Query 045690
Match_columns 220
No_of_seqs 103 out of 1382
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 07:31:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045690.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045690hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ec7_A GAG polyprotein (PR55GA 99.0 2.5E-10 8.7E-15 65.8 4.0 41 169-209 5-48 (49)
2 2bl6_A Nucleocapsid protein P1 98.9 6.6E-10 2.3E-14 60.1 3.0 35 172-206 2-37 (37)
3 2ihx_A Nucleocapsid (NC) prote 98.9 8E-10 2.8E-14 66.8 3.4 41 170-210 4-52 (61)
4 2a51_A Nucleocapsid protein; s 98.9 8.6E-10 2.9E-14 60.4 3.0 35 172-206 2-39 (39)
5 1a1t_A Nucleocapsid protein; s 98.9 9.3E-10 3.2E-14 65.1 3.3 40 170-209 12-54 (55)
6 3ts2_A Protein LIN-28 homolog 98.9 1.4E-09 4.9E-14 77.6 4.5 45 169-213 96-144 (148)
7 2li8_A Protein LIN-28 homolog 98.9 1.7E-09 5.6E-14 67.7 4.2 41 169-209 23-67 (74)
8 2cqf_A RNA-binding protein LIN 98.9 1.8E-09 6.2E-14 65.6 4.2 40 170-209 7-50 (63)
9 1cl4_A Protein (GAG polyprotei 98.8 1.8E-09 6.3E-14 65.0 2.5 38 172-209 3-51 (60)
10 1a6b_B Momulv, zinc finger pro 98.6 1.9E-08 6.4E-13 54.6 3.0 27 187-213 9-35 (40)
11 3nyb_B Protein AIR2; polya RNA 98.6 5.3E-08 1.8E-12 62.1 3.9 37 173-209 27-67 (83)
12 1u6p_A GAG polyprotein; MLV, A 98.5 5.1E-08 1.8E-12 57.1 2.9 27 186-212 21-47 (56)
13 1dsq_A Nucleic acid binding pr 98.5 4.6E-08 1.6E-12 48.2 1.6 21 189-209 3-23 (26)
14 1nc8_A Nucleocapsid protein; H 98.4 1.1E-07 3.9E-12 48.1 2.5 21 189-209 7-27 (29)
15 2ysa_A Retinoblastoma-binding 98.1 9.6E-07 3.3E-11 51.4 1.5 20 188-207 7-26 (55)
16 2lli_A Protein AIR2; RNA surve 98.0 2.5E-06 8.6E-11 59.0 2.9 36 172-207 24-61 (124)
17 2lli_A Protein AIR2; RNA surve 97.9 8.8E-06 3E-10 56.3 3.4 38 171-208 43-84 (124)
18 2li8_A Protein LIN-28 homolog 97.6 1.6E-05 5.5E-10 49.5 1.4 21 187-207 23-43 (74)
19 1a1t_A Nucleocapsid protein; s 97.6 3.8E-05 1.3E-09 45.0 2.4 24 184-207 8-31 (55)
20 2ec7_A GAG polyprotein (PR55GA 97.5 5.2E-05 1.8E-09 43.2 2.2 20 188-207 6-25 (49)
21 2a51_A Nucleocapsid protein; s 97.4 5E-05 1.7E-09 41.1 1.6 18 190-207 2-19 (39)
22 2bl6_A Nucleocapsid protein P1 97.4 5.8E-05 2E-09 40.3 1.5 18 190-207 2-19 (37)
23 2ihx_A Nucleocapsid (NC) prote 97.1 0.0002 7E-09 42.7 1.7 21 189-209 5-25 (61)
24 1cl4_A Protein (GAG polyprotei 97.0 0.0001 3.6E-09 43.9 0.0 19 190-208 3-21 (60)
25 2cqf_A RNA-binding protein LIN 96.8 0.00036 1.2E-08 41.9 1.4 19 189-207 8-26 (63)
26 3ts2_A Protein LIN-28 homolog 96.8 0.00076 2.6E-08 47.8 2.9 21 188-208 97-117 (148)
27 3nyb_B Protein AIR2; polya RNA 96.3 0.0011 3.7E-08 42.1 0.8 38 170-207 5-43 (83)
28 1a6b_B Momulv, zinc finger pro 95.2 0.014 4.9E-07 31.3 2.4 24 166-189 6-29 (40)
29 1dsq_A Nucleic acid binding pr 94.8 0.015 5.2E-07 28.0 1.7 19 171-189 3-21 (26)
30 1u6p_A GAG polyprotein; MLV, A 94.5 0.027 9.3E-07 32.6 2.6 24 166-189 19-42 (56)
31 1nc8_A Nucleocapsid protein; H 93.3 0.061 2.1E-06 26.5 2.3 20 170-189 6-25 (29)
32 2hqh_E Restin; beta/BETA struc 91.8 0.051 1.8E-06 25.7 0.8 19 188-206 3-21 (26)
33 2ysa_A Retinoblastoma-binding 90.8 0.15 5.1E-06 29.4 2.2 20 170-189 7-26 (55)
34 2pzo_E CAP-Gly domain-containi 85.7 0.24 8.3E-06 26.2 0.8 22 185-206 17-38 (42)
35 3alr_A Nanos protein; zinc-fin 79.9 0.72 2.5E-05 29.9 1.4 20 190-209 73-95 (106)
36 3e2u_E CAP-Gly domain-containi 78.4 0.66 2.3E-05 24.7 0.7 19 188-206 20-38 (42)
37 3zyq_A Hepatocyte growth facto 77.9 18 0.00062 27.0 9.0 58 12-69 32-97 (226)
38 1hbw_A Regulatory protein GAL4 63.6 3.4 0.00012 23.3 1.5 44 61-104 4-47 (57)
39 2cr7_A Paired amphipathic heli 56.2 18 0.00061 22.2 4.1 51 18-69 9-59 (80)
40 2czy_A Paired amphipathic heli 56.0 16 0.00054 22.3 3.8 49 20-69 5-53 (77)
41 1deq_A Fibrinogen (alpha chain 50.6 79 0.0027 25.6 7.8 39 35-73 63-101 (390)
42 3sol_A Type II secretion pathw 44.7 35 0.0012 21.7 4.1 69 19-88 10-80 (94)
43 2lh0_A Histone chaperone RTT10 44.4 23 0.0008 21.1 3.0 32 100-133 8-39 (70)
44 3g2b_A Coenzyme PQQ synthesis 41.5 46 0.0016 21.0 4.4 32 5-36 41-72 (95)
45 3g1g_A GAG polyprotein, capsid 40.5 65 0.0022 20.0 5.5 70 50-135 5-76 (87)
46 3lcz_A YCZA, inhibitor of trap 38.4 13 0.00046 20.8 1.3 25 172-200 11-35 (53)
47 3kxe_C Antitoxin protein PARD- 38.1 72 0.0025 19.9 5.0 33 102-134 8-40 (88)
48 2khf_A PLNJ; anti-microbial, b 37.1 21 0.0007 16.1 1.5 18 22-39 3-20 (26)
49 2yvk_A Methylthioribose-1-phos 35.4 1.8E+02 0.006 23.5 9.2 60 17-76 54-115 (374)
50 1e91_A Paired amphipathic heli 33.6 39 0.0013 20.9 3.0 49 20-69 8-66 (85)
51 3tir_A ROUS sarcoma virus caps 33.1 1.3E+02 0.0045 22.4 6.3 40 22-70 136-176 (226)
52 4ayb_P DNA-directed RNA polyme 30.0 30 0.001 18.9 1.7 10 187-196 22-31 (48)
53 4a56_A PULS, pullulanase secre 30.0 76 0.0026 20.1 3.9 70 18-88 9-80 (93)
54 2js5_A Uncharacterized protein 29.2 16 0.00055 21.9 0.6 15 99-113 28-42 (71)
55 2w9y_A CE-FAR-7, fatty acid/re 28.7 1.4E+02 0.0049 20.4 6.3 7 122-128 108-114 (140)
56 3mwm_A ZUR, putative metal upt 28.2 88 0.003 21.0 4.5 33 18-50 28-60 (139)
57 2e72_A POGO transposable eleme 28.1 26 0.00089 19.2 1.3 24 188-211 12-43 (49)
58 3aa0_C 21MER peptide from leuc 28.0 22 0.00075 16.1 0.8 23 197-219 2-24 (26)
59 3ljm_A Coil Ser L9C; de novo d 27.8 37 0.0013 15.9 1.6 25 26-51 3-27 (31)
60 3a11_A Translation initiation 27.6 2.3E+02 0.0078 22.4 10.1 63 16-78 17-81 (338)
61 2odb_B Serine/threonine-protei 27.3 17 0.00059 18.3 0.5 12 100-111 22-33 (35)
62 1r5q_A KAI A, circadian oscill 26.5 74 0.0025 20.2 3.3 31 100-130 10-42 (102)
63 2bx9_A Anti-trap, AT, tryptoph 25.2 31 0.0011 19.3 1.4 26 172-201 11-36 (53)
64 2l8e_A Polyhomeotic-like prote 24.7 22 0.00076 19.6 0.6 12 189-200 19-30 (49)
65 1nlt_A Protein YDJ1, mitochond 24.5 58 0.002 24.6 3.2 38 171-208 55-103 (248)
66 2o03_A Probable zinc uptake re 24.4 95 0.0033 20.5 4.0 33 17-49 24-56 (131)
67 2xig_A Ferric uptake regulatio 24.3 1.3E+02 0.0044 20.5 4.8 26 18-43 41-66 (150)
68 4ets_A Ferric uptake regulatio 24.1 1.5E+02 0.005 20.6 5.1 26 18-43 47-74 (162)
69 1mzb_A Ferric uptake regulatio 23.8 1.3E+02 0.0045 19.9 4.7 34 18-51 33-66 (136)
70 1vdy_A Hypothetical protein (R 23.0 1.4E+02 0.0047 20.4 4.6 55 21-75 46-101 (140)
71 2f05_A Paired amphipathic heli 22.6 72 0.0025 20.6 2.9 70 20-111 8-87 (105)
72 4aj5_1 SKA3, spindle and kinet 22.2 1.6E+02 0.0055 18.8 5.4 17 57-73 3-19 (101)
73 1ef4_A Subunit N, DNA-directed 22.0 26 0.00089 19.8 0.6 8 190-197 5-12 (55)
74 1eh2_A EPS15; calcium binding, 21.3 1.6E+02 0.0056 18.6 4.7 25 55-82 64-88 (106)
75 2w57_A Ferric uptake regulatio 21.3 1.3E+02 0.0045 20.4 4.3 31 18-48 32-62 (150)
76 4ayb_N DNA-directed RNA polyme 21.0 27 0.00091 20.6 0.5 9 189-197 5-13 (66)
77 1deq_A Fibrinogen (alpha chain 21.0 62 0.0021 26.2 2.7 51 22-72 90-143 (390)
78 2ds5_A CLPX, ATP-dependent CLP 20.9 35 0.0012 18.9 1.0 12 189-200 12-23 (51)
79 2an7_A Protein PARD; bacterial 20.7 1.6E+02 0.0053 18.1 4.0 35 46-80 14-57 (83)
80 3fia_A Intersectin-1; EH 1 dom 20.6 1.9E+02 0.0064 19.1 4.8 25 55-82 82-106 (121)
81 3a4c_A DNA replication factor 20.5 1.4E+02 0.0047 19.4 3.9 39 95-133 6-45 (106)
82 3r2v_A PB2 C-terminal subunit; 20.3 1.3E+02 0.0045 21.1 4.0 53 26-78 20-72 (216)
83 2lnh_A N-WAsp, neural wiskott- 20.3 48 0.0016 19.4 1.5 14 101-114 20-33 (65)
84 1dvp_A HRS, hepatocyte growth 20.1 2.6E+02 0.0088 20.4 8.6 58 12-69 29-94 (220)
No 1
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=99.02 E-value=2.5e-10 Score=65.78 Aligned_cols=41 Identities=29% Similarity=0.799 Sum_probs=36.3
Q ss_pred CCccccccCCCccccccccCc---cccccccccccccCCCCCCC
Q 045690 169 RQVQCFSCKEYRHIIVNCAKK---FCNYCKKPGHIIKECPTRPQ 209 (220)
Q Consensus 169 ~~~~~~~~~~~g~~~~~~~~~---~C~~C~k~GH~~~~C~~~~~ 209 (220)
....||.|+..||.++.|+.+ .||.|++.||++++||.++.
