Query 045695
Match_columns 277
No_of_seqs 127 out of 1257
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 04:36:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045695.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045695hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02785 Protein HOTHEAD 100.0 1.1E-39 2.3E-44 304.3 27.5 260 17-277 30-299 (587)
2 PF00732 GMC_oxred_N: GMC oxid 100.0 1.7E-36 3.7E-41 262.9 16.7 236 33-277 1-267 (296)
3 KOG1238 Glucose dehydrogenase/ 100.0 2.2E-36 4.7E-41 274.2 15.4 237 26-277 51-327 (623)
4 PRK02106 choline dehydrogenase 100.0 1.1E-33 2.4E-38 264.9 25.2 237 30-277 3-271 (560)
5 TIGR01810 betA choline dehydro 100.0 7.7E-33 1.7E-37 257.9 24.4 233 34-277 1-264 (532)
6 COG2303 BetA Choline dehydroge 100.0 8.6E-32 1.9E-36 249.8 23.3 238 29-277 4-275 (542)
7 TIGR02462 pyranose_ox pyranose 99.9 5.7E-23 1.2E-27 189.1 20.7 230 33-277 1-288 (544)
8 PRK07121 hypothetical protein; 99.7 2E-16 4.3E-21 146.6 17.5 63 203-274 183-245 (492)
9 PRK12845 3-ketosteroid-delta-1 99.7 2.8E-16 6E-21 147.1 16.2 62 203-274 223-284 (564)
10 PRK06481 fumarate reductase fl 99.7 5E-16 1.1E-20 144.1 16.7 61 203-273 196-256 (506)
11 PRK08274 tricarballylate dehyd 99.7 4.8E-16 1E-20 143.1 15.6 63 203-275 137-199 (466)
12 PRK12835 3-ketosteroid-delta-1 99.7 5.5E-16 1.2E-20 145.8 16.1 62 204-274 220-281 (584)
13 COG2081 Predicted flavoprotein 99.7 3.1E-16 6.7E-21 136.1 13.0 166 31-271 2-170 (408)
14 PF00890 FAD_binding_2: FAD bi 99.7 5.8E-16 1.3E-20 140.6 14.7 57 203-269 147-204 (417)
15 PRK12844 3-ketosteroid-delta-1 99.7 2.4E-15 5.3E-20 140.9 17.5 62 203-274 214-275 (557)
16 PRK06175 L-aspartate oxidase; 99.7 2.1E-15 4.5E-20 137.4 16.2 56 203-269 134-190 (433)
17 PRK12837 3-ketosteroid-delta-1 99.7 1.7E-15 3.6E-20 140.8 15.8 58 207-274 184-241 (513)
18 PRK12834 putative FAD-binding 99.6 6.2E-15 1.3E-19 138.2 17.4 35 30-64 2-37 (549)
19 TIGR01813 flavo_cyto_c flavocy 99.6 5.1E-15 1.1E-19 135.3 16.4 63 203-274 136-198 (439)
20 PRK06263 sdhA succinate dehydr 99.6 1.4E-14 3.1E-19 135.6 17.7 58 203-269 140-198 (543)
21 PRK07573 sdhA succinate dehydr 99.6 1.3E-14 2.8E-19 137.8 17.1 55 205-269 178-233 (640)
22 PRK08958 sdhA succinate dehydr 99.6 8.1E-15 1.8E-19 138.1 15.5 58 203-269 149-207 (588)
23 PF03486 HI0933_like: HI0933-l 99.6 4.8E-16 1.1E-20 139.5 6.5 166 33-271 1-169 (409)
24 PTZ00139 Succinate dehydrogena 99.6 1.4E-14 3.1E-19 137.0 16.7 58 203-269 172-230 (617)
25 PRK09078 sdhA succinate dehydr 99.6 1.2E-14 2.5E-19 137.3 15.8 58 203-269 155-213 (598)
26 PRK06452 sdhA succinate dehydr 99.6 1.6E-14 3.6E-19 135.6 16.2 56 203-268 142-198 (566)
27 PLN00128 Succinate dehydrogena 99.6 2E-14 4.4E-19 136.2 16.3 58 203-269 193-251 (635)
28 PLN02815 L-aspartate oxidase 99.6 1.5E-14 3.3E-19 135.9 15.0 61 203-269 161-223 (594)
29 PRK12839 hypothetical protein; 99.6 3.6E-14 7.8E-19 133.2 17.0 63 203-274 220-282 (572)
30 PRK07843 3-ketosteroid-delta-1 99.6 5.5E-14 1.2E-18 131.9 18.2 63 203-275 214-276 (557)
31 PTZ00306 NADH-dependent fumara 99.6 3.2E-14 6.8E-19 143.2 17.4 58 209-271 559-623 (1167)
32 PRK07395 L-aspartate oxidase; 99.6 1.9E-14 4.1E-19 134.6 14.7 56 203-268 140-197 (553)
33 PRK07804 L-aspartate oxidase; 99.6 4.6E-14 1E-18 132.0 17.1 58 203-269 150-211 (541)
34 PRK11101 glpA sn-glycerol-3-ph 99.6 5.4E-14 1.2E-18 131.6 16.2 77 186-274 136-216 (546)
35 PRK08626 fumarate reductase fl 99.6 3.9E-14 8.5E-19 134.8 14.9 57 203-269 164-221 (657)
36 PRK12842 putative succinate de 99.6 1.6E-13 3.5E-18 129.2 18.9 62 203-274 220-281 (574)
37 PRK08071 L-aspartate oxidase; 99.6 9.6E-14 2.1E-18 128.9 16.5 56 203-269 136-191 (510)
38 PRK12843 putative FAD-binding 99.6 1.5E-13 3.3E-18 129.4 17.7 62 203-274 227-288 (578)
39 PRK06134 putative FAD-binding 99.6 2.2E-13 4.8E-18 128.4 18.1 62 203-274 223-284 (581)
40 PRK07057 sdhA succinate dehydr 99.6 1.4E-13 3.1E-18 129.8 16.8 58 203-269 154-212 (591)
41 PRK07803 sdhA succinate dehydr 99.6 8.2E-14 1.8E-18 132.2 14.9 48 212-269 166-214 (626)
42 PRK05945 sdhA succinate dehydr 99.5 1.5E-13 3.3E-18 129.4 16.4 57 203-269 141-198 (575)
43 PRK09077 L-aspartate oxidase; 99.5 2E-13 4.4E-18 127.5 17.1 54 207-269 149-208 (536)
44 PRK09231 fumarate reductase fl 99.5 1.7E-13 3.7E-18 129.1 16.6 52 208-269 145-197 (582)
45 PRK08641 sdhA succinate dehydr 99.5 2.2E-13 4.8E-18 128.5 16.3 50 211-269 151-201 (589)
46 TIGR00551 nadB L-aspartate oxi 99.5 3.1E-13 6.6E-18 125.1 16.4 56 203-269 134-190 (488)
47 PRK06069 sdhA succinate dehydr 99.5 2.5E-13 5.5E-18 128.0 16.0 56 203-268 143-200 (577)
48 TIGR01812 sdhA_frdA_Gneg succi 99.5 3.9E-13 8.5E-18 126.7 17.0 57 203-269 135-192 (566)
49 PRK08205 sdhA succinate dehydr 99.5 3.3E-13 7.2E-18 127.3 15.7 58 203-269 146-207 (583)
50 TIGR01176 fum_red_Fp fumarate 99.5 3E-13 6.5E-18 127.2 15.3 52 208-269 144-196 (580)
51 PRK07512 L-aspartate oxidase; 99.5 3.5E-13 7.6E-18 125.3 14.7 55 203-268 142-197 (513)
52 TIGR01811 sdhA_Bsu succinate d 99.5 6.4E-13 1.4E-17 125.6 15.2 53 208-269 144-197 (603)
53 PRK08275 putative oxidoreducta 99.5 6.1E-13 1.3E-17 124.9 14.8 57 203-268 143-200 (554)
54 PF01266 DAO: FAD dependent ox 99.5 3.4E-13 7.3E-18 119.3 12.4 59 203-277 153-211 (358)
55 TIGR02061 aprA adenosine phosp 99.5 1.7E-12 3.6E-17 122.3 15.1 54 207-269 136-192 (614)
56 PRK04176 ribulose-1,5-biphosph 99.4 4.5E-13 9.7E-18 113.6 9.0 40 27-66 20-60 (257)
57 PRK13800 putative oxidoreducta 99.4 3.7E-12 8.1E-17 125.6 16.7 50 210-269 156-206 (897)
58 PLN02464 glycerol-3-phosphate 99.4 1.3E-12 2.7E-17 124.0 12.8 74 191-274 223-301 (627)
59 PRK06854 adenylylsulfate reduc 99.4 2.8E-12 6E-17 121.4 15.0 56 203-268 138-195 (608)
60 COG0579 Predicted dehydrogenas 99.4 9.8E-12 2.1E-16 111.2 15.9 60 203-277 159-219 (429)
61 PRK11259 solA N-methyltryptoph 99.4 1.5E-11 3.2E-16 110.2 16.8 36 31-66 2-38 (376)
62 TIGR01377 soxA_mon sarcosine o 99.4 2.3E-11 5.1E-16 109.0 16.7 34 33-66 1-35 (380)
63 PRK12409 D-amino acid dehydrog 99.4 1.1E-11 2.3E-16 112.5 13.6 33 33-65 2-35 (410)
64 TIGR00292 thiazole biosynthesi 99.4 3.6E-12 7.7E-17 107.8 9.7 37 30-66 19-56 (254)
65 COG0029 NadB Aspartate oxidase 99.4 1.3E-11 2.9E-16 109.9 13.3 57 203-268 139-196 (518)
66 TIGR02485 CobZ_N-term precorri 99.4 7.4E-12 1.6E-16 114.3 11.9 60 203-274 129-189 (432)
67 PRK12266 glpD glycerol-3-phosp 99.3 3.8E-11 8.3E-16 111.6 16.8 39 29-67 3-42 (508)
68 PRK08401 L-aspartate oxidase; 99.3 2.2E-11 4.8E-16 112.1 15.0 32 33-64 2-34 (466)
69 PRK13369 glycerol-3-phosphate 99.3 2.6E-11 5.7E-16 112.7 15.1 39 29-67 3-42 (502)
70 PF01946 Thi4: Thi4 family; PD 99.3 4.9E-12 1.1E-16 101.9 7.6 37 30-66 15-52 (230)
71 TIGR01373 soxB sarcosine oxida 99.3 9.1E-11 2E-15 106.3 16.4 37 30-66 28-67 (407)
72 TIGR03329 Phn_aa_oxid putative 99.3 3.9E-11 8.5E-16 110.4 14.0 38 29-66 21-61 (460)
73 COG1053 SdhA Succinate dehydro 99.3 2.3E-11 5.1E-16 113.2 12.3 53 207-268 149-202 (562)
74 PTZ00383 malate:quinone oxidor 99.3 5.2E-11 1.1E-15 109.7 14.5 36 30-65 43-81 (497)
75 TIGR01320 mal_quin_oxido malat 99.3 2.1E-10 4.6E-15 105.8 18.3 33 33-65 1-36 (483)
76 PRK11728 hydroxyglutarate oxid 99.3 4.3E-11 9.4E-16 108.0 13.3 35 32-66 2-39 (393)
77 PRK00711 D-amino acid dehydrog 99.3 9.8E-11 2.1E-15 106.3 15.2 32 34-65 2-34 (416)
78 PLN02661 Putative thiazole syn 99.3 2.8E-11 6.1E-16 105.6 10.1 36 30-65 90-127 (357)
79 COG1635 THI4 Ribulose 1,5-bisp 99.3 2.4E-11 5.3E-16 97.5 8.3 37 30-66 28-65 (262)
80 PRK05257 malate:quinone oxidor 99.2 3.2E-10 7E-15 104.8 16.6 36 30-65 3-41 (494)
81 COG0578 GlpA Glycerol-3-phosph 99.2 1.7E-10 3.7E-15 105.4 14.2 56 206-273 173-229 (532)
82 PRK10157 putative oxidoreducta 99.2 1.2E-10 2.6E-15 106.2 11.7 37 31-67 4-41 (428)
83 TIGR03364 HpnW_proposed FAD de 99.2 3.1E-10 6.8E-15 101.3 13.7 34 33-66 1-35 (365)
84 PF12831 FAD_oxidored: FAD dep 99.2 2.6E-11 5.5E-16 110.5 6.0 51 205-266 98-148 (428)
85 COG0644 FixC Dehydrogenases (f 99.2 2.1E-10 4.5E-15 103.6 11.2 37 31-67 2-39 (396)
86 PRK13339 malate:quinone oxidor 99.2 2E-09 4.2E-14 99.2 17.4 34 30-63 4-40 (497)
87 KOG0042 Glycerol-3-phosphate d 99.1 5E-11 1.1E-15 106.8 5.5 67 193-268 217-287 (680)
88 PRK01747 mnmC bifunctional tRN 99.1 6E-10 1.3E-14 107.0 13.2 34 32-65 260-294 (662)
89 PRK10015 oxidoreductase; Provi 99.1 2.4E-10 5.3E-15 104.1 10.0 37 31-67 4-41 (429)
90 COG3573 Predicted oxidoreducta 99.1 4E-09 8.6E-14 89.9 14.9 36 31-66 4-40 (552)
91 KOG1298 Squalene monooxygenase 99.1 5.8E-10 1.3E-14 96.4 9.9 55 206-271 157-211 (509)
92 PRK06185 hypothetical protein; 99.1 2.3E-09 5E-14 97.1 14.2 36 30-65 4-40 (407)
93 TIGR00275 flavoprotein, HI0933 99.1 1.6E-09 3.4E-14 98.0 12.7 32 36-67 1-33 (400)
94 KOG2820 FAD-dependent oxidored 99.1 2.3E-09 5E-14 91.4 11.6 39 29-67 4-43 (399)
95 PRK13977 myosin-cross-reactive 99.0 3.8E-09 8.3E-14 97.7 14.0 63 203-269 232-294 (576)
96 COG0665 DadA Glycine/D-amino a 99.0 9.3E-09 2E-13 92.4 15.8 38 30-67 2-40 (387)
97 PTZ00363 rab-GDP dissociation 99.0 7.8E-09 1.7E-13 94.1 15.1 43 29-71 1-44 (443)
98 PRK08244 hypothetical protein; 99.0 4.6E-09 1E-13 97.6 13.3 35 32-66 2-37 (493)
99 PRK05192 tRNA uridine 5-carbox 99.0 3E-09 6.6E-14 99.2 11.6 35 30-64 2-37 (618)
100 PRK07364 2-octaprenyl-6-methox 99.0 4.7E-09 1E-13 95.3 12.7 39 28-66 14-53 (415)
101 PRK06126 hypothetical protein; 99.0 1.8E-08 4E-13 94.7 17.0 36 30-65 5-41 (545)
102 PLN02985 squalene monooxygenas 99.0 1.5E-08 3.4E-13 94.2 15.9 36 30-65 41-77 (514)
103 TIGR02730 carot_isom carotene 99.0 5.5E-09 1.2E-13 97.1 12.9 73 188-274 220-292 (493)
104 KOG2404 Fumarate reductase, fl 99.0 4E-09 8.6E-14 89.4 10.1 50 210-269 158-207 (477)
105 PRK08773 2-octaprenyl-3-methyl 99.0 9.8E-09 2.1E-13 92.6 13.6 36 30-65 4-40 (392)
106 PF06039 Mqo: Malate:quinone o 99.0 3.5E-08 7.5E-13 88.2 15.7 64 203-277 187-252 (488)
107 TIGR02032 GG-red-SF geranylger 99.0 1.1E-08 2.5E-13 88.1 12.5 34 33-66 1-35 (295)
108 TIGR02023 BchP-ChlP geranylger 98.9 1.4E-08 3E-13 91.6 12.7 31 33-63 1-32 (388)
109 PRK06183 mhpA 3-(3-hydroxyphen 98.9 3.3E-08 7.1E-13 92.9 15.6 37 30-66 8-45 (538)
110 PRK05714 2-octaprenyl-3-methyl 98.9 3.9E-08 8.5E-13 89.1 15.5 34 32-65 2-36 (405)
111 COG1233 Phytoene dehydrogenase 98.9 5.8E-09 1.3E-13 96.6 10.1 38 31-68 2-40 (487)
112 PF13738 Pyr_redox_3: Pyridine 98.9 9.5E-10 2.1E-14 89.9 4.1 54 206-274 91-144 (203)
113 PRK06847 hypothetical protein; 98.9 2.6E-08 5.7E-13 89.1 13.7 37 30-66 2-39 (375)
114 PRK07608 ubiquinone biosynthes 98.9 2.8E-08 6.1E-13 89.4 13.8 37 30-66 3-40 (388)
115 PF01494 FAD_binding_3: FAD bi 98.9 4.5E-09 9.8E-14 92.8 8.2 36 32-67 1-37 (356)
116 PRK08020 ubiF 2-octaprenyl-3-m 98.9 4.7E-08 1E-12 88.1 14.8 36 30-65 3-39 (391)
117 KOG2415 Electron transfer flav 98.9 3.2E-09 7E-14 92.8 6.8 55 205-268 191-256 (621)
118 PRK05675 sdhA succinate dehydr 98.9 2.5E-08 5.3E-13 94.1 13.0 58 203-269 132-190 (570)
119 PRK06184 hypothetical protein; 98.9 6.4E-08 1.4E-12 90.2 15.7 35 32-66 3-38 (502)
120 PRK06834 hypothetical protein; 98.9 3.6E-08 7.7E-13 91.4 13.9 36 31-66 2-38 (488)
121 PRK06467 dihydrolipoamide dehy 98.9 2E-08 4.4E-13 92.7 11.8 35 30-64 2-37 (471)
122 PF01134 GIDA: Glucose inhibit 98.9 9.1E-09 2E-13 91.3 8.9 49 206-269 105-153 (392)
123 PRK07045 putative monooxygenas 98.9 6.2E-08 1.3E-12 87.3 14.5 37 30-66 3-40 (388)
124 PLN02172 flavin-containing mon 98.9 2.2E-08 4.8E-13 91.9 11.6 38 30-67 8-46 (461)
125 PRK08163 salicylate hydroxylas 98.8 4.8E-08 1E-12 88.1 13.1 37 30-66 2-39 (396)
126 PRK07190 hypothetical protein; 98.8 3.3E-08 7.2E-13 91.5 11.5 37 30-66 3-40 (487)
127 PRK08243 4-hydroxybenzoate 3-m 98.8 4.6E-08 1E-12 88.2 12.1 34 32-65 2-36 (392)
128 PRK07333 2-octaprenyl-6-methox 98.8 6.2E-08 1.3E-12 87.6 12.9 33 33-65 2-37 (403)
129 PRK05976 dihydrolipoamide dehy 98.8 8E-08 1.7E-12 88.8 13.8 34 30-63 2-36 (472)
130 COG2072 TrkA Predicted flavopr 98.8 9.5E-08 2.1E-12 87.4 13.9 40 29-68 5-46 (443)
131 TIGR01988 Ubi-OHases Ubiquinon 98.8 1E-07 2.2E-12 85.5 13.8 33 34-66 1-34 (385)
132 PRK08013 oxidoreductase; Provi 98.8 1.1E-07 2.3E-12 86.1 14.0 35 32-66 3-38 (400)
133 TIGR02734 crtI_fam phytoene de 98.8 1.2E-08 2.7E-13 94.9 7.9 72 189-274 211-282 (502)
134 TIGR02028 ChlP geranylgeranyl 98.8 7.7E-08 1.7E-12 87.0 12.8 32 33-64 1-33 (398)
135 PRK07251 pyridine nucleotide-d 98.8 6.8E-08 1.5E-12 88.5 12.5 34 32-65 3-37 (438)
136 PRK09126 hypothetical protein; 98.8 1.4E-07 3E-12 85.0 14.3 35 32-66 3-38 (392)
137 PRK07494 2-octaprenyl-6-methox 98.8 2E-07 4.3E-12 84.0 15.1 36 30-65 5-41 (388)
138 PRK07208 hypothetical protein; 98.8 1E-07 2.2E-12 88.2 13.5 39 30-68 2-41 (479)
139 COG3380 Predicted NAD/FAD-depe 98.8 1.8E-08 4E-13 83.6 7.4 32 34-65 3-35 (331)
140 TIGR01984 UbiH 2-polyprenyl-6- 98.8 1.2E-07 2.6E-12 85.2 13.4 33 34-66 1-35 (382)
141 PRK05249 soluble pyridine nucl 98.8 1.3E-07 2.9E-12 87.1 13.7 35 31-65 4-39 (461)
142 PLN02697 lycopene epsilon cycl 98.8 9.4E-08 2E-12 88.9 12.6 33 31-63 107-140 (529)
143 COG0654 UbiH 2-polyprenyl-6-me 98.8 8.4E-08 1.8E-12 86.5 11.4 32 32-63 2-34 (387)
144 TIGR01424 gluta_reduc_2 glutat 98.7 8.3E-08 1.8E-12 88.1 11.3 32 32-63 2-34 (446)
145 PRK06416 dihydrolipoamide dehy 98.7 8.4E-08 1.8E-12 88.4 11.4 35 30-64 2-37 (462)
146 PRK08849 2-octaprenyl-3-methyl 98.7 2.4E-07 5.3E-12 83.4 14.1 33 32-64 3-36 (384)
147 PRK08132 FAD-dependent oxidore 98.7 3.2E-07 7E-12 86.4 14.9 37 30-66 21-58 (547)
148 PRK07236 hypothetical protein; 98.7 1.9E-07 4.1E-12 84.1 12.8 35 31-65 5-40 (386)
149 PRK07588 hypothetical protein; 98.7 1.8E-07 3.9E-12 84.4 12.5 32 34-65 2-34 (391)
150 PRK11445 putative oxidoreducta 98.7 3.3E-07 7.1E-12 81.5 13.9 34 33-66 2-35 (351)
151 PTZ00367 squalene epoxidase; P 98.7 2.1E-07 4.6E-12 87.4 12.9 34 31-64 32-66 (567)
152 TIGR01816 sdhA_forward succina 98.7 2.7E-07 5.7E-12 87.1 13.5 57 203-269 125-182 (565)
153 TIGR02360 pbenz_hydroxyl 4-hyd 98.7 2.4E-07 5.2E-12 83.6 12.3 34 32-65 2-36 (390)
154 KOG2844 Dimethylglycine dehydr 98.7 1.5E-07 3.2E-12 86.9 10.8 68 186-268 173-243 (856)
155 PRK07818 dihydrolipoamide dehy 98.7 3.4E-07 7.4E-12 84.5 13.3 33 31-63 3-36 (466)
156 PRK06115 dihydrolipoamide dehy 98.7 3.6E-07 7.7E-12 84.4 13.3 32 32-63 3-35 (466)
157 PLN02507 glutathione reductase 98.7 4.8E-07 1E-11 84.1 13.7 34 30-63 23-57 (499)
158 PLN02463 lycopene beta cyclase 98.7 1.6E-07 3.5E-12 85.8 10.2 36 30-65 26-62 (447)
159 PRK06753 hypothetical protein; 98.7 6.7E-07 1.5E-11 80.0 14.1 33 34-66 2-35 (373)
160 PRK06617 2-octaprenyl-6-methox 98.7 5.2E-07 1.1E-11 80.9 13.3 33 33-65 2-35 (374)
161 TIGR01292 TRX_reduct thioredox 98.6 2.4E-07 5.2E-12 80.1 10.8 32 33-64 1-33 (300)
162 PRK08850 2-octaprenyl-6-methox 98.6 7.1E-07 1.5E-11 80.9 14.0 32 32-63 4-36 (405)
163 PF00743 FMO-like: Flavin-bind 98.6 2.4E-08 5.2E-13 93.0 3.7 35 34-68 3-38 (531)
164 TIGR00136 gidA glucose-inhibit 98.6 3.7E-07 8.1E-12 85.3 11.1 33 33-65 1-34 (617)
165 PRK06996 hypothetical protein; 98.6 8.4E-07 1.8E-11 80.2 13.2 36 30-65 9-49 (398)
166 COG1249 Lpd Pyruvate/2-oxoglut 98.6 6.2E-07 1.3E-11 81.8 12.2 35 30-64 2-37 (454)
167 PRK15317 alkyl hydroperoxide r 98.6 5.1E-07 1.1E-11 84.4 11.8 34 30-63 209-243 (517)
168 PRK05868 hypothetical protein; 98.6 1.5E-06 3.3E-11 77.9 14.1 33 34-66 3-36 (372)
169 TIGR01372 soxA sarcosine oxida 98.6 2.3E-06 4.9E-11 85.8 15.9 63 203-276 357-419 (985)
170 TIGR03140 AhpF alkyl hydropero 98.5 8.2E-07 1.8E-11 83.0 12.0 33 30-62 210-243 (515)
171 COG2509 Uncharacterized FAD-de 98.5 1.3E-06 2.7E-11 77.8 12.3 200 26-268 12-230 (486)
172 TIGR03377 glycerol3P_GlpA glyc 98.5 8.7E-07 1.9E-11 82.9 11.9 76 187-274 116-195 (516)
173 KOG1399 Flavin-containing mono 98.5 3.2E-07 6.9E-12 83.3 8.5 37 31-67 5-42 (448)
174 PRK07538 hypothetical protein; 98.5 2.1E-06 4.5E-11 78.1 13.2 33 33-65 1-34 (413)
175 TIGR01989 COQ6 Ubiquinone bios 98.5 2.4E-06 5.1E-11 78.3 13.3 33 33-65 1-38 (437)
176 PF13450 NAD_binding_8: NAD(P) 98.5 1E-07 2.3E-12 63.7 3.1 32 37-68 1-33 (68)
177 PLN00093 geranylgeranyl diphos 98.5 1.4E-07 3.1E-12 86.4 4.8 38 28-65 35-73 (450)
178 PF05834 Lycopene_cycl: Lycope 98.4 1.9E-06 4.2E-11 77.3 11.1 33 34-66 1-36 (374)
179 TIGR01438 TGR thioredoxin and 98.4 5.5E-06 1.2E-10 76.8 14.0 33 32-64 2-35 (484)
180 TIGR03219 salicylate_mono sali 98.4 3.3E-06 7.3E-11 76.7 12.4 33 34-66 2-36 (414)
181 PRK07845 flavoprotein disulfid 98.4 7.3E-06 1.6E-10 75.7 13.3 31 34-64 3-34 (466)
182 PLN02487 zeta-carotene desatur 98.4 3E-05 6.5E-10 73.0 17.0 65 203-273 301-365 (569)
183 PTZ00058 glutathione reductase 98.3 5E-07 1.1E-11 84.8 5.0 34 31-64 47-81 (561)
184 PRK06475 salicylate hydroxylas 98.3 1.1E-05 2.4E-10 73.0 13.3 34 33-66 3-37 (400)
185 PRK06116 glutathione reductase 98.3 4.3E-07 9.3E-12 83.5 4.1 35 30-64 2-37 (450)
186 KOG2853 Possible oxidoreductas 98.3 5.7E-06 1.2E-10 71.1 9.9 38 31-68 85-127 (509)
187 PRK08294 phenol 2-monooxygenas 98.3 1.6E-05 3.5E-10 76.1 14.2 37 30-66 30-68 (634)
188 TIGR03862 flavo_PP4765 unchara 98.3 6.9E-06 1.5E-10 73.2 10.9 88 158-271 56-144 (376)
189 KOG0029 Amine oxidase [Seconda 98.3 6.7E-07 1.4E-11 82.6 4.5 39 30-68 13-52 (501)
190 PRK06370 mercuric reductase; V 98.3 7.2E-07 1.6E-11 82.3 4.7 37 29-65 2-39 (463)
191 PRK09897 hypothetical protein; 98.3 8.8E-06 1.9E-10 75.9 11.7 35 33-67 2-39 (534)
192 TIGR01421 gluta_reduc_1 glutat 98.3 5.9E-07 1.3E-11 82.6 3.9 34 31-64 1-35 (450)
193 PRK08010 pyridine nucleotide-d 98.3 7.7E-07 1.7E-11 81.6 4.1 34 32-65 3-37 (441)
194 PF04820 Trp_halogenase: Trypt 98.2 1.7E-06 3.6E-11 79.5 6.0 34 34-67 1-38 (454)
195 KOG2665 Predicted FAD-dependen 98.2 9.8E-06 2.1E-10 69.0 9.8 42 25-66 41-85 (453)
196 TIGR03452 mycothione_red mycot 98.2 1.1E-05 2.5E-10 74.1 11.2 32 32-64 2-33 (452)
197 COG0445 GidA Flavin-dependent 98.2 4.7E-06 1E-10 75.9 8.0 35 31-65 3-38 (621)
198 KOG4254 Phytoene desaturase [C 98.2 3.5E-06 7.7E-11 74.8 7.0 58 203-274 270-327 (561)
199 TIGR03143 AhpF_homolog putativ 98.2 1.3E-06 2.9E-11 82.2 4.3 36 30-65 2-38 (555)
200 COG0492 TrxB Thioredoxin reduc 98.2 1.4E-06 3E-11 75.6 4.0 56 208-275 190-245 (305)
201 PF13434 K_oxygenase: L-lysine 98.2 7.1E-06 1.5E-10 72.5 8.5 60 203-271 100-160 (341)
202 TIGR02733 desat_CrtD C-3',4' d 98.2 1.7E-06 3.6E-11 80.5 4.3 61 203-273 238-299 (492)
203 COG0562 Glf UDP-galactopyranos 98.2 1.9E-06 4.2E-11 73.4 4.1 36 33-68 2-38 (374)
204 TIGR00031 UDP-GALP_mutase UDP- 98.2 1.9E-06 4.1E-11 76.9 4.3 36 33-68 2-38 (377)
205 KOG2960 Protein involved in th 98.2 1.7E-06 3.8E-11 69.5 3.6 35 32-66 76-113 (328)
206 COG2907 Predicted NAD/FAD-bind 98.2 2.2E-05 4.8E-10 67.7 10.4 41 31-71 7-47 (447)
207 TIGR01350 lipoamide_DH dihydro 98.1 2E-06 4.3E-11 79.3 4.3 32 32-63 1-33 (461)
208 TIGR01790 carotene-cycl lycope 98.1 2.1E-06 4.5E-11 77.3 4.0 32 34-65 1-33 (388)
209 PLN02676 polyamine oxidase 98.1 3.3E-06 7.1E-11 78.3 5.4 57 8-68 6-64 (487)
210 KOG1335 Dihydrolipoamide dehyd 98.1 1.1E-05 2.4E-10 70.4 8.0 35 31-65 38-73 (506)
211 PRK06327 dihydrolipoamide dehy 98.1 2.2E-06 4.7E-11 79.4 4.0 33 30-62 2-35 (475)
212 TIGR02053 MerA mercuric reduct 98.1 2.1E-06 4.6E-11 79.2 3.8 32 33-64 1-33 (463)
213 PF00070 Pyr_redox: Pyridine n 98.1 2.2E-05 4.7E-10 54.2 7.9 32 35-66 2-34 (80)
214 PTZ00052 thioredoxin reductase 98.1 2.5E-06 5.5E-11 79.4 3.9 33 31-63 4-37 (499)
215 PRK14694 putative mercuric red 98.1 2.9E-06 6.2E-11 78.5 4.1 35 30-64 4-39 (468)
216 PRK06292 dihydrolipoamide dehy 98.1 2.6E-06 5.6E-11 78.6 3.8 33 31-63 2-35 (460)
217 PRK07233 hypothetical protein; 98.1 3.2E-06 6.9E-11 77.1 4.1 35 34-68 1-36 (434)
218 PLN02268 probable polyamine ox 98.1 3.3E-06 7.3E-11 77.2 4.2 36 34-69 2-38 (435)
219 PF06100 Strep_67kDa_ant: Stre 98.1 0.00015 3.2E-09 65.9 14.3 61 203-267 213-273 (500)
220 PRK11883 protoporphyrinogen ox 98.1 3.5E-06 7.6E-11 77.3 4.2 35 34-68 2-39 (451)
221 PRK13748 putative mercuric red 98.1 3.4E-06 7.3E-11 79.7 4.1 34 31-64 97-131 (561)
222 TIGR02352 thiamin_ThiO glycine 98.0 2.9E-05 6.4E-10 68.2 9.5 70 187-272 124-196 (337)
223 KOG0405 Pyridine nucleotide-di 98.0 4.7E-05 1E-09 65.8 9.8 35 30-64 18-53 (478)
224 PLN02546 glutathione reductase 98.0 4.1E-06 8.8E-11 78.8 3.6 32 31-62 78-110 (558)
225 PRK05329 anaerobic glycerol-3- 98.0 5E-06 1.1E-10 75.4 3.8 58 203-272 265-322 (422)
226 PLN02576 protoporphyrinogen ox 98.0 7.2E-06 1.6E-10 76.3 5.0 39 30-68 10-50 (496)
227 PRK13512 coenzyme A disulfide 98.0 6E-05 1.3E-09 69.1 10.8 33 34-66 3-38 (438)
228 PTZ00153 lipoamide dehydrogena 98.0 5.2E-06 1.1E-10 79.3 3.9 32 32-63 116-148 (659)
229 PRK05732 2-octaprenyl-6-methox 98.0 6.1E-06 1.3E-10 74.4 3.9 34 31-64 2-39 (395)
230 TIGR03197 MnmC_Cterm tRNA U-34 98.0 0.00011 2.3E-09 66.1 11.9 65 188-268 123-190 (381)
231 PRK10262 thioredoxin reductase 98.0 6.7E-06 1.5E-10 72.2 3.8 60 203-272 191-252 (321)
232 PF07992 Pyr_redox_2: Pyridine 97.9 8.2E-06 1.8E-10 66.3 3.6 32 34-65 1-33 (201)
233 COG3349 Uncharacterized conser 97.9 8.5E-06 1.8E-10 74.0 3.9 35 34-68 2-37 (485)
234 PF13454 NAD_binding_9: FAD-NA 97.9 5.9E-05 1.3E-09 59.1 7.9 30 36-65 1-36 (156)
235 PRK09564 coenzyme A disulfide 97.9 8.7E-05 1.9E-09 68.1 10.2 33 34-66 2-37 (444)
236 COG3634 AhpF Alkyl hydroperoxi 97.9 0.00011 2.3E-09 63.7 9.6 58 207-274 400-458 (520)
237 PLN02568 polyamine oxidase 97.9 1.4E-05 3.1E-10 74.9 4.7 38 31-68 4-47 (539)
238 PRK14727 putative mercuric red 97.9 1.4E-05 3E-10 74.1 4.6 36 30-65 14-50 (479)
239 COG1231 Monoamine oxidase [Ami 97.9 1.4E-05 3.1E-10 71.3 4.2 39 30-68 5-44 (450)
240 PRK05335 tRNA (uracil-5-)-meth 97.9 1.4E-05 3E-10 72.0 4.1 34 33-66 3-37 (436)
241 TIGR00562 proto_IX_ox protopor 97.8 1.6E-05 3.5E-10 73.2 4.3 36 33-68 3-43 (462)
242 TIGR03315 Se_ygfK putative sel 97.8 1.8E-05 3.8E-10 78.5 4.7 37 31-67 536-573 (1012)
243 PLN02927 antheraxanthin epoxid 97.8 2E-05 4.4E-10 75.0 4.9 35 30-64 79-114 (668)
244 TIGR01423 trypano_reduc trypan 97.8 1.4E-05 3E-10 74.1 3.7 33 31-63 2-36 (486)
245 TIGR01789 lycopene_cycl lycope 97.8 1.9E-05 4.1E-10 70.8 4.4 33 34-66 1-36 (370)
246 PRK12416 protoporphyrinogen ox 97.8 1.6E-05 3.5E-10 73.3 4.0 35 34-68 3-44 (463)
247 TIGR02731 phytoene_desat phyto 97.8 2E-05 4.2E-10 72.6 4.2 35 34-68 1-36 (453)
248 PRK12831 putative oxidoreducta 97.8 2.7E-05 5.8E-10 71.9 4.8 37 30-66 138-175 (464)
249 TIGR01350 lipoamide_DH dihydro 97.8 0.00024 5.3E-09 65.5 10.9 33 33-65 171-204 (461)
250 COG3075 GlpB Anaerobic glycero 97.8 2.4E-05 5.1E-10 67.1 3.7 54 206-271 267-320 (421)
251 PRK04965 NADH:flavorubredoxin 97.7 0.00044 9.6E-09 62.1 11.8 33 33-65 142-175 (377)
252 COG1148 HdrA Heterodisulfide r 97.7 2.5E-05 5.3E-10 70.2 3.3 50 19-68 111-161 (622)
