BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045695
         (277 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1JU2|A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond
 pdb|1JU2|B Chain B, Crystal Structure Of The Hydroxynitrile Lyase From Almond
          Length = 536

 Score =  229 bits (583), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 117/262 (44%), Positives = 165/262 (62%), Gaps = 7/262 (2%)

Query: 19  SFMHNATAAQPVSYYDYIIIGGGTAGCPLAATLSQNASVLLLERGGSPYGNPNITNLGSF 78
           SF ++AT  +    YDY+I+GGGT+GCPLAATLS+   VL+LERG  P   PN+     F
Sbjct: 13  SFAYDATDLELEGSYDYVIVGGGTSGCPLAATLSEKYKVLVLERGSLPTAYPNVLTADGF 72

Query: 79  GAALS-DLSSTSPSQRFISEDGVINSRARVLGGGSCLNAGFYTRA--APYYVRETGWDER 135
              L  +    +P +RF+SEDG+ N R RVLGG S +NAG Y RA  + Y      WD  
Sbjct: 73  VYNLQQEDDGKTPVERFVSEDGIDNVRGRVLGGTSIINAGVYARANTSIYSASGVDWDMD 132

Query: 136 LVNESYQWVEKVVAFEPPMRQWQSAVRDGLVEVGVLPYNGFTYDHLYGTKIGGTIFDQNG 195
           LVN++Y+WVE  + ++P  + WQS  +   +E GV P +GF+ DH  GT+I G+ FD  G
Sbjct: 133 LVNQTYEWVEDTIVYKPNSQSWQSVTKTAFLEAGVHPNHGFSLDHEEGTRITGSTFDNKG 192

Query: 196 QRHTAADLLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNG 255
            RH A +LL   N + L + +HA+V K++F         A GV++RD+ G  H+A++++ 
Sbjct: 193 TRHAADELLNKGNSNNLRVGVHASVEKIIF--SNAPGLTATGVIYRDSNGTPHQAFVRS- 249

Query: 256 PKNEIIVSAGALGSPQLLMLSG 277
            K E+IVSAG +G+PQLL+LSG
Sbjct: 250 -KGEVIVSAGTIGTPQLLLLSG 270


>pdb|3GDN|A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde
 pdb|3GDN|B Chain B, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde
 pdb|3GDP|A Chain A, Hydroxynitrile Lyase From Almond, Monoclinic Crystal Form
 pdb|3GDP|B Chain B, Hydroxynitrile Lyase From Almond, Monoclinic Crystal Form
          Length = 521

 Score =  228 bits (581), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 117/262 (44%), Positives = 165/262 (62%), Gaps = 7/262 (2%)

Query: 19  SFMHNATAAQPVSYYDYIIIGGGTAGCPLAATLSQNASVLLLERGGSPYGNPNITNLGSF 78
           SF ++AT  +    YDY+I+GGGT+GCPLAATLS+   VL+LERG  P   PN+     F
Sbjct: 13  SFAYDATDLELEGSYDYVIVGGGTSGCPLAATLSEKYKVLVLERGSLPTAYPNVLTADGF 72

Query: 79  GAALS-DLSSTSPSQRFISEDGVINSRARVLGGGSCLNAGFYTRA--APYYVRETGWDER 135
              L  +    +P +RF+SEDG+ N R RVLGG S +NAG Y RA  + Y      WD  
Sbjct: 73  VYNLQQEDDGKTPVERFVSEDGIDNVRGRVLGGTSIINAGVYARANTSIYSASGVDWDMD 132

Query: 136 LVNESYQWVEKVVAFEPPMRQWQSAVRDGLVEVGVLPYNGFTYDHLYGTKIGGTIFDQNG 195
           LVN++Y+WVE  + ++P  + WQS  +   +E GV P +GF+ DH  GT+I G+ FD  G
Sbjct: 133 LVNQTYEWVEDTIVYKPNSQSWQSVTKTAFLEAGVHPNHGFSLDHEEGTRITGSTFDNKG 192

Query: 196 QRHTAADLLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNG 255
            RH A +LL   N + L + +HA+V K++F         A GV++RD+ G  H+A++++ 
Sbjct: 193 TRHAADELLNKGNSNNLRVGVHASVEKIIF--SNAPGLTATGVIYRDSNGTPHQAFVRS- 249

Query: 256 PKNEIIVSAGALGSPQLLMLSG 277
            K E+IVSAG +G+PQLL+LSG
Sbjct: 250 -KGEVIVSAGTIGTPQLLLLSG 270


>pdb|3RED|A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
           Isozyme-1
 pdb|3RED|B Chain B, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
           Isozyme-1
 pdb|3RED|C Chain C, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
           Isozyme-1
 pdb|3RED|D Chain D, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
           Isozyme-1
 pdb|3RED|E Chain E, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
           Isozyme-1
 pdb|3RED|F Chain F, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
           Isozyme-1
 pdb|3RED|G Chain G, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
           Isozyme-1
 pdb|3RED|H Chain H, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
           Isozyme-1
 pdb|3RED|I Chain I, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
           Isozyme-1
 pdb|3RED|J Chain J, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
           Isozyme-1
 pdb|3RED|K Chain K, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
           Isozyme-1
 pdb|3RED|L Chain L, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
           Isozyme-1
          Length = 521

