMLAQALQQVRVQQVQVKAK 374
Query: 165 GRDMRQ----VQCFSCKEYRHIIVNC-AKKFCNYCKKPGHIIKEC 204
GR ++ ++CF+C + H+ NC A K CN C K GHI +C
Sbjct: 375 GRKLQNRGGPLKCFNCGKAGHMARNCRAPKRCNKCGKSGHISTDC 419
>gi|126542347|gb|ABO16605.1| gag protein [Feline immunodeficiency virus]
gi|134284754|gb|ABO69451.1| gag [Feline immunodeficiency virus]
Length = 462
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 74/165 (44%), Gaps = 17/165 (10%)
Query: 47 EIARYSQGDLSIQNYLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRP 106
E+ + G N G + +++++VD ++ Q+ ES Q V + K + P
Sbjct: 265 ELRKIRAGAPRAVNVKQGPKEIYSEFVDRLFKQIEAESAP--QDVKQYLKDSLSISNANP 322
Query: 107 EYKAARSNLMNRDLSPSLDVCFKELLREEQRLATQTILQQNKMHD--NAIAYAAAHGKSK 164
E K A S+L D ++ +R Q + + T + N + + K+K
Sbjct: 323 ECKRAMSHLRPEDK-------LEDKIRACQDIGS-TAYKMNMLAQALQQVRVQQVQVKAK 374
Query: 165 GRDMRQ----VQCFSCKEYRHIIVNC-AKKFCNYCKKPGHIIKEC 204
G+ ++ ++CF+C + H+ NC A K CN C K GHI +C
Sbjct: 375 GKKLQNRGGPLKCFNCGKAGHMARNCRAPKRCNKCGKSGHISTDC 419
>gi|147807757|emb|CAN75478.1| hypothetical protein VITISV_020209 [Vitis vinifera]
Length = 1074
Score = 45.4 bits (106), Expect = 0.017, Method: Composition-based stats.
Identities = 38/165 (23%), Positives = 70/165 (42%), Gaps = 17/165 (10%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
++WI S+ ++ + +T+ + W L++ ++ A+ L +G L++
Sbjct: 45 LSWIYSSLTPDVMRQIVGLQTSHEAWTALQQSFSASTKARTMQLRLAFQTTKKGSLTMME 104
Query: 61 YLSGIQNLWAKYVDMIYVQVPIESLADV-QGVHEQSKRDQFLMKLRPEYKAARSNLMNRD 119
Y+ ++++ +SLA + + V E+ + Q L L EY ++L RD
Sbjct: 105 YIQKLKHI-------------SDSLAAIGEPVPEKDQILQLLSGLGAEYNPIVASLTARD 151
Query: 120 LSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSK 164
L LL EQRL QT + D IA A H + +
Sbjct: 152 DDIQLHAVHSILLTHEQRLHLQTTATE---EDLLIANFATHNRPR 193
>gi|147767220|emb|CAN62449.1| hypothetical protein VITISV_044204 [Vitis vinifera]
Length = 571
Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 105/241 (43%), Gaps = 47/241 (19%)
Query: 4 IMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHL-----EYEIARYSQGDLSI 58
+ +V S+ + + +A ++WEYLK+ Y D K + E+E+ + + D ++
Sbjct: 106 LFAAVSPSIFIKIMKIDSAAEIWEYLKEEYKGDERIKNMQVMNLIREFEMKKMRESD-AV 164
Query: 59 QNYLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMN- 117
++Y + + ++ A V ++ + E + + L+ L +Y+A S+L N
Sbjct: 165 KDYAAQLLSI-ADKVRLLGKEFSNEKIV-----------QKILVTLPEKYEATISSLENS 212
Query: 118 RDLSPSLDVCFKELLR-----EEQRL---------ATQTILQQNKMHDNAIAYAAAHGKS 163
+DLS + ELL E++RL A Q +Q+N H N + KS
Sbjct: 213 KDLS---TISLTELLHSLEAVEQRRLMRQGDTAEGAFQARMQKNAGHKNG---KVNNNKS 266
Query: 164 KGRDMRQ---VQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQNCQASQAV 217
G + + C CK+ H C CN C K GH+ + C + Q + + AV
Sbjct: 267 CGNNQKNGVFPPCPHCKKTNHSPQKCWWRPDVKCNKCGKQGHVERICKNQQQ--EETNAV 324
Query: 218 V 218
V
Sbjct: 325 V 325
>gi|147812205|emb|CAN68854.1| hypothetical protein VITISV_000898 [Vitis vinifera]
Length = 559
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 60/251 (23%), Positives = 105/251 (41%), Gaps = 53/251 (21%)
Query: 4 IMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHL-----EYEIARYSQGDLSI 58
+ +V S+ + + +A ++WEYLK+ Y D K + E+E+ + + D ++
Sbjct: 73 LFAAVSPSIFIKIMKIDSAAEIWEYLKEEYKGDERIKNMQVMNLIREFEMKKMRESD-AV 131
Query: 59 QNYLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMN- 117
++Y + + ++ A V ++ + E + + L+ L +Y+A S+L N
Sbjct: 132 KDYAAQLLSI-ADKVRLLGKEFSNEKIV-----------QKILVTLPEKYEATISSLENS 179
Query: 118 RDLSPSLDVCFKELLR-----EEQRL---------ATQTILQQNKMHDNAIAYAAAHGKS 163
+DLS + ELL E++RL A Q +Q+N H N + KS
Sbjct: 180 KDLST---ISLTELLHSLEAVEQRRLMRQGDTAEGAFQARMQKNAGHKNG---KVNNNKS 233
Query: 164 KGRDMRQ---VQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN------- 210
G + + C CK+ H C CN C K GH+ + C + Q
Sbjct: 234 CGNNQKNGVFPPCPHCKKTNHSPQKCWWRPDVKCNKCGKQGHVERICKNQQQEETSAAVD 293
Query: 211 -CQASQAVVAS 220
CQ Q A+
Sbjct: 294 YCQEEQLFAAT 304
>gi|147784156|emb|CAN77225.1| hypothetical protein VITISV_002211 [Vitis vinifera]
Length = 1605
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 69/166 (41%), Gaps = 23/166 (13%)
Query: 44 LEYEIARYSQGDLSIQNYLSGIQNLWAKYVDMIYVQVP--IESLADVQGVHEQSKRDQFL 101
+E + + QG+ S+ Y + + W + +D+ + A + + EQ + +F
Sbjct: 381 VESALHDFRQGEQSVTQYYNTLTRYWQQ-LDLFETHSWKCSDDAATYRQIVEQKRLFKFF 439
Query: 102 MKLRPEYKAARSNLMNRDLSPSLDVCFKELLREEQRLATQTIL---QQNKMHDNAIAYAA 158
+ L E R +M PSL F E+ REE R + I+ +Q + A AA
Sbjct: 440 LGLNRELNDVRGRIMGIKPLPSLKEAFSEVRREESR--KKVIMGSKEQPAPTLDGSALAA 497
Query: 159 AHGKSKGRDMRQVQCFSCKEYRHIIVNCAKKFCNYCKKPGHIIKEC 204
S G D ++ + +C+YCKKPGH + C
Sbjct: 498 RSFNSSGGDRQKRD---------------RPWCDYCKKPGHYKEAC 528
>gi|10177143|dbj|BAB10503.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
Length = 1475
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 44/195 (22%), Positives = 77/195 (39%), Gaps = 9/195 (4%)
Query: 2 TWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNY 61
+WI+ SV + + ++ + A ++W+ L ++ N + + L +I QG +S+ +Y
Sbjct: 132 SWILNSVTKQIYKSILRFNDAAEIWKDLDTRFHITNLPRSYQLTQQIWSLQQGTMSLSDY 191
Query: 62 LSGIQNLWAKYVDMIYVQV--PIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRD 119
+ ++ LW V + E SK +FL L Y RS ++ +
Sbjct: 192 YTALKTLWDDLDGASCVSTCKNCTCCIATASMIEHSKIVKFLSGLNESYSTIRSQIIMKK 251
Query: 120 LSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIA-----YAAAHGKSKGRDMR-QVQC 173
P L + LL ++ + N N A +A KS G + +VQC
Sbjct: 252 TIPDLAEIY-NLLDQDHSQRNIVTMPTNASTFNVSAPQSDQFAVNLAKSFGTQPKPKVQC 310
Query: 174 FSCKEYRHIIVNCAK 188
C H C K
Sbjct: 311 SHCGYTGHNADTCYK 325
>gi|147854508|emb|CAN82791.1| hypothetical protein VITISV_033795 [Vitis vinifera]
Length = 314
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 86/205 (41%), Gaps = 10/205 (4%)
Query: 3 WIMGSVDQSLVLNLKPYKTAKDMWEYLKKV-YNQDNTAKCFHLEYEIARYSQGDLSIQNY 61
W++ S+ ++ TA+++W L K Y+ + + F L + Q D S+ Y
Sbjct: 73 WLLMSMSPEIMKRYLRLPTAQEIWSALSKAFYDGSDELQVFTLNQKAFTAKQNDKSLSEY 132
Query: 62 LSGIQNLWAK--YVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRD 119
+ L+ + + D + ++ P E +A + E+ + + FL L +++ R ++ +D
Sbjct: 133 YGELTELFCELDHRDKVVMKDP-EDIAAYRKSIERQRVNIFLAGLGGDFEQVRGEILRKD 191
Query: 120 LSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEY 179
P L+ C+ + RE R A+ N D + +D Q + K
Sbjct: 192 PLPDLEECYALIRREAVRHASMKAESNNP--DTSAMVVRQQSTRNWQD--QSKTNHSKTN 247
Query: 180 RHIIVNCAKKFCNYCKKPGHIIKEC 204
+I + K C +C K GH C
Sbjct: 248 PNIDKSTFK--CTHCNKTGHTKSRC 270
>gi|147857655|emb|CAN83079.1| hypothetical protein VITISV_024674 [Vitis vinifera]
Length = 595
Score = 45.1 bits (105), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 60/251 (23%), Positives = 105/251 (41%), Gaps = 53/251 (21%)
Query: 4 IMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHL-----EYEIARYSQGDLSI 58
+ +V S+ + + +A ++WEYLK+ Y D K + E+E+ + + D ++
Sbjct: 73 LFAAVSPSIFIKIMKIDSAAEIWEYLKEEYKGDERIKNMQVMNLIREFEMKKMRESD-AV 131
Query: 59 QNYLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMN- 117
++Y + + ++ A V ++ + E + + L+ L +Y+A S+L N
Sbjct: 132 KDYAAQLLSI-ADKVRLLGKEFSNEKIV-----------QKILVTLPEKYEATISSLENS 179
Query: 118 RDLSPSLDVCFKELLR-----EEQRL---------ATQTILQQNKMHDNAIAYAAAHGKS 163
+DLS + ELL E++RL A Q +Q+N H N + KS
Sbjct: 180 KDLS---TISLTELLHSLEAVEQRRLMRQGDTAEGAFQARMQKNAGHKNG---KVNNNKS 233
Query: 164 KGRDMRQ---VQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN------- 210
G + + C CK+ H C CN C K GH+ + C + Q
Sbjct: 234 CGNNQKNGVFPPCPHCKKTNHSPQKCWWRPDVKCNKCGKQGHVERICKNQQQEETSAAVD 293
Query: 211 -CQASQAVVAS 220
CQ Q A+
Sbjct: 294 YCQEEQLFAAT 304
>gi|147782683|emb|CAN75028.1| hypothetical protein VITISV_026823 [Vitis vinifera]
Length = 2182
Score = 45.1 bits (105), Expect = 0.021, Method: Composition-based stats.
Identities = 17/70 (24%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQ-DNTAKCFHLEYEIARYSQGDLSIQ 59
M W++ ++++ + N Y TAK++W+ + ++Y+ N ++ + LE ++ Q D +
Sbjct: 1870 MAWLVNAMEEDISANYMCYSTAKELWDNINQMYSDFGNQSQVYELEMKLGEIRQEDNIVT 1929
Query: 60 NYLSGIQNLW 69
Y + ++ LW
Sbjct: 1930 RYFNTLKGLW 1939
>gi|8927258|gb|AAF82028.1|AF208027_1 gag protein [Human immunodeficiency virus 2]
Length = 509
Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 149 MHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECP 205
++ A+ +AAA K+ G+ ++C++C + H + C ++ C C KPGHI+ +CP
Sbjct: 373 LNPTALPFAAAQQKTGGKR-STIKCWNCGKEGHTVRQCRAPRRQGCWKCGKPGHIMAKCP 431
Query: 206 TR 207
R
Sbjct: 432 ER 433
>gi|389610781|dbj|BAM19001.1| simila to CG3800 [Papilio polytes]
Length = 145
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 51/126 (40%), Gaps = 3/126 (2%)
Query: 88 VQGVHEQSKRDQFLMKLRPEYKAARSNLMNRDLSPSLDVCFK-ELLREEQRLATQTILQQ 146
QG S+ F + +K R+ RD D C++ R Q+ +
Sbjct: 20 TQGGGVASRDTGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEP 79
Query: 147 NKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNC--AKKFCNYCKKPGHIIKEC 204
+ + N + A + GRD C++C + HI NC K C C KPGHI ++C
Sbjct: 80 SCYNCNKTGHIARNCPEGGRDSSGQTCYTCNKAGHISRNCPDGTKTCYVCGKPGHISRDC 139
Query: 205 PTRPQN 210
+N
Sbjct: 140 DESERN 145
>gi|326515834|dbj|BAK07163.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 351
Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 92/214 (42%), Gaps = 37/214 (17%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYN-QDNTAKCFHLEYEIARYSQGD-LSI 58
+ W+ SV S+ ++ T+ ++W+ L Y+ + N +E +I+R QGD +S+
Sbjct: 99 VGWLFNSVVPSISRFVEGLSTSAEIWKTLSTQYSGKGNFMLIAQIEGKISRLRQGDDMSV 158
Query: 59 QNYLSGIQNLWAKYVD----MIYVQVPIESLADVQGVHEQSKRD--QFLMKLRPEYKAAR 112
Y++ +Q LWA+ + +Y IES G ++R + L LR +
Sbjct: 159 MAYVAELQALWAEQDNCDPLELYDAACIES-----GRKWIARRRVLELLEGLRGCFHGRG 213
Query: 113 SNLMNRDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQ 172
++L+++ L P+++ + +EE RL+ + N A +A G +
Sbjct: 214 ASLLHQPLLPTIEETIAAMSQEEVRLSLE---HANVKFVPASTFAVTERMEWGDPNK--- 267
Query: 173 CFSCKEYRHIIVNCAKKFCNYCKKPGHIIKECPT 206
C+ C + GH +ECPT
Sbjct: 268 ------------------CHICGEVGHWKRECPT 283
>gi|9929868|dbj|BAB12109.1| gag polyprotein [Equine infectious anemia virus]
Length = 488
Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 67/168 (39%), Gaps = 27/168 (16%)
Query: 54 GDLSIQNYLSGIQNLWAKYVDMIYVQVPIES--------LADVQGVHEQSKRDQFLMK-L 104
G QN G++ + +++D + Q+ E L D + ++ + M+ L
Sbjct: 270 GKPKAQNIRQGVKEPYPEFIDRLLSQIKSEGHPQEISKFLTDTLTIQNANEECRNAMRHL 329
Query: 105 RPEYKAARSNLMNRDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSK 164
RPE RD+ + Q ++ K +A G K
Sbjct: 330 RPEDTLEEKMYACRDIGTT----------------KQKMMLLAKALQTGLAGPFKGGALK 373
Query: 165 GRDMRQVQ-CFSCKEYRHIIVNC-AKKFCNYCKKPGHIIKECPTRPQN 210
G ++ Q C++C + H+ C A K C CK+PGH K+C + P+N
Sbjct: 374 GGPLKAAQTCYNCGKPGHLSSQCRAPKVCFKCKQPGHFSKQCRSVPKN 421
>gi|77551568|gb|ABA94365.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1064
Score = 44.7 bits (104), Expect = 0.028, Method: Composition-based stats.
Identities = 34/139 (24%), Positives = 60/139 (43%), Gaps = 15/139 (10%)
Query: 3 WIMGSV-DQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNY 61
W+ GSV D L + ++P +TA+D+W + ++ + + +L +E +QGD+ I Y
Sbjct: 91 WLFGSVSDAILDVVMEPDQTARDLWLAIDDLFQANKEPRAIYLSHEFHSMTQGDMPIAIY 150
Query: 62 LSGIQNLWAKYVDMIYVQVPIESLADV-QGVHEQSKRDQFLMKLRPEYKAARSNLMNRDL 120
V+ ++L DV V E L L + + N+ + +
Sbjct: 151 CQK-------------VKTAADALRDVGHPVTESQLVLNLLSGLNSRFSSTADNITSAPV 197
Query: 121 SPSLDVCFKELLREEQRLA 139
PS LL +E R+A
Sbjct: 198 LPSFTSARNTLLLKELRVA 216
>gi|9929861|dbj|BAB12103.1| gag polyprotein [Equine infectious anemia virus]
Length = 488
Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 66/168 (39%), Gaps = 27/168 (16%)
Query: 54 GDLSIQNYLSGIQNLWAKYVDMIYVQVPIES--------LADVQGVHEQSKRDQFLMK-L 104
G QN G++ + +++D + Q+ E L D + ++ + M+ L
Sbjct: 270 GKPKAQNIRQGVKEPYPEFIDRLLSQIKSEGHPQEISKFLTDTLTIQNANEECRNAMRHL 329
Query: 105 RPEYKAARSNLMNRDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSK 164
RPE RD+ Q ++ K +A G K
Sbjct: 330 RPEDTLEEKMYACRDIG----------------TTKQKMMLLAKALQTGLAGPFKGGALK 373
Query: 165 GRDMRQVQ-CFSCKEYRHIIVNC-AKKFCNYCKKPGHIIKECPTRPQN 210
G ++ Q C++C + H+ C A K C CK+PGH K+C + P+N
Sbjct: 374 GGPLKAAQTCYNCGKPGHLSSQCRAPKVCFKCKQPGHFSKQCRSVPKN 421
>gi|218184311|gb|EEC66738.1| hypothetical protein OsI_33081 [Oryza sativa Indica Group]
Length = 801
Score = 44.7 bits (104), Expect = 0.029, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 171 VQCFSCKEYRHIIVNCAK-KFCNYCKKPGHIIKECPTRPQNCQ 212
++C++C E+ H +V C K C CK GHI CPT +C+
Sbjct: 344 IKCYNCGEFGHHLVRCTKLSLCYVCKSSGHISSHCPTMMGSCK 386
>gi|147799478|emb|CAN68461.1| hypothetical protein VITISV_037728 [Vitis vinifera]
Length = 472
Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 75/175 (42%), Gaps = 21/175 (12%)
Query: 21 TAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLSGIQNLWAKYVDMIYVQV 80
T KD + KV + A+ + +I Q D+ + Y+ I +L +++ ++
Sbjct: 51 TPKDAITDVDKVQRKKIDAQLCSVVSDIVHVRQQDMDLSTYIGQIASLKEEFLTLM---- 106
Query: 81 PIESLADVQGVHEQSKRDQFLM-----KLRPEYKAARSNLMNRDLSPSLDVCFKELLREE 135
P + A+ Q Q + D+F M LRP+ ++ R ++ PSLD F LLR
Sbjct: 107 PFTNGAEAQ----QIQTDKFFMVLTLIGLRPDLESVRDQILASPSVPSLDDVFARLLRVS 162
Query: 136 QRLATQTILQQNKMHDNAIA--YAAAHGKSK--GRDMRQVQCFSCKEYRHIIVNC 186
+TQT+ + +A + G+S GR R QC C + H C
Sbjct: 163 ---STQTLSTDGPSDSSVLASQTNSRGGRSGNWGRGQRP-QCTYCNKLGHTRDRC 213
>gi|5306246|gb|AAD41979.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1264
Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 44/205 (21%), Positives = 79/205 (38%), Gaps = 14/205 (6%)
Query: 2 TWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNY 61
+W++ S+ + ++ D+W L +N N + ++L EI Q LS+ Y
Sbjct: 104 SWLLNSMSPQIYRSILRMNDVSDIWRDLNSRFNMTNLPRTYNLTQEIQDLRQSTLSLSEY 163
Query: 62 LSGIQNLWAKYVDMIYVQVPIE--SLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRD 119
+ ++ LW + + P +Q E++K +FL L Y R ++ +
Sbjct: 164 YTRLKTLWDQLNSTEELDDPCTCGKALRLQQKAERAKIVKFLAGLNESYAIIRRQVIAKK 223
Query: 120 LSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEY 179
+ PS L E + Q QQ N +A A S+ + C Y
Sbjct: 224 ILPS--------LAEVYHIVDQDNSQQG--FSNVVAPPVAFQVSEVTVANIIDPTIC--Y 271
Query: 180 RHIIVNCAKKFCNYCKKPGHIIKEC 204
N + C++ + GHI + C
Sbjct: 272 VQNCPNKGRPMCSFYNRVGHIAERC 296
>gi|147770954|emb|CAN76244.1| hypothetical protein VITISV_023380 [Vitis vinifera]
Length = 454
Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 100/232 (43%), Gaps = 45/232 (19%)
Query: 4 IMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHL-----EYEIARYSQGDLSI 58
+ +V S+ + + +A ++WEYLK+ Y D K + E+E+ + + D ++
Sbjct: 63 LFAAVSPSIFIKIMKIDSAAEIWEYLKEEYKGDERIKNMQVMNLIREFEMKKMRESD-AV 121
Query: 59 QNYLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMN- 117
++Y + + ++ A V ++ + E + + L+ L +Y+A S+L N
Sbjct: 122 KDYAAQLLSI-ADKVRLLGKEFSNEKIV-----------QKILVTLPEKYEATISSLENS 169
Query: 118 RDLSPSLDVCFKELLR-----EEQRL---------ATQTILQQNKMHDNAIAYAAAHGKS 163
+DLS + ELL E++RL A Q +Q+N H N + KS
Sbjct: 170 KDLS---TISLTELLHSLEAVEQRRLMRQGDTAEGAFQARMQKNACHKNG---KVNNNKS 223
Query: 164 KGRDMRQ---VQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQ 209
G + + C CK+ H C CN C K GH+ + C + Q
Sbjct: 224 CGNNQKNGVFPPCPHCKKTNHSPQKCWWRPDVKCNKCGKQGHVERICKNQQQ 275
>gi|389608533|dbj|BAM17876.1| similar to CG3800 [Papilio xuthus]
Length = 144
Score = 44.3 bits (103), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 51/120 (42%), Gaps = 4/120 (3%)
Query: 95 SKRDQFLMKLRPE-YKAARSNLMNRDLSPSLDVCFK-ELLREEQRLATQTILQQNKMHDN 152
+ RD + R + +K R+ RD D C++ R Q+ + + + N
Sbjct: 25 ASRDTGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCN 84
Query: 153 AIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNC--AKKFCNYCKKPGHIIKECPTRPQN 210
+ A + GRD C++C + HI NC K C C KPGHI ++C +N
Sbjct: 85 KTGHIARNCPEGGRDSSGQTCYTCNKAGHISRNCPDGTKTCYVCGKPGHISRDCDESERN 144
>gi|147769672|emb|CAN73953.1| hypothetical protein VITISV_025588 [Vitis vinifera]
Length = 715
Score = 44.3 bits (103), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 75/189 (39%), Gaps = 39/189 (20%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQ-DNTAKCFHLEYEIARYSQG----D 55
MTW++ S+++ + N T +++WE ++Y+ N ++ F L ++ QG D
Sbjct: 29 MTWLVNSMEEDISSNYMYCPTTQELWENANQMYSDLGNQSQIFELTLKLGEIRQGEDNQD 88
Query: 56 LSIQNYLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRD----QFLMKLRPEYKAA 111
L + N W D + H+++ D +FL L E+
Sbjct: 89 LVLFNTYE-----WKSAEDGRH--------------HKKTMEDNRIFKFLAGLNVEFDEV 129
Query: 112 RSNLMNRDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHG---KSKGRDM 168
R ++ R PS+ F E+ REE R +N M + A G + G
Sbjct: 130 RGRIIRRQPLPSIGEVFSEVRREESR--------RNVMLGKKVPGVAIEGLALVTXGGGY 181
Query: 169 RQVQCFSCK 177
+V F CK
Sbjct: 182 NKVVAFQCK 190
>gi|147857338|emb|CAN79196.1| hypothetical protein VITISV_000238 [Vitis vinifera]
Length = 906
Score = 44.3 bits (103), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 64/122 (52%), Gaps = 11/122 (9%)
Query: 21 TAKDMWEYLKKVYNQ-DNTAKCFHLEYEIARYSQGDLSIQNYLSGIQNLWAK--YVDMIY 77
TAKD+W+ +++ Y++ + A+ + ++ + QG ++ Y++ ++ LW + + +I
Sbjct: 29 TAKDIWDAIQQTYSKARDAAQVYEVKVKTIVAKQGSKTVTKYVNQLKALWQELDHYRVIK 88
Query: 78 VQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRDLSPSLDVCFKE---LLRE 134
+ P E A ++ EQ + FL+ PE+ R ++ + P CF E L+R+
Sbjct: 89 TKYP-EDAAVLKDFIEQDRVYDFLVGFNPEFDQVRIQILGKQEVP----CFNEVVALIRD 143
Query: 135 EQ 136
E+
Sbjct: 144 EE 145
>gi|222612615|gb|EEE50747.1| hypothetical protein OsJ_31080 [Oryza sativa Japonica Group]
Length = 676
Score = 44.3 bits (103), Expect = 0.034, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 171 VQCFSCKEYRHIIVNCAK-KFCNYCKKPGHIIKECPTRPQNCQ 212
++C++C E+ H +V C K C CK GHI CPT +C+
Sbjct: 236 IKCYNCGEFGHHLVRCTKPSLCYVCKSSGHISSHCPTMMGSCK 278
>gi|242055077|ref|XP_002456684.1| hypothetical protein SORBIDRAFT_03g040841 [Sorghum bicolor]
gi|241928659|gb|EES01804.1| hypothetical protein SORBIDRAFT_03g040841 [Sorghum bicolor]
Length = 223
Score = 44.3 bits (103), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 1/103 (0%)
Query: 37 NTAKCFHLEYEIARYSQGDLSIQNYLSGIQNLWAKYVDMIYVQVP-IESLADVQGVHEQS 95
N +E + QG+ S+ Y++ +++LWA +++P E + V+ E+
Sbjct: 7 NVMLMVEIEDRLHDLKQGERSVMEYVAELKSLWADADHYKPIELPHSECVTWVKKWIEEK 66
Query: 96 KRDQFLMKLRPEYKAARSNLMNRDLSPSLDVCFKELLREEQRL 138
+ FL L PE++A RS + ++ PSLD + +EE RL
Sbjct: 67 RVIHFLRGLNPEFEARRSAIFHQPTLPSLDEAIAAISQEEYRL 109
>gi|322710166|gb|EFZ01741.1| hypothetical protein MAA_02970 [Metarhizium anisopliae ARSEF 23]
Length = 452
Score = 44.3 bits (103), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 165 GRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRP 208
G D +CF+C E H +C C YCKK GH+I++CP +P
Sbjct: 49 GNDDANNKCFNCGETGHRAADCPTPRDTACRYCKKEGHMIRDCPDKP 95
>gi|147804955|emb|CAN75815.1| hypothetical protein VITISV_004636 [Vitis vinifera]
Length = 1511
Score = 44.3 bits (103), Expect = 0.036, Method: Composition-based stats.
Identities = 38/164 (23%), Positives = 68/164 (41%), Gaps = 16/164 (9%)
Query: 7 SVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLSGIQ 66
SVD ++ +L+ YKT W K +Y D + + + I Q D+ + Y+ I
Sbjct: 618 SVDLKILHHLRAYKTCFKFWNQAKGLYTND-IQRLYKVASSIVNVRQQDMDLSTYIGQIA 676
Query: 67 NLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLM-----KLRPEYKAARSNLMNRDLS 121
+L ++ ++ P+ + Q + + D+F M LR + K R+ ++
Sbjct: 677 SLKEEFSTVM----PLTTDVGDQRI----QIDKFFMVLTLIGLRLDLKTVRNQILGSSSV 728
Query: 122 PSLDVCFKELL--REEQRLATQTILQQNKMHDNAIAYAAAHGKS 163
PSLD F L Q L + + +D+ + Y A S
Sbjct: 729 PSLDDVFARFLCISSTQTLPSDNTSDSSVEYDDYLRYQATKSAS 772
>gi|255608047|ref|XP_002538835.1| conserved hypothetical protein [Ricinus communis]
gi|223510211|gb|EEF23548.1| conserved hypothetical protein [Ricinus communis]
Length = 92
Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 89 QGVHEQSKRDQFLMKLRPEYKAARSNLMNRDLSPSLDVCFKELLREEQRLATQTILQQNK 148
Q +Q + QFLM LR E+++ R L+++ P+LDV EL+ EE RL +L ++
Sbjct: 17 QKARDQQRLFQFLMHLRLEFESIRGQLLHKSPLPTLDVALSELIAEEIRL---RVLGSSR 73
Query: 149 MHDNAIAYAAAHGKSKG 165
+ A AA +S
Sbjct: 74 SAEPATVLAAFGSRSSA 90
>gi|322698317|gb|EFY90088.1| zinc knuckle transcription factor (CnjB), putative [Metarhizium
acridum CQMa 102]
Length = 452
Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 165 GRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRP 208
G D +CF+C E H +C C YCKK GH+I++CP +P
Sbjct: 49 GNDDANNKCFNCGETGHRAADCPTPRDTACRYCKKEGHMIRDCPDKP 95
>gi|14475941|gb|AAK62788.1|AC027036_9 polyprotein, putative [Arabidopsis thaliana]
gi|18265373|dbj|BAB84015.1| polyprotein [Arabidopsis thaliana]
Length = 1466
Score = 44.3 bits (103), Expect = 0.038, Method: Composition-based stats.
Identities = 29/135 (21%), Positives = 61/135 (45%), Gaps = 12/135 (8%)
Query: 4 IMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLS 63
++G++ S+ + TA +WE L+K+Y + L ++ ++++G +I +Y+
Sbjct: 88 VLGAISMSVQPAVSRATTAAQIWETLRKIYANPSYGHVTQLRTQLKQWTKGTKTIDDYMQ 147
Query: 64 GIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRDLSPS 123
G L ++ + + P++ V+ V E L EYK + +D P+
Sbjct: 148 G---LVTRFDQLALLGKPMDHDEQVERVLEN---------LPEEYKPVIDQIAAKDTPPT 195
Query: 124 LDVCFKELLREEQRL 138
L + LL E ++
Sbjct: 196 LTEIHERLLNHESKI 210
>gi|14475946|gb|AAK62793.1|AC027036_14 polyprotein, putative [Arabidopsis thaliana]
gi|338746561|dbj|BAK41510.1| polyprotein [Arabidopsis thaliana]
Length = 1466
Score = 44.3 bits (103), Expect = 0.038, Method: Composition-based stats.
Identities = 29/135 (21%), Positives = 61/135 (45%), Gaps = 12/135 (8%)
Query: 4 IMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLS 63
++G++ S+ + TA +WE L+K+Y + L ++ ++++G +I +Y+
Sbjct: 88 VLGAISMSVQPAVSRATTAAQIWETLRKIYANPSYGHVTQLRTQLKQWTKGTKTIDDYMQ 147
Query: 64 GIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRDLSPS 123
G L ++ + + P++ V+ V E L EYK + +D P+
Sbjct: 148 G---LVTRFDQLALLGKPMDHDEQVERVLEN---------LPEEYKPVIDQIAAKDTPPT 195
Query: 124 LDVCFKELLREEQRL 138
L + LL E ++
Sbjct: 196 LTEIHERLLNHESKI 210
>gi|8778880|gb|AAF79879.1|AC000348_32 T7N9.5 [Arabidopsis thaliana]
Length = 1436
Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 82/208 (39%), Gaps = 28/208 (13%)
Query: 5 MGSVDQSLVLNLKPY--KTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYL 62
+G VD SL L+P + +W + N N + + LE + QG L + Y
Sbjct: 97 LGFVDGSL---LRPSVDDSTFRIWSRCNSMVN--NLPRRYQLEQAVMTLQQGKLDLSTYF 151
Query: 63 SGIQNLWAKYVDMIYVQV---PIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRD 119
+ + LW + + V + + ++ E S+ QFLM L ++ RS + N
Sbjct: 152 TKKKTLWEQLANTKSRSVKKCDCDQVKELLEEAETSRVIQFLMGLSDDFNTIRSQIFNMK 211
Query: 120 LSPSLDVCFKELLREE-QRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKE 178
P L+ + L ++E QRL + +AA S Q Q +
Sbjct: 212 PRPGLNEIYNMLDQDESQRL---------------VGFAAKSVPSPSPAAFQTQGVLNDQ 256
Query: 179 YRHIIV--NCAKKFCNYCKKPGHIIKEC 204
++ N K C +C + GH + +C
Sbjct: 257 NTILLAQGNFKKPKCTHCNRIGHTVDKC 284
>gi|126542349|gb|ABO16606.1| gag protein [Feline immunodeficiency virus]
gi|134284761|gb|ABO69457.1| gag [Feline immunodeficiency virus]
Length = 462
Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 73/166 (43%), Gaps = 19/166 (11%)
Query: 47 EIARYSQGDLSIQNYLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRP 106
E+ + G N G + +++++VD ++ Q+ ES Q V + K + P
Sbjct: 265 ELRKIRAGAPRAVNVKQGPKEIYSEFVDRLFKQIEAESAP--QDVKQYLKDSLSISNANP 322
Query: 107 EYKAARSNLMNRDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHG---KS 163
E K A S+L D ++ +R Q + + T + N M A+ +
Sbjct: 323 ECKRAMSHLRPEDK-------LEDKIRACQDIGS-TAYKMN-MLAQALQQVRVQQVQIRP 373
Query: 164 KGRDMRQ----VQCFSCKEYRHIIVNC-AKKFCNYCKKPGHIIKEC 204
KGR + ++CF+C + H+ NC A K CN C K GHI +C
Sbjct: 374 KGRKQQNRGGPLKCFNCGKIGHLARNCRAPKRCNKCGKSGHISTDC 419
>gi|147775979|emb|CAN73455.1| hypothetical protein VITISV_003293 [Vitis vinifera]
Length = 581
Score = 44.3 bits (103), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 57/248 (22%), Positives = 101/248 (40%), Gaps = 47/248 (18%)
Query: 4 IMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHL-----EYEIARYSQGDLSI 58
+ +V S+ + + +A ++WEYLK Y D + + E+E+ + + D ++
Sbjct: 73 LFAAVSPSIFIKIMKIDSAAEIWEYLKGEYKGDERIRNMQVMNLIREFEMKKMRESD-AV 131
Query: 59 QNYLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMN- 117
++Y + + ++ A V ++ + E + Q L+ L +Y+A S+L N
Sbjct: 132 KDYAAQLLSI-ADKVRLLGKEFSNEKIV-----------QQILVTLPEKYEATISSLENS 179
Query: 118 RDLSPSLDVCFKELLR-----EEQRL---------ATQTILQQNKMHDNAIAYAAAHGKS 163
+DLS + ELL E++RL A Q +Q+N H N +
Sbjct: 180 KDLS---TISLTELLHSLEAVEQRRLMRQGDTAEGAFQARMQKNAGHKNGKMNNNKPCNN 236
Query: 164 KGRDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN--------CQ 212
++ C CK+ H C CN C K GH+ + C + Q CQ
Sbjct: 237 NQKNGVFPPCPHCKKTNHSPQKCWWRPDVKCNKCGKQGHVERICKNQQQEETSAAVDYCQ 296
Query: 213 ASQAVVAS 220
Q A+
Sbjct: 297 EEQLFAAT 304
>gi|147841808|emb|CAN75434.1| hypothetical protein VITISV_027911 [Vitis vinifera]
Length = 1162
Score = 44.3 bits (103), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 64/139 (46%), Gaps = 15/139 (10%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVY-NQDNTAKCFHLEYEIARYSQGDLSIQ 59
M+W++ S+ + N Y AK++W+ K+ Y N +NT++ F +E + + QG+L+
Sbjct: 3 MSWLINSMTNDIGENFLLYGIAKEIWDAAKETYSNNENTSELFEVESVLHDFRQGELTQL 62
Query: 60 NYLSGIQNLWAKYVDMI-YVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNR 118
+ ++ W D I Y Q + E+ + +FL+ L R ++
Sbjct: 63 DLFE--EHNWTCPGDGIRYRQ-----------IIERKRIYKFLIGLNKNLDEVRGRILGS 109
Query: 119 DLSPSLDVCFKELLREEQR 137
++ F E+ REE R
Sbjct: 110 KPLLNIREAFSEVRREESR 128
>gi|77550934|gb|ABA93731.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 639
Score = 43.9 bits (102), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 66/140 (47%), Gaps = 2/140 (1%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYN-QDNTAKCFHLEYEIARYSQGDLSIQ 59
++W+M SV S+ ++ + A +W+ L +Y+ + N + ++ Q ++Q
Sbjct: 147 VSWLMTSVAPSIGRMIEAIQNAAVVWKTLSNMYSGEGNVMMMVEAQNKVENLKQEGRTVQ 206
Query: 60 NYLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKR-DQFLMKLRPEYKAARSNLMNR 118
Y S +Q LWA +Q+ E + Q +R FL L E++ R+ + ++
Sbjct: 207 EYASELQQLWADLDHYDPLQLKHEDDIVIGNKWLQRRRVIHFLKGLNKEFEDRRAAMFHQ 266
Query: 119 DLSPSLDVCFKELLREEQRL 138
P+++ +++EE RL
Sbjct: 267 ATLPTMEEAISAMMQEEMRL 286
>gi|912562|gb|AAB38057.1| gag polyprotein, partial [Human immunodeficiency virus 1]
Length = 462
Score = 43.9 bits (102), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
R+ R+++CF+C + H+ NC K+ C C + GH +KECP R N
Sbjct: 384 RNQRKIKCFNCSKEGHLARNCRAPRKRGCWKCGQEGHQMKECPGRQAN 431
>gi|912566|gb|AAB38059.1| gag polyprotein, partial [Human immunodeficiency virus 1]
Length = 462
Score = 43.9 bits (102), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
R+ R+++CF+C + H+ NC K+ C C + GH +KECP R N
Sbjct: 384 RNQRKIKCFNCGKEGHLARNCRAPRKRGCWKCGQEGHQMKECPGRQAN 431
>gi|912556|gb|AAB38054.1| gag polyprotein, partial [Human immunodeficiency virus 1]
Length = 462
Score = 43.9 bits (102), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
R+ R+++CF+C + H+ NC K+ C C + GH +KECP R N
Sbjct: 384 RNQRKIKCFNCGKEGHLARNCRAPRKRGCWKCGQEGHQMKECPGRQAN 431
>gi|282598114|gb|ADA83346.1| gag protein [Human immunodeficiency virus 1]
Length = 489
Score = 43.9 bits (102), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 162 KSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
+S R R ++CF+C + H+ NC KK C C K GH +K+CP R N
Sbjct: 373 RSNFRGQRTIKCFNCGKEGHLARNCKAPRKKGCWKCGKEGHQMKDCPERQAN 424
>gi|912554|gb|AAB38053.1| gag polyprotein, partial [Human immunodeficiency virus 1]
gi|912564|gb|AAB38058.1| gag polyprotein, partial [Human immunodeficiency virus 1]
Length = 462
Score = 43.9 bits (102), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
R+ R+++CF+C + H+ NC K+ C C + GH +KECP R N
Sbjct: 384 RNQRKIKCFNCGKEGHLARNCRAPRKRGCWKCGQEGHQMKECPGRQAN 431
>gi|158828152|gb|ABW81031.1| LTRGag-pol-polymerase 3 [Arabidopsis lyrata subsp. lyrata]
Length = 1296
Score = 43.9 bits (102), Expect = 0.048, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 3 WIMGSVDQSLVLN-LKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNY 61
WI G++ +S++ LK TA+++W ++ ++ + A+ LE E+ GDLS+ +Y
Sbjct: 76 WIYGTISESIIDTVLKKNSTARELWLAIETLFLDNKEARALQLENELRTMVIGDLSVHDY 135
Query: 62 LSGIQNL 68
++NL
Sbjct: 136 CKKMKNL 142
>gi|110288905|gb|ABB47203.2| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1050
Score = 43.9 bits (102), Expect = 0.049, Method: Composition-based stats.
Identities = 34/145 (23%), Positives = 62/145 (42%), Gaps = 15/145 (10%)
Query: 3 WIMGSV-DQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNY 61
W+ GSV D L + ++ +TA+D+W + ++ + + +L +E +QGD+ I +Y
Sbjct: 91 WLFGSVSDAILDVVMETDQTARDLWLAIDDLFQANKEPRTIYLSHEFHSMTQGDMPIADY 150
Query: 62 LSGIQNLWAKYVDMIYVQVPIESLADV-QGVHEQSKRDQFLMKLRPEYKAARSNLMNRDL 120
V+ ++L DV V E L L + + N+ + +
Sbjct: 151 CQK-------------VKTAADALRDVGHPVTESQLVLNLLSGLNSRFSSTADNIASAPV 197
Query: 121 SPSLDVCFKELLREEQRLATQTILQ 145
PS LL +E R+A +Q
Sbjct: 198 LPSFASAHNTLLLKELRIANAHKVQ 222
>gi|912574|gb|AAB38063.1| gag polyprotein, partial [Human immunodeficiency virus 1]
Length = 462
Score = 43.9 bits (102), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
R+ R+++CF+C + H+ NC K+ C C + GH +KECP R N
Sbjct: 384 RNQRKIKCFNCGKEGHLARNCRAPRKRGCWKCGQEGHQMKECPGRQAN 431
>gi|912570|gb|AAB38061.1| gag polyprotein, partial [Human immunodeficiency virus 1]
Length = 462
Score = 43.9 bits (102), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
R+ R+++CF+C + H+ NC K+ C C + GH +KECP R N
Sbjct: 384 RNQRKIKCFNCGKEGHLARNCRAPRKRGCWKCGQEGHQMKECPGRQAN 431
>gi|297737422|emb|CBI26623.3| unnamed protein product [Vitis vinifera]
Length = 1940
Score = 43.9 bits (102), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 105/241 (43%), Gaps = 47/241 (19%)
Query: 4 IMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHL-----EYEIARYSQGDLSI 58
+ +V S+ + + +A ++WEYLK+ Y D K + E+E+ + + D ++
Sbjct: 792 LFAAVSPSIFIKIMKIDSAAEIWEYLKEEYKGDERIKNMQVMNLIREFEMKKMRESD-AV 850
Query: 59 QNYLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMN- 117
++Y + + ++ A V ++ + E + + L+ L +Y+A S+L N
Sbjct: 851 KDYAAQLLSI-ADKVRLLGKEFSNEKIV-----------QKILVTLPEKYEATISSLENS 898
Query: 118 RDLSPSLDVCFKELLR-----EEQRL---------ATQTILQQNKMHDNAIAYAAAHGKS 163
+DLS + ELL E++RL A Q +Q+N H N + KS
Sbjct: 899 KDLS---TISLTELLHSLEAVEQRRLMRQGDTAEGAFQARMQKNAGHKNG---KVNNNKS 952
Query: 164 KGRDMRQ---VQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQNCQASQAV 217
G + + C CK+ H C CN C K GH+ + C + Q + + AV
Sbjct: 953 CGNNQKNGVFPPCPHCKKTNHSPKKCWWRPDVKCNKCGKQGHVERICKNQQQ--EETNAV 1010
Query: 218 V 218
V
Sbjct: 1011 V 1011
>gi|20042970|gb|AAM08778.1|AC016780_8 Hypothetical protein [Oryza sativa]
gi|31432088|gb|AAP53773.1| Zinc knuckle family protein [Oryza sativa Japonica Group]
gi|125574800|gb|EAZ16084.1| hypothetical protein OsJ_31529 [Oryza sativa Japonica Group]
Length = 800
Score = 43.9 bits (102), Expect = 0.050, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 161 GKSKGRDMRQVQCFSCKEYRHIIVNCAKK-FCNYCKKPGHIIKECP 205
G+S +++CF+C E + VNC K C CK PGHI CP
Sbjct: 242 GRSGPSQKEEIKCFNCGESGYHQVNCQKPPLCYVCKNPGHISSHCP 287
>gi|402694377|gb|AFQ90122.1| gag polyprotein, partial [Equine infectious anemia virus]
Length = 488
Score = 43.9 bits (102), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 66/172 (38%), Gaps = 27/172 (15%)
Query: 54 GDLSIQNYLSGIQNLWAKYVDMIYVQVPIES--------LADVQGVHEQSKRDQFLMK-L 104
G QN G + + +VD + Q+ E L D + ++ + M+ L
Sbjct: 271 GKPKAQNIRQGPKEPYPDFVDRLLSQIKSEGHPSEITKFLTDTLTIQNANEECKTAMRHL 330
Query: 105 RPEYKAARSNLMNRDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSK 164
RPE RD+ TQ ++ + + +A G K
Sbjct: 331 RPEDTLEEKLYACRDIG----------------TTTQKMMLLARALQSGLAGPMNGGTFK 374
Query: 165 GRDMRQVQ-CFSCKEYRHIIVNC-AKKFCNYCKKPGHIIKECPTRPQNCQAS 214
G ++ Q C++C + H+ C A K C CK+PGH K+C P+N +
Sbjct: 375 GGPLKAKQTCYNCGKPGHLSSQCRAPKVCFKCKEPGHFSKQCRNAPKNGRTG 426
>gi|21671985|gb|AAM74347.1|AC115686_14 Putative retroelement [Oryza sativa Japonica Group]
Length = 1250
Score = 43.9 bits (102), Expect = 0.052, Method: Composition-based stats.