253 PRK07846 mycothione reductase; 97.7 4E-05 8.8E-10 70.5 4.5 33 32-65 1-33 (451)
254 TIGR00137 gid_trmFO tRNA:m(5)U 97.7 3.5E-05 7.6E-10 69.7 3.8 33 33-65 1-34 (433)
255 TIGR01316 gltA glutamate synth 97.7 9.1E-05 2E-09 68.1 6.4 37 30-66 131-168 (449)
256 TIGR03378 glycerol3P_GlpB glyc 97.7 4E-05 8.8E-10 69.0 3.7 61 203-275 269-329 (419)
257 COG1232 HemY Protoporphyrinoge 97.6 4.4E-05 9.5E-10 69.3 4.0 35 34-68 2-39 (444)
258 KOG2614 Kynurenine 3-monooxyge 97.6 4.4E-05 9.6E-10 67.4 3.8 36 32-67 2-38 (420)
259 PRK12779 putative bifunctional 97.6 5.2E-05 1.1E-09 75.5 4.6 39 30-68 304-343 (944)
260 PRK07818 dihydrolipoamide dehy 97.6 0.00063 1.4E-08 62.9 11.5 33 33-65 173-206 (466)
261 PLN02328 lysine-specific histo 97.6 6.2E-05 1.3E-09 73.1 4.8 38 31-68 237-275 (808)
262 PRK12810 gltD glutamate syntha 97.6 6.8E-05 1.5E-09 69.4 4.8 37 31-67 142-179 (471)
263 PLN02529 lysine-specific histo 97.6 6.4E-05 1.4E-09 72.5 4.5 38 31-68 159-197 (738)
264 PRK06912 acoL dihydrolipoamide 97.6 5.2E-05 1.1E-09 69.9 3.8 32 34-65 2-34 (458)
265 PRK09754 phenylpropionate diox 97.6 0.00087 1.9E-08 60.6 11.5 33 33-65 145-178 (396)
266 TIGR02732 zeta_caro_desat caro 97.6 6E-05 1.3E-09 69.8 4.0 65 203-273 225-289 (474)
267 PLN02612 phytoene desaturase 97.6 8.6E-05 1.9E-09 70.2 4.7 37 31-67 92-129 (567)
268 TIGR03169 Nterm_to_SelD pyridi 97.5 0.00044 9.6E-09 61.7 8.9 32 34-65 1-36 (364)
269 PRK12769 putative oxidoreducta 97.5 8.6E-05 1.9E-09 71.5 4.5 37 31-67 326-363 (654)
270 PRK12775 putative trifunctiona 97.5 8.4E-05 1.8E-09 74.6 4.5 37 31-67 429-466 (1006)
271 PRK12778 putative bifunctional 97.5 9.5E-05 2.1E-09 72.4 4.8 37 30-66 429-466 (752)
272 PRK11749 dihydropyrimidine deh 97.5 0.00011 2.4E-09 67.7 4.8 37 30-66 138-175 (457)
273 PRK05976 dihydrolipoamide dehy 97.5 0.0012 2.6E-08 61.2 11.7 33 33-65 181-214 (472)
274 PRK09853 putative selenate red 97.5 9.5E-05 2.1E-09 73.3 4.5 38 30-67 537-575 (1019)
275 KOG2852 Possible oxidoreductas 97.5 0.00018 4E-09 60.7 5.2 37 32-68 10-53 (380)
276 TIGR03140 AhpF alkyl hydropero 97.5 0.0016 3.5E-08 61.0 12.2 54 210-273 401-455 (515)
277 PRK06912 acoL dihydrolipoamide 97.5 0.0013 2.9E-08 60.7 11.2 33 33-65 171-204 (458)
278 PRK15317 alkyl hydroperoxide r 97.4 0.0022 4.7E-08 60.2 12.5 55 210-274 400-455 (517)
279 KOG4716 Thioredoxin reductase 97.4 0.0001 2.2E-09 63.6 3.2 37 29-65 16-53 (503)
280 PRK06416 dihydrolipoamide dehy 97.4 0.0013 2.8E-08 60.7 10.9 33 33-65 173-206 (462)
281 PLN02852 ferredoxin-NADP+ redu 97.4 0.00019 4.2E-09 66.3 4.9 38 31-68 25-65 (491)
282 PRK06327 dihydrolipoamide dehy 97.4 0.0019 4.2E-08 59.9 11.6 33 33-65 184-217 (475)
283 PRK12831 putative oxidoreducta 97.4 0.0011 2.3E-08 61.4 9.9 32 33-64 282-314 (464)
284 TIGR02053 MerA mercuric reduct 97.4 0.0014 3E-08 60.6 10.6 33 33-65 167-200 (463)
285 COG1249 Lpd Pyruvate/2-oxoglut 97.4 0.0016 3.4E-08 59.7 10.5 34 33-66 174-208 (454)
286 PRK06370 mercuric reductase; V 97.4 0.0019 4.1E-08 59.7 11.2 33 33-65 172-205 (463)
287 TIGR01318 gltD_gamma_fam gluta 97.4 0.0004 8.7E-09 64.2 6.5 37 31-67 140-177 (467)
288 PTZ00188 adrenodoxin reductase 97.4 0.00027 5.9E-09 64.8 5.2 39 30-68 37-77 (506)
289 PRK12814 putative NADPH-depend 97.4 0.00024 5.2E-09 68.4 5.0 37 31-67 192-229 (652)
290 TIGR01316 gltA glutamate synth 97.3 0.0015 3.3E-08 60.1 10.1 32 33-64 273-305 (449)
291 PRK06567 putative bifunctional 97.3 0.0002 4.2E-09 70.5 4.2 35 30-64 381-416 (1028)
292 PRK12770 putative glutamate sy 97.3 0.00031 6.6E-09 62.6 5.0 37 31-67 17-54 (352)
293 PRK05249 soluble pyridine nucl 97.3 0.002 4.4E-08 59.4 10.6 33 33-65 176-209 (461)
294 PRK07251 pyridine nucleotide-d 97.3 0.0021 4.5E-08 59.0 10.5 33 33-65 158-191 (438)
295 PRK14989 nitrite reductase sub 97.3 0.0021 4.6E-08 63.5 11.0 32 34-65 147-179 (847)
296 PRK06467 dihydrolipoamide dehy 97.3 0.003 6.5E-08 58.5 11.3 33 33-65 175-208 (471)
297 PRK10262 thioredoxin reductase 97.3 0.0063 1.4E-07 53.3 12.8 33 33-65 147-180 (321)
298 TIGR01292 TRX_reduct thioredox 97.3 0.0049 1.1E-07 53.1 11.9 32 33-64 142-174 (300)
299 PRK09564 coenzyme A disulfide 97.3 0.0032 6.9E-08 57.8 11.1 33 33-65 150-183 (444)
300 TIGR01421 gluta_reduc_1 glutat 97.2 0.0028 6E-08 58.4 10.5 34 33-66 167-201 (450)
301 TIGR02374 nitri_red_nirB nitri 97.2 0.0012 2.6E-08 65.0 8.5 32 35-66 1-36 (785)
302 KOG0685 Flavin-containing amin 97.2 0.00029 6.2E-09 63.4 3.8 38 31-68 20-59 (498)
303 PRK06116 glutathione reductase 97.2 0.0026 5.7E-08 58.5 10.3 33 33-65 168-201 (450)
304 PRK12809 putative oxidoreducta 97.2 0.00037 8E-09 67.0 4.7 37 31-67 309-346 (639)
305 PF00996 GDI: GDP dissociation 97.2 0.00024 5.2E-09 64.5 3.2 43 29-71 1-44 (438)
306 PLN03000 amine oxidase 97.2 0.00034 7.3E-09 68.4 4.3 38 31-68 183-221 (881)
307 PRK06115 dihydrolipoamide dehy 97.2 0.0032 6.8E-08 58.3 10.5 33 33-65 175-208 (466)
308 PRK08255 salicylyl-CoA 5-hydro 97.2 0.00029 6.3E-09 69.0 3.7 33 34-66 2-37 (765)
309 PRK07845 flavoprotein disulfid 97.2 0.0033 7.2E-08 58.2 10.5 33 33-65 178-211 (466)
310 TIGR01317 GOGAT_sm_gam glutama 97.2 0.00041 8.9E-09 64.5 4.4 36 31-66 142-178 (485)
311 PLN02507 glutathione reductase 97.2 0.0032 6.9E-08 58.8 10.2 33 33-65 204-237 (499)
312 PRK14727 putative mercuric red 97.2 0.004 8.6E-08 57.8 10.8 31 33-63 189-220 (479)
313 PRK07846 mycothione reductase; 97.2 0.0038 8.2E-08 57.5 10.5 33 33-65 167-200 (451)
314 TIGR01424 gluta_reduc_2 glutat 97.1 0.0032 7E-08 57.9 9.9 33 33-65 167-200 (446)
315 TIGR02374 nitri_red_nirB nitri 97.1 0.0037 8.1E-08 61.5 10.8 32 34-65 142-174 (785)
316 PRK14989 nitrite reductase sub 97.1 0.0022 4.7E-08 63.5 8.9 33 34-66 5-42 (847)
317 PLN02976 amine oxidase 97.1 0.00052 1.1E-08 69.8 4.5 39 30-68 691-730 (1713)
318 PRK08010 pyridine nucleotide-d 97.1 0.0044 9.6E-08 56.9 10.3 32 34-65 160-192 (441)
319 TIGR03385 CoA_CoA_reduc CoA-di 97.1 0.0064 1.4E-07 55.5 11.2 33 33-65 138-171 (427)
320 PRK12771 putative glutamate sy 97.1 0.00058 1.2E-08 64.7 4.2 37 31-67 136-173 (564)
321 PRK13512 coenzyme A disulfide 97.0 0.0077 1.7E-07 55.3 11.2 32 34-65 150-182 (438)
322 PRK13984 putative oxidoreducta 96.9 0.0011 2.4E-08 63.4 4.9 37 31-67 282-319 (604)
323 KOG2311 NAD/FAD-utilizing prot 96.9 0.001 2.3E-08 60.0 4.4 36 28-63 24-60 (679)
324 TIGR03452 mycothione_red mycot 96.9 0.011 2.4E-07 54.5 11.2 33 33-65 170-203 (452)
325 KOG2403 Succinate dehydrogenas 96.9 0.0016 3.4E-08 59.7 4.9 35 32-66 55-90 (642)
326 COG4529 Uncharacterized protei 96.9 0.0051 1.1E-07 55.8 8.2 34 33-66 2-39 (474)
327 PRK06292 dihydrolipoamide dehy 96.8 0.017 3.6E-07 53.4 11.8 33 33-65 170-203 (460)
328 PRK13748 putative mercuric red 96.8 0.0082 1.8E-07 56.9 9.9 31 33-63 271-302 (561)
329 PRK09754 phenylpropionate diox 96.8 0.0013 2.9E-08 59.4 4.2 34 33-66 4-40 (396)
330 PTZ00153 lipoamide dehydrogena 96.8 0.021 4.6E-07 55.0 12.3 33 34-66 314-347 (659)
331 PRK14694 putative mercuric red 96.8 0.011 2.3E-07 54.8 10.1 31 33-63 179-210 (468)
332 COG1252 Ndh NADH dehydrogenase 96.8 0.006 1.3E-07 54.9 8.0 35 32-66 155-203 (405)
333 KOG3855 Monooxygenase involved 96.8 0.0015 3.2E-08 58.0 3.9 36 30-65 34-74 (481)
334 KOG1276 Protoporphyrinogen oxi 96.8 0.0016 3.4E-08 58.1 4.1 39 30-68 9-50 (491)
335 PLN02546 glutathione reductase 96.8 0.012 2.6E-07 55.7 10.2 33 33-65 253-286 (558)
336 PTZ00058 glutathione reductase 96.7 0.013 2.7E-07 55.5 10.3 33 33-65 238-271 (561)
337 TIGR01438 TGR thioredoxin and 96.7 0.014 3E-07 54.3 10.5 30 34-63 182-212 (484)
338 PTZ00318 NADH dehydrogenase-li 96.7 0.0019 4.1E-08 59.0 4.7 37 30-66 8-45 (424)
339 PRK11749 dihydropyrimidine deh 96.7 0.016 3.5E-07 53.4 10.2 32 33-64 274-307 (457)
340 PRK12778 putative bifunctional 96.6 0.011 2.4E-07 58.0 9.4 32 33-64 571-604 (752)
341 PRK12770 putative glutamate sy 96.6 0.016 3.5E-07 51.5 9.7 31 34-64 174-206 (352)
342 TIGR01423 trypano_reduc trypan 96.6 0.02 4.4E-07 53.3 10.1 34 33-66 188-225 (486)
343 TIGR03378 glycerol3P_GlpB glyc 96.5 0.0093 2E-07 54.0 7.3 33 33-65 1-34 (419)
344 PTZ00052 thioredoxin reductase 96.5 0.027 5.7E-07 52.7 10.4 30 34-63 184-214 (499)
345 TIGR03143 AhpF_homolog putativ 96.4 0.057 1.2E-06 51.2 12.5 32 33-64 144-176 (555)
346 PRK04965 NADH:flavorubredoxin 96.4 0.004 8.7E-08 55.9 4.5 60 203-277 189-248 (377)
347 COG0493 GltD NADPH-dependent g 96.4 0.0031 6.8E-08 57.9 3.8 37 32-68 123-160 (457)
348 TIGR01318 gltD_gamma_fam gluta 96.3 0.02 4.3E-07 53.1 8.7 33 33-65 283-317 (467)
349 PF13434 K_oxygenase: L-lysine 96.3 0.042 9.1E-07 48.7 10.4 36 30-65 188-226 (341)
350 PRK12810 gltD glutamate syntha 96.3 0.043 9.4E-07 50.9 10.8 58 207-274 339-407 (471)
351 PRK12769 putative oxidoreducta 96.3 0.035 7.5E-07 53.7 10.3 32 33-64 469-502 (654)
352 COG3486 IucD Lysine/ornithine 96.3 0.045 9.7E-07 48.8 9.9 38 29-66 2-41 (436)
353 KOG1800 Ferredoxin/adrenodoxin 96.3 0.005 1.1E-07 54.2 4.0 36 33-68 21-59 (468)
354 PRK12779 putative bifunctional 96.1 0.056 1.2E-06 54.3 11.0 32 33-64 448-480 (944)
355 PRK12775 putative trifunctiona 96.0 0.056 1.2E-06 54.8 10.5 31 33-63 572-604 (1006)
356 PTZ00318 NADH dehydrogenase-li 95.8 0.09 2E-06 48.0 10.2 32 34-65 175-221 (424)
357 KOG0399 Glutamate synthase [Am 95.7 0.01 2.2E-07 58.9 3.7 38 31-68 1784-1822(2142)
358 KOG1439 RAB proteins geranylge 95.7 0.0085 1.8E-07 53.0 2.8 42 30-71 2-44 (440)
359 COG1206 Gid NAD(FAD)-utilizing 95.6 0.0097 2.1E-07 51.5 3.0 34 33-66 4-38 (439)
360 KOG4405 GDP dissociation inhib 95.6 0.015 3.3E-07 51.6 4.1 42 30-71 6-48 (547)
361 COG0446 HcaD Uncharacterized N 95.6 0.012 2.6E-07 52.9 3.7 36 33-68 137-173 (415)
362 PRK12814 putative NADPH-depend 95.5 0.079 1.7E-06 51.2 9.0 32 33-64 324-357 (652)
363 KOG1336 Monodehydroascorbate/f 95.4 0.11 2.4E-06 47.2 9.0 56 205-273 263-318 (478)
364 KOG3851 Sulfide:quinone oxidor 95.3 0.022 4.8E-07 49.1 4.0 44 27-70 34-80 (446)
365 PRK12809 putative oxidoreducta 95.2 0.1 2.3E-06 50.3 8.7 32 33-64 452-485 (639)
366 PF02558 ApbA: Ketopantoate re 95.1 0.021 4.5E-07 44.1 3.2 30 35-64 1-31 (151)
367 COG5044 MRS6 RAB proteins gera 95.1 0.031 6.6E-07 49.2 4.3 38 31-68 5-43 (434)
368 COG1252 Ndh NADH dehydrogenase 95.1 0.033 7.2E-07 50.2 4.7 36 32-67 3-41 (405)
369 COG0569 TrkA K+ transport syst 95.0 0.024 5.1E-07 47.2 3.4 32 34-65 2-34 (225)
370 KOG0404 Thioredoxin reductase 95.0 0.021 4.5E-07 46.9 2.9 58 206-273 202-260 (322)
371 PRK05329 anaerobic glycerol-3- 95.0 0.079 1.7E-06 48.3 6.9 34 31-64 1-35 (422)
372 PF13738 Pyr_redox_3: Pyridine 94.9 0.03 6.6E-07 45.3 3.8 34 32-65 167-201 (203)
373 KOG2755 Oxidoreductase [Genera 94.8 0.012 2.7E-07 49.2 1.1 33 35-67 2-37 (334)
374 KOG1335 Dihydrolipoamide dehyd 94.7 0.22 4.7E-06 44.3 8.6 49 207-265 262-311 (506)
375 PF01210 NAD_Gly3P_dh_N: NAD-d 94.7 0.027 5.9E-07 44.0 2.8 30 35-64 2-32 (157)
376 PRK05708 2-dehydropantoate 2-r 94.5 0.042 9.1E-07 47.9 3.8 32 33-64 3-35 (305)
377 KOG1336 Monodehydroascorbate/f 94.5 0.12 2.6E-06 47.0 6.6 47 208-273 138-184 (478)
378 PF03721 UDPG_MGDP_dh_N: UDP-g 94.3 0.04 8.8E-07 44.3 3.1 32 34-65 2-34 (185)
379 PRK02705 murD UDP-N-acetylmura 94.3 0.045 9.7E-07 50.5 3.8 33 34-66 2-35 (459)
380 PRK01438 murD UDP-N-acetylmura 94.3 0.044 9.6E-07 50.9 3.7 31 34-64 18-49 (480)
381 PF02737 3HCDH_N: 3-hydroxyacy 94.2 0.047 1E-06 43.7 3.2 31 35-65 2-33 (180)
382 TIGR02733 desat_CrtD C-3',4' d 94.2 0.13 2.8E-06 48.0 6.6 37 32-68 1-38 (492)
383 TIGR03169 Nterm_to_SelD pyridi 93.9 0.62 1.3E-05 41.5 10.1 27 34-60 147-180 (364)
384 PRK06249 2-dehydropantoate 2-r 93.6 0.087 1.9E-06 46.1 4.0 32 33-64 6-38 (313)
385 PRK06129 3-hydroxyacyl-CoA deh 93.5 0.071 1.5E-06 46.6 3.3 31 34-64 4-35 (308)
386 PRK13984 putative oxidoreducta 93.4 0.88 1.9E-05 43.6 10.9 22 33-54 419-441 (604)
387 PF01593 Amino_oxidase: Flavin 93.3 0.053 1.1E-06 48.7 2.3 29 42-70 1-30 (450)
388 PF13241 NAD_binding_7: Putati 93.3 0.074 1.6E-06 38.4 2.6 33 32-64 7-40 (103)
389 TIGR02731 phytoene_desat phyto 93.3 0.22 4.7E-06 45.8 6.3 55 203-266 219-274 (453)
390 PRK12921 2-dehydropantoate 2-r 93.3 0.087 1.9E-06 45.7 3.5 29 34-62 2-31 (305)
391 KOG3923 D-aspartate oxidase [A 93.2 0.082 1.8E-06 45.2 3.0 35 32-66 3-45 (342)
392 PRK12771 putative glutamate sy 93.0 0.61 1.3E-05 44.3 9.0 32 33-64 268-301 (564)
393 PRK06522 2-dehydropantoate 2-r 93.0 0.1 2.2E-06 45.2 3.5 30 34-63 2-32 (304)
394 PRK14106 murD UDP-N-acetylmura 92.8 0.11 2.4E-06 47.7 3.7 32 33-64 6-38 (450)
395 COG0492 TrxB Thioredoxin reduc 92.7 1.4 3E-05 38.5 10.0 33 34-66 145-178 (305)
396 PRK06719 precorrin-2 dehydroge 92.6 0.15 3.4E-06 39.8 3.7 29 33-61 14-43 (157)
397 PRK06718 precorrin-2 dehydroge 92.6 0.14 3.1E-06 41.8 3.7 31 33-63 11-42 (202)
398 TIGR01470 cysG_Nterm siroheme 92.6 0.14 3.1E-06 41.9 3.6 30 34-63 11-41 (205)
399 PRK09260 3-hydroxybutyryl-CoA 92.5 0.14 3E-06 44.2 3.6 31 34-64 3-34 (288)
400 PRK08293 3-hydroxybutyryl-CoA 92.5 0.13 2.8E-06 44.4 3.4 31 34-64 5-36 (287)
401 COG1004 Ugd Predicted UDP-gluc 92.5 0.12 2.7E-06 46.0 3.3 31 34-64 2-33 (414)
402 PF01488 Shikimate_DH: Shikima 92.4 0.14 3E-06 38.9 3.1 32 32-63 12-45 (135)
403 PF02254 TrkA_N: TrkA-N domain 92.3 0.15 3.2E-06 37.3 3.1 31 35-65 1-32 (116)
404 TIGR03315 Se_ygfK putative sel 92.2 1.5 3.3E-05 44.5 10.8 32 33-64 667-701 (1012)
405 TIGR02732 zeta_caro_desat caro 92.2 0.48 1E-05 44.0 7.0 35 34-68 1-36 (474)
406 COG0686 Ald Alanine dehydrogen 92.2 0.14 3.1E-06 44.1 3.2 35 31-65 167-202 (371)
407 PF01262 AlaDh_PNT_C: Alanine 92.1 0.14 3.1E-06 40.4 3.0 33 32-64 20-53 (168)
408 TIGR00518 alaDH alanine dehydr 92.0 0.15 3.4E-06 45.7 3.5 33 32-64 167-200 (370)
409 PRK06567 putative bifunctional 91.8 0.67 1.4E-05 46.5 7.7 33 206-242 649-681 (1028)
410 PRK08229 2-dehydropantoate 2-r 91.8 0.2 4.3E-06 44.3 3.9 31 34-64 4-35 (341)
411 cd01075 NAD_bind_Leu_Phe_Val_D 91.7 0.21 4.6E-06 40.7 3.6 32 33-64 29-61 (200)
412 PRK04148 hypothetical protein; 91.6 0.15 3.3E-06 38.6 2.5 32 33-65 18-50 (134)
413 PRK07819 3-hydroxybutyryl-CoA 91.6 0.18 3.8E-06 43.6 3.2 32 34-65 7-39 (286)
414 TIGR02354 thiF_fam2 thiamine b 91.6 0.24 5.2E-06 40.4 3.8 35 32-66 21-57 (200)
415 PRK07066 3-hydroxybutyryl-CoA 91.5 0.19 4.2E-06 44.1 3.4 31 34-64 9-40 (321)
416 COG1748 LYS9 Saccharopine dehy 91.4 0.21 4.5E-06 44.8 3.6 30 34-63 3-34 (389)
417 cd01080 NAD_bind_m-THF_DH_Cycl 91.2 0.3 6.4E-06 38.7 3.9 33 31-63 43-77 (168)
418 PRK07688 thiamine/molybdopteri 91.0 0.26 5.7E-06 43.6 3.8 34 32-65 24-59 (339)
419 PRK12475 thiamine/molybdopteri 91.0 0.29 6.3E-06 43.3 4.0 35 32-66 24-60 (338)
420 PF00899 ThiF: ThiF family; I 91.0 0.27 5.8E-06 37.2 3.4 34 33-66 3-38 (135)
421 PRK06035 3-hydroxyacyl-CoA deh 90.9 0.25 5.4E-06 42.7 3.5 32 34-65 5-37 (291)
422 PRK07530 3-hydroxybutyryl-CoA 90.8 0.32 6.8E-06 42.1 4.1 31 34-64 6-37 (292)
423 cd00401 AdoHcyase S-adenosyl-L 90.8 0.26 5.6E-06 44.8 3.5 33 33-65 203-236 (413)
424 PRK12549 shikimate 5-dehydroge 90.7 0.27 5.9E-06 42.4 3.5 32 33-64 128-161 (284)
425 PRK15116 sulfur acceptor prote 90.7 0.29 6.3E-06 41.8 3.6 36 32-67 30-67 (268)
426 PRK14620 NAD(P)H-dependent gly 90.5 0.27 5.8E-06 43.2 3.4 31 34-64 2-33 (326)
427 cd05292 LDH_2 A subgroup of L- 90.5 0.3 6.4E-06 42.7 3.6 32 34-65 2-36 (308)
428 cd01483 E1_enzyme_family Super 90.3 0.43 9.2E-06 36.4 4.0 33 35-67 2-36 (143)
429 TIGR01763 MalateDH_bact malate 90.3 0.31 6.6E-06 42.5 3.5 30 34-63 3-34 (305)
430 PRK05808 3-hydroxybutyryl-CoA 90.2 0.28 6E-06 42.2 3.2 31 34-64 5-36 (282)
431 COG1893 ApbA Ketopantoate redu 90.2 0.27 5.9E-06 42.9 3.1 32 34-65 2-34 (307)
432 PRK11064 wecC UDP-N-acetyl-D-m 90.0 0.29 6.3E-06 44.6 3.3 31 34-64 5-36 (415)
433 cd01487 E1_ThiF_like E1_ThiF_l 90.0 0.38 8.2E-06 38.3 3.5 32 35-66 2-35 (174)
434 PRK14618 NAD(P)H-dependent gly 89.9 0.34 7.3E-06 42.7 3.5 31 34-64 6-37 (328)
435 PRK02472 murD UDP-N-acetylmura 89.9 0.32 7E-06 44.7 3.5 31 34-64 7-38 (447)
436 PRK06130 3-hydroxybutyryl-CoA 89.8 0.44 9.5E-06 41.5 4.1 31 34-64 6-37 (311)
437 TIGR03026 NDP-sugDHase nucleot 89.7 0.32 6.9E-06 44.3 3.3 31 34-64 2-33 (411)
438 PRK12548 shikimate 5-dehydroge 89.7 0.36 7.7E-06 41.8 3.4 32 33-64 127-160 (289)
439 TIGR02356 adenyl_thiF thiazole 89.5 0.47 1E-05 38.7 3.9 36 31-66 20-57 (202)
440 PRK00094 gpsA NAD(P)H-dependen 89.5 0.39 8.5E-06 42.0 3.6 31 34-64 3-34 (325)
441 PRK14619 NAD(P)H-dependent gly 89.4 0.47 1E-05 41.4 4.1 33 33-65 5-38 (308)
442 KOG1346 Programmed cell death 89.4 5.6 0.00012 36.1 10.5 61 192-272 253-313 (659)
443 cd05311 NAD_bind_2_malic_enz N 89.3 0.39 8.5E-06 39.9 3.2 33 33-65 26-62 (226)
444 COG3634 AhpF Alkyl hydroperoxi 89.2 0.3 6.5E-06 42.9 2.5 33 33-65 355-388 (520)
445 PRK09424 pntA NAD(P) transhydr 89.1 0.35 7.7E-06 45.1 3.2 34 31-64 164-198 (509)
446 PF00670 AdoHcyase_NAD: S-aden 89.1 0.34 7.4E-06 37.9 2.6 32 34-65 25-57 (162)
447 TIGR02355 moeB molybdopterin s 89.1 0.57 1.2E-05 39.3 4.1 36 32-67 24-61 (240)
448 PLN02545 3-hydroxybutyryl-CoA 88.7 0.51 1.1E-05 40.9 3.7 31 34-64 6-37 (295)
449 PLN02612 phytoene desaturase 88.7 0.94 2E-05 43.1 5.8 51 203-266 314-364 (567)
450 cd05291 HicDH_like L-2-hydroxy 88.7 0.52 1.1E-05 41.1 3.8 32 34-65 2-36 (306)
451 TIGR00936 ahcY adenosylhomocys 88.7 0.49 1.1E-05 42.9 3.7 34 32-65 195-229 (406)
452 TIGR03736 PRTRC_ThiF PRTRC sys 88.5 0.56 1.2E-05 39.4 3.7 36 31-66 10-57 (244)
453 TIGR02853 spore_dpaA dipicolin 88.5 0.47 1E-05 41.0 3.3 33 32-64 151-184 (287)
454 PRK05690 molybdopterin biosynt 88.4 0.59 1.3E-05 39.4 3.8 36 31-66 31-68 (245)
455 PLN02172 flavin-containing mon 88.2 0.46 1E-05 44.0 3.3 33 33-65 205-238 (461)
456 PRK08328 hypothetical protein; 88.2 0.62 1.4E-05 38.9 3.8 35 32-66 27-63 (231)
457 PRK08644 thiamine biosynthesis 88.0 0.66 1.4E-05 38.2 3.7 35 32-66 28-64 (212)
458 PRK05476 S-adenosyl-L-homocyst 87.8 0.62 1.3E-05 42.5 3.8 33 33-65 213-246 (425)
459 PLN02353 probable UDP-glucose 87.7 0.59 1.3E-05 43.4 3.6 30 34-63 3-35 (473)
460 TIGR01915 npdG NADPH-dependent 87.6 0.62 1.3E-05 38.4 3.4 31 34-64 2-34 (219)
461 PRK09496 trkA potassium transp 87.6 0.54 1.2E-05 43.2 3.4 31 34-64 2-33 (453)
462 PLN02520 bifunctional 3-dehydr 87.5 0.59 1.3E-05 44.1 3.6 31 33-63 380-411 (529)
463 cd00757 ThiF_MoeB_HesA_family 87.4 0.65 1.4E-05 38.6 3.4 35 32-66 21-57 (228)
464 PRK08306 dipicolinate synthase 87.3 0.64 1.4E-05 40.4 3.4 33 32-64 152-185 (296)
465 PRK01710 murD UDP-N-acetylmura 87.3 0.66 1.4E-05 42.9 3.7 31 34-64 16-47 (458)
466 PF13478 XdhC_C: XdhC Rossmann 87.1 0.5 1.1E-05 36.0 2.3 32 35-66 1-33 (136)
467 PRK12550 shikimate 5-dehydroge 87.0 0.7 1.5E-05 39.6 3.5 31 34-64 124-156 (272)
468 PLN02494 adenosylhomocysteinas 87.0 0.73 1.6E-05 42.5 3.7 33 33-65 255-288 (477)
469 cd01484 E1-2_like Ubiquitin ac 86.9 0.76 1.6E-05 38.4 3.5 32 35-66 2-35 (234)
470 cd01486 Apg7 Apg7 is an E1-lik 86.8 0.83 1.8E-05 39.6 3.8 34 35-68 2-37 (307)
471 KOG2304 3-hydroxyacyl-CoA dehy 86.8 0.85 1.8E-05 37.7 3.6 36 30-65 9-45 (298)
472 cd01078 NAD_bind_H4MPT_DH NADP 86.7 0.85 1.8E-05 36.8 3.7 32 32-63 28-61 (194)
473 PRK14027 quinate/shikimate deh 86.7 0.74 1.6E-05 39.7 3.5 32 33-64 128-161 (283)
474 COG2072 TrkA Predicted flavopr 86.6 0.81 1.8E-05 42.1 3.9 34 33-66 176-210 (443)
475 TIGR02279 PaaC-3OHAcCoADH 3-hy 86.6 0.74 1.6E-05 43.1 3.7 31 34-64 7-38 (503)
476 TIGR01381 E1_like_apg7 E1-like 86.6 0.73 1.6E-05 44.0 3.6 39 32-70 338-378 (664)
477 TIGR00507 aroE shikimate 5-deh 86.5 0.76 1.6E-05 39.3 3.4 32 33-64 118-150 (270)
478 PRK10669 putative cation:proto 86.5 0.79 1.7E-05 43.5 3.9 34 32-65 417-451 (558)
479 PRK04308 murD UDP-N-acetylmura 86.5 0.82 1.8E-05 42.0 3.9 32 34-65 7-39 (445)
480 cd01339 LDH-like_MDH L-lactate 86.5 0.72 1.6E-05 40.1 3.3 31 35-65 1-33 (300)
481 PRK11730 fadB multifunctional 86.4 0.73 1.6E-05 45.1 3.7 33 33-65 314-347 (715)
482 PRK07417 arogenate dehydrogena 86.4 0.7 1.5E-05 39.7 3.2 31 34-64 2-33 (279)
483 PRK15057 UDP-glucose 6-dehydro 86.3 0.83 1.8E-05 41.3 3.8 31 34-64 2-32 (388)
484 PRK07233 hypothetical protein; 86.2 1.2 2.6E-05 40.4 4.9 56 203-273 204-259 (434)
485 TIGR02437 FadB fatty oxidation 86.2 0.77 1.7E-05 44.9 3.7 32 33-64 314-346 (714)
486 PRK00258 aroE shikimate 5-dehy 86.2 0.78 1.7E-05 39.4 3.4 32 33-64 124-157 (278)
487 TIGR00561 pntA NAD(P) transhyd 86.1 0.81 1.8E-05 42.7 3.6 34 32-65 164-198 (511)
488 cd01485 E1-1_like Ubiquitin ac 85.9 0.86 1.9E-05 37.0 3.3 35 32-66 19-55 (198)
489 PRK07531 bifunctional 3-hydrox 85.9 0.93 2E-05 42.4 4.0 31 34-64 6-37 (495)
490 PRK08017 oxidoreductase; Provi 85.9 0.91 2E-05 37.9 3.6 31 34-64 4-36 (256)
491 PRK05562 precorrin-2 dehydroge 85.7 0.97 2.1E-05 37.5 3.5 32 32-63 25-57 (223)
492 PTZ00082 L-lactate dehydrogena 85.7 1.3 2.7E-05 39.0 4.4 33 33-65 7-41 (321)
493 COG1250 FadB 3-hydroxyacyl-CoA 85.3 0.99 2.1E-05 39.3 3.5 31 34-64 5-36 (307)
494 cd01488 Uba3_RUB Ubiquitin act 85.2 0.96 2.1E-05 39.1 3.4 32 35-66 2-35 (291)
495 PRK08268 3-hydroxy-acyl-CoA de 85.2 0.96 2.1E-05 42.4 3.7 32 34-65 9-41 (507)
496 PRK03369 murD UDP-N-acetylmura 85.2 0.96 2.1E-05 42.2 3.7 30 34-63 14-44 (488)
497 COG1251 NirB NAD(P)H-nitrite r 85.1 2.7 5.8E-05 40.7 6.5 56 206-276 196-251 (793)
498 TIGR01809 Shik-DH-AROM shikima 85.0 0.95 2E-05 39.0 3.3 33 32-64 125-159 (282)
499 cd01490 Ube1_repeat2 Ubiquitin 84.9 0.95 2.1E-05 41.4 3.4 32 35-66 2-40 (435)
500 cd01492 Aos1_SUMO Ubiquitin ac 84.9 1 2.2E-05 36.6 3.3 35 32-66 21-57 (197)
No 1
>PLN02785 Protein HOTHEAD
Probab=100.00 E-value=1.1e-39 Score=304.29 Aligned_cols=260 Identities=61% Similarity=1.075 Sum_probs=210.4
Q ss_pred ccccccCcccCCC----------CCCccEEEECCChhhHHHHhhhhCCCcEEEEcCCCCCCCCCccccchhhhhhcCCCC
Q 045695 17 NYSFMHNATAAQP----------VSYYDYIIIGGGTAGCPLAATLSQNASVLLLERGGSPYGNPNITNLGSFGAALSDLS 86 (277)
Q Consensus 17 ~~~~~~~~~~~~~----------~~~~DviIIGsG~aG~~aA~~La~g~~VlvlE~g~~~~~~~~~~~~~~~~~~~~~~~ 86 (277)
.|+|+.++.+.+. +.+|||||||+|.+|+++|.+|+++.+|||||+|+.+...+.+.....+.....+|.
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IIVG~G~aG~~lA~~Ls~~~~VLllE~G~~~~~~~~~~~~~~~~~~~~d~~ 109 (587)
T PLN02785 30 RYPFIDKASSFSSSSSSSSSSGGDSAYDYIVVGGGTAGCPLAATLSQNFSVLLLERGGVPFGNANVSFLENFHIGLADTS 109 (587)
T ss_pred CCchhhccccccccccccccccccccCCEEEECcCHHHHHHHHHHhcCCcEEEEecCCCCCCCchhhhHHhhCCcccccC
Confidence 4788888777666 568999999999999999999999889999999986433333333333333334677
Q ss_pred CCCccccccCCCceeecCCceecccccccCeeEecCChhhhhcCCCChhhHhhHHHHhhhhcccCCCCchhHHHHHHHHH
Q 045695 87 STSPSQRFISEDGVINSRARVLGGGSCLNAGFYTRAAPYYVRETGWDERLVNESYQWVEKVVAFEPPMRQWQSAVRDGLV 166 (277)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~GG~s~~~~~~~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (277)
+.+.++.+..+++..+.+|++|||+|.+|++.+.|+.++++++.||+++.+.++|.+.|+.+...+...++...+.+.+.