 Score =  226 bits (576), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 115/262 (43%), Positives = 166/262 (63%), Gaps = 6/262 (2%)

Query: 19  SFMHNATAAQPVSYYDYIIIGGGTAGCPLAATLSQNASVLLLERGGSPYGNPNITNLGSF 78
           SF ++AT  +    YDY+I+GGGT+GCPLAATLS+   VL+LERG  P   PN+     F
Sbjct: 13  SFAYDATDLELEGSYDYVIVGGGTSGCPLAATLSEKYKVLVLERGTLPTAYPNLLTSDGF 72

Query: 79  GAALS-DLSSTSPSQRFISEDGVINSRARVLGGGSCLNAGFYTRAAPYYVRETG--WDER 135
              L  +    +P +RF+S DG+ + R RVLGG S +NAG Y RA       +G  WD  
Sbjct: 73  IYNLQQEDDGQTPVERFVSGDGIDDVRGRVLGGTSMINAGVYARANTKIFSASGIEWDMD 132

Query: 136 LVNESYQWVEKVVAFEPPMRQWQSAVRDGLVEVGVLPYNGFTYDHLYGTKIGGTIFDQNG 195
           LVN++Y WVE  + ++P  + WQS  +   +E GVLP NGF+ DH  GT++ G+ FD NG
Sbjct: 133 LVNQTYDWVEDTIVYKPDKQAWQSLTKTAFLEAGVLPDNGFSLDHEAGTRLTGSTFDNNG 192

Query: 196 QRHTAADLLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNG 255
            RH + +LL   +P+ L + +HA+V K++F     +   A GV+++D+ G  H+A+++  
Sbjct: 193 TRHASDELLNKGDPNNLRVAVHASVEKIIFS-SNSSGVTAIGVIYKDSNGTPHQAFVRG- 250

Query: 256 PKNEIIVSAGALGSPQLLMLSG 277
            + E+IVSAG +GSPQLL+LSG
Sbjct: 251 -EGEVIVSAGPIGSPQLLLLSG 271


>pdb|1GPE|A Chain A, Glucose Oxidase From Penicillium Amagasakiense
 pdb|1GPE|B Chain B, Glucose Oxidase From Penicillium Amagasakiense
          Length = 587

 Score = 57.4 bits (137), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 120/299 (40%), Gaps = 71/299 (23%)

Query: 33  YDYIIIGGGTAGCPLAATLSQN--ASVLLLERG------GSPYGNPNITNLGSFGAALSD 84
           YDYII GGG  G  +AA L++N    VL++E+G      G+   +PN         A   
Sbjct: 25  YDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAIIEDPN---------AYGQ 75

Query: 85  LSSTSPSQRFISEDGVINSRA------RVLGGGSCLNAGFYTRAAPYYVRETGWDERLVN 138
           +  T+  Q +++   +IN+R       + LGG + +N   +TR  P  V+   W++    
Sbjct: 76  IFGTTVDQNYLTVP-LINNRTNNIKAGKGLGGSTLINGDSWTR--PDKVQIDSWEKVFGM 132

Query: 139 ESYQW------VEKVVAFEPPMRQW------------------QSAVRDG---------- 164
           E + W      ++K  A   P                      QS  RD           
Sbjct: 133 EGWNWDNMFEYMKKAEAARTPTAAQLAAGHSFNATCHGTNGTVQSGARDNGQPWSPIMKA 192

Query: 165 ----LVEVGVLPYNGFTYDHLYGTKIGGTIFDQNGQRHTAAD--LLEYANPSGLTLLLHA 218
               +  +GV     F   H  G  +     D+N  R  AA   LL     S L +L   
Sbjct: 193 LMNTVSALGVPVQQDFLCGHPRGVSMIMNNLDENQVRVDAARAWLLPNYQRSNLEILTGQ 252

Query: 219 TVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 277
            V KVLF+ +  + PQA GV F    G           K+E++++AG+  SP +L  SG
Sbjct: 253 MVGKVLFK-QTASGPQAVGVNF----GTNKAVNFDVFAKHEVLLAAGSAISPLILEYSG 306


>pdb|1CF3|A Chain A, Glucose Oxidase From Apergillus Niger
 pdb|1GAL|A Chain A, Crystal Structure Of Glucose Oxidase From Aspergillus
           Niger: Refined At 2.3 Angstroms Resolution
 pdb|3QVP|A Chain A, Crystal Structure Of Glucose Oxidase For Space Group C2221
           At 1.2 A Resolution
 pdb|3QVR|A Chain A, Crystal Structure Of Glucose Oxidase For Space Group P3121
           At 1.3 A Resolution
          Length = 583

 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 78/299 (26%), Positives = 120/299 (40%), Gaps = 72/299 (24%)

Query: 34  DYIIIGGGTAGCPLAATLSQNA--SVLLLERGG--SPYGNPNITNLGSFGAALSDLSSTS 89
           DYII GGG  G   AA L++N   SVL++E G   S  G P I +L ++G    D+  +S
Sbjct: 21  DYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRG-PIIEDLNAYG----DIFGSS 75