Identities = 34/145 (23%), Positives = 62/145 (42%), Gaps = 15/145 (10%)
Query: 3 WIMGSV-DQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNY 61
W+ GSV D L + ++ +TA+D+W + ++ + + +L +E +QGD+ I +Y
Sbjct: 91 WLFGSVSDAILDVVMETDQTARDLWLAIDDLFQANKEPRTIYLSHEFHSMTQGDMPIADY 150
Query: 62 LSGIQNLWAKYVDMIYVQVPIESLADV-QGVHEQSKRDQFLMKLRPEYKAARSNLMNRDL 120
V+ ++L DV V E L L + + N+ + +
Sbjct: 151 CQK-------------VKTAADALRDVGHPVTESQLVLNLLSGLNSRFSSTADNIASAPV 197
Query: 121 SPSLDVCFKELLREEQRLATQTILQ 145
PS LL +E R+A +Q
Sbjct: 198 LPSFASAHNTLLLKELRIANAHKVQ 222
>gi|23477804|gb|AAN34944.1| Putative retroelement [Oryza sativa Japonica Group]
Length = 1146
Score = 43.9 bits (102), Expect = 0.053, Method: Composition-based stats.
Identities = 34/145 (23%), Positives = 62/145 (42%), Gaps = 15/145 (10%)
Query: 3 WIMGSV-DQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNY 61
W+ GSV D L + ++ +TA+D+W + ++ + + +L +E +QGD+ I +Y
Sbjct: 91 WLFGSVSDAILDVVMETDQTARDLWLAIDDLFQANKEPRTIYLSHEFHSMTQGDMPIADY 150
Query: 62 LSGIQNLWAKYVDMIYVQVPIESLADV-QGVHEQSKRDQFLMKLRPEYKAARSNLMNRDL 120
V+ ++L DV V E L L + + N+ + +
Sbjct: 151 CQK-------------VKTAADALRDVGHPVTESQLVLNLLSGLNSRFSSTADNIASAPV 197
Query: 121 SPSLDVCFKELLREEQRLATQTILQ 145
PS LL +E R+A +Q
Sbjct: 198 LPSFASAHNTLLLKELRIANAHKVQ 222
>gi|449547240|gb|EMD38208.1| hypothetical protein CERSUDRAFT_113357 [Ceriporiopsis subvermispora
B]
Length = 673
Score = 43.5 bits (101), Expect = 0.054, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 7/45 (15%)
Query: 172 QCFSCKEYRHIIVNCAKK-------FCNYCKKPGHIIKECPTRPQ 209
+C C+ H I +C + CN CK+PGH +++CPT+ Q
Sbjct: 347 KCKICESTDHFISDCPDRAKPREGYICNICKEPGHFVRDCPTKHQ 391
>gi|339786565|gb|AEK11449.1| gag protein [Human immunodeficiency virus 1]
Length = 500
Score = 43.5 bits (101), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + HI NC KK C C K GH +K+C RP N
Sbjct: 384 RTVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERPAN 428
>gi|259126537|gb|ACV94239.1| gag protein [Human immunodeficiency virus 1]
gi|259126555|gb|ACV94247.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 43.5 bits (101), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Query: 152 NAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRP 208
NA A G KG+ R+++CF+C + H+ NC KK C C K GH +KEC R
Sbjct: 372 NAAAVMMQRGNFKGQ--RRIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKECTERQ 429
Query: 209 QN 210
N
Sbjct: 430 AN 431
>gi|147771552|emb|CAN71553.1| hypothetical protein VITISV_034738 [Vitis vinifera]
Length = 1312
Score = 43.5 bits (101), Expect = 0.057, Method: Composition-based stats.
Identities = 37/165 (22%), Positives = 69/165 (41%), Gaps = 17/165 (10%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
++WI S+ ++ + +T+ + W L++ ++ A+ L +G L++
Sbjct: 89 LSWIYSSLTPEVMGQIVGLQTSHEAWTALQRSFSASTKARTMQLRLAFQTTKKGSLTMME 148
Query: 61 YLSGIQNLWAKYVDMIYVQVPIESLADV-QGVHEQSKRDQFLMKLRPEYKAARSNLMNRD 119
Y+ ++++ +SLA + + V E+ + Q L L EY ++L RD
Sbjct: 149 YIQKLKHI-------------SDSLAAIGEPVPEKDQILQLLSGLGAEYNPIVASLTARD 195
Query: 120 LSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSK 164
L LL EQRL QT + D IA H + +
Sbjct: 196 DDIQLHAVHSILLTHEQRLHLQTTXTE---EDLLIANFXTHNRPR 237
>gi|323775|gb|AAA43011.1| gag [Equine infectious anemia virus]
Length = 512
Score = 43.5 bits (101), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 65/168 (38%), Gaps = 27/168 (16%)
Query: 54 GDLSIQNYLSGIQNLWAKYVDMIYVQVPIES--------LADVQGVHEQSKRDQFLMK-L 104
G QN G + + ++VD + Q+ E L D + ++ + M+ L
Sbjct: 296 GKPKAQNIRQGAKEPYPEFVDRLLSQIKSEGHPQEISKFLTDTLTIQNANEECRNAMRHL 355
Query: 105 RPEYKAARSNLMNRDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSK 164
RPE RD+ Q ++ K +A G K
Sbjct: 356 RPEDTLEEKMYACRDIG----------------TTKQKMMLLAKALQTGLAGPFKGGALK 399
Query: 165 GRDMRQVQ-CFSCKEYRHIIVNC-AKKFCNYCKKPGHIIKECPTRPQN 210
G ++ Q C++C + H+ C A K C CK+PGH K+C + P+N
Sbjct: 400 GGPLKAAQTCYNCGKPGHLSSQCRAPKVCFKCKQPGHFSKQCRSVPKN 447
>gi|259126560|gb|ACV94249.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 43.5 bits (101), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Query: 152 NAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRP 208
NA A G KG+ R+++CF+C + H+ NC KK C C K GH +KEC R
Sbjct: 372 NAAAIMMQRGNFKGQ--RRIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKECTERQ 429
Query: 209 QN 210
N
Sbjct: 430 AN 431
>gi|403406148|dbj|BAM42650.1| Polyprotein [Arabidopsis thaliana]
Length = 1475
Score = 43.5 bits (101), Expect = 0.058, Method: Composition-based stats.
Identities = 29/135 (21%), Positives = 61/135 (45%), Gaps = 12/135 (8%)
Query: 4 IMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLS 63
I+G++ S+ + TA +WE L+K+Y + L ++ ++++G +I +Y+
Sbjct: 88 ILGAISMSVQPAVSRATTAAQIWETLRKIYANPSYGHVTQLRTQLKQWTKGAKTIDDYMQ 147
Query: 64 GIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRDLSPS 123
G ++ + + P++ V+ V E L +YK + +D PS
Sbjct: 148 G---FITRFDQLALLGKPMDHDEQVERVLEN---------LPDDYKPVIDQIAAKDTPPS 195
Query: 124 LDVCFKELLREEQRL 138
L + L+ +E +L
Sbjct: 196 LTEIHERLINQESKL 210
>gi|403406146|dbj|BAM42649.1| Polyprotein [Arabidopsis thaliana]
Length = 1475
Score = 43.5 bits (101), Expect = 0.058, Method: Composition-based stats.
Identities = 29/135 (21%), Positives = 61/135 (45%), Gaps = 12/135 (8%)
Query: 4 IMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLS 63
I+G++ S+ + TA +WE L+K+Y + L ++ ++++G +I +Y+
Sbjct: 88 ILGAISMSVQPAVSRATTAAQIWETLRKIYANPSYGHVTQLRTQLKQWTKGAKTIDDYMQ 147
Query: 64 GIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRDLSPS 123
G ++ + + P++ V+ V E L +YK + +D PS
Sbjct: 148 G---FITRFDQLALLGKPMDHDEQVERVLEN---------LPDDYKPVIDQIAAKDTPPS 195
Query: 124 LDVCFKELLREEQRL 138
L + L+ +E +L
Sbjct: 196 LTEIHERLINQESKL 210
>gi|404433802|dbj|BAM44535.1| polyprotein [Arabidopsis thaliana]
Length = 1475
Score = 43.5 bits (101), Expect = 0.058, Method: Composition-based stats.
Identities = 29/135 (21%), Positives = 61/135 (45%), Gaps = 12/135 (8%)
Query: 4 IMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLS 63
I+G++ S+ + TA +WE L+K+Y + L ++ ++++G +I +Y+
Sbjct: 88 ILGAISMSVQPAVSRATTAAQIWETLRKIYANPSYGHVTQLRTQLKQWTKGAKTIDDYMQ 147
Query: 64 GIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRDLSPS 123
G ++ + + P++ V+ V E L +YK + +D PS
Sbjct: 148 G---FITRFDQLALLGKPMDHDEQVERVLEN---------LPDDYKPVIDQIAAKDTPPS 195
Query: 124 LDVCFKELLREEQRL 138
L + L+ +E +L
Sbjct: 196 LTEIHERLINQESKL 210
>gi|403406142|dbj|BAM42647.1| polyprotein [Arabidopsis thaliana]
gi|403406144|dbj|BAM42648.1| polyprotein [Arabidopsis thaliana]
Length = 1475
Score = 43.5 bits (101), Expect = 0.058, Method: Composition-based stats.
Identities = 29/135 (21%), Positives = 61/135 (45%), Gaps = 12/135 (8%)
Query: 4 IMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLS 63
I+G++ S+ + TA +WE L+K+Y + L ++ ++++G +I +Y+
Sbjct: 88 ILGAISMSVQPAVSRATTAAQIWETLRKIYANPSYGHVTQLRTQLKQWTKGAKTIDDYMQ 147
Query: 64 GIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRDLSPS 123
G ++ + + P++ V+ V E L +YK + +D PS
Sbjct: 148 G---FITRFDQLALLGKPMDHDEQVERVLEN---------LPDDYKPVIDQIAAKDTPPS 195
Query: 124 LDVCFKELLREEQRL 138
L + L+ +E +L
Sbjct: 196 LTEIHERLINQESKL 210
>gi|404433800|dbj|BAM44534.1| polyprotein [Arabidopsis thaliana]
Length = 1475
Score = 43.5 bits (101), Expect = 0.059, Method: Composition-based stats.
Identities = 29/135 (21%), Positives = 61/135 (45%), Gaps = 12/135 (8%)
Query: 4 IMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLS 63
I+G++ S+ + TA +WE L+K+Y + L ++ ++++G +I +Y+
Sbjct: 88 ILGAISMSVQPAVSRATTAAQIWETLRKIYANPSYGHVTQLRTQLKQWTKGAKTIDDYMQ 147
Query: 64 GIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRDLSPS 123
G ++ + + P++ V+ V E L +YK + +D PS
Sbjct: 148 G---FITRFDQLALLGKPMDHDEQVERVLEN---------LPDDYKPVIDQIAAKDTPPS 195
Query: 124 LDVCFKELLREEQRL 138
L + L+ +E +L
Sbjct: 196 LTEIHERLINQESKL 210
>gi|9626531|ref|NP_056901.1| gag protein [Equine infectious anemia virus]
gi|62288102|sp|P69730.1|GAG_EIAV9 RecName: Full=Gag polyprotein; Contains: RecName: Full=Matrix
protein p15; Short=MA; Contains: RecName: Full=Capsid
protein p26; Short=CA; Contains: RecName: Full=p1;
Contains: RecName: Full=Nucleocapsid protein p11;
Short=NC; Contains: RecName: Full=p9
gi|62288103|sp|P69731.1|GAG_EIAVC RecName: Full=Gag polyprotein; Contains: RecName: Full=Matrix
protein p15; Short=MA; Contains: RecName: Full=Capsid
protein p26; Short=CA; Contains: RecName: Full=p1;
Contains: RecName: Full=Nucleocapsid protein p11;
Short=NC; Contains: RecName: Full=p9
gi|62288104|sp|P69732.1|GAG_EIAVY RecName: Full=Gag polyprotein; Contains: RecName: Full=Matrix
protein p15; Short=MA; Contains: RecName: Full=Capsid
protein p26; Short=CA; Contains: RecName: Full=p1;
Contains: RecName: Full=Nucleocapsid protein p11;
Short=NC; Contains: RecName: Full=p9
gi|9944517|gb|AAG02701.1|AF247394_1 gag protein [Equine infectious anemia virus]
gi|290628|gb|AAA43003.1| gag protein [Equine infectious anemia virus]
gi|323837|gb|AAB59861.1| gag protein [Equine infectious anemia virus]
gi|2801511|gb|AAC82599.1| gag protein [Equine infectious anemia virus]
gi|2905987|gb|AAC03760.1| gag polyprotein [Equine infectious anemia virus]
gi|3248894|gb|AAC24014.1| gag polyprotein [Equine infectious anemia virus]
gi|3248901|gb|AAC24020.1| gag polyprotein [Equine infectious anemia virus]
gi|89954445|gb|ABD83644.1| codon usage optimized EIAV-gag protein [synthetic construct]
Length = 486
Score = 43.5 bits (101), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 66/168 (39%), Gaps = 27/168 (16%)
Query: 54 GDLSIQNYLSGIQNLWAKYVDMIYVQVPIES--------LADVQGVHEQSKRDQFLMK-L 104
G QN G + + ++VD + Q+ E L D + ++ + M+ L
Sbjct: 270 GKPKAQNIRQGAKEPYPEFVDRLLSQIKSEGHPQEISKFLTDTLTIQNANEECRNAMRHL 329
Query: 105 RPEYKAARSNLMNRDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSK 164
RPE RD+ + Q ++ K +A G K
Sbjct: 330 RPEDTLEEKMYACRDIGTT----------------KQKMMLLAKALQTGLAGPFKGGALK 373
Query: 165 GRDMRQVQ-CFSCKEYRHIIVNC-AKKFCNYCKKPGHIIKECPTRPQN 210
G ++ Q C++C + H+ C A K C CK+PGH K+C + P+N
Sbjct: 374 GGPLKAAQTCYNCGKPGHLSSQCRAPKVCFKCKQPGHFSKQCRSVPKN 421
>gi|4996367|dbj|BAA78426.1| polyprotein [Arabidopsis thaliana]
Length = 1475
Score = 43.5 bits (101), Expect = 0.059, Method: Composition-based stats.
Identities = 29/135 (21%), Positives = 61/135 (45%), Gaps = 12/135 (8%)
Query: 4 IMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLS 63
I+G++ S+ + TA +WE L+K+Y + L ++ ++++G +I +Y+
Sbjct: 88 ILGAISMSVQPAVSRATTAAQIWETLRKIYANPSYGHVTQLRTQLKQWTKGAKTIDDYMQ 147
Query: 64 GIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRDLSPS 123
G ++ + + P++ V+ V E L +YK + +D PS
Sbjct: 148 G---FITRFDQLALLGKPMDHDEQVERVLEN---------LPDDYKPVIDQIAAKDTPPS 195
Query: 124 LDVCFKELLREEQRL 138
L + L+ +E +L
Sbjct: 196 LTEIHERLINQESKL 210
>gi|147856699|emb|CAN81355.1| hypothetical protein VITISV_039158 [Vitis vinifera]
Length = 1402
Score = 43.5 bits (101), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 67/147 (45%), Gaps = 14/147 (9%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
++WI S+ ++ + + ++ W L+K+++ + A+ L E +G +S+ +
Sbjct: 93 LSWIYSSLTPGIMAQIIGHNSSHSAWNALEKIFSSCSRARIMQLXLEFQSTKKGSMSMID 152
Query: 61 YLSGIQNLWAKYVDMIYVQVPIESLADV-QGVHEQSKRDQFLMKLRPEYKAARSNLMNRD 119
Y+ + V+ +SLA + + V EQ + L L +Y A + + R+
Sbjct: 153 YI-------------MKVKGAADSLAAIGEPVSEQDQIMNLLGGLGSDYNAVVTAINIRE 199
Query: 120 LSPSLDVCFKELLREEQRLATQTILQQ 146
SL+ LL EQRL Q ++Q
Sbjct: 200 DKISLEAVHSMLLAFEQRLEQQGSIEQ 226
>gi|147765955|emb|CAN59952.1| hypothetical protein VITISV_006720 [Vitis vinifera]
Length = 1365
Score = 43.5 bits (101), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 67/147 (45%), Gaps = 14/147 (9%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
++WI S+ ++ + + ++ W L+K+++ + A+ L E +G +S+ +
Sbjct: 93 LSWIYSSLTPGIMAQIIGHNSSHSAWNALEKIFSSCSRARIMQLRLEFQSTKKGSMSMID 152
Query: 61 YLSGIQNLWAKYVDMIYVQVPIESLADV-QGVHEQSKRDQFLMKLRPEYKAARSNLMNRD 119
Y+ + V+ +SLA + + V EQ + L L +Y A + + R+
Sbjct: 153 YI-------------MKVKGAADSLAAIGEPVSEQDQIMNLLGGLGSDYNAVVTAINIRE 199
Query: 120 LSPSLDVCFKELLREEQRLATQTILQQ 146
SL+ LL EQRL Q ++Q
Sbjct: 200 DKISLEAVHSMLLAFEQRLEQQGSIEQ 226
>gi|403406140|dbj|BAM42646.1| polyprotein [Arabidopsis thaliana]
Length = 1475
Score = 43.5 bits (101), Expect = 0.061, Method: Composition-based stats.
Identities = 29/135 (21%), Positives = 61/135 (45%), Gaps = 12/135 (8%)
Query: 4 IMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLS 63
I+G++ S+ + TA +WE L+K+Y + L ++ ++++G +I +Y+
Sbjct: 88 ILGAISMSVQPAVSRATTAAQIWETLRKIYANPSYGHVTQLRTQLKQWTKGAKTIDDYMQ 147
Query: 64 GIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRDLSPS 123
G ++ + + P++ V+ V E L +YK + +D PS
Sbjct: 148 G---FITRFDQLALLGKPMDHDEQVERVLEN---------LPDDYKPVIDQIAAKDTPPS 195
Query: 124 LDVCFKELLREEQRL 138
L + L+ +E +L
Sbjct: 196 LTEIHERLINQESKL 210
>gi|300244841|gb|ADJ93853.1| gag polyprotein [Equine infectious anemia virus]
Length = 426
Score = 43.5 bits (101), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 67/160 (41%), Gaps = 11/160 (6%)
Query: 54 GDLSIQNYLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARS 113
G QN G + + +VD + QV +S G+ + + E KAA
Sbjct: 270 GKPKAQNIRQGPKEPYPDFVDRLLSQV--KSEGHPSGITKFLTDTLTIQNANEECKAAMR 327
Query: 114 NLMNRD-LSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQ 172
+L D L L C +++ + LQ + +A + G KG ++ Q
Sbjct: 328 HLRPEDTLEEKLYACRDIGTTKQKMMLLARALQ------SGLAGSMKGGICKGGPLKAPQ 381
Query: 173 -CFSCKEYRHIIVNC-AKKFCNYCKKPGHIIKECPTRPQN 210
C++C + H+ C A K C CK+PGH K+C P+N
Sbjct: 382 TCYNCGKPGHLSSQCRAPKVCFKCKQPGHFSKQCRNAPKN 421
>gi|147788526|emb|CAN65302.1| hypothetical protein VITISV_002195 [Vitis vinifera]
Length = 581
Score = 43.5 bits (101), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 57/248 (22%), Positives = 102/248 (41%), Gaps = 47/248 (18%)
Query: 4 IMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHL-----EYEIARYSQGDLSI 58
+ +V S+ + + +A ++WEYLK+ Y D K + E+E+ + + D+ +
Sbjct: 73 LFAAVSPSIFIKIMKIDSAAEIWEYLKEEYKGDERIKNMQVMNLIREFEMKKMRESDV-V 131
Query: 59 QNYLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMN- 117
++Y + + ++ A V ++ + E + + L+ L +Y+A S+L N
Sbjct: 132 KDYAAQLLSI-ADKVRLLGKEFSNEKIV-----------QKILVTLPEKYEATISSLENS 179
Query: 118 RDLSPSLDVCFKELLR-----EEQRL---------ATQTILQQNKMHDNAIAYAAAHGKS 163
+DLS + ELL E++RL A Q +Q+N H N +
Sbjct: 180 KDLS---TISLTELLHSLEAVEQRRLMRQGDTTEGAFQARMQKNAGHKNGKMNNNKPCSN 236
Query: 164 KGRDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN--------CQ 212
++ C CK+ H C CN C K GH+ + C + Q CQ
Sbjct: 237 NQKNGVFPPCPHCKKTNHSPQKCWWRPDVKCNKCGKQGHVERICKNQQQEETSAAVDYCQ 296
Query: 213 ASQAVVAS 220
Q A+
Sbjct: 297 EEQLFAAT 304
>gi|20043011|gb|AAM08819.1|AC090486_29 Putative retroelement [Oryza sativa Japonica Group]
gi|110288882|gb|ABB47173.2| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1265
Score = 43.5 bits (101), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 171 VQCFSCKEYRHIIVNCAK-KFCNYCKKPGHIIKECPTRPQNCQ 212
++C++C E+ H +V C K C CK GHI CPT +C+
Sbjct: 244 IKCYNCGEFGHHLVRCTKPSLCYVCKSSGHISSHCPTMMGSCK 286
>gi|404433796|dbj|BAM44532.1| polyprotein [Arabidopsis thaliana]
Length = 1421
Score = 43.5 bits (101), Expect = 0.063, Method: Composition-based stats.
Identities = 29/135 (21%), Positives = 61/135 (45%), Gaps = 12/135 (8%)
Query: 4 IMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLS 63
I+G++ S+ + TA +WE L+K+Y + L ++ ++++G +I +Y+
Sbjct: 88 ILGAISMSVQPAVSRATTAAQIWETLRKIYANPSYGHVTQLRTQLKQWTKGAKTIDDYMQ 147
Query: 64 GIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRDLSPS 123
G ++ + + P++ V+ V E L +YK + +D PS
Sbjct: 148 G---FITRFDQLALLGKPMDHDEQVERVLEN---------LPDDYKPVIDQIAAKDTPPS 195
Query: 124 LDVCFKELLREEQRL 138
L + L+ +E +L
Sbjct: 196 LTEIHERLINQESKL 210
>gi|404433792|dbj|BAM44530.1| polyprotein [Arabidopsis thaliana]
Length = 1421
Score = 43.5 bits (101), Expect = 0.063, Method: Composition-based stats.
Identities = 29/135 (21%), Positives = 61/135 (45%), Gaps = 12/135 (8%)
Query: 4 IMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLS 63
I+G++ S+ + TA +WE L+K+Y + L ++ ++++G +I +Y+
Sbjct: 88 ILGAISMSVQPAVSRATTAAQIWETLRKIYANPSYGHVTQLRTQLKQWTKGAKTIDDYMQ 147
Query: 64 GIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRDLSPS 123
G ++ + + P++ V+ V E L +YK + +D PS
Sbjct: 148 G---FITRFDQLALLGKPMDHDEQVERVLEN---------LPDDYKPVIDQIAAKDTPPS 195
Query: 124 LDVCFKELLREEQRL 138
L + L+ +E +L
Sbjct: 196 LTEIHERLINQESKL 210
>gi|218184522|gb|EEC66949.1| hypothetical protein OsI_33586 [Oryza sativa Indica Group]
Length = 715
Score = 43.5 bits (101), Expect = 0.063, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 161 GKSKGRDMRQVQCFSCKEYRHIIVNCAKK-FCNYCKKPGHIIKECP 205
G+S +++CF+C E + VNC K C CK PGHI CP
Sbjct: 242 GRSGPSQKEEIKCFNCGESGYHQVNCQKPPLCYVCKNPGHISSHCP 287
>gi|147810735|emb|CAN74101.1| hypothetical protein VITISV_039542 [Vitis vinifera]
Length = 1265
Score = 43.5 bits (101), Expect = 0.064, Method: Composition-based stats.
Identities = 42/203 (20%), Positives = 75/203 (36%), Gaps = 49/203 (24%)
Query: 7 SVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLSGIQ 66
SVD ++L+L+ YKT W K +Y + D+ + Y+ I
Sbjct: 78 SVDPKILLHLRAYKTCFKFWNXXKGLYTNE------------------DMDLSTYIGQIA 119
Query: 67 NLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLM-----KLRPEYKAARSNLMNRDLS 121
+L +++ ++ + + ++++ D+F M LR + AR ++
Sbjct: 120 SLKEEFLTVMPLTTDVGD--------QRTQIDKFFMVLTLIGLRLDLXTARDQILGSSSV 171
Query: 122 PSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRH 181
PSLD F LLR +TQT+ N + + + + + Q
Sbjct: 172 PSLDDVFARLLRIS---STQTLPSDNTSDSSVLVSQTSSRGGXSGNRGRGQ--------- 219
Query: 182 IIVNCAKKFCNYCKKPGHIIKEC 204
+ C YC K GH C
Sbjct: 220 ------RPHCTYCNKLGHTRDRC 236
>gi|147781105|emb|CAN64972.1| hypothetical protein VITISV_025928 [Vitis vinifera]
Length = 570
Score = 43.5 bits (101), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 57/248 (22%), Positives = 102/248 (41%), Gaps = 47/248 (18%)
Query: 4 IMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHL-----EYEIARYSQGDLSI 58
+ +V S+ + + +A ++WEYLK+ Y D K + E+E+ + + D ++
Sbjct: 73 LFAAVSPSIFIKIMKIDSAAEIWEYLKEEYKGDERIKNMQVMNLIREFEMKKMRESD-AV 131
Query: 59 QNYLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMN- 117
++Y + + ++ A V ++ + E + + L+ L +Y+A S+L N
Sbjct: 132 KDYAAQLLSI-ADKVRLLGKEFSNEKIV-----------QKILVTLPEKYEATISSLENS 179
Query: 118 RDLSPSLDVCFKELLR-----EEQRL---------ATQTILQQNKMHDNAIAYAAAHGKS 163
+DLS + ELL E++RL A Q +Q+N H N +
Sbjct: 180 KDLS---TISLTELLHSLEVVEQRRLMRQGDTTEGAFQARMQKNAGHKNGKMNNNKPCSN 236
Query: 164 KGRDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN--------CQ 212
++ C CK+ H C CN C K GH+ + C + Q CQ
Sbjct: 237 NQKNGVFPPCPHCKKTNHSPQKCWWRPDVKCNKCGKQGHVERICKNQQQEETSAAVDYCQ 296
Query: 213 ASQAVVAS 220
Q A+
Sbjct: 297 EEQLFAAT 304
>gi|20303616|gb|AAM19043.1|AC099774_5 putative reverse transcriptase [Oryza sativa Japonica Group]
Length = 1259
Score = 43.5 bits (101), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 171 VQCFSCKEYRHIIVNCAK-KFCNYCKKPGHIIKECPTRPQNCQ 212
++C++C E+ H +V C K C CK GHI CPT +C+
Sbjct: 244 IKCYNCGEFGHHLVRCTKPSLCYVCKSSGHISSHCPTMMGSCK 286
>gi|4996369|dbj|BAA78427.1| polyprotein [Arabidopsis thaliana]
Length = 1421
Score = 43.5 bits (101), Expect = 0.065, Method: Composition-based stats.
Identities = 29/135 (21%), Positives = 61/135 (45%), Gaps = 12/135 (8%)
Query: 4 IMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLS 63
I+G++ S+ + TA +WE L+K+Y + L ++ ++++G +I +Y+
Sbjct: 88 ILGAISMSVQPAVSRATTAAQIWETLRKIYANPSYGHVTQLRTQLKQWTKGAKTIDDYMQ 147
Query: 64 GIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRDLSPS 123
G ++ + + P++ V+ V E L +YK + +D PS
Sbjct: 148 G---FITRFDQLALLGKPMDHDEQVERVLEN---------LPDDYKPVIDQIAAKDTPPS 195
Query: 124 LDVCFKELLREEQRL 138
L + L+ +E +L
Sbjct: 196 LTEIHERLINQESKL 210
>gi|404433794|dbj|BAM44531.1| polyprotein [Arabidopsis thaliana]
Length = 1421
Score = 43.5 bits (101), Expect = 0.065, Method: Composition-based stats.
Identities = 29/135 (21%), Positives = 61/135 (45%), Gaps = 12/135 (8%)
Query: 4 IMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLS 63
I+G++ S+ + TA +WE L+K+Y + L ++ ++++G +I +Y+
Sbjct: 88 ILGAISMSVQPAVSRATTAAQIWETLRKIYANPSYGHVTQLRTQLKQWTKGAKTIDDYMQ 147
Query: 64 GIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRDLSPS 123
G ++ + + P++ V+ V E L +YK + +D PS
Sbjct: 148 G---FITRFDQLALLGKPMDHDEQVERVLEN---------LPDDYKPVIDQIAAKDTPPS 195
Query: 124 LDVCFKELLREEQRL 138
L + L+ +E +L
Sbjct: 196 LTEIHERLINQESKL 210
>gi|404433790|dbj|BAM44529.1| polyprotein [Arabidopsis thaliana]
Length = 1421
Score = 43.5 bits (101), Expect = 0.065, Method: Composition-based stats.
Identities = 29/135 (21%), Positives = 61/135 (45%), Gaps = 12/135 (8%)
Query: 4 IMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLS 63
I+G++ S+ + TA +WE L+K+Y + L ++ ++++G +I +Y+
Sbjct: 88 ILGAISMSVQPAVSRATTAAQIWETLRKIYANPSYGHVTQLRTQLKQWTKGAKTIDDYMQ 147
Query: 64 GIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRDLSPS 123
G ++ + + P++ V+ V E L +YK + +D PS
Sbjct: 148 G---FITRFDQLALLGKPMDHDEQVERVLEN---------LPDDYKPVIDQIAAKDTPPS 195
Query: 124 LDVCFKELLREEQRL 138
L + L+ +E +L
Sbjct: 196 LTEIHERLINQESKL 210
>gi|147797712|emb|CAN76346.1| hypothetical protein VITISV_024039 [Vitis vinifera]
Length = 571
Score = 43.5 bits (101), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 57/248 (22%), Positives = 102/248 (41%), Gaps = 47/248 (18%)
Query: 4 IMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHL-----EYEIARYSQGDLSI 58
+ +V S+ + + +A ++WEYLK+ Y D K + E+E+ + + D ++
Sbjct: 73 LFAAVSPSIFIKIMKIDSAAEIWEYLKEEYKGDERIKNMQVMNLIREFEMKKMRESD-AV 131
Query: 59 QNYLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMN- 117
++Y + + ++ A V ++ + E + + L+ L +Y+A S+L N
Sbjct: 132 KDYAAQLLSI-ADKVRLLGKEFSNEKIV-----------QKILVTLPEKYEATISSLENS 179
Query: 118 RDLSPSLDVCFKELLR-----EEQRL---------ATQTILQQNKMHDNAIAYAAAHGKS 163
+DLS + ELL E++RL A Q +Q+N H N +
Sbjct: 180 KDLS---TISLTELLHSLEAVEQRRLMRQGDTTEGAFQARMQKNAGHKNGKMNNNKPCSN 236
Query: 164 KGRDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN--------CQ 212
++ C CK+ H C CN C K GH+ + C + Q CQ
Sbjct: 237 NQKNGVFPPCPHCKKTNHSPQKCWWRPDVKCNKCGKQGHVERICKNQQQEETSAAVDYCQ 296
Query: 213 ASQAVVAS 220
Q A+
Sbjct: 297 EEQLFAAT 304
>gi|147798588|emb|CAN74390.1| hypothetical protein VITISV_023272 [Vitis vinifera]
Length = 568
Score = 43.5 bits (101), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 59/243 (24%), Positives = 103/243 (42%), Gaps = 48/243 (19%)
Query: 4 IMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHL-----EYEIARYSQGDLSI 58
+ +V S+ + + +A ++WEYLK+ Y D K + E+E+ + + D ++
Sbjct: 49 LFAAVSPSIFIKIMKIDSAAEIWEYLKEEYKGDERIKNMQVMNLIREFEMKKMRESD-AV 107
Query: 59 QNYLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMN- 117
++Y + + ++ A V ++ + E + + L+ L +Y+A S+L N
Sbjct: 108 KDYAAQLLSI-ADKVRLLGKEFSNEKIV-----------QKILVTLPEKYEATISSLENS 155
Query: 118 RDLSPSLDVCFKELLR-----EEQRL---------ATQTILQQNKMHDNAIAYAAAHGKS 163
+DLS + ELL E++RL Q +Q+N H N + KS
Sbjct: 156 KDLS---TISLTELLHSLEVVEQRRLMRQGDTAKGTFQARMQKNAGHKN----GKVNNKS 208
Query: 164 KGRDMRQ---VQCFSCKEYRHIIVNCAKKF---CNYCKKPGHIIKECPTRPQNCQASQAV 217
G + + C CK+ H C + CN C K GH +E CQ Q
Sbjct: 209 CGNNQKNGVFPPCPHCKKTNHSPQKCWWRPDVKCNKCGKQGH--EETSAAVDYCQEEQLF 266
Query: 218 VAS 220
VA+
Sbjct: 267 VAT 269
>gi|147811713|emb|CAN65966.1| hypothetical protein VITISV_005935 [Vitis vinifera]
Length = 1154
Score = 43.5 bits (101), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 65/132 (49%), Gaps = 6/132 (4%)
Query: 3 WIMGSVDQSLVLNLKPYKTAKDMWEYLKKVY-NQDNTAKCFHLEYEIARYSQGDLSIQNY 61
W++ S+D LV N + AK +W+ + Y + +T++ + L+ + R Q SI+ Y
Sbjct: 103 WLINSMDPKLVSNFIRFSMAKAVWDNIVITYFDGTDTSQVYDLKRRVTRLKQEGGSIKTY 162
Query: 62 LSGIQNLWAKYVDMIYVQVPIESLADVQ---GVHEQSKRDQFLMKLRPEYKAARSNLMNR 118
+ +Q LW + +D P+E D+Q V ++ + FL +L R++++
Sbjct: 163 YNNLQGLW-REIDFRRSN-PMEYDIDIQKYNSVLQEDRVYTFLDELDDRLDKIRADVLQI 220
Query: 119 DLSPSLDVCFKE 130
P+++ + +
Sbjct: 221 QPFPTVEQAYAQ 232
>gi|147819265|emb|CAN68965.1| hypothetical protein VITISV_031258 [Vitis vinifera]
Length = 570
Score = 43.5 bits (101), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 57/248 (22%), Positives = 102/248 (41%), Gaps = 47/248 (18%)
Query: 4 IMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHL-----EYEIARYSQGDLSI 58
+ +V S+ + + +A ++WEYLK+ Y D K + E+E+ + + D+ +
Sbjct: 73 LFAAVSPSIFIKIMKIDSAAEIWEYLKEEYKGDERIKNMQVMNLIREFEMKKMRESDV-V 131
Query: 59 QNYLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMN- 117
++Y + + ++ A V ++ + E + + L+ L +Y+A S+L N
Sbjct: 132 KDYAAQLLSI-ADKVRLLGKEFSNEKIV-----------QKILVTLPEKYEATISSLENS 179
Query: 118 RDLSPSLDVCFKELLR-----EEQRL---------ATQTILQQNKMHDNAIAYAAAHGKS 163
+DLS + ELL E++RL A Q +Q+N H N +
Sbjct: 180 KDLST---ISLTELLHSLEAVEQRRLMRQGDTTEGAFQARMQKNAGHKNGKMNNNKPCSN 236
Query: 164 KGRDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN--------CQ 212
++ C CK+ H C CN C K GH+ + C + Q CQ
Sbjct: 237 NQKNGVFPPCPHCKKTNHSPQKCWWRPDVKCNKCGKQGHVERICKNQQQEETSAAVDYCQ 296
Query: 213 ASQAVVAS 220
Q A+
Sbjct: 297 EEQLFAAT 304
>gi|147818750|emb|CAN76176.1| hypothetical protein VITISV_022748 [Vitis vinifera]
Length = 1025
Score = 43.5 bits (101), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 79/198 (39%), Gaps = 39/198 (19%)
Query: 7 SVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLSGIQ 66
S+D ++L+L+ YKT W K +Y D + + + I Q D+ + Y+ I
Sbjct: 62 SIDPKILLHLRAYKTCFKFWNQAKGLYTND-IQRLYKVASSIVNVRQQDMBLXTYIGQIA 120
Query: 67 NLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRDLSPSLDV 126
+L +++ ++ P+ + DV ++++ D+F M ++ PSLD
Sbjct: 121 SLKEEFLTVM----PLST--DVG--DQRTQIDKFFM------------ILGSSSVPSLDD 160
Query: 127 CFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNC 186
F LLR +TQT+ N D+++ + Q S
Sbjct: 161 VFAXLLRIS---STQTLPSDNT-SDSSVLVS--------------QTNSRGGRSGNRGRG 202
Query: 187 AKKFCNYCKKPGHIIKEC 204
+ C YC K GH C
Sbjct: 203 QRPHCTYCNKLGHTXDRC 220
>gi|224098535|ref|XP_002334548.1| predicted protein [Populus trichocarpa]
gi|222873215|gb|EEF10346.1| predicted protein [Populus trichocarpa]
Length = 307
Score = 43.1 bits (100), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 30/140 (21%), Positives = 71/140 (50%), Gaps = 4/140 (2%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQ-DNTAKCFHLEYEIARYSQGDLSIQ 59
M+W+ S+ + TAKD+W+ ++++Y++ + A + ++ ++++ QG++ +
Sbjct: 72 MSWLWNSIMPEVCGPYMFLVTAKDIWDAVRQIYSKVKDAALIYEIKMKLSKTKQGNMMVI 131
Query: 60 NYLSGIQNLWAK--YVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMN 117
Y + +++ W + Y +Q E ++ E+ + +FL L E+ R ++
Sbjct: 132 EYYNIMKSFWLELDYYQDFKMQCS-EDAVILKNYVERERIFEFLAGLNIEFDQMRVQILG 190
Query: 118 RDLSPSLDVCFKELLREEQR 137
++ PSL+ F + EE R
Sbjct: 191 KESMPSLNKVFSVIRAEEGR 210
>gi|328865796|gb|EGG14182.1| hypothetical protein DFA_11951 [Dictyostelium fasciculatum]
Length = 130
Score = 43.1 bits (100), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 169 RQVQCFSCKEYRHIIVNCA-KKFCNYCKKPGHIIKECPTRPQN 210
+++ C+ CK+ H C + CN+CK+PGH +ECP +P+
Sbjct: 4 KEILCYKCKKPGHKAAGCTDEAVCNFCKQPGHFFRECPEKPEG 46
>gi|298204772|emb|CBI25270.3| unnamed protein product [Vitis vinifera]
Length = 227
Score = 43.1 bits (100), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 64/141 (45%), Gaps = 12/141 (8%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
M WI S+ + ++ + TA ++W L+K+++ + A+ L +++ +G LS+
Sbjct: 90 MCWIYSSLTKGVMAQIIGLDTASEIWTALEKIFSAASKARIMQLHFQLQTTKKGGLSMME 149
Query: 61 YLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRDL 120
YL I+++ VD + LA + + EQ + L L +Y + + +
Sbjct: 150 YLLKIKSI----VDNL--------LAIGENITEQDRILYLLAGLGAKYNSFVITVTSGHE 197
Query: 121 SPSLDVCFKELLREEQRLATQ 141
SL+ LL E RL Q
Sbjct: 198 PLSLEEIHSMLLTHENRLEQQ 218
>gi|384365691|gb|AFH76574.1| gag protein [Human immunodeficiency virus 1]
Length = 500
Score = 43.1 bits (100), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 152 NAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRP 208
NA+ G KG+ R V+CF+C + HI NC KK C C K GH +K+C R
Sbjct: 372 NAVGIMMQRGNFKGQ-RRNVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQ 430
Query: 209 QN 210
N
Sbjct: 431 AN 432
>gi|126542355|gb|ABO16609.1| gag protein [Feline immunodeficiency virus]
gi|134284782|gb|ABO69475.1| gag [Feline immunodeficiency virus]
Length = 461
Score = 43.1 bits (100), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 71/167 (42%), Gaps = 22/167 (13%)
Query: 47 EIARYSQGDLSIQNYLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRP 106
E+ + G N G + +++++VD ++ Q+ ES Q V + K + P
Sbjct: 265 ELRKIRAGAPRAVNVKQGPKEIYSEFVDRLFKQIEAESAP--QDVKQYLKDSLSISNANP 322
Query: 107 EYKAARSNLMNRDLSPSLDVCFKELLREEQRLATQT--------ILQQNKMHDNAIAYAA 158
E K A S+L D ++ +R Q + + LQQ ++ I
Sbjct: 323 ECKRAMSHLRPEDK-------LEDKIRACQDIGSTAYKMNMLAQALQQVRVQQVQIKPKG 375
Query: 159 AHGKSKGRDMRQVQCFSCKEYRHIIVNC-AKKFCNYCKKPGHIIKEC 204
+ +G ++CF+C + H+ NC A K CN C K GHI +C
Sbjct: 376 GNSPRRG----PLKCFNCGKLGHMAKNCRAPKRCNKCGKTGHISTDC 418
>gi|432846337|ref|XP_004065887.1| PREDICTED: zinc finger CCHC domain-containing protein 7-like
[Oryzias latipes]
Length = 592
Score = 43.1 bits (100), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 171 VQCFSCKEYRHIIVNCAKKFCNYCKKPGHIIKECPTRP 208
V CF C H+++ C K CN C PGH+ C +P
Sbjct: 316 VPCFLCGAPGHLVIECPNKHCNNCGHPGHLFNSCSEKP 353
>gi|112982721|ref|NP_001037117.1| zinc finger protein [Bombyx mori]
gi|59858992|gb|AAX09282.1| zinc finger protein [Bombyx mori]
Length = 143
Score = 43.1 bits (100), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 48/112 (42%), Gaps = 4/112 (3%)
Query: 97 RDQFLMKLRPE-YKAARSNLMNRDLSPSLDVCFK-ELLREEQRLATQTILQQNKMHDNAI 154
RD + R + +K R+ RD D C++ R Q+ + + + N
Sbjct: 27 RDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKT 86
Query: 155 AYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNC--AKKFCNYCKKPGHIIKEC 204
+ A + GR+ C++C + HI NC K C C KPGHI +EC
Sbjct: 87 GHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISREC 138
>gi|147772735|emb|CAN60627.1| hypothetical protein VITISV_018874 [Vitis vinifera]
Length = 416
Score = 43.1 bits (100), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 6/120 (5%)
Query: 22 AKDMWEYLKKVY-NQDNTAKCFHLEYEIARYSQGDLSIQNYLSGIQNLWAKYVDMIYVQV 80
AKD+W+ +++ Y + +N ++ F L+ + + QGD + Y + + LW + +
Sbjct: 117 AKDVWDGIRETYSDAENASQIFELKTRLWKMKQGDRKVTKYYTEMLGLWQD--PDLNCKK 174
Query: 81 PIESLAD---VQGVHEQSKRDQFLMKLRPEYKAARSNLMNRDLSPSLDVCFKELLREEQR 137
E D + E + +FL+ L E RS ++NR PS+ F + +EE R
Sbjct: 175 EWECTGDSVRFKKKMENERVFEFLVGLNCELDDVRSRVLNRRPLPSIREVFSVVQQEESR 234
>gi|147770077|emb|CAN72134.1| hypothetical protein VITISV_028721 [Vitis vinifera]
Length = 485
Score = 43.1 bits (100), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 57/248 (22%), Positives = 102/248 (41%), Gaps = 47/248 (18%)
Query: 4 IMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHL-----EYEIARYSQGDLSI 58
+ +V S+ + + +A ++WEYLK+ Y D K + E+E+ + + D ++
Sbjct: 73 LFAAVSPSIFIKIMKIDSAAEIWEYLKEEYKGDERIKNMQVMNLIREFEMKKMRESD-AV 131
Query: 59 QNYLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMN- 117
++Y + + ++ A V ++ + E + + L+ L +Y+A S+L N
Sbjct: 132 KDYAAQLLSI-ADKVRLLGKEFSNEKIV-----------QKILVTLPEKYEATISSLENS 179
Query: 118 RDLSPSLDVCFKELLR-----EEQRL---------ATQTILQQNKMHDNAIAYAAAHGKS 163
+DLS + ELL E++RL A Q +Q+N H N +
Sbjct: 180 KDLST---ISLTELLHSLEAVEQRRLMRQGDTTEGAFQARMQKNAGHKNGKMNNNKPCSN 236
Query: 164 KGRDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN--------CQ 212
++ C CK+ H C CN C K GH+ + C + Q CQ
Sbjct: 237 NQKNGVFPPCPHCKKTNHSPQKCWWRPDVKCNKCGKQGHVERICKNQQQEETSAAVDYCQ 296
Query: 213 ASQAVVAS 220
Q A+
Sbjct: 297 EEQLFAAT 304
>gi|147833448|emb|CAN68520.1| hypothetical protein VITISV_011970 [Vitis vinifera]
Length = 582
Score = 43.1 bits (100), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 104/247 (42%), Gaps = 47/247 (19%)
Query: 5 MGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHL-----EYEIARYSQGDLSIQ 59
+V S+ + + A ++WEYLK+ Y D K + E+E+ + + D +++
Sbjct: 53 FAAVSPSIFIKIMKIDLAAEIWEYLKEEYKGDERIKNMQVMNLIREFEMKKMRESD-AVK 111
Query: 60 NYLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMN-R 118
+Y + + ++ A V ++ + E + + L+ L +Y+A S+L N +
Sbjct: 112 DYATQLLSI-ADKVRLLGKEFSNEKIV-----------QKILVTLPEKYEATISSLENSK 159
Query: 119 DLSPSLDVCFKELLR-----EEQRLATQTILQ----QNKMHDNAIAYAAA--HGKSKGRD 167
DLS + ELL E++RL Q + Q +MH NA + KS G +
Sbjct: 160 DLS---TISLTELLHSLEAVEQRRLMRQGDIAEGAFQARMHKNAGHKNGKVNNNKSCGNN 216
Query: 168 MRQ---VQCFSCKEYRHIIVNCAKKF---CNYCKKPGHIIKECPTRPQN--------CQA 213
+ C CK+ H C + CN C K GH+ + C + Q CQ
Sbjct: 217 QKNGVFPPCPHCKKTNHSPQKCWWRPDVKCNKCGKQGHVERICKNQQQEETSAAVDYCQE 276
Query: 214 SQAVVAS 220
Q A+
Sbjct: 277 EQLFAAT 283
>gi|254667176|gb|ACT76540.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 43.1 bits (100), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTR 207
+D ++++CF+C H+ NC KK C C K GH +K+CP R
Sbjct: 383 KDQKRIKCFNCGREGHLARNCRAPRKKGCWKCGKEGHQMKDCPER 427
>gi|374349456|gb|AEZ35326.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 491
Score = 43.1 bits (100), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + HI NC KK C C K GH +K+CP R N
Sbjct: 379 RSVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKDCPGRQAN 423
>gi|147772049|emb|CAN66753.1| hypothetical protein VITISV_036089 [Vitis vinifera]
Length = 573
Score = 43.1 bits (100), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 57/248 (22%), Positives = 101/248 (40%), Gaps = 47/248 (18%)
Query: 4 IMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHL-----EYEIARYSQGDLSI 58
+ +V S+ + + +A ++WEYLK+ Y D K + E+E+ + + D ++
Sbjct: 73 LFAAVSPSIFIKIMKIDSAAEIWEYLKEEYKGDERIKNMQVMNLIREFEMKKMRESD-AV 131
Query: 59 QNYLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMN- 117
++Y + + ++ A V ++ + E + + L+ L +Y+A S+L N
Sbjct: 132 KDYAAQLLSI-ADKVRLLGKEFSNEKIV-----------QKILVTLPEKYEATISSLENS 179
Query: 118 RDLSPSLDVCFKELLR-----EEQRL---------ATQTILQQNKMHDNAIAYAAAHGKS 163
+DLS + ELL E++RL A Q +Q+N H N
Sbjct: 180 KDLS---TISLTELLHSLEAVEQRRLMRQGDTAEGAFQARMQKNAGHKNGKMNNNKPCSK 236
Query: 164 KGRDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN--------CQ 212
++ C CK+ H C CN C K GH+ + C + Q CQ
Sbjct: 237 NQKNGVFPPCPHCKKTNHSPQKCWWRPDVKCNKCGKQGHVERICKNQQQEETSAAVDYCQ 296
Query: 213 ASQAVVAS 220
Q A+
Sbjct: 297 EEQLFAAT 304
>gi|432953363|ref|XP_004085368.1| PREDICTED: zinc finger CCHC domain-containing protein 3-like,
partial [Oryzias latipes]
Length = 332
Score = 43.1 bits (100), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Query: 161 GKSKGRDMRQVQ---CFSCKEYRHIIVNCAKKFCNYCKKPGHIIKECP 205
G+++G Q Q C C E+ H++ +C+K FC C+ GH+ +ECP
Sbjct: 169 GENRGYVYYQGQPKLCRRCGEHGHLVEDCSKPFCGKCRHTGHVYEECP 216
>gi|254667164|gb|ACT76532.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 43.1 bits (100), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTR 207
+D ++++CF+C H+ NC KK C C K GH +K+CP R
Sbjct: 383 KDQKRIKCFNCGREGHLARNCRAPRKKGCWKCGKEGHQMKDCPER 427
>gi|146400059|gb|ABQ28727.1| gag protein [Equine infectious anemia virus]
Length = 486
Score = 43.1 bits (100), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 152 NAIAYAAAHGKSKGRDMRQVQ-CFSCKEYRHIIVNC-AKKFCNYCKKPGHIIKECPTRPQ 209
+ +A A G KG ++ Q C++C + H+ C A K C CK+PGH K+C P+
Sbjct: 359 SGLAGAMKGGIMKGGPLKAPQTCYNCGKPGHLSSQCRAPKVCFKCKEPGHFSKQCRNTPK 418
Query: 210 N 210
N
Sbjct: 419 N 419
>gi|432956394|ref|XP_004085700.1| PREDICTED: zinc finger CCHC domain-containing protein 3-like
[Oryzias latipes]
Length = 376
Score = 42.7 bits (99), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 173 CFSCKEYRHIIVNCAKKFCNYCKKPGHIIKECPTRPQ 209
C C E+ H++ +C+K FC C+ GH+ +ECP Q
Sbjct: 184 CRRCGEHGHLVEDCSKPFCGKCRNIGHVYEECPNGRQ 220
>gi|357619173|gb|EHJ71850.1| zinc finger protein [Danaus plexippus]
Length = 144
Score = 42.7 bits (99), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 3/100 (3%)
Query: 108 YKAARSNLMNRDLSPSLDVCFK-ELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGR 166
+K R+ RD D C++ R Q+ + + + N + A + GR
Sbjct: 39 FKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGR 98
Query: 167 DMRQVQCFSCKEYRHIIVNC--AKKFCNYCKKPGHIIKEC 204
D C++C + HI NC K C C KPGHI ++C
Sbjct: 99 DNSNQTCYNCNKTGHISRNCPDGTKTCYVCGKPGHISRDC 138
>gi|227057835|gb|ACP18899.1| gag protein [Human immunodeficiency virus 1]
Length = 500
Score = 42.7 bits (99), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 161 GKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
G +G+ R+++CF+C + HI NC +K C C K GH +K+C R N
Sbjct: 380 GNFRGQGRRRIKCFNCGKEGHIARNCKAPRRKGCWKCGKEGHQMKDCTERQAN 432
>gi|260935368|gb|ACX54356.1| gag polyprotein [Equine infectious anemia virus]
Length = 427
Score = 42.7 bits (99), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 152 NAIAYAAAHGKSKGRDMRQVQ-CFSCKEYRHIIVNC-AKKFCNYCKKPGHIIKECPTRPQ 209
+A G KG +R Q C++C + H+ C A K C CK+PGH K+C P+
Sbjct: 362 TGLAGPMKGGAMKGGPLRAKQTCYNCGKQGHLSSQCRAPKVCFKCKEPGHFSKQCRNAPK 421
Query: 210 N 210
N
Sbjct: 422 N 422
>gi|27227833|dbj|BAC45014.1| gag-pol polyprotein [Human immunodeficiency virus 1]
Length = 871
Score = 42.7 bits (99), Expect = 0.099, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C HI NC K+ C C K GH +K+CP R N
Sbjct: 383 RIVKCFNCGREGHIAKNCKAPRKRGCWKCGKEGHQMKDCPERQAN 427
>gi|338746563|dbj|BAK41511.1| polyprotein [Arabidopsis thaliana]
Length = 1466
Score = 42.7 bits (99), Expect = 0.099, Method: Composition-based stats.