T Consensus 110 ~~~~~q~~~~~~~~~~~rGr~LGGsS~iN~~~y~Rg~~~d~~~~GW~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~a~~ 189 (587)
T PLN02785 110 PTSASQAFISTDGVINARARVLGGGTCINAGFYSRASTRFIQKAGWDAKLVNESYPWVERQIVHWPKVAPWQAALRDSLL 189 (587)
T ss_pred CccccccccCCCceeccccceecchhhhcCeEEEeCCHHHhccCCCCcccccchHHHHhcccccCCCcChHHHHHHHHHH
Confidence 77778877778889999999999999999999999999888888999999999999999866555566778889999999
Q ss_pred HcCCCCCCCccccCCCCeeeeeEEECCCCeeeCHHHHHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCc
Q 045695 167 EVGVLPYNGFTYDHLYGTKIGGTIFDQNGQRHTAADLLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGA 246 (277)
Q Consensus 167 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~ 246 (277)
+.|+++++++..++..+...+..+++..|.|++...+++.+++.|++|++++.|++|++++++ .+.+++||++.+.+|.
T Consensus 190 e~G~~~~n~~~~d~~~G~~~g~~i~~~~g~R~saa~l~~~~~~~nl~Vl~~a~V~rIl~~~~~-~~~ra~GV~~~~~~g~ 268 (587)
T PLN02785 190 EVGVSPFNGFTYDHVYGTKVGGTIFDEFGRRHTAAELLAAGNPNKLRVLLHATVQKIVFDTSG-KRPRATGVIFKDENGN 268 (587)
T ss_pred HcCCCccCCCCCCCccceeeeEEEeCCCCEEcCHHHHHhhcCCCCeEEEeCCEEEEEEEcCCC-CCceEEEEEEEECCCc
Confidence 999988777666666666667777778899998888777778889999999999999998641 1238999999986666
Q ss_pred eEEEEeecCCCcEEEEecCccccHHHHhccC
Q 045695 247 KHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 277 (277)
Q Consensus 247 ~~~i~~~~~~a~~VVlAaG~~~tp~lLl~SG 277 (277)
.+++.++.++++.||||||+++||+|||+||
T Consensus 269 ~~~~~~~~~~~~eVILsAGai~sP~lL~~SG 299 (587)
T PLN02785 269 QHQAFLSNNKGSEIILSAGAIGSPQMLLLSG 299 (587)
T ss_pred eEEEEeecccCceEEecccccCCHHHHHHcC
Confidence 5554322124689999999999999999998
No 2
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=100.00 E-value=1.7e-36 Score=262.95 Aligned_cols=236 Identities=33% Similarity=0.479 Sum_probs=158.8
Q ss_pred ccEEEECCChhhHHHHhhhhC-C-CcEEEEcCCCCCCCCCccccchhhhhhc---CCCCCCCccccccCCCceeecCCce
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-N-ASVLLLERGGSPYGNPNITNLGSFGAAL---SDLSSTSPSQRFISEDGVINSRARV 107 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-g-~~VlvlE~g~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (277)
|||||||||.+|+++|.+|++ + .+|||||+|+....... .........+ .++.+...++....+..+.+.++++
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 79 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYPPEDS-TPPSSFYQDFDSEYDWGYYSGPQPFLNGRTINWPRGKG 79 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCTTSGH-HGGGGGGGCTTTTTBBGEEECEEECTTTTSEEEEEB-S
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCccccc-hhhhccccccCcccccccccccccccccceeeeeccee
Confidence 899999999999999999999 7 79999999988764331 1110011111 1223344455566677778889999
Q ss_pred ecccccccCeeEecCChhhhhc-------CCCChhhHhhHHHHhhhhcc-------------c---CCCCchhHHHHHHH
Q 045695 108 LGGGSCLNAGFYTRAAPYYVRE-------TGWDERLVNESYQWVEKVVA-------------F---EPPMRQWQSAVRDG 164 (277)
Q Consensus 108 ~GG~s~~~~~~~~~~~~~~~~~-------~gw~~~~~~~~~~~~~~~~~-------------~---~~~~~~~~~~~~~~ 164 (277)
|||+|.+|++++.|+.+.+++. .+|.++++.++|+++|.... . .....+....+.+.
T Consensus 80 lGGsS~in~~~~~R~~~~df~~w~~~~g~~~w~~~~l~~~~~~~e~~~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~a 159 (296)
T PF00732_consen 80 LGGSSAINGGVYFRPSPSDFDEWAREFGADGWSWDDLEPYYDKAETFLGPSSDLHGVDGPLPVSSSPPYPSPMNQALMDA 159 (296)
T ss_dssp TTGGGGTS--BE-B--HHHHHHHHHTTTCTTGSHHHHHHHHHHHEEEHTTBGGGSCBSSSEEEHHHCSCHCTHHHHHHHH
T ss_pred cCCcccccccccccCCcccchhhhhcccccccchhhHHHHHHHHHhhccccccccccccccccccccCCCCHHHHHHHHH
Confidence 9999999999999999854432 45899999999999993322 1 12233445778888
Q ss_pred HHHcCCCCCCCccccCCCCeeeeeEEECCCCeeeCHHH-HHh-hcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEe
Q 045695 165 LVEVGVLPYNGFTYDHLYGTKIGGTIFDQNGQRHTAAD-LLE-YANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRD 242 (277)
Q Consensus 165 ~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~l~-~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~ 242 (277)
+.++|++...+.......+....+. .+.+|.|+++.. |++ +.++.|++|+++++|++|+++.++ .+++||++.+
T Consensus 160 ~~~~G~~~~~~~~~~~~~g~~~~~~-~~~~g~r~s~~~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~---~~a~gV~~~~ 235 (296)
T PF00732_consen 160 AEELGIPVPQDFNGCDPCGFCMTGF-NCPNGARSSAATTYLPPALKRPNLTLLTNARVTRIIFDGDG---GRATGVEYVD 235 (296)
T ss_dssp HHHTTHHBCSCTTSSTCSEEEECEE-CECTTCBBHHHHHHHHHHTTTTTEEEEESEEEEEEEEETTS---TEEEEEEEEE
T ss_pred HHHcCCccccccccccccccccccc-cccchhceehhhcccchhhccCCccEEcCcEEEEEeeeccc---cceeeeeeee
Confidence 8899987222211111111111111 357888887755 775 556669999999999999997332 3999999999
Q ss_pred CCCc-eEEEEeecCCCcEEEEecCccccHHHHhccC
Q 045695 243 ATGA-KHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 277 (277)
Q Consensus 243 ~~g~-~~~i~~~~~~a~~VVlAaG~~~tp~lLl~SG 277 (277)
.++. ...+. +++.||||||+++||+|||+||
T Consensus 236 ~~~~~~~~~~----~ak~VIlaAGai~Tp~LLl~SG 267 (296)
T PF00732_consen 236 NDGGVQRRIV----AAKEVILAAGAIGTPRLLLRSG 267 (296)
T ss_dssp TTTSEEEEEE----EEEEEEE-SHHHHHHHHHHHTT
T ss_pred cCCcceeeec----cceeEEeccCCCCChhhhcccc
Confidence 7665 33333 4799999999999999999998
No 3
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=100.00 E-value=2.2e-36 Score=274.17 Aligned_cols=237 Identities=38% Similarity=0.545 Sum_probs=179.5
Q ss_pred cCCCCCCccEEEECCChhhHHHHhhhhC--CCcEEEEcCCCCCCCCCccccchhhhhh----cCCCCCCCccccc----c
Q 045695 26 AAQPVSYYDYIIIGGGTAGCPLAATLSQ--NASVLLLERGGSPYGNPNITNLGSFGAA----LSDLSSTSPSQRF----I 95 (277)
Q Consensus 26 ~~~~~~~~DviIIGsG~aG~~aA~~La~--g~~VlvlE~g~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~----~ 95 (277)
..+...+||+||||||.|||+.|.+|+| ..+|||||+|+.+. ...+++..... ..||.|.+.|++. +
T Consensus 51 ~~~~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~~---~~~~~p~~~~~~q~s~~dw~y~t~Ps~~ac~~m 127 (623)
T KOG1238|consen 51 GSELDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDPP---LYSDPPLLAANLQLSLYDWSYHTEPSQHACLAM 127 (623)
T ss_pred ccccccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCCc---ccccchHHHHHhccccccccCcCccChhhhhhh
Confidence 3345678999999999999999999999 69999999998872 23333333322 2378888888764 7
Q ss_pred CCCceeecCCceecccccccCeeEecCChh----hhhc--CCCChhhHhhHHHHhhhhcccCCCCch-------------
Q 045695 96 SEDGVINSRARVLGGGSCLNAGFYTRAAPY----YVRE--TGWDERLVNESYQWVEKVVAFEPPMRQ------------- 156 (277)
Q Consensus 96 ~~~~~~~~~~~~~GG~s~~~~~~~~~~~~~----~~~~--~gw~~~~~~~~~~~~~~~~~~~~~~~~------------- 156 (277)
.++...|++|+++||+|.+|+|+|.|+.+. |.+. +||+++++.+||++.|....+.+...+
T Consensus 128 ~~~~c~wpRGrVLGGsS~iN~m~Y~RG~r~Dyd~W~~~gnpgW~y~~vl~yf~k~E~~~~~~~~~~~y~~~~g~~~ve~~ 207 (623)
T KOG1238|consen 128 SEDRCYWPRGRVLGGSSVLNAMFYVRGNRRDYDRWAAEGNPGWSYDEVLPYFKKSEDKVVPDPELTPYHGAGGPLLVEAG 207 (623)
T ss_pred cCCceecCccceecccccccceEEecCCccchHHHHHhcCCCCCHHHHHHHHHHHhhccCCCcccCcccccCCcceeccc
Confidence 888999999999999999999999999953 4333 679999999999999987665544332
Q ss_pred -----hHHHHHHHHHHcCCCCCCCccccCCCCeeeeeEE---ECCCCeeeCHHH-HHh-hc-CCCCeEEEcCcEEEEEEE
Q 045695 157 -----WQSAVRDGLVEVGVLPYNGFTYDHLYGTKIGGTI---FDQNGQRHTAAD-LLE-YA-NPSGLTLLLHATVHKVLF 225 (277)
Q Consensus 157 -----~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~---~~~~g~~~~~~~-~l~-~~-~~~gv~i~~~~~V~~l~~ 225 (277)
....+.+...++|.+.+ +.....+.+..+ ...+|.|+++.. |+. .. .++|+.+..++.|++|.+
T Consensus 208 ~~~~~~~~~~~~ag~e~G~~~~-----D~nG~~~tg~~~l~~t~~~g~R~s~~~a~l~~~~~~R~NL~~~~~~~vtrvl~ 282 (623)
T KOG1238|consen 208 VYPNNLFTAFHRAGTEIGGSIF-----DRNGERHTGASLLQYTIRNGIRVSLAKAYLKPIRLTRPNLHISRNAAVTRVLI 282 (623)
T ss_pred cccCchhhHhHHhHHhcCCCcc-----CCCCccccchhhhhccccCCEEEEehhhhhhhhhccCccccccccceEEEEEE
Confidence 23445666666764311 111122222221 236788877755 664 33 378999999999999999
Q ss_pred ecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccccHHHHhccC
Q 045695 226 RIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 277 (277)
Q Consensus 226 ~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~tp~lLl~SG 277 (277)
|..+ .++.||++....++.++++ +.|+|||+||+++||||||.||
T Consensus 283 D~~~---~~a~gv~~~~~~~~~~~v~----a~kEVILSAGAi~SPQLLMLSG 327 (623)
T KOG1238|consen 283 DPAG---KRAKGVEFVRDGGKEHTVK----ARKEVILSAGAINSPQLLMLSG 327 (623)
T ss_pred cCCC---ceEEEEEEEecCceeeeec----ccceEEEeccccCCHHHHHHcC
Confidence 9755 5999999997447888888 6799999999999999999998
No 4
>PRK02106 choline dehydrogenase; Validated
Probab=100.00 E-value=1.1e-33 Score=264.92 Aligned_cols=237 Identities=32% Similarity=0.442 Sum_probs=172.4
Q ss_pred CCCccEEEECCChhhHHHHhhhhC--CCcEEEEcCCCCCC-CCCccccchhhhhhc----CCCCCCCccccccCCCceee
Q 045695 30 VSYYDYIIIGGGTAGCPLAATLSQ--NASVLLLERGGSPY-GNPNITNLGSFGAAL----SDLSSTSPSQRFISEDGVIN 102 (277)
Q Consensus 30 ~~~~DviIIGsG~aG~~aA~~La~--g~~VlvlE~g~~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 102 (277)
..+|||||||||.+|+++|.+|++ |.+|||||+|+... .......+..+...+ .+|.+.+.++++..++.+.+
T Consensus 3 ~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 82 (560)
T PRK02106 3 TMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGPDYRWDFFIQMPAALAFPLQGKRYNWAYETEPEPHMNNRRMEC 82 (560)
T ss_pred CCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCcccCCCcceeCcHHHHHhcCCCceeeceecccCCCCCCCeeec
Confidence 457999999999999999999999 89999999997532 112222222111111 14556666777777777889
Q ss_pred cCCceecccccccCeeEecCChhhhhc-------CCCChhhHhhHHHHhhhhcccC----------------CCCchhHH
Q 045695 103 SRARVLGGGSCLNAGFYTRAAPYYVRE-------TGWDERLVNESYQWVEKVVAFE----------------PPMRQWQS 159 (277)
Q Consensus 103 ~~~~~~GG~s~~~~~~~~~~~~~~~~~-------~gw~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~ 159 (277)
.++++|||+|.+|++++.|+.+.+++. .+|.|+++.|||+++|+..... ....+...
T Consensus 83 ~~g~~lGGsS~iN~~~~~R~~~~Dfd~w~~~~g~~~Ws~~~l~py~~k~E~~~~~~~~~~g~~gp~~~~~~~~~~~~~~~ 162 (560)
T PRK02106 83 PRGKVLGGSSSINGMVYIRGNAMDYDNWAELPGLEGWSYADCLPYFKKAETRDGGEDDYRGGDGPLSVTRGKPGTNPLFQ 162 (560)
T ss_pred ccccccCCCCCccceEEecCCHHHHHHHHhhcCCCCCCHHHHHHHHHHhhccCCCCccccCCCCCEEEeCCCCCCCHHHH
Confidence 999999999999999999999865432 4799999999999999765210 11233456
Q ss_pred HHHHHHHHcCCCCCCCccccCCCCeeeeeEEECCCCeeeCHHH-HHh-hcCCCCeEEEcCcEEEEEEEecCCCCCCeEEE
Q 045695 160 AVRDGLVEVGVLPYNGFTYDHLYGTKIGGTIFDQNGQRHTAAD-LLE-YANPSGLTLLLHATVHKVLFRIKGKARPQAHG 237 (277)
Q Consensus 160 ~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~l~-~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~g 237 (277)
.+.+.+.++|++...+.......++..... .+.+|.|+++.. |++ ..++.|++|++++.|++|+++++ +++|
T Consensus 163 ~~~~a~~~lG~~~~~~~~~~~~~g~~~~~~-~~~~g~R~s~~~~~l~~a~~~~nl~i~~~a~V~rI~~~~~-----~a~G 236 (560)
T PRK02106 163 AFVEAGVQAGYPRTDDLNGYQQEGFGPMDR-TVTNGRRWSAARAYLDPALKRPNLTIVTHALTDRILFEGK-----RAVG 236 (560)
T ss_pred HHHHHHHHcCCCcCCCCCCCCCceeEEEee-ecCCCEEEChHHHhhccccCCCCcEEEcCCEEEEEEEeCC-----eEEE
Confidence 778888889987543322111122221112 235788888765 765 45578999999999999999854 9999
Q ss_pred EEEEeCCCceEEEEeecCCCcEEEEecCccccHHHHhccC
Q 045695 238 VVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 277 (277)
Q Consensus 238 V~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~tp~lLl~SG 277 (277)
|++.+.++ ...+. +++.||||||+++||+|||+||
T Consensus 237 V~~~~~~~-~~~~~----~ak~VILaaGai~TP~LLl~SG 271 (560)
T PRK02106 237 VEYERGGG-RETAR----ARREVILSAGAINSPQLLQLSG 271 (560)
T ss_pred EEEEeCCc-EEEEE----eeeeEEEccCCCCCHHHHhhcC
Confidence 99997443 33433 5899999999999999999998
No 5
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=100.00 E-value=7.7e-33 Score=257.92 Aligned_cols=233 Identities=33% Similarity=0.420 Sum_probs=169.4
Q ss_pred cEEEECCChhhHHHHhhhhC-C-CcEEEEcCCCCCCC-CCccccchhhhhhc----CCCCCCCccccccCCCceeecCCc
Q 045695 34 DYIIIGGGTAGCPLAATLSQ-N-ASVLLLERGGSPYG-NPNITNLGSFGAAL----SDLSSTSPSQRFISEDGVINSRAR 106 (277)
Q Consensus 34 DviIIGsG~aG~~aA~~La~-g-~~VlvlE~g~~~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 106 (277)
||||||||.+|+++|.+|++ + .+|||||+|+.... ......+..+...+ .+|.|.+.++....+..+.+.+++
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~ 80 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGSDYPWDLLIQMPAALAYPAGNKRYNWIYETEPEPHMNNRRVGHARGK 80 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCCCCCCCCcceeCcHHHHHhcCCCCcceeeEcccCCCCCCceEeeeccc
Confidence 89999999999999999999 7 79999999975322 12222221111111 145566677777777888999999
Q ss_pred eecccccccCeeEecCChhhhhc-------CCCChhhHhhHHHHhhhhccc---------------CCCCchhHHHHHHH
Q 045695 107 VLGGGSCLNAGFYTRAAPYYVRE-------TGWDERLVNESYQWVEKVVAF---------------EPPMRQWQSAVRDG 164 (277)
Q Consensus 107 ~~GG~s~~~~~~~~~~~~~~~~~-------~gw~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~ 164 (277)
++||+|.+|++.+.|+.+.+++. .+|.|+++.|||+++|..... .+...+....+.+.
T Consensus 81 ~lGGss~in~~~~~R~~~~d~~~w~~~~g~~~W~~~~l~py~~~~E~~~~~~~~~~g~~G~~~v~~~~~~~~~~~~~~~a 160 (532)
T TIGR01810 81 VLGGSSSINGMIYQRGNPMDYEKWAKPEGMESWDYADCLPYYKRLETTFGGEKPYRGHDGPIKVRRGPADNPLFQAFIEA 160 (532)
T ss_pred ccCCCCCEeeeEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCCCcccCCCCCCEEEecCCCCCHHHHHHHHH
Confidence 99999999999999999854332 479999999999999976531 11123446677888
Q ss_pred HHHcCCCCCCCccccCCCCeeeeeEEECCCCeeeCHHH-HHh-hcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEe
Q 045695 165 LVEVGVLPYNGFTYDHLYGTKIGGTIFDQNGQRHTAAD-LLE-YANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRD 242 (277)
Q Consensus 165 ~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~l~-~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~ 242 (277)
++++|++...+.......++..... .+.+|.|+++.. |++ ..++.|++|+++++|++|+++++ +++||++.+
T Consensus 161 ~~~~G~~~~~~~~~~~~~g~~~~~~-~~~~g~r~s~~~~~l~~a~~r~nl~i~~~~~V~rI~~~~~-----ra~GV~~~~ 234 (532)
T TIGR01810 161 GVEAGYNKTPDVNGFRQEGFGPMDS-TVHNGRRVSAARAYLHPAMKRPNLEVQTRAFVTKINFEGN-----RATGVEFKK 234 (532)
T ss_pred HHHcCCCccCCCCCCCccceEEEEE-EcCCCEEEcHHHHHhhhhccCCCeEEEeCCEEEEEEecCC-----eEEEEEEEe
Confidence 8899987543322111112221111 235788888765 665 44578999999999999999854 999999986
Q ss_pred CCCceEEEEeecCCCcEEEEecCccccHHHHhccC
Q 045695 243 ATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 277 (277)
Q Consensus 243 ~~g~~~~i~~~~~~a~~VVlAaG~~~tp~lLl~SG 277 (277)
. +....+. +++.||||||+++||+||++||
T Consensus 235 ~-~~~~~~~----~ak~VIlaAGai~SP~LLl~SG 264 (532)
T TIGR01810 235 G-GRKEHTE----ANKEVILSAGAINSPQLLQLSG 264 (532)
T ss_pred C-CcEEEEE----EeeeEEEccCCCCCHHHHHhcC
Confidence 3 3434443 5799999999999999999998
No 6
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=100.00 E-value=8.6e-32 Score=249.79 Aligned_cols=238 Identities=29% Similarity=0.376 Sum_probs=178.3
Q ss_pred CCCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCCCCccccchhhhhhc----CCCCCCCccccccCCCceeec
Q 045695 29 PVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYGNPNITNLGSFGAAL----SDLSSTSPSQRFISEDGVINS 103 (277)
Q Consensus 29 ~~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 103 (277)
+..+||+||||||.+|+++|.+|++ |.+|+|||+|+..... .+..+..+...+ .+|.+...++++...+.+.+.
T Consensus 4 ~~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~~~~~~-~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~ 82 (542)
T COG2303 4 MKMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGGPDRRP-LIQMPAAYAFLMNGPRYDWGFRTEPEPHLRGRELAWP 82 (542)
T ss_pred ccCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCCCCCcc-ceecchhHhhhccCcccCCccccCcccCCCCcccccc
Confidence 4578999999999999999999999 9999999999753321 223333333222 257777778888888899999
Q ss_pred CCceecccccccCeeEecCChhhhhc-------CCCChhhHhhHHHHhhhhcccC--------C-----------CCchh
Q 045695 104 RARVLGGGSCLNAGFYTRAAPYYVRE-------TGWDERLVNESYQWVEKVVAFE--------P-----------PMRQW 157 (277)
Q Consensus 104 ~~~~~GG~s~~~~~~~~~~~~~~~~~-------~gw~~~~~~~~~~~~~~~~~~~--------~-----------~~~~~ 157 (277)
+++++||+|.+|++.+.|+.+.+|+. .+|+|++++|||++.|...... . ...+.
T Consensus 83 rgk~lGGsS~ing~~~~R~~~~Df~~w~~~~G~~~W~y~d~lPyf~~aE~~~~~~g~~~~~~~g~~gp~~~~~~~~~~~~ 162 (542)
T COG2303 83 RGKVLGGSSSINGMVYVRGHPEDFDAWAQESGAPGWPYDDVLPYFKRAEDLLGVGGQDLRTWHGGGGPLPVSPPRSPNPI 162 (542)
T ss_pred ccCcccchhhhccceeecCCHHHHHHHHhhcCCCCCCccccHHHHHHHHhhcCCCCCCCCCCcCCCCCccccCCCCchHH
Confidence 99999999999999999999976532 5699999999999999744431 1 11234
Q ss_pred HHHHHHHHHHcCCCCCCCccccCCCCeeeeeEEECCCCeeeCHHH-HHh-hcCCCCeEEEcCcEEEEEEEecCCCCCCeE
Q 045695 158 QSAVRDGLVEVGVLPYNGFTYDHLYGTKIGGTIFDQNGQRHTAAD-LLE-YANPSGLTLLLHATVHKVLFRIKGKARPQA 235 (277)
Q Consensus 158 ~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~l~-~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v 235 (277)
...+.+...++|++...++.-....+......+. .+|.+++... ++. ..++.|++|++++.|++|+++.+ ++
T Consensus 163 ~~a~~~a~~~~G~~~~~~~~~~~~~g~g~~~~~~-~~g~r~sa~~a~l~~a~~~~nl~v~t~a~v~ri~~~~~-----r~ 236 (542)
T COG2303 163 ARAFIEAGEQLGFPTTPDPNGADQEGFGPYCVTI-CNGRRWSAARAYLKPALKRPNLTLLTGARVRRILLEGD-----RA 236 (542)
T ss_pred HHHHHHHHHHcCCCcCcccccCCCCCcccceeec-cCCeEeechhhcchhHhcCCceEEecCCEEEEEEEECC-----ee
Confidence 5667777788888755443322222222222233 3788887765 665 67888999999999999999998 99
Q ss_pred EEEEEEeCCCc-eEEEEeecCCCcEEEEecCccccHHHHhccC
Q 045695 236 HGVVFRDATGA-KHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 277 (277)
Q Consensus 236 ~gV~~~~~~g~-~~~i~~~~~~a~~VVlAaG~~~tp~lLl~SG 277 (277)
++|++...++. .+... +++.||||||+++||+|||+||
T Consensus 237 ~gv~~~~~~~~~~~~~~----a~~~viL~AGai~Sp~LL~~Sg 275 (542)
T COG2303 237 VGVEVEIGDGGTIETAV----AAREVVLAAGAINSPKLLLLSG 275 (542)
T ss_pred EEEEEEeCCCCceEEEe----cCceEEEeccccCCHHHHHhcC
Confidence 99999864432 23333 6899999999999999999997
No 7
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=99.91 E-value=5.7e-23 Score=189.06 Aligned_cols=230 Identities=19% Similarity=0.180 Sum_probs=141.4
Q ss_pred ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCCCCccc----------cchhhhhhcC----CC-------C-CCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYGNPNIT----------NLGSFGAALS----DL-------S-STS 89 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~~~~~~----------~~~~~~~~~~----~~-------~-~~~ 89 (277)
|||||||+|++|+++|+.|++ |.+|+|||++........-. ....+...+. .. . ...
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFLKIGAHKKNEIEYQKDIDKFVNVIKGALQSVSVPVSNLVIPTL 80 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCCcccccccccccccccHHHHHHHHhhhccccccccccCCcCCC
Confidence 799999999999999999999 99999999997654311100 0011111111 00 0 000
Q ss_pred -------cc-ccccCC------Cc---e-eecCCceecccccccCeeEecCChhhhh--cCCCC--hhhHhhHHHHhhhh
Q 045695 90 -------PS-QRFISE------DG---V-INSRARVLGGGSCLNAGFYTRAAPYYVR--ETGWD--ERLVNESYQWVEKV 147 (277)
Q Consensus 90 -------~~-~~~~~~------~~---~-~~~~~~~~GG~s~~~~~~~~~~~~~~~~--~~gw~--~~~~~~~~~~~~~~ 147 (277)
.+ ..++.+ +. + ...+.+.+||+|++|++.++|..+.... ..+|+ ++++.|||.++++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~R~vGGsS~hW~g~~~R~~p~~r~g~~~dWPI~y~eL~PyY~~Ae~~ 160 (544)
T TIGR02462 81 DPTAWSASIESFFVSNGKNPEQDPFRNLSGEAVTRGVGGMSTHWTCATPRFHREERPKLSDDAAEDDAEWDRLYTKAESL 160 (544)
T ss_pred CccccccCCCcceecCCCCcccCchhccChhheeeccCchhhhcCcccCCCCHHhccCCCCCCCCCHHHHHHHHHHHHHH
Confidence 00 111111 11 1 1355688999999999999999984221 14687 68999999999999
Q ss_pred cccCCCCc--hh-HHHHHHHH-HHc-CC-CCCCCccccCCCCeeeeeEEECCCCeeeCHH-HHH-----hhcCCCCeEEE
Q 045695 148 VAFEPPMR--QW-QSAVRDGL-VEV-GV-LPYNGFTYDHLYGTKIGGTIFDQNGQRHTAA-DLL-----EYANPSGLTLL 215 (277)
Q Consensus 148 ~~~~~~~~--~~-~~~~~~~~-~~~-G~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~l-----~~~~~~gv~i~ 215 (277)
+.+.+... +. .....+.+ +++ |. ..... +.. |... -+..+.+++.. ..+ ..++..+++|+
T Consensus 161 ~gv~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--PlA---~~~~---~c~~~ak~s~~~t~~~~~~~~~~~~~n~~l~ 232 (544)
T TIGR02462 161 IGTSTDQFDESIRHNLVLRKLQDEYKGQRDFQPL--PLA---CHRR---TDPTYVEWHSADTVFDLQPNDDAPSERFTLL 232 (544)
T ss_pred hCCCCCcCCCcccchhHHHHHHHHhccccccccC--chh---hhcc---CCCccceecCCccchhhhhhhhccCCCEEEE
Confidence 88765321 11 11111111 222 22 11100 000 1000 01223344322 222 22346789999
Q ss_pred cCcEEEEEEEecCCCCCCeEEEEEEEeC-CCceEEEEeecCCCcEEEEecCccccHHHHhccC
Q 045695 216 LHATVHKVLFRIKGKARPQAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 277 (277)
Q Consensus 216 ~~~~V~~l~~~~~~~~~~~v~gV~~~~~-~g~~~~i~~~~~~a~~VVlAaG~~~tp~lLl~SG 277 (277)
+++.|++|+.|+++ ..+|++|++.|. +++.+++. |+.||||||+++||+|||+|+
T Consensus 233 ~~a~v~~i~~d~~~--~~~v~~v~~~d~~~g~~~~v~-----A~~vVLAagaIetpRLLL~S~ 288 (544)
T TIGR02462 233 TNHRCTRLVRNETN--ESEIEAALVRDLLSGDRFEIK-----ADVYVLACGAVHNPQILVNSG 288 (544)
T ss_pred cCCEEEEEEeCCCC--CceeEEEEEEECCCCcEEEEE-----CCEEEEccCchhhHHHHHhCC
Confidence 99999999998641 128999999986 57777776 789999999999999999996
No 8
>PRK07121 hypothetical protein; Validated
Probab=99.72 E-value=2e-16 Score=146.55 Aligned_cols=63 Identities=16% Similarity=0.302 Sum_probs=50.0
Q ss_pred HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccccHHHHh
Q 045695 203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLM 274 (277)
Q Consensus 203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~tp~lLl 274 (277)
+...+++.|++|+++++|++|+.++++ +|+||++.+ +++.+.+. +++.||||+|++....-|+
T Consensus 183 L~~~~~~~gv~i~~~~~v~~l~~~~~g----~v~Gv~~~~-~~~~~~i~----a~k~VVlAtGg~~~N~em~ 245 (492)
T PRK07121 183 LAKRAAALGVQIRYDTRATRLIVDDDG----RVVGVEARR-YGETVAIR----ARKGVVLAAGGFAMNREMV 245 (492)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEECCCC----CEEEEEEEe-CCcEEEEE----eCCEEEECCCCcCcCHHHH
Confidence 445677789999999999999998654 999999975 55566665 3489999999998765554
No 9
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.71 E-value=2.8e-16 Score=147.06 Aligned_cols=62 Identities=11% Similarity=0.211 Sum_probs=48.8
Q ss_pred HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccccHHHHh
Q 045695 203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLM 274 (277)
Q Consensus 203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~tp~lLl 274 (277)
|...+++.|++|++++.|++|+.+++ +|+||.+.+ +++.+.+. +++.||||||||....-|+
T Consensus 223 L~~~~~~~Gv~i~~~t~v~~Li~~~g-----~V~GV~~~~-~g~~~~i~----a~kaVILAtGGf~~n~em~ 284 (564)
T PRK12845 223 LFAGVLRAGIPIWTETSLVRLTDDGG-----RVTGAVVDH-RGREVTVT----ARRGVVLAAGGFDHDMEMR 284 (564)
T ss_pred HHHHHHHCCCEEEecCEeeEEEecCC-----EEEEEEEEE-CCcEEEEE----cCCEEEEecCCccccHHHH
Confidence 44456678999999999999997644 999999875 55555665 5689999999999875443
No 10
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.70 E-value=5e-16 Score=144.12 Aligned_cols=61 Identities=18% Similarity=0.306 Sum_probs=47.9
Q ss_pred HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccccHHHH
Q 045695 203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLL 273 (277)
Q Consensus 203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~tp~lL 273 (277)
+...+++.|++|+++++|++|+.+++ +|+||++...+++...+. ++.||||+|+|..+.-|
T Consensus 196 L~~~~~~~gv~i~~~t~v~~l~~~~g-----~V~Gv~~~~~~g~~~~i~-----a~~VVlAtGG~~~n~~m 256 (506)
T PRK06481 196 LLKNVQERKIPLFVNADVTKITEKDG-----KVTGVKVKINGKETKTIS-----SKAVVVTTGGFGANKDM 256 (506)
T ss_pred HHHHHHHcCCeEEeCCeeEEEEecCC-----EEEEEEEEeCCCeEEEEe-----cCeEEEeCCCcccCHHH
Confidence 45566678999999999999987654 999999976444555564 69999999999876444
No 11
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.69 E-value=4.8e-16 Score=143.15 Aligned_cols=63 Identities=19% Similarity=0.237 Sum_probs=50.6
Q ss_pred HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccccHHHHhc
Q 045695 203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLML 275 (277)
Q Consensus 203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~tp~lLl~ 275 (277)
+...+++.|++|+++++|++|+.+++ +|+||++.+.+++...+. ++.||||+|++..++.|++
T Consensus 137 l~~~~~~~gv~i~~~t~v~~l~~~~g-----~v~gv~~~~~~g~~~~i~-----a~~VIlAtGg~~~n~~~~~ 199 (466)
T PRK08274 137 LYRSAERLGVEIRYDAPVTALELDDG-----RFVGARAGSAAGGAERIR-----AKAVVLAAGGFESNREWLR 199 (466)
T ss_pred HHHHHHHCCCEEEcCCEEEEEEecCC-----eEEEEEEEccCCceEEEE-----CCEEEECCCCCCCCHHHHH
Confidence 55566778999999999999998765 999999865456555665 6899999999998876654
No 12
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.69 E-value=5.5e-16 Score=145.81 Aligned_cols=62 Identities=16% Similarity=0.246 Sum_probs=49.9
Q ss_pred HhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccccHHHHh
Q 045695 204 LEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLM 274 (277)
Q Consensus 204 l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~tp~lLl 274 (277)
...+++.|++|++++.|++|+.|+++ +|+||.+.+ +++.+.+. +++.||||||+|....-|+
T Consensus 220 ~~~~~~~gv~i~~~~~~~~Li~d~~g----~V~Gv~~~~-~~~~~~i~----a~~aVilAtGGf~~N~em~ 281 (584)
T PRK12835 220 RLALKDAGVPLWLDSPMTELITDPDG----AVVGAVVER-EGRTLRIG----ARRGVILATGGFDHDMDWR 281 (584)
T ss_pred HHHHHhCCceEEeCCEEEEEEECCCC----cEEEEEEEe-CCcEEEEE----eceeEEEecCcccCCHHHH
Confidence 34667789999999999999998665 999999975 66666776 3457999999999865554
No 13
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.69 E-value=3.1e-16 Score=136.13 Aligned_cols=166 Identities=20% Similarity=0.294 Sum_probs=108.5
Q ss_pred CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCCCCccccchhhhhhcCCCCCCCccccccCCCceeecCCceec
Q 045695 31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYGNPNITNLGSFGAALSDLSSTSPSQRFISEDGVINSRARVLG 109 (277)
Q Consensus 31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 109 (277)
+.+||||||+|++|+.+|..+++ |.+|+|+|+++....+-.+ -
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~------------------------------------s 45 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILM------------------------------------S 45 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEe------------------------------------c
Confidence 46899999999999999999999 9999999999887543321 1
Q ss_pred ccccccCeeEecCChhhhhcCCCChhhHhhHHHHhhhhcccCCCCchh-HHHHHHHHHHcCCCCCCCccccCCCCeeeee
Q 045695 110 GGSCLNAGFYTRAAPYYVRETGWDERLVNESYQWVEKVVAFEPPMRQW-QSAVRDGLVEVGVLPYNGFTYDHLYGTKIGG 188 (277)
Q Consensus 110 G~s~~~~~~~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~ 188 (277)
|++.+|...... ..++..+.+-.-..+.+ ....| ++.+++++..+|++-. ....+
T Consensus 46 GgGrCN~Tn~~~-~~~~ls~~p~~~~fl~s-------------al~~ft~~d~i~~~e~~Gi~~~----------e~~~G 101 (408)
T COG2081 46 GGGRCNFTNSEA-PDEFLSRNPGNGHFLKS-------------ALARFTPEDFIDWVEGLGIALK----------EEDLG 101 (408)
T ss_pred CCCCcccccccc-HHHHHHhCCCcchHHHH-------------HHHhCCHHHHHHHHHhcCCeeE----------EccCc
Confidence 233333332211 11122210000111111 12233 4677788888888632 12344
Q ss_pred EEECCCCeeeCHHH-HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCcc
Q 045695 189 TIFDQNGQRHTAAD-LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGAL 267 (277)
Q Consensus 189 ~~~~~~g~~~~~~~-~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~ 267 (277)
..||.....++... ++..+++.||+|+++++|.++..++. +..+...+|+ ++. ++.+|||+||.