Query: 90  PSQRFISEDGVINSRARV------LGGGSCLNAGFYTRAAPYYVRETGWDERLVNESYQW 143
               + + +   N++  +      LGG + +N G +TR  P+  +   W+    NE + W
Sbjct: 76  VDHAYETVELATNNQTALIRSGNGLGGSTLVNGGTWTR--PHKAQVDSWETVFGNEGWNW 133

Query: 144 -----------------VEKVVA-------------------------FEPPMRQWQSAV 161
                             +++ A                         + P ++   SAV
Sbjct: 134 DNVAAYSLQAERARAPNAKQIAAGHYFNASCHGVNGTVHAGPRDTGDDYSPIVKALMSAV 193

Query: 162 RDGLVEVGVLPYNGFTYDHLYGTKIGGTIFDQNGQRHTAAD---LLEYANPSGLTLLLHA 218
            D     GV     F     +G  +      ++  R  AA    L  Y  P+ L +L   
Sbjct: 194 ED----RGVPTKKDFGCGDPHGVSMFPNTLHEDQVRSDAAREWLLPNYQRPN-LQVLTGQ 248

Query: 219 TVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 277
            V KVL    G   P+A GV F    G  H  Y     K+E++++AG+  SP +L  SG
Sbjct: 249 YVGKVLLSQNGTT-PRAVGVEFGTHKGNTHNVY----AKHEVLLAAGSAVSPTILEYSG 302


>pdb|3T37|A Chain A, Crystal Structure Of Pyridoxine 4-Oxidase From Mesorbium
           Loti
          Length = 526

 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 79/277 (28%), Positives = 120/277 (43%), Gaps = 48/277 (17%)

Query: 34  DYIIIGGGTAGCPLAATLSQ--NASVLLLERGGSPYGNPNITNLGSFGAALS---DLSST 88
           D +I+GGG+AG  LAA LS+  ++ VLL+E G  P  +P+I N  ++ A      D    
Sbjct: 19  DIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEEPT-DPDIWNPAAWPALQGRSYDWDYR 77

Query: 89  SPSQRFISEDGVINSRARVLGGGSCLNAGFYTRAAPYYV---------RETGWDERLVNE 139
           + +Q   +      +R R++GG SCL+A  Y R  P            R  GWDE L   
Sbjct: 78  TEAQAGTAGRAHHWARGRLIGGSSCLHAMGYMRGHPSDFQAWVDASGDRRWGWDELL--P 135

Query: 140 SYQWVEK-------------VVAFEPPMRQWQSAVRDGLVEVGVLPYNGFTYDHLYGTKI 186
            +Q +E               +    P  +     R   +E G          H  G  I
Sbjct: 136 VFQAIEDHPLGGDGIHGKGGPLPIHLPADEVSPLAR-AFIEAGASLGLPRLEGHNSGEMI 194

Query: 187 GGT---IFDQNGQRHTAADLLEYANPSG---LTLLLHATVHKVLFRIKGKARPQAHGVVF 240
           G T   +  ++G+R TAAD        G   LT+L  + V +   +++G  + ++  VV 
Sbjct: 195 GVTPNSLNIRDGRRVTAADAWLTKAVRGRKNLTILTGSRVRR--LKLEGN-QVRSLEVVG 251

Query: 241 RDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 277
           R  +             ++I++ AGAL SP LLM SG
Sbjct: 252 RQGSAEVF--------ADQIVLCAGALESPALLMRSG 280


>pdb|3Q9T|A Chain A, Crystal Structure Analysis Of Formate Oxidase
 pdb|3Q9T|B Chain B, Crystal Structure Analysis Of Formate Oxidase
 pdb|3Q9T|C Chain C, Crystal Structure Analysis Of Formate Oxidase
          Length = 577

 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 55/112 (49%), Gaps = 10/112 (8%)

Query: 31  SYYDYIIIGGGTAGCPLAATLSQ--NASVLLLERG-GSPYGNPNITNLGSFGAALSDLSS 87
           S++D++I+GGGTAG  +A  L++  N +VL++E G G+P   P IT   S     +    
Sbjct: 5   SHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIGNPEDIPEITTPSSAMDLRNSKYD 64

Query: 88  TSPSQRFISEDGV-----INSRARVLGGGSCLNAGFYTRAAPYYVRETGWDE 134
            +     +  D        N+R + LGG S LN  ++T    +      W+E
Sbjct: 65  WAYKTTMVRRDDYERIEKPNTRGKTLGGSSSLN--YFTWVPGHKATFDQWEE 114


>pdb|3FIM|B Chain B, Crystal Structure Of Aryl-Alcohol-Oxidase From Pleurotus
           Eryingii
          Length = 566

 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 124/293 (42%), Gaps = 58/293 (19%)

Query: 33  YDYIIIGGGTAGCPLAATLSQ--NASVLLLERGGSPYGNPNITNLGSFGAALS------- 83
           +DY+++G G AG  +AA L++  + SVL+LE G S   + N+  LG+    L+       
Sbjct: 3   FDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVS---DENV--LGAEAPLLAPGLVPNS 57