T Consensus 5 r~~~C~~Cg~~GH~a~~C~~~~~~~C~~Cg~~GH~~~~C~~~~~ 48 (49)
T 2ec7_A 5 KVIRCWNCGKEGHSARQCRAPRRQGCWKCGKTGHVMAKCPERQA 48 (49)
T ss_dssp CCCBCTTTCCBTCCTTTCCCSSCCSCSSSCCSSCCGGGCCSSCC
T ss_pred CcCeeeecCCCCcChhhCcCCCCCeeCcCCCcCCccCCCcCCCC
Confidence 345799999999999999874 79999999999999998764
No 2
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=98.92 E-value=6.6e-10 Score=60.07 Aligned_cols=35 Identities=37% Similarity=0.993 Sum_probs=32.3
Q ss_pred cccccCCCccccccccC-ccccccccccccccCCCC
Q 045690 172 QCFSCKEYRHIIVNCAK-KFCNYCKKPGHIIKECPT 206 (220)
Q Consensus 172 ~~~~~~~~g~~~~~~~~-~~C~~C~k~GH~~~~C~~ 206 (220)
.||+|+..||.++.|+. ..||.|++.||++++||.
T Consensus 2 ~C~~Cg~~GH~~~~C~~~~~C~~Cg~~GH~a~~C~~ 37 (37)
T 2bl6_A 2 TCYNCGKPGHLSSQCRAPKVCFKCKQPGHFSKQCRS 37 (37)
T ss_dssp CBSSSCCSSCCTTTSSCBTTCSSCCCTTGGGGTTCC
T ss_pred cccccCCCCcchhhCcCcCeEccCCCcCCccCcCcC
Confidence 58999999999999987 489999999999999985
No 3
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=98.91 E-value=8e-10 Score=66.76 Aligned_cols=41 Identities=34% Similarity=0.754 Sum_probs=35.3
Q ss_pred CccccccCCCccccccccCc--------cccccccccccccCCCCCCCC
Q 045690 170 QVQCFSCKEYRHIIVNCAKK--------FCNYCKKPGHIIKECPTRPQN 210 (220)
Q Consensus 170 ~~~~~~~~~~g~~~~~~~~~--------~C~~C~k~GH~~~~C~~~~~~ 210 (220)
...||.|+..||.++.|+.. .||.|++.||++++||.++..
T Consensus 4 ~~~C~~Cg~~GH~a~~C~~~~~~~~~~~~C~~Cg~~GH~ar~C~~~~~~ 52 (61)
T 2ihx_A 4 RGLCYTCGSPGHYQAQCPKKRKSGNSRERCQLCNGMGHNAKQCRKRDGN 52 (61)
T ss_dssp TTBCSSSCCBTCCGGGCTTTTSSSCCCSBCTTTCCBSSCGGGCCCCC--
T ss_pred CCcccccCCCCeehhhCcCCcCCCCCCCeeCCCCCCCCCcCCCcCCCcC
Confidence 34699999999999999873 699999999999999998754
No 4
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=98.90 E-value=8.6e-10 Score=60.36 Aligned_cols=35 Identities=29% Similarity=0.728 Sum_probs=32.3
Q ss_pred cccccCCCccccccccC---ccccccccccccccCCCC
Q 045690 172 QCFSCKEYRHIIVNCAK---KFCNYCKKPGHIIKECPT 206 (220)
Q Consensus 172 ~~~~~~~~g~~~~~~~~---~~C~~C~k~GH~~~~C~~ 206 (220)
.||+|+..||.++.|+. ..||.|++.||++++||+
T Consensus 2 ~C~~Cg~~GH~a~~C~~~~~~~C~~Cg~~GH~~~~C~~ 39 (39)
T 2a51_A 2 TCFNCGKPGHTARMCRQPRQEGCWNCGSKEHRFAQCPK 39 (39)
T ss_dssp BCTTTCCBSSCTTTCCSCCCSSCTTTCCSSSCTTTSCC
T ss_pred eeeccCCCCcccccCCCCCCCccccCCCCCCccCcCcC
Confidence 58999999999999986 489999999999999985
No 5
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=98.89 E-value=9.3e-10 Score=65.13 Aligned_cols=40 Identities=43% Similarity=0.881 Sum_probs=35.7
Q ss_pred CccccccCCCccccccccC---ccccccccccccccCCCCCCC
Q 045690 170 QVQCFSCKEYRHIIVNCAK---KFCNYCKKPGHIIKECPTRPQ 209 (220)
Q Consensus 170 ~~~~~~~~~~g~~~~~~~~---~~C~~C~k~GH~~~~C~~~~~ 209 (220)
...||.|+..||.++.|+. ..||.|++.||++++||.++.
T Consensus 12 ~~~C~~Cg~~GH~a~~C~~~~~~~C~~Cg~~GH~~~~C~~~~~ 54 (55)
T 1a1t_A 12 TVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQA 54 (55)
T ss_dssp TCBCTTTCCBSSCGGGCSSCSCCBCTTTCCBSSCGGGCSSSCC
T ss_pred CcceeeeCCCCcChhhcCCCCCCEeCCCCCcCCccCCCcCcCC
Confidence 4579999999999999976 489999999999999998754
No 6
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=98.88 E-value=1.4e-09 Score=77.59 Aligned_cols=45 Identities=24% Similarity=0.724 Sum_probs=37.3
Q ss_pred CCccccccCCCccccccccC----ccccccccccccccCCCCCCCCCcc
Q 045690 169 RQVQCFSCKEYRHIIVNCAK----KFCNYCKKPGHIIKECPTRPQNCQA 213 (220)
Q Consensus 169 ~~~~~~~~~~~g~~~~~~~~----~~C~~C~k~GH~~~~C~~~~~~~~~ 213 (220)
+...||+|+..||.++.|+. ..||.|++.||++++||.+.+....
T Consensus 96 ~~~~C~~Cg~~GH~a~~C~~~~~~~~C~~Cg~~GH~~r~Cp~~~~~~~~ 144 (148)
T 3ts2_A 96 GGDRCYNCGGLDHHAKECKLPPQPKKCHFCQSINHMVASCPLKAQQGPS 144 (148)
T ss_dssp CSCCCTTTCCSSCCGGGCCSCCCCCCCTTTCCSSCCGGGCTTTTC----
T ss_pred CCCcccEeCCccchhhhCCCCCCCCcccccCCcCCEeccCcCCCCCCCc
Confidence 34579999999999999987 5899999999999999998765433
No 7
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=98.88 E-value=1.7e-09 Score=67.71 Aligned_cols=41 Identities=27% Similarity=0.827 Sum_probs=36.3
Q ss_pred CCccccccCCCccccccccC----ccccccccccccccCCCCCCC
Q 045690 169 RQVQCFSCKEYRHIIVNCAK----KFCNYCKKPGHIIKECPTRPQ 209 (220)
Q Consensus 169 ~~~~~~~~~~~g~~~~~~~~----~~C~~C~k~GH~~~~C~~~~~ 209 (220)
....||.|+..||.+++|+. ..||.|++.||++++||.+..
T Consensus 23 r~~~C~~Cg~~GH~a~~C~~~~~~~~C~~Cg~~GH~ar~Cp~~~~ 67 (74)
T 2li8_A 23 KGDRCYNCGGLDHHAKECKLPPQPKKCHFCQSISHMVASCPLKAQ 67 (74)
T ss_dssp TTSCCTTTCCSSSCTTTCSSCCCCCCCTTTCCTTSCGGGCTTGGG
T ss_pred CCCcccccCCcCcCcccCCCCCCCCccCCcCCcCCccCcCcCCcC
Confidence 44579999999999999984 589999999999999998764
No 8
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.88 E-value=1.8e-09 Score=65.57 Aligned_cols=40 Identities=28% Similarity=0.838 Sum_probs=35.5
Q ss_pred CccccccCCCcccccccc----CccccccccccccccCCCCCCC
Q 045690 170 QVQCFSCKEYRHIIVNCA----KKFCNYCKKPGHIIKECPTRPQ 209 (220)
Q Consensus 170 ~~~~~~~~~~g~~~~~~~----~~~C~~C~k~GH~~~~C~~~~~ 209 (220)
...||.|+..||.+++|+ ...||.|++.||++++||..+.
T Consensus 7 ~~~C~~Cg~~GH~a~~C~~~~~~~~C~~Cg~~GH~ar~Cp~~~~ 50 (63)
T 2cqf_A 7 GDRCYNCGGLDHHAKECKLPPQPKKCHFCQSISHMVASCPLKAQ 50 (63)
T ss_dssp CCCCSSSCCSSSCTTTCCSCCCSSCCTTTCCSSSCTTTCTGGGC
T ss_pred CCcccccCCCCcChhhCCCCCCCCccCCcCCcCCccCcCCCccc
Confidence 356999999999999998 4589999999999999998754
No 9
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=98.81 E-value=1.8e-09 Score=65.05 Aligned_cols=38 Identities=32% Similarity=0.840 Sum_probs=19.0
Q ss_pred cccccCCCccccccccC-----------ccccccccccccccCCCCCCC
Q 045690 172 QCFSCKEYRHIIVNCAK-----------KFCNYCKKPGHIIKECPTRPQ 209 (220)
Q Consensus 172 ~~~~~~~~g~~~~~~~~-----------~~C~~C~k~GH~~~~C~~~~~ 209 (220)
.||.|+..||.+++|+. ..||.|++.||++++||.+..
T Consensus 3 ~Cf~Cg~~GH~a~~C~~~~~~~~~~~~~~~C~~Cg~~GH~ar~C~~~~~ 51 (60)
T 1cl4_A 3 SCFKCGKKGHFAKNCHEHAHNNAEPKVPGLCPRCKRGKHWANECKSKTD 51 (60)
T ss_dssp --------------------------CCCSCSSCSSCSSCSTTCCCTTS
T ss_pred ccccCCCCCcCHhhCcCCCCCccccCCCcceeECCCCCCccCcCCCccc
Confidence 59999999999998865 479999999999999998864
No 10
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=98.64 E-value=1.9e-08 Score=54.65 Aligned_cols=27 Identities=37% Similarity=0.997 Sum_probs=22.0
Q ss_pred cCccccccccccccccCCCCCCCCCcc
Q 045690 187 AKKFCNYCKKPGHIIKECPTRPQNCQA 213 (220)
Q Consensus 187 ~~~~C~~C~k~GH~~~~C~~~~~~~~~ 213 (220)
....||+||+.|||+++||.+......
T Consensus 9 ~~~~C~~Cgk~GH~ardCP~~~~~~r~ 35 (40)
T 1a6b_B 9 DRDQCAYCKEKGHWAKDCPKKPRGPRG 35 (40)
T ss_dssp CSSSCSSSCCTTCCTTSCSSSCCCTTC
T ss_pred CCCeeeECCCCCcchhhCcCCcccCCC
Confidence 345799999999999999998765443
No 11
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=98.55 E-value=5.3e-08 Score=62.12 Aligned_cols=37 Identities=14% Similarity=0.329 Sum_probs=21.0
Q ss_pred ccccCCCccccccccC----ccccccccccccccCCCCCCC
Q 045690 173 CFSCKEYRHIIVNCAK----KFCNYCKKPGHIIKECPTRPQ 209 (220)
Q Consensus 173 ~~~~~~~g~~~~~~~~----~~C~~C~k~GH~~~~C~~~~~ 209 (220)
|+.|+..||.++.|.. ..||+||+.||+.++||....