T Consensus 102 r~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~--------~f~l~t~~g~--~i~-----~d~lilAtGG~ 166 (408)
T COG2081 102 RMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDS--------GFRLDTSSGE--TVK-----CDSLILATGGK 166 (408)
T ss_pred eecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCc--------eEEEEcCCCC--EEE-----ccEEEEecCCc
Confidence 56665444444444 66788889999999999999999885 5666655665 444 59999999998
Q ss_pred ccHH
Q 045695 268 GSPQ 271 (277)
Q Consensus 268 ~tp~ 271 (277)
..|+
T Consensus 167 S~P~ 170 (408)
T COG2081 167 SWPK 170 (408)
T ss_pred CCCC
Confidence 8885
No 14
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=99.68 E-value=5.8e-16 Score=140.63 Aligned_cols=57 Identities=23% Similarity=0.395 Sum_probs=44.8
Q ss_pred HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceEEEEeecCCCcEEEEecCcccc
Q 045695 203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS 269 (277)
Q Consensus 203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~i~~~~~~a~~VVlAaG~~~t 269 (277)
+...+++.+++|++++.|++|+.+++ +|+||++.+ .+++.+++. ++.||||||++..
T Consensus 147 l~~~~~~~gv~i~~~~~~~~Li~e~g-----~V~Gv~~~~~~~g~~~~i~-----A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 147 LAKAAEEAGVDIRFNTRVTDLITEDG-----RVTGVVAENPADGEFVRIK-----AKAVILATGGFGG 204 (417)
T ss_dssp HHHHHHHTTEEEEESEEEEEEEEETT-----EEEEEEEEETTTCEEEEEE-----ESEEEE----BGG
T ss_pred HHHHHhhcCeeeeccceeeeEEEeCC-----ceeEEEEEECCCCeEEEEe-----eeEEEeccCcccc
Confidence 44566778899999999999999876 999999995 467777776 5799999999998
No 15
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.67 E-value=2.4e-15 Score=140.90 Aligned_cols=62 Identities=18% Similarity=0.327 Sum_probs=50.1
Q ss_pred HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccccHHHHh
Q 045695 203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLM 274 (277)
Q Consensus 203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~tp~lLl 274 (277)
+...+++.|++|++++.|++|+.+++ +|+||++.. +++.+.+. +++.||||||++..+.-|+
T Consensus 214 l~~~~~~~gv~i~~~~~v~~Li~~~g-----~v~Gv~~~~-~g~~~~i~----A~~aVIlAtGG~~~N~em~ 275 (557)
T PRK12844 214 MLEAALAAGVPLWTNTPLTELIVEDG-----RVVGVVVVR-DGREVLIR----ARRGVLLASGGFGHNAEMR 275 (557)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEEeCC-----EEEEEEEEE-CCeEEEEE----ecceEEEecCCccCCHHHH
Confidence 34566778999999999999998865 999999975 56666676 3468999999999875554
No 16
>PRK06175 L-aspartate oxidase; Provisional
Probab=99.67 E-value=2.1e-15 Score=137.36 Aligned_cols=56 Identities=14% Similarity=0.300 Sum_probs=43.5
Q ss_pred HHhhc-CCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCcccc
Q 045695 203 LLEYA-NPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGS 269 (277)
Q Consensus 203 ~l~~~-~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~t 269 (277)
++..+ ++.|++|++++.|++|+.+++ +|+||.+.+ +++.+.+. ++.||||+|++..
T Consensus 134 L~~~~~~~~gV~i~~~t~v~~Li~~~~-----~v~Gv~~~~-~g~~~~i~-----Ak~VILAtGG~~~ 190 (433)
T PRK06175 134 LLKKVKKRKNITIIENCYLVDIIENDN-----TCIGAICLK-DNKQINIY-----SKVTILATGGIGG 190 (433)
T ss_pred HHHHHHhcCCCEEEECcEeeeeEecCC-----EEEEEEEEE-CCcEEEEE-----cCeEEEccCcccc
Confidence 44434 456999999999999998765 999988765 45545565 6899999999764
No 17
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=99.67 E-value=1.7e-15 Score=140.84 Aligned_cols=58 Identities=16% Similarity=0.273 Sum_probs=46.3
Q ss_pred cCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccccHHHHh
Q 045695 207 ANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLM 274 (277)
Q Consensus 207 ~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~tp~lLl 274 (277)
.++.|++|+++++|++|+.+++ +|+||++.. +++.+.+. +++.||||||++....-|+
T Consensus 184 ~~~~gv~i~~~t~~~~Li~~~g-----~v~Gv~~~~-~g~~~~i~----A~k~VIlAtGG~~~n~~m~ 241 (513)
T PRK12837 184 ARFPNARLRLNTPLVELVVEDG-----RVVGAVVER-GGERRRVR----ARRGVLLAAGGFEQNDDMR 241 (513)
T ss_pred HhCCCCEEEeCCEEEEEEecCC-----EEEEEEEEE-CCcEEEEE----eCceEEEeCCCccCCHHHH
Confidence 3446999999999999998754 999999875 56666776 3468999999998765444
No 18
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=99.65 E-value=6.2e-15 Score=138.21 Aligned_cols=35 Identities=37% Similarity=0.516 Sum_probs=33.3
Q ss_pred CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695 30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (277)
Q Consensus 30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~ 64 (277)
+.++||||||+|.+|++||+++++ |.+|+||||+.
T Consensus 2 ~~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~ 37 (549)
T PRK12834 2 AMDADVIVVGAGLAGLVAAAELADAGKRVLLLDQEN 37 (549)
T ss_pred CccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 468999999999999999999999 99999999997
No 19
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.65 E-value=5.1e-15 Score=135.33 Aligned_cols=63 Identities=19% Similarity=0.346 Sum_probs=48.8
Q ss_pred HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccccHHHHh
Q 045695 203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLM 274 (277)
Q Consensus 203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~tp~lLl 274 (277)
+...+++.|++|+++++|++|+.++++ +|+||++.+.+++.+.+ +++.||||+|++....-|+
T Consensus 136 l~~~~~~~gv~i~~~~~v~~l~~~~~g----~v~Gv~~~~~~g~~~~~-----~a~~VVlAtGg~~~n~~m~ 198 (439)
T TIGR01813 136 LYKKAKKEGIDTRLNSKVEDLIQDDQG----TVVGVVVKGKGKGIYIK-----AAKAVVLATGGFGSNKEMI 198 (439)
T ss_pred HHHHHHHcCCEEEeCCEeeEeEECCCC----cEEEEEEEeCCCeEEEE-----ecceEEEecCCCCCCHHHH
Confidence 445667789999999999999997654 89999998744443344 3699999999998754443
No 20
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.63 E-value=1.4e-14 Score=135.56 Aligned_cols=58 Identities=22% Similarity=0.412 Sum_probs=47.0
Q ss_pred HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceEEEEeecCCCcEEEEecCcccc
Q 045695 203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS 269 (277)
Q Consensus 203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~i~~~~~~a~~VVlAaG~~~t 269 (277)
+...+.+.|++|++++.|++|+.++++ +|+||.+.+ .++..+.+. ++.|||||||+..
T Consensus 140 L~~~~~~~gv~i~~~t~v~~Li~~~~~----~v~Gv~~~~~~~g~~~~i~-----AkaVIlATGG~~~ 198 (543)
T PRK06263 140 LMEYLIKERIKILEEVMAIKLIVDENR----EVIGAIFLDLRNGEIFPIY-----AKATILATGGAGQ 198 (543)
T ss_pred HHHHHhcCCCEEEeCeEeeeeEEeCCc----EEEEEEEEECCCCcEEEEE-----cCcEEECCCCCCC
Confidence 445566689999999999999998763 699999887 566666665 6999999999864
No 21
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.63 E-value=1.3e-14 Score=137.77 Aligned_cols=55 Identities=16% Similarity=0.336 Sum_probs=45.4
Q ss_pred hhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeC-CCceEEEEeecCCCcEEEEecCcccc
Q 045695 205 EYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGS 269 (277)
Q Consensus 205 ~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~-~g~~~~i~~~~~~a~~VVlAaG~~~t 269 (277)
..+++.|++|++++.|++|+.+++ +|+||.+.+. ++..+.+. ++.|||||||++.
T Consensus 178 ~~~~~~gV~i~~~t~v~~Li~d~g-----~V~GV~~~~~~~g~~~~i~-----AkaVVLATGG~g~ 233 (640)
T PRK07573 178 RQIAAGTVKMYTRTEMLDLVVVDG-----RARGIVARNLVTGEIERHT-----ADAVVLATGGYGN 233 (640)
T ss_pred HHHHhcCCEEEeceEEEEEEEeCC-----EEEEEEEEECCCCcEEEEE-----CCEEEECCCCccc
Confidence 356678999999999999998765 9999999874 46555664 7899999999875
No 22
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.62 E-value=8.1e-15 Score=138.06 Aligned_cols=58 Identities=14% Similarity=0.099 Sum_probs=46.8
Q ss_pred HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceEEEEeecCCCcEEEEecCcccc
Q 045695 203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS 269 (277)
Q Consensus 203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~i~~~~~~a~~VVlAaG~~~t 269 (277)
+...+.+.|+++++++.|++|+.++++ +|+||.+.+ .+++.+.+. ++.|||||||++.
T Consensus 149 L~~~~~~~gi~i~~~~~~~~Li~~~~g----~v~Gv~~~~~~~g~~~~i~-----AkaVILATGG~~~ 207 (588)
T PRK08958 149 LYQQNLKNHTTIFSEWYALDLVKNQDG----AVVGCTAICIETGEVVYFK-----ARATVLATGGAGR 207 (588)
T ss_pred HHHHhhhcCCEEEeCcEEEEEEECCCC----EEEEEEEEEcCCCcEEEEE-----cCeEEECCCCccc
Confidence 445566789999999999999987554 999999975 356666665 6999999999874
No 23
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.62 E-value=4.8e-16 Score=139.51 Aligned_cols=166 Identities=23% Similarity=0.344 Sum_probs=82.9
Q ss_pred ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCCCCccccchhhhhhcCCCCCCCccccccCCCceeecCCceeccc
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYGNPNITNLGSFGAALSDLSSTSPSQRFISEDGVINSRARVLGGG 111 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~ 111 (277)
|||||||+|++|+.||+.|++ |.+|+||||+.....+-. ..|+
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil-----------------------------------~tG~- 44 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKIL-----------------------------------ITGN- 44 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHH-----------------------------------HCGG-
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCccccccee-----------------------------------ecCC-
Confidence 899999999999999999999 999999999977643111 1122
Q ss_pred ccccCeeEecCCh-hhhhcCCCChhhHhhHHHHhhhhcccCCCCchhHHHHHHHHHHcCCCCCCCccccCCCCeeeeeEE
Q 045695 112 SCLNAGFYTRAAP-YYVRETGWDERLVNESYQWVEKVVAFEPPMRQWQSAVRDGLVEVGVLPYNGFTYDHLYGTKIGGTI 190 (277)
Q Consensus 112 s~~~~~~~~~~~~-~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~ 190 (277)
+.+|..-. .... ++....+-..+.+.+.+... ....+.+.+.++|++... ...+.+
T Consensus 45 GrCN~tn~-~~~~~~~~~~~~~~~~f~~~~l~~f------------~~~d~~~ff~~~Gv~~~~----------~~~gr~ 101 (409)
T PF03486_consen 45 GRCNLTNL-NIDPSEFLSGYGRNPKFLKSALKRF------------SPEDLIAFFEELGVPTKI----------EEDGRV 101 (409)
T ss_dssp GT-EEEET-TSSGGGEECS-TBTTTCTHHHHHHS-------------HHHHHHHHHHTT--EEE-----------STTEE
T ss_pred CCcccccc-ccchhhHhhhcccchHHHHHHHhcC------------CHHHHHHHHHhcCCeEEE----------cCCCEE
Confidence 22221110 0111 11111000111111111111 124566777888875211 112234
Q ss_pred ECCCCeeeCHHH-HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCcccc
Q 045695 191 FDQNGQRHTAAD-LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGS 269 (277)
Q Consensus 191 ~~~~g~~~~~~~-~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~t 269 (277)
|+...+..+... ++..+++.|++|+++++|.+|..+++ .+..|+.. +++ .+. ++.||||+|+...
T Consensus 102 fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~-----~~f~v~~~--~~~--~~~-----a~~vILAtGG~S~ 167 (409)
T PF03486_consen 102 FPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKED-----GVFGVKTK--NGG--EYE-----ADAVILATGGKSY 167 (409)
T ss_dssp EETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETT-----EEEEEEET--TTE--EEE-----ESEEEE----SSS
T ss_pred CCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCC-----ceeEeecc--Ccc--ccc-----CCEEEEecCCCCc
Confidence 444333334433 66677888999999999999999887 77777772 333 343 5999999999877
Q ss_pred HH
Q 045695 270 PQ 271 (277)
Q Consensus 270 p~ 271 (277)
|+
T Consensus 168 p~ 169 (409)
T PF03486_consen 168 PK 169 (409)
T ss_dssp GG
T ss_pred cc
Confidence 75
No 24
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=99.62 E-value=1.4e-14 Score=137.01 Aligned_cols=58 Identities=16% Similarity=0.297 Sum_probs=46.4
Q ss_pred HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceEEEEeecCCCcEEEEecCcccc
Q 045695 203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS 269 (277)
Q Consensus 203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~i~~~~~~a~~VVlAaG~~~t 269 (277)
+...+.+.|++|++++.+++|+.++++ +|.||.+.+ .+++.+.+. ++.|||||||++.
T Consensus 172 L~~~a~~~gv~i~~~~~~~~Li~~~~g----~v~Gv~~~~~~~g~~~~i~-----AkaVVLATGG~~~ 230 (617)
T PTZ00139 172 LYGQSLKYDCNFFIEYFALDLIMDEDG----ECRGVIAMSMEDGSIHRFR-----AHYTVIATGGYGR 230 (617)
T ss_pred HHHHHHhCCCEEEeceEEEEEEECCCC----EEEEEEEEECCCCeEEEEE-----CCcEEEeCCCCcc
Confidence 445566689999999999999985444 999999876 356666665 7899999999864
No 25
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.62 E-value=1.2e-14 Score=137.34 Aligned_cols=58 Identities=17% Similarity=0.313 Sum_probs=47.0
Q ss_pred HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceEEEEeecCCCcEEEEecCcccc
Q 045695 203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS 269 (277)
Q Consensus 203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~i~~~~~~a~~VVlAaG~~~t 269 (277)
+...+.+.|++|++++.|++|+.++++ +|+||.+.+ .+++.+.+. ++.|||||||++.
T Consensus 155 L~~~~~~~gi~i~~~~~v~~Li~~~~g----~v~Gv~~~~~~~g~~~~i~-----AkaVVLATGG~~~ 213 (598)
T PRK09078 155 LYQQSLKHNAEFFIEYFALDLIMDDGG----VCRGVVAWNLDDGTLHRFR-----AHMVVLATGGYGR 213 (598)
T ss_pred HHHHHhhcCCEEEEeEEEEEEEEcCCC----EEEEEEEEECCCCcEEEEE-----cCEEEECCCCCcc
Confidence 445566689999999999999998644 999999875 456666665 6899999999875
No 26
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.61 E-value=1.6e-14 Score=135.56 Aligned_cols=56 Identities=14% Similarity=0.162 Sum_probs=45.1
Q ss_pred HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeC-CCceEEEEeecCCCcEEEEecCccc
Q 045695 203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALG 268 (277)
Q Consensus 203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~-~g~~~~i~~~~~~a~~VVlAaG~~~ 268 (277)
+...+.+.|++|++++.+++|+.+++ +|+||.+.+. +++.+.+. ++.|||||||++
T Consensus 142 L~~~~~~~gv~i~~~~~~~~Li~~~g-----~v~Gv~~~~~~~g~~~~i~-----AkaVVLATGG~~ 198 (566)
T PRK06452 142 LFERTSGLNVDFYNEWFSLDLVTDNK-----KVVGIVAMQMKTLTPFFFK-----TKAVVLATGGMG 198 (566)
T ss_pred HHHHHHhCCCEEEeCcEEEEEEEECC-----EEEEEEEEECCCCeEEEEE-----eCeEEECCCccc
Confidence 44445557999999999999999865 9999999874 45555554 699999999987
No 27
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=99.61 E-value=2e-14 Score=136.15 Aligned_cols=58 Identities=19% Similarity=0.326 Sum_probs=46.6
Q ss_pred HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeC-CCceEEEEeecCCCcEEEEecCcccc
Q 045695 203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGS 269 (277)
Q Consensus 203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~-~g~~~~i~~~~~~a~~VVlAaG~~~t 269 (277)
+...+.+.|++|++++.+++|+.++++ +|.||.+.+. +|+.+.+. ++.|||||||++.
T Consensus 193 L~~~a~~~gv~i~~~~~~~~Li~~~~g----~v~Gv~~~~~~~g~~~~i~-----AkaVILATGG~g~ 251 (635)
T PLN00128 193 LYGQAMKHNTQFFVEYFALDLIMDSDG----ACQGVIALNMEDGTLHRFR-----AHSTILATGGYGR 251 (635)
T ss_pred HHHHHHhCCCEEEEeeEEEEEEEcCCC----EEEEEEEEEcCCCeEEEEE-----cCeEEECCCCCcc
Confidence 444555679999999999999987544 9999999763 56666665 7999999999875
No 28
>PLN02815 L-aspartate oxidase
Probab=99.60 E-value=1.5e-14 Score=135.85 Aligned_cols=61 Identities=26% Similarity=0.346 Sum_probs=44.6
Q ss_pred HHhhc-CCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceEEEEeecCCCcEEEEecCcccc
Q 045695 203 LLEYA-NPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS 269 (277)
Q Consensus 203 ~l~~~-~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~i~~~~~~a~~VVlAaG~~~t 269 (277)
+...+ ++.|++|++++.+++|+.++++ +..+|+||.+.+ .++..+.+. ++.|||||||++.
T Consensus 161 L~~~~~~~~~i~i~~~~~~~~Li~~~~g-~~~~v~Gv~~~~~~~g~~~~i~-----AkaVILATGG~g~ 223 (594)
T PLN02815 161 LLEAVKNDPNITFFEHHFAIDLLTSQDG-GSIVCHGADVLDTRTGEVVRFI-----SKVTLLASGGAGH 223 (594)
T ss_pred HHHHHHhcCCCEEEeceEhheeeeecCC-CccEEEEEEEEEcCCCeEEEEE-----eceEEEcCCccee
Confidence 44433 4469999999999999987542 011499999975 356656665 6999999999863
No 29
>PRK12839 hypothetical protein; Provisional
Probab=99.60 E-value=3.6e-14 Score=133.19 Aligned_cols=63 Identities=17% Similarity=0.260 Sum_probs=48.9
Q ss_pred HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccccHHHHh
Q 045695 203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLM 274 (277)
Q Consensus 203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~tp~lLl 274 (277)
++..+.+.|++|++++.|++|+.++++ +|+||++.+.++. ..+. +++.||||||+|....-|+
T Consensus 220 L~~~a~~~Gv~i~~~t~v~~Li~~~~g----~V~GV~~~~~~g~-~~i~----aak~VVLAtGGf~~n~~~~ 282 (572)
T PRK12839 220 LLRSADDLGVDLRVSTSATSLTTDKNG----RVTGVRVQGPDGA-VTVE----ATRGVVLATGGFPNDVDRR 282 (572)
T ss_pred HHHHHHHCCCEEEcCCEEEEEEECCCC----cEEEEEEEeCCCc-EEEE----eCCEEEEcCCCcccCHHHH
Confidence 445567789999999999999987554 9999999875554 3444 4689999999999855443
No 30
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.60 E-value=5.5e-14 Score=131.89 Aligned_cols=63 Identities=14% Similarity=0.257 Sum_probs=50.1
Q ss_pred HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccccHHHHhc
Q 045695 203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLML 275 (277)
Q Consensus 203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~tp~lLl~ 275 (277)
+.+.+++.|++|++++.|++|+.+++ +|+||++.. +++.+.+. +++.||||||+|...+-|+.
T Consensus 214 L~~~~~~~gv~v~~~t~v~~l~~~~g-----~v~Gv~~~~-~g~~~~i~----A~~~VIlAtGG~~~n~~m~~ 276 (557)
T PRK07843 214 LRIGLQRAGVPVLLNTPLTDLYVEDG-----RVTGVHAAE-SGEPQLIR----ARRGVILASGGFEHNEQMRA 276 (557)
T ss_pred HHHHHHcCCCEEEeCCEEEEEEEeCC-----EEEEEEEEe-CCcEEEEE----eceeEEEccCCcCcCHHHHH
Confidence 34456778999999999999998765 999999975 56666676 34579999999999766653
No 31
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.60 E-value=3.2e-14 Score=143.17 Aligned_cols=58 Identities=19% Similarity=0.381 Sum_probs=45.5
Q ss_pred CCCeEEEcCcEEEEEEEecC----CCCCCeEEEEEEEeC---CCceEEEEeecCCCcEEEEecCccccHH
Q 045695 209 PSGLTLLLHATVHKVLFRIK----GKARPQAHGVVFRDA---TGAKHRAYLKNGPKNEIIVSAGALGSPQ 271 (277)
Q Consensus 209 ~~gv~i~~~~~V~~l~~~~~----~~~~~~v~gV~~~~~---~g~~~~i~~~~~~a~~VVlAaG~~~tp~ 271 (277)
+.|++|++++.|++|+.+++ |+...+|+||++.+. +|+.+.+. +|.||||||||....
T Consensus 559 ~~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~-----AkaVILATGGf~~N~ 623 (1167)
T PTZ00306 559 SGRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLL-----ADAVILATGGFSNDH 623 (1167)
T ss_pred cCCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEEE-----eceEEEecCCcccCc
Confidence 36999999999999999752 111138999999975 56666665 699999999999864
No 32
>PRK07395 L-aspartate oxidase; Provisional
Probab=99.60 E-value=1.9e-14 Score=134.57 Aligned_cols=56 Identities=16% Similarity=0.287 Sum_probs=43.4
Q ss_pred HHhhc-CCCCeEEEcCcEEEEEEEec-CCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccc
Q 045695 203 LLEYA-NPSGLTLLLHATVHKVLFRI-KGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALG 268 (277)
Q Consensus 203 ~l~~~-~~~gv~i~~~~~V~~l~~~~-~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~ 268 (277)
+...+ ++.|++|++++.|++|+.++ ++ +|+||.+.+ ++..+.+. ++.|||||||++
T Consensus 140 L~~~~~~~~gi~i~~~~~v~~Li~~~~~g----~v~Gv~~~~-~g~~~~i~-----AkaVILATGG~~ 197 (553)
T PRK07395 140 LTEQVLQRPNIEIISQALALSLWLEPETG----RCQGISLLY-QGQITWLR-----AGAVILATGGGG 197 (553)
T ss_pred HHHHHhhcCCcEEEECcChhhheecCCCC----EEEEEEEEE-CCeEEEEE-----cCEEEEcCCCCc
Confidence 44434 45699999999999999875 34 999999875 56555554 699999999975
No 33
>PRK07804 L-aspartate oxidase; Provisional
Probab=99.59 E-value=4.6e-14 Score=131.96 Aligned_cols=58 Identities=19% Similarity=0.228 Sum_probs=44.3
Q ss_pred HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeC----CCceEEEEeecCCCcEEEEecCcccc
Q 045695 203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDA----TGAKHRAYLKNGPKNEIIVSAGALGS 269 (277)
Q Consensus 203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~----~g~~~~i~~~~~~a~~VVlAaG~~~t 269 (277)
|...+++.++++++++.|++|+.++++ +|.||.+.+. ++....+. ++.||||+|++..
T Consensus 150 L~~~~~~~gV~i~~~~~v~~Li~~~~g----~v~Gv~~~~~~~~~~~g~~~i~-----Ak~VIlATGG~~~ 211 (541)
T PRK07804 150 LDAAVRADPLDIREHALALDLLTDGTG----AVAGVTLHVLGEGSPDGVGAVH-----APAVVLATGGLGQ 211 (541)
T ss_pred HHHHHHhCCCEEEECeEeeeeEEcCCC----eEEEEEEEeccCCCCCcEEEEE-----cCeEEECCCCCCC
Confidence 445666678999999999999987654 9999998731 22234454 6999999999763
No 34
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.58 E-value=5.4e-14 Score=131.64 Aligned_cols=77 Identities=19% Similarity=0.204 Sum_probs=54.1
Q ss_pred eeeEEECCCCeeeCHHH---HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeC-CCceEEEEeecCCCcEEE
Q 045695 186 IGGTIFDQNGQRHTAAD---LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDA-TGAKHRAYLKNGPKNEII 261 (277)
Q Consensus 186 ~~~~~~~~~g~~~~~~~---~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~-~g~~~~i~~~~~~a~~VV 261 (277)
.++.+++ +|+-.+... +...+.+.|++++++++|++|..+++ +++||++.+. +++...+. ++.||
T Consensus 136 ~ga~~~~-dg~vdp~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~~-----~v~gv~v~d~~~g~~~~i~-----A~~VV 204 (546)
T PRK11101 136 IGAVKVP-DGTVDPFRLTAANMLDAKEHGAQILTYHEVTGLIREGD-----TVCGVRVRDHLTGETQEIH-----APVVV 204 (546)
T ss_pred eEEEEec-CcEECHHHHHHHHHHHHHhCCCEEEeccEEEEEEEcCC-----eEEEEEEEEcCCCcEEEEE-----CCEEE
Confidence 3444444 565433322 33456778999999999999998776 8999999763 34445665 69999
Q ss_pred EecCccccHHHHh
Q 045695 262 VSAGALGSPQLLM 274 (277)
Q Consensus 262 lAaG~~~tp~lLl 274 (277)
+|||.+ +.+|+.
T Consensus 205 nAaG~w-a~~l~~ 216 (546)
T PRK11101 205 NAAGIW-GQHIAE 216 (546)
T ss_pred ECCChh-HHHHHH
Confidence 999984 565543
No 35
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=99.57 E-value=3.9e-14 Score=134.79 Aligned_cols=57 Identities=18% Similarity=0.195 Sum_probs=47.0
Q ss_pred HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceEEEEeecCCCcEEEEecCcccc
Q 045695 203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS 269 (277)
Q Consensus 203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~i~~~~~~a~~VVlAaG~~~t 269 (277)
+...+.+.|++|+.++.|++|+.+++ +|.||.+.+ .+|+.+.+. ++.|||||||++.
T Consensus 164 L~~~~~~~gv~i~~~~~~~~Li~~~g-----~v~Gv~~~~~~~G~~~~i~-----AkaVVLATGG~g~ 221 (657)
T PRK08626 164 VDNEAIKLGVPVHDRKEAIALIHDGK-----RCYGAVVRCLITGELRAYV-----AKATLIATGGYGR 221 (657)
T ss_pred HHHHHHhCCCEEEeeEEEEEEEEECC-----EEEEEEEEEcCCCcEEEEE-----cCeEEECCCcccC
Confidence 34456678999999999999998765 999999987 467666665 6999999999874
No 36
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=99.57 E-value=1.6e-13 Score=129.25 Aligned_cols=62 Identities=16% Similarity=0.237 Sum_probs=47.7
Q ss_pred HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccccHHHHh
Q 045695 203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLM 274 (277)
Q Consensus 203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~tp~lLl 274 (277)
+...+++.|++|++++.|++|+.+++ +|+||++.+.+ ....+. +++.||||+|++....-|+
T Consensus 220 L~~~~~~~Gv~i~~~~~v~~l~~~~g-----~V~GV~~~~~~-~~~~i~----a~k~VVlAtGg~~~n~~~~ 281 (574)
T PRK12842 220 LAKSALDLGIPILTGTPARELLTEGG-----RVVGARVIDAG-GERRIT----ARRGVVLACGGFSHDLARI 281 (574)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEeeCC-----EEEEEEEEcCC-ceEEEE----eCCEEEEcCCCccchHHHH
Confidence 34456778999999999999998865 99999998633 334454 3468999999998665554
No 37
>PRK08071 L-aspartate oxidase; Provisional
Probab=99.57 E-value=9.6e-14 Score=128.92 Aligned_cols=56 Identities=21% Similarity=0.399 Sum_probs=44.5
Q ss_pred HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCcccc
Q 045695 203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGS 269 (277)
Q Consensus 203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~t 269 (277)
+...+. .|++|++++.|++|+.+++ +|.||.+.+.+++.+.+. ++.||||||++..
T Consensus 136 L~~~~~-~gV~i~~~~~v~~Li~~~g-----~v~Gv~~~~~~g~~~~i~-----Ak~VVlATGG~~~ 191 (510)
T PRK08071 136 LLQELV-PHVTVVEQEMVIDLIIENG-----RCIGVLTKDSEGKLKRYY-----ADYVVLASGGCGG 191 (510)
T ss_pred HHHHHh-cCCEEEECeEhhheeecCC-----EEEEEEEEECCCcEEEEE-----cCeEEEecCCCcc
Confidence 334444 6999999999999998765 999999987556655665 6999999999874
No 38
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=99.56 E-value=1.5e-13 Score=129.42 Aligned_cols=62 Identities=16% Similarity=0.283 Sum_probs=49.8
Q ss_pred HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccccHHHHh
Q 045695 203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLM 274 (277)
Q Consensus 203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~tp~lLl 274 (277)
|+..+++.|++|++++.|++|+.+++ +|+||.+.+ +++.+.+. +++.||||||++....-|+
T Consensus 227 L~~~~~~~Gv~i~~~t~v~~Li~~~g-----~V~GV~~~~-~g~~~~i~----A~~~VVlAtGg~~~n~em~ 288 (578)
T PRK12843 227 LLYSLRARGVRILTQTDVESLETDHG-----RVIGATVVQ-GGVRRRIR----ARGGVVLATGGFNRHPQLR 288 (578)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEeeCC-----EEEEEEEec-CCeEEEEE----ccceEEECCCCcccCHHHH
Confidence 45566778999999999999998755 999999875 56666665 4578999999999875554
No 39
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=99.56 E-value=2.2e-13 Score=128.40 Aligned_cols=62 Identities=18% Similarity=0.265 Sum_probs=48.4
Q ss_pred HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccccHHHHh
Q 045695 203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLM 274 (277)
Q Consensus 203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~tp~lLl 274 (277)
+...+++.|++|+++++|++|+.+++ +|+||++.+ ++..+.+. +++.||||+|++....-|+
T Consensus 223 L~~~a~~~Gv~i~~~t~v~~l~~~~g-----~v~GV~~~~-~~~~~~i~----a~k~VVlAtGg~~~n~~~~ 284 (581)
T PRK06134 223 LLKSAEDLGVRIWESAPARELLREDG-----RVAGAVVET-PGGLQEIR----ARKGVVLAAGGFPHDPARR 284 (581)
T ss_pred HHHHHHhCCCEEEcCCEEEEEEEeCC-----EEEEEEEEE-CCcEEEEE----eCCEEEEcCCCcccCHHHH
Confidence 44567778999999999999998754 999999986 34444565 3489999999998765553
No 40
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.56 E-value=1.4e-13 Score=129.80 Aligned_cols=58 Identities=14% Similarity=0.177 Sum_probs=45.9
Q ss_pred HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeC-CCceEEEEeecCCCcEEEEecCcccc
Q 045695 203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGS 269 (277)
Q Consensus 203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~-~g~~~~i~~~~~~a~~VVlAaG~~~t 269 (277)
+...+.+.|++++.++.+++|+.++++ +|.||.+.+. +++.+.+. ++.||||+||+..
T Consensus 154 L~~~~~~~gi~i~~~~~~~~Li~~~~g----~v~Gv~~~~~~~g~~~~i~-----AkaVILATGG~~~ 212 (591)
T PRK07057 154 LYQQNVAAKTQFFVEWMALDLIRDADG----DVLGVTALEMETGDVYILE-----AKTTLFATGGAGR 212 (591)
T ss_pred HHHHHHhcCCEEEeCcEEEEEEEcCCC----eEEEEEEEEcCCCeEEEEE-----CCeEEECCCCccc
Confidence 445556689999999999999987554 9999999763 45555554 7999999999874
No 41
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.55 E-value=8.2e-14 Score=132.18 Aligned_cols=48 Identities=13% Similarity=0.169 Sum_probs=39.7
Q ss_pred eEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceEEEEeecCCCcEEEEecCcccc
Q 045695 212 LTLLLHATVHKVLFRIKGKARPQAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS 269 (277)
Q Consensus 212 v~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~i~~~~~~a~~VVlAaG~~~t 269 (277)
++|+.++.|++|+.+++ +|.||.+.+ .+++.+.+. ++.||||||+++.
T Consensus 166 v~i~~~~~v~~L~~~~g-----~v~Gv~~~~~~~g~~~~i~-----Ak~VVlATGG~~~ 214 (626)
T PRK07803 166 IKVFAECTITELLKDGG-----RIAGAFGYWRESGRFVLFE-----APAVVLATGGIGK 214 (626)
T ss_pred eEEEeCCEEEEEEEECC-----EEEEEEEEECCCCeEEEEE-----cCeEEECCCcccC
Confidence 99999999999998765 999999875 356555665 6899999999764
No 42
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.55 E-value=1.5e-13 Score=129.42 Aligned_cols=57 Identities=23% Similarity=0.344 Sum_probs=45.2
Q ss_pred HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceEEEEeecCCCcEEEEecCcccc
Q 045695 203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS 269 (277)
Q Consensus 203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~i~~~~~~a~~VVlAaG~~~t 269 (277)
+...+++.|++|++++.|++|+.+++ +|.||.+.+ .+++...+. ++.||||||++..
T Consensus 141 L~~~~~~~gi~i~~~t~v~~L~~~~g-----~v~Gv~~~~~~~g~~~~i~-----AkaVVlATGG~~~ 198 (575)
T PRK05945 141 LVNNLRRYGVTIYDEWYVMRLILEDN-----QAKGVVMYHIADGRLEVVR-----AKAVMFATGGYGR 198 (575)
T ss_pred HHHHHhhCCCEEEeCcEEEEEEEECC-----EEEEEEEEEcCCCeEEEEE-----CCEEEECCCCCcC
Confidence 45556678999999999999998765 999999765 345555554 6999999999863
No 43
>PRK09077 L-aspartate oxidase; Provisional
Probab=99.55 E-value=2e-13 Score=127.54 Aligned_cols=54 Identities=9% Similarity=0.114 Sum_probs=43.0
Q ss_pred cCCCCeEEEcCcEEEEEEEec-----CCCCCCeEEEEEEEeC-CCceEEEEeecCCCcEEEEecCcccc
Q 045695 207 ANPSGLTLLLHATVHKVLFRI-----KGKARPQAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGS 269 (277)
Q Consensus 207 ~~~~gv~i~~~~~V~~l~~~~-----~~~~~~~v~gV~~~~~-~g~~~~i~~~~~~a~~VVlAaG~~~t 269 (277)
.+++|++|++++.|++|+.++ ++ +|+||.+.+. +++.+.+. ++.||||+|++..
T Consensus 149 ~~~~~I~v~~~~~v~~Li~~~~~~~~~g----~v~Gv~~~~~~~g~~~~i~-----Ak~VVlATGG~~~ 208 (536)
T PRK09077 149 RNHPNITVLERHNAIDLITSDKLGLPGR----RVVGAYVLNRNKERVETIR-----AKFVVLATGGASK 208 (536)
T ss_pred HhCCCcEEEeeEEeeeeeecccccCCCC----EEEEEEEEECCCCcEEEEe-----cCeEEECCCCCCC
Confidence 345699999999999999864 23 9999999863 46655665 6999999999873
No 44
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=99.55 E-value=1.7e-13 Score=129.07 Aligned_cols=52 Identities=15% Similarity=0.229 Sum_probs=42.4
Q ss_pred CCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceEEEEeecCCCcEEEEecCcccc
Q 045695 208 NPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS 269 (277)
Q Consensus 208 ~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~i~~~~~~a~~VVlAaG~~~t 269 (277)
+..++++++++.|++|+.+++ +|.||.+.+ .++..+.+. ++.||||+|++..
T Consensus 145 ~~~~i~i~~~~~v~~Li~~~g-----~v~Gv~~~~~~~g~~~~i~-----AkaVIlATGG~~~ 197 (582)
T PRK09231 145 KYPQIQRFDEHFVLDILVDDG-----HVRGLVAMNMMEGTLVQIR-----ANAVVMATGGAGR 197 (582)
T ss_pred cCCCcEEEeCeEEEEEEEeCC-----EEEEEEEEEcCCCcEEEEE-----CCEEEECCCCCcC
Confidence 345899999999999998765 999999875 356555665 7999999999774
No 45
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.54 E-value=2.2e-13 Score=128.50 Aligned_cols=50 Identities=18% Similarity=0.159 Sum_probs=40.7
Q ss_pred CeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeC-CCceEEEEeecCCCcEEEEecCcccc
Q 045695 211 GLTLLLHATVHKVLFRIKGKARPQAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGS 269 (277)
Q Consensus 211 gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~-~g~~~~i~~~~~~a~~VVlAaG~~~t 269 (277)
++++++++.+++|+.++++ +|+||.+.+. +++.+.+. ++.|||||||++.