Query: 84  --DLSSTSPSQRFISEDGVINSRARVLGGGSCLNAGFYTRAA----PYYVRETGWDERLV 137
             D + T+ +Q   +   +   R R+LGG S ++     R +      Y   TG +    
Sbjct: 58  IFDWNYTTTAQAGYNGRSIAYPRGRMLGGSSSVHYMVMMRGSTEDFDRYAAVTGDEGWNW 117

Query: 138 NESYQWVEKVVAFEPPMR------QWQSAVR--DGLVEVGVLPYNGFTYDHLYGTK---- 185
           +   Q+V K     PP        ++  AV   +G V + +  +     D +  T     
Sbjct: 118 DNIQQFVRKNEMVVPPADNHNTSGEFIPAVHGTNGSVSISLPGFPTPLDDRVLATTQEQS 177

Query: 186 ----------------IGGTIFDQ-NGQRHTAADLLEYANPS----GLTLLLHATVHKVL 224
                           I  +I    NGQR +++    Y  P+     L++L++A V K++
Sbjct: 178 EEFFFNPDMGTGHPLGISWSIASVGNGQRSSSS--TAYLRPAQSRPNLSVLINAQVTKLV 235

Query: 225 FRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 277
                   P    V + +  GA          K E+++SAG++G+P LL LSG
Sbjct: 236 NSGTTNGLPAFRCVEYAEQEGAPTTTVCA---KKEVVLSAGSVGTPILLQLSG 285


>pdb|1NAA|A Chain A, Cellobiose Dehydrogenase Flavoprotein Fragment In Complex
           With Cellobionolactam
 pdb|1NAA|B Chain B, Cellobiose Dehydrogenase Flavoprotein Fragment In Complex
           With Cellobionolactam
          Length = 541

 Score = 35.4 bits (80), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 73/274 (26%), Positives = 108/274 (39%), Gaps = 40/274 (14%)

Query: 33  YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP-------YGNPNITNLGSFGAALSD 84
           YDYII+G G  G   A  LS+    VLLLERGG         Y  P  T+ G     +  
Sbjct: 3   YDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDIPG 62

Query: 85  L--SSTSPSQRFISEDGVINSRARVLGGGSCLNAGFYTRAAP-YYVRETGWDERLVNE-- 139
           L  S  + S  F     +      ++GGG+ +N   Y       +    GW     N   
Sbjct: 63  LFESLFTDSNPFWWCKDITVFAGCLVGGGTSVNGALYWYPNDGDFSSSVGWPSSWTNHAP 122

Query: 140 -SYQWVEKVVAFEPPMRQWQSAVRDGLVEVGVL----PYNGFTY-------DHLYGTKIG 187
            + +   ++ + + P    Q  +      V  L     YN  T        DH++G    
Sbjct: 123 YTSKLSSRLPSTDHPSTDGQRYLEQSFNVVSQLLKGQGYNQATINDNPNYKDHVFGY--- 179

Query: 188 GTIFD-QNGQRH-TAADLLE--YANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDA 243
            + FD  NG+R    A  L+   A P+  T   +  V  V+     +   Q  GV   D 
Sbjct: 180 -SAFDFLNGKRAGPVATYLQTALARPN-FTFKTNVMVSNVV-----RNGSQILGVQTNDP 232

Query: 244 TGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 277
           T   +  ++   PK  +I+SAGA G+ ++L  SG
Sbjct: 233 TLGPN-GFIPVTPKGRVILSAGAFGTSRILFQSG 265


>pdb|1KDG|A Chain A, Crystal Structure Of The Flavin Domain Of Cellobiose
           Dehydrogenase
 pdb|1KDG|B Chain B, Crystal Structure Of The Flavin Domain Of Cellobiose
           Dehydrogenase
          Length = 546

 Score = 35.4 bits (80), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 73/274 (26%), Positives = 108/274 (39%), Gaps = 40/274 (14%)

Query: 33  YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP-------YGNPNITNLGSFGAALSD 84
           YDYII+G G  G   A  LS+    VLLLERGG         Y  P  T+ G     +  
Sbjct: 8   YDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDIPG 67

Query: 85  L--SSTSPSQRFISEDGVINSRARVLGGGSCLNAGFYTRAAP-YYVRETGWDERLVNE-- 139
           L  S  + S  F     +      ++GGG+ +N   Y       +    GW     N   
Sbjct: 68  LFESLFTDSNPFWWCKDITVFAGCLVGGGTSVNGALYWYPNDGDFSSSVGWPSSWTNHAP 127

Query: 140 -SYQWVEKVVAFEPPMRQWQSAVRDGLVEVGVL----PYNGFTY-------DHLYGTKIG 187
            + +   ++ + + P    Q  +      V  L     YN  T        DH++G    
Sbjct: 128 YTSKLSSRLPSTDHPSTDGQRYLEQSFNVVSQLLKGQGYNQATINDNPNYKDHVFGY--- 184