T Consensus 27 cY~c~~~gh~~~~c~~p~~~~~CYnCG~~GH~~rdC~~~r~ 67 (83)
T 3nyb_B 27 AYILVDDNEKAKPKVLPFHTIYCYNCGGKGHFGDDCKEKRS 67 (83)
T ss_dssp CCCBC-------------CCCBCSSSSCBSSCGGGCSSCCS
T ss_pred ccccccCCcccccccCCCCCCeecccCCCCcCcccCCcccc
Confidence 4445555544443322 379999999999999998764
No 12
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=98.53 E-value=5.1e-08 Score=57.06 Aligned_cols=27 Identities=37% Similarity=0.972 Sum_probs=22.0
Q ss_pred ccCccccccccccccccCCCCCCCCCc
Q 045690 186 CAKKFCNYCKKPGHIIKECPTRPQNCQ 212 (220)
Q Consensus 186 ~~~~~C~~C~k~GH~~~~C~~~~~~~~ 212 (220)
.....||+||+.|||+++||.+.....
T Consensus 21 ~~~~~C~~Cge~GH~ardCp~~~~~~~ 47 (56)
T 1u6p_A 21 LDRDQCAYCKEKGHWAKDCPKKPRGPR 47 (56)
T ss_dssp CCTTBCSSSCCBSSCGGGCTTCCCSSC
T ss_pred CCCCcceeCCCCCcccccCcCCccccC
Confidence 344589999999999999999876543
No 13
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=98.48 E-value=4.6e-08 Score=48.21 Aligned_cols=21 Identities=33% Similarity=0.823 Sum_probs=17.5
Q ss_pred ccccccccccccccCCCCCCC
Q 045690 189 KFCNYCKKPGHIIKECPTRPQ 209 (220)
Q Consensus 189 ~~C~~C~k~GH~~~~C~~~~~ 209 (220)
..||.||+.||++++||....
T Consensus 3 ~~Cf~CG~~GH~ardC~~~~~ 23 (26)
T 1dsq_A 3 PVCFSCGKTGHIKRDCKEEXX 23 (26)
T ss_dssp CBCTTTCCBSSCTTTTTCC--
T ss_pred CeeEeCCCCCcccccCCCccc
Confidence 469999999999999998754
No 14
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=98.44 E-value=1.1e-07 Score=48.09 Aligned_cols=21 Identities=29% Similarity=0.629 Sum_probs=18.3
Q ss_pred ccccccccccccccCCCCCCC
Q 045690 189 KFCNYCKKPGHIIKECPTRPQ 209 (220)
Q Consensus 189 ~~C~~C~k~GH~~~~C~~~~~ 209 (220)
..||+|++.||++++||...+
T Consensus 7 ~~C~nCgk~GH~ar~C~~prk 27 (29)
T 1nc8_A 7 IRCWNCGKEGHSARQCRAPRR 27 (29)
T ss_dssp CBCTTTSCBSSCGGGCCSSSS
T ss_pred CEEEECCccccCHhHCccccc
Confidence 579999999999999987643
No 15
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.09 E-value=9.6e-07 Score=51.42 Aligned_cols=20 Identities=55% Similarity=1.070 Sum_probs=17.4
Q ss_pred CccccccccccccccCCCCC
Q 045690 188 KKFCNYCKKPGHIIKECPTR 207 (220)
Q Consensus 188 ~~~C~~C~k~GH~~~~C~~~ 207 (220)
...||.||+.|||+++||..
T Consensus 7 ~~~C~kCGk~GH~~k~Cp~~ 26 (55)
T 2ysa_A 7 GYTCFRCGKPGHYIKNCPTN 26 (55)
T ss_dssp SCCCTTTCCTTSCGGGCSGG
T ss_pred CCccccCCCcCcccccCCCC
Confidence 34799999999999999954
No 16
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=98.02 E-value=2.5e-06 Score=59.05 Aligned_cols=36 Identities=31% Similarity=0.762 Sum_probs=23.0
Q ss_pred cccccCCC-ccccccccCc-cccccccccccccCCCCC
Q 045690 172 QCFSCKEY-RHIIVNCAKK-FCNYCKKPGHIIKECPTR 207 (220)
Q Consensus 172 ~~~~~~~~-g~~~~~~~~~-~C~~C~k~GH~~~~C~~~ 207 (220)
.|+.|+.. ||.++.|+.. .||.|++.||++++||..
T Consensus 24 ~C~~Cg~~~gH~~~~C~~~~~C~~Cg~~GH~~~~C~~~ 61 (124)
T 2lli_A 24 ICSYCGATDDHYSRHCPKAIQCSKCDEVGHYRSQCPHK 61 (124)
T ss_dssp CCTTTCCTTTCCTTTGGGSSCSSSSSCSSSSTTTSCCC
T ss_pred cCcCCCCcCCccCcccCCcccccccCCCCCccccCcCc
Confidence 46666665 6666666553 566666677777777654
No 17
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=97.87 E-value=8.8e-06 Score=56.28 Aligned_cols=38 Identities=32% Similarity=0.709 Sum_probs=34.4
Q ss_pred ccccccCCCccccccccC----ccccccccccccccCCCCCC
Q 045690 171 VQCFSCKEYRHIIVNCAK----KFCNYCKKPGHIIKECPTRP 208 (220)
Q Consensus 171 ~~~~~~~~~g~~~~~~~~----~~C~~C~k~GH~~~~C~~~~ 208 (220)
..|+.|+..||.++.|+. ..||.|++.||++++||...
T Consensus 43 ~~C~~Cg~~GH~~~~C~~~~~~~~C~~Cg~~GH~~~~Cp~~~ 84 (124)
T 2lli_A 43 IQCSKCDEVGHYRSQCPHKWKKVQCTLCKSKKHSKERCPSIW 84 (124)
T ss_dssp SCSSSSSCSSSSTTTSCCCCCCCSSSSSCSSCCCTTTCCCST
T ss_pred ccccccCCCCCccccCcCcccCccCCCCCcCCcchhhCCCcc
Confidence 479999999999999987 48999999999999999864
No 18
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=97.62 E-value=1.6e-05 Score=49.49 Aligned_cols=21 Identities=29% Similarity=0.479 Sum_probs=18.0
Q ss_pred cCccccccccccccccCCCCC
Q 045690 187 AKKFCNYCKKPGHIIKECPTR 207 (220)
Q Consensus 187 ~~~~C~~C~k~GH~~~~C~~~ 207 (220)
+...||+|++.||++++|+..
T Consensus 23 r~~~C~~Cg~~GH~a~~C~~~ 43 (74)
T 2li8_A 23 KGDRCYNCGGLDHHAKECKLP 43 (74)
T ss_dssp TTSCCTTTCCSSSCTTTCSSC
T ss_pred CCCcccccCCcCcCcccCCCC
Confidence 335799999999999999963
No 19
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=97.55 E-value=3.8e-05 Score=44.98 Aligned_cols=24 Identities=33% Similarity=0.574 Sum_probs=19.8
Q ss_pred ccccCccccccccccccccCCCCC
Q 045690 184 VNCAKKFCNYCKKPGHIIKECPTR 207 (220)
Q Consensus 184 ~~~~~~~C~~C~k~GH~~~~C~~~ 207 (220)
...+...||.|++.||++++||..
T Consensus 8 g~~~~~~C~~Cg~~GH~a~~C~~~ 31 (55)
T 1a1t_A 8 NQRKTVKCFNCGKEGHIAKNCRAP 31 (55)
T ss_dssp GGGGTCBCTTTCCBSSCGGGCSSC
T ss_pred CCCCCcceeeeCCCCcChhhcCCC
Confidence 334456899999999999999875
No 20
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=97.48 E-value=5.2e-05 Score=43.22 Aligned_cols=20 Identities=30% Similarity=0.622 Sum_probs=18.0
Q ss_pred CccccccccccccccCCCCC
Q 045690 188 KKFCNYCKKPGHIIKECPTR 207 (220)
Q Consensus 188 ~~~C~~C~k~GH~~~~C~~~ 207 (220)
...||.|++.||++++||..
T Consensus 6 ~~~C~~Cg~~GH~a~~C~~~ 25 (49)
T 2ec7_A 6 VIRCWNCGKEGHSARQCRAP 25 (49)
T ss_dssp CCBCTTTCCBTCCTTTCCCS
T ss_pred cCeeeecCCCCcChhhCcCC
Confidence 45799999999999999985
No 21
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=97.42 E-value=5e-05 Score=41.05 Aligned_cols=18 Identities=39% Similarity=0.881 Sum_probs=16.7
Q ss_pred cccccccccccccCCCCC
Q 045690 190 FCNYCKKPGHIIKECPTR 207 (220)
Q Consensus 190 ~C~~C~k~GH~~~~C~~~ 207 (220)
.||+|++.||++++||..
T Consensus 2 ~C~~Cg~~GH~a~~C~~~ 19 (39)
T 2a51_A 2 TCFNCGKPGHTARMCRQP 19 (39)
T ss_dssp BCTTTCCBSSCTTTCCSC
T ss_pred eeeccCCCCcccccCCCC
Confidence 599999999999999975
No 22
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=97.39 E-value=5.8e-05 Score=40.29 Aligned_cols=18 Identities=39% Similarity=0.988 Sum_probs=16.6
Q ss_pred cccccccccccccCCCCC
Q 045690 190 FCNYCKKPGHIIKECPTR 207 (220)
Q Consensus 190 ~C~~C~k~GH~~~~C~~~ 207 (220)
.||.|++.||++++||..
T Consensus 2 ~C~~Cg~~GH~~~~C~~~ 19 (37)
T 2bl6_A 2 TCYNCGKPGHLSSQCRAP 19 (37)
T ss_dssp CBSSSCCSSCCTTTSSCB
T ss_pred cccccCCCCcchhhCcCc
Confidence 599999999999999974
No 23
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=97.06 E-value=0.0002 Score=42.74 Aligned_cols=21 Identities=33% Similarity=0.967 Sum_probs=18.4
Q ss_pred ccccccccccccccCCCCCCC
Q 045690 189 KFCNYCKKPGHIIKECPTRPQ 209 (220)
Q Consensus 189 ~~C~~C~k~GH~~~~C~~~~~ 209 (220)
..||.|++.||++++||....
T Consensus 5 ~~C~~Cg~~GH~a~~C~~~~~ 25 (61)
T 2ihx_A 5 GLCYTCGSPGHYQAQCPKKRK 25 (61)
T ss_dssp TBCSSSCCBTCCGGGCTTTTS
T ss_pred CcccccCCCCeehhhCcCCcC
Confidence 469999999999999998643
No 24
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=97.01 E-value=0.0001 Score=43.89 Aligned_cols=19 Identities=37% Similarity=0.782 Sum_probs=0.0
Q ss_pred cccccccccccccCCCCCC
Q 045690 190 FCNYCKKPGHIIKECPTRP 208 (220)
Q Consensus 190 ~C~~C~k~GH~~~~C~~~~ 208 (220)
.||.|++.||++++||...
T Consensus 3 ~Cf~Cg~~GH~a~~C~~~~ 21 (60)
T 1cl4_A 3 SCFKCGKKGHFAKNCHEHA 21 (60)
T ss_dssp -------------------
T ss_pred ccccCCCCCcCHhhCcCCC
Confidence 5999999999999999864
No 25
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.83 E-value=0.00036 Score=41.93 Aligned_cols=19 Identities=32% Similarity=0.555 Sum_probs=17.2
Q ss_pred ccccccccccccccCCCCC
Q 045690 189 KFCNYCKKPGHIIKECPTR 207 (220)
Q Consensus 189 ~~C~~C~k~GH~~~~C~~~ 207 (220)
..||.|++.||++++||..