T Consensus 151 ~i~i~~~~~~~~Li~~~~g----~v~Gv~~~~~~~g~~~~i~-----AkaVILATGG~~~ 201 (589)
T PRK08641 151 LVTKYEGWEFLGAVLDDEG----VCRGIVAQDLFTMEIESFP-----ADAVIMATGGPGI 201 (589)
T ss_pred CcEEEeeEEEEEEEECCCC----EEEEEEEEECCCCcEEEEE-----CCEEEECCCCCcC
Confidence 4899999999999987554 9999999874 34444554 7999999999875
No 46
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=99.53 E-value=3.1e-13 Score=125.12 Aligned_cols=56 Identities=13% Similarity=0.244 Sum_probs=43.9
Q ss_pred HHhhcCC-CCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCcccc
Q 045695 203 LLEYANP-SGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGS 269 (277)
Q Consensus 203 ~l~~~~~-~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~t 269 (277)
+...+++ .|++|++++.|++|+.+++ +|.||.+.+. +....+. ++.||||+|++..
T Consensus 134 L~~~~~~~~gi~i~~~~~v~~l~~~~g-----~v~Gv~~~~~-~~~~~i~-----A~~VVlAtGG~~~ 190 (488)
T TIGR00551 134 LVKKALNHPNIRIIEGENALDLLIETG-----RVVGVWVWNR-ETVETCH-----ADAVVLATGGAGK 190 (488)
T ss_pred HHHHHHhcCCcEEEECeEeeeeeccCC-----EEEEEEEEEC-CcEEEEE-----cCEEEECCCcccC
Confidence 4444554 7999999999999998765 9999999864 4444554 6999999999864
No 47
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.53 E-value=2.5e-13 Score=128.02 Aligned_cols=56 Identities=18% Similarity=0.151 Sum_probs=43.7
Q ss_pred HHhhc-CCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeC-CCceEEEEeecCCCcEEEEecCccc
Q 045695 203 LLEYA-NPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALG 268 (277)
Q Consensus 203 ~l~~~-~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~-~g~~~~i~~~~~~a~~VVlAaG~~~ 268 (277)
+...+ +..|++++.++.|++|+.+++ +|+||.+.+. +++.+.+. ++.||||+|++.
T Consensus 143 L~~~~~~~~gv~i~~~~~v~~Li~~~g-----~v~Gv~~~~~~~g~~~~i~-----Ak~VIlATGG~~ 200 (577)
T PRK06069 143 LYSRALRFDNIHFYDEHFVTSLIVENG-----VFKGVTAIDLKRGEFKVFQ-----AKAGIIATGGAG 200 (577)
T ss_pred HHHHHHhcCCCEEEECCEEEEEEEECC-----EEEEEEEEEcCCCeEEEEE-----CCcEEEcCchhc
Confidence 44433 446999999999999998765 9999998763 45545554 699999999985
No 48
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=99.53 E-value=3.9e-13 Score=126.66 Aligned_cols=57 Identities=19% Similarity=0.251 Sum_probs=45.2
Q ss_pred HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceEEEEeecCCCcEEEEecCcccc
Q 045695 203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS 269 (277)
Q Consensus 203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~i~~~~~~a~~VVlAaG~~~t 269 (277)
+...+.+.|+++++++.|++|+.+++ +|+||.+.+ .+++...+. ++.||||+|++..
T Consensus 135 L~~~~~~~gv~i~~~~~v~~L~~~~g-----~v~Gv~~~~~~~g~~~~i~-----Ak~VVlAtGG~~~ 192 (566)
T TIGR01812 135 LYEQCLKLGVSFFNEYFALDLIHDDG-----RVRGVVAYDLKTGEIVFFR-----AKAVVLATGGYGR 192 (566)
T ss_pred HHHHHHHcCCEEEeccEEEEEEEeCC-----EEEEEEEEECCCCcEEEEE-----CCeEEECCCcccC
Confidence 44555566999999999999998865 999999876 345555565 6999999999863
No 49
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.52 E-value=3.3e-13 Score=127.28 Aligned_cols=58 Identities=24% Similarity=0.309 Sum_probs=45.6
Q ss_pred HHhhcCCCCeEEEcCcEEEEEEEecC---CCCCCeEEEEEEEe-CCCceEEEEeecCCCcEEEEecCcccc
Q 045695 203 LLEYANPSGLTLLLHATVHKVLFRIK---GKARPQAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS 269 (277)
Q Consensus 203 ~l~~~~~~gv~i~~~~~V~~l~~~~~---~~~~~~v~gV~~~~-~~g~~~~i~~~~~~a~~VVlAaG~~~t 269 (277)
+...+++.|++|++++.|++|+.+++ + +|+||.+.+ .+++.+.+. ++.||||||+++.
T Consensus 146 L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g----~v~Gv~~~~~~~g~~~~i~-----AkaVVLATGG~~~ 207 (583)
T PRK08205 146 LYQNCVKHGVEFFNEFYVLDLLLTETPSGP----VAAGVVAYELATGEIHVFH-----AKAVVFATGGSGR 207 (583)
T ss_pred HHHHHHhcCCEEEeCCEEEEEEecCCccCC----cEEEEEEEEcCCCeEEEEE-----eCeEEECCCCCcc
Confidence 44556678999999999999998762 4 999999865 345555565 6999999999873
No 50
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=99.52 E-value=3e-13 Score=127.24 Aligned_cols=52 Identities=15% Similarity=0.187 Sum_probs=43.0
Q ss_pred CCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceEEEEeecCCCcEEEEecCcccc
Q 045695 208 NPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS 269 (277)
Q Consensus 208 ~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~i~~~~~~a~~VVlAaG~~~t 269 (277)
+..+++++.++.+++|+.+++ +|.||.+.+ .+++.+.+. ++.||||+|++..
T Consensus 144 ~~~~i~i~~~~~v~~Li~~~g-----~v~Gv~~~~~~~g~~~~i~-----AkaVILATGG~~~ 196 (580)
T TIGR01176 144 TYPQIMRYDEWFVTDLLVDDG-----RVCGLVAIEMAEGRLVTIL-----ADAVVLATGGAGR 196 (580)
T ss_pred hcCCCEEEeCeEEEEEEeeCC-----EEEEEEEEEcCCCcEEEEe-----cCEEEEcCCCCcc
Confidence 446899999999999998865 999999876 356666665 6999999999874
No 51
>PRK07512 L-aspartate oxidase; Provisional
Probab=99.51 E-value=3.5e-13 Score=125.28 Aligned_cols=55 Identities=18% Similarity=0.318 Sum_probs=42.7
Q ss_pred HHhhcCC-CCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccc
Q 045695 203 LLEYANP-SGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALG 268 (277)
Q Consensus 203 ~l~~~~~-~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~ 268 (277)
+...+.+ .|++|+.++.|++|+.+++ +|+||.+.+ ++..+.+. ++.|||||||++
T Consensus 142 L~~~~~~~~gV~i~~~~~v~~Li~~~g-----~v~Gv~~~~-~~~~~~i~-----Ak~VVLATGG~~ 197 (513)
T PRK07512 142 LIAAVRATPSITVLEGAEARRLLVDDG-----AVAGVLAAT-AGGPVVLP-----ARAVVLATGGIG 197 (513)
T ss_pred HHHHHHhCCCCEEEECcChhheeecCC-----EEEEEEEEe-CCeEEEEE-----CCEEEEcCCCCc
Confidence 4444443 5999999999999988765 999999986 34444554 699999999986
No 52
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=99.49 E-value=6.4e-13 Score=125.56 Aligned_cols=53 Identities=15% Similarity=0.251 Sum_probs=43.1
Q ss_pred CCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeC-CCceEEEEeecCCCcEEEEecCcccc
Q 045695 208 NPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGS 269 (277)
Q Consensus 208 ~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~-~g~~~~i~~~~~~a~~VVlAaG~~~t 269 (277)
++.|++|++++.|++|+.++++ +|+||.+.+. +++.+.+. ++.|||||||++.
T Consensus 144 ~~~gV~i~~~t~v~~Li~dd~g----rV~GV~~~~~~~g~~~~i~-----AkaVVLATGG~g~ 197 (603)
T TIGR01811 144 AAGLVEKYEGWEMLDIIVVDGN----RARGIIARNLVTGEIETHS-----ADAVILATGGYGN 197 (603)
T ss_pred ccCCcEEEeCcEEEEEEEcCCC----EEEEEEEEECCCCcEEEEE-----cCEEEECCCCCcC
Confidence 3458999999999999987654 9999999874 46555665 6899999999863
No 53
>PRK08275 putative oxidoreductase; Provisional
Probab=99.49 E-value=6.1e-13 Score=124.87 Aligned_cols=57 Identities=19% Similarity=0.238 Sum_probs=44.8
Q ss_pred HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceEEEEeecCCCcEEEEecCccc
Q 045695 203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALG 268 (277)
Q Consensus 203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~i~~~~~~a~~VVlAaG~~~ 268 (277)
+...+++.|++|++++.|++|+.++++ +|.||.+.+ .+++...+. ++.||||||+++
T Consensus 143 L~~~~~~~gv~i~~~~~v~~Li~~~~g----~v~Gv~~~~~~~g~~~~i~-----Ak~VIlATGG~~ 200 (554)
T PRK08275 143 LYRQLKRARVLITNRIMATRLLTDADG----RVAGALGFDCRTGEFLVIR-----AKAVILCCGAAG 200 (554)
T ss_pred HHHHHHHCCCEEEcceEEEEEEEcCCC----eEEEEEEEecCCCcEEEEE-----CCEEEECCCCcc
Confidence 445566689999999999999997444 999999875 345555554 689999999975
No 54
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.48 E-value=3.4e-13 Score=119.26 Aligned_cols=59 Identities=29% Similarity=0.356 Sum_probs=43.2
Q ss_pred HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccccHHHHhccC
Q 045695 203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 277 (277)
Q Consensus 203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~tp~lLl~SG 277 (277)
+...+++.|++|+++++|++|..+++ +++||++. +|+ +. ++.||+|+|. .+++++-.+|
T Consensus 153 l~~~~~~~Gv~i~~~~~V~~i~~~~~-----~v~gv~~~--~g~---i~-----ad~vV~a~G~-~s~~l~~~~~ 211 (358)
T PF01266_consen 153 LAAEAQRAGVEIRTGTEVTSIDVDGG-----RVTGVRTS--DGE---IR-----ADRVVLAAGA-WSPQLLPLLG 211 (358)
T ss_dssp HHHHHHHTT-EEEESEEEEEEEEETT-----EEEEEEET--TEE---EE-----ECEEEE--GG-GHHHHHHTTT
T ss_pred hHHHHHHhhhhccccccccchhhccc-----cccccccc--ccc---cc-----cceeEecccc-cceeeeeccc
Confidence 44566667999999999999999998 88888875 342 44 5999999998 6777766543
No 55
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=99.45 E-value=1.7e-12 Score=122.34 Aligned_cols=54 Identities=19% Similarity=0.156 Sum_probs=42.6
Q ss_pred cCCCCeEEEcCcEEEEEEEecC--CCCCCeEEEEEEEe-CCCceEEEEeecCCCcEEEEecCcccc
Q 045695 207 ANPSGLTLLLHATVHKVLFRIK--GKARPQAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS 269 (277)
Q Consensus 207 ~~~~gv~i~~~~~V~~l~~~~~--~~~~~~v~gV~~~~-~~g~~~~i~~~~~~a~~VVlAaG~~~t 269 (277)
..+.++++++++.|++|+.+++ + +|.||.+.+ .+++.+.+. ++.||||||++..
T Consensus 136 l~~~~~~i~~~~~v~~Ll~d~~~~G----rV~Gv~~~~~~~g~~~~i~-----AkaVVLATGG~~~ 192 (614)
T TIGR02061 136 AKNALGDIFERIFIVKLLLDKNTPN----RIAGAVGFNVRANEVHVFK-----AKTVIVAAGGAVN 192 (614)
T ss_pred HHhCCCeEEcccEEEEEEecCCCCC----eEEEEEEEEeCCCcEEEEE-----CCEEEECCCcccc
Confidence 3445689999999999998752 4 999999976 356666665 7999999999863
No 56
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.43 E-value=4.5e-13 Score=113.60 Aligned_cols=40 Identities=28% Similarity=0.249 Sum_probs=35.2
Q ss_pred CCCCCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695 27 AQPVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (277)
Q Consensus 27 ~~~~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~ 66 (277)
.....++||+|||+|++|+++|+.|++ |++|+||||....
T Consensus 20 ~~~~~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~ 60 (257)
T PRK04176 20 LLDYLEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSF 60 (257)
T ss_pred HHHhccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 344558999999999999999999999 9999999998653
No 57
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.43 E-value=3.7e-12 Score=125.59 Aligned_cols=50 Identities=18% Similarity=0.167 Sum_probs=41.4
Q ss_pred CCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceEEEEeecCCCcEEEEecCcccc
Q 045695 210 SGLTLLLHATVHKVLFRIKGKARPQAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS 269 (277)
Q Consensus 210 ~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~i~~~~~~a~~VVlAaG~~~t 269 (277)
.++.+.+++.+++|+.+++ +|.||.+.+ .+|+.+.+. +|.|||||||++.
T Consensus 156 ~~i~~~~~~~~~~Li~~~g-----~v~Gv~~~~~~~g~~~~i~-----AkaVILATGG~g~ 206 (897)
T PRK13800 156 ERIRIENRLMPVRVLTEGG-----RAVGAAALNTRTGEFVTVG-----AKAVILATGPCGR 206 (897)
T ss_pred CCcEEEeceeeEEEEeeCC-----EEEEEEEEecCCCcEEEEE-----CCEEEECCCcccc
Confidence 4899999999999998765 999999876 357666665 7999999999863
No 58
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.43 E-value=1.3e-12 Score=124.01 Aligned_cols=74 Identities=23% Similarity=0.246 Sum_probs=53.1
Q ss_pred ECCCCeeeCHHH---HHhhcCCCCeEEEcCcEEEEEEEec-CCCCCCeEEEEEEEeC-CCceEEEEeecCCCcEEEEecC
Q 045695 191 FDQNGQRHTAAD---LLEYANPSGLTLLLHATVHKVLFRI-KGKARPQAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAG 265 (277)
Q Consensus 191 ~~~~g~~~~~~~---~l~~~~~~gv~i~~~~~V~~l~~~~-~~~~~~~v~gV~~~~~-~g~~~~i~~~~~~a~~VVlAaG 265 (277)
...+|+-.+... +...+.+.|++++.+++|++|..++ ++ ++++|++.|. +++.+.+. ++.||+|||
T Consensus 223 ~~~Dg~vdp~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g----~v~gV~v~d~~tg~~~~i~-----a~~VVnAaG 293 (627)
T PLN02464 223 VYYDGQMNDSRLNVALACTAALAGAAVLNYAEVVSLIKDESTG----RIVGARVRDNLTGKEFDVY-----AKVVVNAAG 293 (627)
T ss_pred EecCcEEcHHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCC----cEEEEEEEECCCCcEEEEE-----eCEEEECCC
Confidence 345666543332 4556777899999999999999875 33 8999999863 45554565 699999999
Q ss_pred ccccHHHHh
Q 045695 266 ALGSPQLLM 274 (277)
Q Consensus 266 ~~~tp~lLl 274 (277)
+ .+.+++.
T Consensus 294 a-ws~~l~~ 301 (627)
T PLN02464 294 P-FCDEVRK 301 (627)
T ss_pred H-hHHHHHH
Confidence 9 4555554
No 59
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=99.43 E-value=2.8e-12 Score=121.42 Aligned_cols=56 Identities=18% Similarity=0.148 Sum_probs=42.8
Q ss_pred HHhhcCCC-CeEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceEEEEeecCCCcEEEEecCccc
Q 045695 203 LLEYANPS-GLTLLLHATVHKVLFRIKGKARPQAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALG 268 (277)
Q Consensus 203 ~l~~~~~~-gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~i~~~~~~a~~VVlAaG~~~ 268 (277)
+...+++. |+++++++.|++|+.+++ +|+||.+.+ .+++...+. ++.||||+|++.
T Consensus 138 L~~~a~~~ggV~i~~~~~v~~Li~~~g-----~v~Gv~~~~~~~g~~~~i~-----AkaVILATGG~~ 195 (608)
T PRK06854 138 VAEAAKKALGDNVLNRVFITDLLVDDN-----RIAGAVGFSVRENKFYVFK-----AKAVIVATGGAA 195 (608)
T ss_pred HHHHHHhcCCCEEEeCCEEEEEEEeCC-----EEEEEEEEEccCCcEEEEE-----CCEEEECCCchh
Confidence 33445444 599999999999998765 999998754 345555554 699999999986
No 60
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.41 E-value=9.8e-12 Score=111.21 Aligned_cols=60 Identities=25% Similarity=0.319 Sum_probs=44.5
Q ss_pred HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceEEEEeecCCCcEEEEecCccccHHHHhccC
Q 045695 203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 277 (277)
Q Consensus 203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~i~~~~~~a~~VVlAaG~~~tp~lLl~SG 277 (277)
|...+..+|++++.+++|++|..+++ |+.+.+ .+|+.. +. ++.||.|||. .+.+|+..+|
T Consensus 159 l~e~a~~~g~~i~ln~eV~~i~~~~d--------g~~~~~~~~g~~~-~~-----ak~Vin~AGl-~Ad~la~~~g 219 (429)
T COG0579 159 LAEEAQANGVELRLNTEVTGIEKQSD--------GVFVLNTSNGEET-LE-----AKFVINAAGL-YADPLAQMAG 219 (429)
T ss_pred HHHHHHHcCCEEEecCeeeEEEEeCC--------ceEEEEecCCcEE-EE-----eeEEEECCch-hHHHHHHHhC
Confidence 55666677999999999999999887 233333 345543 54 6899999998 6777777665
No 61
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.40 E-value=1.5e-11 Score=110.18 Aligned_cols=36 Identities=36% Similarity=0.468 Sum_probs=33.2
Q ss_pred CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695 31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (277)
Q Consensus 31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~ 66 (277)
++|||+|||+|+.|+++|+.|++ |.+|+||||+...
T Consensus 2 ~~~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~~~ 38 (376)
T PRK11259 2 MRYDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFMPP 38 (376)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEecccCC
Confidence 46899999999999999999999 9999999999653
No 62
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.38 E-value=2.3e-11 Score=109.02 Aligned_cols=34 Identities=38% Similarity=0.672 Sum_probs=31.7
Q ss_pred ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~ 66 (277)
|||||||+|++|+++|+.|++ |.+|+|||++...
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~~~ 35 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFDLP 35 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCC
Confidence 699999999999999999999 9999999998653
No 63
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.36 E-value=1.1e-11 Score=112.48 Aligned_cols=33 Identities=27% Similarity=0.397 Sum_probs=31.4
Q ss_pred ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~ 65 (277)
+||||||+|++|+++|++|++ |.+|+||||+..
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~ 35 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRY 35 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 599999999999999999999 999999999974
No 64
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.36 E-value=3.6e-12 Score=107.83 Aligned_cols=37 Identities=32% Similarity=0.384 Sum_probs=34.2
Q ss_pred CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695 30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (277)
Q Consensus 30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~ 66 (277)
..+|||+|||+|++|+++|+.|++ |.+|+||||+...
T Consensus 19 ~~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~ 56 (254)
T TIGR00292 19 YAESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAF 56 (254)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 458999999999999999999999 9999999999654
No 65
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=99.35 E-value=1.3e-11 Score=109.93 Aligned_cols=57 Identities=21% Similarity=0.308 Sum_probs=45.1
Q ss_pred HHh-hcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccc
Q 045695 203 LLE-YANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALG 268 (277)
Q Consensus 203 ~l~-~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~ 268 (277)
++. ..+++|++|+.++.+.+|+.+++. .+.||.+.+.+++...+. ++.|||||||++
T Consensus 139 L~~~v~~~p~I~v~e~~~a~~li~~~~~----~~~Gv~~~~~~~~~~~~~-----a~~vVLATGG~g 196 (518)
T COG0029 139 LLKKVRNRPNITVLEGAEALDLIIEDGI----GVAGVLVLNRNGELGTFR-----AKAVVLATGGLG 196 (518)
T ss_pred HHHHHhcCCCcEEEecchhhhhhhcCCc----eEeEEEEecCCCeEEEEe-----cCeEEEecCCCc
Confidence 444 455699999999999999999982 455999987534456665 799999999976
No 66
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=99.35 E-value=7.4e-12 Score=114.32 Aligned_cols=60 Identities=20% Similarity=0.313 Sum_probs=46.2
Q ss_pred HHhhcCCCCeEEEcCcEEEEEEEec-CCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccccHHHHh
Q 045695 203 LLEYANPSGLTLLLHATVHKVLFRI-KGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLM 274 (277)
Q Consensus 203 ~l~~~~~~gv~i~~~~~V~~l~~~~-~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~tp~lLl 274 (277)
+...+++.|++|+++++|++|+.++ ++ +|+||...+ ++ ..+. ++.||||+|++..++-|+
T Consensus 129 L~~~a~~~Gv~i~~~~~v~~l~~~~~~g----~v~gv~~~~-~~--~~i~-----ak~VIlAtGG~~~n~~~~ 189 (432)
T TIGR02485 129 LYSSAERLGVEIRYGIAVDRIPPEAFDG----AHDGPLTTV-GT--HRIT-----TQALVLAAGGLGANRDWL 189 (432)
T ss_pred HHHHHHHcCCEEEeCCEEEEEEecCCCC----eEEEEEEcC-Cc--EEEE-----cCEEEEcCCCcccCHHHH
Confidence 5556777899999999999999873 43 899988753 22 3454 689999999998876554
No 67
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.35 E-value=3.8e-11 Score=111.62 Aligned_cols=39 Identities=33% Similarity=0.520 Sum_probs=35.0
Q ss_pred CCCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCC
Q 045695 29 PVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY 67 (277)
Q Consensus 29 ~~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~ 67 (277)
|...|||||||||+.|+++|+.|++ |++|+||||++...
T Consensus 3 ~~~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~ 42 (508)
T PRK12266 3 MMETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLAS 42 (508)
T ss_pred CCCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 3457999999999999999999999 99999999986543
No 68
>PRK08401 L-aspartate oxidase; Provisional
Probab=99.35 E-value=2.2e-11 Score=112.10 Aligned_cols=32 Identities=31% Similarity=0.450 Sum_probs=30.7
Q ss_pred ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~ 64 (277)
+||||||+|.+|++||++|++ |.+|+||||+.
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~ 34 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGI 34 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 699999999999999999999 99999999984
No 69
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.34 E-value=2.6e-11 Score=112.68 Aligned_cols=39 Identities=31% Similarity=0.486 Sum_probs=35.3
Q ss_pred CCCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCC
Q 045695 29 PVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY 67 (277)
Q Consensus 29 ~~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~ 67 (277)
+..+|||||||||+.|+++|+.|++ |++|+||||++...
T Consensus 3 ~~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~~ 42 (502)
T PRK13369 3 EPETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQ 42 (502)
T ss_pred CCcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCC
Confidence 4567999999999999999999999 99999999996543
No 70
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.32 E-value=4.9e-12 Score=101.92 Aligned_cols=37 Identities=38% Similarity=0.502 Sum_probs=30.7
Q ss_pred CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695 30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (277)
Q Consensus 30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~ 66 (277)
..++||+|||+|++|+++|+.|++ |+||+|+|+....
T Consensus 15 ~~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~ 52 (230)
T PF01946_consen 15 YLEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSP 52 (230)
T ss_dssp HTEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-
T ss_pred hccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCC
Confidence 458999999999999999999999 9999999998654
No 71
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.31 E-value=9.1e-11 Score=106.29 Aligned_cols=37 Identities=38% Similarity=0.553 Sum_probs=32.7
Q ss_pred CCCccEEEECCChhhHHHHhhhhC--C-CcEEEEcCCCCC
Q 045695 30 VSYYDYIIIGGGTAGCPLAATLSQ--N-ASVLLLERGGSP 66 (277)
Q Consensus 30 ~~~~DviIIGsG~aG~~aA~~La~--g-~~VlvlE~g~~~ 66 (277)
+..+||+|||+|+.|+++|+.|++ | .+|+||||+...
T Consensus 28 ~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~~ 67 (407)
T TIGR01373 28 KPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLG 67 (407)
T ss_pred CccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccccc
Confidence 468999999999999999999996 7 499999998543
No 72
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.31 E-value=3.9e-11 Score=110.41 Aligned_cols=38 Identities=32% Similarity=0.315 Sum_probs=33.4
Q ss_pred CCCCccEEEECCChhhHHHHhhhhC---CCcEEEEcCCCCC
Q 045695 29 PVSYYDYIIIGGGTAGCPLAATLSQ---NASVLLLERGGSP 66 (277)
Q Consensus 29 ~~~~~DviIIGsG~aG~~aA~~La~---g~~VlvlE~g~~~ 66 (277)
.+.++||+|||+|++|+++|++|++ |.+|+|||++...
T Consensus 21 ~~~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~~g 61 (460)
T TIGR03329 21 GDTQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLCG 61 (460)
T ss_pred CCceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCccc
Confidence 3557999999999999999999997 6899999998653
No 73
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=99.30 E-value=2.3e-11 Score=113.24 Aligned_cols=53 Identities=28% Similarity=0.336 Sum_probs=43.2
Q ss_pred cCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeC-CCceEEEEeecCCCcEEEEecCccc
Q 045695 207 ANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALG 268 (277)
Q Consensus 207 ~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~-~g~~~~i~~~~~~a~~VVlAaG~~~ 268 (277)
.+..+++++.+..+++|+.++++ .|.||...+. +++.+.++ ++.||+||||.+
T Consensus 149 ~~~~~~~~~~~~~~~~l~~~~~~----~v~Gvv~~~~~~g~~~~~~-----akavilaTGG~g 202 (562)
T COG1053 149 LKFSGIEIFDEYFVLDLLVDDGG----GVAGVVARDLRTGELYVFR-----AKAVILATGGAG 202 (562)
T ss_pred HHhhcchhhhhhhhhhheecCCC----cEEEEEEEEecCCcEEEEe-----cCcEEEccCCce
Confidence 34367899999999999998874 6999999984 46666665 689999999987
No 74
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.30 E-value=5.2e-11 Score=109.73 Aligned_cols=36 Identities=39% Similarity=0.682 Sum_probs=32.3
Q ss_pred CCCccEEEECCChhhHHHHhhhhC-C--CcEEEEcCCCC
Q 045695 30 VSYYDYIIIGGGTAGCPLAATLSQ-N--ASVLLLERGGS 65 (277)
Q Consensus 30 ~~~~DviIIGsG~aG~~aA~~La~-g--~~VlvlE~g~~ 65 (277)
...+||||||||+.|+++|+.|++ + .+|+||||...
T Consensus 43 ~~~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~~ 81 (497)
T PTZ00383 43 SDVYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRSD 81 (497)
T ss_pred CCcccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCcc
Confidence 357999999999999999999998 4 69999999863
No 75
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.30 E-value=2.1e-10 Score=105.80 Aligned_cols=33 Identities=33% Similarity=0.505 Sum_probs=30.7
Q ss_pred ccEEEECCChhhHHHHhhhhC---CCcEEEEcCCCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ---NASVLLLERGGS 65 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~---g~~VlvlE~g~~ 65 (277)
+||+|||||++|+++|+.|++ |.+|+||||...
T Consensus 1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~~ 36 (483)
T TIGR01320 1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIERLDA 36 (483)
T ss_pred CcEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCCc
Confidence 699999999999999999997 799999999764
No 76
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.29 E-value=4.3e-11 Score=107.96 Aligned_cols=35 Identities=40% Similarity=0.798 Sum_probs=31.7
Q ss_pred CccEEEECCChhhHHHHhhhhC---CCcEEEEcCCCCC
Q 045695 32 YYDYIIIGGGTAGCPLAATLSQ---NASVLLLERGGSP 66 (277)
Q Consensus 32 ~~DviIIGsG~aG~~aA~~La~---g~~VlvlE~g~~~ 66 (277)
.+||+|||+|++|+++|++|++ |.+|+||||+...
T Consensus 2 ~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~~ 39 (393)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGP 39 (393)
T ss_pred CccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCcc
Confidence 4899999999999999999996 7899999998643
No 77
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.28 E-value=9.8e-11 Score=106.32 Aligned_cols=32 Identities=25% Similarity=0.432 Sum_probs=30.4
Q ss_pred cEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (277)
Q Consensus 34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~ 65 (277)
||+|||+|++|+++|++|++ |.+|+||||+..
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~ 34 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPG 34 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence 89999999999999999999 999999999853
No 78
>PLN02661 Putative thiazole synthesis
Probab=99.27 E-value=2.8e-11 Score=105.59 Aligned_cols=36 Identities=36% Similarity=0.507 Sum_probs=32.4
Q ss_pred CCCccEEEECCChhhHHHHhhhhC--CCcEEEEcCCCC
Q 045695 30 VSYYDYIIIGGGTAGCPLAATLSQ--NASVLLLERGGS 65 (277)
Q Consensus 30 ~~~~DviIIGsG~aG~~aA~~La~--g~~VlvlE~g~~ 65 (277)
..++||+|||+|++|+++|+.|++ |.+|+||||+..
T Consensus 90 ~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~ 127 (357)
T PLN02661 90 YADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVS 127 (357)
T ss_pred cccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcc
Confidence 357899999999999999999995 799999999754
No 79
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.25 E-value=2.4e-11 Score=97.51 Aligned_cols=37 Identities=32% Similarity=0.345 Sum_probs=33.4
Q ss_pred CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695 30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (277)
Q Consensus 30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~ 66 (277)
..+.||||||+|++|++|||.||+ |+||+|+||.-..
T Consensus 28 ~~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~ 65 (262)
T COG1635 28 YLESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSF 65 (262)
T ss_pred hhhccEEEECcCcchHHHHHHHHhCCceEEEEEeeccc
Confidence 346799999999999999999999 9999999998543
No 80
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.25 E-value=3.2e-10 Score=104.75 Aligned_cols=36 Identities=31% Similarity=0.458 Sum_probs=32.3
Q ss_pred CCCccEEEECCChhhHHHHhhhhC---CCcEEEEcCCCC
Q 045695 30 VSYYDYIIIGGGTAGCPLAATLSQ---NASVLLLERGGS 65 (277)
Q Consensus 30 ~~~~DviIIGsG~aG~~aA~~La~---g~~VlvlE~g~~ 65 (277)
+..+||||||||+.|+++|+.|++ |.+|+||||...
T Consensus 3 ~~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~ 41 (494)
T PRK05257 3 ESKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDG 41 (494)
T ss_pred CccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCc
Confidence 346899999999999999999987 589999999864
No 81
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.24 E-value=1.7e-10 Score=105.45 Aligned_cols=56 Identities=21% Similarity=0.239 Sum_probs=46.2
Q ss_pred hcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeC-CCceEEEEeecCCCcEEEEecCccccHHHH
Q 045695 206 YANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGSPQLL 273 (277)
Q Consensus 206 ~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~-~g~~~~i~~~~~~a~~VVlAaG~~~tp~lL 273 (277)
.+...|.++++.++|+++..+++ +.||++.|. .|+.+.++ ++.||.|||.+ ..+++
T Consensus 173 ~A~~~Ga~il~~~~v~~~~re~~------v~gV~~~D~~tg~~~~ir-----a~~VVNAaGpW-~d~i~ 229 (532)
T COG0578 173 DAAEHGAEILTYTRVESLRREGG------VWGVEVEDRETGETYEIR-----ARAVVNAAGPW-VDEIL 229 (532)
T ss_pred HHHhcccchhhcceeeeeeecCC------EEEEEEEecCCCcEEEEE-----cCEEEECCCcc-HHHHH
Confidence 56678999999999999998773 889999984 47888887 79999999994 44443
No 82
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.21 E-value=1.2e-10 Score=106.22 Aligned_cols=37 Identities=43% Similarity=0.663 Sum_probs=34.1
Q ss_pred CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCC
Q 045695 31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY 67 (277)
Q Consensus 31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~ 67 (277)
.+|||||||+|++|+++|+.|++ |++|+||||+..+.
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g 41 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAG 41 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCC
Confidence 46999999999999999999999 99999999997653
No 83
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.20 E-value=3.1e-10 Score=101.28 Aligned_cols=34 Identities=35% Similarity=0.574 Sum_probs=31.8
Q ss_pred ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~ 66 (277)
|||+|||+|++|+++|+.|++ |.+|+|||++...
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~~ 35 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSRA 35 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 699999999999999999999 9999999998653
No 84
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=99.18 E-value=2.6e-11 Score=110.53 Aligned_cols=51 Identities=22% Similarity=0.328 Sum_probs=0.0
Q ss_pred hhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCc
Q 045695 205 EYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGA 266 (277)
Q Consensus 205 ~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~ 266 (277)
..+.+.|++|++++.|.+++.+++ +|.+|++.+++| ..++. ++.||-|+|-
T Consensus 98 ~~l~e~gv~v~~~t~v~~v~~~~~-----~i~~V~~~~~~g-~~~i~-----A~~~IDaTG~ 148 (428)
T PF12831_consen 98 EMLAEAGVEVLLGTRVVDVIRDGG-----RITGVIVETKSG-RKEIR-----AKVFIDATGD 148 (428)
T ss_dssp --------------------------------------------------------------
T ss_pred cccccccccccccccccccccccc-----cccccccccccc-ccccc-----cccccccccc
Confidence 345668999999999999999876 999999998655 56665 7999999994
No 85
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.17 E-value=2.1e-10 Score=103.62 Aligned_cols=37 Identities=41% Similarity=0.701 Sum_probs=34.9
Q ss_pred CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCC
Q 045695 31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY 67 (277)
Q Consensus 31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~ 67 (277)
++|||+|||+|++|++||+.|++ |.+|+||||+..+.
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G 39 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPG 39 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCC
Confidence 57999999999999999999999 99999999998765
No 86
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=99.17 E-value=2e-09 Score=99.16 Aligned_cols=34 Identities=18% Similarity=0.336 Sum_probs=31.0
Q ss_pred CCCccEEEECCChhhHHHHhhhhC---CCcEEEEcCC
Q 045695 30 VSYYDYIIIGGGTAGCPLAATLSQ---NASVLLLERG 63 (277)
Q Consensus 30 ~~~~DviIIGsG~aG~~aA~~La~---g~~VlvlE~g 63 (277)
...+||||||||++|+++|+.|++ +.+|+||||-
T Consensus 4 ~~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~ 40 (497)
T PRK13339 4 SESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERL 40 (497)
T ss_pred CccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcC
Confidence 457899999999999999999998 6999999993
No 87
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.14 E-value=5e-11 Score=106.81 Aligned_cols=67 Identities=25% Similarity=0.330 Sum_probs=53.7
Q ss_pred CCCeeeCHHH--HHh-hcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeC-CCceEEEEeecCCCcEEEEecCccc
Q 045695 193 QNGQRHTAAD--LLE-YANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALG 268 (277)
Q Consensus 193 ~~g~~~~~~~--~l~-~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~-~g~~~~i~~~~~~a~~VVlAaG~~~ 268 (277)
.+|+...++. .+. .+.+.|.+++-+.+|.+|+.++++ ++.|++++|. .|+++.|+ ++.||-|||.|.
T Consensus 217 yDGQ~nDaRmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~~----kv~Ga~~rD~iTG~e~~I~-----Ak~VVNATGpfs 287 (680)
T KOG0042|consen 217 YDGQHNDARMNLAVALTAARNGATVLNHVEVVSLLKDKDG----KVIGARARDHITGKEYEIR-----AKVVVNATGPFS 287 (680)
T ss_pred ecCCCchHHHHHHHHHHHHhcchhhhhHHHHHHHhhCCCC----ceeeeEEEEeecCcEEEEE-----EEEEEeCCCCcc
Confidence 4566655543 222 355679999999999999999986 9999999983 68888987 699999999964
No 88
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.14 E-value=6e-10 Score=106.96 Aligned_cols=34 Identities=41% Similarity=0.526 Sum_probs=31.9
Q ss_pred CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695 32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (277)
Q Consensus 32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~ 65 (277)
++||||||+|++|+++|+.|++ |.+|+||||+..
T Consensus 260 ~~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~~ 294 (662)
T PRK01747 260 ARDAAIIGGGIAGAALALALARRGWQVTLYEADEA 294 (662)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 4799999999999999999999 999999999854
No 89
>PRK10015 oxidoreductase; Provisional
Probab=99.13 E-value=2.4e-10 Score=104.13 Aligned_cols=37 Identities=35% Similarity=0.611 Sum_probs=34.1
Q ss_pred CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCC
Q 045695 31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY 67 (277)
Q Consensus 31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~ 67 (277)
.+|||||||+|++|+++|+.|++ |++|+||||+..+.