Identities = 28/135 (20%), Positives = 60/135 (44%), Gaps = 12/135 (8%)
Query: 4 IMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLS 63
++G++ S+ + TA +WE L+K+Y + L ++ ++++G +I +Y+
Sbjct: 88 VLGAISMSVQPAVSRATTAAQIWETLRKIYANPSYGHVTQLRTQLKQWTKGTKTIDDYMQ 147
Query: 64 GIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRDLSPS 123
G ++ + + P++ V+ V E L EYK + +D P+
Sbjct: 148 GFV---TRFDQLALLGKPMDHDEQVERVLEN---------LPEEYKPVIDQIAAKDTPPT 195
Query: 124 LDVCFKELLREEQRL 138
L + LL E ++
Sbjct: 196 LTEIHERLLNHESKI 210
>gi|259126521|gb|ACV94231.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Query: 152 NAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRP 208
NA A G +G+ R+++CF+C + H+ NC KK C C K GH +KEC R
Sbjct: 372 NAAAVMMQRGNFRGQ--RRIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKECTERQ 429
Query: 209 QN 210
N
Sbjct: 430 AN 431
>gi|147766266|emb|CAN74461.1| hypothetical protein VITISV_032891 [Vitis vinifera]
Length = 971
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQ-DNTAKCFHLEYEIARYSQGDLSIQ 59
M W++ S++ + N YK AK++W+ K +Y+ N ++ F L+ ++ QGD ++
Sbjct: 3 MAWLVNSMEPKIGRNYLSYKIAKEIWDTAKVMYSDLGNVSQLFDLQSKLKEKKQGDSTVI 62
Query: 60 NYLSGIQNLW 69
+Y + + LW
Sbjct: 63 DYYNTLIGLW 72
>gi|432955938|ref|XP_004085637.1| PREDICTED: uncharacterized protein LOC101164623, partial [Oryzias
latipes]
Length = 449
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Query: 161 GKSKGRDMRQVQ---CFSCKEYRHIIVNCAKKFCNYCKKPGHIIKECP 205
G+++G Q Q C C E+ H++ +C+K FC C+ GH+ +ECP
Sbjct: 169 GENRGYVHYQGQPKLCRRCGEHGHLVEDCSKPFCGKCRNIGHVYEECP 216
>gi|114689169|ref|XP_529043.2| PREDICTED: zinc finger CCHC domain-containing protein 13 [Pan
troglodytes]
gi|397507945|ref|XP_003824438.1| PREDICTED: zinc finger CCHC domain-containing protein 13-like [Pan
paniscus]
Length = 170
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNCAKKF---CNYCKKPGHIIKECPT 206
+D QV+C+ C E H+ +NC+K C C K GH+ KECP+
Sbjct: 123 KDCAQVKCYRCGEIGHVAINCSKTRPGQCYRCGKSGHLAKECPS 166
>gi|259126519|gb|ACV94230.1| gag protein [Human immunodeficiency virus 1]
gi|259126550|gb|ACV94245.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Query: 151 DNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTR 207
NA A G +G+ R+++CF+C + H+ NC KK C C K GH +KEC R
Sbjct: 371 SNAAAVMMQRGNFRGQ--RRIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKECTER 428
Query: 208 PQN 210
N
Sbjct: 429 QAN 431
>gi|259126547|gb|ACV94244.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Query: 152 NAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRP 208
NA A G +G+ R+++CF+C + H+ NC KK C C K GH +KEC R
Sbjct: 372 NAAAVMMQRGNFRGQ--RRIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKECTERQ 429
Query: 209 QN 210
N
Sbjct: 430 AN 431
>gi|259127118|gb|ACV94428.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R R+++CF+C + H+ NC KK C C K GH +KEC R N
Sbjct: 383 RGQRRIKCFNCGKEGHLAKNCGAPRKKGCWKCGKEGHQMKECTERQAN 430
>gi|441674301|ref|XP_004092503.1| PREDICTED: zinc finger CCHC domain-containing protein 13 [Nomascus
leucogenys]
Length = 170
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNCAKK---FCNYCKKPGHIIKECPT 206
+D QV+C+ C E H+ +NC+K C C K GH+ KECP+
Sbjct: 123 KDCAQVKCYRCGEIGHVSINCSKASEVTCYRCGKSGHLAKECPS 166
>gi|147855745|emb|CAN79134.1| hypothetical protein VITISV_000843 [Vitis vinifera]
Length = 1253
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 61/120 (50%), Gaps = 10/120 (8%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKV-YNQDNTAKCFHLEYEIARYSQGDLSIQ 59
MTW++ S+++ + N Y T +++WE + ++ Y+ N ++ F L ++ QG+ ++
Sbjct: 29 MTWLVNSMEEDINCNYMCYPTIQELWENVNQMYYDLGNQSQIFELTLKLGEIRQGEDNVT 88
Query: 60 NYLSGIQNLWAKYVDMIYVQVPIESLADVQGVH-----EQSKRDQFLMKLRPEYKAARSN 114
Y + ++ +W D+ + E + G+H E ++ +FL L E+ +S+
Sbjct: 89 KYFNSLKQIWQ---DLDFFNT-YEWKSAEDGLHHKKTMEDNRIFKFLAGLNVEFDERKSD 144
>gi|126542353|gb|ABO16608.1| gag protein [Feline immunodeficiency virus]
gi|134284775|gb|ABO69469.1| gag [Feline immunodeficiency virus]
Length = 461
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 71/167 (42%), Gaps = 22/167 (13%)
Query: 47 EIARYSQGDLSIQNYLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRP 106
E+ + G N G + ++++++D ++ Q+ ES Q V + K + P
Sbjct: 265 ELRKIRAGAPRAVNVKQGPKEIYSEFIDRLFKQIEAESAP--QDVKQYLKDSLSISNANP 322
Query: 107 EYKAARSNLMNRDLSPSLDVCFKELLREEQRLATQT--------ILQQNKMHDNAIAYAA 158
E K A S+L D ++ +R Q + + LQQ ++ I
Sbjct: 323 ECKRAMSHLRPEDK-------LEDKIRACQDIGSTAYKMNMLAQALQQVRVQQVQIKPKG 375
Query: 159 AHGKSKGRDMRQVQCFSCKEYRHIIVNC-AKKFCNYCKKPGHIIKEC 204
+ +G ++CF+C + H+ NC A K CN C K GHI +C
Sbjct: 376 GNSPRRG----PLKCFNCGKLGHMAKNCRAPKRCNKCGKTGHISTDC 418
>gi|414883912|tpg|DAA59926.1| TPA: hypothetical protein ZEAMMB73_445489 [Zea mays]
Length = 556
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 167 DMRQVQCFSCKEYRHIIVNCAKKF-CNYCKKPGHIIKECPTRPQNCQA 213
D+R +CF+C H C+ + C +C++PGH + ECP R N A
Sbjct: 170 DLRG-RCFNCFSADHRAARCSNRVRCFFCRRPGHRVSECPRRQTNLAA 216
>gi|147805321|emb|CAN69620.1| hypothetical protein VITISV_008603 [Vitis vinifera]
gi|147841281|emb|CAN62417.1| hypothetical protein VITISV_038422 [Vitis vinifera]
Length = 570
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 57/248 (22%), Positives = 102/248 (41%), Gaps = 47/248 (18%)
Query: 4 IMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHL-----EYEIARYSQGDLSI 58
+ +V S+ + + +A ++WEYLK+ Y D K + E+E+ + + D ++
Sbjct: 73 LFAAVSPSIFIKIMKIDSAAEIWEYLKEEYKGDERIKNMQVMNLIREFEMKKMRESD-AV 131
Query: 59 QNYLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMN- 117
++Y + + ++ A V ++ + E + + L+ L +Y+A S+L N
Sbjct: 132 KDYAAQLLSI-ADKVRLLGKEFSNEKIV-----------QKILVTLPEKYEATISSLENS 179
Query: 118 RDLSPSLDVCFKELLR-----EEQRL---------ATQTILQQNKMHDNAIAYAAAHGKS 163
+DLS + ELL E++RL A Q +Q+N H N +
Sbjct: 180 KDLS---TISLTELLHSLEAVEQRRLMRQGDTAEGAFQARMQKNAGHKNEKMNNNKPCSN 236
Query: 164 KGRDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN--------CQ 212
++ C CK+ H C CN C K GH+ + C + Q CQ
Sbjct: 237 NQKNGVFPPCPHCKKTNHSPQKCWWRPDVKCNKCGKQGHVERICKNQQQEETSAAVDYCQ 296
Query: 213 ASQAVVAS 220
Q A+
Sbjct: 297 EEQLFAAT 304
>gi|14579613|gb|AAK69330.1| gag protein [Human immunodeficiency virus 1]
Length = 492
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + HI NC KK C C K GH +K+CP R N
Sbjct: 383 RIVKCFNCGKTGHIAKNCKAPRKKGCWKCGKEGHQMKDCPERQAN 427
>gi|147780359|emb|CAN59936.1| hypothetical protein VITISV_001878 [Vitis vinifera]
Length = 1031
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/207 (17%), Positives = 88/207 (42%), Gaps = 32/207 (15%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
++W+ SV + + ++ ++T ++W L + ++Q + + F L+ +I ++QG +Q
Sbjct: 91 ISWLSNSVCKEISESILYHETTIEIWNDLYERFHQGSGPRIFELKQKILAHTQGSADLQE 150
Query: 61 YLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRD---QFLMKLRPEYKAARSNLMN 117
+ + +P+ + ++ E +R+ QFL+ L + R+ ++
Sbjct: 151 FKA----------------IPVCNCGGMRVYMEDQQRESVMQFLLGLNESFIPIRAQILL 194
Query: 118 RDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCK 177
+ +P L+ F +++EE++ + T N+ A+ A R +
Sbjct: 195 MEPTPLLNKVFSLVVQEERQRSLTT--------SNSPAFTAPVSSRFQAASRASSPTNSS 246
Query: 178 EYRHIIVNCAKKFCNYCKKPGHIIKEC 204
R + C +C GH + +C
Sbjct: 247 RSRK-----DRPLCTHCNILGHTVDQC 268
>gi|300244839|gb|ADJ93852.1| gag polyprotein [Equine infectious anemia virus]
Length = 426
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 66/168 (39%), Gaps = 27/168 (16%)
Query: 54 GDLSIQNYLSGIQNLWAKYVDMIYVQVPIES--------LADVQGVHEQSKRDQFLMK-L 104
G QN G + + +VD + QV E L D + ++ + M+ L
Sbjct: 270 GKPKAQNIRQGPKEPYPDFVDRLLSQVKSEGHPSEITKFLTDTLTIQNANEECKAAMRHL 329
Query: 105 RPEYKAARSNLMNRDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSK 164
RPE RD+ + Q ++ + + +A + G K
Sbjct: 330 RPEDTLEEKLYACRDIGTT----------------KQKMMLLARALQSGLAGSMEGGICK 373
Query: 165 GRDMRQVQ-CFSCKEYRHIIVNC-AKKFCNYCKKPGHIIKECPTRPQN 210
G ++ Q C++C + H+ C A K C CK+PGH K+C P+N
Sbjct: 374 GGSLKAPQICYNCGKPGHLSSQCRAPKVCFKCKQPGHFSKQCRNAPKN 421
>gi|147797305|emb|CAN73741.1| hypothetical protein VITISV_026083 [Vitis vinifera]
Length = 300
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 74/186 (39%), Gaps = 11/186 (5%)
Query: 21 TAKDMWEYLKKVYNQDNTAKCFH-LEYEIARYSQGDLSIQNYLSGIQNLWAKYVDMIYVQ 79
T +D+WE +++ Y++ A H ++ +I Q + Y + +++LW + ++
Sbjct: 86 TTRDIWETIRQTYSKVRDAXHIHKIKTKIGATKQDTFVVTKYNNIMKSLWLELDYYQNIK 145
Query: 80 VPIESLADVQGVHEQSKRD-QFLMKLRPEYKAARSNLMNRDLSPSLDVCFKELLREEQRL 138
+ A + QS R +FL+ L EY + ++ ++ P L+ + EE R
Sbjct: 146 MKCSEDAAMMLKFVQSXRXFEFLVGLNVEYDQVKVQVLGKEDLPHLNEVLSIIRAEEGR- 204
Query: 139 ATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCAKKFCNYCKKPG 198
N M D + +K E +N +C YCKKP
Sbjct: 205 --------NAMLDTPTTESPGLVTTKPNSTLLNNNXGGSEVSRSPINKNALWCVYCKKPR 256
Query: 199 HIIKEC 204
H + C
Sbjct: 257 HTKETC 262
>gi|223951331|gb|ACN29611.1| gag protein [Human immunodeficiency virus 1]
Length = 511
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Query: 162 KSKGRDMRQ-VQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTR 207
+ GRD R+ V+CF+C + HI NC KK C C K GH +K+C R
Sbjct: 380 RGNGRDQRKTVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKDCTER 429
>gi|166026108|gb|ABY78364.1| gag protein [Human immunodeficiency virus 1]
Length = 493
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 165 GRDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
G R+V+CF+C + HI NC KK C C K GH +KEC R N
Sbjct: 384 GNQRRKVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKECTERQAN 432
>gi|259126535|gb|ACV94238.1| gag protein [Human immunodeficiency virus 1]
gi|259126543|gb|ACV94242.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Query: 152 NAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRP 208
NA A G +G+ R+++CF+C + H+ NC KK C C K GH +KEC R
Sbjct: 372 NAAAVMMQRGNFRGQ--RRIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKECTERQ 429
Query: 209 QN 210
N
Sbjct: 430 AN 431
>gi|166026124|gb|ABY78372.1| gag protein [Human immunodeficiency virus 1]
Length = 503
Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 35/64 (54%), Gaps = 6/64 (9%)
Query: 153 AIAYAAAHGKSKG--RDMRQ-VQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPT 206
A AA KG R+ R+ ++CF+C + H+ NC KK C C + GH +KECPT
Sbjct: 370 ATGSAATIMMQKGNFRNQRKTIKCFNCGKEGHLARNCRAPRKKGCWKCGQEGHQMKECPT 429
Query: 207 RPQN 210
R N
Sbjct: 430 RQAN 433
>gi|259126545|gb|ACV94243.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Query: 152 NAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRP 208
NA A G +G+ R+++CF+C + H+ NC KK C C K GH IK+C R
Sbjct: 372 NAAAVMMQRGNFRGQ--RRIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQIKDCTERQ 429
Query: 209 QN 210
N
Sbjct: 430 AN 431
>gi|37728011|gb|AAR02376.1| gag protein [Simian immunodeficiency virus]
Length = 510
Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
Query: 170 QVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQ 209
Q +CF+C ++ H+ NC ++ C C +PGH+ K+CP P+
Sbjct: 394 QPKCFNCGKFGHMAKNCKAPQRRKCYNCGQPGHLAKDCPQPPK 436
>gi|259126539|gb|ACV94240.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Query: 152 NAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRP 208
NA A G +G+ R+++CF+C + H+ NC KK C C K GH IK+C R
Sbjct: 372 NAAAVMMQRGNFRGQ--RRIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQIKDCTERQ 429
Query: 209 QN 210
N
Sbjct: 430 AN 431
>gi|374430076|gb|AEZ51335.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 485
Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C HI NC KK C C K GH +K+CP R N
Sbjct: 376 RMVKCFNCGRDGHIAKNCRAPRKKGCWKCGKEGHQLKDCPERQAN 420
>gi|189182786|gb|ACD81986.1| gag protein [Equine infectious anemia virus]
Length = 487
Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 66/168 (39%), Gaps = 27/168 (16%)
Query: 54 GDLSIQNYLSGIQNLWAKYVDMIYVQVPIES--------LADVQGVHEQSKRDQFLMK-L 104
G QN G + + +VD + QV E L D + ++ + M+ L
Sbjct: 270 GKPKAQNIRQGPKEPYPDFVDRLLSQVKSEGHPSEITKFLTDTLTIQNANEECKAAMRHL 329
Query: 105 RPEYKAARSNLMNRDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSK 164
RPE RD+ Q ++ + +++A + G K
Sbjct: 330 RPEDTLEEKLYACRDIG----------------TTKQKMMLLARALQSSLAGSMKGGICK 373
Query: 165 GRDMRQVQ-CFSCKEYRHIIVNC-AKKFCNYCKKPGHIIKECPTRPQN 210
G ++ Q C++C + H+ C A K C CK+PGH K+C P+N
Sbjct: 374 GGSLKAPQTCYNCGKPGHLSSQCRAPKVCFKCKQPGHFSKQCRNAPKN 421
>gi|410131096|gb|AFV61763.1| gag protein [Equine infectious anemia virus]
Length = 483
Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 65/168 (38%), Gaps = 27/168 (16%)
Query: 54 GDLSIQNYLSGIQNLWAKYVDMIYVQVPIES--------LADVQGVHEQSKRDQFLMK-L 104
G QN G + + +VD + Q+ E L D +H ++ + M+ L
Sbjct: 270 GKPKAQNIRQGPKEPYPDFVDRLLSQIKSEGHSPDITKFLTDTLTIHNANEECRSAMRHL 329
Query: 105 RPEYKAARSNLMNRDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSK 164
RPE RD+ + Q++A K + G K
Sbjct: 330 RPEDTLEEKMYACRDVG-----------SQRQKMALLA-----KALQTGLVGPMKAGVLK 373
Query: 165 GRDMRQVQ-CFSCKEYRHIIVNC-AKKFCNYCKKPGHIIKECPTRPQN 210
G ++ Q C++C + H+ C A K C CK+PGH K+C P+N
Sbjct: 374 GGPLKAKQTCYNCGKPGHLSSQCRAPKVCFKCKEPGHFSKQCKQNPKN 421
>gi|147766538|emb|CAN69691.1| hypothetical protein VITISV_026777 [Vitis vinifera]
Length = 1223
Score = 42.4 bits (98), Expect = 0.13, Method: Composition-based stats.
Identities = 48/207 (23%), Positives = 81/207 (39%), Gaps = 51/207 (24%)
Query: 7 SVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLSGIQ 66
SVD ++L+L+ YKT W K +Y D I R + DL + Y+ I
Sbjct: 95 SVDPKILLHLRAYKTCFKFWTQAKGLYTND-----------IQRLYK-DLDLSTYIGQIA 142
Query: 67 NLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLM-----KLRPEYKAARSNLMNRDLS 121
+L +++ ++ P+ DV+ +Q++ D+F M L P+ + R ++
Sbjct: 143 SLKEEFLTVM----PLT--PDVRA--QQTQLDKFFMVLTLIGLHPDIELVRDQILGSSSV 194
Query: 122 PSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAA----HGKSKGRDMRQVQCFSCK 177
SLD F L +TQT+ + + + + + H ++GR R
Sbjct: 195 SSLDDVFARL---PHISSTQTLPFDSTSNSSVLVSQTSSREGHSGTRGRGQR-------- 243
Query: 178 EYRHIIVNCAKKFCNYCKKPGHIIKEC 204
C YC K GH C
Sbjct: 244 -----------PHCTYCNKLGHTRNRC 259
>gi|224119568|ref|XP_002318106.1| predicted protein [Populus trichocarpa]
gi|222858779|gb|EEE96326.1| predicted protein [Populus trichocarpa]
Length = 334
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 94/220 (42%), Gaps = 36/220 (16%)
Query: 4 IMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFH-----LEYEIARYSQGDLSI 58
+ +V ++ + ++AKD+W+YLKK Y D + E+E+ R + +I
Sbjct: 75 LFAAVSTTIFTRIMSLQSAKDVWDYLKKEYAGDERIRGMQSLNLIREFELQRMKDSE-TI 133
Query: 59 QNY---LSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNL 115
+ Y L GI N V++ + S AD + V ++ L+ + +Y+A+ + L
Sbjct: 134 KEYSDKLMGIAN---------RVRLLVTSFADSRIV------EKLLVTVPEKYEASITTL 178
Query: 116 MN-RDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCF 174
N +DLS + ELL Q + +++Q+ + A+ A K +
Sbjct: 179 ENTKDLS---KITLTELLNALQAQEQRRLMRQDHAIEGALQAKFADYDKKKFSRKNAASG 235
Query: 175 SCK------EYRHIIVNCAKKFCNYCKKPGHIIKECPTRP 208
S K + + I N C +C K GH +C RP
Sbjct: 236 SIKPNQGYNKGKFIKRNFPP--CQHCNKSGHPPFKCWKRP 273
>gi|159505443|gb|ABW97698.1| gag protein [Equine infectious anemia virus]
Length = 487
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 65/168 (38%), Gaps = 27/168 (16%)
Query: 54 GDLSIQNYLSGIQNLWAKYVDMIYVQVPIES--------LADVQGVHEQSKRDQFLMK-L 104
G QN G + + +VD + QV E L D + ++ + M+ L
Sbjct: 270 GKPKAQNIRQGPKEPYPDFVDRLLSQVKSEGHPSEITKFLTDTLTIQNANEECKAAMRHL 329
Query: 105 RPEYKAARSNLMNRDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSK 164
RPE RD+ Q ++ + + +A + G K
Sbjct: 330 RPEDTLEEKLYACRDIG----------------TTKQKMMLLARALQSGLAGSMKGGICK 373
Query: 165 GRDMRQVQ-CFSCKEYRHIIVNC-AKKFCNYCKKPGHIIKECPTRPQN 210
G ++ Q C++C + H+ C A K C CK+PGH K+C P+N
Sbjct: 374 GGSLKAPQTCYNCGKPGHLSSQCRAPKVCFKCKQPGHFSKQCRNAPKN 421
>gi|354488556|ref|XP_003506434.1| PREDICTED: cellular nucleic acid-binding protein-like [Cricetulus
griseus]
Length = 170
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNCAKK---FCNYCKKPGHIIKECP 205
+D Q++C+ C E H+ VNC+K C C +PGH+ +ECP
Sbjct: 123 KDCTQIKCYRCGENGHMAVNCSKASEVSCYRCGEPGHLARECP 165
>gi|37682802|gb|AAQ98385.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 499
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 5/51 (9%)
Query: 161 GKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRP 208
G KG+ ++++CF+C + RH+ NC KK C C K GH +K+C RP
Sbjct: 378 GNFKGQ--KRIKCFNCGKDRHLARNCRAPRKKGCWRCGKEGHQMKDCTERP 426
>gi|903629|gb|AAB38028.1| gag polyprotein, partial [Human immunodeficiency virus 1]
Length = 499
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
R+ R+++CF+C + H+ NC KK C C K GH IK+C R N
Sbjct: 384 RNQRKIKCFNCGKEGHLAKNCRAPRKKGCWKCGKEGHQIKDCTERQAN 431
>gi|166236167|gb|ABY85873.1| gag protein [Equine infectious anemia virus]
Length = 487
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 65/168 (38%), Gaps = 27/168 (16%)
Query: 54 GDLSIQNYLSGIQNLWAKYVDMIYVQVPIES--------LADVQGVHEQSKRDQFLMK-L 104
G QN G + + +VD + QV E L D + ++ + M+ L
Sbjct: 270 GKPKAQNIRQGPKEPYPDFVDRLLSQVKSEGHPSEITKFLTDTLTIQNANEECKAAMRHL 329
Query: 105 RPEYKAARSNLMNRDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSK 164
RPE RD+ Q ++ + + +A + G K
Sbjct: 330 RPEDTLEEKLYACRDIG----------------TTKQKMMLLARALQSGLAGSMKGGVCK 373
Query: 165 GRDMRQVQ-CFSCKEYRHIIVNC-AKKFCNYCKKPGHIIKECPTRPQN 210
G ++ Q C++C + H+ C A K C CK+PGH K+C P+N
Sbjct: 374 GGPLKAPQTCYNCGKPGHLSSQCRAPKVCFKCKQPGHFSKQCRNAPKN 421
>gi|166236165|gb|ABY85872.1| gag protein [Equine infectious anemia virus]
Length = 487
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 65/168 (38%), Gaps = 27/168 (16%)
Query: 54 GDLSIQNYLSGIQNLWAKYVDMIYVQVPIES--------LADVQGVHEQSKRDQFLMK-L 104
G QN G + + +VD + QV E L D + ++ + M+ L
Sbjct: 270 GKPKAQNIRQGPKEPYPDFVDRLLSQVKSEGHPSEITKFLTDTLTIQNANEECKAAMRHL 329
Query: 105 RPEYKAARSNLMNRDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSK 164
RPE RD+ Q ++ + + +A + G K
Sbjct: 330 RPEDTLEEKLYACRDIG----------------TTKQKMMLLARALQSGLAGSMKGGICK 373
Query: 165 GRDMRQVQ-CFSCKEYRHIIVNC-AKKFCNYCKKPGHIIKECPTRPQN 210
G ++ Q C++C + H+ C A K C CK+PGH K+C P+N
Sbjct: 374 GGPLKAPQTCYNCGKPGHLSSQCRAPKVCFKCKQPGHFSKQCRNAPKN 421
>gi|108864585|gb|ABA94767.2| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 2446
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 60/142 (42%), Gaps = 15/142 (10%)
Query: 2 TWIMGSV-DQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
+WI GSV D L L ++P +TA+++W + +++ + + L ++ QGD SI +
Sbjct: 92 SWIFGSVADNILDLAMEPDQTARELWVTITDMFHANKEPRAIFLSHQFHSMIQGDSSIDD 151
Query: 61 YLSGIQNLWAKYVDMIYVQVPIESLADV-QGVHEQSKRDQFLMKLRPEYKAARSNLMNRD 119
Y ++ ++L DV V E L L + N+ N
Sbjct: 152 YCQEMKTA-------------ADALRDVGHAVTESQLVLNLLRGLNERFSNTGENIANAA 198
Query: 120 LSPSLDVCFKELLREEQRLATQ 141
+ PS L+ +E LA +
Sbjct: 199 VLPSFTSACNTLMLKELCLANE 220
>gi|77553001|gb|ABA95797.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1588
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 39/190 (20%), Positives = 85/190 (44%), Gaps = 20/190 (10%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYN-QDNTAKCFHLEYEIARYSQGDLSIQ 59
+ W+M SV S+ ++ + A +W+ L +Y+ + N + ++ Q ++Q
Sbjct: 126 VAWLMTSVSPSIARMIEAIQNATIIWKTLSNMYSGEGNVMMMVEAQDKVDNLKQEGRTVQ 185
Query: 60 NYLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKR-DQFLMKLRPEYKAARSNLMNR 118
Y S +Q+LWA +Q+ + + Q +R FL L E++ R+ + ++
Sbjct: 186 EYASELQHLWADLDHYDPLQLKHDDDIVIGNKWLQRRRFIHFLKGLNKEFEDRRAAMFHQ 245
Query: 119 DLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAI--AYAAAHGKSKGRDMRQVQCFSC 176
P+++ +++EE R Q +++ + N + AY + + +C++C
Sbjct: 246 ATLPNMEEAISAMVQEEMR---QKVMKGS----NPVRSAYITINDR---------ECYNC 289
Query: 177 KEYRHIIVNC 186
H+ NC
Sbjct: 290 GLKGHVSYNC 299
>gi|147858119|emb|CAN79672.1| hypothetical protein VITISV_012210 [Vitis vinifera]
Length = 1211
Score = 42.4 bits (98), Expect = 0.14, Method: Composition-based stats.