T Consensus 8 ~~C~~Cg~~GH~a~~C~~~ 26 (63)
T 2cqf_A 8 DRCYNCGGLDHHAKECKLP 26 (63)
T ss_dssp CCCSSSCCSSSCTTTCCSC
T ss_pred CcccccCCCCcChhhCCCC
Confidence 5799999999999999964
No 26
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=96.77 E-value=0.00076 Score=47.83 Aligned_cols=21 Identities=33% Similarity=0.605 Sum_probs=18.3
Q ss_pred CccccccccccccccCCCCCC
Q 045690 188 KKFCNYCKKPGHIIKECPTRP 208 (220)
Q Consensus 188 ~~~C~~C~k~GH~~~~C~~~~ 208 (220)
...||+|++.||++++||..+
T Consensus 97 ~~~C~~Cg~~GH~a~~C~~~~ 117 (148)
T 3ts2_A 97 GDRCYNCGGLDHHAKECKLPP 117 (148)
T ss_dssp SCCCTTTCCSSCCGGGCCSCC
T ss_pred CCcccEeCCccchhhhCCCCC
Confidence 457999999999999999743
No 27
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=96.25 E-value=0.0011 Score=42.09 Aligned_cols=38 Identities=21% Similarity=0.232 Sum_probs=22.9
Q ss_pred CccccccCCCccccccccCc-cccccccccccccCCCCC
Q 045690 170 QVQCFSCKEYRHIIVNCAKK-FCNYCKKPGHIIKECPTR 207 (220)
Q Consensus 170 ~~~~~~~~~~g~~~~~~~~~-~C~~C~k~GH~~~~C~~~ 207 (220)
...|+.|+..||.++.|+.. .||.|+..||++++|+..
T Consensus 5 ~~~C~~Cg~~GH~~~~Cp~~~rcY~c~~~gh~~~~c~~p 43 (83)
T 3nyb_B 5 KVQCTLCKSKKHSKERCPSIWRAYILVDDNEKAKPKVLP 43 (83)
T ss_dssp --CCSSSCCSSSCGGGCGGGTCCCCBC------------
T ss_pred cCCCCCCCCCCCccccCCCcccccccccCCcccccccCC
Confidence 45799999999999999987 899999999999999754
No 28
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=95.16 E-value=0.014 Score=31.30 Aligned_cols=24 Identities=38% Similarity=0.682 Sum_probs=19.9
Q ss_pred CCCCCccccccCCCccccccccCc
Q 045690 166 RDMRQVQCFSCKEYRHIIVNCAKK 189 (220)
Q Consensus 166 ~~~~~~~~~~~~~~g~~~~~~~~~ 189 (220)
.......||.|+..||++++|+.+
T Consensus 6 ~~~~~~~C~~Cgk~GH~ardCP~~ 29 (40)
T 1a6b_B 6 SQLDRDQCAYCKEKGHWAKDCPKK 29 (40)
T ss_dssp CSCCSSSCSSSCCTTCCTTSCSSS
T ss_pred CCCCCCeeeECCCCCcchhhCcCC
Confidence 444566899999999999999875
No 29
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=94.76 E-value=0.015 Score=28.01 Aligned_cols=19 Identities=37% Similarity=0.837 Sum_probs=16.7
Q ss_pred ccccccCCCccccccccCc
Q 045690 171 VQCFSCKEYRHIIVNCAKK 189 (220)
Q Consensus 171 ~~~~~~~~~g~~~~~~~~~ 189 (220)
..||.|+..||.+++|+.+
T Consensus 3 ~~Cf~CG~~GH~ardC~~~ 21 (26)
T 1dsq_A 3 PVCFSCGKTGHIKRDCKEE 21 (26)
T ss_dssp CBCTTTCCBSSCTTTTTCC
T ss_pred CeeEeCCCCCcccccCCCc
Confidence 4699999999999998764
No 30
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=94.49 E-value=0.027 Score=32.61 Aligned_cols=24 Identities=38% Similarity=0.682 Sum_probs=19.7
Q ss_pred CCCCCccccccCCCccccccccCc
Q 045690 166 RDMRQVQCFSCKEYRHIIVNCAKK 189 (220)
Q Consensus 166 ~~~~~~~~~~~~~~g~~~~~~~~~ 189 (220)
.......||.|+..||++++|+.+
T Consensus 19 ~~~~~~~C~~Cge~GH~ardCp~~ 42 (56)
T 1u6p_A 19 SQLDRDQCAYCKEKGHWAKDCPKK 42 (56)
T ss_dssp TTCCTTBCSSSCCBSSCGGGCTTC
T ss_pred CCCCCCcceeCCCCCcccccCcCC
Confidence 344456799999999999999875
No 31
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=93.33 E-value=0.061 Score=26.54 Aligned_cols=20 Identities=20% Similarity=0.650 Sum_probs=17.0
Q ss_pred CccccccCCCccccccccCc
Q 045690 170 QVQCFSCKEYRHIIVNCAKK 189 (220)
Q Consensus 170 ~~~~~~~~~~g~~~~~~~~~ 189 (220)
...||.|+..||.+++|+.+
T Consensus 6 ~~~C~nCgk~GH~ar~C~~p 25 (29)
T 1nc8_A 6 VIRCWNCGKEGHSARQCRAP 25 (29)
T ss_dssp CCBCTTTSCBSSCGGGCCSS
T ss_pred CCEEEECCccccCHhHCccc
Confidence 45799999999999988754
No 32
>2hqh_E Restin; beta/BETA structure, zinc finger motif, structural protein, binding; 1.80A {Homo sapiens}
Probab=91.81 E-value=0.051 Score=25.72 Aligned_cols=19 Identities=26% Similarity=0.842 Sum_probs=16.0
Q ss_pred CccccccccccccccCCCC
Q 045690 188 KKFCNYCKKPGHIIKECPT 206 (220)
Q Consensus 188 ~~~C~~C~k~GH~~~~C~~ 206 (220)
.+-|-.|.-.||+..+|..
T Consensus 3 RpYCe~CE~FGH~t~~C~d 21 (26)
T 2hqh_E 3 RPYCEICEMFGHWATNCND 21 (26)
T ss_dssp -CEETTTTEESSCGGGCCT
T ss_pred CccchHHHHhCcccccCCc
Confidence 3469999999999999965
No 33
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.79 E-value=0.15 Score=29.36 Aligned_cols=20 Identities=35% Similarity=0.796 Sum_probs=17.1
Q ss_pred CccccccCCCccccccccCc
Q 045690 170 QVQCFSCKEYRHIIVNCAKK 189 (220)
Q Consensus 170 ~~~~~~~~~~g~~~~~~~~~ 189 (220)
...||+|++.||+.+.|+..
T Consensus 7 ~~~C~kCGk~GH~~k~Cp~~ 26 (55)
T 2ysa_A 7 GYTCFRCGKPGHYIKNCPTN 26 (55)
T ss_dssp SCCCTTTCCTTSCGGGCSGG
T ss_pred CCccccCCCcCcccccCCCC
Confidence 44799999999999999843
No 34
>2pzo_E CAP-Gly domain-containing linker protein 1; structural protein microtubule binding, dynactin, cytoskeleton associated protein, P150glued; 2.60A {Homo sapiens} PDB: 3e2u_E
Probab=85.71 E-value=0.24 Score=26.23 Aligned_cols=22 Identities=23% Similarity=0.688 Sum_probs=16.4
Q ss_pred cccCccccccccccccccCCCC
Q 045690 185 NCAKKFCNYCKKPGHIIKECPT 206 (220)
Q Consensus 185 ~~~~~~C~~C~k~GH~~~~C~~ 206 (220)
.-..+-|-.|.-.||+..+|..
T Consensus 17 ~~eRpYCd~CEvFGH~t~~Cnd 38 (42)
T 2pzo_E 17 GEERPYCEICEMFGHWATNCND 38 (42)
T ss_dssp ----CEETTTTEESSCGGGCCT
T ss_pred ccCCcccccccccCcccccCCc
Confidence 3445679999999999999964
No 35
>3alr_A Nanos protein; zinc-finger, translational repression, RNA, 3'-UTR, metal BI protein; 2.10A {Danio rerio}
Probab=79.93 E-value=0.72 Score=29.86 Aligned_cols=20 Identities=30% Similarity=0.723 Sum_probs=18.0
Q ss_pred ccccccccc---ccccCCCCCCC
Q 045690 190 FCNYCKKPG---HIIKECPTRPQ 209 (220)
Q Consensus 190 ~C~~C~k~G---H~~~~C~~~~~ 209 (220)
.|..||-.| |..+.||..++
T Consensus 73 ~CpiCGATGd~AHT~kYCP~~~~ 95 (106)
T 3alr_A 73 KCPLCGATGAKAHTKRFCPMVDK 95 (106)
T ss_dssp CCTTTCCCGGGCCCGGGCTTCGG
T ss_pred cCCCCCCcCCcccceecCCCCCC
Confidence 899999999 99999998764
No 36
>3e2u_E CAP-Gly domain-containing linker protein 1; structural protein microtubule binding, dynactin, cytoskelet associated protein, P150glued; 2.60A {Homo sapiens}
Probab=78.41 E-value=0.66 Score=24.69 Aligned_cols=19 Identities=26% Similarity=0.842 Sum_probs=16.8
Q ss_pred CccccccccccccccCCCC
Q 045690 188 KKFCNYCKKPGHIIKECPT 206 (220)
Q Consensus 188 ~~~C~~C~k~GH~~~~C~~ 206 (220)
.+-|-.|.-.||+..+|..
T Consensus 20 RpYCe~CEVFGH~t~eC~d 38 (42)
T 3e2u_E 20 RPYCEICEMFGHWATNCND 38 (42)
T ss_dssp CCEETTTTEESSCGGGCCT
T ss_pred CcccccceecccccccCCc
Confidence 4569999999999999975
No 37
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=77.92 E-value=18 Score=27.00 Aligned_cols=58 Identities=12% Similarity=0.104 Sum_probs=36.8
Q ss_pred HHhccC-CCccHHHHHHHHHHHhccCCchhHhhHHHHHHHhhcC-CCcH------HHHHHHHHHHH
Q 045690 12 LVLNLK-PYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQG-DLSI------QNYLSGIQNLW 69 (220)
Q Consensus 12 ~~~~i~-~~~ta~~~W~~L~~~f~~~~~~~~~~l~~~~~~~~~~-~~sv------~ey~~~~~~l~ 69 (220)
|.+.|. ....++++..+|+.+....+..........+..+.+. |..+ .+|+++|..|+
T Consensus 32 icD~I~~~~~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~ 97 (226)
T 3zyq_A 32 ICDLIRQGDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLL 97 (226)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHH
T ss_pred HHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHh
Confidence 333443 3567999999999999966655555556667777664 4433 35555555544
No 38
>1hbw_A Regulatory protein GAL4; transcriptional activator, galactose and melibiose metabolism, dimerization domain, coiled-coil dimeric; NMR {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=63.62 E-value=3.4 Score=23.34 Aligned_cols=44 Identities=14% Similarity=0.233 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHhcccccCCCcccHHHHHHHHHHHHHHHHHhhc
Q 045690 61 YLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKL 104 (220)
Q Consensus 61 y~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~gL 104 (220)
|++++++-+.+|..++..-+|.+++..+...++...+..+|.+|
T Consensus 4 HLTeVEnRl~qLE~ll~~lfP~~d~D~ll~~~~l~~ir~~L~~~ 47 (57)
T 1hbw_A 4 HLTEVESRLERLEQLFLLIFPREDLDMILKMDSLRDIEALLTGL 47 (57)
T ss_dssp CCHHHHHHHHHHHHHCSSSSSSSCCCHHHHHHSSHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHCCcccHHHHHcCCChHHHHHHHHHH
Confidence 55667777777777777777877776665555555555555554
No 39
>2cr7_A Paired amphipathic helix protein SIN3B; paired amphipathic helix repeat, transcriptional repressor, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rmr_A 2rms_A
Probab=56.21 E-value=18 Score=22.21 Aligned_cols=51 Identities=10% Similarity=0.162 Sum_probs=34.0
Q ss_pred CCccHHHHHHHHHHHhccCCchhHhhHHHHHHHhhcCCCcHHHHHHHHHHHH
Q 045690 18 PYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLSGIQNLW 69 (220)
Q Consensus 18 ~~~ta~~~W~~L~~~f~~~~~~~~~~l~~~~~~~~~~~~sv~ey~~~~~~l~ 69 (220)
....|....+.+|++|... ..........+...+.+..++.+-+.++..|.