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g 41 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAG 41 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCC
Confidence 46999999999999999999999 99999999997653
No 90
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=99.10 E-value=4e-09 Score=89.95 Aligned_cols=36 Identities=36% Similarity=0.549 Sum_probs=33.4
Q ss_pred CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695 31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (277)
Q Consensus 31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~ 66 (277)
.++||||||+|.+|+.+|.+||+ |.+|+|||.-...
T Consensus 4 ~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeq 40 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQ 40 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHhcCceEEEEcccccc
Confidence 47899999999999999999999 9999999987664
No 91
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=99.10 E-value=5.8e-10 Score=96.42 Aligned_cols=55 Identities=20% Similarity=0.317 Sum_probs=43.7
Q ss_pred hcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccccHH
Q 045695 206 YANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQ 271 (277)
Q Consensus 206 ~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~tp~ 271 (277)
++..+|+++. +..|.+|+.|++ .|.||.++++.++..+.. |.-.|+|-|.|..-|
T Consensus 157 a~slpNV~~e-eGtV~sLlee~g-----vvkGV~yk~k~gee~~~~-----ApLTvVCDGcfSnlR 211 (509)
T KOG1298|consen 157 AASLPNVRLE-EGTVKSLLEEEG-----VVKGVTYKNKEGEEVEAF-----APLTVVCDGCFSNLR 211 (509)
T ss_pred HhcCCCeEEe-eeeHHHHHhccC-----eEEeEEEecCCCceEEEe-----cceEEEecchhHHHH
Confidence 5566899984 556888888887 999999998777766665 789999999987654
No 92
>PRK06185 hypothetical protein; Provisional
Probab=99.09 E-value=2.3e-09 Score=97.12 Aligned_cols=36 Identities=36% Similarity=0.547 Sum_probs=33.4
Q ss_pred CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695 30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (277)
Q Consensus 30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~ 65 (277)
.+++||+|||+|++|+++|+.|++ |++|+|||+.+.
T Consensus 4 ~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~ 40 (407)
T PRK06185 4 VETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHAD 40 (407)
T ss_pred cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 467999999999999999999999 999999999854
No 93
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=99.08 E-value=1.6e-09 Score=98.00 Aligned_cols=32 Identities=50% Similarity=0.602 Sum_probs=29.5
Q ss_pred EEECCChhhHHHHhhhhC-CCcEEEEcCCCCCC
Q 045695 36 IIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY 67 (277)
Q Consensus 36 iIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~ 67 (277)
||||+|++|+++|+.|++ |.+|+||||.....
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G 33 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIG 33 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCcccc
Confidence 699999999999999999 99999999987643
No 94
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=99.05 E-value=2.3e-09 Score=91.36 Aligned_cols=39 Identities=36% Similarity=0.439 Sum_probs=35.6
Q ss_pred CCCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCC
Q 045695 29 PVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY 67 (277)
Q Consensus 29 ~~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~ 67 (277)
+....|+||||+|+-|+++|++|++ |.++++||+-+.+.
T Consensus 4 ~~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph 43 (399)
T KOG2820|consen 4 MVKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPH 43 (399)
T ss_pred cccceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCc
Confidence 4567899999999999999999999 99999999997764
No 95
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=99.05 E-value=3.8e-09 Score=97.66 Aligned_cols=63 Identities=19% Similarity=0.402 Sum_probs=47.4
Q ss_pred HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCcccc
Q 045695 203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGS 269 (277)
Q Consensus 203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~t 269 (277)
+...++++|++|+++++|++|+++.++ .+.+|+||++.. +|+..++.+ .+++.||+++|++..
T Consensus 232 L~~~Le~~GV~f~~~t~VtdL~~~~d~-~~~~VtgI~~~~-~~~~~~I~l--~~~DlVivTnGs~t~ 294 (576)
T PRK13977 232 LIKYLEDHGVDFQYGTKVTDIDFDITG-GKKTATAIHLTR-NGKEETIDL--TEDDLVFVTNGSITE 294 (576)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEEcCCC-CceEEEEEEEEe-CCceeEEEe--cCCCEEEEeCCcCcc
Confidence 556788899999999999999996221 123899999985 344444443 378999999999864
No 96
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=99.04 E-value=9.3e-09 Score=92.36 Aligned_cols=38 Identities=37% Similarity=0.476 Sum_probs=34.8
Q ss_pred CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCC
Q 045695 30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY 67 (277)
Q Consensus 30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~ 67 (277)
.+++||+|||+|++|+++|+.|++ |.+|+|+|+.....
T Consensus 2 ~~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~~ 40 (387)
T COG0665 2 SMKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGG 40 (387)
T ss_pred CCcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccCC
Confidence 457899999999999999999999 99999999997654
No 97
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=99.03 E-value=7.8e-09 Score=94.11 Aligned_cols=43 Identities=30% Similarity=0.397 Sum_probs=38.3
Q ss_pred CCCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCCCCc
Q 045695 29 PVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYGNPN 71 (277)
Q Consensus 29 ~~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~~~~ 71 (277)
|+++|||||||+|.+|+++|..|++ |.||++|||.+...+...
T Consensus 1 m~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~a 44 (443)
T PTZ00363 1 MDETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESA 44 (443)
T ss_pred CCCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccc
Confidence 3568999999999999999999999 999999999988765444
No 98
>PRK08244 hypothetical protein; Provisional
Probab=99.02 E-value=4.6e-09 Score=97.59 Aligned_cols=35 Identities=37% Similarity=0.569 Sum_probs=32.8
Q ss_pred CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695 32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (277)
Q Consensus 32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~ 66 (277)
++||+|||+|++|+++|..|++ |.+|+||||.+..
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~ 37 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKET 37 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 5899999999999999999999 9999999998654
No 99
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=99.01 E-value=3e-09 Score=99.21 Aligned_cols=35 Identities=40% Similarity=0.669 Sum_probs=32.4
Q ss_pred CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695 30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (277)
Q Consensus 30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~ 64 (277)
..+|||||||||.||+.||+.+|+ |.+|+|||+..
T Consensus 2 ~~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~ 37 (618)
T PRK05192 2 PEEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNL 37 (618)
T ss_pred CccceEEEECchHHHHHHHHHHHHcCCcEEEEeccc
Confidence 347999999999999999999999 99999999874
No 100
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.01 E-value=4.7e-09 Score=95.30 Aligned_cols=39 Identities=33% Similarity=0.509 Sum_probs=35.1
Q ss_pred CCCCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695 28 QPVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (277)
Q Consensus 28 ~~~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~ 66 (277)
.++.++||+|||+|++|+++|..|++ |++|+|+||.+..
T Consensus 14 ~~~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 53 (415)
T PRK07364 14 TRSLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAE 53 (415)
T ss_pred CCccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCcc
Confidence 34557999999999999999999999 9999999999754
No 101
>PRK06126 hypothetical protein; Provisional
Probab=99.00 E-value=1.8e-08 Score=94.72 Aligned_cols=36 Identities=33% Similarity=0.542 Sum_probs=33.2
Q ss_pred CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695 30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (277)
Q Consensus 30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~ 65 (277)
+.++||+|||+|++|+++|+.|++ |++|+|+||.+.
T Consensus 5 ~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~ 41 (545)
T PRK06126 5 TSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDG 41 (545)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 457899999999999999999999 999999999854
No 102
>PLN02985 squalene monooxygenase
Probab=99.00 E-value=1.5e-08 Score=94.21 Aligned_cols=36 Identities=33% Similarity=0.466 Sum_probs=33.1
Q ss_pred CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695 30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (277)
Q Consensus 30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~ 65 (277)
...+||||||+|++|+++|+.|++ |.+|+||||...
T Consensus 41 ~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~ 77 (514)
T PLN02985 41 DGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLR 77 (514)
T ss_pred CCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCC
Confidence 457999999999999999999999 999999999743
No 103
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=99.00 E-value=5.5e-09 Score=97.06 Aligned_cols=73 Identities=23% Similarity=0.335 Sum_probs=51.4
Q ss_pred eEEECCCCeeeCHHHHHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCcc
Q 045695 188 GTIFDQNGQRHTAADLLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGAL 267 (277)
Q Consensus 188 ~~~~~~~g~~~~~~~~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~ 267 (277)
+.+++.+|.......+.+.+++.|++|+++++|++|..+++ ++.+|++. +|+. +. ++.||+|+|..
T Consensus 220 g~~~~~gG~~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~-----~~~gv~~~--~g~~--~~-----ad~vV~a~~~~ 285 (493)
T TIGR02730 220 GINYPKGGVGQIAESLVKGLEKHGGQIRYRARVTKIILENG-----KAVGVKLA--DGEK--IY-----AKRIVSNATRW 285 (493)
T ss_pred eEecCCChHHHHHHHHHHHHHHCCCEEEeCCeeeEEEecCC-----cEEEEEeC--CCCE--EE-----cCEEEECCChH
Confidence 33444555533223356677888999999999999998875 88898876 3543 33 58899999987
Q ss_pred ccHHHHh
Q 045695 268 GSPQLLM 274 (277)
Q Consensus 268 ~tp~lLl 274 (277)
.+-..|+
T Consensus 286 ~~~~~Ll 292 (493)
T TIGR02730 286 DTFGKLL 292 (493)
T ss_pred HHHHHhC
Confidence 6665443
No 104
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.98 E-value=4e-09 Score=89.42 Aligned_cols=50 Identities=24% Similarity=0.468 Sum_probs=42.7
Q ss_pred CCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCcccc
Q 045695 210 SGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGS 269 (277)
Q Consensus 210 ~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~t 269 (277)
.-++|..+++|++|+.+++ +|.||++.|.+|+...+. .+.||+|+|||+-
T Consensus 158 e~~ki~~nskvv~il~n~g-----kVsgVeymd~sgek~~~~-----~~~VVlatGGf~y 207 (477)
T KOG2404|consen 158 ELVKILLNSKVVDILRNNG-----KVSGVEYMDASGEKSKII-----GDAVVLATGGFGY 207 (477)
T ss_pred HHHhhhhcceeeeeecCCC-----eEEEEEEEcCCCCcccee-----cCceEEecCCcCc
Confidence 4689999999999996555 999999999877766554 6899999999986
No 105
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.98 E-value=9.8e-09 Score=92.57 Aligned_cols=36 Identities=36% Similarity=0.496 Sum_probs=33.4
Q ss_pred CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695 30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (277)
Q Consensus 30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~ 65 (277)
...+||+|||+|++|+++|+.|++ |.+|+||||.+.
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~ 40 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADAGLSVALVEGREP 40 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCC
Confidence 457899999999999999999999 999999999864
No 106
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.96 E-value=3.5e-08 Score=88.18 Aligned_cols=64 Identities=31% Similarity=0.419 Sum_probs=49.4
Q ss_pred HHhh-cCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceEEEEeecCCCcEEEEecCccccHHHHhccC
Q 045695 203 LLEY-ANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 277 (277)
Q Consensus 203 ~l~~-~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~i~~~~~~a~~VVlAaG~~~tp~lLl~SG 277 (277)
++.. .++.|++++++++|++|...++ .-.-|.+++ ..+...+++ ++-|++.||| .+=.||++||
T Consensus 187 l~~~l~~~~~~~~~~~~eV~~i~r~~d-----g~W~v~~~~~~~~~~~~v~-----a~FVfvGAGG-~aL~LLqksg 252 (488)
T PF06039_consen 187 LVEYLQKQKGFELHLNHEVTDIKRNGD-----GRWEVKVKDLKTGEKREVR-----AKFVFVGAGG-GALPLLQKSG 252 (488)
T ss_pred HHHHHHhCCCcEEEecCEeCeeEECCC-----CCEEEEEEecCCCCeEEEE-----CCEEEECCch-HhHHHHHHcC
Confidence 5553 4445999999999999999887 345566665 346666776 7999999999 7888888887
No 107
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.95 E-value=1.1e-08 Score=88.08 Aligned_cols=34 Identities=41% Similarity=0.726 Sum_probs=32.1
Q ss_pred ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~ 66 (277)
|||+|||+|++|+++|+.|++ |.+|+||||....
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~ 35 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFP 35 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCC
Confidence 799999999999999999999 9999999999754
No 108
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.93 E-value=1.4e-08 Score=91.56 Aligned_cols=31 Identities=45% Similarity=0.813 Sum_probs=30.3
Q ss_pred ccEEEECCChhhHHHHhhhhC-CCcEEEEcCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERG 63 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g 63 (277)
|||||||+|++|+++|+.|++ |.+|+|||+.
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 799999999999999999999 9999999997
No 109
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.93 E-value=3.3e-08 Score=92.87 Aligned_cols=37 Identities=38% Similarity=0.500 Sum_probs=34.1
Q ss_pred CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695 30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (277)
Q Consensus 30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~ 66 (277)
...+||+|||+|++|+++|..|++ |.+|+||||....
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~ 45 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTL 45 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 457899999999999999999999 9999999999654
No 110
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.93 E-value=3.9e-08 Score=89.07 Aligned_cols=34 Identities=38% Similarity=0.581 Sum_probs=32.0
Q ss_pred CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695 32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (277)
Q Consensus 32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~ 65 (277)
+|||+|||+|++|+++|+.|++ |.+|+|+|+.+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGPL 36 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCc
Confidence 5899999999999999999999 999999999863
No 111
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.92 E-value=5.8e-09 Score=96.56 Aligned_cols=38 Identities=34% Similarity=0.552 Sum_probs=35.0
Q ss_pred CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCC
Q 045695 31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG 68 (277)
Q Consensus 31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~ 68 (277)
..+||||||||.+|+++|..||+ |++|+|+||.....+
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG 40 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGG 40 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCc
Confidence 36899999999999999999999 999999999887765
No 112
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.91 E-value=9.5e-10 Score=89.86 Aligned_cols=54 Identities=20% Similarity=0.320 Sum_probs=33.3
Q ss_pred hcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccccHHHHh
Q 045695 206 YANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLM 274 (277)
Q Consensus 206 ~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~tp~lLl 274 (277)
.+++.+++++++++|+++..+++ + .-|++. ++ .++. ++.||+|+|.+..|+++.
T Consensus 91 ~~~~~~l~i~~~~~V~~v~~~~~-----~-w~v~~~--~~--~~~~-----a~~VVlAtG~~~~p~~p~ 144 (203)
T PF13738_consen 91 YAERFGLEIRFNTRVESVRRDGD-----G-WTVTTR--DG--RTIR-----ADRVVLATGHYSHPRIPD 144 (203)
T ss_dssp HHHHTTGGEETS--EEEEEEETT-----T-EEEEET--TS---EEE-----EEEEEE---SSCSB---S
T ss_pred HHhhcCcccccCCEEEEEEEecc-----E-EEEEEE--ec--ceee-----eeeEEEeeeccCCCCccc
Confidence 56667888999999999999987 3 334443 45 3444 589999999998998763
No 113
>PRK06847 hypothetical protein; Provisional
Probab=98.91 E-value=2.6e-08 Score=89.15 Aligned_cols=37 Identities=27% Similarity=0.358 Sum_probs=33.2
Q ss_pred CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695 30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (277)
Q Consensus 30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~ 66 (277)
....||+|||+|++|+++|+.|++ |++|+|+||....
T Consensus 2 ~~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~ 39 (375)
T PRK06847 2 AAVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEW 39 (375)
T ss_pred CCcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence 346799999999999999999999 9999999998653
No 114
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.91 E-value=2.8e-08 Score=89.38 Aligned_cols=37 Identities=35% Similarity=0.613 Sum_probs=33.9
Q ss_pred CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695 30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (277)
Q Consensus 30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~ 66 (277)
++++||+|||+|++|+++|+.|++ |.+|+|+||+...
T Consensus 3 ~~~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07608 3 HMKFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPP 40 (388)
T ss_pred CccCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCc
Confidence 347899999999999999999999 9999999999664
No 115
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.90 E-value=4.5e-09 Score=92.78 Aligned_cols=36 Identities=36% Similarity=0.589 Sum_probs=31.4
Q ss_pred CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCC
Q 045695 32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY 67 (277)
Q Consensus 32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~ 67 (277)
+|||+|||+|++|+++|..|++ |++|+|+||.+...
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~ 37 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPR 37 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCC
T ss_pred CceEEEECCCHHHHHHHHHHHhcccccccchhccccc
Confidence 5899999999999999999999 99999999987653
No 116
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.90 E-value=4.7e-08 Score=88.06 Aligned_cols=36 Identities=39% Similarity=0.517 Sum_probs=33.1
Q ss_pred CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695 30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (277)
Q Consensus 30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~ 65 (277)
+.+|||||||+|++|+++|..|++ |.+|+|||+.+.
T Consensus 3 ~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~ 39 (391)
T PRK08020 3 NQPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAP 39 (391)
T ss_pred cccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCC
Confidence 457999999999999999999999 999999999853
No 117
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.89 E-value=3.2e-09 Score=92.77 Aligned_cols=55 Identities=24% Similarity=0.354 Sum_probs=41.9
Q ss_pred hhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeC----CCce-------EEEEeecCCCcEEEEecCccc
Q 045695 205 EYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDA----TGAK-------HRAYLKNGPKNEIIVSAGALG 268 (277)
Q Consensus 205 ~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~----~g~~-------~~i~~~~~~a~~VVlAaG~~~ 268 (277)
..++..|++|.++..+.++++++++ .|.||...|- +|.. -.+ .++..|+|-|.-+
T Consensus 191 ~kAEe~GvEiyPg~aaSevly~edg----sVkGiaT~D~GI~k~G~pKd~FerGme~-----hak~TifAEGc~G 256 (621)
T KOG2415|consen 191 EKAEELGVEIYPGFAASEVLYDEDG----SVKGIATNDVGISKDGAPKDTFERGMEF-----HAKVTIFAEGCHG 256 (621)
T ss_pred HHHHhhCceeccccchhheeEcCCC----cEeeEeeccccccCCCCcccccccccee-----cceeEEEeccccc
Confidence 4778899999999999999999887 9999999862 2321 122 2688888877644
No 118
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.89 E-value=2.5e-08 Score=94.10 Aligned_cols=58 Identities=19% Similarity=0.195 Sum_probs=47.4
Q ss_pred HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceEEEEeecCCCcEEEEecCcccc
Q 045695 203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS 269 (277)
Q Consensus 203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~i~~~~~~a~~VVlAaG~~~t 269 (277)
+...+.+.|++|+.++.+++|+.+++| +|+||.+.+ .+++.+.+. ++.|||||||++.
T Consensus 132 L~~~~~~~gi~i~~~~~~~~Li~~~~g----~v~Gv~~~~~~~g~~~~i~-----AkaVVLATGG~~~ 190 (570)
T PRK05675 132 LYQGNLKNGTTFLNEWYAVDLVKNQDG----AVVGVIAICIETGETVYIK-----SKATVLATGGAGR 190 (570)
T ss_pred HHHHHhccCCEEEECcEEEEEEEcCCC----eEEEEEEEEcCCCcEEEEe-----cCeEEECCCCccc
Confidence 445566789999999999999987554 999999976 457666665 7899999999874
No 119
>PRK06184 hypothetical protein; Provisional
Probab=98.88 E-value=6.4e-08 Score=90.16 Aligned_cols=35 Identities=34% Similarity=0.589 Sum_probs=32.8
Q ss_pred CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695 32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (277)
Q Consensus 32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~ 66 (277)
++||+|||+|++|+++|..|++ |.+|+||||.+..
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~ 38 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEP 38 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 6899999999999999999999 9999999998654
No 120
>PRK06834 hypothetical protein; Provisional
Probab=98.88 E-value=3.6e-08 Score=91.38 Aligned_cols=36 Identities=31% Similarity=0.457 Sum_probs=33.0
Q ss_pred CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695 31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (277)
Q Consensus 31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~ 66 (277)
.++||||||+|++|+++|+.|++ |.+|+||||....
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~ 38 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQ 38 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 36899999999999999999999 9999999998653
No 121
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.87 E-value=2e-08 Score=92.68 Aligned_cols=35 Identities=20% Similarity=0.283 Sum_probs=32.5
Q ss_pred CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695 30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (277)
Q Consensus 30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~ 64 (277)
..+|||||||+|++|+.+|.+|++ |++|+|+|+.+
T Consensus 2 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~ 37 (471)
T PRK06467 2 EIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYS 37 (471)
T ss_pred CccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 347999999999999999999999 99999999874
No 122
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.87 E-value=9.1e-09 Score=91.29 Aligned_cols=49 Identities=16% Similarity=0.387 Sum_probs=36.9
Q ss_pred hcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCcccc
Q 045695 206 YANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGS 269 (277)
Q Consensus 206 ~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~t 269 (277)
....+|++|+ +.+|++|+.+++ +|.||... +|.. +. ++.||+|||.|..
T Consensus 105 l~~~~nl~i~-~~~V~~l~~e~~-----~v~GV~~~--~g~~--~~-----a~~vVlaTGtfl~ 153 (392)
T PF01134_consen 105 LESHPNLTII-QGEVTDLIVENG-----KVKGVVTK--DGEE--IE-----ADAVVLATGTFLN 153 (392)
T ss_dssp HHTSTTEEEE-ES-EEEEEECTT-----EEEEEEET--TSEE--EE-----ECEEEE-TTTGBT
T ss_pred HhcCCCeEEE-EcccceEEecCC-----eEEEEEeC--CCCE--Ee-----cCEEEEecccccC
Confidence 3456899996 679999999887 99998886 4543 43 5999999999554
No 123
>PRK07045 putative monooxygenase; Reviewed
Probab=98.87 E-value=6.2e-08 Score=87.28 Aligned_cols=37 Identities=35% Similarity=0.439 Sum_probs=34.0
Q ss_pred CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695 30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (277)
Q Consensus 30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~ 66 (277)
+.++||+|||+|++|+++|+.|++ |.+|+|+||.+..
T Consensus 3 ~~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07045 3 NNPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARN 40 (388)
T ss_pred CceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcc
Confidence 356899999999999999999999 9999999999764
No 124
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.86 E-value=2.2e-08 Score=91.88 Aligned_cols=38 Identities=26% Similarity=0.376 Sum_probs=34.3
Q ss_pred CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCC
Q 045695 30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY 67 (277)
Q Consensus 30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~ 67 (277)
....+|+|||+|++|+++|++|.+ |++|+|+||+....
T Consensus 8 ~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vG 46 (461)
T PLN02172 8 INSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVG 46 (461)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCc
Confidence 346799999999999999999999 99999999997654
No 125
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.85 E-value=4.8e-08 Score=88.15 Aligned_cols=37 Identities=30% Similarity=0.453 Sum_probs=33.4
Q ss_pred CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695 30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (277)
Q Consensus 30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~ 66 (277)
.+..||+|||+|++|+++|..|++ |.+|+|+||.+..
T Consensus 2 ~~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~ 39 (396)
T PRK08163 2 TKVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEI 39 (396)
T ss_pred CCCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCccc
Confidence 346799999999999999999999 9999999998643
No 126
>PRK07190 hypothetical protein; Provisional
Probab=98.83 E-value=3.3e-08 Score=91.53 Aligned_cols=37 Identities=22% Similarity=0.366 Sum_probs=33.7
Q ss_pred CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695 30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (277)
Q Consensus 30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~ 66 (277)
+..+||||||+|++|+++|+.|++ |.+|+||||.+.+
T Consensus 3 ~~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~ 40 (487)
T PRK07190 3 TQVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGP 40 (487)
T ss_pred CccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence 346899999999999999999999 9999999999754
No 127
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.82 E-value=4.6e-08 Score=88.24 Aligned_cols=34 Identities=32% Similarity=0.410 Sum_probs=32.3
Q ss_pred CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695 32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (277)
Q Consensus 32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~ 65 (277)
.+||+|||+|++|+++|+.|++ |++|+|+||.+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence 5799999999999999999999 999999999974
No 128
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.82 E-value=6.2e-08 Score=87.62 Aligned_cols=33 Identities=33% Similarity=0.540 Sum_probs=31.2
Q ss_pred ccEEEECCChhhHHHHhhhhC-C--CcEEEEcCCCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-N--ASVLLLERGGS 65 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-g--~~VlvlE~g~~ 65 (277)
|||+|||+|++|+++|..|++ | .+|+|+||.+.
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~ 37 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPA 37 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCc
Confidence 799999999999999999999 7 89999999864
No 129
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.82 E-value=8e-08 Score=88.82 Aligned_cols=34 Identities=38% Similarity=0.635 Sum_probs=32.3
Q ss_pred CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCC
Q 045695 30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERG 63 (277)
Q Consensus 30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g 63 (277)
..+||+||||+|++|+.+|..|++ |++|+|+|++
T Consensus 2 ~~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~ 36 (472)
T PRK05976 2 AKEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG 36 (472)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc
Confidence 458999999999999999999999 9999999986
No 130
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.82 E-value=9.5e-08 Score=87.37 Aligned_cols=40 Identities=28% Similarity=0.396 Sum_probs=35.7
Q ss_pred CCCCccEEEECCChhhHHHHhhhhC-CCc-EEEEcCCCCCCC
Q 045695 29 PVSYYDYIIIGGGTAGCPLAATLSQ-NAS-VLLLERGGSPYG 68 (277)
Q Consensus 29 ~~~~~DviIIGsG~aG~~aA~~La~-g~~-VlvlE~g~~~~~ 68 (277)
..+.+||+|||+|++|+++|+.|.+ |.+ ++|+||.....+
T Consensus 5 ~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg 46 (443)
T COG2072 5 VATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGG 46 (443)
T ss_pred cCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCC
Confidence 3568899999999999999999999 987 999999987654
No 131
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.81 E-value=1e-07 Score=85.49 Aligned_cols=33 Identities=33% Similarity=0.609 Sum_probs=31.5
Q ss_pred cEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (277)
Q Consensus 34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~ 66 (277)
||+|||+|++|+++|+.|++ |.+|+|+||.+..
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~ 34 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAE 34 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCcc
Confidence 89999999999999999999 9999999999764
No 132
>PRK08013 oxidoreductase; Provisional
Probab=98.81 E-value=1.1e-07 Score=86.11 Aligned_cols=35 Identities=31% Similarity=0.440 Sum_probs=32.8
Q ss_pred CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695 32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (277)
Q Consensus 32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~ 66 (277)
++||+|||+|++|+++|+.|++ |++|+||||.+..
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~ 38 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPE 38 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCc
Confidence 5899999999999999999999 9999999998754
No 133
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.80 E-value=1.2e-08 Score=94.94 Aligned_cols=72 Identities=19% Similarity=0.216 Sum_probs=49.7
Q ss_pred EEECCCCeeeCHHHHHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccc
Q 045695 189 TIFDQNGQRHTAADLLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALG 268 (277)
Q Consensus 189 ~~~~~~g~~~~~~~~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~ 268 (277)
.+++..|.......+...+++.|++|+++++|++|..+++ ++++|++. +|+. +. ++.||+|++...
T Consensus 211 ~~~~~gG~~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~-----~~~~V~~~--~g~~--~~-----ad~VI~a~~~~~ 276 (502)
T TIGR02734 211 VWFPRGGTGALVAAMAKLAEDLGGELRLNAEVIRIETEGG-----RATAVHLA--DGER--LD-----ADAVVSNADLHH 276 (502)
T ss_pred EEEcCCCHHHHHHHHHHHHHHCCCEEEECCeEEEEEeeCC-----EEEEEEEC--CCCE--EE-----CCEEEECCcHHH
Confidence 3344444432222355566778999999999999998876 88888775 4543 33 688999998767
Q ss_pred cHHHHh
Q 045695 269 SPQLLM 274 (277)
Q Consensus 269 tp~lLl 274 (277)
+...|+
T Consensus 277 ~~~~l~ 282 (502)
T TIGR02734 277 TYRRLL 282 (502)
T ss_pred HHHHhc
Confidence 765554
No 134
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.80 E-value=7.7e-08 Score=87.00 Aligned_cols=32 Identities=38% Similarity=0.607 Sum_probs=30.5
Q ss_pred ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~ 64 (277)
+||||||+|++|+++|+.|++ |++|+||||..
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~ 33 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKP 33 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCC
Confidence 599999999999999999999 99999999974
No 135
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.80 E-value=6.8e-08 Score=88.47 Aligned_cols=34 Identities=44% Similarity=0.616 Sum_probs=32.1
Q ss_pred CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695 32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (277)
Q Consensus 32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~ 65 (277)
+|||||||||++|+.+|..|++ |++|+|+||++.
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~ 37 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKA 37 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCc
Confidence 6999999999999999999999 999999999853
No 136
>PRK09126 hypothetical protein; Provisional
Probab=98.80 E-value=1.4e-07 Score=85.04 Aligned_cols=35 Identities=31% Similarity=0.500 Sum_probs=33.1
Q ss_pred CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695 32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (277)
Q Consensus 32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~ 66 (277)
++||||||+|++|+++|+.|++ |++|+|+||....
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~ 38 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLA 38 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcc
Confidence 6899999999999999999999 9999999999763
No 137
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.79 E-value=2e-07 Score=83.96 Aligned_cols=36 Identities=36% Similarity=0.465 Sum_probs=33.0
Q ss_pred CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695 30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (277)
Q Consensus 30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~ 65 (277)
...+||||||+|++|+++|+.|++ |.+|+|+|+.+.
T Consensus 5 ~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~ 41 (388)
T PRK07494 5 KEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPP 41 (388)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCC
Confidence 346899999999999999999999 999999999854
No 138
>PRK07208 hypothetical protein; Provisional
Probab=98.79 E-value=1e-07 Score=88.25 Aligned_cols=39 Identities=31% Similarity=0.332 Sum_probs=35.1
Q ss_pred CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCC
Q 045695 30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG 68 (277)
Q Consensus 30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~ 68 (277)
....||+|||+|++|+++|+.|++ |.+|+|+|+.+...+
T Consensus 2 ~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG 41 (479)
T PRK07208 2 TNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGG 41 (479)
T ss_pred CCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence 456799999999999999999999 999999999877654
No 139
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.79 E-value=1.8e-08 Score=83.58 Aligned_cols=32 Identities=31% Similarity=0.525 Sum_probs=30.3
Q ss_pred cEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (277)
Q Consensus 34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~ 65 (277)
+++|||+|++|+++|+.|.+ |..|+|+|||.-
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~G 35 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRG 35 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCC
Confidence 69999999999999999999 999999999954
No 140
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.79 E-value=1.2e-07 Score=85.16 Aligned_cols=33 Identities=39% Similarity=0.660 Sum_probs=31.3
Q ss_pred cEEEECCChhhHHHHhhhhC-C-CcEEEEcCCCCC
Q 045695 34 DYIIIGGGTAGCPLAATLSQ-N-ASVLLLERGGSP 66 (277)
Q Consensus 34 DviIIGsG~aG~~aA~~La~-g-~~VlvlE~g~~~ 66 (277)
||+|||+|++|+++|+.|++ | .+|+|+||....
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~ 35 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPS 35 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCcc
Confidence 89999999999999999999 9 999999999664
No 141
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.77 E-value=1.3e-07 Score=87.07 Aligned_cols=35 Identities=31% Similarity=0.466 Sum_probs=32.5
Q ss_pred CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695 31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (277)
Q Consensus 31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~ 65 (277)
.+|||+|||+|++|+.+|+.|++ |++|+|+|++..
T Consensus 4 ~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~ 39 (461)
T PRK05249 4 YDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRN 39 (461)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCEEEEEecccc
Confidence 46999999999999999999999 999999999744
No 142
>PLN02697 lycopene epsilon cyclase
Probab=98.77 E-value=9.4e-08 Score=88.88 Aligned_cols=33 Identities=33% Similarity=0.466 Sum_probs=31.2
Q ss_pred CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCC
Q 045695 31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERG 63 (277)
Q Consensus 31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g 63 (277)
..|||||||+|++|+++|+.|++ |++|+|||+.
T Consensus 107 ~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~ 140 (529)
T PLN02697 107 GTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPD 140 (529)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCcEEEecCc
Confidence 46999999999999999999999 9999999986
No 143
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.75 E-value=8.4e-08 Score=86.45 Aligned_cols=32 Identities=44% Similarity=0.649 Sum_probs=31.1
Q ss_pred CccEEEECCChhhHHHHhhhhC-CCcEEEEcCC
Q 045695 32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERG 63 (277)
Q Consensus 32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g 63 (277)
.+||+|||+|++|+++|..|++ |++|+||||.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Confidence 5799999999999999999999 9999999998
No 144
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.75 E-value=8.3e-08 Score=88.08 Aligned_cols=32 Identities=31% Similarity=0.503 Sum_probs=30.9
Q ss_pred CccEEEECCChhhHHHHhhhhC-CCcEEEEcCC
Q 045695 32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERG 63 (277)
Q Consensus 32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g 63 (277)
+||++|||+|++|+.+|+.|++ |++|+|+|++
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~ 34 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP 34 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Confidence 6999999999999999999999 9999999985
No 145
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.75 E-value=8.4e-08 Score=88.44 Aligned_cols=35 Identities=31% Similarity=0.468 Sum_probs=32.5
Q ss_pred CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695 30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (277)
Q Consensus 30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~ 64 (277)
+.+|||||||+|++|+.+|..|++ |.+|+|+|++.
T Consensus 2 ~~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~ 37 (462)
T PRK06416 2 AFEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK 37 (462)
T ss_pred CccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc
Confidence 347999999999999999999999 99999999874
No 146
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.74 E-value=2.4e-07 Score=83.36 Aligned_cols=33 Identities=33% Similarity=0.631 Sum_probs=31.3
Q ss_pred CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695 32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (277)
Q Consensus 32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~ 64 (277)
++||+|||+|++|+++|+.|++ |++|+|+|+.+
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~ 36 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE 36 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 4899999999999999999999 99999999875
No 147
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.73 E-value=3.2e-07 Score=86.36 Aligned_cols=37 Identities=27% Similarity=0.464 Sum_probs=34.0
Q ss_pred CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695 30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (277)
Q Consensus 30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~ 66 (277)
+.++||+|||+|++|+++|+.|++ |.+|+|+||....
T Consensus 21 ~~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~ 58 (547)
T PRK08132 21 PARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTL 58 (547)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence 467899999999999999999999 9999999998643
No 148
>PRK07236 hypothetical protein; Provisional
Probab=98.72 E-value=1.9e-07 Score=84.09 Aligned_cols=35 Identities=29% Similarity=0.287 Sum_probs=32.3
Q ss_pred CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695 31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (277)
Q Consensus 31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~ 65 (277)
+..||+|||+|++|+++|+.|++ |.+|+|+||.+.
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 35799999999999999999999 999999999854
No 149
>PRK07588 hypothetical protein; Provisional
Probab=98.72 E-value=1.8e-07 Score=84.37 Aligned_cols=32 Identities=34% Similarity=0.385 Sum_probs=30.5
Q ss_pred cEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (277)
Q Consensus 34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~ 65 (277)
||+|||+|++|+++|+.|++ |++|+|+||.+.
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPE 34 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeCCCC
Confidence 89999999999999999999 999999999854
No 150
>PRK11445 putative oxidoreductase; Provisional
Probab=98.72 E-value=3.3e-07 Score=81.51 Aligned_cols=34 Identities=35% Similarity=0.525 Sum_probs=31.2
Q ss_pred ccEEEECCChhhHHHHhhhhCCCcEEEEcCCCCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQNASVLLLERGGSP 66 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~g~~VlvlE~g~~~ 66 (277)
|||+|||+|++|+++|+.|++..+|+||||.+..
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~~~V~liE~~~~~ 35 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGKMKVIAIDKKHQC 35 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhccCCEEEEECCCcc
Confidence 7999999999999999999887899999998653
No 151
>PTZ00367 squalene epoxidase; Provisional
Probab=98.71 E-value=2.1e-07 Score=87.37 Aligned_cols=34 Identities=50% Similarity=0.660 Sum_probs=32.3
Q ss_pred CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695 31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (277)
Q Consensus 31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~ 64 (277)
.+|||||||+|++|+++|+.|++ |++|+|+||..
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 57999999999999999999999 99999999975
No 152
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=98.70 E-value=2.7e-07 Score=87.11 Aligned_cols=57 Identities=18% Similarity=0.270 Sum_probs=46.6
Q ss_pred HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceEEEEeecCCCcEEEEecCcccc
Q 045695 203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS 269 (277)
Q Consensus 203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~i~~~~~~a~~VVlAaG~~~t 269 (277)
+...+.+.|++|++++.|++|+.+++ +|+||.+.+ .+++.+.+. ++.|||||||++.