Identities = 45/203 (22%), Positives = 76/203 (37%), Gaps = 43/203 (21%)
Query: 7 SVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLSGIQ 66
SVD ++L+L+ YKT W K +Y D I R + DL + Y+ I
Sbjct: 78 SVDPKILLHLRAYKTCFKFWTQAKGLYTND-----------IQRLYK-DLDLSTYIGQIA 125
Query: 67 NLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLM-----KLRPEYKAARSNLMNRDLS 121
+L +++ ++ P+ Q Q++ D+F M LR + ++
Sbjct: 126 SLQEEFLTVM----PLTPDVGAQ----QTQLDKFFMVLTLIGLRSNLEPVHDQILGGSSV 177
Query: 122 PSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRH 181
PSLD F LL R+++ L + + D+++ + S
Sbjct: 178 PSLDDVFAHLL----RISSTQTLPSDSISDSSVLVS--------------HTTSRGGRSG 219
Query: 182 IIVNCAKKFCNYCKKPGHIIKEC 204
+ C YC K GH C
Sbjct: 220 NRGRGQRPHCTYCNKLGHTRDRC 242
>gi|299930105|gb|ADJ58260.1| gag protein [Human immunodeficiency virus 1]
Length = 500
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 161 GKSKGRDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
G KG+ ++++CF+C + H+ NC KK C C K GH +K+C R N
Sbjct: 380 GNFKGQGQKRIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDCTERQAN 432
>gi|147860339|emb|CAN81881.1| hypothetical protein VITISV_010825 [Vitis vinifera]
Length = 569
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 43/212 (20%), Positives = 87/212 (41%), Gaps = 32/212 (15%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQ-DNTAKCFHLEYEIARYSQGDLSIQ 59
M W+M S++ ++ AK +W+ + Y++ +N+++ F L + QG+ +
Sbjct: 1 MAWLMHSMEDNIANTYILIPKAKRIWDAVTLAYSKLENSSQMFELRNKARNLRQGEHDVT 60
Query: 60 NYLSGIQNLWAKYVDMIYVQV---PIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLM 116
Y + LW + +D+ P +++ + + E + FL L R +
Sbjct: 61 QYYIDLTKLWQE-LDLFNSPAWKDPDDAIL-YRNMVESDRIYDFLAGLNKGLDDVRGRPL 118
Query: 117 NRDLSPSLDVCFKELLREEQR----LATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQ 172
P ++ F E+ REE R L TI + + + +A ++ +++ R
Sbjct: 119 GFKPLPQIEEIFVEIRREECRQCVTLGGSTI---STIETSTLAARGSNNRAESRG----- 170
Query: 173 CFSCKEYRHIIVNCAKKFCNYCKKPGHIIKEC 204
KK+C++C+KP H C
Sbjct: 171 --------------NKKWCDHCQKPNHTKDTC 188
>gi|254667217|gb|ACT76567.1| gag protein [Human immunodeficiency virus 1]
Length = 166
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTR 207
+D ++++CF+C H+ NC KK C C K GH +K+CP R
Sbjct: 51 KDQKRIKCFNCGREGHLARNCRAPRKKGCWKCGKEGHQMKDCPER 95
>gi|147846217|emb|CAN79491.1| hypothetical protein VITISV_033372 [Vitis vinifera]
Length = 293
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQ-DNTAKCFHLEYEIARYSQGDLSIQ 59
M W++ +++ + N Y TAK++W+ + ++Y+ N ++ + LE ++ QG+ ++
Sbjct: 88 MDWLLNVMEEDISANYMCYSTAKELWDNINQMYSDFGNKSQVYELEMKLREIQQGNNTVT 147
Query: 60 NYLSGIQNLW 69
Y + ++ LW
Sbjct: 148 KYFNTLKGLW 157
>gi|6642775|gb|AAF20282.1| gag-pol polyprotein [Vitis vinifera]
Length = 581
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 102/239 (42%), Gaps = 39/239 (16%)
Query: 4 IMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHL-----EYEIARYSQGDLSI 58
+ +V S+ + + +A ++WEYLK+ Y D K + E+E+ + + D ++
Sbjct: 73 LFAAVSPSIFIKIMKIDSAAEIWEYLKEEYKGDERIKNMQVMNLIREFEMKKMRESD-AV 131
Query: 59 QNYLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMN- 117
++Y + + ++ A V ++ + E + + L+ L +Y+A S+L N
Sbjct: 132 KDYAAQLLSI-ANKVRLLGKEFSNEKIV-----------QKILVTLPKKYEATISSLENS 179
Query: 118 RDLSPSLDVCFKELLR-----EEQRLATQTILQ----QNKMHDNAIAYAAA--HGKSKGR 166
+DLS + ELL E++RL Q Q +MH NA + KS G
Sbjct: 180 KDLS---TISLTELLHSLEAVEQRRLMRQGDTAEGAFQARMHKNAGHKNGKVNNNKSCGN 236
Query: 167 DMRQ---VQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQNCQASQAVVA 219
+ + C C++ H C + CN C K GH+ + C + Q +A
Sbjct: 237 NQKNGVFPPCPHCQKTNHSPQKCWWETRCECNKCGKQGHVERICKINSRKKLVQQLTIA 295
>gi|414152012|gb|AFW99170.1| gag polyprotein [Equine infectious anemia virus]
Length = 487
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 65/168 (38%), Gaps = 27/168 (16%)
Query: 54 GDLSIQNYLSGIQNLWAKYVDMIYVQVPIES--------LADVQGVHEQSKRDQFLMK-L 104
G QN G + + +VD + QV E L D + ++ + M+ L
Sbjct: 270 GKPKAQNIRQGPKEPYPDFVDRLLSQVKSEGHPSEITKFLTDTLTIQNANEECKAAMRHL 329
Query: 105 RPEYKAARSNLMNRDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSK 164
RPE RD+ Q ++ + + +A + G K
Sbjct: 330 RPEDTLEEKLYACRDIG----------------TTKQKMMLLARALQSGLAGSMKGGICK 373
Query: 165 GRDMRQVQ-CFSCKEYRHIIVNC-AKKFCNYCKKPGHIIKECPTRPQN 210
G ++ Q C++C + H+ C A K C CK+PGH K+C P+N
Sbjct: 374 GGPLKAPQTCYNCGKPGHLSSQCRAPKVCFKCKQPGHFSKQCRNAPKN 421
>gi|299930103|gb|ADJ58259.1| gag protein [Human immunodeficiency virus 1]
Length = 500
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 161 GKSKGRDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
G KG+ ++++CF+C + H+ NC KK C C K GH +K+C R N
Sbjct: 380 GNFKGQGQKRIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDCTERQAN 432
>gi|147839927|emb|CAN74901.1| hypothetical protein VITISV_010116 [Vitis vinifera]
Length = 844
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/132 (21%), Positives = 62/132 (46%), Gaps = 6/132 (4%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQD-NTAKCFHLEYEIARYSQGDLSIQ 59
M W S+ + TAKD+W+ +++ Y++ + A+ + ++ + QG ++
Sbjct: 34 MAWSWNSMTPEISDTCMFLATAKDIWDTIQQTYSKARDAAQVYEVKVKTIAAKQGSKTVT 93
Query: 60 NYLSGIQNLWAKYVDMIYVQVP-IESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNR 118
Y + ++ LW + ++ +E ++ EQ + FL++L PE+ R ++++
Sbjct: 94 EYANQLKALWQELDHYRVIKTKCLEDFVVLKDFIEQDRVYDFLVRLNPEFDQVRIQILSK 153
Query: 119 DLSPSLDVCFKE 130
P CF E
Sbjct: 154 QEVP----CFNE 161
>gi|414152005|gb|AFW99164.1| gag polyprotein [Equine infectious anemia virus]
gi|414152019|gb|AFW99176.1| gag polyprotein [Equine infectious anemia virus]
Length = 487
Score = 42.0 bits (97), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 65/168 (38%), Gaps = 27/168 (16%)
Query: 54 GDLSIQNYLSGIQNLWAKYVDMIYVQVPIES--------LADVQGVHEQSKRDQFLMK-L 104
G QN G + + +VD + QV E L D + ++ + M+ L
Sbjct: 270 GKPKAQNIRQGPKEPYPDFVDRLLSQVKSEGHPSEITKFLTDTLTIQNANEECKAAMRHL 329
Query: 105 RPEYKAARSNLMNRDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSK 164
RPE RD+ Q ++ + + +A + G K
Sbjct: 330 RPEDTLEEKLYACRDIG----------------TTKQKMMLLARALQSGLAGSMKGGICK 373
Query: 165 GRDMRQVQ-CFSCKEYRHIIVNC-AKKFCNYCKKPGHIIKECPTRPQN 210
G ++ Q C++C + H+ C A K C CK+PGH K+C P+N
Sbjct: 374 GGPLKAPQTCYNCGKPGHLSSQCRAPKVCFKCKQPGHFSKQCRNAPKN 421
>gi|300720099|gb|ADK33038.1| gag protein [Human immunodeficiency virus 1]
Length = 492
Score = 42.0 bits (97), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + HI NC KK C C + GH +KECP R N
Sbjct: 384 RIVKCFNCGKEGHIAKNCRAPRKKGCWKCGQEGHQMKECPGRQAN 428
>gi|299930353|gb|ADJ58384.1| gag protein [Human immunodeficiency virus 1]
Length = 500
Score = 42.0 bits (97), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 161 GKSKGRDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
G KG+ ++++CF+C + H+ NC KK C C K GH +K+C R N
Sbjct: 380 GNFKGQGQKRIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDCTERQAN 432
>gi|5059041|gb|AAD38881.1|AF119819_1 gag polyprotein [Human immunodeficiency virus 1]
Length = 498
Score = 42.0 bits (97), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R ++CF+C + H+ NC KK C C K GH +K+CP R N
Sbjct: 387 RSIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDCPERQAN 431
>gi|82571406|gb|ABB84163.1| gag protein [Human immunodeficiency virus 1]
Length = 492
Score = 42.0 bits (97), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + HI NC KK C C + GH +KECP R N
Sbjct: 384 RIVKCFNCGKEGHIAKNCRAPRKKGCWECGQEGHQMKECPGRQAN 428
>gi|45360169|gb|AAS59204.1| gag protein [Human immunodeficiency virus 1]
Length = 491
Score = 42.0 bits (97), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 161 GKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
G KG+ R V+CF+C HI NC KK C C + GH +K+CP R N
Sbjct: 376 GNFKGQ-RRTVKCFNCGREGHIARNCRAPRKKGCWKCGREGHQMKDCPERQAN 427
>gi|403291696|ref|XP_003936912.1| PREDICTED: cellular nucleic acid-binding protein-like [Saimiri
boliviensis boliviensis]
Length = 169
Score = 42.0 bits (97), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 3/44 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNCAKKF---CNYCKKPGHIIKECPT 206
+D +V+C+ C E H+ ++C+K C C KPGH+ +ECP+
Sbjct: 122 KDCAKVKCYRCGETGHMAISCSKAIQVNCYRCGKPGHLARECPS 165
>gi|299930399|gb|ADJ58407.1| gag protein [Human immunodeficiency virus 1]
Length = 500
Score = 42.0 bits (97), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 161 GKSKGRDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
G KG+ ++++CF+C + H+ NC KK C C K GH +K+C R N
Sbjct: 380 GNFKGQGQKRIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDCTERQAN 432
>gi|147768613|emb|CAN67165.1| hypothetical protein VITISV_037677 [Vitis vinifera]
Length = 571
Score = 42.0 bits (97), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 57/248 (22%), Positives = 100/248 (40%), Gaps = 47/248 (18%)
Query: 4 IMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHL-----EYEIARYSQGDLSI 58
+ +V S+ + + +A +WEYLK Y D + + E+EI + + D ++
Sbjct: 73 LFAAVSPSIFIKIMKIDSAAKIWEYLKGEYKGDERIRNMQVMNLIREFEIKKMRESD-AV 131
Query: 59 QNYLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMN- 117
++Y + + ++ A V ++ + E + + L+ L +Y+A S+L N
Sbjct: 132 KDYAAQLLSI-ADKVRLLGKEFSNEKIV-----------QKILVTLPEKYEATISSLENS 179
Query: 118 RDLSPSLDVCFKELLR-----EEQRL---------ATQTILQQNKMHDNAIAYAAAHGKS 163
+DLS + ELL E++RL A Q +Q+N H N +
Sbjct: 180 KDLST---ISLTELLHSLEAVEQRRLMRQGDTTEGAFQARMQKNAGHKNGKMNNNKPCSN 236
Query: 164 KGRDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN--------CQ 212
++ C CK+ H C CN C K GH+ + C + Q CQ
Sbjct: 237 NQKNGVFPPCPHCKKTNHSPQKCWWRPDVKCNKCGKQGHVERICKNQQQEETSAAVDYCQ 296
Query: 213 ASQAVVAS 220
Q A+
Sbjct: 297 EEQLFAAT 304
>gi|253326816|gb|ACT31322.1| gag polyprotein [Equine infectious anemia virus]
Length = 486
Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 66/168 (39%), Gaps = 27/168 (16%)
Query: 54 GDLSIQNYLSGIQNLWAKYVDMIYVQVPIES--------LADVQGVHEQSKRDQFLMK-L 104
G QN G + ++++VD + Q+ E L D + ++ + M+ L
Sbjct: 270 GKPRAQNIRQGPKEPYSEFVDRLLSQIKSEGHSTEITKFLTDTLTIQNANEECKTAMRHL 329
Query: 105 RPEYKAARSNLMNRDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSK 164
RPE RD+ Q ++ K + +A G K
Sbjct: 330 RPEDTLEDKLYACRDIG----------------TVRQKMMLLAKALQSGLAGPMKGGIIK 373
Query: 165 GRDMRQVQ-CFSCKEYRHIIVNC-AKKFCNYCKKPGHIIKECPTRPQN 210
G ++ Q C++C + H+ C A K C CK+PGH K+C P+N
Sbjct: 374 GGPLKARQTCYNCGKXGHLSSQCRAPKVCFKCKEPGHFSKQCRNAPKN 421
>gi|147791344|emb|CAN66054.1| hypothetical protein VITISV_009511 [Vitis vinifera]
Length = 175
Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 40/68 (58%)
Query: 2 TWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNY 61
+WI+ +++ + ++ Y TA ++WE L + ++Q N + F ++ +IA Q LS+ Y
Sbjct: 89 SWIVNTLNPEIADSVIYYSTAHEVWEDLCERFSQSNAPRIFEIQRDIACLRQEQLSVSAY 148
Query: 62 LSGIQNLW 69
+ ++ LW
Sbjct: 149 XTKLKGLW 156
>gi|255986604|gb|ACU50685.1| gag protein [Human immunodeficiency virus 1]
Length = 503
Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 152 NAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRP 208
N+ A G KG+ + V+CF+C + HI NC KK C C K GH +KEC R
Sbjct: 375 NSAAIMVQRGNYKGQ-RKTVKCFNCGKEGHISXNCRAPRKKGCWKCGKEGHQMKECTERQ 433
Query: 209 QN 210
N
Sbjct: 434 AN 435
>gi|259126515|gb|ACV94228.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Query: 152 NAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRP 208
N A G KG+ R+++CF+C + H+ NC KK C C K GH +KEC R
Sbjct: 372 NTAAIMMQRGNFKGQ--RRIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKECTERQ 429
Query: 209 QN 210
N
Sbjct: 430 AN 431
>gi|213138374|gb|ACJ44847.1| gag protein [Human immunodeficiency virus 1]
Length = 490
Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + HI NC KK C C + GH +KECP R N
Sbjct: 382 RIVKCFNCGKEGHIAKNCRAPRKKGCWECGQEGHQMKECPGRQAN 426
>gi|395754126|ref|XP_003779713.1| PREDICTED: zinc finger CCHC domain-containing protein 13-like
[Pongo abelii]
Length = 170
Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNCAKKF---CNYCKKPGHIIKECPT 206
+D QV+C+ C E H+ +NC+K C C K GH+ +ECP+
Sbjct: 123 KDCAQVKCYRCGEIGHVAINCSKASQVNCYRCGKSGHLARECPS 166
>gi|386306768|gb|AFJ05366.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 505
Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + RHI NC KK C C K GH +K+C R N
Sbjct: 388 RMVKCFNCGKERHIARNCRAPRKKGCWKCGKEGHQMKDCTERQAN 432
>gi|408396967|gb|EKJ76118.1| hypothetical protein FPSE_03593 [Fusarium pseudograminearum CS3096]
Length = 1380
Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 172 QCFSCKEYRHIIVNCAKKFCNYCKKPGHIIKECP 205
+CF+C EY H+ NC ++ C++C H+ K+CP
Sbjct: 1200 KCFNCGEYGHMKSNCPERQCHFCGDKDHLKKDCP 1233
>gi|1899037|gb|AAB49922.1| Gag polyprotein [Feline immunodeficiency virus]
gi|51980734|gb|AAU20797.1| gag protein [Feline immunodeficiency virus]
Length = 498
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 64/150 (42%), Gaps = 18/150 (12%)
Query: 64 GIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRDLSPS 123
G + +A ++D +Y Q+ E + ++ K+ L PE K A S+L
Sbjct: 303 GPKEDYASFIDRLYAQIDQEQNSPEVKIY--LKQSLSLANANPECKKAMSHL-------K 353
Query: 124 LDVCFKELLREEQRLATQT-----ILQQNKMHDNAIAYAAAHGKSKGRDMRQVQ---CFS 175
+ +E LR Q + + + + Q + GK +G + R Q CF+
Sbjct: 354 PESTLEEKLRACQEVGSTSYKMNMLAQALQQQSQVCQVQQGRGKPQGNNRRPGQSLKCFN 413
Query: 176 CKEYRHIIVNC-AKKFCNYCKKPGHIIKEC 204
C + H+ NC A + CN C K GHI +C
Sbjct: 414 CGKPGHLARNCRAPRKCNKCGKAGHIATDC 443
>gi|206129664|gb|ACI05429.1| gag protein [Human immunodeficiency virus 1]
Length = 499
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 147 NKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKE 203
++M +N+ A G + + R V+CF+C + HI NC KK C C K GH +KE
Sbjct: 369 SQMTNNSAAIMMQKGNFRNQK-RNVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKE 427
Query: 204 CPTRPQN 210
C R N
Sbjct: 428 CTERQAN 434
>gi|259126533|gb|ACV94237.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Query: 152 NAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRP 208
N A G KG+ R+++CF+C + H+ NC KK C C K GH IK+C R
Sbjct: 372 NTAAIMMQRGNFKGQ--RRIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQIKDCTERQ 429
Query: 209 QN 210
N
Sbjct: 430 AN 431
>gi|259126523|gb|ACV94232.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Query: 152 NAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRP 208
N A G KG+ R+++CF+C + H+ NC KK C C K GH +KEC R
Sbjct: 372 NTAAIMMQRGNFKGQ--RRIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKECTERQ 429
Query: 209 QN 210
N
Sbjct: 430 AN 431
>gi|449455340|ref|XP_004145411.1| PREDICTED: uncharacterized protein LOC101209213 [Cucumis sativus]
Length = 620
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 59/126 (46%), Gaps = 4/126 (3%)
Query: 21 TAKDMWEYLKKVYNQ-DNTAKCFHLEYEIARYSQGDLSIQNYLSGIQNLWAKYVDMIYVQ 79
TAKD+W+ + +Y++ N ++ + L ++ QG + + ++ + + +W + +D+
Sbjct: 174 TAKDIWDTAQTLYSKRQNASRLYTLRKQVHECKQGTMDVTSFFNKLSLIWQE-MDLCREL 232
Query: 80 VPIESLADVQ--GVHEQSKRDQFLMKLRPEYKAARSNLMNRDLSPSLDVCFKELLREEQR 137
V + VQ + E + FL L P++ R ++ PSL E+ EE R
Sbjct: 233 VWRDPTDGVQYSRIEENDRIYDFLAGLNPKFDVVRGQILGHRSIPSLMKVCSEIRLEEDR 292
Query: 138 LATQTI 143
+ I
Sbjct: 293 TSAMNI 298
>gi|259126513|gb|ACV94227.1| gag protein [Human immunodeficiency virus 1]
gi|259126527|gb|ACV94234.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Query: 152 NAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRP 208
N A G KG+ R+++CF+C + H+ NC KK C C K GH IK+C R
Sbjct: 372 NTAAIMMQRGNFKGQ--RRIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQIKDCTERQ 429
Query: 209 QN 210
N
Sbjct: 430 AN 431
>gi|147844355|emb|CAN80020.1| hypothetical protein VITISV_004053 [Vitis vinifera]
Length = 283
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 64/139 (46%), Gaps = 6/139 (4%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVY-NQDNTAKCFHLEYEIARYSQGDLSIQ 59
M+W++ ++D + N Y TA ++W K+ Y B DNTA ++ QG++ +
Sbjct: 86 MSWLINAMDTEIGQNFLFYDTAHEIWMAAKETYSBSDNTADLLDIKGAPHDLRQGEMIVT 145
Query: 60 NYLSGIQNLWAKYVDMIYVQVPIESLADV---QGVHEQSKRDQFLMKLRPEYKAARSNLM 116
+Y + + W + +D ++ + E D + + E+ + +FL+ L R ++
Sbjct: 146 HYYNTLSRFWQQ-LD-VFETMDWECXXDASRYKXIIEKERVFKFLLGLDKSLDEVRGRIL 203
Query: 117 NRDLSPSLDVCFKELLREE 135
P++ F R+E
Sbjct: 204 GTKPLPTIREAFFRGRRKE 222
>gi|259126552|gb|ACV94246.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Query: 152 NAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRP 208
N A G KG+ R+++CF+C + H+ NC KK C C K GH IK+C R
Sbjct: 372 NTAAIMMQRGNFKGQ--RRIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQIKDCTERQ 429
Query: 209 QN 210
N
Sbjct: 430 AN 431
>gi|328834587|gb|AEB52980.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 500
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQNC 211
R V+CF+C + HI NC KK C C K GH +K+C R NC
Sbjct: 388 RIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANC 433
>gi|147863420|emb|CAN79357.1| hypothetical protein VITISV_025405 [Vitis vinifera]
Length = 581
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 53/250 (21%), Positives = 103/250 (41%), Gaps = 51/250 (20%)
Query: 4 IMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHL-----EYEIARYSQGDLSI 58
+ +V S+ + + +A ++WEYLK+ Y D K + E+E+ + + D+ +
Sbjct: 73 LFAAVSPSIFIKIMKIDSAAEIWEYLKEEYKGDERIKNMQVMNLIREFEMKKMRESDV-V 131
Query: 59 QNYLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMN- 117
++Y + + ++ A V ++ + E + + L+ L +Y+A S+L N
Sbjct: 132 KDYAAQLLSI-ADKVRLLGKEFSNEKIV-----------QKILVTLPEKYEATISSLENS 179
Query: 118 RDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQ----- 172
+DLS + ELL + + + +++Q + A+ A K+ G + ++
Sbjct: 180 KDLS---TISLTELLHSLEAVEQRRLMRQGDTAEG--AFQARMQKNAGHKIGKMNNNKPC 234
Query: 173 -----------CFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN-------- 210
C CK+ H C CN C K GH+ + C + Q
Sbjct: 235 SNNQKNGVFPPCPHCKKTNHSPQKCWWRPDVKCNKCGKQGHVERICKNQQQEETSAAVDY 294
Query: 211 CQASQAVVAS 220
CQ Q A+
Sbjct: 295 CQEEQLFAAT 304
>gi|147822540|emb|CAN63946.1| hypothetical protein VITISV_035427 [Vitis vinifera]
Length = 575
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 57/248 (22%), Positives = 102/248 (41%), Gaps = 47/248 (18%)
Query: 4 IMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHL-----EYEIARYSQGDLSI 58
+ +V S+ + + +A ++WEYLK+ Y D K + E+E+ + + D ++
Sbjct: 73 LFAAVSPSIFIKIMKIDSAAEIWEYLKEEYKGDERIKNMQVMNLIREFEMKKMRESD-AV 131
Query: 59 QNYLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMN- 117
++Y + + ++ K V ++ + E + + L+ L +Y+A S+L N
Sbjct: 132 KDYAAQLLSISDK-VRLLGKEFSNEKIV-----------QKILVTLPEKYEATISSLENS 179
Query: 118 RDLSPSLDVCFKELLR-----EEQRL---------ATQTILQQNKMHDNAIAYAAAHGKS 163
+DLS + ELL E++RL A Q +Q+N H N +
Sbjct: 180 KDLS---TISLTELLHSLEAVEQRRLMRQGDTAEGAFQARMQKNAGHKNEKMNNNKPCSN 236
Query: 164 KGRDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN--------CQ 212
++ C CK+ H C CN C K GH+ + C + Q CQ
Sbjct: 237 NQKNGVFPPCPHCKKTNHSPQKCWWRPDVKCNKCGKQGHVERICKNQQQEETSAAVDYCQ 296
Query: 213 ASQAVVAS 220
Q A+
Sbjct: 297 EEQLFAAT 304
>gi|259126541|gb|ACV94241.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Query: 152 NAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRP 208
N A G KG+ R+++CF+C + H+ NC KK C C K GH IK+C R
Sbjct: 372 NTAAIMMQRGNFKGQ--RRIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQIKDCTERQ 429
Query: 209 QN 210
N
Sbjct: 430 AN 431
>gi|27227831|dbj|BAC45013.1| gag-pol polyprotein [Human immunodeficiency virus 1]
Length = 871
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + HI NC KK C C K GH +K+CP R N
Sbjct: 383 RIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCPERQAN 427
>gi|414152026|gb|AFW99182.1| gag polyprotein [Equine infectious anemia virus]
Length = 487
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 65/168 (38%), Gaps = 27/168 (16%)
Query: 54 GDLSIQNYLSGIQNLWAKYVDMIYVQVPIES--------LADVQGVHEQSKRDQFLMK-L 104
G QN G + + +VD + QV E L D + ++ + M+ L
Sbjct: 270 GKPKAQNIRQGPKEPYPDFVDRLLSQVKSEGHPSEITKFLTDTLTIQNANEECKAAMRHL 329
Query: 105 RPEYKAARSNLMNRDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSK 164
RPE RD+ + Q ++ + + +A G K
Sbjct: 330 RPEDTLEEKLYACRDIGTT----------------KQKMMLLARALQSGLAGTMKGGICK 373
Query: 165 GRDMRQVQ-CFSCKEYRHIIVNC-AKKFCNYCKKPGHIIKECPTRPQN 210
G ++ Q C++C + H+ C A K C CK+PGH K+C P+N
Sbjct: 374 GGPLKASQTCYNCGKPGHLSSQCRAPKVCFKCKQPGHFSKQCRNAPKN 421
>gi|55275176|gb|AAV49396.1| gag protein [Human immunodeficiency virus 1]
Length = 500
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
+ V+CF+C + RHI NC KK C C+K GH +K+C R N
Sbjct: 388 KPVKCFNCSKERHIAKNCRAPRKKGCWKCRKEGHQMKDCTKRQAN 432
>gi|409684443|gb|AFV34347.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
+D ++++CF+C H+ NC KK C C K GH++K+C R N
Sbjct: 383 KDQKRIKCFNCGREGHLARNCRAPRKKGCWKCGKEGHLMKDCTERQAN 430
>gi|170778680|gb|ACB36740.1| gag protein [Human immunodeficiency virus 1]
Length = 500
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 162 KSKGRDMRQ-VQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
K GR+ R+ V+CF+C + HI NC KK C C K GH +K+C R N
Sbjct: 380 KGNGRNQRKGVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKDCTERQAN 432
>gi|45361066|gb|AAS59297.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 151 DNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTR 207
+N I G KG + ++CF+C + HI NC K+ C C K GH +K+C R
Sbjct: 370 NNNIVMMMQKGNFKGPQRKTIKCFNCGKEGHIAKNCRAPRKRGCWKCGKEGHQMKDCTER 429
Query: 208 PQN 210
N
Sbjct: 430 QAN 432
>gi|46486646|gb|AAS98751.1| gag protein [Human immunodeficiency virus 1]
gi|213137185|gb|ACJ44277.1| gag protein [Human immunodeficiency virus 1]
Length = 492
Score = 41.6 bits (96), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + HI NC KK C C K GH +KEC R N
Sbjct: 384 RTVKCFNCGKEGHIARNCGAPRKKGCWKCGKEGHQMKECTERQAN 428
>gi|166025562|gb|ABY78091.1| gag protein [Human immunodeficiency virus 1]
Length = 500
Score = 41.6 bits (96), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 162 KSKGRDMRQ-VQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
+ GRD R+ V+CF+C + HI NC KK C C + GH +K+C R N
Sbjct: 378 RGNGRDQRKTVKCFNCGKEGHIAKNCRAPRKKGCWKCGREGHQMKDCTERQAN 430
>gi|146400053|gb|ABQ28724.1| gag protein [Equine infectious anemia virus]
Length = 488
Score = 41.6 bits (96), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 67/168 (39%), Gaps = 27/168 (16%)
Query: 54 GDLSIQNYLSGIQNLWAKYVDMIYVQVPIES--------LADVQGVHEQSKRDQFLMK-L 104
G QN G + +++++D + Q+ E L D + ++ + M+ L
Sbjct: 270 GKPKAQNIRQGPKEPYSEFIDRLLSQIKSEGHPSEITKFLTDTLTIQNANEECRNAMRHL 329
Query: 105 RPEYKAARSNLMNRDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSK 164
RPE RD+ + Q +L + + +A G K
Sbjct: 330 RPEDTLEEKMYACRDIGST----------------KQKMLLLARALQSGLAGPMKGGILK 373
Query: 165 GRDMRQVQ-CFSCKEYRHIIVNC-AKKFCNYCKKPGHIIKECPTRPQN 210
G ++ Q C++C + H+ C A K C C++PGH K+C P+N
Sbjct: 374 GGPLKAAQTCYNCGKPGHLSSQCRAPKVCFKCRQPGHFSKQCRNAPKN 421
>gi|300720414|gb|ADK33248.1| gag protein [Human immunodeficiency virus 1]
Length = 492
Score = 41.6 bits (96), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 143 ILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGH 199
+L + N++ G KG R V+CF+C + HI NC KK C C K GH
Sbjct: 359 VLAEAMSQTNSVNIMMQRGNFKG-SKRTVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGH 417
Query: 200 IIKECPTRPQN 210
+K+C R N
Sbjct: 418 QMKDCTERQAN 428
>gi|242030878|gb|ACS77438.1| gag protein [Human immunodeficiency virus 1]
Length = 459
Score = 41.6 bits (96), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 143 ILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGH 199
+L + N+ A G KG R V+CF+C + HI NC KK C C K GH
Sbjct: 342 VLAEAMSQANSTAVLMQRGNFKG-PKRIVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGH 400
Query: 200 IIKECPTRPQN 210
IK+C R N
Sbjct: 401 QIKDCTERQAN 411
>gi|225581270|gb|ACN94804.1| gag protein [Human immunodeficiency virus 1]
Length = 500
Score = 41.6 bits (96), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 162 KSKGRDMRQ-VQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
K GR+ R+ V+CF+C + HI NC KK C C K GH +K+C R N
Sbjct: 380 KGNGRNQRKGVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKDCTERQAN 432
>gi|342887520|gb|EGU87002.1| hypothetical protein FOXB_02396 [Fusarium oxysporum Fo5176]
Length = 457
Score = 41.6 bits (96), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Query: 172 QCFSCKE--YRHIIVNCAKK---FCNYCKKPGHIIKECPTRP 208
+CF C E + H C C +CK+PGH+IKECP +P
Sbjct: 59 KCFGCGETGFSHRRAECPNPQEMTCRFCKQPGHMIKECPDKP 100
>gi|242031734|gb|ACS77857.1| gag protein [Human immunodeficiency virus 1]
Length = 453
Score = 41.6 bits (96), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 143 ILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGH 199
+L + N + G KG R V+CF+C + RHI NC KK C C + GH
Sbjct: 342 VLAEAMSQANNVNIMMQRGNFKG-SKRTVKCFNCGKERHIARNCRAPRKKGCWKCGREGH 400
Query: 200 IIKECPTRPQN 210
+K+C R N
Sbjct: 401 QMKDCTERQAN 411
>gi|242028613|gb|ACS76337.1| gag protein [Human immunodeficiency virus 1]
Length = 451
Score = 41.6 bits (96), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + HI NC +KK C C K GH++K+C R N
Sbjct: 367 RTVKCFNCGKEGHIARNCRAPSKKGCWKCGKEGHLMKDCNERQAN 411
>gi|255069201|dbj|BAH89136.1| Gag [Human immunodeficiency virus 1]
gi|255069221|dbj|BAH89154.1| Gag [Human immunodeficiency virus 1]
Length = 493
Score = 41.6 bits (96), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 162 KSKGRDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
KS R R+++CF+C + H+ NC KK C C K GH +K+C R N
Sbjct: 377 KSNFRGQRRIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDCTERQAN 428
>gi|3193273|gb|AAD03326.1| gag-pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 1433
Score = 41.6 bits (96), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
R+ R+++CF+C + HI NC KK C C K GH +K+C R N
Sbjct: 385 RNQRKIKCFNCGKEGHISKNCRAPRKKGCWKCGKEGHQMKDCTERQAN 432
>gi|242027693|gb|ACS75882.1| gag protein [Human immunodeficiency virus 1]
Length = 453
Score = 41.6 bits (96), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R ++CF+C + HI NC K+ C C K GH +KECP R N
Sbjct: 367 RIIKCFNCGKEGHIARNCRAPRKRGCWKCGKEGHQMKECPERQAN 411
>gi|255069211|dbj|BAH89145.1| Gag [Human immunodeficiency virus 1]
Length = 493
Score = 41.6 bits (96), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 162 KSKGRDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
KS R R+++CF+C + H+ NC KK C C K GH +K+C R N
Sbjct: 377 KSNFRGQRRIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDCTERQAN 428
>gi|225056187|gb|ACN80898.1| gag protein [Human immunodeficiency virus 1]
Length = 507
Score = 41.6 bits (96), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 162 KSKGRDMRQ-VQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
+S RD R+ V+CF+C + HI NC KK C C K GH +K+C R N
Sbjct: 388 RSNFRDQRKIVKCFNCGKVGHIAKNCKAPGKKGCWKCGKEGHQMKDCTERQAN 440
>gi|147858492|emb|CAN81397.1| hypothetical protein VITISV_018726 [Vitis vinifera]
Length = 567
Score = 41.6 bits (96), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 56/248 (22%), Positives = 101/248 (40%), Gaps = 47/248 (18%)
Query: 4 IMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHL-----EYEIARYSQGDLSI 58
+ +V S+ + + + ++WEYLK+ Y D K + E+E+ + + D ++
Sbjct: 73 LFAAVSPSIFIKIMKIDSTAEIWEYLKEEYKGDERIKNMQVMNLIREFEMKKMRESD-AV 131
Query: 59 QNYLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMN- 117
++Y + + ++ A V ++ + E + + L+ L +Y+A S+L N
Sbjct: 132 KDYAAQLLSI-ADKVRLLGKEFSNEKIV-----------QKILVTLPEKYEATISSLENS 179
Query: 118 RDLSPSLDVCFKELLR-----EEQRL---------ATQTILQQNKMHDNAIAYAAAHGKS 163
+DLS + ELL E++RL A Q +Q+N H N +
Sbjct: 180 KDLS---TISLTELLHSLEAVEQRRLMRQGDTAEGAFQARMQKNAGHKNGKMNNNKPCSN 236
Query: 164 KGRDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN--------CQ 212
++ C CK+ H C CN C K GH+ + C + Q CQ
Sbjct: 237 NQKNGVFPPCPHCKKTNHSPQKCWWRPDVKCNKCGKQGHVERICKNQQQEETSAAVDYCQ 296
Query: 213 ASQAVVAS 220
Q A+
Sbjct: 297 EEQLFAAT 304
>gi|242028669|gb|ACS76365.1| gag protein [Human immunodeficiency virus 1]
Length = 451
Score = 41.6 bits (96), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + HI NC +KK C C K GH++K+C R N
Sbjct: 367 RTVKCFNCGKEGHIARNCRAPSKKGCWKCGKEGHLMKDCNERQAN 411
>gi|259127100|gb|ACV94421.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 41.6 bits (96), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R R+++CF+C + H+ NC KK C C K GH +KEC R N
Sbjct: 383 RGQRRIKCFNCGKEGHLAKNCRAPRKKGCWKCGKEGHQMKECTERQAN 430
>gi|154997046|gb|ABS89203.1| gag protein [Human immunodeficiency virus 1]
Length = 505
Score = 41.6 bits (96), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Query: 162 KSKGRDMRQV-QCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
KS R+ R++ +CF+C + HI NC +K C C K GH +K+CP R N
Sbjct: 385 KSNFRNQRKIIKCFNCGKEGHIAKNCRAPRRKGCWKCGKEGHQMKDCPERQAN 437
>gi|3193281|gb|AAD03334.1| gag protein [Human immunodeficiency virus 1]
Length = 495
Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
R+ R+++CF+C + HI NC KK C C K GH +K+C R N
Sbjct: 385 RNQRKIKCFNCGKEGHISKNCRAPRKKGCWKCGKEGHQMKDCTERQAN 432
>gi|409684305|gb|AFV34223.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
RD ++++CF+C + H+ NC KK C C K GH +K+C R N
Sbjct: 383 RDQKRIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDCTERQAN 430
>gi|242028699|gb|ACS76380.1| gag protein [Human immunodeficiency virus 1]
Length = 451
Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + HI NC +KK C C K GH++K+C R N
Sbjct: 367 RTVKCFNCGKEGHIARNCRAPSKKGCWKCGKEGHLMKDCNERQAN 411
>gi|242028693|gb|ACS76377.1| gag protein [Human immunodeficiency virus 1]
Length = 451
Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + HI NC +KK C C K GH++K+C R N
Sbjct: 367 RTVKCFNCGKEGHIARNCRAPSKKGCWKCGKEGHLMKDCNERQAN 411
>gi|227057911|gb|ACP18923.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 162 KSKGRDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
KS R R+++CF+C + H+ NC KK C C K GH +K+C R N
Sbjct: 380 KSNFRGQRKIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDCTERQAN 431
>gi|320410215|gb|ADW26888.1| gag protein [Human immunodeficiency virus 1]
Length = 503
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
+ V+CF+C + HI NC KK C C K GH +K+CP R N
Sbjct: 391 KPVKCFNCGKDGHIARNCKAPRKKGCWKCGKEGHQMKDCPNRQAN 435
>gi|288819398|gb|ADC55407.1| gag protein [Human immunodeficiency virus 1]
gi|288819400|gb|ADC55408.1| gag protein [Human immunodeficiency virus 1]
Length = 501
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
+ V+CF+C + HI NC KK C C K GH +K+CP R N
Sbjct: 389 KTVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCPERQAN 433
>gi|259127096|gb|ACV94419.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R R+++CF+C + H+ NC KK C C K GH +KEC R N
Sbjct: 383 RGQRRIKCFNCGKEGHLAKNCRAPRKKGCWKCGKEGHQMKECTERQAN 430
>gi|383506255|gb|AFH37786.1| gag protein [Human immunodeficiency virus 1]
Length = 503
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
+ V+CF+C + HI NC KK C C K GH +K+CP R N
Sbjct: 391 KPVKCFNCGKDGHIARNCKAPRKKGCWKCGKEGHQMKDCPNRQAN 435
>gi|55735950|gb|AAV59683.1| gag protein [Human immunodeficiency virus 1]
Length = 495
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 166 RDMRQ-VQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
RD R+ V+CF+C + HI NC KK C C K GH +KEC R N
Sbjct: 383 RDQRKTVKCFNCGKVGHIAKNCRAPRKKGCWKCGKEGHQMKECTERQAN 431
>gi|320410218|gb|ADW26889.1| gag protein [Human immunodeficiency virus 1]
Length = 503
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
+ V+CF+C + HI NC KK C C K GH +K+CP R N
Sbjct: 391 KPVKCFNCGKDGHIARNCKAPRKKGCWKCGKEGHQMKDCPNRQAN 435
>gi|259128559|gb|ACV94990.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Query: 161 GKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
G KG+ ++++CF+C + H+ NC KK C C K GH +K+C RP N
Sbjct: 380 GNFKGQ--KRIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDCTERPAN 430
>gi|259127116|gb|ACV94427.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R R+++CF+C + H+ NC KK C C K GH +KEC R N
Sbjct: 383 RGQRRIKCFNCGKEGHLAKNCRAPRKKGCWKCGKEGHQMKECTERQAN 430
>gi|259127085|gb|ACV94416.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R R+++CF+C + H+ NC KK C C K GH +KEC R N
Sbjct: 383 RGQRRIKCFNCGKEGHLAKNCRAPRKKGCWKCGKEGHQMKECTERQAN 430
>gi|147822225|emb|CAN63943.1| hypothetical protein VITISV_030434 [Vitis vinifera]
Length = 570
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 56/248 (22%), Positives = 101/248 (40%), Gaps = 47/248 (18%)
Query: 4 IMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHL-----EYEIARYSQGDLSI 58
+ +V S+ + + +A ++WEYLK+ Y D K + E+E+ + + D ++
Sbjct: 73 LFAAVSPSIFIKIMKIDSAAEIWEYLKEEYKGDERIKNMQVMNLIREFEMKKMRESD-AV 131
Query: 59 QNYLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMN- 117
++Y + + ++ A V ++ + E + + L+ L +Y+ S+L N
Sbjct: 132 KDYAAQLLSI-ADKVRLLGKEFSNEKIV-----------QKILVTLPEKYEXTISSLENS 179
Query: 118 RDLSPSLDVCFKELLR-----EEQRL---------ATQTILQQNKMHDNAIAYAAAHGKS 163
+DLS + ELL E++RL A Q +Q+N H N +
Sbjct: 180 KDLST---ISLTELLHSLEAVEQRRLMRQGDTAEGAFQARMQKNAGHKNGKMNNNKPCSN 236
Query: 164 KGRDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN--------CQ 212
++ C CK+ H C CN C K GH+ + C + Q CQ
Sbjct: 237 NQKNGVFPPCPHCKKTNHSPQKCWWRPDVKCNKCGKQGHVERICKNQQQEETSAAVDYCQ 296
Query: 213 ASQAVVAS 220
Q A+
Sbjct: 297 EEQLFAAT 304
>gi|259127091|gb|ACV94417.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R R+++CF+C + H+ NC KK C C K GH +KEC R N
Sbjct: 383 RGQRRIKCFNCGKEGHLAKNCRAPRKKGCWKCGKEGHQMKECTERQAN 430
>gi|288819402|gb|ADC55409.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
+ V+CF+C + HI NC KK C C K GH +K+CP R N
Sbjct: 389 KTVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCPERQAN 433
>gi|259127104|gb|ACV94423.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R R+++CF+C + H+ NC KK C C K GH +KEC R N
Sbjct: 383 RGQRRIKCFNCGKEGHLAKNCRAPRKKGCWKCGKEGHQMKECTERQAN 430
>gi|124389800|gb|ABN11082.1| gag protein [Human immunodeficiency virus 1]
Length = 490
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 162 KSKGRDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
KS R R+++CF+C + H+ NC KK C C K GH +K+C R N
Sbjct: 380 KSNFRGQRRIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDCTERQAN 431
>gi|21432|emb|CAA36614.1| unnamed protein product [Solanum tuberosum]
Length = 334
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 81/174 (46%), Gaps = 10/174 (5%)
Query: 21 TAKDMWEYLKKVYNQ-DNTAKCFHLEYEIARYSQGDLSIQNYLSGIQNLWAKYVDMIYVQ 79
TAKD WE +++ Y+ +N ++ L+ E+ + QG+ + Y + + +LW + +D Y
Sbjct: 14 TAKDAWEAVRESYSDLENASQILELKIELWQAKQGENEVTTYYNEMVSLWQE-LDQCYND 72
Query: 80 VPIESLADVQG--VHEQSKRDQFLMKLRPEYKAARSNLMNRDLSPSLDVCFKELLREEQR 137
S+ V+ E + FL +L E+ RS ++ ++ P L F E+ EE
Sbjct: 73 EWECSMDSVKAKKKEENERVYLFLARLNREFDKVRSRILGKNPLP-LRETFSEIRTEE-- 129
Query: 138 LATQTILQQN---KMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCAK 188
+ +L+ + ++ + A K++ ++ C CK+Y H C K
Sbjct: 130 TGRKVMLKPDLNVELKPVIDSSALVTVKNEEDKKKKPLCDHCKKYWHTRETCWK 183
>gi|259127107|gb|ACV94424.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R R+++CF+C + H+ NC KK C C K GH +KEC R N
Sbjct: 383 RGQRRIKCFNCGKEGHLAKNCRAPRKKGCWKCGKEGHQMKECTERQAN 430
>gi|218188731|gb|EEC71158.1| hypothetical protein OsI_02999 [Oryza sativa Indica Group]
Length = 326
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 18/141 (12%)
Query: 3 WIMGSVDQSLVLNLK---PYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQ 59
WI+ +VD S VL+L +TA+++W ++ ++ + + L E QGD SI
Sbjct: 93 WILNTVDDS-VLDLAITDENQTARELWVAIEGLFRSNRAPRAVFLLEEFHSLKQGDSSID 151
Query: 60 NYLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMK-LRPEYKAARSNLMNR 118
Y +++ +L DV E S+ L++ L P Y A ++ N
Sbjct: 152 EYCQ-------------RLKIKAAALRDVGHTIEDSQLVLSLLRGLNPRYTATADDIANS 198
Query: 119 DLSPSLDVCFKELLREEQRLA 139
+ PS + L +E RLA
Sbjct: 199 TVLPSFSRAREMLSLKELRLA 219
>gi|48716831|dbj|BAD23529.1| hypothetical protein [Oryza sativa Japonica Group]
gi|48717016|dbj|BAD23707.1| hypothetical protein [Oryza sativa Japonica Group]
gi|222641111|gb|EEE69243.1| hypothetical protein OsJ_28490 [Oryza sativa Japonica Group]
Length = 156
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 35/68 (51%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
M I SV SL+++L ++TAK +W LK+ Y QD+ A L + Q +SI
Sbjct: 70 MAAIFNSVKHSLIMSLSKFQTAKAIWGSLKQRYVQDSGALLHTLMQQTHAIEQNGMSIDE 129
Query: 61 YLSGIQNL 68
Y S +L
Sbjct: 130 YYSAFDHL 137
>gi|259127112|gb|ACV94426.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R R+++CF+C + H+ NC KK C C K GH +KEC R N
Sbjct: 383 RGQRRIKCFNCGKEGHLAKNCRAPRKKGCWKCGKEGHQMKECTERQAN 430
>gi|259127098|gb|ACV94420.1| gag protein [Human immunodeficiency virus 1]
gi|259127124|gb|ACV94429.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R R+++CF+C + H+ NC KK C C K GH +KEC R N
Sbjct: 383 RGQRRIKCFNCGKEGHLAKNCRAPRKKGCWKCGKEGHQMKECTERQAN 430
>gi|402694379|gb|AFQ90123.1| gag polyprotein, partial [Equine infectious anemia virus]
Length = 488
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 152 NAIAYAAAHGKSKGRDMRQVQ-CFSCKEYRHIIVNC-AKKFCNYCKKPGHIIKECPTRPQ 209
+ +A G KG ++ Q C++C + H+ C A K C CK+PGH K+C P+
Sbjct: 362 SGLAGPMKGGTFKGGPLKAKQTCYNCGKPGHLSSQCRAPKVCFKCKEPGHFSKQCRNAPK 421
Query: 210 NCQAS 214
N +
Sbjct: 422 NGRTG 426
>gi|326417127|gb|ADZ73405.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
+ R+++CF+C + H+ NC KK C C + GH +K+CP R N
Sbjct: 383 KGQRRIKCFNCGKEGHLARNCRAPRKKGCWKCGQEGHQMKDCPGRQAN 430
>gi|259127110|gb|ACV94425.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R R+++CF+C + H+ NC KK C C K GH +KEC R N
Sbjct: 383 RGQRRIKCFNCGKEGHLAKNCRAPRKKGCWKCGKEGHQMKECTERQAN 430
>gi|259127094|gb|ACV94418.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R R+++CF+C + H+ NC KK C C K GH +KEC R N
Sbjct: 383 RGQRRIKCFNCGKEGHLAKNCRAPRKKGCWKCGKEGHQMKECTERQAN 430
>gi|294861025|gb|ADF45406.1| gag protein [Human immunodeficiency virus 1]
Length = 501
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 162 KSKGRDMRQ-VQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
K RD R+ V+CF+C + HI NC KK C C K GH +KEC R N
Sbjct: 382 KGNFRDQRKIVKCFNCGKTGHIARNCRAPRKKGCWKCGKEGHQMKECTERQAN 434
>gi|213138237|gb|ACJ44784.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Query: 143 ILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGH 199
+L + H G KG R V+CF+C + HI NC KK C C K GH
Sbjct: 358 VLAEAMSHAQGTNIMMQRGNFKG-PKRNVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGH 416
Query: 200 IIKECPTRPQN 210
+KEC R N
Sbjct: 417 QMKECTERQAN 427
>gi|341868845|gb|AEK98540.1| gag protein [Equine infectious anemia virus]
Length = 426
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 64/170 (37%), Gaps = 31/170 (18%)
Query: 54 GDLSIQNYLSGIQNLWAKYVDMIYVQVPIES--------LAD---VQGVHEQSKRDQFLM 102
G QN G + + ++D + Q+ E L D +Q +E+ K +
Sbjct: 270 GKPKAQNIRQGPKEPYPDFIDRLLSQIKSEGHPSEITEFLTDTLTIQNANEECK--NAMR 327
Query: 103 KLRPEYKAARSNLMNRDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGK 162
LRPE RD+ Q ++ + +A G
Sbjct: 328 HLRPEDSLEEKMYACRDIG----------------TVKQKMMLLARALQTGLAGPMKGGV 371
Query: 163 SKGRDMRQVQ-CFSCKEYRHIIVNC-AKKFCNYCKKPGHIIKECPTRPQN 210
KG ++ Q C++C + H+ C A K C CK+PGH K+C P+N
Sbjct: 372 LKGGPLKAKQTCYNCGKPGHLSSQCRAPKLCFKCKEPGHFSKQCKNAPKN 421
>gi|410988851|ref|XP_004000690.1| PREDICTED: cellular nucleic acid-binding protein-like [Felis catus]
Length = 171
Score = 41.2 bits (95), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNCAKKF---CNYCKKPGHIIKECPT 206
+D QV+C+ C E H+ +NC+K C C + GH+ +ECPT
Sbjct: 124 KDCTQVKCYRCGEIGHMAINCSKTSEVNCYRCGESGHLARECPT 167
>gi|299930119|gb|ADJ58267.1| gag protein [Human immunodeficiency virus 1]
Length = 504
Score = 41.2 bits (95), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Query: 161 GKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
G KG+ ++++CF+C + H+ NC KK C C K GH +K+CP R N
Sbjct: 380 GNFKGQ--KRIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDCPERQAN 430
>gi|253987314|gb|ACT52162.1| gag protein [Equine infectious anemia virus]
Length = 489
Score = 41.2 bits (95), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 66/168 (39%), Gaps = 27/168 (16%)
Query: 54 GDLSIQNYLSGIQNLWAKYVDMIYVQVPIES--------LADVQGVHEQSKRDQFLMK-L 104
G QN G + + ++VD + Q+ E L D + ++ + M+ L
Sbjct: 270 GKPKAQNIRQGPKEPYPEFVDRLLSQIKSEGHPSEITKFLTDTLTIQNANEECKTAMRHL 329
Query: 105 RPEYKAARSNLMNRDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSK 164
RPE RD+ Q ++ + + +A G K
Sbjct: 330 RPEDSLEEKLYACRDIG----------------TVKQKMMLLARALQSGLAGPMKGGIYK 373
Query: 165 GRDMRQVQ-CFSCKEYRHIIVNC-AKKFCNYCKKPGHIIKECPTRPQN 210
G ++ Q C++C + H+ C A K C CK+PGH+ ++C P+N
Sbjct: 374 GGPLKTPQTCYNCGKPGHLSSQCRAPKVCFKCKQPGHMSRQCKNAPKN 421
>gi|4996365|dbj|BAA78425.1| polyprotein [Arabidopsis thaliana]
gi|338746551|dbj|BAK41505.1| polyprotein [Arabidopsis thaliana]
gi|338746553|dbj|BAK41506.1| polyprotein [Arabidopsis thaliana]
gi|338746557|dbj|BAK41508.1| polyprotein [Arabidopsis thaliana]
gi|338746559|dbj|BAK41509.1| polyprotein [Arabidopsis thaliana]
Length = 1447
Score = 41.2 bits (95), Expect = 0.27, Method: Composition-based stats.