T Consensus 9 ~~~dA~~yl~~VK~rF~~~-p~~Y~~FL~im~~fk~~~~~~~~v~~rV~~Lf 59 (80)
T 2cr7_A 9 HVEDALTYLDQVKIRFGSD-PATYNGFLEIMKEFKSQSIDTPGVIRRVSQLF 59 (80)
T ss_dssp CSCCSHHHHHHHHHHTSSC-HHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHG
T ss_pred CHHHHHHHHHHHHHHHccC-hHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 3557888899999999853 23333444444444556778888888887665
No 40
>2czy_A Paired amphipathic helix protein SIN3B; SIN3, PAH1, transcriptional repressor, gene regulation; NMR {Mus musculus}
Probab=56.01 E-value=16 Score=22.26 Aligned_cols=49 Identities=10% Similarity=0.184 Sum_probs=31.9
Q ss_pred ccHHHHHHHHHHHhccCCchhHhhHHHHHHHhhcCCCcHHHHHHHHHHHH
Q 045690 20 KTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLSGIQNLW 69 (220)
Q Consensus 20 ~ta~~~W~~L~~~f~~~~~~~~~~l~~~~~~~~~~~~sv~ey~~~~~~l~ 69 (220)
..|....+.+|.+|... ..........+...+.+..++.+-+.++..|.
T Consensus 5 ~dA~~yl~~VK~~F~~~-p~~Y~~FL~im~~~k~~~~~~~~v~~rv~~Lf 53 (77)
T 2czy_A 5 EDALTYLDQVKIRFGSD-PATYNGFLEIMKEFKSQSIDTPGVIRRVSQLF 53 (77)
T ss_dssp HHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHccC-hHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 35677788888889853 23333444444444556788888888877655
No 41
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=50.58 E-value=79 Score=25.57 Aligned_cols=39 Identities=18% Similarity=0.164 Sum_probs=26.8
Q ss_pred cCCchhHhhHHHHHHHhhcCCCcHHHHHHHHHHHHHHHh
Q 045690 35 QDNTAKCFHLEYEIARYSQGDLSIQNYLSGIQNLWAKYV 73 (220)
Q Consensus 35 ~~~~~~~~~l~~~~~~~~~~~~sv~ey~~~~~~l~~~L~ 73 (220)
.....++..|+..+..+.+-..++..|+..+..++.+-.
T Consensus 63 r~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~ 101 (390)
T 1deq_A 63 QDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDF 101 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 344456777777777777777777777777777665544
No 42
>3sol_A Type II secretion pathway related protein; general secretory pathway, protein transport, pilotin; 1.90A {Escherichia coli}
Probab=44.71 E-value=35 Score=21.71 Aligned_cols=69 Identities=13% Similarity=-0.055 Sum_probs=39.2
Q ss_pred CccHHHHHHHHHHHhc-cCCchhHhhHHHHHHHhhcCCCcHHHHHHHHHHHHHHH-hcccccCCCcccHHHH
Q 045690 19 YKTAKDMWEYLKKVYN-QDNTAKCFHLEYEIARYSQGDLSIQNYLSGIQNLWAKY-VDMIYVQVPIESLADV 88 (220)
Q Consensus 19 ~~ta~~~W~~L~~~f~-~~~~~~~~~l~~~~~~~~~~~~sv~ey~~~~~~l~~~L-~~~~~~~~~~~~~~~~ 88 (220)
+.+--..-.+|+..+. .+.+......+....--.+.+.++.+|-. |..+..++ .++.+...|....+..
T Consensus 10 LA~L~A~~~yLK~~C~~~diPd~~~I~~~a~~~A~~~gWD~~~y~~-l~~~s~~~Y~~L~~d~~p~~~kC~~ 80 (94)
T 3sol_A 10 MASIVSATRYLKMRCNRSDLPDEQSILNVANRIAIGKGWQSLTQED-IRKHSDDIYVRLTRDSTPEYIKCRE 80 (94)
T ss_dssp HHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHTTCCSCCHHH-HHHHHHHHHHHHHHCCSCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHcCCChhhhHH-HHHHHHHHHHHHhccCCCcchHHHH
Confidence 3444566789999999 44433333333333333445666666655 76665555 3344666676555554
No 43
>2lh0_A Histone chaperone RTT106; chromosomal protein, nucleus, phosphoprotein, transcription, transcription regulation, transposition; NMR {Saccharomyces cerevisiae}
Probab=44.44 E-value=23 Score=21.10 Aligned_cols=32 Identities=25% Similarity=0.278 Sum_probs=21.6
Q ss_pred HHhhcchhHHHHHHhhhcCCCCCCHHHHHHHHHH
Q 045690 100 FLMKLRPEYKAARSNLMNRDLSPSLDVCFKELLR 133 (220)
Q Consensus 100 ~l~gLp~~~~~~~~~~~~~~~~~t~~e~~~~l~~ 133 (220)
||..||++++.-+.++-... |+-.+++..|-.
T Consensus 8 wL~~LP~~Lq~kV~aIV~~~--PsSl~VF~~Ly~ 39 (70)
T 2lh0_A 8 FLDELPESLSRKIGTVVRVL--PSSLEIFEELYK 39 (70)
T ss_dssp GGGGSCHHHHHHHHHHHTTC--TTHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHhC--ccHHHHHHHHHH
Confidence 89999999988888777654 343344444433
No 44
>3g2b_A Coenzyme PQQ synthesis protein D; helix-turn-helix, PQQ biosynthesis, biosynthetic protein; 1.66A {Xanthomonas campestris PV}
Probab=41.55 E-value=46 Score=21.04 Aligned_cols=32 Identities=6% Similarity=0.161 Sum_probs=26.3
Q ss_pred cccccHHHHhccCCCccHHHHHHHHHHHhccC
Q 045690 5 MGSVDQSLVLNLKPYKTAKDMWEYLKKVYNQD 36 (220)
Q Consensus 5 ~~sl~~~~~~~i~~~~ta~~~W~~L~~~f~~~ 36 (220)
++-+.-.|+..+.+..|..+|-+.|.+.|...
T Consensus 41 Ln~~a~~Iw~l~DG~rtv~eIv~~L~~~y~~~ 72 (95)
T 3g2b_A 41 LDDIALVVAQRYDGTQSLAQIAQTLAAEFDAD 72 (95)
T ss_dssp CCTHHHHHHHHCCSSSCHHHHHHHHHHHTTCC
T ss_pred cCHHHHHHHHHccCCCCHHHHHHHHHHHcCCc
Confidence 44556778889999999999999999999844
No 45
>3g1g_A GAG polyprotein, capsid protein; alpha-helical bundle, virion, viral protein, retrovirus; 2.01A {Rous sarcoma virus}
Probab=40.46 E-value=65 Score=20.05 Aligned_cols=70 Identities=14% Similarity=0.138 Sum_probs=37.1
Q ss_pred HhhcC-CCcHHHHHHHHHHHHHHHhcccccCCCcccHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhhc-CCCCCCHHHH
Q 045690 50 RYSQG-DLSIQNYLSGIQNLWAKYVDMIYVQVPIESLADVQGVHEQSKRDQFLMKLRPEYKAARSNLMN-RDLSPSLDVC 127 (220)
Q Consensus 50 ~~~~~-~~sv~ey~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~gLp~~~~~~~~~~~~-~~~~~t~~e~ 127 (220)
..+|| .|+..+|+++|..-...=. . +.+. .+.+....++..=+++ .+..+.. ..+.++.+|+
T Consensus 5 dI~QGPkEPF~dfVdRl~kal~~eq-~-----~~~v-------K~~m~~tLlvQNANpd---Ck~Il~~~~~~~~~~~e~ 68 (87)
T 3g1g_A 5 DIMQGPSESFVDFANRLIKAVEGSD-L-----PPSA-------RAPVIIDCFRQKSQPD---IQQLIRTAPSTLTTPGEI 68 (87)
T ss_dssp TCCCCTTCCHHHHHHHHHHHHHHSS-S-----CGGG-------HHHHHHHHHHHHSCHH---HHHHHHTSCTTCCSHHHH
T ss_pred ccccCCCCcHHHHHHHHHHHHHHhh-c-----hHHH-------HHHHHHHHHHHhcCHH---HHHHHHhCCCCCCChHHH
Confidence 45676 8999999999986553321 1 2221 1111111123233332 2222333 3455666999
Q ss_pred HHHHHHHH
Q 045690 128 FKELLREE 135 (220)
Q Consensus 128 ~~~l~~~e 135 (220)
+..++..+
T Consensus 69 Ik~~l~~~ 76 (87)
T 3g1g_A 69 IKYVLDRQ 76 (87)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 98888655
No 46
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=38.37 E-value=13 Score=20.83 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=16.4
Q ss_pred cccccCCCccccccccCcccccccccccc
Q 045690 172 QCFSCKEYRHIIVNCAKKFCNYCKKPGHI 200 (220)
Q Consensus 172 ~~~~~~~~g~~~~~~~~~~C~~C~k~GH~ 200 (220)
.|..|...|.... ..|..|+..|-.
T Consensus 11 ~C~~C~GsG~~i~----~~C~~C~G~G~v 35 (53)
T 3lcz_A 11 TCPNCNGSGREEP----EPCPKCLGKGVI 35 (53)
T ss_dssp ECTTTTTSCEETT----EECTTTTTSSEE
T ss_pred cCcCCcccccCCC----CcCCCCCCcEEE
Confidence 4777777776543 458888777743
No 47
>3kxe_C Antitoxin protein PARD-1; complex, TA system, protein binding; 2.60A {Caulobacter crescentus NA1000}
Probab=38.07 E-value=72 Score=19.86 Aligned_cols=33 Identities=15% Similarity=0.072 Sum_probs=26.8
Q ss_pred hhcchhHHHHHHhhhcCCCCCCHHHHHHHHHHH
Q 045690 102 MKLRPEYKAARSNLMNRDLSPSLDVCFKELLRE 134 (220)
Q Consensus 102 ~gLp~~~~~~~~~~~~~~~~~t~~e~~~~l~~~ 134 (220)
-+||+++..++..........+..|++..++..
T Consensus 8 IsL~~~l~~~i~~~V~sG~Y~s~SEviR~~lR~ 40 (88)
T 3kxe_C 8 VVLGDHFQAFIDSQVADGRYGSASEVIRAGLRL 40 (88)
T ss_dssp ECCCHHHHHHHHHHHTTTSCSSHHHHHHHHHHH
T ss_pred eecCHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 469999999999999988888888887765443
No 48
>2khf_A PLNJ; anti-microbial, bacteriocin, peptide, two-peptide, antimicrobial protein; NMR {Lactobacillus plantarum} PDB: 2khg_A
Probab=37.06 E-value=21 Score=16.10 Aligned_cols=18 Identities=22% Similarity=0.542 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHhccCCch
Q 045690 22 AKDMWEYLKKVYNQDNTA 39 (220)
Q Consensus 22 a~~~W~~L~~~f~~~~~~ 39 (220)
++.+|..|+.-|......