Query: 188 GTIFD-QNGQRH-TAADLLE--YANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDA 243
            + FD  NG+R    A  L+   A P+  T   +  V  V+     +   Q  GV   D 
Sbjct: 185 -SAFDFLNGKRAGPVATYLQTALARPN-FTFKTNVMVSNVV-----RNGSQILGVQTNDP 237

Query: 244 TGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 277
           T   +  ++   PK  +I+SAGA G+ ++L  SG
Sbjct: 238 TLGPN-GFIPVTPKGRVILSAGAFGTSRILFQSG 270


>pdb|3NNE|A Chain A, Crystal Structure Of Choline Oxidase S101a Mutant
 pdb|3NNE|B Chain B, Crystal Structure Of Choline Oxidase S101a Mutant
 pdb|3NNE|C Chain C, Crystal Structure Of Choline Oxidase S101a Mutant
 pdb|3NNE|D Chain D, Crystal Structure Of Choline Oxidase S101a Mutant
 pdb|3NNE|E Chain E, Crystal Structure Of Choline Oxidase S101a Mutant
 pdb|3NNE|F Chain F, Crystal Structure Of Choline Oxidase S101a Mutant
 pdb|3NNE|G Chain G, Crystal Structure Of Choline Oxidase S101a Mutant
 pdb|3NNE|H Chain H, Crystal Structure Of Choline Oxidase S101a Mutant
          Length = 546

 Score = 34.3 bits (77), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 80/288 (27%), Positives = 121/288 (42%), Gaps = 62/288 (21%)

Query: 33  YDYIIIGGGTAGCPLAATLSQN--ASVLLLERGGSPYGNPNITNLGSFGAALS---DLSS 87
           +DYI++GGG+AG  +AA LS++   SV L+E G    G P +  L  +   L    D   
Sbjct: 14  FDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDWDY 73

Query: 88  TSPSQRFISEDG---VINSRARVLGGGSCLNAGFYTRAAPYYVRE-------TGWDERLV 137
               Q    E+G   + ++RA+V+GG S  NA     A    + E       TGW+    
Sbjct: 74  PIEPQ----ENGNSFMRHARAKVMGGCSSHNACIAFWAPREDLDEWEAKYGATGWNAEAA 129

Query: 138 NESYQWVEKV-----------------VAFEPPMRQWQSAVRDGLVEVGVLPYNGFTYDH 180
              Y+ +E                   +   PP      A+ D   + G+ P   F    
Sbjct: 130 WPLYKRLETNEDAGPDAPHHGDSGPVHLMNVPPKDPTGVALLDACEQAGI-PRAKFN--- 185

Query: 181 LYGTKI--GGTIFDQN----GQRHTAADLLEYANP----SGLTLLLHATVHKVLFRIKGK 230
             GT +  G   F  N    G R +++  + Y +P       TLL      +++F     
Sbjct: 186 -TGTTVVNGANFFQINRRADGTRSSSS--VSYIHPIVEQENFTLLTGLRARQLVF----D 238

Query: 231 ARPQAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 277
           A  +  GV   D A G  HR       +NE+++S GA+ +P+LLMLSG
Sbjct: 239 ADRRCTGVDIVDSAFGHTHRLTA----RNEVVLSTGAIDTPKLLMLSG 282


>pdb|2JBV|A Chain A, Crystal Structure Of Choline Oxidase Reveals Insights Into
           The Catalytic Mechanism
 pdb|2JBV|B Chain B, Crystal Structure Of Choline Oxidase Reveals Insights Into
           The Catalytic Mechanism
          Length = 546

 Score = 33.1 bits (74), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 12/21 (57%), Positives = 19/21 (90%)

Query: 257 KNEIIVSAGALGSPQLLMLSG 277
           +NE+++S GA+ +P+LLMLSG
Sbjct: 262 RNEVVLSTGAIDTPKLLMLSG 282


>pdb|3LJP|A Chain A, Crystal Structure Of Choline Oxidase V464a Mutant
 pdb|3LJP|B Chain B, Crystal Structure Of Choline Oxidase V464a Mutant
          Length = 546

 Score = 33.1 bits (74), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 12/21 (57%), Positives = 19/21 (90%)

Query: 257 KNEIIVSAGALGSPQLLMLSG 277
           +NE+++S GA+ +P+LLMLSG
Sbjct: 262 RNEVVLSTGAIDTPKLLMLSG 282


>pdb|3NYE|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa D-Arginine
          Dehydrogenase In Complex With Imino-Arginine
 pdb|3NYF|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa D-Arginine
          Dehydrogenase In Complex With Imino-Histidine
 pdb|3NYC|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa D-Arginine
          Dehydrogenase
 pdb|3SM8|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa D-Arginine
          Dehydrogenase In Complex With An (N5) Flavin Adduct
          Length = 381

 Score = 30.8 bits (68), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 15/66 (22%)

Query: 34 DYIIIGGGTAGCPLAATLSQNASVLLLERGGSP---------------YGNPNITNLGSF 78
          DY++IG G AG      LS +  V++LER   P               YG P +  L + 
Sbjct: 11 DYLVIGAGIAGASTGYWLSAHGRVVVLEREAQPGYHSTGRSAAHYTVAYGTPQVRALTAA 70