Identities = 29/135 (21%), Positives = 60/135 (44%), Gaps = 12/135 (8%)
Query: 4 IMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLS 63
++G++ S+ + TA +WE L+K+Y + ++ ++++G +I +Y+
Sbjct: 69 VLGAISMSVQPAVSRATTAAQIWETLRKIYANPSYGHVTQFRTQLKQWTKGTKTIDDYMQ 128
Query: 64 GIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRDLSPS 123
G + + D + + L EQ +R L L EYK + +D P+
Sbjct: 129 G----FVTHFDQLAL------LGKPMDHDEQVER--VLENLPEEYKPVIDQIAAKDTPPT 176
Query: 124 LDVCFKELLREEQRL 138
L + LL +E ++
Sbjct: 177 LTEIHERLLNQESKI 191
>gi|225056164|gb|ACN80887.1| gag protein [Human immunodeficiency virus 1]
Length = 503
Score = 41.2 bits (95), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + HI NC KK C C+K GH +KEC R N
Sbjct: 387 RMVKCFNCGKEGHIAKNCRAPRKKGCWKCEKEGHQMKECTERQAN 431
>gi|343168838|gb|AEL96786.1| gag protein [Human immunodeficiency virus 1]
Length = 504
Score = 41.2 bits (95), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
+ V+CF+C HI NC KK C C K GH +K+CP R N
Sbjct: 392 KTVKCFNCGREGHIARNCRAPRKKGCWKCGKEGHQMKDCPERQAN 436
>gi|338746555|dbj|BAK41507.1| polyprotein [Arabidopsis thaliana]
Length = 1447
Score = 41.2 bits (95), Expect = 0.28, Method: Composition-based stats.
Identities = 29/135 (21%), Positives = 60/135 (44%), Gaps = 12/135 (8%)
Query: 4 IMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLS 63
++G++ S+ + TA +WE L+K+Y + ++ ++++G +I +Y+
Sbjct: 69 VLGAISMSVQPAVSRATTAAQIWETLRKIYANPSYGHVTQFRTQLKQWTKGTKTIDDYMQ 128
Query: 64 GIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRDLSPS 123
G + + D + + L EQ +R L L EYK + +D P+
Sbjct: 129 G----FVTHFDQLAL------LGKPMDHDEQVER--VLENLPEEYKPVIDQIAAKDTPPT 176
Query: 124 LDVCFKELLREEQRL 138
L + LL +E ++
Sbjct: 177 LTEIHERLLNQESKI 191
>gi|429249270|gb|AFZ77679.1| gag protein [Human immunodeficiency virus 1]
Length = 495
Score = 41.2 bits (95), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C HI NC KK C C K GH +K+CP R N
Sbjct: 383 RIVKCFNCGRDGHIARNCRAPRKKGCWKCGKEGHQMKDCPERQAN 427
>gi|259126517|gb|ACV94229.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 41.2 bits (95), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
Query: 152 NAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKEC 204
NA A G +G+ R+++CF+C + H+ NC KK C C K GH +KEC
Sbjct: 372 NAAAVMMQRGNFRGQ--RRIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKEC 425
>gi|166026208|gb|ABY78414.1| gag protein [Human immunodeficiency virus 1]
Length = 500
Score = 41.2 bits (95), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + HI NC KK C C K GH +KEC R N
Sbjct: 388 RPVKCFNCGKEGHIAXNCRAPRKKGCWKCGKEGHQMKECTERQAN 432
>gi|55560885|gb|AAV53307.1| gag protein [Human immunodeficiency virus 1]
Length = 499
Score = 41.2 bits (95), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 162 KSKGRDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
K R R+++CF+C E H+ NC K+ C C K GH +K+C R N
Sbjct: 380 KGNFRSQRKIKCFNCGEEGHLAKNCRAPRKRGCWKCGKEGHQMKDCTERQAN 431
>gi|320128476|gb|ADW19542.1| gag protein [Human immunodeficiency virus 1]
Length = 490
Score = 41.2 bits (95), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C HI NC KK C C K GH +K+CP R N
Sbjct: 378 RIVKCFNCGRDGHIARNCRAPRKKGCWKCGKEGHQMKDCPERQAN 422
>gi|151413484|gb|ABS11203.1| gag protein [Human immunodeficiency virus 1]
Length = 503
Score = 41.2 bits (95), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 162 KSKGRDMRQ-VQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
+ GR+ R+ V+CF+C + HI NC KK C C K GH +K+C R N
Sbjct: 380 RGNGRNQRKTVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKDCTERQAN 432
>gi|259128074|gb|ACV94796.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 162 KSKGRDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
K R + ++CF+C + RH+ NC KK C C K GH +K+C R N
Sbjct: 379 KGNFRGQKTIKCFNCGKVRHLAKNCRAPRKKGCWKCGKEGHQMKDCDGRQAN 430
>gi|166025718|gb|ABY78169.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
+ V+CF+C + HI NC KK C C K GH +K+CP R N
Sbjct: 388 KAVKCFNCGKDGHIARNCRAPRKKGCWKCGKEGHQMKDCPERQAN 432
>gi|147802663|emb|CAN77523.1| hypothetical protein VITISV_005923 [Vitis vinifera]
Length = 268
Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 42/211 (19%), Positives = 95/211 (45%), Gaps = 31/211 (14%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
M W+ S+ + T KD+W+ +++ Y++ A +Q ++
Sbjct: 9 MAWLWNSITPEISDTCMFLATTKDIWDAIQQTYSKARDA------------TQLSKTVTE 56
Query: 61 YLSGIQNLWAK--YVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNR 118
Y + ++ LW + + +I + P +++ ++ EQ + FL+ L PE+ R ++ +
Sbjct: 57 YANQLEALWQELDHYRVIKTKCPEDAIV-LKDFIEQDRVYDFLVGLNPEFDQVRIQILGK 115
Query: 119 -DLSPSLDVCFKE---LLR-EEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQC 173
++S CF E L+R EE R++ +L+ + + + + + + D+ +
Sbjct: 116 QEVS-----CFNEVVALIRGEEGRMS--VMLEPQTLDGSTLVAKTEYSEQEKNDLPK-HL 167
Query: 174 FSCKEYRHIIVNCAKKFCNYCKKPGHIIKEC 204
+++ N +C +CKKP H ++C
Sbjct: 168 GRDNQWKE---NKDNLWCTFCKKPRHTKEKC 195
>gi|255739113|gb|ACU31494.1| gag protein [Human immunodeficiency virus 1]
Length = 492
Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 143 ILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGH 199
+L + N+ A G KG R V+CF+C + HI NC KK C C K GH
Sbjct: 359 VLAEAMSQANSTAIMMQRGNFKG-SKRIVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGH 417
Query: 200 IIKECPTRPQN 210
+K+C R N
Sbjct: 418 QMKDCTERQAN 428
>gi|328834534|gb|AEB52933.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 162 KSKGRDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
KS R R+++CF+C + H+ NC KK C C K GH +K+C R N
Sbjct: 379 KSNFRGPRRIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDCTERQAN 430
>gi|281204089|gb|EFA78285.1| hypothetical protein PPL_08936 [Polysphondylium pallidum PN500]
Length = 428
Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
Query: 172 QCFSCKEYRHIIVNCAKK-----FCNYCKKPGHIIKECPTR 207
+CF C + HI C KK C YC KPGH + +CP +
Sbjct: 15 KCFICNKTDHISTRCPKKKGDGSNCFYCNKPGHTVMKCPEK 55
>gi|225056152|gb|ACN80882.1| gag protein [Human immunodeficiency virus 1]
Length = 503
Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + HI NC KK C C K GH +KEC R N
Sbjct: 387 RTVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKECTERQAN 431
>gi|197690516|emb|CAP69998.1| gag polyprotein [Human immunodeficiency virus 1]
Length = 500
Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
+ V+CF+C HI NC KK C C K GH +K+CP R N
Sbjct: 389 KPVKCFNCGREGHIAKNCRAPRKKGCWKCGKEGHQMKDCPERQAN 433
>gi|166025510|gb|ABY78065.1| gag protein [Human immunodeficiency virus 1]
Length = 499
Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
+ V+CF+C + HI NC KK C C K GH +K+CP R N
Sbjct: 387 KTVKCFNCGKDGHIARNCRAPRKKGCWKCGKEGHQMKDCPERQAN 431
>gi|78172851|gb|ABB29382.1| gag protein [Human immunodeficiency virus 1]
Length = 491
Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 162 KSKGRDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
KS R R+++CF+C + H+ NC KK C C K GH +K+C R N
Sbjct: 372 KSNFRGPRRIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDCTERQAN 423
>gi|55560855|gb|AAV53292.1| gag protein [Human immunodeficiency virus 1]
Length = 499
Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 162 KSKGRDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
K R R+++CF+C E H+ NC K+ C C K GH +K+C R N
Sbjct: 380 KGNFRGQRKIKCFNCGEEGHLAKNCRAPRKRGCWKCGKEGHQMKDCTERQAN 431
>gi|328833993|gb|AEB52452.1| gag protein [Human immunodeficiency virus 1]
Length = 500
Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + HI NC KK C C K GH +KEC R N
Sbjct: 388 RTVKCFNCGKEGHIARNCKAPRKKGCWKCGKEGHQMKECTERQAN 432
>gi|147765471|emb|CAN71511.1| hypothetical protein VITISV_008233 [Vitis vinifera]
Length = 208
Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 3/106 (2%)
Query: 34 NQDNTAKCFHLEYEIARYSQGDLSIQNYLSGIQNLWAKYVDMI--YVQVPIESLADVQGV 91
N N ++ F L ++ QG+ +I Y + ++ +W +D+ Y +E +
Sbjct: 4 NLGNQSQIFELTLKLDEIQQGEDNITKYFNSLKRIWQD-LDLFNTYEWKFVEDGCHHKKT 62
Query: 92 HEQSKRDQFLMKLRPEYKAARSNLMNRDLSPSLDVCFKELLREEQR 137
E ++ +FL+ L E+ R ++ R PS+ F E+ REE R
Sbjct: 63 MEDNRIFKFLVGLNVEFDEVRGRIIGRQPMPSIREVFSEVRREESR 108
>gi|255986634|gb|ACU50700.1| gag protein [Human immunodeficiency virus 1]
Length = 500
Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Query: 166 RDMRQ-VQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R+ R+ V+CF+C + HI NC KK C C K GH++KEC R N
Sbjct: 384 RNQRKIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHLMKECTERQAN 432
>gi|255739545|gb|ACU31710.1| gag protein [Human immunodeficiency virus 1]
Length = 494
Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
RQV+CF+C + HI NC KK C C K GH +K+C R N
Sbjct: 386 RQVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQAN 430
>gi|255739543|gb|ACU31709.1| gag protein [Human immunodeficiency virus 1]
Length = 494
Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
RQV+CF+C + HI NC KK C C K GH +K+C R N
Sbjct: 386 RQVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQAN 430
>gi|21671075|dbj|BAC02547.1| gag-pol polyprotein [Human immunodeficiency virus 1]
Length = 876
Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + HI NC KK C C K GH++K+C R N
Sbjct: 389 RTVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHLMKDCTERQAN 433
>gi|407738202|gb|AFU31184.1| gag protein [Human immunodeficiency virus 1]
Length = 495
Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Query: 161 GKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
G KG+ ++++CF+C + H+ NC KK C C K GH +K+CP R N
Sbjct: 380 GNFKGQ--KRIKCFNCGKEGHLAKNCRAPRKKGCWKCGKEGHQMKDCPERQAN 430
>gi|358395603|gb|EHK44990.1| hypothetical protein TRIATDRAFT_166172, partial [Trichoderma
atroviride IMI 206040]
Length = 404
Score = 41.2 bits (95), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 172 QCFSCKEYRHIIVNCAK---KFCNYCKKPGHIIKECPTRP 208
+CF C E H C + C YCKK GH++K+CP +P
Sbjct: 45 KCFGCGEEGHRRAECPNAEAQTCRYCKKEGHMVKDCPDKP 84
>gi|325635398|gb|ADZ33264.1| gag protein [Human immunodeficiency virus 1]
Length = 501
Score = 41.2 bits (95), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + HI NC KK C C + GH +K CP R N
Sbjct: 386 RTVKCFNCGKEGHIAKNCRAPRKKGCWKCGEEGHQMKNCPGRQAN 430
>gi|325635350|gb|ADZ33222.1| gag protein [Human immunodeficiency virus 1]
gi|325635358|gb|ADZ33229.1| gag protein [Human immunodeficiency virus 1]
gi|325635366|gb|ADZ33236.1| gag protein [Human immunodeficiency virus 1]
gi|325635374|gb|ADZ33243.1| gag protein [Human immunodeficiency virus 1]
gi|325635382|gb|ADZ33250.1| gag protein [Human immunodeficiency virus 1]
gi|325635390|gb|ADZ33257.1| gag protein [Human immunodeficiency virus 1]
gi|325635406|gb|ADZ33271.1| gag protein [Human immunodeficiency virus 1]
gi|325635414|gb|ADZ33278.1| gag protein [Human immunodeficiency virus 1]
Length = 501
Score = 41.2 bits (95), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + HI NC KK C C + GH +K CP R N
Sbjct: 386 RTVKCFNCGKEGHIAKNCRAPRKKGCWKCGEEGHQMKNCPGRQAN 430
>gi|225056148|gb|ACN80880.1| gag protein [Human immunodeficiency virus 1]
Length = 503
Score = 41.2 bits (95), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + HI NC KK C C K GH +KEC R N
Sbjct: 387 RTVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKECTERQAN 431
>gi|325635342|gb|ADZ33215.1| gag protein [Human immunodeficiency virus 1]
Length = 501
Score = 41.2 bits (95), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + HI NC KK C C + GH +K CP R N
Sbjct: 386 RTVKCFNCGKEGHIAKNCRAPRKKGCWKCGEEGHQMKNCPGRQAN 430
>gi|7594608|emb|CAB53042.2| GAG protein [Human immunodeficiency virus 1]
Length = 499
Score = 41.2 bits (95), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 151 DNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTR 207
+A A KS + R+++CF+C + H+ NC KK C C K GH +K+C R
Sbjct: 371 SGTVAAAIMMQKSNFKGPRKIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDCTER 430
Query: 208 PQN 210
N
Sbjct: 431 QAN 433
>gi|407734435|gb|AFU28020.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 41.2 bits (95), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Query: 161 GKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
G KG+ ++++CF+C + H+ NC KK C C K GH +K+CP R N
Sbjct: 380 GNFKGQ--KRIKCFNCGKEGHLARNCRAPRKKGCWKCGKDGHQMKDCPERQAN 430
>gi|147853054|emb|CAN82769.1| hypothetical protein VITISV_037882 [Vitis vinifera]
Length = 2220
Score = 41.2 bits (95), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 45/223 (20%), Positives = 92/223 (41%), Gaps = 32/223 (14%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
++W+ S+ +++ + + ++ W L+K ++ + A+ L E+ +G LS+ +
Sbjct: 938 LSWLYSSLTPAIMAQIIGHNSSHSAWNALEKTFSSSSRARIMQLRLELQSTKKGSLSMID 997
Query: 61 YLSGIQNLWAKYVDMIYVQVPIESLADV-QGVHEQSKRDQFLMKLRPEYKAARSNLMNRD 119
Y+ + V+ +SLA + + V EQ + L L +Y A + + RD
Sbjct: 998 YI-------------MKVKGAADSLAAIGEPVSEQDQVMNLLGGLGSDYNAVVTAINIRD 1044
Query: 120 LSPSLDVCFKELLREEQRLATQTILQQ-NKMHDNAIAYAAAHGKSKGRDMRQVQCFS--- 175
S++ LL E RL Q+ ++Q + + N + + G + + + Q +
Sbjct: 1045 DKISIEAVHSMLLAFEHRLEQQSSIKQFSPISANYASSSNNRGGGRRYNGGRGQNHTPNI 1104
Query: 176 --------------CKEYRHIIVNCAKKFCNYCKKPGHIIKEC 204
+ RH + K C C K GH ++ C
Sbjct: 1105 SNYTYRGCGRGGRYGQNGRHNSNSSEKPQCQLCGKFGHTVQIC 1147
>gi|242030838|gb|ACS77419.1| gag protein [Human immunodeficiency virus 1]
Length = 459
Score = 41.2 bits (95), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 143 ILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGH 199
+L + N+ A G KG R V+CF+C + HI NC KK C C K GH
Sbjct: 342 VLAEAMSQANSAAVLMQRGNFKG-PKRTVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGH 400
Query: 200 IIKECPTRPQN 210
+K+C R N
Sbjct: 401 QMKDCTERQAN 411
>gi|213138301|gb|ACJ44814.1| gag protein [Human immunodeficiency virus 1]
Length = 490
Score = 41.2 bits (95), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + RHI NC KK C C K GH +K+C R N
Sbjct: 383 RIVKCFNCGKGRHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQAN 427
>gi|255986516|gb|ACU50641.1| gag protein [Human immunodeficiency virus 1]
Length = 501
Score = 41.2 bits (95), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 165 GRDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
G R V+CF+C + HI NC KK C C K GH +K+C R N
Sbjct: 385 GNQRRTVKCFNCGKVGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQAN 433
>gi|225056160|gb|ACN80885.1| gag protein [Human immunodeficiency virus 1]
Length = 503
Score = 41.2 bits (95), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + HI NC KK C C K GH +KEC R N
Sbjct: 387 RTVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKECTERQAN 431
>gi|55139337|gb|AAV41352.1| gag protein [Human immunodeficiency virus 1]
Length = 492
Score = 41.2 bits (95), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + RHI NC KK C C K GH +K+C R N
Sbjct: 384 RIVKCFNCGKGRHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQAN 428
>gi|270381459|emb|CBI68307.1| gag polyprotein [HIV-1 M:B 2007_HIV_010]
gi|270381463|emb|CBI68310.1| gag polyprotein [HIV-1 M:B 2007_HIV_010]
gi|270381472|emb|CBI68315.1| gag polyprotein [HIV-1 M:B 2007_HIV_010]
gi|270381481|emb|CBI68320.1| gag polyprotein [HIV-1 M:B 2007_HIV_010]
gi|270381486|emb|CBI68323.1| gag polyprotein [HIV-1 M:B 2007_HIV_010]
gi|270381490|emb|CBI68325.1| gag polyprotein [HIV-1 M:B 2007_HIV_010]
gi|270381494|emb|CBI68327.1| gag polyprotein [HIV-1 M:B 2007_HIV_010]
gi|270381498|emb|CBI68330.1| gag polyprotein [HIV-1 M:B 2007_HIV_010]
gi|270381500|emb|CBI68331.1| gag polyprotein [HIV-1 M:B 2007_HIV_010]
gi|270381504|emb|CBI68333.1| gag polyprotein [HIV-1 M:B 2007_HIV_010]
gi|270381506|emb|CBI68334.1| gag polyprotein [HIV-1 M:B 2007_HIV_010]
gi|270381509|emb|CBI68336.1| gag polyprotein [HIV-1 M:B 2007_HIV_010]
gi|270381511|emb|CBI68337.1| gag polyprotein [HIV-1 M:B 2007_HIV_010]
gi|270381513|emb|CBI68338.1| gag polyprotein [HIV-1 M:B 2007_HIV_010]
Length = 499
Score = 41.2 bits (95), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
+ V+CF+C + H+ NC KK C C K GH +K+CP R N
Sbjct: 390 KTVKCFNCGKEGHVARNCRAPRKKGCWKCGKEGHQMKDCPERQAN 434
>gi|6815728|gb|AAF28678.1|AF184546_1 gag protein [Human immunodeficiency virus 1]
Length = 261
Score = 41.2 bits (95), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 143 ILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGH 199
+L + N++ G KG R V+CF+C + HI NC KK C C K GH
Sbjct: 189 VLAEAMSQANSVNIMMQRGNFKGSK-RNVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGH 247
Query: 200 IIKECPTRPQN 210
+K+C R N
Sbjct: 248 QMKDCTERQAN 258
>gi|227438217|gb|ACP30598.1| disease resistance protein [Brassica rapa subsp. pekinensis]
Length = 2301
Score = 41.2 bits (95), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 35/168 (20%), Positives = 74/168 (44%), Gaps = 22/168 (13%)
Query: 2 TWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNY 61
+W++GS + + ++ + ++W L +N+ +A+ F L+ ++ ++ D S+ +Y
Sbjct: 89 SWLLGSFSEDVQSSVIHCTNSYEIWMTLASHFNRPTSARLFELQRKLQTTAKQDKSMDDY 148
Query: 62 LSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNL---MNR 118
L I+ + + + Q V E+ K L+ L EY+ ++++ M+
Sbjct: 149 LRDIKTICDQLTSI------------GQPVDERMKIFAALLGLGKEYEPIKTSIEGSMDT 196
Query: 119 DLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGR 166
PS + L+ E RL + T D A++ A +GR
Sbjct: 197 QYHPSFEDVVPRLVAFEDRLKSYTT-------DTAVSPHLAFNTVRGR 237
>gi|225056162|gb|ACN80886.1| gag protein [Human immunodeficiency virus 1]
Length = 503
Score = 41.2 bits (95), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + HI NC KK C C K GH +KEC R N
Sbjct: 387 RTVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHRMKECTERQAN 431
>gi|195954482|gb|ACG58934.1| gag protein [Human immunodeficiency virus 1]
Length = 503
Score = 41.2 bits (95), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 166 RDMRQ-VQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R+ RQ V+CF+C + HI NC KK C C K GH +KEC R N
Sbjct: 384 RNQRQNVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKECTERQAN 432
>gi|110750438|gb|ABG90413.1| gag protein [Human immunodeficiency virus 1]
Length = 492
Score = 41.2 bits (95), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + HI NC KK C C + GH +K+CP R N
Sbjct: 384 RIVKCFNCGKDGHIAKNCRAPRKKGCWRCGREGHQMKDCPERQAN 428
>gi|213138275|gb|ACJ44802.1| gag protein [Human immunodeficiency virus 1]
Length = 492
Score = 41.2 bits (95), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + RHI NC KK C C K GH +K+C R N
Sbjct: 384 RIVKCFNCGKGRHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQAN 428
>gi|117643971|gb|ABK51662.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 41.2 bits (95), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 143 ILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGH 199
IL + A G KG R ++CF+C + HI NC KK C C + GH
Sbjct: 360 ILAEAMSQATKTAVMMQRGNFKGTK-RIIKCFNCGKEGHIARNCRAPRKKGCWKCGREGH 418
Query: 200 IIKECPTRPQN 210
+K+CP R N
Sbjct: 419 QMKDCPERQAN 429
>gi|164606200|gb|ABY62249.1| gag protein [Human immunodeficiency virus 1]
Length = 492
Score = 41.2 bits (95), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 143 ILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGH 199
+L + N++ G KG R V+CF+C + HI NC KK C C K GH
Sbjct: 359 VLAEAMSQTNSVKIMMQRGNFKG-SKRIVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGH 417
Query: 200 IIKECPTRPQN 210
+K+C R N
Sbjct: 418 QMKDCAERQAN 428
>gi|404364137|gb|AFR66846.1| gag protein [Human immunodeficiency virus 1]
Length = 500
Score = 40.8 bits (94), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + HI NC KK C C K GH +KEC R N
Sbjct: 388 RTVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKECTERQAN 432
>gi|147843692|emb|CAN79868.1| hypothetical protein VITISV_011481 [Vitis vinifera]
Length = 154
Score = 40.8 bits (94), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
++W+ +D+SL ++ +TAKDMWE LK+ Y N + L EI Q +++
Sbjct: 86 ISWMFNVIDKSLHSSVAYAQTAKDMWEDLKERYAVGNAPRVHQLRSEIVNLKQEGMTVAA 145
Query: 61 Y 61
Y
Sbjct: 146 Y 146
>gi|160337083|gb|ABX25829.1| gag protein [Feline immunodeficiency virus]
Length = 502
Score = 40.8 bits (94), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 65/152 (42%), Gaps = 20/152 (13%)
Query: 64 GIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRDLSPS 123
G + +++++D +Y Q+ E + V K+ L PE K A S+L + SP
Sbjct: 307 GPKEDYSQFIDRLYAQIDQEQ--NSPEVKLYLKQSLSLANANPECKRAMSHL--KPESP- 361
Query: 124 LDVCFKELLREEQRLATQT--------ILQQNKMHDNAIAYAAAHGKSKG--RDMRQVQC 173
+E LR Q + T LQ N + A G +G R + +C
Sbjct: 362 ----LEEKLRACQEIGTTPYKMNMLAQALQNNGCNQVMQANVRPKGSQQGNRRPGQSFKC 417
Query: 174 FSCKEYRHIIVNC-AKKFCNYCKKPGHIIKEC 204
F+C + H+ C A + CN C K GHI +C
Sbjct: 418 FNCGKPGHLSRQCRAPRKCNTCGKAGHISTDC 449
>gi|255986906|gb|ACU50835.1| gag protein [Human immunodeficiency virus 1]
Length = 502
Score = 40.8 bits (94), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 164 KGRDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
+G + V+CF+C + HI NC KK C C K GH +K+C R N
Sbjct: 383 RGNQRKXVKCFNCGKAGHIAXNCRAPRKKGCWKCGKEGHQMKDCTERQAN 432
>gi|255739511|gb|ACU31693.1| gag protein [Human immunodeficiency virus 1]
Length = 491
Score = 40.8 bits (94), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 162 KSKGRDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
KS R R+++CF+C + H+ NC KK C C K GH +K+C R N
Sbjct: 376 KSNFRGPRRIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDCTERQAN 427
>gi|164606196|gb|ABY62247.1| gag protein [Human immunodeficiency virus 1]
Length = 492
Score = 40.8 bits (94), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 143 ILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGH 199
+L + N++ G KG R V+CF+C + HI NC KK C C K GH
Sbjct: 359 VLAEAMSQTNSVKIMMQRGNFKG-SRRIVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGH 417
Query: 200 IIKECPTRPQN 210
+K+C R N
Sbjct: 418 QMKDCTERQAN 428
>gi|386307125|gb|AFJ05542.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 492
Score = 40.8 bits (94), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + HI NC KK C C K GH +KEC R N
Sbjct: 384 RTVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKECTERQAN 428
>gi|373842332|gb|AEY77155.1| gag protein [Human immunodeficiency virus]
Length = 501
Score = 40.8 bits (94), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
+ V+CF+C + H+ NC KK C C K GH +K+CP R N
Sbjct: 389 KTVKCFNCGKEGHLARNCKAPRKKGCWKCGKEGHQMKDCPERQAN 433
>gi|325634573|gb|ADZ32556.1| gag protein [Human immunodeficiency virus 1]
Length = 501
Score = 40.8 bits (94), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + HI NC KK C C K GH +KEC R N
Sbjct: 389 RTVKCFNCGKEGHIARNCRAPRKKGCWRCGKEGHQMKECTERQAN 433
>gi|299929817|gb|ADJ58116.1| gag protein [Human immunodeficiency virus 1]
Length = 502
Score = 40.8 bits (94), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Query: 161 GKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
G KG+ ++++CF+C + H+ NC KK C C K GH +K+CP R N
Sbjct: 380 GNFKGQ--KRIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDCPERQAN 430
>gi|147820959|emb|CAN63507.1| hypothetical protein VITISV_029435 [Vitis vinifera]
Length = 1211
Score = 40.8 bits (94), Expect = 0.36, Method: Composition-based stats.
Identities = 44/180 (24%), Positives = 73/180 (40%), Gaps = 32/180 (17%)
Query: 30 KKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLSGIQNLWAKYVDMIYVQVPIESLADVQ 89
K +Y D + + + I SQ DL + Y+ I +L +++ ++ P+ Q
Sbjct: 155 KGLYTND-IQRLYKVXSAIVHISQQDLDLSTYIGQIASLKEEFLTVM----PLTPDVGAQ 209
Query: 90 GVHEQSKRDQFLM-----KLRPEYKAARSNLMNRDLSPSLDVCFKELLREEQRLATQTIL 144
Q++ D+F M LRP+ + R ++ PSLD F LLR +TQT L
Sbjct: 210 ----QTQLDKFFMVLTLIGLRPDLEPVRDQILGSSSVPSLDDVFARLLRIS---STQT-L 261
Query: 145 QQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCAKKFCNYCKKPGHIIKEC 204
+ + D+++ +H S+G + C YC K GH C
Sbjct: 262 PSDSISDSSVL--VSHTTSRGGRSGNRG------------RGQRPHCTYCNKLGHTRDRC 307
>gi|386307157|gb|AFJ05558.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 492
Score = 40.8 bits (94), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + HI NC KK C C K GH +KEC R N
Sbjct: 384 RTVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKECTERQAN 428
>gi|225056156|gb|ACN80883.1| gag protein [Human immunodeficiency virus 1]
Length = 503
Score = 40.8 bits (94), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + HI NC KK C C K GH +KEC R N
Sbjct: 387 RMVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKECTERQAN 431
>gi|325636087|gb|ADZ33858.1| gag protein [Human immunodeficiency virus 1]
Length = 501
Score = 40.8 bits (94), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + HI NC KK C C K GH +KEC R N
Sbjct: 389 RTVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKECTERQAN 433
>gi|299930035|gb|ADJ58225.1| gag protein [Human immunodeficiency virus 1]
Length = 501
Score = 40.8 bits (94), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 143 ILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGH 199
+L + H A G KG+ R+++CF+C H+ NC KK C C K GH
Sbjct: 362 VLAEAMSHAQQAAIMMQRGNFKGQ--RKIKCFNCGREGHLARNCRAPRKKGCWKCGKEGH 419
Query: 200 IIKEC 204
+KEC
Sbjct: 420 QMKEC 424
>gi|213138150|gb|ACJ44746.1| gag protein [Human immunodeficiency virus 1]
Length = 493
Score = 40.8 bits (94), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + HI NC KK C C K GH +KEC R N
Sbjct: 385 RTVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKECTERQAN 429
>gi|164606194|gb|ABY62246.1| gag protein [Human immunodeficiency virus 1]
Length = 492
Score = 40.8 bits (94), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 143 ILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGH 199
+L + N++ G KG R V+CF+C + HI NC KK C C K GH
Sbjct: 359 VLAEAMSQTNSVKIMMQRGNFKG-SRRIVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGH 417
Query: 200 IIKECPTRPQN 210
+K+C R N
Sbjct: 418 QMKDCTERQAN 428
>gi|147834993|emb|CAN76913.1| hypothetical protein VITISV_037050 [Vitis vinifera]
Length = 992
Score = 40.8 bits (94), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQG-DLSIQ 59
++WI ++D + L ++ AK +WE+LK+ Y N + L+ IA+ Q +S+
Sbjct: 71 VSWITNTIDPEVKSTLSKFRDAKRLWEHLKQRYAMVNGPRIQQLKTSIAKCEQSKSMSVT 130
Query: 60 NYLSGIQNLWAK 71
Y + LW +
Sbjct: 131 TYYGKLNVLWGE 142
>gi|386307155|gb|AFJ05557.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 492
Score = 40.8 bits (94), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + HI NC KK C C K GH +KEC R N
Sbjct: 384 RTVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKECTERQAN 428
>gi|386307121|gb|AFJ05540.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 492
Score = 40.8 bits (94), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + HI NC KK C C K GH +KEC R N
Sbjct: 384 RTVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKECTERQAN 428
>gi|321478594|gb|EFX89551.1| hypothetical protein DAPPUDRAFT_95131 [Daphnia pulex]
Length = 626
Score = 40.8 bits (94), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 26/38 (68%), Gaps = 2/38 (5%)
Query: 164 KGRDMRQVQCFSCKEYRHIIVNCA-KKFCNYCKKPGHI 200
+GR MR +C+ C + HI +C ++ C+YCK+PGH+
Sbjct: 365 RGRQMRD-ECYKCYQQGHIARDCPNERVCSYCKEPGHV 401
>gi|299929981|gb|ADJ58198.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 40.8 bits (94), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 143 ILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGH 199
+L + H A G KG+ R ++CF+C + H+ NC KK C C K GH
Sbjct: 362 VLAEAMSHAQQTAIMMQRGNFKGQ--RSIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGH 419
Query: 200 IIKECPTRPQN 210
+K+C R N
Sbjct: 420 QMKDCTERQAN 430
>gi|213495585|gb|ACJ49052.1| gag protein [Human immunodeficiency virus 1]
Length = 499
Score = 40.8 bits (94), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
+ V+CF+C + HI NC KK C C+K GH IKEC R N
Sbjct: 387 KPVKCFNCGKEGHIARNCRAPRKKGCWKCEKEGHQIKECTERQAN 431
>gi|110750394|gb|ABG90391.1| gag protein [Human immunodeficiency virus 1]
Length = 494
Score = 40.8 bits (94), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 161 GKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
G SKG R V+CF+C + HI NC KK C C K GH +K+C R N
Sbjct: 378 GNSKG-PRRIVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKDCTERQAN 429
>gi|386307145|gb|AFJ05552.1| gag protein, partial [Human immunodeficiency virus 1]
gi|386307153|gb|AFJ05556.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 492
Score = 40.8 bits (94), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + HI NC KK C C K GH +KEC R N
Sbjct: 384 RTVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKECTERQAN 428
>gi|164606198|gb|ABY62248.1| gag protein [Human immunodeficiency virus 1]
Length = 492
Score = 40.8 bits (94), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 143 ILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGH 199
+L + N++ G KG R V+CF+C + HI NC KK C C K GH
Sbjct: 359 VLAEAMSQTNSVKIMMQRGNFKG-SKRIVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGH 417
Query: 200 IIKECPTRPQN 210
+K+C R N
Sbjct: 418 QMKDCTERQAN 428
>gi|386307137|gb|AFJ05548.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 492
Score = 40.8 bits (94), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + HI NC KK C C K GH +KEC R N
Sbjct: 384 RTVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKECTERQAN 428
>gi|386307123|gb|AFJ05541.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 492
Score = 40.8 bits (94), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + HI NC KK C C K GH +KEC R N
Sbjct: 384 RTVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKECTERQAN 428
>gi|325634565|gb|ADZ32549.1| gag protein [Human immunodeficiency virus 1]
Length = 501
Score = 40.8 bits (94), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + HI NC KK C C K GH +KEC R N
Sbjct: 389 RTVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKECTERQAN 433
>gi|6815586|gb|AAF28536.1|AF184404_1 gag protein [Human immunodeficiency virus 1]
Length = 238
Score = 40.8 bits (94), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R R V+CF+C + HI NC KK C C K GH +K+C R N
Sbjct: 188 RGQRTVKCFNCGKEGHIARNCKAPRKKGCWKCGKEGHQMKDCTERQAN 235
>gi|386307151|gb|AFJ05555.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 492
Score = 40.8 bits (94), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + HI NC KK C C K GH +KEC R N
Sbjct: 384 RTVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKECTERQAN 428
>gi|386307147|gb|AFJ05553.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 492
Score = 40.8 bits (94), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + HI NC KK C C K GH +KEC R N
Sbjct: 384 RTVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKECTERQAN 428
>gi|326417011|gb|ADZ73350.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 40.8 bits (94), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Query: 161 GKSKGRDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
GK KG+ R+++CF+C + H+ NC KK C C K GH +K+C R N
Sbjct: 380 GKFKGQ--RRIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDCTERQAN 430
>gi|386307135|gb|AFJ05547.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 492
Score = 40.8 bits (94), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + HI NC KK C C K GH +KEC R N
Sbjct: 384 RTVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKECTERQAN 428
>gi|300720402|gb|ADK33240.1| gag protein [Human immunodeficiency virus 1]
Length = 492
Score = 40.8 bits (94), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + HI NC KK C C K GH +KEC R N
Sbjct: 384 RXVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKECTERQAN 428
>gi|396075560|gb|AFN81274.1| gag protein [Human immunodeficiency virus 1]
Length = 491
Score = 40.8 bits (94), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 162 KSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
+S R+ R ++CF+C + H+ NC KK C C K GH +K+C R N
Sbjct: 375 RSNFRNQRPIKCFNCGKEGHLARNCKAPRKKGCWKCGKEGHQMKDCTERQAN 426
>gi|328834167|gb|AEB52607.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 340
Score = 40.8 bits (94), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R V+CF C + HI NC KK C C K GH +K+CP R N
Sbjct: 226 RIVKCFRCGKEGHIARNCRAPRKKGCWKCGKEGHQMKDCPERQAN 270
>gi|294860995|gb|ADF45391.1| gag protein [Human immunodeficiency virus 1]
Length = 501
Score = 40.8 bits (94), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 162 KSKGRDMRQ-VQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
K GR+ R+ V+CF+C HI NC KK C C + GH +K+C R N
Sbjct: 379 KGNGRNQRKNVKCFNCGREGHIARNCRAPRKKGCWKCGREGHQMKDCTERQAN 431
>gi|297522375|gb|ADI44378.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 40.8 bits (94), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 166 RDMRQ-VQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
RD R+ V+CF+C HI NC KK C C K GH +KEC R N
Sbjct: 383 RDKRKTVKCFNCGREGHIAKNCRAPRKKGCWKCGKEGHQMKECTERQAN 431
>gi|386307141|gb|AFJ05550.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 492
Score = 40.8 bits (94), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + HI NC KK C C K GH +KEC R N
Sbjct: 384 RTVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKECTERQAN 428
>gi|386307131|gb|AFJ05545.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 492
Score = 40.8 bits (94), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + HI NC KK C C K GH +KEC R N
Sbjct: 384 RTVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKECTERQAN 428
>gi|2961349|emb|CAA18107.1| LTR retrotransposon like protein [Arabidopsis thaliana]
gi|7269049|emb|CAB79159.1| LTR retrotransposon like protein [Arabidopsis thaliana]
Length = 1109
Score = 40.8 bits (94), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 15/69 (21%), Positives = 38/69 (55%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQN 60
++W+ ++D L+ N+ A+D+WE ++K ++ N K ++ ++A Q ++++
Sbjct: 88 VSWMKMTIDSELLTNISHRDVARDLWEQIRKRFSVSNGPKNQKMKADLATCKQEGMTVEG 147
Query: 61 YLSGIQNLW 69
Y + +W
Sbjct: 148 YYGKLNKIW 156
>gi|213138226|gb|ACJ44780.1| gag protein [Human immunodeficiency virus 1]
Length = 492
Score = 40.8 bits (94), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 143 ILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGH 199
+L + N I G KG R V+CF+C + HI NC KK C C K GH
Sbjct: 359 VLAEAMSQANNINIMMRRGNFKG-PKRIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGH 417
Query: 200 IIKECPTRPQN 210
+KEC R N
Sbjct: 418 QMKECTERQAN 428
>gi|32766108|gb|AAP69119.1| gag protein [Human immunodeficiency virus 1]
Length = 495
Score = 40.8 bits (94), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + HI NC KK C C K GH +KEC R N
Sbjct: 382 RTVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKECTERQTN 426
>gi|407736961|gb|AFU30148.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 40.8 bits (94), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 143 ILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGH 199
+L + H + G KG+ R+++CF+C H+ NC KK C C K GH
Sbjct: 362 VLAEAMSHAQQASIMMQKGNFKGQ--RKIKCFNCGREGHLARNCRAPRKKGCWKCGKEGH 419
Query: 200 IIKECPTRPQN 210
+KEC R N
Sbjct: 420 QMKECTERQAN 430
>gi|300719931|gb|ADK32926.1| gag protein [Human immunodeficiency virus 1]
Length = 492
Score = 40.8 bits (94), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + HI NC KK C C K GH +KEC R N
Sbjct: 384 RTVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKECTERQAN 428
>gi|282598041|gb|ADA83285.1| gag protein [Human immunodeficiency virus 1]
Length = 490
Score = 40.8 bits (94), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 162 KSKGRDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
+S R R+++CF+C + H+ NC KK C C K GH +K+C R N
Sbjct: 377 RSNFRGQRKIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDCSERQAN 428
>gi|402910570|ref|XP_003917942.1| PREDICTED: zinc finger CCHC domain-containing protein 13-like
[Papio anubis]
Length = 170
Score = 40.8 bits (94), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNCAKKF---CNYCKKPGHIIKECPT 206
+D QV+C+ C E H+ +NC+K C C + GH+ +ECP+
Sbjct: 123 KDCAQVKCYRCGETGHVAINCSKASQVNCYRCGESGHLARECPS 166
>gi|325634557|gb|ADZ32542.1| gag protein [Human immunodeficiency virus 1]
gi|325635939|gb|ADZ33729.1| gag protein [Human immunodeficiency virus 1]
gi|325635994|gb|ADZ33777.1| gag protein [Human immunodeficiency virus 1]
gi|325636024|gb|ADZ33803.1| gag protein [Human immunodeficiency virus 1]
gi|325636063|gb|ADZ33837.1| gag protein [Human immunodeficiency virus 1]
gi|325636079|gb|ADZ33851.1| gag protein [Human immunodeficiency virus 1]
Length = 501
Score = 40.8 bits (94), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + HI NC KK C C K GH +KEC R N
Sbjct: 389 RTVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKECTERQAN 433
>gi|407736956|gb|AFU30144.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 40.8 bits (94), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 143 ILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGH 199
+L + H + G KG+ R+++CF+C H+ NC KK C C K GH
Sbjct: 362 VLAEAMSHAQQASIMMQKGNFKGQ--RKIKCFNCGREGHLARNCRAPRKKGCWKCGKEGH 419
Query: 200 IIKECPTRPQN 210
+KEC R N
Sbjct: 420 QMKECTERQAN 430
>gi|300720435|gb|ADK33262.1| gag protein [Human immunodeficiency virus 1]
Length = 492
Score = 40.8 bits (94), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 143 ILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGH 199
+L + N+I G KG R ++CF+C + H+ NC KK C C K GH
Sbjct: 359 VLAEAMSQTNSINIMMQRGNFKG-SKRTIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGH 417
Query: 200 IIKECPTRPQN 210
+K+C R N
Sbjct: 418 QMKDCTERQAN 428
>gi|255986113|gb|ACU50440.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 40.8 bits (94), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + HI NC KK C C K GH +KEC R N
Sbjct: 388 RTVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKECTERQAN 432
>gi|119710415|gb|ABL96405.1| gag-pol fusion protein [Human immunodeficiency virus 1]
Length = 260
Score = 40.8 bits (94), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
++ R+++CF+C + HI NC KK C C K GH IK+C R N
Sbjct: 49 KNQRKIKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQIKDCTERQAN 96
>gi|32766094|gb|AAP69112.1| gag protein [Human immunodeficiency virus 1]
Length = 495
Score = 40.8 bits (94), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + HI NC KK C C K GH +KEC R N
Sbjct: 382 RTVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKECTERQAN 426
>gi|308445394|gb|ADO32873.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 40.8 bits (94), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 162 KSKGRDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
K R+ R ++CF+C + HI NC KK C C K GH +K+C R N
Sbjct: 380 KGNFRNNRTIKCFNCGKGGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQAN 431
>gi|414152134|gb|AFW99247.1| gag polyprotein, partial [Equine infectious anemia virus]
gi|414152137|gb|AFW99249.1| gag polyprotein, partial [Equine infectious anemia virus]
gi|414152140|gb|AFW99251.1| gag polyprotein, partial [Equine infectious anemia virus]
gi|414152143|gb|AFW99253.1| gag polyprotein, partial [Equine infectious anemia virus]
gi|414152146|gb|AFW99255.1| gag polyprotein, partial [Equine infectious anemia virus]
gi|414152155|gb|AFW99261.1| gag polyprotein, partial [Equine infectious anemia virus]
gi|414152161|gb|AFW99265.1| gag polyprotein, partial [Equine infectious anemia virus]
gi|414152167|gb|AFW99269.1| gag polyprotein, partial [Equine infectious anemia virus]
Length = 201
Score = 40.8 bits (94), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 152 NAIAYAAAHGKSKGRDMRQVQ-CFSCKEYRHIIVNC-AKKFCNYCKKPGHIIKECPTRPQ 209
+ +A + G KG ++ Q C++C + H+ C A K C CK+PGH K+C P+
Sbjct: 75 SGLAGSMKGGICKGGPLKAPQTCYNCGKPGHLSSQCRAPKVCFKCKQPGHFSKQCRNAPK 134
Query: 210 N 210
N
Sbjct: 135 N 135
>gi|71834719|gb|AAZ41811.1| 01P13-1 [Brassica rapa subsp. pekinensis]
Length = 1545
Score = 40.8 bits (94), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 71/173 (41%), Gaps = 8/173 (4%)
Query: 19 YKTAKDMWEYLKKVY-NQDNTAKCFHLEYEIARYSQGDLSIQNYLSGIQNLWAKYVDMIY 77
++T K +W+ L K Y N+ N ++ F L+ I+ Q + ++ LW++ +
Sbjct: 97 FETPKRLWDMLHKRYGNKSNISRVFDLKQTISVLRQDGEDLTKHMGKFGALWSELESLRP 156
Query: 78 VQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRDLSPSLDVCFKELLREEQR 137