T Consensus 3 wknfwsslrkgfydgeag 20 (26)
T 2khf_A 3 WKNFWSSLRKGFYDGEAG 20 (26)
T ss_dssp HHHHHHHHHHHHTTTHHH
T ss_pred HHHHHHHHHhhcccchhh
Confidence 577899999988755433
No 49
>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB: 2yrf_A*
Probab=35.38 E-value=1.8e+02 Score=23.54 Aligned_cols=60 Identities=5% Similarity=-0.043 Sum_probs=41.5
Q ss_pred CCCccHHHHHHHHHHHhccCCchh-HhhHHHHHHHhhc-CCCcHHHHHHHHHHHHHHHhccc
Q 045690 17 KPYKTAKDMWEYLKKVYNQDNTAK-CFHLEYEIARYSQ-GDLSIQNYLSGIQNLWAKYVDMI 76 (220)
Q Consensus 17 ~~~~ta~~~W~~L~~~f~~~~~~~-~~~l~~~~~~~~~-~~~sv~ey~~~~~~l~~~L~~~~ 76 (220)
..+.+..++|++|+++--.+..+- +....-......+ ...++.++...++...+.|.+..
T Consensus 54 ~~~~~~~~~~~aIk~m~VrGApaIgiaaa~~l~l~~~~~~~~~~~~l~~~l~~~~~~L~~aR 115 (374)
T 2yvk_A 54 LELTTKEDVFDAIVTLKVRGAPAIGITAAFGLALAAKDIETDNVTEFRRRLEDIKQYLNSSR 115 (374)
T ss_dssp EEECSHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHTTC
T ss_pred EEeCCHHHHHHHHHhCccCCcHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhC
Confidence 357899999999999877654332 2222222233333 35689999999999999998653
No 50
>1e91_A Paired amphipathic helix protein SIN3B; eukaryotic transcriptional regulation, SIN3, PAH domains, protein-protein interactions; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1pd7_A
Probab=33.59 E-value=39 Score=20.93 Aligned_cols=49 Identities=12% Similarity=0.165 Sum_probs=27.6
Q ss_pred ccHHHHHHHHHHHhccCCchhHhhHHHHHHHhhcC----------CCcHHHHHHHHHHHH
Q 045690 20 KTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQG----------DLSIQNYLSGIQNLW 69 (220)
Q Consensus 20 ~ta~~~W~~L~~~f~~~~~~~~~~l~~~~~~~~~~----------~~sv~ey~~~~~~l~ 69 (220)
..|....+.+|++|.... .........+...+.+ +.|+.+-+.++..|.
T Consensus 8 ~~A~~yv~kVK~rF~~~p-~~Y~~FL~il~~yk~~~~d~~~~~~~~~s~~eV~~~V~~Lf 66 (85)
T 1e91_A 8 NNAISYVNKIKTRFLDHP-EIYRSFLEILHTYQKEQLHTKGRPFRGMSEEEVFTEVANLF 66 (85)
T ss_dssp HHHHHHHHHHHHHTSSCH-HHHHHHHHHHHHHHHTTCSSSCCCSSCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHccccccccccccCcHHHHHHHHHHHH
Confidence 456777888999998632 2222222222222222 257778777776554
No 51
>3tir_A ROUS sarcoma virus capsid protein P27; viral capsid protein, viral protein; 4.10A {Rous sarcoma virus} PDB: 2x8q_A
Probab=33.07 E-value=1.3e+02 Score=22.40 Aligned_cols=40 Identities=13% Similarity=0.140 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhccCCchhHhhHHHHHHHhhcC-CCcHHHHHHHHHHHHH
Q 045690 22 AKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQG-DLSIQNYLSGIQNLWA 70 (220)
Q Consensus 22 a~~~W~~L~~~f~~~~~~~~~~l~~~~~~~~~~-~~sv~ey~~~~~~l~~ 70 (220)
|-..|..|-.++.... -|....|| .|+..+|+.+|..-..
T Consensus 136 ai~aw~~l~~~~~~~~---------~~~~I~QGp~Epf~dfv~rl~~a~~ 176 (226)
T 3tir_A 136 ALQAFREVARLAEPAG---------PWADIMQGPSESFVDFANRLIKAVE 176 (226)
T ss_dssp HHHHHHHHHHHC-------------CGGGCCCCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHhccccCCCCc---------chhHhhcCCCCcHHHHHHHHHHHHH
Confidence 4456666666555332 13345776 8999999999986553
No 52
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=30.02 E-value=30 Score=18.85 Aligned_cols=10 Identities=30% Similarity=0.700 Sum_probs=7.3
Q ss_pred cCcccccccc
Q 045690 187 AKKFCNYCKK 196 (220)
Q Consensus 187 ~~~~C~~C~k 196 (220)
|..+|.+||-
T Consensus 22 P~IrCpyCGy 31 (48)
T 4ayb_P 22 PGVRCPYCGY 31 (48)
T ss_dssp SSSCCTTTCC
T ss_pred CCcccCccCc
Confidence 4458999985
No 53
>4a56_A PULS, pullulanase secretion protein PULS; protein transport, T2SS; 1.24A {Klebsiella oxytoca}
Probab=30.00 E-value=76 Score=20.08 Aligned_cols=70 Identities=13% Similarity=-0.024 Sum_probs=38.5
Q ss_pred CCccHHHHHHHHHHHhc-cCCchhHhhHHHHHHHhhcCCCcHHHHHHHHHHHHHHH-hcccccCCCcccHHHH
Q 045690 18 PYKTAKDMWEYLKKVYN-QDNTAKCFHLEYEIARYSQGDLSIQNYLSGIQNLWAKY-VDMIYVQVPIESLADV 88 (220)
Q Consensus 18 ~~~ta~~~W~~L~~~f~-~~~~~~~~~l~~~~~~~~~~~~sv~ey~~~~~~l~~~L-~~~~~~~~~~~~~~~~ 88 (220)
++.+--..-.+|+..+. .+.+......+..+.--.+.+.++.+|-. |..+..++ .++.+...|....+..
T Consensus 9 qLa~L~A~~~yLK~~C~~~diPd~~~I~~~a~~~A~~~~Wd~~~y~~-l~~~s~~~Y~~L~~d~~~~~~kC~~ 80 (93)
T 4a56_A 9 QLASVAAGARYLKNKCNRSDLPADEAINRAAINVGKKRGWANIDANL-LSQRSAQLYQQLQQDSTPEATKCSQ 80 (93)
T ss_dssp HHHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHTCCCCCHHH-HHHHHHHHHHHHHHCCSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHcCCChhhHHH-HHHHHHHHHHHHhccCCCcchHHHH
Confidence 34444566789999999 44433332333333333334555556665 77765555 3344666676555554
No 54
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=29.15 E-value=16 Score=21.89 Aligned_cols=15 Identities=7% Similarity=0.105 Sum_probs=11.8
Q ss_pred HHHhhcchhHHHHHH
Q 045690 99 QFLMKLRPEYKAARS 113 (220)
Q Consensus 99 ~~l~gLp~~~~~~~~ 113 (220)
.+..+||.+|+.+-.
T Consensus 28 DLaEdLP~~w~~i~~ 42 (71)
T 2js5_A 28 DLAEDLPTGWNRIME 42 (71)
T ss_dssp HHHHSTTTSGGGHHH
T ss_pred HHhccchhhHHHHHH
Confidence 388899999987743
No 55
>2w9y_A CE-FAR-7, fatty acid/retinol binding protein protein 7, isoform A, confirmed by transcript...; lipid transport; HET: CSX; 1.80A {Caenorhabditis elegans}
Probab=28.69 E-value=1.4e+02 Score=20.40 Aligned_cols=7 Identities=0% Similarity=-0.572 Sum_probs=3.0
Q ss_pred CCHHHHH
Q 045690 122 PSLDVCF 128 (220)
Q Consensus 122 ~t~~e~~ 128 (220)
++++++.
T Consensus 108 ~~~~~lK 114 (140)
T 2w9y_A 108 IDDADAK 114 (140)
T ss_dssp CCTHHHH
T ss_pred CCHHHHH
Confidence 4444443
No 56
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=28.23 E-value=88 Score=21.01 Aligned_cols=33 Identities=12% Similarity=0.263 Sum_probs=22.3
Q ss_pred CCccHHHHHHHHHHHhccCCchhHhhHHHHHHH
Q 045690 18 PYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIAR 50 (220)
Q Consensus 18 ~~~ta~~~W~~L~~~f~~~~~~~~~~l~~~~~~ 50 (220)
..-||.++++.|++.+..-+.+.+|+....|..
T Consensus 28 ~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e 60 (139)
T 3mwm_A 28 EFRSAQELHDMLKHKGDAVGLTTVYRTLQSLAD 60 (139)
T ss_dssp SCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 467899999999887766555555554444443
No 57
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.07 E-value=26 Score=19.18 Aligned_cols=24 Identities=29% Similarity=0.681 Sum_probs=15.9
Q ss_pred Ccccccccc--------ccccccCCCCCCCCC
Q 045690 188 KKFCNYCKK--------PGHIIKECPTRPQNC 211 (220)
Q Consensus 188 ~~~C~~C~k--------~GH~~~~C~~~~~~~ 211 (220)
...|..|+. .+|..-.||....-.
T Consensus 12 ~~~CPrCn~~f~~~~sLr~HmkycCp~~v~~~ 43 (49)
T 2e72_A 12 RKICPRCNAQFRVTEALRGHMCYCCPEMVEYQ 43 (49)
T ss_dssp CCCCTTTCCCCSSHHHHHHHHHHHCTTTCCCC
T ss_pred ceeCCcccccccchHHHHhhhhhcCcchhhhh
Confidence 345667754 478888888876543
No 58
>3aa0_C 21MER peptide from leucine-rich repeat-containing 16A; actin capping protein, barbed END regulation, carmil family conformational change; 1.70A {Mus musculus}
Probab=27.96 E-value=22 Score=16.09 Aligned_cols=23 Identities=30% Similarity=0.325 Sum_probs=16.5
Q ss_pred ccccccCCCCCCCCCcccccccc
Q 045690 197 PGHIIKECPTRPQNCQASQAVVA 219 (220)
Q Consensus 197 ~GH~~~~C~~~~~~~~~~~~~~a 219 (220)
..|+.+-=|++.++.|.+++.|.
T Consensus 2 lehftklrpkr~kkqqps~~tv~ 24 (26)
T 3aa0_C 2 LEHFTKLRPKRNKKQQPTQAXXX 24 (26)
T ss_pred cchhhhcCcchhhccCCcccccc
Confidence 35777777888777777776653
No 59
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=27.83 E-value=37 Score=15.92 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=12.7
Q ss_pred HHHHHHHhccCCchhHhhHHHHHHHh
Q 045690 26 WEYLKKVYNQDNTAKCFHLEYEIARY 51 (220)
Q Consensus 26 W~~L~~~f~~~~~~~~~~l~~~~~~~ 51 (220)
|++|+..+..-. +.+..+.+.+..+
T Consensus 3 wealekkcaale-sklqalekkleal 27 (31)
T 3ljm_A 3 WEALEKKCAALE-SKLQALEKKLEAL 27 (31)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 777777654211 2344555554443
No 60
>3a11_A Translation initiation factor EIF-2B, delta subun; isomerase, hexamer, rossmann fold; 2.50A {Thermococcus kodakaraensis} PDB: 3a9c_A* 3vm6_A*
Probab=27.60 E-value=2.3e+02 Score=22.44 Aligned_cols=63 Identities=5% Similarity=-0.044 Sum_probs=41.6
Q ss_pred cCCCccHHHHHHHHHHHhccCCchhH-hhHHHHHHHhhc-CCCcHHHHHHHHHHHHHHHhccccc
Q 045690 16 LKPYKTAKDMWEYLKKVYNQDNTAKC-FHLEYEIARYSQ-GDLSIQNYLSGIQNLWAKYVDMIYV 78 (220)
Q Consensus 16 i~~~~ta~~~W~~L~~~f~~~~~~~~-~~l~~~~~~~~~-~~~sv~ey~~~~~~l~~~L~~~~~~ 78 (220)
+..+.+..++|+.|+++--.+..+.- ..+.-......+ ...++.++...++...+.|.+..+.