T Consensus 125 L~~~~~~~gi~i~~~~~~~~Li~~~g-----~v~Ga~~~~~~~g~~~~i~-----AkaVILATGG~~~ 182 (565)
T TIGR01816 125 LYQQNLKADTSFFNEYFALDLLMEDG-----ECRGVIAYCLETGEIHRFR-----AKAVVLATGGYGR 182 (565)
T ss_pred HHHHHHhCCCEEEeccEEEEEEeeCC-----EEEEEEEEEcCCCcEEEEE-----eCeEEECCCCccc
Confidence 44556678999999999999998754 999999976 356666665 6999999999874
No 153
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.69 E-value=2.4e-07 Score=83.57 Aligned_cols=34 Identities=29% Similarity=0.423 Sum_probs=32.2
Q ss_pred CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695 32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (277)
Q Consensus 32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~ 65 (277)
.+||+|||+|++|+++|+.|++ |++|+|+||.+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR 36 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 5799999999999999999999 999999999975
No 154
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=98.69 E-value=1.5e-07 Score=86.86 Aligned_cols=68 Identities=19% Similarity=0.217 Sum_probs=51.9
Q ss_pred eeeEEECCCCeeeCHHH---HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEE
Q 045695 186 IGGTIFDQNGQRHTAAD---LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIV 262 (277)
Q Consensus 186 ~~~~~~~~~g~~~~~~~---~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVl 262 (277)
.++.+.+.||..-+... +...+++.|+.|.++|.|++|....+ +..||+.. .|..+ +..||-
T Consensus 173 ~g~Ly~P~DG~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~-----~~~gVeT~--~G~ie--------t~~~VN 237 (856)
T KOG2844|consen 173 YGGLYSPGDGVMDPAGLCQALARAASALGALVIENCPVTGLHVETD-----KFGGVETP--HGSIE--------TECVVN 237 (856)
T ss_pred eeeeecCCCcccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecC-----Cccceecc--Cccee--------cceEEe
Confidence 35566677887655543 44578889999999999999999887 55588887 46543 378999
Q ss_pred ecCccc
Q 045695 263 SAGALG 268 (277)
Q Consensus 263 AaG~~~ 268 (277)
|||-+.
T Consensus 238 aaGvWA 243 (856)
T KOG2844|consen 238 AAGVWA 243 (856)
T ss_pred chhHHH
Confidence 999865
No 155
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.68 E-value=3.4e-07 Score=84.54 Aligned_cols=33 Identities=24% Similarity=0.486 Sum_probs=31.4
Q ss_pred CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCC
Q 045695 31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERG 63 (277)
Q Consensus 31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g 63 (277)
.+||+||||+|++|++||..|++ |.+|+|+|++
T Consensus 3 ~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~ 36 (466)
T PRK07818 3 THYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK 36 (466)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence 36999999999999999999999 9999999986
No 156
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.68 E-value=3.6e-07 Score=84.38 Aligned_cols=32 Identities=38% Similarity=0.539 Sum_probs=30.6
Q ss_pred CccEEEECCChhhHHHHhhhhC-CCcEEEEcCC
Q 045695 32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERG 63 (277)
Q Consensus 32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g 63 (277)
+|||+|||+|++|+.||..|++ |++|+|+|+.
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~ 35 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGR 35 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence 5999999999999999999999 9999999974
No 157
>PLN02507 glutathione reductase
Probab=98.66 E-value=4.8e-07 Score=84.13 Aligned_cols=34 Identities=26% Similarity=0.332 Sum_probs=31.7
Q ss_pred CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCC
Q 045695 30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERG 63 (277)
Q Consensus 30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g 63 (277)
..+||+||||+|++|..+|.+|++ |.+|+|+|+.
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~ 57 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICELP 57 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 457999999999999999999999 9999999973
No 158
>PLN02463 lycopene beta cyclase
Probab=98.66 E-value=1.6e-07 Score=85.85 Aligned_cols=36 Identities=28% Similarity=0.474 Sum_probs=32.7
Q ss_pred CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695 30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (277)
Q Consensus 30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~ 65 (277)
...|||+|||+|++|+++|..|++ |++|+|||+.+.
T Consensus 26 ~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~ 62 (447)
T PLN02463 26 SRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPL 62 (447)
T ss_pred ccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCcc
Confidence 346899999999999999999999 999999999743
No 159
>PRK06753 hypothetical protein; Provisional
Probab=98.65 E-value=6.7e-07 Score=80.03 Aligned_cols=33 Identities=33% Similarity=0.458 Sum_probs=31.3
Q ss_pred cEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (277)
Q Consensus 34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~ 66 (277)
||+|||+|++|+++|+.|++ |++|+|+||.+..
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~ 35 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESV 35 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence 79999999999999999999 9999999999764
No 160
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.65 E-value=5.2e-07 Score=80.94 Aligned_cols=33 Identities=21% Similarity=0.353 Sum_probs=31.1
Q ss_pred ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~ 65 (277)
+||+|||+|++|+++|+.|++ |++|+|+|+.+.
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~ 35 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKSV 35 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCC
Confidence 699999999999999999999 999999999853
No 161
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.65 E-value=2.4e-07 Score=80.09 Aligned_cols=32 Identities=41% Similarity=0.577 Sum_probs=30.7
Q ss_pred ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~ 64 (277)
|||+|||+|++|+++|..|++ |.+|+|+|++.
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~ 33 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME 33 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC
Confidence 799999999999999999999 99999999985
No 162
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.64 E-value=7.1e-07 Score=80.91 Aligned_cols=32 Identities=38% Similarity=0.590 Sum_probs=30.9
Q ss_pred CccEEEECCChhhHHHHhhhhC-CCcEEEEcCC
Q 045695 32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERG 63 (277)
Q Consensus 32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g 63 (277)
.+||+|||+|++|+++|..|++ |++|+|+|+.
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~ 36 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQ 36 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence 6899999999999999999999 9999999996
No 163
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.61 E-value=2.4e-08 Score=93.01 Aligned_cols=35 Identities=26% Similarity=0.377 Sum_probs=29.3
Q ss_pred cEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCC
Q 045695 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG 68 (277)
Q Consensus 34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~ 68 (277)
.|+|||+|++|+++|+.|.+ |.+|+++||.+...+
T Consensus 3 rVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG 38 (531)
T PF00743_consen 3 RVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGG 38 (531)
T ss_dssp EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSG
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCc
Confidence 58999999999999999999 999999999987654
No 164
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.60 E-value=3.7e-07 Score=85.32 Aligned_cols=33 Identities=42% Similarity=0.711 Sum_probs=31.0
Q ss_pred ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~ 65 (277)
|||||||+|.+|+.+|..+++ |.+|+|||++..
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~ 34 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLD 34 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccc
Confidence 799999999999999999999 999999999743
No 165
>PRK06996 hypothetical protein; Provisional
Probab=98.60 E-value=8.4e-07 Score=80.25 Aligned_cols=36 Identities=28% Similarity=0.498 Sum_probs=32.1
Q ss_pred CCCccEEEECCChhhHHHHhhhhC-C----CcEEEEcCCCC
Q 045695 30 VSYYDYIIIGGGTAGCPLAATLSQ-N----ASVLLLERGGS 65 (277)
Q Consensus 30 ~~~~DviIIGsG~aG~~aA~~La~-g----~~VlvlE~g~~ 65 (277)
.+++||+|||+|++|+++|+.|++ | ++|+|+|+...
T Consensus 9 ~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~ 49 (398)
T PRK06996 9 APDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREP 49 (398)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCC
Confidence 457899999999999999999999 8 36999999854
No 166
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.60 E-value=6.2e-07 Score=81.77 Aligned_cols=35 Identities=37% Similarity=0.603 Sum_probs=33.0
Q ss_pred CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695 30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (277)
Q Consensus 30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~ 64 (277)
..+||+||||+|++|-.+|.++++ |.||.++|++.
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~ 37 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGE 37 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecC
Confidence 458999999999999999999999 99999999995
No 167
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.59 E-value=5.1e-07 Score=84.44 Aligned_cols=34 Identities=24% Similarity=0.439 Sum_probs=31.0
Q ss_pred CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCC
Q 045695 30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERG 63 (277)
Q Consensus 30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g 63 (277)
...|||+|||||++|+++|..|++ |++|+|+|+.
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~ 243 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER 243 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Confidence 447999999999999999999999 9999999753
No 168
>PRK05868 hypothetical protein; Validated
Probab=98.57 E-value=1.5e-06 Score=77.86 Aligned_cols=33 Identities=27% Similarity=0.320 Sum_probs=31.1
Q ss_pred cEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (277)
Q Consensus 34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~ 66 (277)
||+|||+|++|+++|+.|++ |++|+|+||.+..
T Consensus 3 ~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~ 36 (372)
T PRK05868 3 TVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL 36 (372)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence 89999999999999999999 9999999998653
No 169
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.55 E-value=2.3e-06 Score=85.77 Aligned_cols=63 Identities=22% Similarity=0.173 Sum_probs=46.1
Q ss_pred HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccccHHHHhcc
Q 045695 203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLS 276 (277)
Q Consensus 203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~tp~lLl~S 276 (277)
++...++.|+++++++.|.++.-+ + ++.+|++...++...++. ++.|+++.|-.-...|+...
T Consensus 357 l~~~L~~~GV~i~~~~~v~~i~g~-~-----~v~~V~l~~~~g~~~~i~-----~D~V~va~G~~Pnt~L~~~l 419 (985)
T TIGR01372 357 ARAEARELGIEVLTGHVVAATEGG-K-----RVSGVAVARNGGAGQRLE-----ADALAVSGGWTPVVHLFSQR 419 (985)
T ss_pred HHHHHHHcCCEEEcCCeEEEEecC-C-----cEEEEEEEecCCceEEEE-----CCEEEEcCCcCchhHHHHhc
Confidence 445566789999999999998633 2 777888874334445565 69999999987777776544
No 170
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.55 E-value=8.2e-07 Score=82.98 Aligned_cols=33 Identities=24% Similarity=0.526 Sum_probs=30.5
Q ss_pred CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcC
Q 045695 30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLER 62 (277)
Q Consensus 30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~ 62 (277)
...|||+|||+|++|+++|..|++ |++|+|+|.
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~ 243 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE 243 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec
Confidence 447999999999999999999999 999999974
No 171
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.55 E-value=1.3e-06 Score=77.78 Aligned_cols=200 Identities=18% Similarity=0.197 Sum_probs=102.3
Q ss_pred cCCCCCCccEEEECCChhhHHHHhhhhC------CCcEEEEcCCCCCCCCCccccchhhhhhcCCCCCCCccccccCCCc
Q 045695 26 AAQPVSYYDYIIIGGGTAGCPLAATLSQ------NASVLLLERGGSPYGNPNITNLGSFGAALSDLSSTSPSQRFISEDG 99 (277)
Q Consensus 26 ~~~~~~~~DviIIGsG~aG~~aA~~La~------g~~VlvlE~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (277)
+..+...+|+||||+|++|+.+|++++. ..+|++||+|.......... .. -++..+..-.
T Consensus 12 ~~~~~~~~~vvivgag~~g~f~a~~~s~~ar~~~~~~i~~vd~g~~~~~r~~~~----~~----------~~~~~c~~~~ 77 (486)
T COG2509 12 EALMNAALDVVIVGAGPAGLFAAYELSGDARKVPILKIYVVDVGLDIEQRLCPK----DE----------KKLEKCPKCD 77 (486)
T ss_pred HHHhhhccceEEECCCchHHHHHHHHhhhcccCCceEEEEEEeccchhhhhccc----cc----------cchhhcCCCC
Confidence 4455678999999999999999999984 36899999997653211100 00 0000000000
Q ss_pred eeecCCceecccccccCeeEe-cCCh-hhhhc--CCCChhhHhhHHHH----hhhhcccCCC----CchhHHHHH-HHHH
Q 045695 100 VINSRARVLGGGSCLNAGFYT-RAAP-YYVRE--TGWDERLVNESYQW----VEKVVAFEPP----MRQWQSAVR-DGLV 166 (277)
Q Consensus 100 ~~~~~~~~~GG~s~~~~~~~~-~~~~-~~~~~--~gw~~~~~~~~~~~----~~~~~~~~~~----~~~~~~~~~-~~~~ 166 (277)
.-....++||.+.+..+.+- ++.. .+++. .+|. ++++. .+..+++... ..+....+. ..+.
T Consensus 78 -~~~I~~G~GgaG~fs~g~lnl~P~~Gg~~~~~~~d~~-----~~~~~~~~vd~~~vqfG~~g~~~~~~~~e~ikd~e~~ 151 (486)
T COG2509 78 -PCPIVIGFGGAGLFSDGILNLRPIRGGDVHERTKDTD-----EFWELVNLVDESNVQFGAPGAGTFSDLTEQIKDIEFR 151 (486)
T ss_pred -CceeEecccccccccccceecccccccchhhhhCChH-----HHHHHHhccchhheecCCCcCcccCCchhhhhHHHHH
Confidence 11122556777777666554 2221 11111 0111 11111 1112222211 122223333 2233
Q ss_pred HcCCCCCCCccccCCCCeeeeeEEECCCCeeeCHHHHHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCc
Q 045695 167 EVGVLPYNGFTYDHLYGTKIGGTIFDQNGQRHTAADLLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGA 246 (277)
Q Consensus 167 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~ 246 (277)
+.|.+..- ........| ++.-+.....+.+..+..|++|+++++|++|++.++ .+.+|... +|.
T Consensus 152 aa~a~~ei----l~~~~rHiG-----TD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~-----~~~~v~~~--~g~ 215 (486)
T COG2509 152 AAGAGEEI----LPIYQRHIG-----TDILPKVVKNIREYLESLGGEIRFNTEVEDIEIEDN-----EVLGVKLT--KGE 215 (486)
T ss_pred HhCCCcee----eeccccccC-----ccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEecCC-----ceEEEEcc--CCc
Confidence 34432100 000000111 111112222355677888999999999999999987 66677766 454
Q ss_pred eEEEEeecCCCcEEEEecCccc
Q 045695 247 KHRAYLKNGPKNEIIVSAGALG 268 (277)
Q Consensus 247 ~~~i~~~~~~a~~VVlAaG~~~ 268 (277)
. +. ++.||||-|=.+
T Consensus 216 ~--i~-----~~~vvlA~Grsg 230 (486)
T COG2509 216 E--IE-----ADYVVLAPGRSG 230 (486)
T ss_pred E--Ee-----cCEEEEccCcch
Confidence 3 33 589999999643
No 172
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.54 E-value=8.7e-07 Score=82.88 Aligned_cols=76 Identities=18% Similarity=0.181 Sum_probs=54.2
Q ss_pred eeEEECCCCeeeCHHH---HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeC-CCceEEEEeecCCCcEEEE
Q 045695 187 GGTIFDQNGQRHTAAD---LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDA-TGAKHRAYLKNGPKNEIIV 262 (277)
Q Consensus 187 ~~~~~~~~g~~~~~~~---~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~-~g~~~~i~~~~~~a~~VVl 262 (277)
++.+++ +|...+... +...+.+.|++|+++++|++|..+++ ++.+|++.+. +++...+. ++.||+
T Consensus 116 ga~~~~-dg~vdp~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~~~-----~v~gv~v~~~~~g~~~~i~-----a~~VVn 184 (516)
T TIGR03377 116 GAVKVP-DGTVDPFRLVAANVLDAQEHGARIFTYTKVTGLIREGG-----RVTGVKVEDHKTGEEERIE-----AQVVIN 184 (516)
T ss_pred EEEEeC-CcEECHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEECC-----EEEEEEEEEcCCCcEEEEE-----cCEEEE
Confidence 444444 665433322 44567778999999999999998776 8999999763 45555665 699999
Q ss_pred ecCccccHHHHh
Q 045695 263 SAGALGSPQLLM 274 (277)
Q Consensus 263 AaG~~~tp~lLl 274 (277)
|||. .+..++.
T Consensus 185 AaG~-wa~~l~~ 195 (516)
T TIGR03377 185 AAGI-WAGRIAE 195 (516)
T ss_pred CCCc-chHHHHH
Confidence 9998 4566654
No 173
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.54 E-value=3.2e-07 Score=83.35 Aligned_cols=37 Identities=30% Similarity=0.362 Sum_probs=33.7
Q ss_pred CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCC
Q 045695 31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY 67 (277)
Q Consensus 31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~ 67 (277)
+.-+|+|||+|++||++|+.|.+ |++|+|+||.+...
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iG 42 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIG 42 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCcc
Confidence 35689999999999999999999 99999999997764
No 174
>PRK07538 hypothetical protein; Provisional
Probab=98.51 E-value=2.1e-06 Score=78.09 Aligned_cols=33 Identities=36% Similarity=0.558 Sum_probs=30.9
Q ss_pred ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~ 65 (277)
.||+|||+|++|+++|+.|++ |++|+|+||.+.
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPE 34 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCc
Confidence 389999999999999999999 999999999864
No 175
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=98.49 E-value=2.4e-06 Score=78.30 Aligned_cols=33 Identities=42% Similarity=0.759 Sum_probs=30.3
Q ss_pred ccEEEECCChhhHHHHhhhhC-----CCcEEEEcCCCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-----NASVLLLERGGS 65 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-----g~~VlvlE~g~~ 65 (277)
|||+|||+|++|+++|+.|++ |++|+|||+.+.
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~ 38 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDN 38 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCC
Confidence 799999999999999999985 899999999643
No 176
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.49 E-value=1e-07 Score=63.68 Aligned_cols=32 Identities=31% Similarity=0.440 Sum_probs=28.8
Q ss_pred EECCChhhHHHHhhhhC-CCcEEEEcCCCCCCC
Q 045695 37 IIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG 68 (277)
Q Consensus 37 IIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~ 68 (277)
|||+|++|+++|+.|++ |.+|+|+|+.+....
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG 33 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGG 33 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSG
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCc
Confidence 89999999999999999 999999999987653
No 177
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.48 E-value=1.4e-07 Score=86.42 Aligned_cols=38 Identities=32% Similarity=0.410 Sum_probs=34.5
Q ss_pred CCCCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695 28 QPVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (277)
Q Consensus 28 ~~~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~ 65 (277)
.+.++|||+|||+|++|+++|+.|++ |++|+||||...
T Consensus 35 ~~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~ 73 (450)
T PLN00093 35 LSGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLD 73 (450)
T ss_pred cCCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 44578999999999999999999999 999999999743
No 178
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.44 E-value=1.9e-06 Score=77.26 Aligned_cols=33 Identities=45% Similarity=0.717 Sum_probs=30.6
Q ss_pred cEEEECCChhhHHHHhhh--hC-CCcEEEEcCCCCC
Q 045695 34 DYIIIGGGTAGCPLAATL--SQ-NASVLLLERGGSP 66 (277)
Q Consensus 34 DviIIGsG~aG~~aA~~L--a~-g~~VlvlE~g~~~ 66 (277)
||||||+|++|+++|++| ++ |.+|+|||+....
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~ 36 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKP 36 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccc
Confidence 899999999999999999 77 9999999998654
No 179
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.43 E-value=5.5e-06 Score=76.83 Aligned_cols=33 Identities=39% Similarity=0.624 Sum_probs=31.2
Q ss_pred CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695 32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (277)
Q Consensus 32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~ 64 (277)
+||+||||+|++|..+|++|++ |.+|+|||+..
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~ 35 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVT 35 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence 5899999999999999999999 99999999863
No 180
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.43 E-value=3.3e-06 Score=76.73 Aligned_cols=33 Identities=39% Similarity=0.538 Sum_probs=29.9
Q ss_pred cEEEECCChhhHHHHhhhhC-C-CcEEEEcCCCCC
Q 045695 34 DYIIIGGGTAGCPLAATLSQ-N-ASVLLLERGGSP 66 (277)
Q Consensus 34 DviIIGsG~aG~~aA~~La~-g-~~VlvlE~g~~~ 66 (277)
.|+|||+|++|+++|+.|++ | .+|+|+||.+..
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~ 36 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAF 36 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcC
Confidence 58999999999999999999 8 599999998543
No 181
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.37 E-value=7.3e-06 Score=75.72 Aligned_cols=31 Identities=42% Similarity=0.685 Sum_probs=29.7
Q ss_pred cEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (277)
Q Consensus 34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~ 64 (277)
|+||||+|++|+.+|..|++ |.+|+|+|++.
T Consensus 3 ~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~ 34 (466)
T PRK07845 3 RIVIIGGGPGGYEAALVAAQLGADVTVIERDG 34 (466)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEEccC
Confidence 89999999999999999999 99999999874
No 182
>PLN02487 zeta-carotene desaturase
Probab=98.35 E-value=3e-05 Score=72.98 Aligned_cols=65 Identities=14% Similarity=0.229 Sum_probs=45.4
Q ss_pred HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccccHHHH
Q 045695 203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLL 273 (277)
Q Consensus 203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~tp~lL 273 (277)
+.+.+++.|.+|++++.|.+|..+.++.+..+|+||++.+ ++..+.+. ++.||+|++.....+||
T Consensus 301 l~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~-~~~~~~~~-----aD~VV~A~p~~~~~~Ll 365 (569)
T PLN02487 301 IAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSK-ATEKEIVK-----ADAYVAACDVPGIKRLL 365 (569)
T ss_pred HHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEec-CCCceEEE-----CCEEEECCCHHHHHHhC
Confidence 4456778899999999999999985321123589999853 23323343 69999999986555544
No 183
>PTZ00058 glutathione reductase; Provisional
Probab=98.34 E-value=5e-07 Score=84.83 Aligned_cols=34 Identities=38% Similarity=0.632 Sum_probs=32.2
Q ss_pred CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695 31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (277)
Q Consensus 31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~ 64 (277)
.+||+||||+|++|..+|.+|++ |.+|+|||++.
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~~ 81 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARNKAKVALVEKDY 81 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEeccc
Confidence 58999999999999999999999 99999999963
No 184
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.33 E-value=1.1e-05 Score=73.02 Aligned_cols=34 Identities=26% Similarity=0.345 Sum_probs=31.0
Q ss_pred ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~ 66 (277)
-+|+|||+|++|+++|..|++ |.+|+|+||.+..
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~ 37 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQEL 37 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence 379999999999999999999 9999999998643
No 185
>PRK06116 glutathione reductase; Validated
Probab=98.33 E-value=4.3e-07 Score=83.48 Aligned_cols=35 Identities=37% Similarity=0.572 Sum_probs=32.3
Q ss_pred CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695 30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (277)
Q Consensus 30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~ 64 (277)
..+|||+|||+|++|+.+|..|++ |++|+|+|++.
T Consensus 2 ~~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~~ 37 (450)
T PRK06116 2 TKDYDLIVIGGGSGGIASANRAAMYGAKVALIEAKR 37 (450)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence 347999999999999999999999 99999999963
No 186
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=98.30 E-value=5.7e-06 Score=71.11 Aligned_cols=38 Identities=32% Similarity=0.448 Sum_probs=32.9
Q ss_pred CCccEEEECCChhhHHHHhhhhC-----CCcEEEEcCCCCCCC
Q 045695 31 SYYDYIIIGGGTAGCPLAATLSQ-----NASVLLLERGGSPYG 68 (277)
Q Consensus 31 ~~~DviIIGsG~aG~~aA~~La~-----g~~VlvlE~g~~~~~ 68 (277)
..+||+|||+|..|+++|+.|-+ |++|+|+||......
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytq 127 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQ 127 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccc
Confidence 46899999999999999999853 699999999976543
No 187
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=98.30 E-value=1.6e-05 Score=76.07 Aligned_cols=37 Identities=35% Similarity=0.474 Sum_probs=33.5
Q ss_pred CCCccEEEECCChhhHHHHhhhhC--CCcEEEEcCCCCC
Q 045695 30 VSYYDYIIIGGGTAGCPLAATLSQ--NASVLLLERGGSP 66 (277)
Q Consensus 30 ~~~~DviIIGsG~aG~~aA~~La~--g~~VlvlE~g~~~ 66 (277)
..++||+|||+|++|+++|+.|++ |.+|+||||.+..
T Consensus 30 ~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~ 68 (634)
T PRK08294 30 PDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGR 68 (634)
T ss_pred CCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCC
Confidence 458999999999999999999998 7999999998653
No 188
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=98.30 E-value=6.9e-06 Score=73.18 Aligned_cols=88 Identities=11% Similarity=0.106 Sum_probs=57.2
Q ss_pred HHHHHHHHHHcCCCCCCCccccCCCCeeeeeEEECCCCeeeCHHH-HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEE
Q 045695 158 QSAVRDGLVEVGVLPYNGFTYDHLYGTKIGGTIFDQNGQRHTAAD-LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAH 236 (277)
Q Consensus 158 ~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~ 236 (277)
...+.+++.++|++.. ....+.+||...+..+... ++..+++.||+|+++++|++| +++ + .
T Consensus 56 ~~d~~~fF~~~Gi~~~----------~e~~grvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~~-----~-~ 117 (376)
T TIGR03862 56 AVALQDWARGLGIETF----------VGSSGRVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QGG-----T-L 117 (376)
T ss_pred HHHHHHHHHHCCCceE----------ECCCCEECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eCC-----c-E
Confidence 3556688888888521 1223456665555555544 666788899999999999999 333 2 3
Q ss_pred EEEEEeCCCceEEEEeecCCCcEEEEecCccccHH
Q 045695 237 GVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQ 271 (277)
Q Consensus 237 gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~tp~ 271 (277)
.|.+. .+. ..+. ++.||||+|+...|+
T Consensus 118 ~v~~~--~~~-~~~~-----a~~vIlAtGG~s~p~ 144 (376)
T TIGR03862 118 RFETP--DGQ-STIE-----ADAVVLALGGASWSQ 144 (376)
T ss_pred EEEEC--CCc-eEEe-----cCEEEEcCCCccccc
Confidence 44443 222 2343 699999999977664
No 189
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.29 E-value=6.7e-07 Score=82.59 Aligned_cols=39 Identities=33% Similarity=0.374 Sum_probs=35.6
Q ss_pred CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCC
Q 045695 30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG 68 (277)
Q Consensus 30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~ 68 (277)
....+|||||||++|++||+.|.+ |.+|+|||+.++..+
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGG 52 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGG 52 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCc
Confidence 457799999999999999999999 999999999887754
No 190
>PRK06370 mercuric reductase; Validated
Probab=98.29 E-value=7.2e-07 Score=82.29 Aligned_cols=37 Identities=49% Similarity=0.715 Sum_probs=33.4
Q ss_pred CCCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695 29 PVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (277)
Q Consensus 29 ~~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~ 65 (277)
+..+|||||||+|++|+.+|+.|++ |++|+|+|++..
T Consensus 2 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~~ 39 (463)
T PRK06370 2 PAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGLL 39 (463)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCcc
Confidence 3457999999999999999999999 999999999743
No 191
>PRK09897 hypothetical protein; Provisional
Probab=98.28 E-value=8.8e-06 Score=75.90 Aligned_cols=35 Identities=23% Similarity=0.294 Sum_probs=30.3
Q ss_pred ccEEEECCChhhHHHHhhhhC-C--CcEEEEcCCCCCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-N--ASVLLLERGGSPY 67 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-g--~~VlvlE~g~~~~ 67 (277)
.+|+|||+|++|+++|.+|.+ + .+|+|+|++....
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G 39 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAG 39 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCC
Confidence 379999999999999999987 4 6999999986543
No 192
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.28 E-value=5.9e-07 Score=82.57 Aligned_cols=34 Identities=38% Similarity=0.690 Sum_probs=31.8
Q ss_pred CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695 31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (277)
Q Consensus 31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~ 64 (277)
++|||+|||+|++|+.+|..|++ |++|+|+||+.
T Consensus 1 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~ 35 (450)
T TIGR01421 1 KHYDYLVIGGGSGGIASARRAAEHGAKALLVEAKK 35 (450)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEecccc
Confidence 36999999999999999999999 99999999964
No 193
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.26 E-value=7.7e-07 Score=81.60 Aligned_cols=34 Identities=41% Similarity=0.570 Sum_probs=32.1
Q ss_pred CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695 32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (277)
Q Consensus 32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~ 65 (277)
+|||||||||++|+.+|+.|++ |++|+|+|+++.
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~ 37 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNA 37 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCC
Confidence 6999999999999999999999 999999999753
No 194
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.24 E-value=1.7e-06 Score=79.51 Aligned_cols=34 Identities=47% Similarity=0.674 Sum_probs=27.2
Q ss_pred cEEEECCChhhHHHHhhhhC-C---CcEEEEcCCCCCC
Q 045695 34 DYIIIGGGTAGCPLAATLSQ-N---ASVLLLERGGSPY 67 (277)
Q Consensus 34 DviIIGsG~aG~~aA~~La~-g---~~VlvlE~g~~~~ 67 (277)
||+|||+|++|..+|..|++ + .+|+|||+...+.
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~~~ 38 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDIPR 38 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS--
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCC
Confidence 79999999999999999999 7 8999999987653
No 195
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=98.24 E-value=9.8e-06 Score=69.02 Aligned_cols=42 Identities=31% Similarity=0.475 Sum_probs=35.4
Q ss_pred ccCCCCCCccEEEECCChhhHHHHhhhhC---CCcEEEEcCCCCC
Q 045695 25 TAAQPVSYYDYIIIGGGTAGCPLAATLSQ---NASVLLLERGGSP 66 (277)
Q Consensus 25 ~~~~~~~~~DviIIGsG~aG~~aA~~La~---g~~VlvlE~g~~~ 66 (277)
.+......||.||||+|+.|++.|++|.- +++|.|||+-...
T Consensus 41 ~~s~s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~l 85 (453)
T KOG2665|consen 41 AESISKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSL 85 (453)
T ss_pred ccccccccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhh
Confidence 34455678999999999999999999764 8999999998553
No 196
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.23 E-value=1.1e-05 Score=74.15 Aligned_cols=32 Identities=28% Similarity=0.571 Sum_probs=27.0
Q ss_pred CccEEEECCChhhHHHHhhhhCCCcEEEEcCCC
Q 045695 32 YYDYIIIGGGTAGCPLAATLSQNASVLLLERGG 64 (277)
Q Consensus 32 ~~DviIIGsG~aG~~aA~~La~g~~VlvlE~g~ 64 (277)
+||+||||+|++|..+|.+++ |.||+|+|++.
T Consensus 2 ~yD~vvIG~G~~g~~aa~~~~-g~~V~lie~~~ 33 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPRFA-DKRIAIVEKGT 33 (452)
T ss_pred CcCEEEECCCHHHHHHHHHHC-CCeEEEEeCCC
Confidence 599999999999988864432 99999999863
No 197
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.22 E-value=4.7e-06 Score=75.88 Aligned_cols=35 Identities=40% Similarity=0.563 Sum_probs=31.9
Q ss_pred CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695 31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (277)
Q Consensus 31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~ 65 (277)
..|||||||+|-||+-||...|+ |.+++||--.-.
T Consensus 3 ~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~d 38 (621)
T COG0445 3 KEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLD 38 (621)
T ss_pred CCCceEEECCCccchHHHHhhhccCCeEEEEEcCCC
Confidence 45999999999999999999999 999999987744
No 198
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=98.21 E-value=3.5e-06 Score=74.80 Aligned_cols=58 Identities=24% Similarity=0.355 Sum_probs=45.8
Q ss_pred HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccccHHHHh
Q 045695 203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLM 274 (277)
Q Consensus 203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~tp~lLl 274 (277)
+.+.+++.|..|.++..|.+|+.|.+ ++.||+..| |+. ++ ++.||--|+-+.|-.-|+
T Consensus 270 ia~~~~~~GaeI~tka~Vq~Illd~g-----ka~GV~L~d--G~e--v~-----sk~VvSNAt~~~Tf~kLl 327 (561)
T KOG4254|consen 270 IAEGAKRAGAEIFTKATVQSILLDSG-----KAVGVRLAD--GTE--VR-----SKIVVSNATPWDTFEKLL 327 (561)
T ss_pred HHHHHHhccceeeehhhhhheeccCC-----eEEEEEecC--CcE--EE-----eeeeecCCchHHHHHHhC
Confidence 55678889999999999999999996 999999984 653 33 477777777777764443
No 199
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.19 E-value=1.3e-06 Score=82.25 Aligned_cols=36 Identities=33% Similarity=0.562 Sum_probs=32.8
Q ss_pred CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695 30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (277)
Q Consensus 30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~ 65 (277)
...|||+|||||++|++||..|++ |++|+|+|++..
T Consensus 2 ~~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~~ 38 (555)
T TIGR03143 2 EEIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDDF 38 (555)
T ss_pred CCcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Confidence 346999999999999999999999 999999999753
No 200
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=1.4e-06 Score=75.62 Aligned_cols=56 Identities=20% Similarity=0.332 Sum_probs=40.8
Q ss_pred CCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccccHHHHhc
Q 045695 208 NPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLML 275 (277)
Q Consensus 208 ~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~tp~lLl~ 275 (277)
++.++.+++++.+.+|.-++ +.+|.+++..+....+. .+.|.++.|..-...++..
T Consensus 190 ~~~~i~~~~~~~i~ei~G~~-------v~~v~l~~~~~~~~~~~-----~~gvf~~iG~~p~~~~~~~ 245 (305)
T COG0492 190 KNVKIEVLTNTVVKEILGDD-------VEGVVLKNVKGEEKELP-----VDGVFIAIGHLPNTELLKG 245 (305)
T ss_pred hcCCeEEEeCCceeEEecCc-------cceEEEEecCCceEEEE-----eceEEEecCCCCchHHHhh
Confidence 34499999999999998443 55788886435555554 4899999998766666654
No 201
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=98.19 E-value=7.1e-06 Score=72.55 Aligned_cols=60 Identities=18% Similarity=0.268 Sum_probs=38.1
Q ss_pred HHh-hcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccccHH
Q 045695 203 LLE-YANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQ 271 (277)
Q Consensus 203 ~l~-~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~tp~ 271 (277)
|+. .+++..-.+..+++|++|..+.+++ .....|++.+.+|....+. ++.||||+| .+|.
T Consensus 100 Yl~Wva~~~~~~v~~~~~V~~I~~~~~~~--~~~~~V~~~~~~g~~~~~~-----ar~vVla~G--~~P~ 160 (341)
T PF13434_consen 100 YLRWVAEQLDNQVRYGSEVTSIEPDDDGD--EDLFRVTTRDSDGDGETYR-----ARNVVLATG--GQPR 160 (341)
T ss_dssp HHHHHHCCGTTTEEESEEEEEEEEEEETT--EEEEEEEEEETTS-EEEEE-----ESEEEE------EE-
T ss_pred HHHHHHHhCCCceEECCEEEEEEEecCCC--ccEEEEEEeecCCCeeEEE-----eCeEEECcC--CCCC
Confidence 554 5566665588999999999987521 1466677766567666766 689999999 4554
No 202
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.16 E-value=1.7e-06 Score=80.52 Aligned_cols=61 Identities=20% Similarity=0.173 Sum_probs=44.5
Q ss_pred HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeC-CCceEEEEeecCCCcEEEEecCccccHHHH
Q 045695 203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGSPQLL 273 (277)
Q Consensus 203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~-~g~~~~i~~~~~~a~~VVlAaG~~~tp~lL 273 (277)
+.+.+++.|.+|+++++|++|+.+++ ++.+|.+.+. ++....+. ++.||+++-...+.+||
T Consensus 238 L~~~~~~~G~~i~~~~~V~~I~~~~~-----~~~gv~~~~~~~~~~~~~~-----ad~VI~~~~~~~~~~ll 299 (492)
T TIGR02733 238 LVEALKRDGGNLLTGQRVTAIHTKGG-----RAGWVVVVDSRKQEDLNVK-----ADDVVANLPPQSLLELL 299 (492)
T ss_pred HHHHHHhcCCEEeCCceEEEEEEeCC-----eEEEEEEecCCCCceEEEE-----CCEEEECCCHHHHHHhc
Confidence 55566668999999999999999886 8888888752 12223444 68899988876555543
No 203
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=98.16 E-value=1.9e-06 Score=73.40 Aligned_cols=36 Identities=33% Similarity=0.661 Sum_probs=33.5
Q ss_pred ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG 68 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~ 68 (277)
+|+||||||.+|++.|..|++ |.+|+||||.+...+
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGG 38 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGG 38 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCC
Confidence 799999999999999999999 999999999877654
No 204
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=98.16 E-value=1.9e-06 Score=76.93 Aligned_cols=36 Identities=44% Similarity=0.731 Sum_probs=32.7
Q ss_pred ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG 68 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~ 68 (277)
+||+|||+|++|+++|+.|++ |.+|+|||+.....+
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG 38 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGG 38 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCC
Confidence 699999999999999999999 999999999765543
No 205
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=98.15 E-value=1.7e-06 Score=69.50 Aligned_cols=35 Identities=29% Similarity=0.523 Sum_probs=31.2
Q ss_pred CccEEEECCChhhHHHHhhhhC---CCcEEEEcCCCCC
Q 045695 32 YYDYIIIGGGTAGCPLAATLSQ---NASVLLLERGGSP 66 (277)
Q Consensus 32 ~~DviIIGsG~aG~~aA~~La~---g~~VlvlE~g~~~ 66 (277)
+.||||||+|-+|+++||..+. .++|.+||..-.+
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaP 113 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAP 113 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecC
Confidence 4699999999999999999985 6899999998554
No 206
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=98.15 E-value=2.2e-05 Score=67.73 Aligned_cols=41 Identities=29% Similarity=0.344 Sum_probs=35.5
Q ss_pred CCccEEEECCChhhHHHHhhhhCCCcEEEEcCCCCCCCCCc
Q 045695 31 SYYDYIIIGGGTAGCPLAATLSQNASVLLLERGGSPYGNPN 71 (277)
Q Consensus 31 ~~~DviIIGsG~aG~~aA~~La~g~~VlvlE~g~~~~~~~~ 71 (277)
...++.|||+|++|+++|+.|++-++|+|.|++....+...