Query: 79 GAALSD 84
            A  D
Sbjct: 71 SRAFFD 76


>pdb|1I8T|A Chain A, Strcuture Of Udp-Galactopyranose Mutase From E.Coli
 pdb|1I8T|B Chain B, Strcuture Of Udp-Galactopyranose Mutase From E.Coli
          Length = 367

 Score = 30.4 bits (67), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 5/40 (12%)

Query: 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLER----GGSPY 67
          YDYII+G G  G   A  L + N  VL++E+    GG+ Y
Sbjct: 2  YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAY 41


>pdb|3E1T|A Chain A, Structure And Action Of The Myxobacterial Chondrochloren
          Halogenase Cndh, A New Variant Of Fad-Dependent
          Halogenases
          Length = 512

 Score = 30.0 bits (66), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 33 YDYIIIGGGTAGCPLAATLSQNA-SVLLLERGGSP 66
          +D I+IGGG  G  LA+ ++     VLLLER   P
Sbjct: 8  FDLIVIGGGPGGSTLASFVAMRGHRVLLLEREAFP 42


>pdb|2GAG|B Chain B, Heteroteterameric Sarcosine: Structure Of A Diflavin
          Metaloenzyme At 1.85 A Resolution
          Length = 405

 Score = 30.0 bits (66), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 3/45 (6%)

Query: 28 QPVSYYDYIIIGGGTAGCPLAATLSQN---ASVLLLERGGSPYGN 69
          +P   YD II+GGG  G   A  L++N    +V +LE+G    GN
Sbjct: 17 EPKKSYDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKGWLAGGN 61


>pdb|2GAH|B Chain B, Heterotetrameric Sarcosine: Structure Of A Diflavin
          Metaloenzyme At 1.85 A Resolution
          Length = 405

 Score = 29.6 bits (65), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 3/45 (6%)

Query: 28 QPVSYYDYIIIGGGTAGCPLAATLSQN---ASVLLLERGGSPYGN 69
          +P   YD II+GGG  G   A  L++N    +V +LE+G    GN
Sbjct: 17 EPKKSYDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKGWLAGGN 61


>pdb|3P1W|A Chain A, Crystal Structure Of Rab Gdi From Plasmodium Falciparum,
           Pfl2060c
          Length = 475

 Score = 29.6 bits (65), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 7/99 (7%)

Query: 31  SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERG---GSPYGNPNITNLGSFGAALSDLS 86
            +YD II+G G   C L+  LS     +L+L+R    G    + N+TNL +      ++ 
Sbjct: 19  EHYDVIILGTGLKECILSGLLSHYGKKILVLDRNPYYGGETASLNLTNLYNTFKPKENIP 78

Query: 87  STSPSQRFISEDGVINSRARVLGGGSCLNAGFYTRAAPY 125
           S     R  + D +      +L GG+ +     TR   Y
Sbjct: 79  SKYGENRHWNVDLI---PKFILVGGNLVKILKKTRVTNY 114


>pdb|3HDQ|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase
          (Oxidized Form) In Complex With Substrate
 pdb|3HDQ|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase
          (Oxidized Form) In Complex With Substrate
 pdb|3HDQ|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase
          (Oxidized Form) In Complex With Substrate
 pdb|3HDQ|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase
          (Oxidized Form) In Complex With Substrate
 pdb|3HDQ|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase
          (Oxidized Form) In Complex With Substrate
 pdb|3HDQ|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase
          (Oxidized Form) In Complex With Substrate
 pdb|3HDQ|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase
          (Oxidized Form) In Complex With Substrate
 pdb|3HDQ|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase
          (Oxidized Form) In Complex With Substrate
 pdb|3HDQ|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase
          (Oxidized Form) In Complex With Substrate
 pdb|3HDQ|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase
          (Oxidized Form) In Complex With Substrate
 pdb|3HDY|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
          Form) In Complex With Substrate
 pdb|3HDY|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
          Form) In Complex With Substrate
 pdb|3HDY|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
          Form) In Complex With Substrate
 pdb|3HDY|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
          Form) In Complex With Substrate
 pdb|3HDY|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
          Form) In Complex With Substrate
 pdb|3HDY|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
          Form) In Complex With Substrate
 pdb|3HDY|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
          Form) In Complex With Substrate
 pdb|3HDY|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
          Form) In Complex With Substrate
 pdb|3HDY|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
          Form) In Complex With Substrate
 pdb|3HDY|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
          Form) In Complex With Substrate
 pdb|3HE3|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase In
          Complex With Udp
 pdb|3HE3|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase In
          Complex With Udp
 pdb|3HE3|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase In
          Complex With Udp
 pdb|3HE3|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase In
          Complex With Udp
 pdb|3HE3|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase In
          Complex With Udp
 pdb|3HE3|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase In
          Complex With Udp
 pdb|3HE3|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase In
          Complex With Udp
 pdb|3HE3|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase In
          Complex With Udp
 pdb|3HE3|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase In
          Complex With Udp
 pdb|3HE3|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase In
          Complex With Udp
 pdb|3MJ4|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase In
          Complex With Phosphonate Analog Of Udp-Galactopyranose
 pdb|3MJ4|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase In
          Complex With Phosphonate Analog Of Udp-Galactopyranose
 pdb|3MJ4|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase In
          Complex With Phosphonate Analog Of Udp-Galactopyranose
 pdb|3MJ4|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase In
          Complex With Phosphonate Analog Of Udp-Galactopyranose
 pdb|3MJ4|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase In
          Complex With Phosphonate Analog Of Udp-Galactopyranose
 pdb|3MJ4|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase In
          Complex With Phosphonate Analog Of Udp-Galactopyranose
 pdb|3MJ4|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase In
          Complex With Phosphonate Analog Of Udp-Galactopyranose
 pdb|3MJ4|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase In
          Complex With Phosphonate Analog Of Udp-Galactopyranose
 pdb|3MJ4|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase In
          Complex With Phosphonate Analog Of Udp-Galactopyranose
 pdb|3MJ4|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase In
          Complex With Phosphonate Analog Of Udp-Galactopyranose
          Length = 397