T Consensus 17 ~~~~~~~~~~~~aI~~m~VrGApai~iaaa~~l~~~~~~~~~~~~~~l~~~l~~~~~~L~~aRPt 81 (338)
T 3a11_A 17 MAVVKEVLEIAEKIKNMEIRGAGKIARSAAYALQLQAEKSKATNVDEFWKEMKQAAKILFETRPT 81 (338)
T ss_dssp --CCSHHHHHHHHHHTCSSCSHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHHHHHHHHTTCTT
T ss_pred EEEeCCHHHHHHHHHhCcEeCcHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 45678999999999998776543432 222222222222 3468999999999999999866443
No 61
>2odb_B Serine/threonine-protein kinase PAK 6; small GTPase, CRIB, protein-protein complex, structu genomics, structural genomics consortium, SGC; HET: GCP; 2.40A {Homo sapiens}
Probab=27.34 E-value=17 Score=18.33 Aligned_cols=12 Identities=17% Similarity=0.448 Sum_probs=9.6
Q ss_pred HHhhcchhHHHH
Q 045690 100 FLMKLRPEYKAA 111 (220)
Q Consensus 100 ~l~gLp~~~~~~ 111 (220)
++.|||++|..+
T Consensus 22 ~f~Glp~eW~~l 33 (35)
T 2odb_B 22 KFVGLPPQWQNI 33 (35)
T ss_dssp EEESCCHHHHHH
T ss_pred cccCCCHHHHHH
Confidence 357999999876
No 62
>1r5q_A KAI A, circadian oscillation regulator; four-helix-bundle, gene regulation; 2.00A {Nostoc SP} SCOP: a.186.1.1
Probab=26.49 E-value=74 Score=20.17 Aligned_cols=31 Identities=16% Similarity=0.352 Sum_probs=19.0
Q ss_pred HHhhcchhHHHHHHhhhcCCCCCC--HHHHHHH
Q 045690 100 FLMKLRPEYKAARSNLMNRDLSPS--LDVCFKE 130 (220)
Q Consensus 100 ~l~gLp~~~~~~~~~~~~~~~~~t--~~e~~~~ 130 (220)
+|..|..+|..++-++........ ++++++.
T Consensus 10 ll~~L~~~YR~ill~YF~~d~~~n~~Id~fVn~ 42 (102)
T 1r5q_A 10 LLQQLKSDYRQILLSYFTTDKALKEKIDKFINA 42 (102)
T ss_dssp HHHHHHHHHHHHHHHTTSCC--CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 778888888888777776554332 4444443
No 63
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=25.19 E-value=31 Score=19.25 Aligned_cols=26 Identities=27% Similarity=0.566 Sum_probs=18.0
Q ss_pred cccccCCCccccccccCccccccccccccc
Q 045690 172 QCFSCKEYRHIIVNCAKKFCNYCKKPGHII 201 (220)
Q Consensus 172 ~~~~~~~~g~~~~~~~~~~C~~C~k~GH~~ 201 (220)
.|..|+..|... ...|..|+-.|...
T Consensus 11 ~C~~C~GsG~~~----~~~C~~C~G~G~v~ 36 (53)
T 2bx9_A 11 ACPKCERAGEIE----GTPCPACSGKGVIL 36 (53)
T ss_dssp ECTTTTTSSEET----TEECTTTTTSSEEE
T ss_pred cCCCCcceeccC----CCCCccCCCCccEE
Confidence 577777777653 25688888877654
No 64
>2l8e_A Polyhomeotic-like protein 1; DNA binding protein; NMR {Homo sapiens}
Probab=24.74 E-value=22 Score=19.58 Aligned_cols=12 Identities=33% Similarity=0.664 Sum_probs=9.3
Q ss_pred cccccccccccc
Q 045690 189 KFCNYCKKPGHI 200 (220)
Q Consensus 189 ~~C~~C~k~GH~ 200 (220)
.+|-+||+.+..
T Consensus 19 ~~C~~CG~~i~~ 30 (49)
T 2l8e_A 19 LKCEYCGKYAPA 30 (49)
T ss_dssp EECTTTCCEEEG
T ss_pred CcChhccCcccc
Confidence 469999987765
No 65
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=24.50 E-value=58 Score=24.57 Aligned_cols=38 Identities=26% Similarity=0.553 Sum_probs=20.6
Q ss_pred ccccccCCCcccccc---c-----cCccccccccccccc---cCCCCCC
Q 045690 171 VQCFSCKEYRHIIVN---C-----AKKFCNYCKKPGHII---KECPTRP 208 (220)
Q Consensus 171 ~~~~~~~~~g~~~~~---~-----~~~~C~~C~k~GH~~---~~C~~~~ 208 (220)
..|..|...|..... . ....|..|+-.|.+. ..|+.-.
T Consensus 55 ~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~~~~~C~~C~ 103 (248)
T 1nlt_A 55 KKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDPKDRCKSCN 103 (248)
T ss_dssp CCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCCTTSBCSSST
T ss_pred ccCCCCCCCcEEEEEEecCceEEEEEEcCCCCCCcCEEeccCCCCcccC
Confidence 356666666643211 1 123677777777554 5565544
No 66
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=24.45 E-value=95 Score=20.52 Aligned_cols=33 Identities=9% Similarity=0.241 Sum_probs=21.5
Q ss_pred CCCccHHHHHHHHHHHhccCCchhHhhHHHHHH
Q 045690 17 KPYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIA 49 (220)
Q Consensus 17 ~~~~ta~~~W~~L~~~f~~~~~~~~~~l~~~~~ 49 (220)
...-||.++++.|++.+..-+.+.+|+....|.
T Consensus 24 ~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~ 56 (131)
T 2o03_A 24 DDFRSAQELHDELRRRGENIGLTTVYRTLQSMA 56 (131)
T ss_dssp CSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHH
Confidence 456799999999988766555445544444443
No 67
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=24.25 E-value=1.3e+02 Score=20.46 Aligned_cols=26 Identities=0% Similarity=0.133 Sum_probs=13.7
Q ss_pred CCccHHHHHHHHHHHhccCCchhHhh
Q 045690 18 PYKTAKDMWEYLKKVYNQDNTAKCFH 43 (220)
Q Consensus 18 ~~~ta~~~W~~L~~~f~~~~~~~~~~ 43 (220)
..-||.++++.|++.+..-+.+.+|+
T Consensus 41 ~~~sa~ei~~~l~~~~~~is~aTVYR 66 (150)
T 2xig_A 41 THLSPEEITHSIRQKDKNTSISSVYR 66 (150)
T ss_dssp SCBCHHHHHHHHHHHSTTCCHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCCHhhHHH
Confidence 34566666666666554444333333
No 68
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=24.08 E-value=1.5e+02 Score=20.55 Aligned_cols=26 Identities=12% Similarity=0.132 Sum_probs=13.8
Q ss_pred CCccHHHHHHHHHHH--hccCCchhHhh
Q 045690 18 PYKTAKDMWEYLKKV--YNQDNTAKCFH 43 (220)
Q Consensus 18 ~~~ta~~~W~~L~~~--f~~~~~~~~~~ 43 (220)
.+-||.++++.|+.. +..-+.+.+|+
T Consensus 47 ~h~sA~eI~~~l~~~~~~~~is~aTVYR 74 (162)
T 4ets_A 47 THYTPESLYMEIKQAEPDLNVGIATVYR 74 (162)
T ss_dssp SCBCHHHHHHHHHHHCGGGCCCHHHHHH
T ss_pred CCCCHHHHHHHHHhhcCCCCCCHHHHHH
Confidence 455666666666665 44434333333
No 69
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=23.83 E-value=1.3e+02 Score=19.95 Aligned_cols=34 Identities=12% Similarity=0.131 Sum_probs=21.5
Q ss_pred CCccHHHHHHHHHHHhccCCchhHhhHHHHHHHh
Q 045690 18 PYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARY 51 (220)
Q Consensus 18 ~~~ta~~~W~~L~~~f~~~~~~~~~~l~~~~~~~ 51 (220)
..-||.++++.|++.+..-+.+.+|+....|...
T Consensus 33 ~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~ 66 (136)
T 1mzb_A 33 RHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAA 66 (136)
T ss_dssp CSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHC
Confidence 4568888888888876655555555554444443
No 70
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=22.95 E-value=1.4e+02 Score=20.40 Aligned_cols=55 Identities=7% Similarity=-0.040 Sum_probs=37.7
Q ss_pred cHHHHHHHHHHHhccCCchhHhhHHHHHHHhhc-CCCcHHHHHHHHHHHHHHHhcc
Q 045690 21 TAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQ-GDLSIQNYLSGIQNLWAKYVDM 75 (220)
Q Consensus 21 ta~~~W~~L~~~f~~~~~~~~~~l~~~~~~~~~-~~~sv~ey~~~~~~l~~~L~~~ 75 (220)
...++++.|-+++...+....+...+.+..+.. +++.+...+.+=..++..|.+.
T Consensus 46 ~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F 101 (140)
T 1vdy_A 46 IVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHY 101 (140)
T ss_dssp HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTC
T ss_pred HHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhc
Confidence 358999999999997776667776677777654 6666555555555555555544
No 71
>2f05_A Paired amphipathic helix protein SIN3B; helix bundle, transcription repressor; NMR {Mus musculus} SCOP: a.59.1.1
Probab=22.60 E-value=72 Score=20.64 Aligned_cols=70 Identities=10% Similarity=0.084 Sum_probs=38.8
Q ss_pred ccHHHHHHHHHHHhccCCchh---HhhHHHHHHHhhcC-------CCcHHHHHHHHHHHHHHHhcccccCCCcccHHHHH
Q 045690 20 KTAKDMWEYLKKVYNQDNTAK---CFHLEYEIARYSQG-------DLSIQNYLSGIQNLWAKYVDMIYVQVPIESLADVQ 89 (220)
Q Consensus 20 ~ta~~~W~~L~~~f~~~~~~~---~~~l~~~~~~~~~~-------~~sv~ey~~~~~~l~~~L~~~~~~~~~~~~~~~~~ 89 (220)
..|....+.+|++|.... .. ...+.+.|..-..+ +.|+.+-+.++..|...=
T Consensus 8 ~dA~~YvnkVK~rF~d~p-~vY~~FL~IL~~yk~~~~d~~g~~~~~~s~~eV~~~V~~LF~~h----------------- 69 (105)
T 2f05_A 8 NNAISYVNKIKTRFLDHP-EIYRSFLEILHTYQKEQLHTKGRPFRGMSEEEVFTEVANLFRGQ----------------- 69 (105)
T ss_dssp HHHHHHHHHHHHHTTTCH-HHHHHHHHHHHHHHHHHSSSSSSSSCCCCHHHHHHHHHHHTTTC-----------------
T ss_pred HHHHHHHHHHHHHHccCh-HHHHHHHHHHHHHHhccccccccccccCcHHHHHHHHHHHHccC-----------------
Confidence 456777888999998632 11 22333333333322 257788888877554221
Q ss_pred HHHHHHHHHHHHhhcchhHHHH
Q 045690 90 GVHEQSKRDQFLMKLRPEYKAA 111 (220)
Q Consensus 90 ~~~d~~~~~~~l~gLp~~~~~~ 111 (220)
.+++.-|-.-||+.+...
T Consensus 70 ----pDLl~eFn~FLP~~~~~~ 87 (105)
T 2f05_A 70 ----EDLLSEFGQFLPEAKRSL 87 (105)
T ss_dssp ----HHHHHHHHHHSCGGGC--
T ss_pred ----HHHHHHHHHHCCCccccC
Confidence 234444777788876544
No 72
>4aj5_1 SKA3, spindle and kinetochore-associated protein 3; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=22.18 E-value=1.6e+02 Score=18.81 Aligned_cols=17 Identities=12% Similarity=0.268 Sum_probs=14.0
Q ss_pred cHHHHHHHHHHHHHHHh
Q 045690 57 SIQNYLSGIQNLWAKYV 73 (220)
Q Consensus 57 sv~ey~~~~~~l~~~L~ 73 (220)
.+..|+.+++.|+.-|.