ESL + + EQ + LM L Y+ +++ PS++ +L +EE
Sbjct: 157 NTTDEESLIERR---EQDQVFGLLMTLDESYQDVIKHILRSPTLPSMEEVCAQLQKEEGS 213
Query: 138 L----ATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNC 186
L + + +K + AA G + + + C CK H C
Sbjct: 214 LGLFGGKKGMSTAHKAEEAQANIAAYRGDGRKYEKYEGSCEHCKRQGHKKSQC 266
>gi|407736966|gb|AFU30152.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 40.8 bits (94), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 143 ILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGH 199
+L + H + G KG+ R+++CF+C H+ NC KK C C K GH
Sbjct: 362 VLAEAMSHAQQASIMMQKGNFKGQ--RKIKCFNCGREGHLARNCRAPRKKGCWKCGKEGH 419
Query: 200 IIKECPTRPQN 210
+KEC R N
Sbjct: 420 QMKECTERQAN 430
>gi|225056150|gb|ACN80881.1| gag protein [Human immunodeficiency virus 1]
Length = 500
Score = 40.8 bits (94), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + HI NC KK C C K GH +KEC R N
Sbjct: 387 RTVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKECTERQAN 431
>gi|58220970|gb|AAW68151.1| gag protein [Human immunodeficiency virus 1]
Length = 492
Score = 40.8 bits (94), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 143 ILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGH 199
+L + N+I G KG R ++CF+C + H+ NC KK C C K GH
Sbjct: 359 VLAEAMSQTNSINIMMQRGNFKG-SKRTIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGH 417
Query: 200 IIKECPTRPQN 210
+K+C R N
Sbjct: 418 QMKDCTERQAN 428
>gi|259124539|gb|ACV93418.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 40.8 bits (94), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
R ++++CF+C E H+ NC KK C C K GH +K+C R N
Sbjct: 383 RGQKRIKCFNCGEEGHLARNCRAPRKKGCWKCGKEGHQMKDCTERQAN 430
>gi|414152164|gb|AFW99267.1| gag polyprotein, partial [Equine infectious anemia virus]
Length = 201
Score = 40.8 bits (94), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 152 NAIAYAAAHGKSKGRDMRQVQ-CFSCKEYRHIIVNC-AKKFCNYCKKPGHIIKECPTRPQ 209
+ +A + G KG ++ Q C++C + H+ C A K C CK+PGH K+C P+
Sbjct: 75 SGLAGSMKGGICKGGPLKAPQTCYNCGKPGHLSSQCRAPKVCFKCKQPGHFSKQCRNAPK 134
Query: 210 N 210
N
Sbjct: 135 N 135
>gi|16118261|gb|AAL12640.1| gag protein [Human immunodeficiency virus 1]
Length = 490
Score = 40.8 bits (94), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 143 ILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGH 199
+L + H N + G KG+ R ++CF+C + HI NC KK C C + GH
Sbjct: 356 VLAEAMSHINNTSVMMQKGNFKGQK-RTIKCFNCGKEGHIARNCRAPRKKGCWKCGREGH 414
Query: 200 IIKECPTRPQN 210
+K+C R N
Sbjct: 415 QMKDCTERQAN 425
>gi|55139278|gb|AAV41300.1| gag protein [Human immunodeficiency virus 1]
Length = 492
Score = 40.8 bits (94), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + HI NC KK C C K GH +KEC R N
Sbjct: 384 RTVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKECTERQAN 428
>gi|407736971|gb|AFU30156.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 40.8 bits (94), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 143 ILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGH 199
+L + H + G KG+ R+++CF+C H+ NC KK C C K GH
Sbjct: 362 VLAEAMSHAQQASIMMQKGNFKGQ--RKIKCFNCGREGHLARNCRAPRKKGCWKCGKEGH 419
Query: 200 IIKECPTRPQN 210
+KEC R N
Sbjct: 420 QMKECTERQAN 430
>gi|414152149|gb|AFW99257.1| gag polyprotein, partial [Equine infectious anemia virus]
Length = 201
Score = 40.8 bits (94), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 139 ATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQ-CFSCKEYRHIIVNC-AKKFCNYCKK 196
A Q ++ + + +A + G KG ++ Q C++C + H+ C A K C CK+
Sbjct: 62 AKQKMMLLARALQSGLAGSMKGGICKGGPLKAPQTCYNCGKPGHLSSQCRAPKVCFKCKQ 121
Query: 197 PGHIIKECPTRPQN 210
PGH K+C P+N
Sbjct: 122 PGHFSKQCRNAPKN 135
>gi|409684325|gb|AFV34241.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 40.8 bits (94), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
RD ++++CF+C + H+ NC K+ C C K GH +K+C R N
Sbjct: 383 RDQKRIKCFNCGKEGHLARNCRAPRKRGCWKCGKEGHQMKDCTERQAN 430
>gi|451170285|gb|AGF32716.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 40.8 bits (94), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + HI NC KK C C K GH +KEC R N
Sbjct: 387 RPVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKECTERQAN 431
>gi|255986868|gb|ACU50816.1| gag protein [Human immunodeficiency virus 1]
Length = 501
Score = 40.8 bits (94), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 162 KSKGRDMRQ-VQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
+ GR+ R+ V+CF+C HI NC KK C C K GH +K+C R N
Sbjct: 381 RGNGRNQRKTVKCFNCGREGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQAN 433
>gi|209576125|gb|ACI64032.1| gag protein [Human immunodeficiency virus 1]
Length = 106
Score = 40.8 bits (94), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 162 KSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
KS R ++++CF+C + H+ NC KK C C K GH +K+CP R N
Sbjct: 18 KSNFRGPKRIKCFNCGKDGHLARNCRAPRKKGCWKCGKEGHQMKDCPERQAN 69
>gi|147789978|emb|CAN60688.1| hypothetical protein VITISV_017222 [Vitis vinifera]
Length = 538
Score = 40.8 bits (94), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 96/229 (41%), Gaps = 41/229 (17%)
Query: 4 IMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHL-----EYEIARYSQGDLSI 58
+ +V S+ + + +A ++WEYLK+ Y D K + E+E+ + + D ++
Sbjct: 73 LFAAVSPSIFIKIMKIDSAAEIWEYLKEEYKGDERIKNMQVMNLIREFEMKKMRESD-AV 131
Query: 59 QNYLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMN- 117
++Y + + ++ A V ++ + E + + L+ L +Y+A S+L N
Sbjct: 132 KDYAAQLLSI-ADKVRLLGKEFSNEKIV-----------QKILVTLPEKYEATISSLENS 179
Query: 118 RDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQ---CF 174
+DLS + ELL ++ +N H N + KS G + + C
Sbjct: 180 KDLST---ISLTELL--------HSLEAKNAGHKNG---KVNNNKSCGNNQKNGXFPPCP 225
Query: 175 SCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQNCQASQAVVAS 220
CK+ H C CN C K GH +E CQ Q VA+
Sbjct: 226 HCKKTNHSPQKCWWRPDVKCNKCGKQGH--EETSAAVDYCQEEQLFVAT 272
>gi|32766098|gb|AAP69114.1| gag protein [Human immunodeficiency virus 1]
Length = 495
Score = 40.8 bits (94), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + HI NC KK C C K GH +KEC R N
Sbjct: 382 RTVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKECTERQAN 426
>gi|414152158|gb|AFW99263.1| gag polyprotein, partial [Equine infectious anemia virus]
Length = 201
Score = 40.8 bits (94), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 152 NAIAYAAAHGKSKGRDMRQVQ-CFSCKEYRHIIVNC-AKKFCNYCKKPGHIIKECPTRPQ 209
+ +A + G KG ++ Q C++C + H+ C A K C CK+PGH K+C P+
Sbjct: 75 SGLAGSMKGGICKGGPLKAPQTCYNCGKPGHLSSQCRAPKVCFKCKQPGHFSKQCRNAPK 134
Query: 210 N 210
N
Sbjct: 135 N 135
>gi|374430140|gb|AEZ51383.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 500
Score = 40.8 bits (94), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
+ V+CFSC + HI NC KK C C K GH +KEC R N
Sbjct: 384 KTVKCFSCGKEGHIARNCRAPRKKGCWKCGKEGHQMKECTERQAN 428
>gi|451170215|gb|AGF32658.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 40.8 bits (94), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + HI NC KK C C K GH +KEC R N
Sbjct: 387 RPVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKECTERQAN 431
>gi|326654002|gb|AEA02881.1| gag protein [Human immunodeficiency virus 1]
Length = 491
Score = 40.8 bits (94), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 143 ILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGH 199
+L + N A G KG R V+CF+C + HI NC KK C C K GH
Sbjct: 358 VLAEAMSQTNNAAIMMQRGNFKG-PRRIVKCFNCGKEGHIAXNCRAPRKKGCWKCGKEGH 416
Query: 200 IIKECPTRPQN 210
+K+C R N
Sbjct: 417 QMKDCTERQAN 427
>gi|229661973|gb|ACQ84421.1| gag protein [Human immunodeficiency virus 1]
Length = 500
Score = 40.8 bits (94), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + HI NC KK C C K GH +KEC R N
Sbjct: 388 RTVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKECTERQAN 432
>gi|32766090|gb|AAP69110.1| gag protein [Human immunodeficiency virus 1]
Length = 495
Score = 40.8 bits (94), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + HI NC KK C C K GH +KEC R N
Sbjct: 382 RTVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKECTERQAN 426
>gi|255739547|gb|ACU31711.1| gag protein [Human immunodeficiency virus 1]
Length = 492
Score = 40.4 bits (93), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 143 ILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGH 199
+L + N I+ G KG R V+CF+C + HI NC KK C C K GH
Sbjct: 359 VLAEAMSQANNISIMMQKGNFKG-SRRIVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGH 417
Query: 200 IIKECPTRPQN 210
+K+C R N
Sbjct: 418 QMKDCTERQAN 428
>gi|166025796|gb|ABY78208.1| gag protein [Human immunodeficiency virus 1]
Length = 503
Score = 40.4 bits (93), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
++ R V+CF+C + HI NC KK C C K GH +K+C R N
Sbjct: 388 KNQRTVKCFNCGKVGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQAN 435
>gi|86277557|gb|ABC88282.1| gag protein [Human immunodeficiency virus 1]
Length = 502
Score = 40.4 bits (93), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 152 NAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRP 208
A A G KGR R V+CF+C + HI NC KK C C + GH +K+C R
Sbjct: 378 TATAVLMQKGNFKGR--RIVKCFNCGKEGHIAKNCRAPRKKGCWKCGREGHQMKDCTERQ 435
Query: 209 QN 210
N
Sbjct: 436 AN 437
>gi|451170279|gb|AGF32711.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 40.4 bits (93), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + HI NC KK C C K GH +KEC R N
Sbjct: 387 RPVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKECTERQAN 431
>gi|451170267|gb|AGF32701.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 40.4 bits (93), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + HI NC KK C C K GH +KEC R N
Sbjct: 387 RPVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKECTERQAN 431
>gi|407038564|gb|EKE39189.1| zinc knuckle domain containing protein [Entamoeba nuttalli P19]
Length = 400
Score = 40.4 bits (93), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 173 CFSCKEYRHIIVNCAK---KFCNYCKKPGHIIKECPTRPQNCQASQAV 217
CF C + HI +C++ K C YC KPGHI K CP + + QA
Sbjct: 312 CFKCGKPGHIGRDCSQPDDKVCFYCGKPGHIGKNCPEQEVPESSDQAT 359
>gi|300720669|gb|ADK33418.1| gag protein [Human immunodeficiency virus 1]
Length = 495
Score = 40.4 bits (93), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 137 RLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNY 193
R+ + ++Q N + N + G KG R ++CF+C + HI NC KK C
Sbjct: 358 RVLAEAMIQANSANANIMMQ---RGNFKGX-XRIIKCFNCGKEGHIAKNCRAPRKKGCWK 413
Query: 194 CKKPGHIIKECPTRPQN 210
C K GH +K+C R N
Sbjct: 414 CGKEGHQMKDCTERQAN 430
>gi|259125447|gb|ACV93783.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 40.4 bits (93), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R+ ++++CF+C + H+ NC KK C C K GH +K+C R N
Sbjct: 383 RNQKRIKCFNCGKEGHLARNCGAPRKKGCWKCGKEGHQMKDCTERQAN 430
>gi|32766104|gb|AAP69117.1| gag protein [Human immunodeficiency virus 1]
Length = 495
Score = 40.4 bits (93), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + HI NC KK C C K GH +KEC R N
Sbjct: 382 RTVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKECTERQAN 426
>gi|451170203|gb|AGF32648.1| gag protein [Human immunodeficiency virus 1]
gi|451170273|gb|AGF32706.1| gag protein [Human immunodeficiency virus 1]
gi|451170291|gb|AGF32721.1| gag protein [Human immunodeficiency virus 1]
gi|451170320|gb|AGF32745.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 40.4 bits (93), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + HI NC KK C C K GH +KEC R N
Sbjct: 387 RPVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKECTERQAN 431
>gi|451170185|gb|AGF32633.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 40.4 bits (93), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + HI NC KK C C K GH +KEC R N
Sbjct: 387 RPVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKECTERQAN 431
>gi|6815545|gb|AAF28495.1|AF184363_1 gag protein [Human immunodeficiency virus 1]
Length = 254
Score = 40.4 bits (93), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 162 KSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
+S R R ++CF+C + H+ NC KK C C K GH +K+C R N
Sbjct: 200 RSNFRGQRTIKCFNCGKEGHLARNCKAPRKKGCWKCGKEGHQMKDCTERQAN 251
>gi|255986486|gb|ACU50626.1| gag protein [Human immunodeficiency virus 1]
Length = 503
Score = 40.4 bits (93), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 143 ILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGH 199
+L H N+ A G K + + V+CF+C + HI NC KK C C K GH
Sbjct: 363 VLAXAMSHXNSAAVMMQGGNFKNQR-KIVKCFNCGKXXHIAXNCRAPRKKXCWKCGKEGH 421
Query: 200 IIKECPTRPQN 210
+K+C R N
Sbjct: 422 QMKDCSXRQAN 432
>gi|154301789|ref|XP_001551306.1| hypothetical protein BC1G_10046 [Botryotinia fuckeliana B05.10]
Length = 533
Score = 40.4 bits (93), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 24/41 (58%), Gaps = 5/41 (12%)
Query: 170 QVQCFSCKEYRHIIVNCA----KKF-CNYCKKPGHIIKECP 205
QVQCF+C E H + +C KF C CKK GH KECP
Sbjct: 273 QVQCFNCGEIGHRVRDCPIPREDKFACRNCKKSGHSSKECP 313
>gi|117581744|gb|ABK41281.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 40.4 bits (93), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Query: 161 GKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
G KGR R+++CF+C + H+ NC KK C C K GH +K+C R N
Sbjct: 380 GNFKGR--RKIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDCNERQAN 430
>gi|451170232|gb|AGF32672.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 40.4 bits (93), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + HI NC KK C C K GH +KEC R N
Sbjct: 387 RPVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKECTERQAN 431
>gi|32766102|gb|AAP69116.1| gag protein [Human immunodeficiency virus 1]
Length = 495
Score = 40.4 bits (93), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + HI NC KK C C K GH +KEC R N
Sbjct: 382 RTVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKECTERQAN 426
>gi|32766092|gb|AAP69111.1| gag protein [Human immunodeficiency virus 1]
gi|32766106|gb|AAP69118.1| gag protein [Human immunodeficiency virus 1]
Length = 495
Score = 40.4 bits (93), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + HI NC KK C C K GH +KEC R N
Sbjct: 382 RTVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKECTERQAN 426
>gi|32766088|gb|AAP69109.1| gag protein [Human immunodeficiency virus 1]
Length = 490
Score = 40.4 bits (93), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + HI NC KK C C K GH +KEC R N
Sbjct: 382 RTVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKECTERQAN 426
>gi|451170227|gb|AGF32668.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 40.4 bits (93), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + HI NC KK C C K GH +KEC R N
Sbjct: 387 RPVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKECTERQAN 431
>gi|301788510|ref|XP_002929671.1| PREDICTED: cellular nucleic acid-binding protein-like [Ailuropoda
melanoleuca]
Length = 206
Score = 40.4 bits (93), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNCAKKF---CNYCKKPGHIIKECP 205
+D QV+C+ C E H+ +NC+K C C + GH+ +ECP
Sbjct: 159 KDCSQVKCYRCGETGHMAINCSKTSEVNCYRCGESGHLARECP 201
>gi|213138152|gb|ACJ44747.1| gag protein [Human immunodeficiency virus 1]
Length = 492
Score = 40.4 bits (93), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 143 ILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGH 199
+L + N+I G KG R ++CF+C + H+ NC KK C C K GH
Sbjct: 359 VLAEAMSQTNSINIMMQRGNFKG-SKRTIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGH 417
Query: 200 IIKECPTRPQN 210
+K+C R N
Sbjct: 418 QMKDCTERQAN 428
>gi|160337089|gb|ABX25834.1| gag protein [Feline immunodeficiency virus]
Length = 498
Score = 40.4 bits (93), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 65/152 (42%), Gaps = 20/152 (13%)
Query: 64 GIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRDLSPS 123
G + ++ ++D +Y Q I+ + V K+ + PE K A S+L + SP
Sbjct: 303 GPKEDYSNFIDRLYAQ--IDQEQNSPEVKLYLKQSLSIANANPECKRAMSHL--KPESP- 357
Query: 124 LDVCFKELLREEQRLATQT--------ILQQNKMHDNAIAYAAAHGKSKG--RDMRQVQC 173
+E LR Q + T LQ N + A G +G R + ++C
Sbjct: 358 ----LEEKLRACQEIGTTPYKMNMLAQALQSNGCNQVMQANTRPRGPQQGNRRPNQSLKC 413
Query: 174 FSCKEYRHIIVNC-AKKFCNYCKKPGHIIKEC 204
F+C + H+ C A + CN C K GHI +C
Sbjct: 414 FNCGKPGHLSRQCRAPRKCNNCGKTGHISTDC 445
>gi|19912265|dbj|BAB88554.1| gag polyprotein [Human immunodeficiency virus 1]
Length = 503
Score = 40.4 bits (93), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 162 KSKGRDMRQ-VQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
K R+ R+ V+CF+C + RHI NC KK C C K GH +K+C R N
Sbjct: 384 KGNFRNQRKAVKCFNCGKERHIARNCRAPRKKGCWKCGKEGHQMKDCTERQAN 436
>gi|410585676|gb|AFV74119.1| gag protein [Human immunodeficiency virus]
Length = 497
Score = 40.4 bits (93), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 40/78 (51%), Gaps = 7/78 (8%)
Query: 137 RLATQTILQQNK-MHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCN 192
R+ + + Q NK + +NAI G KG R V+CF+C + HI NC KK C
Sbjct: 358 RVLAEAMSQTNKDLVNNAIMMQ--RGNFKG-PKRIVKCFNCGKEGHIARNCRAPRKKGCW 414
Query: 193 YCKKPGHIIKECPTRPQN 210
C K GH +K+C R N
Sbjct: 415 KCGKEGHQMKDCTERQAN 432
>gi|242030874|gb|ACS77436.1| gag protein [Human immunodeficiency virus 1]
gi|242030876|gb|ACS77437.1| gag protein [Human immunodeficiency virus 1]
Length = 459
Score = 40.4 bits (93), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 143 ILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGH 199
+L + N+ A G KG R V+CF+C + HI NC KK C C K GH
Sbjct: 342 VLAEAMSQANSTAVLMQRGNFKG-PKRIVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGH 400
Query: 200 IIKECPTRPQN 210
+K+C R N
Sbjct: 401 QMKDCTERQAN 411
>gi|358389553|gb|EHK27145.1| hypothetical protein TRIVIDRAFT_188061 [Trichoderma virens Gv29-8]
Length = 458
Score = 40.4 bits (93), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 11/61 (18%)
Query: 151 DNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCAK---KFCNYCKKPGHIIKECPTR 207
DN + A+ K CF C E H C K + C+YCKK GH+ K+CP
Sbjct: 55 DNEAGASGAYANEK--------CFGCGEEGHRRAECPKAGEQTCHYCKKEGHMRKDCPEA 106
Query: 208 P 208
P
Sbjct: 107 P 107
>gi|259128114|gb|ACV94816.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 40.4 bits (93), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
R ++++CF+C E H+ NC KK C C K GH +K+C R N
Sbjct: 383 RGQKRIKCFNCGEEGHLARNCRAPRKKGCWKCGKEGHQMKDCTERQAN 430
>gi|255985993|gb|ACU50380.1| gag protein [Human immunodeficiency virus 1]
Length = 500
Score = 40.4 bits (93), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R ++CF+C + HI NC KK C C K GH +KEC R N
Sbjct: 388 RNIKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKECTERQAN 432
>gi|334884494|gb|AEH21358.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 495
Score = 40.4 bits (93), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 162 KSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
+S + R+++CF+C + H+ NC KK C C K GH +KEC R N
Sbjct: 379 RSNFKGQRKIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKECTERQAN 430
>gi|259126529|gb|ACV94235.1| gag protein [Human immunodeficiency virus 1]
gi|259126562|gb|ACV94250.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 40.4 bits (93), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Query: 152 NAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRP 208
N A G KG+ ++++CF+C + H+ NC KK C C K GH +KEC R
Sbjct: 372 NTAAIMMQRGNFKGQ--KRIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKECTERQ 429
Query: 209 QN 210
N
Sbjct: 430 AN 431
>gi|326654080|gb|AEA02933.1| gag protein [Human immunodeficiency virus 1]
Length = 491
Score = 40.4 bits (93), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 143 ILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGH 199
+L + N+ A G KG R V+CF+C + HI NC KK C C K GH
Sbjct: 358 VLAEAMSQANSAAVLMQRGNFKG-PKRIVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGH 416
Query: 200 IIKECPTRPQN 210
+K+C R N
Sbjct: 417 QMKDCTERQAN 427
>gi|259128483|gb|ACV94960.1| gag protein [Human immunodeficiency virus 1]
Length = 494
Score = 40.4 bits (93), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
R R+++CF+C + H+ NC KK C C K GH +K+C R N
Sbjct: 382 RGQRKIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDCTERQAN 429
>gi|388332039|gb|AFK29861.1| gag protein [Human immunodeficiency virus 1]
Length = 499
Score = 40.4 bits (93), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Query: 161 GKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
G KGR R ++CF+C + H+ NC KK C C K GH +K+C R N
Sbjct: 380 GNFKGR--RTIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDCTERQAN 430
>gi|260533724|gb|ACX45124.1| gag protein [Human immunodeficiency virus 1]
Length = 503
Score = 40.4 bits (93), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Query: 161 GKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
G KG+ R+++CF+C + H+ NC KK C C K GH +KEC R N
Sbjct: 385 GNFKGQ--RRIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKECTERQAN 435
>gi|48843849|gb|AAT47108.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1204
Score = 40.4 bits (93), Expect = 0.51, Method: Composition-based stats.
Identities = 40/204 (19%), Positives = 79/204 (38%), Gaps = 3/204 (1%)
Query: 4 IMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLS 63
++ S++ L + +A MW +L Y + A + + QGD ++ + +
Sbjct: 104 LVASMEIHLTGEVVTLTSAHLMWTHLHDRYAPTSDALYLAMVRQEQSLQQGDSTVDEFYT 163
Query: 64 GIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKR-DQFLMKLRPEYKAARSNLMNRDLSP 122
+ ++W + + Q H +R FL +LR EY++ R+ L++R
Sbjct: 164 QLSSIWRQLDSLGPTICHTYPCCQRQRSHMDLRRIYDFLTRLRSEYESTRAQLLSRHPRV 223
Query: 123 SLDVCFKELLREEQRLATQTI--LQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYR 180
++ E+ EE RL I L + + +A +A+ + + +
Sbjct: 224 TIMEALTEIRSEEIRLREAGILPLPSSVLAVRTVASSASSTPAVHSTVSSSSSSARPPTT 283
Query: 181 HIIVNCAKKFCNYCKKPGHIIKEC 204
+ C YC K GH+ C
Sbjct: 284 VVPSTRGHLHCTYCDKDGHVESFC 307
>gi|242030825|gb|ACS77414.1| gag protein [Human immunodeficiency virus 1]
gi|242030842|gb|ACS77421.1| gag protein [Human immunodeficiency virus 1]
gi|242030844|gb|ACS77422.1| gag protein [Human immunodeficiency virus 1]
Length = 459
Score = 40.4 bits (93), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 143 ILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGH 199
+L + N+ A G KG R V+CF+C + HI NC KK C C K GH
Sbjct: 342 VLAEAMSQANSTAVLMQRGNFKG-PKRIVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGH 400
Query: 200 IIKECPTRPQN 210
+K+C R N
Sbjct: 401 QMKDCTERQAN 411
>gi|259128494|gb|ACV94963.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 40.4 bits (93), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
R R+++CF+C + H+ NC KK C C K GH +K+C R N
Sbjct: 384 RGQRKIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDCTERQAN 431
>gi|109131255|ref|XP_001096279.1| PREDICTED: zinc finger CCHC domain-containing protein 13-like
[Macaca mulatta]
gi|355757474|gb|EHH60999.1| Zinc finger CCHC domain-containing protein 13 [Macaca fascicularis]
Length = 170
Score = 40.4 bits (93), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNCAKKF---CNYCKKPGHIIKECPT 206
+D QV+C+ C E H+ +NC+K C C + GH+ +ECP+
Sbjct: 123 KDCAQVKCYRCGETGHVAINCSKASQVNCYRCGESGHLARECPS 166
>gi|82568609|dbj|BAE48554.1| gag polyprotein [Human immunodeficiency virus 1]
Length = 492
Score = 40.4 bits (93), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + HI NC KK C C K GH++K+C R N
Sbjct: 384 RIVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHLLKDCAERHAN 428
>gi|383506241|gb|AFH37779.1| gag protein [Human immunodeficiency virus 1]
Length = 500
Score = 40.4 bits (93), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + HI NC KK C C K GH +KEC R N
Sbjct: 388 RIVKCFNCGKXGHIAKNCRAPRKKGCWKCGKEGHQMKECTERQAN 432
>gi|17352344|gb|AAL01563.1| gag [Human immunodeficiency virus 1]
Length = 492
Score = 40.4 bits (93), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R ++++CF+C + H+ NC K C C K GH +K+CP R N
Sbjct: 381 RGQKRIKCFNCGKEGHLARNCRAPRKXGCWKCGKEGHQMKDCPERQAN 428
>gi|414152170|gb|AFW99271.1| gag polyprotein, partial [Equine infectious anemia virus]
gi|414152176|gb|AFW99275.1| gag polyprotein, partial [Equine infectious anemia virus]
gi|414152179|gb|AFW99277.1| gag polyprotein, partial [Equine infectious anemia virus]
Length = 201
Score = 40.4 bits (93), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 152 NAIAYAAAHGKSKGRDMRQVQ-CFSCKEYRHIIVNC-AKKFCNYCKKPGHIIKECPTRPQ 209
+ +A G KG ++ Q C++C + H+ C A K C CK+PGH K+C P+
Sbjct: 75 SGLAGTMKGGICKGGPLKASQTCYNCGKPGHLSSQCRAPKVCFKCKQPGHFSKQCRNAPK 134
Query: 210 N 210
N
Sbjct: 135 N 135
>gi|386306932|gb|AFJ05446.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 497
Score = 40.4 bits (93), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + HI NC KK C C K GH +KEC R N
Sbjct: 383 RTVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKECTERQAN 427
>gi|301503629|gb|ADK75338.1| gag protein [Human immunodeficiency virus 1]
Length = 508
Score = 40.4 bits (93), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 152 NAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRP 208
N+ A G + + R V+CF+C + HI NC K+ C C K GH +K+C R
Sbjct: 380 NSAAIMMQKGTFRNQKRRTVKCFNCGKEGHIAKNCKAPRKRGCWKCGKEGHQMKDCNERQ 439
Query: 209 QN 210
N
Sbjct: 440 AN 441
>gi|242030802|gb|ACS77405.1| gag protein [Human immunodeficiency virus 1]
Length = 459
Score = 40.4 bits (93), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 143 ILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGH 199
+L + N+ A G KG R V+CF+C + HI NC KK C C K GH
Sbjct: 342 VLAEAMSQANSTAVLMQRGNFKG-PKRIVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGH 400
Query: 200 IIKECPTRPQN 210
+K+C R N
Sbjct: 401 QMKDCTERQAN 411
>gi|255739125|gb|ACU31500.1| gag protein [Human immunodeficiency virus 1]
Length = 491
Score = 40.4 bits (93), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 162 KSKGRDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
KS R+ ++++CF+C + H+ NC KK C C K GH +K+C R N
Sbjct: 376 KSNFRNYKRIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDCTERQAN 427
>gi|386306960|gb|AFJ05460.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 497
Score = 40.4 bits (93), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + HI NC KK C C K GH +KEC R N
Sbjct: 383 RTVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKECTERQAN 427
>gi|386306922|gb|AFJ05441.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 493
Score = 40.4 bits (93), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + HI NC KK C C K GH +KEC R N
Sbjct: 379 RTVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKECTERQAN 423
>gi|414152173|gb|AFW99273.1| gag polyprotein, partial [Equine infectious anemia virus]
Length = 201
Score = 40.4 bits (93), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 152 NAIAYAAAHGKSKGRDMRQVQ-CFSCKEYRHIIVNC-AKKFCNYCKKPGHIIKECPTRPQ 209
+ +A G KG ++ Q C++C + H+ C A K C CK+PGH K+C P+
Sbjct: 75 SGLAGTMKGGICKGGPLKASQTCYNCGKPGHLSSQCRAPKVCFKCKQPGHFSKQCRNAPK 134
Query: 210 N 210
N
Sbjct: 135 N 135
>gi|386306928|gb|AFJ05444.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 497
Score = 40.4 bits (93), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + HI NC KK C C K GH +KEC R N
Sbjct: 383 RTVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKECTERQAN 427
>gi|260533614|gb|ACX45025.1| gag protein [Human immunodeficiency virus 1]
Length = 494
Score = 40.4 bits (93), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 162 KSKGRDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
K R R+++CF+C + H+ NC KK C C K GH +K+C R N
Sbjct: 379 KGNFRGQRRIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDCTERQAN 430
>gi|386306966|gb|AFJ05463.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 497
Score = 40.4 bits (93), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + HI NC KK C C K GH +KEC R N
Sbjct: 383 RTVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKECTERQAN 427
>gi|320410175|gb|ADW26874.1| gag protein [Human immunodeficiency virus 1]
Length = 500
Score = 40.4 bits (93), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + HI NC KK C C K GH +KEC R N
Sbjct: 388 RIVKCFNCGKVGHIAKNCRAPRKKGCWKCGKEGHQMKECTERQAN 432
>gi|242030695|gb|ACS77356.1| gag protein [Human immunodeficiency virus 1]
Length = 452
Score = 40.4 bits (93), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Query: 160 HGKSKGRDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
+GK KGR V+CF+C + HI NC KK C C GH +K+C R N
Sbjct: 359 NGKFKGRKF--VKCFNCGKVGHIARNCRAPRKKGCWKCGSEGHQMKDCTERQAN 410
>gi|209576183|gb|ACI64061.1| gag protein [Human immunodeficiency virus 1]
Length = 107
Score = 40.4 bits (93), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 162 KSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
KS R ++++CF+C + H+ NC KK C C K GH +K+CP R N
Sbjct: 18 KSNFRGPKRIKCFNCGKDGHLARNCRAPRKKGCWKCGKEGHQMKDCPERQAN 69
>gi|86277637|gb|ABC88354.1| gag protein [Human immunodeficiency virus 1]
Length = 495
Score = 40.4 bits (93), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + HI NC KK C C K GH++K+C R N
Sbjct: 386 RIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHLMKDCTERQAN 430
>gi|87131043|gb|ABD24125.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 40.4 bits (93), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 162 KSKGRDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
K R R+++CF+C + H+ NC KK C C K GH +K+C R N
Sbjct: 378 KGNFRGQRRIKCFNCGKEGHLAKNCRAPRKKGCWKCGKEGHQMKDCTERQAN 429
>gi|270014457|gb|EFA10905.1| hypothetical protein TcasGA2_TC001731 [Tribolium castaneum]
Length = 1398
Score = 40.4 bits (93), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 158 AAHGKSKGRDMRQVQCFSCKEYRHIIVNCAKK----FCNYCKKPGHIIKECPTRPQNCQA 213
A+ GK+ + R++ CF C++ H C+ + C C+ GH+ K+C + N +
Sbjct: 225 ASFGKNNAKSSRELICFKCQKPGHTANVCSARNREMRCTLCRSHGHVAKDCRNKTTNKPS 284
Query: 214 SQAVVA 219
Q VA
Sbjct: 285 DQKTVA 290
>gi|259129107|gb|ACV95224.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 40.4 bits (93), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
R ++++CF+C + H++ NC KK C C K GH +K+C R N
Sbjct: 383 RGQKRIKCFNCGKEGHLVRNCRAPRKKGCWKCGKEGHQMKDCTERQAN 430
>gi|164418716|gb|ABY54663.1| gag protein [Human immunodeficiency virus 1]
Length = 492
Score = 40.4 bits (93), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 161 GKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
GK KG R V+CF+C + HI NC KK C C K GH +K+C R N
Sbjct: 373 GKFKG-SKRIVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKDCTERQAN 424
>gi|164418712|gb|ABY54661.1| gag protein [Human immunodeficiency virus 1]
Length = 492
Score = 40.4 bits (93), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 161 GKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
GK KG R V+CF+C + HI NC KK C C K GH +K+C R N
Sbjct: 373 GKFKG-SKRIVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKDCTERQAN 424
>gi|73913975|gb|AAZ91937.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 40.4 bits (93), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Query: 143 ILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGH 199
+L + N G KG R V+CF+C + HI NC KK C C K GH
Sbjct: 363 VLAEAMSQANGTNIMMQRGNFKG-SKRIVRCFNCGKEGHIARNCRAPRKKGCWKCGKEGH 421
Query: 200 IIKECPTRPQN 210
+KEC R N
Sbjct: 422 QMKECTERQAN 432
>gi|358022906|gb|AEU03927.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 40.4 bits (93), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 162 KSKGRDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
KS R R ++CF+C + H+ NC K+ C C K GH +K+C R N
Sbjct: 379 KSNFRGQRTIKCFNCGKEGHLARNCRAPRKRGCWKCGKEGHQMKDCTERQAN 430
>gi|386306964|gb|AFJ05462.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 497
Score = 40.4 bits (93), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + HI NC KK C C K GH +KEC R N
Sbjct: 383 RTVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKECTERQAN 427
>gi|386306944|gb|AFJ05452.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 497
Score = 40.4 bits (93), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + HI NC KK C C K GH +KEC R N
Sbjct: 383 RTVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKECTERQAN 427
>gi|554970|gb|AAA44694.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 487
Score = 40.4 bits (93), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R ++++CF+C + H+ NC KK C C K GH +KEC R N
Sbjct: 383 RGQKRIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKECTERQAN 430
>gi|242030884|gb|ACS77441.1| gag protein [Human immunodeficiency virus 1]
gi|242030888|gb|ACS77443.1| gag protein [Human immunodeficiency virus 1]
Length = 459
Score = 40.4 bits (93), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 143 ILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGH 199
+L + N+ A G KG R V+CF+C + HI NC KK C C K GH
Sbjct: 342 VLAEAMSQANSAAVMMQRGNFKG-PKRIVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGH 400
Query: 200 IIKECPTRPQN 210
+K+C R N
Sbjct: 401 QMKDCTERQAN 411
>gi|386306948|gb|AFJ05454.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 497
Score = 40.4 bits (93), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + HI NC KK C C K GH +KEC R N
Sbjct: 383 RTVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKECTERQAN 427
>gi|386306942|gb|AFJ05451.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 498
Score = 40.4 bits (93), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + HI NC KK C C K GH +KEC R N
Sbjct: 384 RTVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKECTERQAN 428
>gi|55416413|gb|AAV50170.1| gag protein [Human immunodeficiency virus 1]
Length = 479
Score = 40.4 bits (93), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 162 KSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
K R ++++CF+C + H+ NC KK C C K GH +KEC R N
Sbjct: 372 KGNFRGQKRIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKECTERQAN 423
>gi|22596474|gb|AAN03238.1|AF457080_1 gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 40.4 bits (93), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 162 KSKGRDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
K R R+++CF+C + H+ NC KK C C K GH +K+C R N
Sbjct: 377 KGNFRGQRRIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDCTERQAN 428
>gi|388524553|gb|AFK50174.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 146
Score = 40.4 bits (93), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 161 GKSKGRDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTR 207
G KG+ ++++CF+C + H+ NC KK C C + GH +K+C R
Sbjct: 26 GNPKGQGQKRIKCFNCGKEGHLARNCRAPRKKGCWKCGREGHQMKDCTER 75
>gi|386306946|gb|AFJ05453.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 497
Score = 40.4 bits (93), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + HI NC KK C C K GH +KEC R N
Sbjct: 383 RTVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKECTERQAN 427
>gi|386306934|gb|AFJ05447.1| gag protein, partial [Human immunodeficiency virus 1]
gi|386306950|gb|AFJ05455.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 497
Score = 40.4 bits (93), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + HI NC KK C C K GH +KEC R N
Sbjct: 383 RTVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKECTERQAN 427
>gi|261872046|gb|ACY02857.1| gag polyprotein [Equine infectious anemia virus]
Length = 427
Score = 40.4 bits (93), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 66/170 (38%), Gaps = 31/170 (18%)
Query: 54 GDLSIQNYLSGIQNLWAKYVDMIYVQVPIES--------LAD---VQGVHEQSKRDQFLM 102
G QN G + + +++D + Q+ E L D +Q +E+ K +
Sbjct: 271 GKPKAQNIRQGPKEPYPEFIDRLLSQIKSEGHPTEITKFLTDTLTIQNANEECK--NAMR 328
Query: 103 KLRPEYKAARSNLMNRDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGK 162
LRPE RD+ + Q ++ + +A G
Sbjct: 329 HLRPEDTLEEKLYACRDIGTT----------------KQKMMLLARALQTGLAGPMKGGA 372
Query: 163 SKGRDMRQVQ-CFSCKEYRHIIVNC-AKKFCNYCKKPGHIIKECPTRPQN 210
+G ++ Q C++C + H+ C A K C CK+PGH K+C P+N
Sbjct: 373 IRGGPLKAKQTCYNCGKPGHLSSQCKAPKVCFKCKEPGHFSKQCRNAPKN 422
>gi|225581286|gb|ACN94812.1| gag protein [Human immunodeficiency virus 1]
gi|294860927|gb|ADF45357.1| gag protein [Human immunodeficiency virus 1]
Length = 503
Score = 40.4 bits (93), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 162 KSKGRDMRQ-VQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
K RD R+ V+CF+C + HI NC KK C C K GH +K+C R N
Sbjct: 380 KGNFRDQRKTVKCFNCGKVGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQAN 432
>gi|326370901|gb|ADZ56649.1| gag protein [Human immunodeficiency virus 1]
Length = 508
Score = 40.4 bits (93), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 162 KSKGRDMRQ-VQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
K RD R+ V+CF+C + HI NC KK C C K GH +K+C R N
Sbjct: 382 KGNFRDQRKTVKCFNCGKGGHIARNCRAPRKKGCWKCGKEGHQMKDCTERQAN 434
>gi|147820387|emb|CAN70029.1| hypothetical protein VITISV_010388 [Vitis vinifera]
Length = 1222
Score = 40.4 bits (93), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 81/203 (39%), Gaps = 50/203 (24%)
Query: 7 SVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLSGIQ 66
SVD ++L+L+ YKT W K +Y D + + + I SQ DL + Y+ I
Sbjct: 62 SVDPKILLHLQAYKTCFKFWTQAKGLYTND-IQXLYKVAFAIVHISQQDLDLSTYIGQIV 120
Query: 67 NLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQF-----LMKLRPEYKAARSNLMNRDLS 121
+L + + ++ P+ DV +Q++ D+F L+ LRP+ + R
Sbjct: 121 SLKEELLTVM----PLT--PDVGA--QQTQLDKFFXVLTLIXLRPBLEPVR--------- 163
Query: 122 PSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRH 181
+Q L + + L + + D+++ +H S+G C R
Sbjct: 164 -------------DQILGSSSTLXSDXISDSSVL--VSHTTSRG---------GCSGNRG 199
Query: 182 IIVNCAKKFCNYCKKPGHIIKEC 204
+ C YC K GH C
Sbjct: 200 ---RGQRPHCTYCNKLGHTRDRC 219
>gi|315614093|gb|ADU52629.1| gag protein [Human immunodeficiency virus 1]
Length = 188
Score = 40.4 bits (93), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
+ V+CF+C + RHI NC KK C C+K GH +K+C R N
Sbjct: 76 KTVKCFNCGKERHIARNCKAPRKKGCWKCRKEGHQMKDCTERQAN 120
>gi|213137820|gb|ACJ44587.1| gag protein [Human immunodeficiency virus 1]
Length = 500
Score = 40.4 bits (93), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 143 ILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGH 199
+L + N++ G KG R V+CF+C + HI NC KK C C K GH
Sbjct: 359 VLAEAMSQTNSVNIMMQRGNFKG-PKRNVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGH 417
Query: 200 IIKEC 204
+K+C
Sbjct: 418 QMKDC 422
>gi|157274060|gb|ABV28326.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 40.4 bits (93), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + HI NC KK C C K GH +KEC R N
Sbjct: 387 RVVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKECTERQAN 431
>gi|46254414|gb|AAS86172.1| gag protein [Human immunodeficiency virus 1]
Length = 501
Score = 40.4 bits (93), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 162 KSKGRDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
KS+GR V+CF+C + HI NC KK C C K GH +K+C R N
Sbjct: 381 KSQGRT---VKCFNCGKVGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQAN 429
>gi|386306940|gb|AFJ05450.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 497
Score = 40.4 bits (93), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + HI NC KK C C K GH +KEC R N
Sbjct: 383 RTVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKECTERQAN 427
>gi|299482814|gb|ADJ19221.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 40.4 bits (93), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + H+ NC KK C C K GH +KEC R N
Sbjct: 383 RPVKCFNCGKEGHVAKNCRAPRKKGCWKCGKEGHQMKECTERQAN 427
>gi|148469886|gb|ABQ65876.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 40.4 bits (93), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 162 KSKGRDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
KS R ++++CF+C + H+ NC KK C C K GH +K+C R N
Sbjct: 377 KSNFRGTKRIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDCTERQAN 428
>gi|299929821|gb|ADJ58118.1| gag protein [Human immunodeficiency virus 1]
Length = 504
Score = 40.4 bits (93), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
+D ++++CF+C + H+ NC KK C C K GH +K+C R N
Sbjct: 384 KDQKRIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDCTERQAN 431