 Score = 28.9 bits (63), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 6/51 (11%)

Query: 23 NATAAQPVSY-YDYIIIGGGTAGCPLAATL-SQNASVLLLER----GGSPY 67
          N T  Q  S  +DY+I+G G AG  LA  L S    VL+++R    GG+ Y
Sbjct: 19 NTTNEQQESKGFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIGGNAY 69


>pdb|3CGC|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
          Coenzyme A- Disulfide Reductase: A Structural Analysis
          Of Dual Nad(p)h Specificity
 pdb|3CGC|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
          Coenzyme A- Disulfide Reductase: A Structural Analysis
          Of Dual Nad(p)h Specificity
 pdb|3CGD|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
          Coenzyme A- Disulfide Reductase: A Structural Analysis
          Of Dual Nad(p)h Specificity
 pdb|3CGD|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
          Coenzyme A- Disulfide Reductase: A Structural Analysis
          Of Dual Nad(p)h Specificity
 pdb|3CGE|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
          Coenzyme A- Disulfide Reductase: A Structural Analysis
          Of Dual Nad(P)h Specificity
 pdb|3CGE|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
          Coenzyme A- Disulfide Reductase: A Structural Analysis
          Of Dual Nad(P)h Specificity
          Length = 480

 Score = 28.5 bits (62), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 3/33 (9%)

Query: 34 DYIIIGGGTAGCPLAATL---SQNASVLLLERG 63
          +Y+IIGG  AG   A  +    +NA+V+ LE+G
Sbjct: 38 NYVIIGGDAAGMSAAMQIVRNDENANVVTLEKG 70


>pdb|1RP0|A Chain A, Crystal Structure Of Thi1 Protein From Arabidopsis
           Thaliana
 pdb|1RP0|B Chain B, Crystal Structure Of Thi1 Protein From Arabidopsis
           Thaliana
          Length = 284

 Score = 28.1 bits (61), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 7/69 (10%)

Query: 34  DYIIIGGGTAGCPLAATLSQ--NASVLLLERGGSPYGNPNITNLGSFGAALSDLSSTSPS 91
           D +++G G+AG   A  +S+  N  V ++E+  SP G      LG  G   S +    P+
Sbjct: 41  DVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGG---AWLG--GQLFSAMIVRKPA 95

Query: 92  QRFISEDGV 100
             F+ E GV
Sbjct: 96  HLFLDEIGV 104


>pdb|3K7T|A Chain A, Crystal Structure Of Apo-Form 6-Hydroxy-L-Nicotine
          Oxidase, Crystal Form P3121
 pdb|3K7T|B Chain B, Crystal Structure Of Apo-Form 6-Hydroxy-L-Nicotine
          Oxidase, Crystal Form P3121
          Length = 425

 Score = 28.1 bits (61), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 14/36 (38%), Positives = 19/36 (52%)

Query: 33 YDYIIIGGGTAGCPLAATLSQNASVLLLERGGSPYG 68
          YD I++GGG +G   A  L+     +LL  GG   G
Sbjct: 2  YDAIVVGGGFSGLKAARDLTNAGKKVLLLEGGERLG 37


>pdb|3K7M|X Chain X, Crystal Structure Of 6-Hydroxy-L-Nicotine Oxidase From
          Arthrobacter Nicotinovorans
 pdb|3K7Q|X Chain X, Crystal Structure Of Substrate-Bound
          6-Hydroxy-L-Nicotine Oxidase From Arthrobacter
          Nicotinovorans
 pdb|3NG7|X Chain X, Complex Of Dithionite-Reduced 6-Hydroxy-L-Nicotine
          Oxidase With Substrate Bound At Active Site And
          Inhibitor At Exit Cavity
 pdb|3NGC|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With
          Intermediate Methylmyosmine Product Formed During
          Catalytic Turnover
 pdb|3NH3|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Final
          Ketone Product Formed During Catalytic Turnover
 pdb|3NHO|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Product
          Bound At Active Site
 pdb|3NK0|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Inhibitor
          Bound At Active Site And Turnover Product At Exit
          Cavity
 pdb|3NK1|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Serotonin
 pdb|3NK2|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Dopamine
 pdb|3NN6|X Chain X, Crystal Structure Of Inhibitor-Bound In Active Centre
          6-Hydroxy-L- Nicotine Oxidase From Arthrobacter
          Nicotinovorans
 pdb|3NN0|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With
          Nicotinamide
          Length = 431