T Consensus 3 ~~~~Ff~KLR~La~tLe 19 (101)
T 4aj5_1 3 PIRSFCGKLRSLASTLD 19 (101)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 46789999999887776
No 73
>1ef4_A Subunit N, DNA-directed RNA polymerase; three helix bundle, zinc binding, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: a.4.11.1
Probab=22.00 E-value=26 Score=19.84 Aligned_cols=8 Identities=50% Similarity=1.024 Sum_probs=6.3
Q ss_pred cccccccc
Q 045690 190 FCNYCKKP 197 (220)
Q Consensus 190 ~C~~C~k~ 197 (220)
.||-||+.
T Consensus 5 RCFTCGkv 12 (55)
T 1ef4_A 5 RCLSCGKP 12 (55)
T ss_dssp SCSCTTSC
T ss_pred ecCCCCCC
Confidence 58888875
No 74
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=21.35 E-value=1.6e+02 Score=18.56 Aligned_cols=25 Identities=12% Similarity=0.196 Sum_probs=16.3
Q ss_pred CCcHHHHHHHHHHHHHHHhcccccCCCc
Q 045690 55 DLSIQNYLSGIQNLWAKYVDMIYVQVPI 82 (220)
Q Consensus 55 ~~sv~ey~~~~~~l~~~L~~~~~~~~~~ 82 (220)
.-+.+||+.-+..+...+. |..+|.
T Consensus 64 ~id~~EF~~~m~~~~~~~~---g~~lP~ 88 (106)
T 1eh2_A 64 MLDRDEFAVAMFLVYCALE---KEPVPM 88 (106)
T ss_dssp BCCHHHHHHHHHHHHHHHH---TCCCCS
T ss_pred cCcHHHHHHHHHHHHHHHc---CCCCCC
Confidence 3577788777776666665 555554
No 75
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=21.29 E-value=1.3e+02 Score=20.40 Aligned_cols=31 Identities=10% Similarity=0.173 Sum_probs=19.2
Q ss_pred CCccHHHHHHHHHHHhccCCchhHhhHHHHH
Q 045690 18 PYKTAKDMWEYLKKVYNQDNTAKCFHLEYEI 48 (220)
Q Consensus 18 ~~~ta~~~W~~L~~~f~~~~~~~~~~l~~~~ 48 (220)
..-||.+|++.|++.+..-+.+.+|+....|
T Consensus 32 ~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L 62 (150)
T 2w57_A 32 QHISAEELYKKLIDLGEEIGLATVYRVLNQF 62 (150)
T ss_dssp SSEEHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 4568888888888876655544444443333
No 76
>4ayb_N DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_N 2y0s_N 2waq_N 4b1o_N 4b1p_O 2pmz_N 3hkz_N
Probab=21.02 E-value=27 Score=20.61 Aligned_cols=9 Identities=22% Similarity=0.349 Sum_probs=6.8
Q ss_pred ccccccccc
Q 045690 189 KFCNYCKKP 197 (220)
Q Consensus 189 ~~C~~C~k~ 197 (220)
..||-||+.
T Consensus 5 VRCFTCGkv 13 (66)
T 4ayb_N 5 IRCFTCGSL 13 (66)
T ss_dssp SBCTTTCCB
T ss_pred cccCCCcHh
Confidence 369999874
No 77
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=20.96 E-value=62 Score=26.17 Aligned_cols=51 Identities=10% Similarity=0.133 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhc--cCCchhHhhHHHHHHHhhcC-CCcHHHHHHHHHHHHHHH
Q 045690 22 AKDMWEYLKKVYN--QDNTAKCFHLEYEIARYSQG-DLSIQNYLSGIQNLWAKY 72 (220)
Q Consensus 22 a~~~W~~L~~~f~--~~~~~~~~~l~~~~~~~~~~-~~sv~ey~~~~~~l~~~L 72 (220)
...+-+.|+..+. .++...+.++..+|.....- .+.|+..+..|+.|...|
T Consensus 90 ~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l 143 (390)
T 1deq_A 90 TKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQRINLLQKNV 143 (390)
T ss_pred HHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4455666666666 33444555555555444443 456666666666665553
No 78
>2ds5_A CLPX, ATP-dependent CLP protease ATP-binding subunit CLPX; treble cleft zinc finger, metal binding protein, protein binding; HET: PG4; 1.50A {Escherichia coli} SCOP: g.39.1.11 PDB: 2ds6_A 2ds8_A 2ds7_A
Probab=20.93 E-value=35 Score=18.92 Aligned_cols=12 Identities=33% Similarity=1.021 Sum_probs=9.1
Q ss_pred cccccccccccc
Q 045690 189 KFCNYCKKPGHI 200 (220)
Q Consensus 189 ~~C~~C~k~GH~ 200 (220)
..|.+||+..+-
T Consensus 12 ~~CSFCGk~~~e 23 (51)
T 2ds5_A 12 LYCSFCGKSQHE 23 (51)
T ss_dssp CBCTTTCCBTTT
T ss_pred cEecCCCCCHHH
Confidence 469999996653
No 79
>2an7_A Protein PARD; bacterial antidote, ribbon-helix-helix, DNA-binding motif, plasmid addiction, DNA binding protein; NMR {Escherichia coli}
Probab=20.65 E-value=1.6e+02 Score=18.05 Aligned_cols=35 Identities=11% Similarity=0.255 Sum_probs=21.6
Q ss_pred HHHHHhhc-CCCcHHHHHHHH--------HHHHHHHhcccccCC
Q 045690 46 YEIARYSQ-GDLSIQNYLSGI--------QNLWAKYVDMIYVQV 80 (220)
Q Consensus 46 ~~~~~~~~-~~~sv~ey~~~~--------~~l~~~L~~~~~~~~ 80 (220)
+.+..+-. .|.||.+|+.++ ..-|.+|+.+++..+
T Consensus 14 ~rLKalAa~qG~SInqli~E~lf~~~~~~~~aw~el~~~l~~ri 57 (83)
T 2an7_A 14 QSLKALAALQGKTIKQYALERLFPGDADADQAWQELKTMLGNRI 57 (83)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHTSCCCSSHHHHHHHHHHHSCSCC
T ss_pred HHHHHHHHHcCCcHHHHHHHHcccCCCcHHHHHHHHHHHHHHHH
Confidence 33444433 588999999887 445666665555443
No 80
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Probab=20.64 E-value=1.9e+02 Score=19.11 Aligned_cols=25 Identities=12% Similarity=0.112 Sum_probs=14.5
Q ss_pred CCcHHHHHHHHHHHHHHHhcccccCCCc
Q 045690 55 DLSIQNYLSGIQNLWAKYVDMIYVQVPI 82 (220)
Q Consensus 55 ~~sv~ey~~~~~~l~~~L~~~~~~~~~~ 82 (220)
.-+.+||+.-|.-+...+. |..+|.
T Consensus 82 ~Ld~~EF~~aM~Li~~~~~---G~~lP~ 106 (121)
T 3fia_A 82 RMDQVEFSIAMKLIKLKLQ---GYQLPS 106 (121)
T ss_dssp EECHHHHHHHHHHHHHHHT---TCCCCS
T ss_pred cCCHHHHHHHHHHHHHHHc---CCCCCC
Confidence 4566677666666655554 554444
No 81
>3a4c_A DNA replication factor CDT1; alpha-beta structure, cell cycle, DNA- binding, nucleus, phosphoprotein, proto-oncogene, UBL conjugation; HET: DNA; 1.89A {Mus musculus} PDB: 2rqq_A*
Probab=20.55 E-value=1.4e+02 Score=19.36 Aligned_cols=39 Identities=18% Similarity=0.221 Sum_probs=25.8
Q ss_pred HHHHHHHhhcchhHHHHHHhhhc-CCCCCCHHHHHHHHHH
Q 045690 95 SKRDQFLMKLRPEYKAARSNLMN-RDLSPSLDVCFKELLR 133 (220)
Q Consensus 95 ~~~~~~l~gLp~~~~~~~~~~~~-~~~~~t~~e~~~~l~~ 133 (220)
++....+..||.=...++..+.+ +++.++++.++..+.+
T Consensus 6 eke~~~~srLPelArilR~vFvaEkK~vl~~e~~~~ki~~ 45 (106)
T 3a4c_A 6 ELRLQRLERLPELARVLRNVFVSERKPALTMEVVCARMVD 45 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcccCCccHHHHHHHHHh
Confidence 33444677777666666665555 6677788888877754
No 82
>3r2v_A PB2 C-terminal subunit; structural genomics, seattle structural genomics center for infectious disease, ssgcid, polymerase BASI H3N2, H1N1; 1.30A {Influenza a virus} PDB: 2vy6_A 3cw4_A 3l56_A 3kc6_A 3khw_A 2gmo_A 2jdq_D
Probab=20.33 E-value=1.3e+02 Score=21.07 Aligned_cols=53 Identities=17% Similarity=0.248 Sum_probs=31.6
Q ss_pred HHHHHHHhccCCchhHhhHHHHHHHhhcCCCcHHHHHHHHHHHHHHHhccccc
Q 045690 26 WEYLKKVYNQDNTAKCFHLEYEIARYSQGDLSIQNYLSGIQNLWAKYVDMIYV 78 (220)
Q Consensus 26 W~~L~~~f~~~~~~~~~~l~~~~~~~~~~~~sv~ey~~~~~~l~~~L~~~~~~ 78 (220)
|..++..|..+.........-+=+...-....-.+|-.=.+.|..++++++|.
T Consensus 20 we~vKiQws~~p~~lynk~eFEpFqSlvPka~r~qYSGFvRtlfqQMRDvlgt 72 (216)
T 3r2v_A 20 WEAVKIQWSQNPAMLYNKMEFEPFQSLVPKAIRSQYSGFVRTLFQQMRDVLGT 72 (216)
T ss_dssp HHHHHHHHHHCHHHHHTCGGGHHHHTTSCTTTHHHHHHHHHHHHHHHHHSTTC
T ss_pred hHhhhhhhccCHHHHhhhhhcchhhhhchHHHhhhhhHHHHHHHHHHHHHHcc
Confidence 77888877755422222222221222224456678888888889999887654
No 83
>2lnh_A N-WAsp, neural wiskott-aldrich syndrome protein; protein complex, signaling protein-protein binding complex; NMR {Homo sapiens}
Probab=20.31 E-value=48 Score=19.41 Aligned_cols=14 Identities=36% Similarity=0.342 Sum_probs=11.1
Q ss_pred HhhcchhHHHHHHh
Q 045690 101 LMKLRPEYKAARSN 114 (220)
Q Consensus 101 l~gLp~~~~~~~~~ 114 (220)
+.|||++|..+-..
T Consensus 20 ~~glp~eW~~ll~~ 33 (65)
T 2lnh_A 20 LNNLDPELKNLFDM 33 (65)
T ss_dssp GGGCCTTHHHHHHH
T ss_pred CcCCCHHHHHHHHH
Confidence 67999999887543
No 84
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=20.12 E-value=2.6e+02 Score=20.35 Aligned_cols=58 Identities=10% Similarity=0.092 Sum_probs=36.0
Q ss_pred HHhccC-CCccHHHHHHHHHHHhccCCchhHhhHHHHHHHhhcC-CCcHH------HHHHHHHHHH
Q 045690 12 LVLNLK-PYKTAKDMWEYLKKVYNQDNTAKCFHLEYEIARYSQG-DLSIQ------NYLSGIQNLW 69 (220)
Q Consensus 12 ~~~~i~-~~~ta~~~W~~L~~~f~~~~~~~~~~l~~~~~~~~~~-~~sv~------ey~~~~~~l~ 69 (220)
|.+.|. ....++++...|+.+....+..........+..+.+. |..+. +|+++|..++
T Consensus 29 icd~i~~~~~~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~ 94 (220)
T 1dvp_A 29 ICDEINQKDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFL 94 (220)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHH
T ss_pred HHHhhcCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHh
Confidence 344443 2458999999999999866655555556666676664 44443 2555555444
Done!