>gi|242030880|gb|ACS77439.1| gag protein [Human immunodeficiency virus 1]
Length = 459
Score = 40.4 bits (93), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 143 ILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGH 199
+L + N+ A G KG R V+CF+C + HI NC KK C C K GH
Sbjct: 342 VLAEAMSQANSAAVMMQRGNFKG-PKRIVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGH 400
Query: 200 IIKECPTRPQN 210
+K+C R N
Sbjct: 401 QMKDCTERQAN 411
>gi|206570691|gb|ACI12956.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 40.4 bits (93), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
Query: 161 GKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECP 205
G KGR + ++CF+C + H+ NC KK C C K GH +K+CP
Sbjct: 378 GNFKGR--KTIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDCP 423
>gi|166025770|gb|ABY78195.1| gag protein [Human immunodeficiency virus 1]
Length = 511
Score = 40.4 bits (93), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 162 KSKGRDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
K R R V+CF+C + HI NC KK C C K GH +K+C R N
Sbjct: 380 KGNFRPRRSVKCFNCGKDGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQAN 431
>gi|347828477|emb|CCD44174.1| hypothetical protein [Botryotinia fuckeliana]
Length = 503
Score = 40.0 bits (92), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 24/41 (58%), Gaps = 5/41 (12%)
Query: 170 QVQCFSCKEYRHIIVNCA----KKF-CNYCKKPGHIIKECP 205
QVQCF+C E H + +C KF C CKK GH KECP
Sbjct: 314 QVQCFNCSEIGHRVRDCPIPREDKFACRNCKKSGHSSKECP 354
>gi|93210813|gb|ABF00776.1| gag protein [Human immunodeficiency virus 1]
Length = 491
Score = 40.0 bits (92), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 143 ILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGH 199
+L + N I G KG R V+CF+C + HI NC KK C C K GH
Sbjct: 358 VLAEAMSQANNINIMMQRGNFKG-PKRTVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGH 416
Query: 200 IIKECPTRPQN 210
+K+C R N
Sbjct: 417 QMKDCTERQAN 427
>gi|6815543|gb|AAF28493.1|AF184361_1 gag protein [Human immunodeficiency virus 1]
Length = 238
Score = 40.0 bits (92), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 162 KSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
+S R R ++CF+C + H+ NC KK C C K GH +K+C R N
Sbjct: 184 RSNFRGQRTIKCFNCGKEGHLARNCKAPRKKGCWKCGKEGHQMKDCTERQAN 235
>gi|242030882|gb|ACS77440.1| gag protein [Human immunodeficiency virus 1]
Length = 459
Score = 40.0 bits (92), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 143 ILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGH 199
+L + N+ A G KG R V+CF+C + HI NC KK C C K GH
Sbjct: 342 VLAEAMSQANSAAVMMQRGNFKG-PKRIVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGH 400
Query: 200 IIKECPTRPQN 210
+K+C R N
Sbjct: 401 QMKDCTERQAN 411
>gi|255986832|gb|ACU50798.1| gag protein [Human immunodeficiency virus 1]
Length = 499
Score = 40.0 bits (92), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
Query: 150 HDNAIAYAAAHGKSKGRDMRQ-VQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECP 205
H NAI K R+ R+ V+CF+C + HI NC K+ C C K GH +KEC
Sbjct: 372 HSNAIMMQ----KGNFRNQRKNVKCFNCGKEGHIARNCRAPRKRGCWKCGKEGHQMKECT 427
Query: 206 TRPQN 210
R N
Sbjct: 428 ERQAN 432
>gi|386306938|gb|AFJ05449.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 497
Score = 40.0 bits (92), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + HI NC KK C C K GH +KEC R N
Sbjct: 383 RAVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKECTERQAN 427
>gi|259128148|gb|ACV94833.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 40.0 bits (92), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R ++++CF+C + H+ NC KK C C K GH +KEC R N
Sbjct: 383 RGQKRIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKECTERQAN 430
>gi|158967407|gb|ABW86750.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 40.0 bits (92), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
R R+++CF+C + H+ NC KK C C K GH +K+C R N
Sbjct: 383 RSQRKIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDCTERQAN 430
>gi|56608687|gb|AAW02977.1| gag protein [Human immunodeficiency virus 1]
Length = 491
Score = 40.0 bits (92), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 162 KSKGRDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
+S R ++V+CF+C + HI NC KK C C K GH +K+C R N
Sbjct: 376 RSNFRGPKRVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQAN 427
>gi|33088552|gb|AAP93318.1| gag-pol polyprotein [Human immunodeficiency virus 1]
Length = 244
Score = 40.0 bits (92), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 162 KSKGRDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
K R ++++CF+C + HI NC KK C C K GH +K+C R N
Sbjct: 38 KGNFRGQKRIKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQLKDCTERQAN 89
>gi|213138229|gb|ACJ44781.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 40.0 bits (92), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 143 ILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGH 199
+L + N+ G KG R V+CF+C + HI NC KK C C K GH
Sbjct: 359 VLAEAMSQANSTNIMMQRGNFKG-PKRIVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGH 417
Query: 200 IIKECPTRPQN 210
+KEC R N
Sbjct: 418 QMKECTERQAN 428
>gi|166026020|gb|ABY78320.1| gag protein [Human immunodeficiency virus 1]
Length = 499
Score = 40.0 bits (92), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
R+ ++V+CF+C + HI NC KK C C + GH +K+C R N
Sbjct: 384 RNQKKVKCFNCGKEGHIAKNCRAPRKKGCWKCGREGHQMKDCTERQAN 431
>gi|22596554|gb|AAN03310.1|AF457088_1 gag protein [Human immunodeficiency virus 1]
Length = 489
Score = 40.0 bits (92), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
R R+++CF+C + H+ NC KK C C K GH +K+C R N
Sbjct: 379 RGQRRIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDCTERQAN 426
>gi|404364110|gb|AFR66837.1| gag protein [Human immunodeficiency virus 1]
Length = 499
Score = 40.0 bits (92), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 165 GRDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
G R V+CF+C + HI NC KK C C K GH +K+C R N
Sbjct: 384 GNQKRTVKCFNCGKIGHIAKNCRAPRKKGCWKCGKEGHQMKDCIERQAN 432
>gi|300720024|gb|ADK32988.1| gag protein [Human immunodeficiency virus 1]
Length = 491
Score = 40.0 bits (92), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 143 ILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGH 199
+L + N I G KG R V+CF+C + HI NC KK C C K GH
Sbjct: 358 VLAEAMSQANNINIMMQRGNFKG-PKRTVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGH 416
Query: 200 IIKECPTRPQN 210
+K+C R N
Sbjct: 417 QMKDCTERQAN 427
>gi|259128096|gb|ACV94807.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 40.0 bits (92), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R ++++CF+C + H+ NC KK C C K GH +KEC R N
Sbjct: 383 RGQKRIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKECTERQAN 430
>gi|224102263|ref|XP_002312614.1| predicted protein [Populus trichocarpa]
gi|222852434|gb|EEE89981.1| predicted protein [Populus trichocarpa]
Length = 345
Score = 40.0 bits (92), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 58/250 (23%), Positives = 104/250 (41%), Gaps = 53/250 (21%)
Query: 4 IMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFH-----LEYEIARYSQGDLSI 58
+ +V ++ + K+AKD+WEYLK+ Y D + E+E+ R + +I
Sbjct: 89 LFAAVSTTIFTRIMSLKSAKDVWEYLKEEYAGDEKIRGMQSLNLIREFELQRMKDSE-TI 147
Query: 59 QNY---LSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNL 115
+ Y L GI N V++ S D + V ++ L+ + +Y+A+ + L
Sbjct: 148 KEYSDRLLGIAN---------RVKLLGTSFLDSRIV------EKILVTVPEKYEASITTL 192
Query: 116 MN-RDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAI-------------------A 155
N +DLS + ELL Q + +++Q+ + + A+ A
Sbjct: 193 ENTKDLS---SITLTELLNALQAQEQKRLMRQDHVIEGALQAKFPDSERRKFGRKHQVAA 249
Query: 156 YAAAHGKSKGRDMRQ--VQCFSCKEYRHIIVNCAKK---FCNYCKKPGHIIKECPTRPQN 210
+ G KG+ +++ C C + H C K+ C+ C + GH C + Q
Sbjct: 250 KPTSQGHGKGKFIKRNFPPCQHCNKMDHPPFKCWKRPDARCSKCNQLGHEAIICRVKNQK 309
Query: 211 CQASQAVVAS 220
Q A VA+
Sbjct: 310 -QEEDAQVAN 318
>gi|441442552|gb|AGC32166.1| gag protein [Human immunodeficiency virus 1]
Length = 499
Score = 40.0 bits (92), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 162 KSKGRDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
K R R+++CF+C + H+ NC KK C C K GH +K+C R N
Sbjct: 379 KGNFRGQRRIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDCTERQAN 430
>gi|6815643|gb|AAF28593.1|AF184461_1 gag protein [Human immunodeficiency virus 1]
Length = 252
Score = 40.0 bits (92), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
R R+++CF+C + H+ NC KK C C K GH +K+C R N
Sbjct: 202 RGQRRIKCFNCGKEGHLAKNCRAPRKKGCWKCGKEGHQMKDCTERQAN 249
>gi|396075628|gb|AFN81319.1| gag protein [Human immunodeficiency virus 1]
Length = 491
Score = 40.0 bits (92), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 162 KSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
+S R R ++CF+C + H+ NC KK C C K GH +K+C R N
Sbjct: 375 RSNFRGQRTIKCFNCGKEGHLARNCKAPRKKGCWKCGKEGHQMKDCTERQAN 426
>gi|386306674|gb|AFJ05321.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 496
Score = 40.0 bits (92), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + HI NC KK C C K GH +KEC R N
Sbjct: 384 RVVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKECTERQAN 428
>gi|213137724|gb|ACJ44542.1| gag protein [Human immunodeficiency virus 1]
Length = 491
Score = 40.0 bits (92), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
R+V+CF+C + HI NC KK C C K GH +K+C R N
Sbjct: 383 RKVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQAN 427
>gi|25166649|gb|AAN73456.1|AF484479_1 gag-pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 1429
Score = 40.0 bits (92), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Query: 161 GKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
G KG+ ++++CF+C + H+ NC K+ C C K GH +K+CP R N
Sbjct: 378 GNFKGQ--KRIKCFNCGKEGHLARNCRSPRKQGCWKCGKEGHQMKDCPERQAN 428
>gi|2944127|gb|AAC05234.1| gag protein [Human immunodeficiency virus 1]
Length = 505
Score = 40.0 bits (92), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 147 NKMHDNAIAYAAAHGKSKG--RDMRQ-VQCFSCKEYRHIIVNCA---KKFCNYCKKPGHI 200
+++ ++AI +A +G R+ R+ V+CF+C + HI NC KK C C K GH+
Sbjct: 368 SQVTNSAITNSATIMMQRGNFRNQRKIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHL 427
Query: 201 IKECPTRPQN 210
+K+C R N
Sbjct: 428 MKDCTERQAN 437
>gi|83026795|gb|ABB96432.1| gag protein [Human immunodeficiency virus 1]
Length = 501
Score = 40.0 bits (92), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 152 NAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRP 208
N+ G + R V+CF+C + HI NC KK C C K GH +K+C R
Sbjct: 372 NSATIMMQRGNFRNNQRRTVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQ 431
Query: 209 QN 210
N
Sbjct: 432 AN 433
>gi|242030864|gb|ACS77431.1| gag protein [Human immunodeficiency virus 1]
Length = 459
Score = 40.0 bits (92), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 143 ILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGH 199
+L + N+ A G KG R V+CF+C + HI NC KK C C K GH
Sbjct: 342 VLAEAMSQANSAAVLMQRGNFKG-PKRIVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGH 400
Query: 200 IIKECPTRPQN 210
+K+C R N
Sbjct: 401 QMKDCTERQAN 411
>gi|242030862|gb|ACS77430.1| gag protein [Human immunodeficiency virus 1]
Length = 459
Score = 40.0 bits (92), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 143 ILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGH 199
+L + N+ A G KG R V+CF+C + HI NC KK C C K GH
Sbjct: 342 VLAEAMSQANSAAVLMQRGNFKG-PKRIVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGH 400
Query: 200 IIKECPTRPQN 210
+K+C R N
Sbjct: 401 QMKDCTERQAN 411
>gi|110750452|gb|ABG90420.1| gag protein [Human immunodeficiency virus 1]
Length = 500
Score = 40.0 bits (92), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 161 GKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
G KG+ R V+CF+C + HI NC KK C C K GH +K+C R N
Sbjct: 377 GNFKGQK-RMVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKDCTERQAN 428
>gi|294961|gb|AAA74706.1| gag protein [Simian immunodeficiency virus]
Length = 554
Score = 40.0 bits (92), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Query: 160 HGKSKGRDMRQVQCFSCKEYRHIIVNCAKKF---CNYCKKPGHIIKEC--PTRPQNCQAS 214
G SKGR M ++C++C + H+ +C K C C K GH+ + C P R Q +
Sbjct: 403 QGPSKGRSM--IKCYNCGQIGHMQKDCKKPLKAKCFNCGKTGHLARACRQPKRNQGPPVA 460
Query: 215 QA 216
QA
Sbjct: 461 QA 462
>gi|395758818|gb|AFN70480.1| gag protein [Human immunodeficiency virus 1]
gi|441442549|gb|AGC32164.1| gag protein [Human immunodeficiency virus 1]
gi|441442555|gb|AGC32168.1| gag protein [Human immunodeficiency virus 1]
gi|441442561|gb|AGC32172.1| gag protein [Human immunodeficiency virus 1]
gi|441442564|gb|AGC32174.1| gag protein [Human immunodeficiency virus 1]
gi|441442567|gb|AGC32176.1| gag protein [Human immunodeficiency virus 1]
gi|441442570|gb|AGC32178.1| gag protein [Human immunodeficiency virus 1]
gi|441442573|gb|AGC32180.1| gag protein [Human immunodeficiency virus 1]
gi|441442576|gb|AGC32182.1| gag protein [Human immunodeficiency virus 1]
gi|441442579|gb|AGC32184.1| gag protein [Human immunodeficiency virus 1]
gi|441442582|gb|AGC32186.1| gag protein [Human immunodeficiency virus 1]
Length = 499
Score = 40.0 bits (92), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 162 KSKGRDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
K R R+++CF+C + H+ NC KK C C K GH +K+C R N
Sbjct: 379 KGNFRGQRRIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDCTERQAN 430
>gi|242030770|gb|ACS77391.1| gag protein [Human immunodeficiency virus 1]
Length = 459
Score = 40.0 bits (92), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 143 ILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGH 199
+L + N+ A G KG R V+CF+C + HI NC KK C C K GH
Sbjct: 342 VLAEAMSQANSAAVLMQRGNFKG-PKRIVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGH 400
Query: 200 IIKECPTRPQN 210
+K+C R N
Sbjct: 401 QMKDCTERQAN 411
>gi|259128094|gb|ACV94806.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 40.0 bits (92), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R ++++CF+C + H+ NC KK C C K GH +KEC R N
Sbjct: 383 RGQKRIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKECTERQAN 430
>gi|242030868|gb|ACS77433.1| gag protein [Human immunodeficiency virus 1]
Length = 459
Score = 40.0 bits (92), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 143 ILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGH 199
+L + N+ A G KG R V+CF+C + HI NC KK C C K GH
Sbjct: 342 VLAEAMSQANSAAVLMQRGNFKG-PKRIVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGH 400
Query: 200 IIKECPTRPQN 210
+K+C R N
Sbjct: 401 QMKDCTERQAN 411
>gi|259128142|gb|ACV94830.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 40.0 bits (92), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R ++++CF+C + H+ NC KK C C K GH +KEC R N
Sbjct: 383 RGQKRIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKECTERQAN 430
>gi|259127601|gb|ACV94617.1| gag protein [Human immunodeficiency virus 1]
Length = 494
Score = 40.0 bits (92), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R ++++CF+C + H+ NC KK C C K GH +KEC R N
Sbjct: 382 RGQKRIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKECTERQAN 429
>gi|255986338|gb|ACU50552.1| gag protein [Human immunodeficiency virus 1]
Length = 501
Score = 40.0 bits (92), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 152 NAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRP 208
NA A G KG+ + V+CF+C + HI NC KK C C + GH +K C R
Sbjct: 372 NAAAIMMQRGNFKGQ-RKNVKCFNCGKEGHIARNCKAPRKKGCWKCGREGHQMKXCTERQ 430
Query: 209 QN 210
N
Sbjct: 431 AN 432
>gi|238635280|gb|ACR52571.1| gag protein [Human immunodeficiency virus 1]
gi|238635289|gb|ACR52579.1| gag protein [Human immunodeficiency virus 1]
gi|238635297|gb|ACR52586.1| gag protein [Human immunodeficiency virus 1]
gi|238635314|gb|ACR52601.1| gag protein [Human immunodeficiency virus 1]
Length = 507
Score = 40.0 bits (92), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 152 NAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRP 208
N+ A G KG+ + V+CF+C + HI NC KK C C K GH +K+C R
Sbjct: 374 NSTAIMMQRGNYKGQ-RKAVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKDCTERQ 432
Query: 209 QN 210
N
Sbjct: 433 AN 434
>gi|213138348|gb|ACJ44835.1| gag protein [Human immunodeficiency virus 1]
Length = 495
Score = 40.0 bits (92), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 143 ILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGH 199
+L + N I G KG R V+CF+C + HI NC KK C C K GH
Sbjct: 362 VLAEAMSQANNINIMMQRGNFKG-PKRTVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGH 420
Query: 200 IIKECPTRPQN 210
+K+C R N
Sbjct: 421 QMKDCTERQAN 431
>gi|147857959|emb|CAN82518.1| hypothetical protein VITISV_042699 [Vitis vinifera]
Length = 797
Score = 40.0 bits (92), Expect = 0.63, Method: Composition-based stats.
Identities = 40/177 (22%), Positives = 73/177 (41%), Gaps = 19/177 (10%)
Query: 33 YNQDNTAKCFHLEYEIARYSQGDLSIQNYLSGIQNLWAKYVDMIYVQVPIESLADVQGVH 92
Y N + F L + + QG+ ++ Y + ++ +W +D+ E + G+H
Sbjct: 68 YLMGNQSXIFELTLKFGKIRQGEDNVTKYFNSLKRIWQD-LDLFNT---YEWKSAEDGLH 123
Query: 93 EQSKRD-----QFLMKLRPEYKAARSNLMNRDLSPSLDVCFKELLREEQRLATQTILQQN 147
+ + +FL+ L E+ R ++ R PS+ F E+ REE + + ++
Sbjct: 124 HKKTMEDNWIFKFLVGLNVEFDEVRGRIIGRQPLPSIGEVFLEVRREE---SWRNVMLGK 180
Query: 148 KMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCAKKFCNYCKKPGHIIKEC 204
K AI +A G + V F K V +C++C KP H + C
Sbjct: 181 KGPGVAIEGSALVTVGGGHNKAAV--FQRKSDERPWV-----WCDFCNKPCHTRENC 230
>gi|29119691|gb|AAO63149.1| gag protein [Human immunodeficiency virus 1]
Length = 500
Score = 40.0 bits (92), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 166 RDMRQ-VQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
RD R+ V+CF+C + H+ NC KK C C K GH +KEC R N
Sbjct: 384 RDQRKKVKCFNCGKEGHLAKNCRAPRKKGCWKCGKEGHQMKECTERQAN 432
>gi|88853349|emb|CAJ01227.1| gag-pol precursor [Human immunodeficiency virus 1]
Length = 1431
Score = 40.0 bits (92), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 162 KSKGRDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
K R R+++CF+C + H+ NC KK C C K GH +K+C R N
Sbjct: 377 KGNFRGPRKIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDCTERQAN 428
>gi|407739343|gb|AFU32139.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 40.0 bits (92), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 143 ILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGH 199
+L + H + G KG +R+++CF+C H+ NC KK C C K GH
Sbjct: 361 VLAEAMSHAQSANIMMQRGNFKG-GLRKIKCFNCGREGHLARNCRAPRKKGCWKCGKEGH 419
Query: 200 IIKECPTRPQN 210
+K+C R N
Sbjct: 420 QMKDCTERQAN 430
>gi|242030762|gb|ACS77388.1| gag protein [Human immunodeficiency virus 1]
gi|242030764|gb|ACS77389.1| gag protein [Human immunodeficiency virus 1]
gi|242030766|gb|ACS77390.1| gag protein [Human immunodeficiency virus 1]
gi|242030772|gb|ACS77392.1| gag protein [Human immunodeficiency virus 1]
gi|242030776|gb|ACS77394.1| gag protein [Human immunodeficiency virus 1]
gi|242030778|gb|ACS77395.1| gag protein [Human immunodeficiency virus 1]
gi|242030786|gb|ACS77398.1| gag protein [Human immunodeficiency virus 1]
gi|242030788|gb|ACS77399.1| gag protein [Human immunodeficiency virus 1]
gi|242030796|gb|ACS77402.1| gag protein [Human immunodeficiency virus 1]
gi|242030798|gb|ACS77403.1| gag protein [Human immunodeficiency virus 1]
gi|242030804|gb|ACS77406.1| gag protein [Human immunodeficiency virus 1]
gi|242030818|gb|ACS77411.1| gag protein [Human immunodeficiency virus 1]
gi|242030886|gb|ACS77442.1| gag protein [Human immunodeficiency virus 1]
Length = 459
Score = 40.0 bits (92), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 143 ILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGH 199
+L + N+ A G KG R V+CF+C + HI NC KK C C K GH
Sbjct: 342 VLAEAMSQANSAAVLMQRGNFKG-PKRIVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGH 400
Query: 200 IIKECPTRPQN 210
+K+C R N
Sbjct: 401 QMKDCTERQAN 411
>gi|259128130|gb|ACV94824.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 40.0 bits (92), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R ++++CF+C + H+ NC KK C C K GH +KEC R N
Sbjct: 383 RGQKRIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKECTERQAN 430
>gi|259127597|gb|ACV94615.1| gag protein [Human immunodeficiency virus 1]
Length = 494
Score = 40.0 bits (92), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R ++++CF+C + H+ NC KK C C K GH +KEC R N
Sbjct: 382 RGQKRIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKECTERQAN 429
>gi|259127594|gb|ACV94614.1| gag protein [Human immunodeficiency virus 1]
Length = 494
Score = 40.0 bits (92), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R ++++CF+C + H+ NC KK C C K GH +KEC R N
Sbjct: 382 RGQKRIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKECTERQAN 429
>gi|225056239|gb|ACN80923.1| gag protein [Human immunodeficiency virus 1]
Length = 516
Score = 40.0 bits (92), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 162 KSKGRDMRQV-QCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
K R+ R+V +CF+C HI+ NC KK C C K GH IK+C R N
Sbjct: 385 KGNFRNQRKVVKCFNCGREGHIVRNCRAPRKKGCWKCGKEGHQIKDCTERQAN 437
>gi|82568608|dbj|BAE48553.1| gag-pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 873
Score = 40.0 bits (92), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + HI NC KK C C K GH++K+C R N
Sbjct: 384 RIVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHLLKDCAERHAN 428
>gi|22596272|gb|AAN03060.1|AF457056_1 gag protein [Human immunodeficiency virus 1]
Length = 495
Score = 40.0 bits (92), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R ++++CF+C + H+ NC KK C C K GH +KEC R N
Sbjct: 381 RGQKRIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKECTERQAN 428
>gi|31980426|dbj|BAC77746.1| Gag polyprotein [Human immunodeficiency virus 1]
gi|31980436|dbj|BAC77755.1| Gag polyprotein [Human immunodeficiency virus 1]
Length = 498
Score = 40.0 bits (92), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R ++++CF+C + H+ NC KK C C K GH +KEC R N
Sbjct: 383 RGQKRIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKECTERQAN 430
>gi|374350307|gb|AEZ35830.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 492
Score = 40.0 bits (92), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Query: 161 GKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
G KG+ R+++CF+C + H+ NC KK C C K GH +KEC R N
Sbjct: 376 GNFKGQ--RRIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKECTERQAN 426
>gi|260533743|gb|ACX45141.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 40.0 bits (92), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 162 KSKGRDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
+ R R+++CF+C + H+ NC KK C C K GH +K+C R N
Sbjct: 379 RGNNRGPRRIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDCTERQAN 430
>gi|254667104|gb|ACT76492.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 40.0 bits (92), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
+D ++++CF+C + H+ NC KK C C K GH +K+C R N
Sbjct: 383 KDQKRIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDCTERQAN 430
>gi|255986077|gb|ACU50422.1| gag protein [Human immunodeficiency virus 1]
Length = 499
Score = 40.0 bits (92), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
+ V+CF+C + HI NC KK C C K GH +KEC R N
Sbjct: 387 KTVKCFNCGKEGHIAXNCRAPRKKGCWRCGKEGHQMKECTERQAN 431
>gi|213138269|gb|ACJ44799.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 40.0 bits (92), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 162 KSKGRDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
KS R ++++CF+C + H+ NC KK C C K GH +K+C R N
Sbjct: 376 KSNFRGSKRIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDCTERQAN 427
>gi|407739328|gb|AFU32127.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 40.0 bits (92), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 143 ILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGH 199
+L + H + G KG +R+++CF+C H+ NC KK C C K GH
Sbjct: 361 VLAEAMSHAQSANIMMQRGNFKG-GLRKIKCFNCGREGHLARNCRAPRKKGCWKCGKEGH 419
Query: 200 IIKECPTRPQN 210
+K+C R N
Sbjct: 420 QMKDCTERQAN 430
>gi|407739323|gb|AFU32123.1| gag protein [Human immunodeficiency virus 1]
gi|407739333|gb|AFU32131.1| gag protein [Human immunodeficiency virus 1]
gi|407739338|gb|AFU32135.1| gag protein [Human immunodeficiency virus 1]
gi|407739348|gb|AFU32143.1| gag protein [Human immunodeficiency virus 1]
gi|407739358|gb|AFU32151.1| gag protein [Human immunodeficiency virus 1]
gi|407739363|gb|AFU32155.1| gag protein [Human immunodeficiency virus 1]
gi|407739368|gb|AFU32159.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 40.0 bits (92), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 143 ILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGH 199
+L + H + G KG +R+++CF+C H+ NC KK C C K GH
Sbjct: 361 VLAEAMSHAQSANIMMQRGNFKG-GLRKIKCFNCGREGHLARNCRAPRKKGCWKCGKEGH 419
Query: 200 IIKECPTRPQN 210
+K+C R N
Sbjct: 420 QMKDCTERQAN 430
>gi|406856197|gb|AFS64059.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 40.0 bits (92), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + HI NC KK C C K GH +KEC R N
Sbjct: 388 RIVKCFNCGKEGHIAKNCXAPRKKGCWKCGKEGHQMKECTERQAN 432
>gi|339786531|gb|AEK11432.1| gag protein [Human immunodeficiency virus 1]
Length = 500
Score = 40.0 bits (92), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
R V+CFSC + HI NC KK C C K GH +K+C R N
Sbjct: 384 RIVKCFSCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQAN 428
>gi|242030850|gb|ACS77425.1| gag protein [Human immunodeficiency virus 1]
Length = 459
Score = 40.0 bits (92), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 143 ILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGH 199
+L + N A G KG R V+CF+C + HI NC KK C C K GH
Sbjct: 342 VLAEAMSQANGAAVLMQRGNFKG-PKRIVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGH 400
Query: 200 IIKECPTRPQN 210
+K+C R N
Sbjct: 401 QMKDCTERQAN 411
>gi|242030782|gb|ACS77396.1| gag protein [Human immunodeficiency virus 1]
gi|242030800|gb|ACS77404.1| gag protein [Human immunodeficiency virus 1]
gi|242030807|gb|ACS77407.1| gag protein [Human immunodeficiency virus 1]
Length = 459
Score = 40.0 bits (92), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 143 ILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGH 199
+L + N+ A G KG R V+CF+C + HI NC KK C C K GH
Sbjct: 342 VLAEAMSQANSAAVLMQRGNFKG-PKRIVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGH 400
Query: 200 IIKECPTRPQN 210
+K+C R N
Sbjct: 401 QMKDCTERQAN 411
>gi|259127604|gb|ACV94618.1| gag protein [Human immunodeficiency virus 1]
Length = 494
Score = 40.0 bits (92), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R ++++CF+C + H+ NC KK C C K GH +KEC R N
Sbjct: 382 RGQKRIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKECTERQAN 429
>gi|238635305|gb|ACR52593.1| gag protein [Human immunodeficiency virus 1]
Length = 507
Score = 40.0 bits (92), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 152 NAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRP 208
N+ A G KG+ + V+CF+C + HI NC KK C C K GH +K+C R
Sbjct: 374 NSTAIMMQRGNYKGQ-RKAVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKDCTERQ 432
Query: 209 QN 210
N
Sbjct: 433 AN 434
>gi|88853350|emb|CAJ01233.1| gag protein [Human immunodeficiency virus 1]
Length = 493
Score = 40.0 bits (92), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 162 KSKGRDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
K R R+++CF+C + H+ NC KK C C K GH +K+C R N
Sbjct: 377 KGNFRGPRKIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDCTERQAN 428
>gi|407739353|gb|AFU32147.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 40.0 bits (92), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 143 ILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGH 199
+L + H + G KG +R+++CF+C H+ NC KK C C K GH
Sbjct: 361 VLAEAMSHAQSANIMMQRGNFKG-GLRKIKCFNCGREGHLARNCRAPRKKGCWKCGKEGH 419
Query: 200 IIKECPTRPQN 210
+K+C R N
Sbjct: 420 QMKDCTERQAN 430
>gi|242030790|gb|ACS77400.1| gag protein [Human immunodeficiency virus 1]
gi|242030816|gb|ACS77410.1| gag protein [Human immunodeficiency virus 1]
gi|242030820|gb|ACS77412.1| gag protein [Human immunodeficiency virus 1]
gi|242030830|gb|ACS77416.1| gag protein [Human immunodeficiency virus 1]
gi|242030832|gb|ACS77417.1| gag protein [Human immunodeficiency virus 1]
gi|242030836|gb|ACS77418.1| gag protein [Human immunodeficiency virus 1]
gi|242030840|gb|ACS77420.1| gag protein [Human immunodeficiency virus 1]
gi|242030846|gb|ACS77423.1| gag protein [Human immunodeficiency virus 1]
gi|242030852|gb|ACS77426.1| gag protein [Human immunodeficiency virus 1]
gi|242030866|gb|ACS77432.1| gag protein [Human immunodeficiency virus 1]
gi|242030872|gb|ACS77435.1| gag protein [Human immunodeficiency virus 1]
Length = 459
Score = 40.0 bits (92), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 143 ILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGH 199
+L + N+ A G KG R V+CF+C + HI NC KK C C K GH
Sbjct: 342 VLAEAMSQANSAAVLMQRGNFKG-PKRIVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGH 400
Query: 200 IIKECPTRPQN 210
+K+C R N
Sbjct: 401 QMKDCTERQAN 411
>gi|218347061|emb|CAQ60124.1| Gag protein [Simian immunodeficiency virus - olc]
Length = 480
Score = 40.0 bits (92), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Query: 157 AAAHGKSKGRDMRQVQCFSCKEYRHIIVNCAKK--FCNYCKKPGHIIKEC 204
A G +GR ++C++C + H NC++K C C KPGHI K C
Sbjct: 359 APGGGPQQGR----LRCYNCGRFGHTKNNCSQKGPTCYKCGKPGHIAKNC 404
>gi|86753662|gb|ABD15079.1| gag protein [Human immunodeficiency virus 1]
Length = 492
Score = 40.0 bits (92), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
R R V+CF+C + HI NC KK C C K GH +K+C R N
Sbjct: 380 RAKRTVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKDCTERQAN 427
>gi|409684315|gb|AFV34232.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 40.0 bits (92), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
+D ++++CF+C + H+ NC KK C C K GH +K+C R N
Sbjct: 383 KDQKRIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDCTERQAN 430
>gi|242030856|gb|ACS77427.1| gag protein [Human immunodeficiency virus 1]
Length = 459
Score = 40.0 bits (92), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 143 ILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGH 199
+L + N+ A G KG R V+CF+C + HI NC KK C C K GH
Sbjct: 342 VLAEAMSQANSAAVLMQRGNFKG-PKRIVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGH 400
Query: 200 IIKECPTRPQN 210
+K+C R N
Sbjct: 401 QMKDCTERQAN 411
>gi|242030784|gb|ACS77397.1| gag protein [Human immunodeficiency virus 1]
Length = 459
Score = 40.0 bits (92), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 143 ILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGH 199
+L + N+ A G KG R V+CF+C + HI NC KK C C K GH
Sbjct: 342 VLAEAMSQANSAAVLMQRGNFKG-PKRIVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGH 400
Query: 200 IIKECPTRPQN 210
+K+C R N
Sbjct: 401 QMKDCTERQAN 411
>gi|93210823|gb|ABF00785.1| gag protein [Human immunodeficiency virus 1]
Length = 490
Score = 40.0 bits (92), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 143 ILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGH 199
+L + N++ G KG R V+CF+C + HI NC KK C C K GH
Sbjct: 357 VLAEAMSQTNSVNIMMQRGNFKGAK-RIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGH 415
Query: 200 IIKECPTRPQN 210
+K+C R N
Sbjct: 416 QMKDCTERQAN 426
>gi|39777374|gb|AAR30956.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 40.0 bits (92), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R ++++CF+C + H+ NC KK C C K GH +KEC R N
Sbjct: 383 RGQKRIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKECTERQAN 430
>gi|451170583|gb|AGF32977.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 40.0 bits (92), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
+D ++++CF+C + H+ NC KK C C K GH +K+C R N
Sbjct: 383 KDQKRIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDCTERQAN 430
>gi|407733245|gb|AFU27011.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 40.0 bits (92), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Query: 161 GKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
G KG+ R+++CF+C + H+ NC KK C C K GH +K+C R N
Sbjct: 380 GNFKGQ--RRIKCFNCGKEGHLARNCGAPRKKGCWKCGKEGHQMKDCTERQAN 430
>gi|242030822|gb|ACS77413.1| gag protein [Human immunodeficiency virus 1]
gi|242030858|gb|ACS77428.1| gag protein [Human immunodeficiency virus 1]
gi|242030860|gb|ACS77429.1| gag protein [Human immunodeficiency virus 1]
Length = 459
Score = 40.0 bits (92), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 143 ILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGH 199
+L + N+ A G KG R V+CF+C + HI NC KK C C K GH
Sbjct: 342 VLAEAMSQANSAAVLMQRGNFKG-PKRIVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGH 400
Query: 200 IIKECPTRPQN 210
+K+C R N
Sbjct: 401 QMKDCTERQAN 411
>gi|242030814|gb|ACS77409.1| gag protein [Human immunodeficiency virus 1]
Length = 459
Score = 40.0 bits (92), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 143 ILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGH 199
+L + N+ A G KG R V+CF+C + HI NC KK C C K GH
Sbjct: 342 VLAEAMSQANSAAVLMQRGNFKG-PKRIVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGH 400
Query: 200 IIKECPTRPQN 210
+K+C R N
Sbjct: 401 QMKDCTERQAN 411
>gi|259128102|gb|ACV94810.1| gag protein [Human immunodeficiency virus 1]
gi|259128110|gb|ACV94814.1| gag protein [Human immunodeficiency virus 1]
gi|259128136|gb|ACV94827.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 40.0 bits (92), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R ++++CF+C + H+ NC KK C C K GH +KEC R N
Sbjct: 383 RGQKRIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKECTERQAN 430
>gi|259125056|gb|ACV93600.1| gag protein [Human immunodeficiency virus 1]
Length = 494
Score = 40.0 bits (92), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
R ++++CFSC + H+ NC KK C C K GH +K+C R N
Sbjct: 382 RGQKRIKCFSCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDCTERQAN 429
>gi|242030793|gb|ACS77401.1| gag protein [Human immunodeficiency virus 1]
gi|242030811|gb|ACS77408.1| gag protein [Human immunodeficiency virus 1]
Length = 459
Score = 40.0 bits (92), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 143 ILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGH 199
+L + N+ A G KG R V+CF+C + HI NC KK C C K GH
Sbjct: 342 VLAEAMSQANSAAVLMQRGNFKG-PKRIVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGH 400
Query: 200 IIKECPTRPQN 210
+K+C R N
Sbjct: 401 QMKDCTERQAN 411
>gi|259128146|gb|ACV94832.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 40.0 bits (92), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R ++++CF+C + H+ NC KK C C K GH +KEC R N
Sbjct: 383 RGQKRIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKECTERQAN 430
>gi|213137173|gb|ACJ44271.1| gag protein [Human immunodeficiency virus 1]
Length = 483
Score = 40.0 bits (92), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 162 KSKGRDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
+S R ++V+CF+C + HI NC KK C C K GH +K+C R N
Sbjct: 376 RSNFRGPKRVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQAN 427
>gi|166025636|gb|ABY78128.1| gag protein [Human immunodeficiency virus 1]
Length = 500
Score = 40.0 bits (92), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + HI NC KK C C K GH +KEC R N
Sbjct: 388 RVVKCFNCGKVGHIAKNCRAPRKKGCWKCGKEGHQMKECNERQAN 432
>gi|429249250|gb|AFZ77669.1| gag protein [Human immunodeficiency virus 1]
Length = 500
Score = 40.0 bits (92), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 166 RDMRQ-VQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
RD R+ V+CF+C + HI NC KK C C K GH +K+C R N
Sbjct: 384 RDQRKIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQLKDCTERQAN 432
>gi|407738618|gb|AFU31539.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 40.0 bits (92), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Query: 161 GKSKGRDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
G KG+ ++++CF+C RH+ NC KK C C K GH +K+C R N
Sbjct: 380 GNFKGQ--KRIKCFNCGRERHLARNCRAPRKKGCWKCGKEGHQMKDCTERQAN 430
>gi|259129312|gb|ACV95310.1| gag protein [Human immunodeficiency virus 1]
gi|259129344|gb|ACV95321.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 40.0 bits (92), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 162 KSKGRDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
+S R R+++CF+C + H+ NC KK C C + GH +K+C R N
Sbjct: 379 RSNFRGQRRIKCFNCGKEGHLARNCRAPRKKGCWKCGREGHQMKDCTERQAN 430
>gi|259129127|gb|ACV95232.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 40.0 bits (92), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R ++++CF+C + H+ NC KK C C K GH +K+C R N
Sbjct: 383 RGQKRIKCFNCGKEGHLARNCRAPRKKGCRKCGKEGHQMKDCTERQAN 430
>gi|147838429|emb|CAN76591.1| hypothetical protein VITISV_020293 [Vitis vinifera]
Length = 1416
Score = 40.0 bits (92), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 16/70 (22%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQ-DNTAKCFHLEYEIARYSQGDLSIQ 59
MTW++ S+++ + N Y T + +WE + ++Y+ N ++ F L +++ Q + ++
Sbjct: 420 MTWLVNSMEEDISSNYMCYPTTQKLWENVNQMYSDLGNQSQIFELTFKLGEIRQREDNVI 479
Query: 60 NYLSGIQNLW 69
Y + ++ +W
Sbjct: 480 KYFNSLKQIW 489
>gi|147817226|emb|CAN75363.1| hypothetical protein VITISV_026292 [Vitis vinifera]
Length = 1161
Score = 40.0 bits (92), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 50/229 (21%), Positives = 97/229 (42%), Gaps = 26/229 (11%)
Query: 7 SVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLSGIQ 66
++++ ++ +++ KT + W K++++ N + LE E+ Q D +I Y ++
Sbjct: 72 TIEEDVLEHIRDAKTPYEAWNTFTKLFSKKNDTRLQLLESELLSIXQRDXTIAXYFHKVK 131
Query: 67 NLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMNRDLSPSLDV 126
L + + + ++ PI E + + LRPE++ + + PSL V
Sbjct: 132 TL-CREISELDLEAPI---------GETRMKRIIIHGLRPEFRGFVAAIQGWQNQPSL-V 180
Query: 127 CFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQ-----CFSCKEYRH 181
F+ LL ++ LA Q K + A+ SK +R+ + S + R
Sbjct: 181 EFENLLAGQEALAKQMGGVSLKGEEEALYAHKXRWNSKQHTVRRTKKNEDKAKSSQGERS 240
Query: 182 IIVN-------CAKKF---CNYCKKPGHIIKECPTRPQNCQASQAVVAS 220
V KKF C C+K GH+ K+C ++ +++ A S
Sbjct: 241 ARVEGDSKNPXTRKKFEGTCYNCRKKGHMAKDCWSKKGLVESNAATSKS 289
>gi|147790287|emb|CAN74375.1| hypothetical protein VITISV_044324 [Vitis vinifera]
Length = 523
Score = 40.0 bits (92), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 96/229 (41%), Gaps = 39/229 (17%)
Query: 4 IMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHL-----EYEIARYSQGDLSI 58
+ +V S+ + + +A ++WEYLK+ Y D + E+E+ + + D ++
Sbjct: 73 LFAAVSPSIFIKIMKIDSAAEIWEYLKEEYKGDERIXNMXVMNLIREFEMKKMRESD-AV 131
Query: 59 QNYLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMN- 117
++Y + + ++ A V ++ + E + + L+ L +Y+A S+L N
Sbjct: 132 KDYAAQLLSI-ADKVRLLGKEFSNEKIV-----------QKILVTLPEKYEATISSLENS 179
Query: 118 RDLSPSLDVCFKELLR-----EEQRL---------ATQTILQQNKMHDNAIAYAAAHGKS 163
+DLS + ELL E++RL A Q +Q+N H N +
Sbjct: 180 KDLS---TISLTELLHSLEAVEQRRLMRQGDTXEGAFQARMQKNAGHKNGKMNNNKPCSN 236
Query: 164 KGRDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQ 209
++ C CK+ H C CN C K GH+ + C + Q
Sbjct: 237 NQKNGVFPPCPHCKKTNHSPQKCWWRPDVKCNKCGKQGHVERICKNQQQ 285
>gi|396075616|gb|AFN81311.1| gag protein [Human immunodeficiency virus 1]
Length = 491
Score = 40.0 bits (92), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 162 KSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
+S R R ++CF+C + H+ NC KK C C K GH +K+C R N
Sbjct: 376 RSNFRGQRTIKCFNCGKEGHLARNCKAPRKKGCWKCGKEGHQMKDCTERQAN 427
>gi|299929849|gb|ADJ58132.1| gag protein [Human immunodeficiency virus 1]
Length = 502
Score = 40.0 bits (92), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Query: 143 ILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGH 199
+L + H + G KG+ ++++CF+C + H+ NC KK C C K GH
Sbjct: 362 VLAEAMSHVQPVNIMMQRGNFKGQ--KRIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGH 419
Query: 200 IIKECPTRPQN 210
+KEC R N