 Score = 28.1 bits (61), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 14/36 (38%), Positives = 19/36 (52%)

Query: 33 YDYIIIGGGTAGCPLAATLSQNASVLLLERGGSPYG 68
          YD I++GGG +G   A  L+     +LL  GG   G
Sbjct: 2  YDAIVVGGGFSGLKAARDLTNAGKKVLLLEGGERLG 37


>pdb|3UNG|C Chain C, Structure Of The Cmr2 Subunit Of The Crispr Rna Silencing
           Complex
 pdb|3UR3|C Chain C, Structure Of The Cmr2 Subunit Of The Crispr Rna Silencing
           Complex
          Length = 693

 Score = 28.1 bits (61), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 10/34 (29%), Positives = 19/34 (55%)

Query: 100 VINSRARVLGGGSCLNAGFYTRAAPYYVRETGWD 133
           ++N++A+ + G   L  G   R+  YY+   GW+
Sbjct: 555 LLNNKAKNVPGKDTLAIGLLKRSGSYYISLVGWE 588


>pdb|4DOZ|A Chain A, Crystal Structure Of Pyrococcus Furiosus Cmr2 (Cas10)
          Length = 686

 Score = 28.1 bits (61), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 10/34 (29%), Positives = 19/34 (55%)

Query: 100 VINSRARVLGGGSCLNAGFYTRAAPYYVRETGWD 133
           ++N++A+ + G   L  G   R+  YY+   GW+
Sbjct: 540 LLNNKAKNVPGKDTLAIGLLKRSGSYYISLVGWE 573


>pdb|2Q7V|A Chain A, Crystal Structure Of Deinococcus Radiodurans Thioredoxin
          Reductase
 pdb|2Q7V|B Chain B, Crystal Structure Of Deinococcus Radiodurans Thioredoxin
          Reductase
          Length = 325

 Score = 27.7 bits (60), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)

Query: 33 YDYIIIGGGTAGCPLAA-TLSQNASVLLLERG 63
          YD +IIGGG AG   A  T     S L+LE+G
Sbjct: 9  YDVVIIGGGPAGLTAAIYTGRAQLSTLILEKG 40


>pdb|1B77|A Chain A, Building A Replisome Structure From Interacting Pieces: A
           Sliding Clamp Complexed With An Interaction Peptide From
           Dna Polymerase
 pdb|1B77|B Chain B, Building A Replisome Structure From Interacting Pieces: A
           Sliding Clamp Complexed With An Interaction Peptide From
           Dna Polymerase
 pdb|1B77|C Chain C, Building A Replisome Structure From Interacting Pieces: A
           Sliding Clamp Complexed With An Interaction Peptide From
           Dna Polymerase
 pdb|1B8H|A Chain A, Sliding Clamp, Dna Polymerase
 pdb|1B8H|B Chain B, Sliding Clamp, Dna Polymerase
 pdb|1B8H|C Chain C, Sliding Clamp, Dna Polymerase
          Length = 228

 Score = 27.7 bits (60), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 20/68 (29%), Positives = 28/68 (41%)

Query: 34  DYIIIGGGTAGCPLAATLSQNASVLLLERGGSPYGNPNITNLGSFGAALSDLSSTSPSQR 93
           D I I    A       LSQ   ++     G+ Y   NI++   F  AL DL+S      
Sbjct: 6   DTIAILKNFASINSGILLSQGKFIMTRAVNGTTYAEANISDEIDFDVALYDLNSFLSILS 65

Query: 94  FISEDGVI 101
            +S+D  I
Sbjct: 66  LVSDDAEI 73


>pdb|3ATQ|A Chain A, Geranylgeranyl Reductase (Ggr) From Sulfolobus
          Acidocaldarius
 pdb|3ATR|A Chain A, Geranylgeranyl Reductase (Ggr) From Sulfolobus
          Acidocaldarius Co- Crystallized With Its Ligand
          Length = 453

 Score = 27.3 bits (59), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 14/28 (50%), Positives = 17/28 (60%)

Query: 33 YDYIIIGGGTAGCPLAATLSQNASVLLL 60
          YD +IIGGG AG   A  LS+    +LL
Sbjct: 7  YDVLIIGGGFAGSSAAYQLSRRGLKILL 34


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.136    0.407 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,884,915
Number of Sequences: 62578
Number of extensions: 383939
Number of successful extensions: 1084
Number of sequences better than 100.0: 68
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 1017
Number of HSP's gapped (non-prelim): 86
length of query: 277
length of database: 14,973,337
effective HSP length: 98
effective length of query: 179
effective length of database: 8,840,693
effective search space: 1582484047
effective search space used: 1582484047
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)