Sbjct: 420 QMKECTERQAN 430
>gi|226345522|gb|ACO49256.1| gag protein [Human immunodeficiency virus 1]
Length = 132
Score = 40.0 bits (92), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTR 207
R V+CF+C + HI NC KK C C + GH +K+CP R
Sbjct: 23 RSVKCFNCGKEGHIARNCRAPRKKGCWKCGQEGHQMKDCPGR 64
>gi|74315759|gb|ABA02483.1| gag protein [Human immunodeficiency virus 1]
Length = 488
Score = 40.0 bits (92), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R R ++CF+C + H+ NC KK C C K GH +K+C R N
Sbjct: 376 RSQRTIKCFNCGKEGHLARNCKAPRKKGCWKCGKEGHQMKDCTERQAN 423
>gi|391379426|gb|AFM44085.1| gag protein [Human immunodeficiency virus 1]
Length = 506
Score = 40.0 bits (92), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 166 RDMRQ-VQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
RD R+ V+CF+C + HI NC KK C C K GH +K+C R N
Sbjct: 384 RDQRKAVKCFNCGKAGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQAN 432
>gi|334884418|gb|AEH21320.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 497
Score = 40.0 bits (92), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
+D ++++CF+C + H+ NC KK C C K GH +K+C R N
Sbjct: 383 KDQKRIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDCTERQAN 430
>gi|326486508|gb|ADZ76332.1| gag protein, partial [Human immunodeficiency virus 1]
gi|343168848|gb|AEL96795.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 40.0 bits (92), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 11/68 (16%)
Query: 154 IAYAAAHGKSKG--------RDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIK 202
+A A +H +S G + R+++CF+C H+ NC KK C C K GH +K
Sbjct: 363 LAEAMSHMQSAGIMMQKGNFKGQRKIKCFNCGREGHLARNCRAPRKKGCWKCGKEGHQMK 422
Query: 203 ECPTRPQN 210
+C R N
Sbjct: 423 DCTERQAN 430
>gi|315272174|gb|ADU02635.1| gag protein [Equine infectious anemia virus]
Length = 485
Score = 40.0 bits (92), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 65/168 (38%), Gaps = 27/168 (16%)
Query: 54 GDLSIQNYLSGIQNLWAKYVDMIYVQVPIES--------LADVQGVHEQSKRDQFLMK-L 104
G QN G + + ++VD + Q+ E L D + + + M+ L
Sbjct: 272 GKPKAQNIRQGPKEPYPEFVDRLLSQIKSEGHPADITKFLTDTLTIQNANDECKNAMRHL 331
Query: 105 RPEYKAARSNLMNRDLSPSLDVCFKELLREEQRLATQTILQQNKMHDNAIAYAAAHGKSK 164
RPE K RD+ ++++ L + + +A G K
Sbjct: 332 RPEDKLEEKMYACRDIG---------TVKQKMALLAKAL-------QTGLAGPMKGGIFK 375
Query: 165 GRDMRQVQ-CFSCKEYRHIIVNC-AKKFCNYCKKPGHIIKECPTRPQN 210
G + Q C++C + H C A K C CK+PGH K+C P+N
Sbjct: 376 GGPLGAKQTCYNCGKPGHFSSQCKAPKVCFKCKQPGHFSKQCRNAPKN 423
>gi|320410172|gb|ADW26873.1| gag protein [Human immunodeficiency virus 1]
Length = 500
Score = 40.0 bits (92), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + HI NC KK C C K GH +KEC R N
Sbjct: 388 RIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKECTERQAN 432
>gi|300720198|gb|ADK33104.1| gag protein [Human immunodeficiency virus 1]
Length = 492
Score = 40.0 bits (92), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + HI NC KK C C K GH +K+C R N
Sbjct: 384 RNVKCFNCGKEGHIAXNCRAPRKKGCWKCGKEGHQMKDCTERQAN 428
>gi|37934084|gb|AAO43879.1| gag-pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 585
Score = 40.0 bits (92), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + HI NC KK C C K GH +KEC R N
Sbjct: 34 RTVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKECTERQAN 78
>gi|396075637|gb|AFN81325.1| gag protein [Human immunodeficiency virus 1]
Length = 495
Score = 40.0 bits (92), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 162 KSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
KS R R ++CF+C + H+ NC K+ C C K GH +K+C R N
Sbjct: 379 KSNFRGQRTIKCFNCGKEGHLARNCKAPRKRGCWKCGKEGHQMKDCTERQAN 430
>gi|255986326|gb|ACU50546.1| gag protein [Human immunodeficiency virus 1]
Length = 501
Score = 40.0 bits (92), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 147 NKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKE 203
+++ ++A A A + G + ++CF+C + HI NC KK C C K GH +K+
Sbjct: 364 SQVTNSASASIMAQRGNYGNQRKAIKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKD 423
Query: 204 CPTRPQN 210
C R N
Sbjct: 424 CAERQAN 430
>gi|255069231|dbj|BAH89163.1| Gag [Human immunodeficiency virus 1]
gi|255069241|dbj|BAH89172.1| Gag [Human immunodeficiency virus 1]
Length = 492
Score = 40.0 bits (92), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
R R ++CF+C + H+ NC KK C C K GH +K+C R N
Sbjct: 380 RGQRTIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDCTERQAN 427
>gi|323778|gb|AAA43013.1| polyprotein, partial [Equine infectious anemia virus]
Length = 122
Score = 40.0 bits (92), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 148 KMHDNAIAYAAAHGKSKGRDMRQVQ-CFSCKEYRHIIVNC-AKKFCNYCKKPGHIIKECP 205
K +A G KG ++ Q C++C + H+ C A K C CK+PGH K+C
Sbjct: 18 KALQTGLAGPFKGGALKGGPLKAAQTCYNCGKPGHLSSQCRAPKVCFKCKQPGHFSKQCK 77
Query: 206 TRPQN 210
+ P+N
Sbjct: 78 SVPKN 82
>gi|6815604|gb|AAF28554.1|AF184422_1 gag protein [Human immunodeficiency virus 1]
Length = 254
Score = 40.0 bits (92), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
R R+++CF+C + H+ NC KK C C K GH +K+C R N
Sbjct: 204 RGQRKIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDCTERQAN 251
>gi|85700634|gb|ABC74739.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 40.0 bits (92), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 162 KSKGRDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
KS R ++++CF+C + H+ NC KK C C K GH +K+C R N
Sbjct: 376 KSNFRGSKRIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDCTERQAN 427
>gi|300719757|gb|ADK32810.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 40.0 bits (92), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 161 GKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
G KG R V+CF+C + HI NC KK C C K GH +KEC R N
Sbjct: 377 GNFKGXK-RIVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKECTERQAN 428
>gi|289469710|gb|ADC96511.1| gag protein [Human immunodeficiency virus 1]
Length = 141
Score = 40.0 bits (92), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 171 VQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
V+CF+C + HI NC KK C C K GH +K+CP R N
Sbjct: 28 VKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKDCPERQAN 70
>gi|407735739|gb|AFU29112.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 40.0 bits (92), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 162 KSKGRDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
KS + R+++CF+C H+ NC KK C C K GH +K+C R N
Sbjct: 379 KSNFKGQRRIKCFNCGREGHLARNCRAPRKKGCWKCGKEGHQMKDCTERQAN 430
>gi|300720450|gb|ADK33272.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 40.0 bits (92), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Query: 143 ILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGH 199
+L + N+ G KG R V+CF+C + HI NC KK C C K GH
Sbjct: 365 VLAEAMSQSNSTIMMMQRGNFKG-SRRTVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGH 423
Query: 200 IIKECPTRPQN 210
+K C R N
Sbjct: 424 QMKXCTERQAN 434
>gi|259128132|gb|ACV94825.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 40.0 bits (92), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R ++++CF+C + H+ NC KK C C K GH +KEC R N
Sbjct: 383 RGQKRIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKECTERQAN 430
>gi|145229969|ref|XP_001389293.1| zinc knuckle transcription factor (CnjB) [Aspergillus niger CBS
513.88]
gi|134055407|emb|CAK37116.1| unnamed protein product [Aspergillus niger]
Length = 481
Score = 40.0 bits (92), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
Query: 164 KGRDMRQVQCFSCKEYRHIIVNCAKKF------CNYCKKPGHIIKECPT 206
K RD+ V C +C E H +C KK CN C + GH IK CPT
Sbjct: 384 KPRDVSTVTCRNCDEVGHFSRDCPKKRDYSRVKCNNCGEMGHTIKRCPT 432
>gi|77416891|sp|P24740.3|POL_HV1U4 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;
Contains: RecName: Full=Matrix protein p17; Short=MA;
Contains: RecName: Full=Capsid protein p24; Short=CA;
Contains: RecName: Full=Spacer peptide p2; Contains:
RecName: Full=Nucleocapsid protein p7; Short=NC;
Contains: RecName: Full=Transframe peptide; Short=TF;
Contains: RecName: Full=p6-pol; Short=p6*; Contains:
RecName: Full=Protease; AltName: Full=PR; AltName:
Full=Retropepsin; Contains: RecName: Full=Reverse
transcriptase/ribonuclease H; AltName:
Full=Exoribonuclease H; AltName: Full=p66 RT; Contains:
RecName: Full=p51 RT; Contains: RecName: Full=p15;
Contains: RecName: Full=Integrase; Short=IN
Length = 1428
Score = 40.0 bits (92), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
R R+++CF+C + H+ NC KK C C K GH +K+C R N
Sbjct: 379 RGPRRIKCFNCGKEGHLAKNCRAPRKKGCWKCGKEGHQMKDCTERQAN 426
>gi|259127618|gb|ACV94625.1| gag protein [Human immunodeficiency virus 1]
Length = 494
Score = 40.0 bits (92), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R ++++CF+C + H+ NC KK C C K GH +KEC R N
Sbjct: 382 RGQKRIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKECTERQAN 429
>gi|166025504|gb|ABY78062.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 40.0 bits (92), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 165 GRDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
G R V+CF+C + HI NC K+ C C K GH +K+C R N
Sbjct: 384 GNQKRSVKCFNCGKEGHIARNCRAPRKRGCWKCGKEGHQMKDCTERQAN 432
>gi|39777384|gb|AAR30965.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 40.0 bits (92), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R ++++CF+C + H+ NC KK C C K GH +KEC R N
Sbjct: 383 RGQKRIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKECTERQAN 430
>gi|386306662|gb|AFJ05315.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 496
Score = 40.0 bits (92), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + HI NC KK C C K GH +KEC R N
Sbjct: 384 RIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKECTERQAN 428
>gi|358365333|dbj|GAA81955.1| zinc knuckle transcription factor [Aspergillus kawachii IFO 4308]
Length = 489
Score = 40.0 bits (92), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
Query: 164 KGRDMRQVQCFSCKEYRHIIVNCAKKF------CNYCKKPGHIIKECPT 206
K RD+ V C +C E H +C KK CN C + GH IK CPT
Sbjct: 384 KPRDVSTVTCRNCDEVGHFSRDCPKKRDYSRVKCNNCGEMGHTIKRCPT 432
>gi|299930267|gb|ADJ58341.1| gag protein [Human immunodeficiency virus 1]
Length = 503
Score = 40.0 bits (92), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
+D ++++CF+C + H+ NC KK C C K GH +K+C R N
Sbjct: 384 KDQKRIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDCTERQAN 431
>gi|299930197|gb|ADJ58306.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 40.0 bits (92), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
R R ++CF+C + H+ NC KK C C K GH +K+C R N
Sbjct: 383 RGQRSIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDCTERQAN 430
>gi|259126799|gb|ACV94300.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 40.0 bits (92), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R ++++CF+C + H+ NC KK C C K GH +KEC R N
Sbjct: 383 RGQKRIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKECTERQAN 430
>gi|67553091|gb|AAY68678.1| gag protein [Human immunodeficiency virus 1]
Length = 504
Score = 40.0 bits (92), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 143 ILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGH 199
+L + N I G KG R V+CF+C + HI NC KK C C K GH
Sbjct: 359 VLAEAMSQANNINVLMQRGNFKG-PKRMVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGH 417
Query: 200 IIKECPTRPQN 210
+K+C R N
Sbjct: 418 QMKDCTERQAN 428
>gi|62361769|gb|AAX81417.1| gag protein [Human immunodeficiency virus 1]
Length = 494
Score = 40.0 bits (92), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
RQ++CF+C + H+ NC KK C C K GH +K+C R N
Sbjct: 386 RQIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDCTERQAN 430
>gi|55560847|gb|AAV53288.1| gag protein [Human immunodeficiency virus 1]
Length = 499
Score = 40.0 bits (92), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
R+ R+++CF+C + H+ NC K+ C C K GH +K+C R N
Sbjct: 384 RNQRKIKCFNCGKEGHLAKNCRAPRKRGCWKCGKEGHQMKDCTERQAN 431
>gi|55560845|gb|AAV53287.1| gag protein [Human immunodeficiency virus 1]
Length = 499
Score = 40.0 bits (92), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
R+ R+++CF+C + H+ NC K+ C C K GH +K+C R N
Sbjct: 384 RNQRKIKCFNCGKEGHLAKNCRAPRKRGCWKCGKEGHQMKDCTERQAN 431
>gi|259127229|gb|ACV94475.1| gag protein [Human immunodeficiency virus 1]
Length = 499
Score = 40.0 bits (92), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 152 NAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRP 208
NA A G KG R ++CF+C + HI NC K+ C C K GH +K+C R
Sbjct: 372 NAAAIMMQRGNFKG-PKRIIKCFNCGKEGHIAKNCRAPRKRGCWKCGKEGHQMKDCTERQ 430
Query: 209 QN 210
N
Sbjct: 431 AN 432
>gi|259126793|gb|ACV94298.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 40.0 bits (92), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R ++++CF+C + H+ NC KK C C K GH +KEC R N
Sbjct: 383 RGQKRIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKECTERQAN 430
>gi|259126770|gb|ACV94290.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 40.0 bits (92), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R ++++CF+C + H+ NC KK C C K GH +KEC R N
Sbjct: 383 RGQKRIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKECTERQAN 430
>gi|37934142|gb|AAO43908.1| gag-pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 575
Score = 40.0 bits (92), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 165 GRDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
G+ R V+CF+C + HI NC KK C C K GH +K+C R N
Sbjct: 31 GKQRRIVKCFNCGKDGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQAN 79
>gi|29243008|emb|CAD70670.1| Gag protein [Simian immunodeficiency virus - mon]
Length = 192
Score = 40.0 bits (92), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R Q++C++C ++ H+ NC K C C K GH K CP QN
Sbjct: 63 RQGXQIRCYNCGKFGHVAKNCTAPRKTGCFRCGKEGHXSKNCPNGGQN 110
>gi|19912262|dbj|BAB88553.1| gag polyprotein [Human immunodeficiency virus 1]
Length = 499
Score = 40.0 bits (92), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
+ V+CF+C + RHI NC KK C C K GH +K+C R N
Sbjct: 387 KTVKCFNCGKERHIAKNCRAPRKKGCWKCGKEGHQMKDCIERQAN 431
>gi|3808241|gb|AAC69279.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 496
Score = 40.0 bits (92), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
R R+++CF+C + H+ NC KK C C K GH +K+C R N
Sbjct: 381 RGQRRIKCFNCGKEGHLAKNCRAPRKKGCWKCGKEGHQMKDCTERQAN 428
>gi|259127241|gb|ACV94481.1| gag protein [Human immunodeficiency virus 1]
Length = 499
Score = 40.0 bits (92), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 152 NAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRP 208
NA A G KG R ++CF+C + HI NC K+ C C K GH +K+C R
Sbjct: 372 NAAAIMMQRGNFKG-PKRIIKCFNCGKEGHIAKNCRAPRKRGCWKCGKEGHQMKDCTERQ 430
Query: 209 QN 210
N
Sbjct: 431 AN 432
>gi|259126788|gb|ACV94296.1| gag protein [Human immunodeficiency virus 1]
gi|259126790|gb|ACV94297.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 40.0 bits (92), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R ++++CF+C + H+ NC KK C C K GH +KEC R N
Sbjct: 383 RGQKRIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKECTERQAN 430
>gi|166025716|gb|ABY78168.1| gag protein [Human immunodeficiency virus 1]
Length = 502
Score = 40.0 bits (92), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 137 RLATQTILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNY 193
R+ + + Q + ++AI + ++ G+ ++CF+C + H+ NC KK C
Sbjct: 361 RVLAEAMSQATNLTNSAIMMQRGNFRNPGKS---IKCFNCGKIGHLARNCKAPRKKGCWK 417
Query: 194 CKKPGHIIKECPTRPQN 210
C K GH +K+C R N
Sbjct: 418 CGKEGHQMKDCTERQAN 434
>gi|55560836|gb|AAV53283.1| gag protein [Human immunodeficiency virus 1]
Length = 499
Score = 40.0 bits (92), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
R+ R+++CF+C + H+ NC K+ C C K GH +K+C R N
Sbjct: 384 RNQRKIKCFNCGKEGHLAKNCRAPRKRGCWKCGKEGHQMKDCTERQAN 431
>gi|55560839|gb|AAV53284.1| gag protein [Human immunodeficiency virus 1]
Length = 499
Score = 40.0 bits (92), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
R+ R+++CF+C + H+ NC K+ C C K GH +K+C R N
Sbjct: 384 RNQRKIKCFNCGKEGHLAKNCRAPRKRGCWKCGKEGHQMKDCTERQAN 431
>gi|407735734|gb|AFU29108.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 40.0 bits (92), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 162 KSKGRDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
KS + R+++CF+C H+ NC KK C C K GH +K+C R N
Sbjct: 379 KSNFKGQRRIKCFNCGREGHLARNCRAPRKKGCWKCGKEGHQMKDCTERQAN 430
>gi|326654014|gb|AEA02889.1| gag protein [Human immunodeficiency virus 1]
Length = 490
Score = 40.0 bits (92), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
R+V+CF+C + HI NC KK C C K GH +K+C R N
Sbjct: 382 RKVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKDCTERQAN 426
>gi|259126776|gb|ACV94292.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 40.0 bits (92), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R ++++CF+C + H+ NC KK C C K GH +KEC R N
Sbjct: 383 RGQKRIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKECTERQAN 430
>gi|259126764|gb|ACV94287.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 40.0 bits (92), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R ++++CF+C + H+ NC KK C C K GH +KEC R N
Sbjct: 383 RGQKRIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKECTERQAN 430
>gi|259126754|gb|ACV94282.1| gag protein [Human immunodeficiency virus 1]
gi|259126774|gb|ACV94291.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 40.0 bits (92), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R ++++CF+C + H+ NC KK C C K GH +KEC R N
Sbjct: 383 RGQKRIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKECTERQAN 430
>gi|74052533|gb|AAZ95218.1| gag protein [Human immunodeficiency virus 1]
Length = 495
Score = 40.0 bits (92), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 162 KSKGRDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
KS R ++++CF+C + H+ NC KK C C K GH +K+C R N
Sbjct: 379 KSNFRGPKRIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDCTERQAN 430
>gi|19912260|dbj|BAB88552.1| gag polyprotein [Human immunodeficiency virus 1]
Length = 499
Score = 40.0 bits (92), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
+ V+CF+C + RHI NC KK C C K GH +K+C R N
Sbjct: 387 KTVKCFNCGKERHIAKNCRAPRKKGCWKCGKEGHQMKDCIERQAN 431
>gi|429249282|gb|AFZ77685.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 492
Score = 40.0 bits (92), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
+D ++++CF+C + H+ NC KK C C K GH +K+C R N
Sbjct: 377 KDQKRIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDCTERQAN 424
>gi|25166931|gb|AAN73709.1|AF484508_1 gag-pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 1436
Score = 40.0 bits (92), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 162 KSKGRDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
K R R+++CF+C + H+ NC KK C C + GH +K+C R N
Sbjct: 380 KGSFRSQRKIKCFNCGKEGHLARNCRAPRKKGCWKCGRGGHQMKDCTERQAN 431
>gi|407735729|gb|AFU29104.1| gag protein [Human immunodeficiency virus 1]
gi|407735744|gb|AFU29116.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 40.0 bits (92), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 162 KSKGRDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
KS + R+++CF+C H+ NC KK C C K GH +K+C R N
Sbjct: 379 KSNFKGQRRIKCFNCGREGHLARNCRAPRKKGCWKCGKEGHQMKDCTERQAN 430
>gi|300720873|gb|ADK33554.1| gag protein [Human immunodeficiency virus 1]
Length = 499
Score = 40.0 bits (92), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 162 KSKGRDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKEC 204
KS R ++V+CF+C + HI NC KK C C K GH +K+C
Sbjct: 377 KSNFRGSKRVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKDC 422
>gi|259126756|gb|ACV94283.1| gag protein [Human immunodeficiency virus 1]
gi|259126781|gb|ACV94294.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 40.0 bits (92), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R ++++CF+C + H+ NC KK C C K GH +KEC R N
Sbjct: 383 RGQKRIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKECTERQAN 430
>gi|238632988|gb|ACR51089.1| gag protein [Human immunodeficiency virus 1]
Length = 502
Score = 40.0 bits (92), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R ++CF+C + H+ NC KK C C K GH +KEC R N
Sbjct: 387 RTIKCFNCGKEEHLARNCRAPRKKGCWKCGKEGHQMKECTERQAN 431
>gi|147773033|emb|CAN60644.1| hypothetical protein VITISV_025693 [Vitis vinifera]
Length = 595
Score = 40.0 bits (92), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 55/237 (23%), Positives = 99/237 (41%), Gaps = 40/237 (16%)
Query: 4 IMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHL-----EYEIARYSQGDLSI 58
+ +V S+ + + +A ++WEYLK Y + K + E+E+ + + D ++
Sbjct: 73 LFAAVSPSIFIKIMKINSAXEIWEYLKXEYKGNERIKNMQVMNLIREFEMKKMRESD-AV 131
Query: 59 QNYLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMN- 117
++Y + + ++ A V ++ + E + + L+ L +Y+A S+L N
Sbjct: 132 KDYAAQLLSI-ADKVRLLGKEFSNEKIV-----------QKILVTLPEKYEATISSLENS 179
Query: 118 RDLSPSLDVCFKELLR-----EEQRL---------ATQTILQQNKMHDNAIAYAAAHGKS 163
+DLS + ELL E++RL A Q +Q+N H N +
Sbjct: 180 KDLS---TISLTELLHSLEAVEQRRLMRQGDTVEGAFQARMQKNAGHKNGKMNNNKPCSN 236
Query: 164 KGRDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQNCQASQAV 217
++ C CK+ H C CN C K GH+ C + Q + S AV
Sbjct: 237 NQKNGVFPPCPHCKKTNHSPQKCWWRPDVKCNKCGKQGHVEXICKNQQQE-ETSAAV 292
>gi|55416399|gb|AAV50163.1| gag protein [Human immunodeficiency virus 1]
Length = 467
Score = 40.0 bits (92), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECP 205
R ++++CF+C + H+ NC KK C C K GH +K+CP
Sbjct: 373 RGQKRIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDCP 415
>gi|371559504|gb|AEX36683.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 40.0 bits (92), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 162 KSKGRDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
KS R ++++CF+C + H+ NC KK C C K GH +K+C R N
Sbjct: 379 KSNFRGPKRIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDCTERQAN 430
>gi|300720096|gb|ADK33036.1| gag protein [Human immunodeficiency virus 1]
Length = 486
Score = 40.0 bits (92), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + HI NC KK C C K GH +K+C R N
Sbjct: 380 RXVKCFNCGKEGHIAXNCRAPRKKGCWKCGKEGHQMKDCTERQAN 424
>gi|289469418|gb|ADC96377.1| gag protein [Human immunodeficiency virus 1]
Length = 139
Score = 40.0 bits (92), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
+ ++CF+C + HI NC KK C C K GH +K+CP R N
Sbjct: 27 KNIKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCPERQAN 71
>gi|255986282|gb|ACU50524.1| gag protein [Human immunodeficiency virus 1]
Length = 508
Score = 40.0 bits (92), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 152 NAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRP 208
N+ A +G +G+ + V+CF+C + HI NC KK C C K GH +K+C R
Sbjct: 374 NSTAIMMQNGNFRGQR-KIVKCFNCGKEGHIAXNCKAPXKKGCWKCGKEGHQMKDCXERQ 432
Query: 209 QN 210
N
Sbjct: 433 AN 434
>gi|213137838|gb|ACJ44596.1| gag protein [Human immunodeficiency virus 1]
Length = 492
Score = 40.0 bits (92), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
R+V+CF+C + HI NC KK C C K GH +K+C R N
Sbjct: 384 RKVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQAN 428
>gi|166026136|gb|ABY78378.1| gag protein [Human immunodeficiency virus 1]
Length = 493
Score = 40.0 bits (92), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 165 GRDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKEC 204
G R+V+CF+C HI NC KK C C K GH +K+C
Sbjct: 384 GNQRRKVKCFNCGREGHIAKNCRAPRKKGCWKCGKEGHQMKDC 426
>gi|124389814|gb|ABN11089.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 40.0 bits (92), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
R R+++CF+C + H+ NC KK C C K GH +K+C R N
Sbjct: 383 RGQRKIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDCTERQAN 430
>gi|93210695|gb|ABF00670.1| gag protein [Human immunodeficiency virus 1]
Length = 492
Score = 40.0 bits (92), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
R+V+CF+C + HI NC KK C C K GH +K+C R N
Sbjct: 384 RKVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQAN 428
>gi|407740192|gb|AFU32837.1| gag protein [Human immunodeficiency virus 1]
gi|407740200|gb|AFU32844.1| gag protein [Human immunodeficiency virus 1]
gi|407740216|gb|AFU32858.1| gag protein [Human immunodeficiency virus 1]
gi|407740240|gb|AFU32879.1| gag protein [Human immunodeficiency virus 1]
gi|407740248|gb|AFU32886.1| gag protein [Human immunodeficiency virus 1]
Length = 494
Score = 40.0 bits (92), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
+ R+++CF+C + H+ NC KK C C K GH IK+C R N
Sbjct: 383 KGQRRIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQIKDCNERQAN 430
>gi|386306691|gb|AFJ05329.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 496
Score = 40.0 bits (92), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 62/160 (38%), Gaps = 25/160 (15%)
Query: 75 MIYVQVPIESLADVQGVHEQSKR--DQFLMKLRPEYKA------ARSNLMNRDLSPSLDV 126
++ + P+ L QG E + D+F LR E LM ++ +P +
Sbjct: 274 IVRMYSPVSILDIRQGPKEPFRDYVDRFFKTLRAEQATQDVKNWMTETLMIQNANPDCKI 333
Query: 127 CFKEL----LREEQRLATQTI---------LQQNKMHDNAIAYAAAHGKSKGRDMRQVQC 173
K L EE A Q + L + N+ G KG R V+C
Sbjct: 334 ILKGLGPGATLEEMMTACQGVGGPGHKARVLAEAMSQANSTNIMMQRGNFKG-PRRPVKC 392
Query: 174 FSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
F+C + HI NC KK C C K GH +K+C R N
Sbjct: 393 FNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQAN 432
>gi|328834182|gb|AEB52620.1| gag protein [Human immunodeficiency virus 1]
Length = 493
Score = 40.0 bits (92), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 8/66 (12%)
Query: 153 AIAYAAAHG-----KSKGRDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKEC 204
A++ AA H K R ++++CF+C + H+ NC KK C C K GH +K+C
Sbjct: 363 AMSQAAQHTNILMQKGNFRGQKRIKCFNCGKEGHVARNCRAPRKKGCWKCGKEGHQMKDC 422
Query: 205 PTRPQN 210
R N
Sbjct: 423 TERQAN 428
>gi|259128866|gb|ACV95128.1| gag protein [Human immunodeficiency virus 1]
Length = 495
Score = 40.0 bits (92), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R ++++CF+C + H+ NC KK C C K GH IK+C R N
Sbjct: 383 RGQKRIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQIKDCTERQAN 430
>gi|259126762|gb|ACV94286.1| gag protein [Human immunodeficiency virus 1]
gi|259126766|gb|ACV94288.1| gag protein [Human immunodeficiency virus 1]
gi|259126778|gb|ACV94293.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 40.0 bits (92), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R ++++CF+C + H+ NC KK C C K GH +KEC R N
Sbjct: 383 RGQKRIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKECTERQAN 430
>gi|259126758|gb|ACV94284.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 40.0 bits (92), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R ++++CF+C + H+ NC KK C C K GH +KEC R N
Sbjct: 383 RGQKRIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKECTERQAN 430
>gi|195409369|gb|ACF95939.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 40.0 bits (92), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 153 AIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQ 209
A A G KG R ++CF+C + H+ NC KK C C K GH +KEC R
Sbjct: 371 AAAIMMQKGNFKG-PRRNIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKECTERQA 429
Query: 210 N 210
N
Sbjct: 430 N 430
>gi|55416397|gb|AAV50162.1| gag protein [Human immunodeficiency virus 1]
Length = 483
Score = 40.0 bits (92), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 154 IAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
+A G KG R ++CF+C + HI NC KK C C K GH +KEC R N
Sbjct: 360 VAIMMQRGNFKG-PRRIIKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKECTERQAN 418
>gi|259129283|gb|ACV95297.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 40.0 bits (92), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R ++++CF+C + H+ NC KK C C K GH IK+C R N
Sbjct: 383 RGQKRIKCFNCGKEGHLAKNCRAPRKKGCWKCGKEGHQIKDCTERQAN 430
>gi|259126768|gb|ACV94289.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 40.0 bits (92), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R ++++CF+C + H+ NC KK C C K GH +KEC R N
Sbjct: 383 RGQKRIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKECTERQAN 430
>gi|46946958|gb|AAT06705.1| gag protein [Human immunodeficiency virus 1]
Length = 348
Score = 40.0 bits (92), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 161 GKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
GK KG R+++CF+C + H+ NC KK C C K GH +K+C R N
Sbjct: 229 GKIKG-GQRRIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDCTERQAN 280
>gi|82571349|gb|ABB84112.1| gag protein [Human immunodeficiency virus 1]
Length = 503
Score = 39.7 bits (91), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 143 ILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGH 199
+L + N I G KG ++V+CF+C + HI NC KK C C K GH
Sbjct: 364 VLAEAMSQANNINIMMQRGNFKGS--KRVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGH 421
Query: 200 IIKECPTRPQN 210
+K+C R N
Sbjct: 422 QMKDCTERQAN 432
>gi|407735749|gb|AFU29120.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 39.7 bits (91), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 162 KSKGRDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
KS + R+++CF+C H+ NC KK C C K GH +K+C R N
Sbjct: 379 KSNFKGQRRIKCFNCGREGHLARNCRAPRKKGCWKCGKEGHQMKDCTERQAN 430
>gi|386306678|gb|AFJ05323.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 496
Score = 39.7 bits (91), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 62/160 (38%), Gaps = 25/160 (15%)
Query: 75 MIYVQVPIESLADVQGVHEQSKR--DQFLMKLRPEYKA------ARSNLMNRDLSPSLDV 126
++ + P+ L QG E + D+F LR E LM ++ +P +
Sbjct: 274 IVRMYSPVSILDIRQGPKEPFRDYVDRFFKTLRAEQATQDVKNWMTETLMIQNANPDCKI 333
Query: 127 CFKEL----LREEQRLATQTI---------LQQNKMHDNAIAYAAAHGKSKGRDMRQVQC 173
K L EE A Q + L + N+ G KG R V+C
Sbjct: 334 ILKGLGPGATLEEMMTACQGVGGPGHKARVLAEAMSQANSTNIMMQRGNFKG-PRRPVKC 392
Query: 174 FSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
F+C + HI NC KK C C K GH +K+C R N
Sbjct: 393 FNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQAN 432
>gi|386306654|gb|AFJ05311.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 496
Score = 39.7 bits (91), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R V+CF+C + HI NC KK C C K GH +KEC R N
Sbjct: 384 RIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKECTERQAN 428
>gi|376404901|gb|AFB37206.1| gag protein [Human immunodeficiency virus 1]
Length = 500
Score = 39.7 bits (91), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 162 KSKGRDMRQ-VQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
K RD R+ V+CF+C + HI NC KK C C K GH +K+C R N
Sbjct: 380 KGNFRDQRKTVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQAN 432
>gi|86560244|gb|ABD04298.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 39.7 bits (91), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
+ V+CF+C + HI NC KK C C K GH++K+C R N
Sbjct: 386 KTVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHLMKDCTERQAN 430
>gi|386306936|gb|AFJ05448.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 497
Score = 39.7 bits (91), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R ++CF+C + HI NC KK C C K GH +KEC R N
Sbjct: 383 RTIKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKECTERQAN 427
>gi|242029842|gb|ACS76948.1| gag protein [Human immunodeficiency virus 1]
Length = 456
Score = 39.7 bits (91), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
R ++CF+C + H+ NC +KK C C + GH++K+C R N
Sbjct: 370 RPIKCFNCGKEGHLARNCRAPSKKACWKCGREGHLMKDCTERQDN 414
>gi|259126783|gb|ACV94295.1| gag protein [Human immunodeficiency virus 1]
gi|259126795|gb|ACV94299.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 39.7 bits (91), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R ++++CF+C + H+ NC KK C C K GH +KEC R N
Sbjct: 383 RGQKRIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKECTERQAN 430
>gi|193794915|gb|ACF21606.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 39.7 bits (91), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
R ++++CF+C + HI NC KK C C K GH +K+C R N
Sbjct: 383 RGQKRIKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQAN 430
>gi|38491619|gb|AAR22016.1| gag protein [Human immunodeficiency virus 1]
Length = 490
Score = 39.7 bits (91), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 162 KSKGRDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
KS R R ++CF+C + H+ NC K+ C C K GH +K+C R N
Sbjct: 373 KSNFRGQRTIKCFNCGKEGHLARNCRAPRKRGCWKCGKEGHQMKDCTERQAN 424
>gi|386306685|gb|AFJ05326.1| gag protein, partial [Human immunodeficiency virus 1]
gi|386306687|gb|AFJ05327.1| gag protein, partial [Human immunodeficiency virus 1]
gi|386306689|gb|AFJ05328.1| gag protein, partial [Human immunodeficiency virus 1]
gi|386306693|gb|AFJ05330.1| gag protein, partial [Human immunodeficiency virus 1]
gi|386306695|gb|AFJ05331.1| gag protein, partial [Human immunodeficiency virus 1]
gi|386306699|gb|AFJ05333.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 496
Score = 39.7 bits (91), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 62/160 (38%), Gaps = 25/160 (15%)
Query: 75 MIYVQVPIESLADVQGVHEQSKR--DQFLMKLRPEYKA------ARSNLMNRDLSPSLDV 126
++ + P+ L QG E + D+F LR E LM ++ +P +
Sbjct: 274 IVRMYSPVSILDIRQGPKEPFRDYVDRFFKTLRAEQATQDVKNWMTETLMIQNANPDCKI 333
Query: 127 CFKEL----LREEQRLATQTI---------LQQNKMHDNAIAYAAAHGKSKGRDMRQVQC 173
K L EE A Q + L + N+ G KG R V+C
Sbjct: 334 ILKGLGPGATLEEMMTACQGVGGPGHKARVLAEAMSQANSTNIMMQRGNFKG-PRRPVKC 392
Query: 174 FSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
F+C + HI NC KK C C K GH +K+C R N
Sbjct: 393 FNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQAN 432
>gi|328834216|gb|AEB52650.1| gag protein [Human immunodeficiency virus 1]
Length = 499
Score = 39.7 bits (91), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 162 KSKGRDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
KS R ++++CF+C + H+ NC KK C C K GH +K+C R N
Sbjct: 380 KSNFRGPKRIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDCTERQAN 431
>gi|259126752|gb|ACV94281.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 39.7 bits (91), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
R ++++CF+C + H+ NC KK C C K GH +KEC R N
Sbjct: 383 RGQKRIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKECTERQAN 430
>gi|195954533|gb|ACG58959.1| gag protein [Human immunodeficiency virus 1]
Length = 338
Score = 39.7 bits (91), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 162 KSKGRDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
KS R ++++CF+C + H+ NC KK C C K GH +K+C R N
Sbjct: 219 KSNFRGTKRIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDCTERQAN 270
>gi|166026324|gb|ABY78472.1| gag protein [Human immunodeficiency virus 1]
Length = 502
Score = 39.7 bits (91), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 165 GRDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
G + V+CF+C + HI NC KK C C K GH +K+C R N
Sbjct: 384 GNQRKTVKCFNCGKVGHIAKNCRAPRKKGCWKCGKEGHQMKDCDGRQAN 432
>gi|147842128|emb|CAN78096.1| hypothetical protein VITISV_037415 [Vitis vinifera]
Length = 546
Score = 39.7 bits (91), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 1 MTWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQ-DNTAKCFHLEYEIARYSQGDLSIQ 59
MTW++ S+D+ + N Y T ++W+ ++Y+ N ++ + L ++ Q D +
Sbjct: 37 MTWLINSIDEDISSNYMCYSTVNELWDNANQMYSDLGNQSQVYELTLKLGEIRQCDDMVT 96
Query: 60 NYLSGIQNLW 69
Y + ++ LW
Sbjct: 97 KYFNSLKRLW 106
>gi|147804686|emb|CAN69190.1| hypothetical protein VITISV_001578 [Vitis vinifera]
Length = 1323
Score = 39.7 bits (91), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 39/67 (58%)
Query: 2 TWIMGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNY 61
+WI+ +++ + ++ Y TA ++WE L + ++Q N + F ++ +IA Q LS+ Y
Sbjct: 89 SWIVNTLNPEIADSVIYYSTAHEVWEDLCERFSQSNAPRIFEIQRDIACLRQEQLSVSAY 148
Query: 62 LSGIQNL 68
+ ++ L
Sbjct: 149 YTKLKGL 155
>gi|73913784|gb|AAZ91766.1| gag protein [Human immunodeficiency virus 1]
Length = 488
Score = 39.7 bits (91), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
R R V+CF+C + HI NC KK C C K GH +K+C R N
Sbjct: 377 RSKRIVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKDCTERQAN 424
>gi|55560831|gb|AAV53281.1| gag protein [Human immunodeficiency virus 1]
Length = 499
Score = 39.7 bits (91), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
R+ R+++CF+C + H+ NC K+ C C K GH +K+C R N
Sbjct: 384 RNQRKIKCFNCGKEGHLAKNCRAPRKRGCWKCGKEGHQMKDCTERQAN 431
>gi|386306697|gb|AFJ05332.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 496
Score = 39.7 bits (91), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 62/160 (38%), Gaps = 25/160 (15%)
Query: 75 MIYVQVPIESLADVQGVHEQSKR--DQFLMKLRPEYKA------ARSNLMNRDLSPSLDV 126
++ + P+ L QG E + D+F LR E LM ++ +P +
Sbjct: 274 IVRMYSPVSILDIRQGPKEPFRDYVDRFFKTLRAEQATQDVKNWMTETLMIQNANPDCKI 333
Query: 127 CFKEL----LREEQRLATQTI---------LQQNKMHDNAIAYAAAHGKSKGRDMRQVQC 173
K L EE A Q + L + N+ G KG R V+C
Sbjct: 334 ILKGLGPGATLEEMMTACQGVGGPGHKARVLAEAMSQANSTNIMMQRGNFKG-PRRPVKC 392
Query: 174 FSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
F+C + HI NC KK C C K GH +K+C R N
Sbjct: 393 FNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQAN 432
>gi|326417064|gb|ADZ73375.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 39.7 bits (91), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
R R+++CF+C H+ NC KK C C K GH +K+C R N
Sbjct: 383 RGQRRIKCFNCGREGHLAKNCRAPRKKGCWKCGKEGHQMKDCTERQAN 430
>gi|300719985|gb|ADK32962.1| gag protein [Human immunodeficiency virus 1]
Length = 492
Score = 39.7 bits (91), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 169 RQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
R+V+CF+C + HI NC KK C C K GH +K+C R N
Sbjct: 384 RKVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKDCTERQAN 428
>gi|299929725|gb|ADJ58070.1| gag protein [Human immunodeficiency virus 1]
Length = 502
Score = 39.7 bits (91), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Query: 143 ILQQNKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGH 199
+L + H + G KG+ ++++CF+C + H+ NC KK C C K GH
Sbjct: 362 VLAEAMSHVQPVNIMMQRGNFKGQ--KRIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGH 419
Query: 200 IIKECPTRPQN 210
+KEC R N
Sbjct: 420 QMKECTERQAN 430
>gi|254667077|gb|ACT76474.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 39.7 bits (91), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 166 RDMRQVQCFSCKEYRHIIVNC---AKKFCNYCKKPGHIIKECPTRPQN 210
+D ++++CF+C + H+ NC KK C C K GH +K+C R N
Sbjct: 383 KDRKRIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDCTERQAN 430
>gi|555023|gb|AAA81526.1| core protein, partial [Human immunodeficiency virus 1]
Length = 497
Score = 39.7 bits (91), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 162 KSKGRDMRQ-VQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKECPTRPQN 210
K K R+ R+ V+CF+C + HI NC KK C C K GH +K+C R N
Sbjct: 380 KGKFRNQRKIVKCFNCGKEGHIAKNCRAPRKKGCWRCGKEGHQMKDCTERQAN 432
>gi|391379771|gb|AFM44393.1| gag protein [Human immunodeficiency virus 1]
Length = 500
Score = 39.7 bits (91), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 147 NKMHDNAIAYAAAHGKSKGRDMRQVQCFSCKEYRHIIVNCA---KKFCNYCKKPGHIIKE 203
+++ + A G KG R ++CF+C + HI NC KK C C K GH +KE
Sbjct: 368 SQVTNTGAAMMMQRGNFKG-PKRIIKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKE 426
Query: 204 CPTRPQN 210
C R N
Sbjct: 427 CTERQAN 433
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.321 0.132 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,277,417,814
Number of Sequences: 23463169
Number of extensions: 122161128
Number of successful extensions: 379298
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 271
Number of HSP's successfully gapped in prelim test: 17477
Number of HSP's that attempted gapping in prelim test: 340400
Number of HSP's gapped (non-prelim): 24011
length of query: 220
length of database: 8,064,228,071
effective HSP length: 137
effective length of query: 83
effective length of database: 9,144,741,214
effective search space: 759013520762
effective search space used: 759013520762
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 74 (33.1 bits)