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls~rhdVTLfEA~~rlGGha~ 47 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLSRRHDVTLFEADRRLGGHAN 47 (447)
T ss_pred CCcceEEEcccchhhhhHHhhhcccceEEEeccccccCccc
Confidence 35689999999999999999999999999999987765443
No 207
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.15 E-value=2e-06 Score=79.34 Aligned_cols=32 Identities=38% Similarity=0.622 Sum_probs=30.5
Q ss_pred CccEEEECCChhhHHHHhhhhC-CCcEEEEcCC
Q 045695 32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERG 63 (277)
Q Consensus 32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g 63 (277)
+|||||||||++|+.+|++|++ |.+|+|||++
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~~ 33 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEKE 33 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence 4899999999999999999999 9999999993
No 208
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.13 E-value=2.1e-06 Score=77.35 Aligned_cols=32 Identities=38% Similarity=0.593 Sum_probs=30.5
Q ss_pred cEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (277)
Q Consensus 34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~ 65 (277)
||||||+|++|+++|+.|++ |.+|+|||+.+.
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~ 33 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPP 33 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCC
Confidence 89999999999999999999 999999999864
No 209
>PLN02676 polyamine oxidase
Probab=98.13 E-value=3.3e-06 Score=78.34 Aligned_cols=57 Identities=30% Similarity=0.350 Sum_probs=41.8
Q ss_pred HHhhhhhhcccccccCcccCCCCCCccEEEECCChhhHHHHhhhhC-CC-cEEEEcCCCCCCC
Q 045695 8 SLFVYTAALNYSFMHNATAAQPVSYYDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGSPYG 68 (277)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~~~~~ 68 (277)
.+.+..++..++..+ ..+...+||||||+|++|+++|+.|++ |. +|+|+|+.....+
T Consensus 6 ~~~~~~~~~~~~~~~----~~~~~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG 64 (487)
T PLN02676 6 SLSVLLAVHLFAVAA----MDAKPSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGG 64 (487)
T ss_pred HHHHHHHHHHHHHhh----hcccCCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCC
Confidence 344444444454321 113457899999999999999999999 97 6999999887654
No 210
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=98.12 E-value=1.1e-05 Score=70.36 Aligned_cols=35 Identities=31% Similarity=0.565 Sum_probs=32.7
Q ss_pred CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695 31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (277)
Q Consensus 31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~ 65 (277)
.+||++|||+|++|-.||+.+++ |++...+|+...
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~ 73 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGT 73 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCc
Confidence 68999999999999999999999 999999999644
No 211
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.12 E-value=2.2e-06 Score=79.40 Aligned_cols=33 Identities=27% Similarity=0.440 Sum_probs=31.2
Q ss_pred CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcC
Q 045695 30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLER 62 (277)
Q Consensus 30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~ 62 (277)
..+||+||||+|++|+++|..|++ |.+|+|||+
T Consensus 2 ~~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~ 35 (475)
T PRK06327 2 SKQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEA 35 (475)
T ss_pred CcceeEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 347999999999999999999999 999999998
No 212
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.11 E-value=2.1e-06 Score=79.19 Aligned_cols=32 Identities=44% Similarity=0.702 Sum_probs=30.7
Q ss_pred ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~ 64 (277)
|||||||+|++|+++|..|++ |++|+|+|++.
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~ 33 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP 33 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc
Confidence 799999999999999999999 99999999965
No 213
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.10 E-value=2.2e-05 Score=54.16 Aligned_cols=32 Identities=38% Similarity=0.626 Sum_probs=30.3
Q ss_pred EEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695 35 YIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (277)
Q Consensus 35 viIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~ 66 (277)
++|||+|..|+-+|..|++ |.+|.|+|+.+..
T Consensus 2 vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~ 34 (80)
T PF00070_consen 2 VVVIGGGFIGIELAEALAELGKEVTLIERSDRL 34 (80)
T ss_dssp EEEESSSHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred EEEECcCHHHHHHHHHHHHhCcEEEEEeccchh
Confidence 7999999999999999999 9999999999764
No 214
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.09 E-value=2.5e-06 Score=79.36 Aligned_cols=33 Identities=30% Similarity=0.544 Sum_probs=31.0
Q ss_pred CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCC
Q 045695 31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERG 63 (277)
Q Consensus 31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g 63 (277)
..||+||||+|++|+.||..|++ |++|+|||++
T Consensus 4 ~~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~ 37 (499)
T PTZ00052 4 FMYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYV 37 (499)
T ss_pred cccCEEEECCCHHHHHHHHHHHhCCCeEEEEecc
Confidence 46999999999999999999999 9999999973
No 215
>PRK14694 putative mercuric reductase; Provisional
Probab=98.08 E-value=2.9e-06 Score=78.46 Aligned_cols=35 Identities=29% Similarity=0.415 Sum_probs=32.7
Q ss_pred CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695 30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (277)
Q Consensus 30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~ 64 (277)
..+|||||||+|++|+++|..|++ |.+|+|+|++.
T Consensus 4 ~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~ 39 (468)
T PRK14694 4 DNNLHIAVIGSGGSAMAAALKATERGARVTLIERGT 39 (468)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEccc
Confidence 458999999999999999999999 99999999974
No 216
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.08 E-value=2.6e-06 Score=78.55 Aligned_cols=33 Identities=39% Similarity=0.656 Sum_probs=31.2
Q ss_pred CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCC
Q 045695 31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERG 63 (277)
Q Consensus 31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g 63 (277)
.+||+||||+|++|+++|..|++ |.+|+|||++
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~ 35 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEKG 35 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 36999999999999999999999 9999999994
No 217
>PRK07233 hypothetical protein; Provisional
Probab=98.07 E-value=3.2e-06 Score=77.07 Aligned_cols=35 Identities=31% Similarity=0.457 Sum_probs=32.5
Q ss_pred cEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCC
Q 045695 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG 68 (277)
Q Consensus 34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~ 68 (277)
+|||||+|++|+++|+.|++ |++|+|+|+.....+
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG 36 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGG 36 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCC
Confidence 58999999999999999999 999999999987654
No 218
>PLN02268 probable polyamine oxidase
Probab=98.07 E-value=3.3e-06 Score=77.22 Aligned_cols=36 Identities=39% Similarity=0.512 Sum_probs=33.2
Q ss_pred cEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCCC
Q 045695 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYGN 69 (277)
Q Consensus 34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~~ 69 (277)
+|||||+|++|++||+.|.+ |.+|+|||+.++..+.
T Consensus 2 ~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGr 38 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGR 38 (435)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCce
Confidence 79999999999999999999 9999999999887653
No 219
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=98.06 E-value=0.00015 Score=65.92 Aligned_cols=61 Identities=23% Similarity=0.520 Sum_probs=45.4
Q ss_pred HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCcc
Q 045695 203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGAL 267 (277)
Q Consensus 203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~ 267 (277)
+...++.+||+++.+++|+.|.++.++ .+.+|+++++.. +|+...|.+ ...+.|++..|..
T Consensus 213 l~~~L~~~GV~F~~~t~V~di~~~~~~-~~~~~~~i~~~~-~g~~~~i~l--~~~DlV~vT~GS~ 273 (500)
T PF06100_consen 213 LIRYLKSQGVDFRFNTKVTDIDFDITG-DKKTATRIHIEQ-DGKEETIDL--GPDDLVFVTNGSM 273 (500)
T ss_pred HHHHHHHCCCEEECCCEEEEEEEEccC-CCeeEEEEEEEc-CCCeeEEEe--CCCCEEEEECCcc
Confidence 344678899999999999999998653 345788888885 666666654 3667788777754
No 220
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=98.06 E-value=3.5e-06 Score=77.28 Aligned_cols=35 Identities=37% Similarity=0.503 Sum_probs=31.9
Q ss_pred cEEEECCChhhHHHHhhhhC-C--CcEEEEcCCCCCCC
Q 045695 34 DYIIIGGGTAGCPLAATLSQ-N--ASVLLLERGGSPYG 68 (277)
Q Consensus 34 DviIIGsG~aG~~aA~~La~-g--~~VlvlE~g~~~~~ 68 (277)
+|+|||||++|++||+.|++ | ++|+|+|+.+...+
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GG 39 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGG 39 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcc
Confidence 69999999999999999999 8 89999999877653
No 221
>PRK13748 putative mercuric reductase; Provisional
Probab=98.06 E-value=3.4e-06 Score=79.75 Aligned_cols=34 Identities=32% Similarity=0.413 Sum_probs=32.0
Q ss_pred CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695 31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (277)
Q Consensus 31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~ 64 (277)
.+|||||||+|++|+++|..|++ |.+|+|||++.
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~~ 131 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERGT 131 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCc
Confidence 46999999999999999999999 99999999973
No 222
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=98.04 E-value=2.9e-05 Score=68.22 Aligned_cols=70 Identities=19% Similarity=0.349 Sum_probs=47.9
Q ss_pred eeEEECCCCeeeCHHH---HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEe
Q 045695 187 GGTIFDQNGQRHTAAD---LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVS 263 (277)
Q Consensus 187 ~~~~~~~~g~~~~~~~---~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlA 263 (277)
++.+.+.+|.-.+... +...+.+.|++++.+++|++|..+++ ++++|... +| .+. ++.||+|
T Consensus 124 ~g~~~~~~g~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~~-----~~~~v~~~--~g---~~~-----a~~vV~a 188 (337)
T TIGR02352 124 GAVFYPDDAHVDPRALLKALEKALEKLGVEIIEHTEVQHIEIRGE-----KVTAIVTP--SG---DVQ-----ADQVVLA 188 (337)
T ss_pred eEEEcCCCceEChHHHHHHHHHHHHHcCCEEEccceEEEEEeeCC-----EEEEEEcC--CC---EEE-----CCEEEEc
Confidence 3344445565544332 45567778999999999999998765 77777643 34 344 6999999
Q ss_pred cCccccHHH
Q 045695 264 AGALGSPQL 272 (277)
Q Consensus 264 aG~~~tp~l 272 (277)
+|+ .++.+
T Consensus 189 ~G~-~~~~l 196 (337)
T TIGR02352 189 AGA-WAGEL 196 (337)
T ss_pred CCh-hhhhc
Confidence 998 44443
No 223
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.02 E-value=4.7e-05 Score=65.80 Aligned_cols=35 Identities=37% Similarity=0.560 Sum_probs=32.6
Q ss_pred CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695 30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (277)
Q Consensus 30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~ 64 (277)
..+||++|||+|-+|+++|+++++ |.+|.|+|..-
T Consensus 18 ~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f 53 (478)
T KOG0405|consen 18 VKDFDYLVIGGGSGGVASARRAASHGAKVALCELPF 53 (478)
T ss_pred ccccceEEEcCCcchhHHhHHHHhcCceEEEEecCC
Confidence 358999999999999999999999 99999999873
No 224
>PLN02546 glutathione reductase
Probab=98.01 E-value=4.1e-06 Score=78.77 Aligned_cols=32 Identities=28% Similarity=0.369 Sum_probs=30.5
Q ss_pred CCccEEEECCChhhHHHHhhhhC-CCcEEEEcC
Q 045695 31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLER 62 (277)
Q Consensus 31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~ 62 (277)
.+|||||||+|++|..+|..|++ |++|+|+|+
T Consensus 78 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~ 110 (558)
T PLN02546 78 YDFDLFTIGAGSGGVRASRFASNFGASAAVCEL 110 (558)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 46999999999999999999999 999999996
No 225
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.00 E-value=5e-06 Score=75.41 Aligned_cols=58 Identities=16% Similarity=0.081 Sum_probs=43.8
Q ss_pred HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccccHHH
Q 045695 203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQL 272 (277)
Q Consensus 203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~tp~l 272 (277)
+....++.|+++++++.|+++..+++ +++.+... +++...+. ++.||||+|.+.+.-|
T Consensus 265 L~~~l~~~Gv~I~~g~~V~~v~~~~~-----~V~~v~~~--~g~~~~i~-----AD~VVLAtGrf~s~GL 322 (422)
T PRK05329 265 LRRAFERLGGRIMPGDEVLGAEFEGG-----RVTAVWTR--NHGDIPLR-----ARHFVLATGSFFSGGL 322 (422)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEEeCC-----EEEEEEee--CCceEEEE-----CCEEEEeCCCcccCce
Confidence 44456678999999999999998765 67766532 45555565 6999999999877654
No 226
>PLN02576 protoporphyrinogen oxidase
Probab=98.00 E-value=7.2e-06 Score=76.33 Aligned_cols=39 Identities=28% Similarity=0.381 Sum_probs=34.6
Q ss_pred CCCccEEEECCChhhHHHHhhhhC--CCcEEEEcCCCCCCC
Q 045695 30 VSYYDYIIIGGGTAGCPLAATLSQ--NASVLLLERGGSPYG 68 (277)
Q Consensus 30 ~~~~DviIIGsG~aG~~aA~~La~--g~~VlvlE~g~~~~~ 68 (277)
+..+||+|||||++|+++|+.|++ |.+|+|+|+.+...+
T Consensus 10 ~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGG 50 (496)
T PLN02576 10 ASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGG 50 (496)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCC
Confidence 456799999999999999999998 699999999877654
No 227
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.99 E-value=6e-05 Score=69.10 Aligned_cols=33 Identities=15% Similarity=0.454 Sum_probs=29.7
Q ss_pred cEEEECCChhhHHHHhhhhC---CCcEEEEcCCCCC
Q 045695 34 DYIIIGGGTAGCPLAATLSQ---NASVLLLERGGSP 66 (277)
Q Consensus 34 DviIIGsG~aG~~aA~~La~---g~~VlvlE~g~~~ 66 (277)
.|||||+|++|+.+|.+|.+ +.+|+|+|+.+..
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~ 38 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDM 38 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCc
Confidence 69999999999999999987 4799999999654
No 228
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.99 E-value=5.2e-06 Score=79.29 Aligned_cols=32 Identities=28% Similarity=0.405 Sum_probs=30.8
Q ss_pred CccEEEECCChhhHHHHhhhhC-CCcEEEEcCC
Q 045695 32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERG 63 (277)
Q Consensus 32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g 63 (277)
+|||||||+|++|..+|.++++ |.+|+|||++
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~ 148 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGD 148 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC
Confidence 7999999999999999999999 9999999975
No 229
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.97 E-value=6.1e-06 Score=74.39 Aligned_cols=34 Identities=47% Similarity=0.629 Sum_probs=30.8
Q ss_pred CCccEEEECCChhhHHHHhhhhC----CCcEEEEcCCC
Q 045695 31 SYYDYIIIGGGTAGCPLAATLSQ----NASVLLLERGG 64 (277)
Q Consensus 31 ~~~DviIIGsG~aG~~aA~~La~----g~~VlvlE~g~ 64 (277)
..+||+|||+|++|+++|+.|++ |.+|+|+||..
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~ 39 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFA 39 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCC
Confidence 36899999999999999999965 89999999963
No 230
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=97.97 E-value=0.00011 Score=66.13 Aligned_cols=65 Identities=23% Similarity=0.234 Sum_probs=41.8
Q ss_pred eEEECCCCeeeCHHH---HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEec
Q 045695 188 GTIFDQNGQRHTAAD---LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSA 264 (277)
Q Consensus 188 ~~~~~~~g~~~~~~~---~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAa 264 (277)
+.+++.+|.-.+... |...+.+ |++++++++|++|..+++ + +.++..+|.. +. ++.||+|+
T Consensus 123 al~~~~~g~idp~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~~-----~---~~v~t~~g~~--~~-----a~~vV~a~ 186 (381)
T TIGR03197 123 GLFFPQGGWLSPPQLCRALLAHAGI-RLTLHFNTEITSLERDGE-----G---WQLLDANGEV--IA-----ASVVVLAN 186 (381)
T ss_pred ceEeCCCcccChHHHHHHHHhccCC-CcEEEeCCEEEEEEEcCC-----e---EEEEeCCCCE--EE-----cCEEEEcC
Confidence 344445554433322 4456677 999999999999987655 3 3344334542 33 69999999
Q ss_pred Cccc
Q 045695 265 GALG 268 (277)
Q Consensus 265 G~~~ 268 (277)
|.+.
T Consensus 187 G~~~ 190 (381)
T TIGR03197 187 GAQA 190 (381)
T ss_pred Cccc
Confidence 9853
No 231
>PRK10262 thioredoxin reductase; Provisional
Probab=97.96 E-value=6.7e-06 Score=72.16 Aligned_cols=60 Identities=17% Similarity=0.192 Sum_probs=43.2
Q ss_pred HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCC--CceEEEEeecCCCcEEEEecCccccHHH
Q 045695 203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDAT--GAKHRAYLKNGPKNEIIVSAGALGSPQL 272 (277)
Q Consensus 203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~--g~~~~i~~~~~~a~~VVlAaG~~~tp~l 272 (277)
+....++.|+++++++.++++.-+++ ++.+|++.+.. +...++. ++.||+|+|--..+.+
T Consensus 191 ~~~~l~~~gV~i~~~~~v~~v~~~~~-----~~~~v~~~~~~~~~~~~~i~-----~D~vv~a~G~~p~~~l 252 (321)
T PRK10262 191 LMDKVENGNIILHTNRTLEEVTGDQM-----GVTGVRLRDTQNSDNIESLD-----VAGLFVAIGHSPNTAI 252 (321)
T ss_pred HHhhccCCCeEEEeCCEEEEEEcCCc-----cEEEEEEEEcCCCCeEEEEE-----CCEEEEEeCCccChhH
Confidence 44456778999999999999976554 67788887532 2334554 6999999997555554
No 232
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.93 E-value=8.2e-06 Score=66.28 Aligned_cols=32 Identities=44% Similarity=0.733 Sum_probs=29.9
Q ss_pred cEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (277)
Q Consensus 34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~ 65 (277)
||+|||+|++|+.+|.+|++ +.+|+|+|+.+.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~ 33 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPG 33 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccc
Confidence 79999999999999999999 999999988754
No 233
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.92 E-value=8.5e-06 Score=73.96 Aligned_cols=35 Identities=31% Similarity=0.317 Sum_probs=32.5
Q ss_pred cEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCC
Q 045695 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG 68 (277)
Q Consensus 34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~ 68 (277)
-|+|+|+|+||+++|++||+ |++|+|+|+++...+
T Consensus 2 rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GG 37 (485)
T COG3349 2 RVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGG 37 (485)
T ss_pred eEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCc
Confidence 48999999999999999999 999999999987654
No 234
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=97.90 E-value=5.9e-05 Score=59.07 Aligned_cols=30 Identities=23% Similarity=0.440 Sum_probs=25.7
Q ss_pred EEECCChhhHHHHhhhhC-C-----CcEEEEcCCCC
Q 045695 36 IIIGGGTAGCPLAATLSQ-N-----ASVLLLERGGS 65 (277)
Q Consensus 36 iIIGsG~aG~~aA~~La~-g-----~~VlvlE~g~~ 65 (277)
+|||+|++|++++.+|.+ . .+|.|+|+.+.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence 499999999999999876 3 58999999654
No 235
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.90 E-value=8.7e-05 Score=68.09 Aligned_cols=33 Identities=33% Similarity=0.458 Sum_probs=29.5
Q ss_pred cEEEECCChhhHHHHhhhhC-C--CcEEEEcCCCCC
Q 045695 34 DYIIIGGGTAGCPLAATLSQ-N--ASVLLLERGGSP 66 (277)
Q Consensus 34 DviIIGsG~aG~~aA~~La~-g--~~VlvlE~g~~~ 66 (277)
.|+|||+|++|+++|..|++ + .+|+|+|+.+..
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~ 37 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIV 37 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcc
Confidence 59999999999999999998 5 589999998653
No 236
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=0.00011 Score=63.66 Aligned_cols=58 Identities=22% Similarity=0.351 Sum_probs=46.4
Q ss_pred cCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeC-CCceEEEEeecCCCcEEEEecCccccHHHHh
Q 045695 207 ANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGSPQLLM 274 (277)
Q Consensus 207 ~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~-~g~~~~i~~~~~~a~~VVlAaG~~~tp~lLl 274 (277)
+.-+|++|+++.+-++|.=|++ +|+|.+|+++ +|..+.+.+ ..|.+--|-+-++.||.
T Consensus 400 ~sl~Nv~ii~na~Ttei~Gdg~-----kV~Gl~Y~dr~sge~~~l~L-----eGvFVqIGL~PNT~WLk 458 (520)
T COG3634 400 RSLPNVTIITNAQTTEVKGDGD-----KVTGLEYRDRVSGEEHHLEL-----EGVFVQIGLLPNTEWLK 458 (520)
T ss_pred hcCCCcEEEecceeeEEecCCc-----eecceEEEeccCCceeEEEe-----eeeEEEEecccChhHhh
Confidence 4457999999999999997776 9999999985 467777753 67777777777777774
No 237
>PLN02568 polyamine oxidase
Probab=97.88 E-value=1.4e-05 Score=74.88 Aligned_cols=38 Identities=29% Similarity=0.359 Sum_probs=34.0
Q ss_pred CCccEEEECCChhhHHHHhhhhC-C-----CcEEEEcCCCCCCC
Q 045695 31 SYYDYIIIGGGTAGCPLAATLSQ-N-----ASVLLLERGGSPYG 68 (277)
Q Consensus 31 ~~~DviIIGsG~aG~~aA~~La~-g-----~~VlvlE~g~~~~~ 68 (277)
...||||||+|++|+++|+.|++ | .+|+|+|+.....+
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GG 47 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGG 47 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCC
Confidence 35799999999999999999998 7 89999999887654
No 238
>PRK14727 putative mercuric reductase; Provisional
Probab=97.88 E-value=1.4e-05 Score=74.13 Aligned_cols=36 Identities=25% Similarity=0.308 Sum_probs=33.0
Q ss_pred CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695 30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (277)
Q Consensus 30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~ 65 (277)
...||+||||+|++|+.+|++|++ |.+|+|+|++..
T Consensus 14 ~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~ 50 (479)
T PRK14727 14 KLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADV 50 (479)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCc
Confidence 357999999999999999999999 999999999743
No 239
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=97.86 E-value=1.4e-05 Score=71.34 Aligned_cols=39 Identities=33% Similarity=0.372 Sum_probs=35.1
Q ss_pred CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCC
Q 045695 30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG 68 (277)
Q Consensus 30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~ 68 (277)
....||||||+|.+||++|++|.+ |++|+|||..+....
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GG 44 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGG 44 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCc
Confidence 457899999999999999999999 999999999877653
No 240
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.86 E-value=1.4e-05 Score=72.03 Aligned_cols=34 Identities=29% Similarity=0.284 Sum_probs=31.6
Q ss_pred ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~ 66 (277)
.||+|||||++|+.+|+.|++ |++|+|+|+.+..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK 37 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 499999999999999999999 9999999987654
No 241
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=97.84 E-value=1.6e-05 Score=73.25 Aligned_cols=36 Identities=31% Similarity=0.401 Sum_probs=32.1
Q ss_pred ccEEEECCChhhHHHHhhhhC-----CCcEEEEcCCCCCCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-----NASVLLLERGGSPYG 68 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-----g~~VlvlE~g~~~~~ 68 (277)
.||+|||+|++|+++|+.|++ |.+|+|+|+.+...+
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG 43 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGG 43 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcc
Confidence 589999999999999999987 589999999877643
No 242
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.83 E-value=1.8e-05 Score=78.51 Aligned_cols=37 Identities=27% Similarity=0.368 Sum_probs=33.6
Q ss_pred CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCC
Q 045695 31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY 67 (277)
Q Consensus 31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~ 67 (277)
..++|+|||||+||++||+.|++ |++|+|+|+.+...
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lG 573 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPG 573 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccC
Confidence 46899999999999999999999 99999999986543
No 243
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=97.83 E-value=2e-05 Score=75.04 Aligned_cols=35 Identities=23% Similarity=0.355 Sum_probs=32.7
Q ss_pred CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695 30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (277)
Q Consensus 30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~ 64 (277)
....+|+|||||++|+++|..|++ |++|+|+||..
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 457899999999999999999999 99999999975
No 244
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.83 E-value=1.4e-05 Score=74.15 Aligned_cols=33 Identities=18% Similarity=0.415 Sum_probs=30.6
Q ss_pred CCccEEEECCChhhHHHHhhhhC--CCcEEEEcCC
Q 045695 31 SYYDYIIIGGGTAGCPLAATLSQ--NASVLLLERG 63 (277)
Q Consensus 31 ~~~DviIIGsG~aG~~aA~~La~--g~~VlvlE~g 63 (277)
.+||+||||+|++|..+|.++++ |.+|+|||++
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~ 36 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQ 36 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence 46999999999999999999998 6999999984
No 245
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.82 E-value=1.9e-05 Score=70.77 Aligned_cols=33 Identities=36% Similarity=0.614 Sum_probs=30.3
Q ss_pred cEEEECCChhhHHHHhhhhC---CCcEEEEcCCCCC
Q 045695 34 DYIIIGGGTAGCPLAATLSQ---NASVLLLERGGSP 66 (277)
Q Consensus 34 DviIIGsG~aG~~aA~~La~---g~~VlvlE~g~~~ 66 (277)
||||||+|++|+++|++|++ |++|+|||+++..
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~ 36 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTI 36 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCC
Confidence 89999999999999999986 8999999998643
No 246
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=97.82 E-value=1.6e-05 Score=73.30 Aligned_cols=35 Identities=26% Similarity=0.457 Sum_probs=31.3
Q ss_pred cEEEECCChhhHHHHhhhhC-C------CcEEEEcCCCCCCC
Q 045695 34 DYIIIGGGTAGCPLAATLSQ-N------ASVLLLERGGSPYG 68 (277)
Q Consensus 34 DviIIGsG~aG~~aA~~La~-g------~~VlvlE~g~~~~~ 68 (277)
+|+|||+|++|++||+.|++ | .+|+|||+.+...+
T Consensus 3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GG 44 (463)
T PRK12416 3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGG 44 (463)
T ss_pred eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccc
Confidence 69999999999999999997 4 68999999877654
No 247
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=97.80 E-value=2e-05 Score=72.59 Aligned_cols=35 Identities=29% Similarity=0.337 Sum_probs=32.0
Q ss_pred cEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCC
Q 045695 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG 68 (277)
Q Consensus 34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~ 68 (277)
+|+|||+|++|+++|+.|++ |++|+|+|+.+...+
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG 36 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGG 36 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Confidence 48999999999999999999 999999999876554
No 248
>PRK12831 putative oxidoreductase; Provisional
Probab=97.78 E-value=2.7e-05 Score=71.89 Aligned_cols=37 Identities=27% Similarity=0.343 Sum_probs=33.5
Q ss_pred CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695 30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (277)
Q Consensus 30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~ 66 (277)
....||+|||+|++|+++|+.|++ |++|+|+|+....
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~ 175 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEP 175 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 356899999999999999999999 9999999997654
No 249
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=97.77 E-value=0.00024 Score=65.49 Aligned_cols=33 Identities=27% Similarity=0.474 Sum_probs=30.6
Q ss_pred ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~ 65 (277)
-+++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~ 204 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDR 204 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCC
Confidence 479999999999999999999 999999999854
No 250
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.76 E-value=2.4e-05 Score=67.12 Aligned_cols=54 Identities=13% Similarity=0.050 Sum_probs=44.0
Q ss_pred hcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccccHH
Q 045695 206 YANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQ 271 (277)
Q Consensus 206 ~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~tp~ 271 (277)
..++.|.-++++-+|.+..+..+ +|+.|.+++ .....++ ++..|||+|+|.+--
T Consensus 267 ~f~~~Gg~~m~Gd~V~~a~~~~~-----~v~~i~trn--~~diP~~-----a~~~VLAsGsffskG 320 (421)
T COG3075 267 QFEQLGGLWMPGDEVKKATCKGG-----RVTEIYTRN--HADIPLR-----ADFYVLASGSFFSKG 320 (421)
T ss_pred HHHHcCceEecCCceeeeeeeCC-----eEEEEEecc--cccCCCC-----hhHeeeecccccccc
Confidence 55668999999999999999998 999999984 3334454 799999999987753
No 251
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.74 E-value=0.00044 Score=62.09 Aligned_cols=33 Identities=30% Similarity=0.563 Sum_probs=30.5
Q ss_pred ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~ 65 (277)
-.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus 142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~ 175 (377)
T PRK04965 142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAAS 175 (377)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCc
Confidence 479999999999999999999 999999999854
No 252
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=97.72 E-value=2.5e-05 Score=70.19 Aligned_cols=50 Identities=26% Similarity=0.308 Sum_probs=38.6
Q ss_pred ccccCcccCCCCCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCC
Q 045695 19 SFMHNATAAQPVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG 68 (277)
Q Consensus 19 ~~~~~~~~~~~~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~ 68 (277)
+.++..++......-+++|||+|++|+.||+.||+ |.+|.||||.+...+
T Consensus 111 r~le~le~~~~~v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGG 161 (622)
T COG1148 111 RKLEPLEEIKVEVSKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGG 161 (622)
T ss_pred hhcCChhhHHHhhccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccc
Confidence 33333333333445689999999999999999999 999999999876653
No 253
>PRK07846 mycothione reductase; Reviewed
Probab=97.70 E-value=4e-05 Score=70.49 Aligned_cols=33 Identities=30% Similarity=0.586 Sum_probs=28.2
Q ss_pred CccEEEECCChhhHHHHhhhhCCCcEEEEcCCCC
Q 045695 32 YYDYIIIGGGTAGCPLAATLSQNASVLLLERGGS 65 (277)
Q Consensus 32 ~~DviIIGsG~aG~~aA~~La~g~~VlvlE~g~~ 65 (277)
+||+||||+|++|..+|.+++ |.||+|+|++..
T Consensus 1 ~yD~vVIG~G~~g~~aa~~~~-G~~V~lie~~~~ 33 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDERFA-DKRIAIVEKGTF 33 (451)
T ss_pred CCCEEEECCCHHHHHHHHHHC-CCeEEEEeCCCC
Confidence 489999999999998887632 999999998643
No 254
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.68 E-value=3.5e-05 Score=69.72 Aligned_cols=33 Identities=36% Similarity=0.449 Sum_probs=30.7
Q ss_pred ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~ 65 (277)
.||+|||+|.+|+.+|+.|++ |.+|+|+|+.+.
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~ 34 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPE 34 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence 489999999999999999999 999999998765
No 255
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.66 E-value=9.1e-05 Score=68.14 Aligned_cols=37 Identities=30% Similarity=0.403 Sum_probs=33.4
Q ss_pred CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695 30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (277)
Q Consensus 30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~ 66 (277)
...+||+|||+|++|+++|+.|++ |++|+|+|+....
T Consensus 131 ~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~ 168 (449)
T TIGR01316 131 STHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKP 168 (449)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 346899999999999999999999 9999999997654
No 256
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.65 E-value=4e-05 Score=69.03 Aligned_cols=61 Identities=15% Similarity=0.126 Sum_probs=46.6
Q ss_pred HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccccHHHHhc
Q 045695 203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLML 275 (277)
Q Consensus 203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~tp~lLl~ 275 (277)
+...+++.|++++.+++|.++..+++ ++++|.+.+ ++...+. ++.||||+|++.+..|+..
T Consensus 269 L~~~~~~~Gg~il~g~~V~~i~~~~~-----~v~~V~t~~--g~~~~l~-----AD~vVLAaGaw~S~gL~a~ 329 (419)
T TIGR03378 269 LKHRFEQLGGVMLPGDRVLRAEFEGN-----RVTRIHTRN--HRDIPLR-----ADHFVLASGSFFSNGLVAE 329 (419)
T ss_pred HHHHHHHCCCEEEECcEEEEEEeeCC-----eEEEEEecC--CccceEE-----CCEEEEccCCCcCHHHHhh
Confidence 44466778999999999999999887 888877643 3223444 6899999999877777654
No 257
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=97.65 E-value=4.4e-05 Score=69.31 Aligned_cols=35 Identities=37% Similarity=0.489 Sum_probs=31.7
Q ss_pred cEEEECCChhhHHHHhhhhC-C--CcEEEEcCCCCCCC
Q 045695 34 DYIIIGGGTAGCPLAATLSQ-N--ASVLLLERGGSPYG 68 (277)
Q Consensus 34 DviIIGsG~aG~~aA~~La~-g--~~VlvlE~g~~~~~ 68 (277)
.++|||+|++|++||++|.+ + .+|+|+|++++..+
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG 39 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGG 39 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCc
Confidence 48999999999999999999 8 89999999977654
No 258
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=97.65 E-value=4.4e-05 Score=67.41 Aligned_cols=36 Identities=31% Similarity=0.494 Sum_probs=32.3
Q ss_pred CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCC
Q 045695 32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY 67 (277)
Q Consensus 32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~ 67 (277)
+-+|||||||++|+++|..|.+ |.+|+|+|+...+.
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R 38 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDPR 38 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccc
Confidence 3489999999999999999999 99999999965543
No 259
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=97.64 E-value=5.2e-05 Score=75.47 Aligned_cols=39 Identities=21% Similarity=0.141 Sum_probs=34.4
Q ss_pred CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCC
Q 045695 30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG 68 (277)
Q Consensus 30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~ 68 (277)
....+|+|||||+||+++|+.|++ |++|+|+|+.....+
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG 343 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGG 343 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCc
Confidence 346799999999999999999999 999999999865543
No 260
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.63 E-value=0.00063 Score=62.93 Aligned_cols=33 Identities=24% Similarity=0.338 Sum_probs=30.1
Q ss_pred ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~ 65 (277)
-.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus 173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~ 206 (466)
T PRK07818 173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDR 206 (466)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 379999999999999999999 999999998754
No 261
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.62 E-value=6.2e-05 Score=73.12 Aligned_cols=38 Identities=29% Similarity=0.417 Sum_probs=34.6
Q ss_pred CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCC
Q 045695 31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG 68 (277)
Q Consensus 31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~ 68 (277)
...+|+|||+|++|+++|+.|++ |++|+|+|+.....+
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GG 275 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGG 275 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCC
Confidence 46899999999999999999999 999999999877654
No 262
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.61 E-value=6.8e-05 Score=69.42 Aligned_cols=37 Identities=24% Similarity=0.334 Sum_probs=33.5
Q ss_pred CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCC
Q 045695 31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY 67 (277)
Q Consensus 31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~ 67 (277)
..++|+|||+|++|+++|..|++ |++|+|+|+.+...
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~G 179 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIG 179 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCC
Confidence 46799999999999999999999 99999999986543
No 263
>PLN02529 lysine-specific histone demethylase 1
Probab=97.60 E-value=6.4e-05 Score=72.54 Aligned_cols=38 Identities=34% Similarity=0.434 Sum_probs=34.2
Q ss_pred CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCC
Q 045695 31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG 68 (277)
Q Consensus 31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~ 68 (277)
...||+|||+|++|+++|..|++ |++|+|+|+.....+
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG 197 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGG 197 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcC
Confidence 46899999999999999999999 999999999876543
No 264
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.60 E-value=5.2e-05 Score=69.92 Aligned_cols=32 Identities=34% Similarity=0.565 Sum_probs=30.2
Q ss_pred cEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (277)
Q Consensus 34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~ 65 (277)
++||||+|++|+++|..|++ |.+|+||||+..
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~~ 34 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEADL 34 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCcc
Confidence 79999999999999999999 999999999754
No 265
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.58 E-value=0.00087 Score=60.64 Aligned_cols=33 Identities=33% Similarity=0.532 Sum_probs=30.5
Q ss_pred ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~ 65 (277)
-.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ 178 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAAT 178 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCc
Confidence 369999999999999999999 999999999865
No 266
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=97.58 E-value=6e-05 Score=69.77 Aligned_cols=65 Identities=18% Similarity=0.379 Sum_probs=44.1
Q ss_pred HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccccHHHH
Q 045695 203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLL 273 (277)
Q Consensus 203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~tp~lL 273 (277)
+.+..++.|.+|+.++.|++|..+.++.+..++++|++.+.++ ...+. ++.||+|+....+.+||
T Consensus 225 l~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~-~~~~~-----aD~VVlA~p~~~~~~Ll 289 (474)
T TIGR02732 225 ILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEG-KKVIK-----ADAYVAACDVPGIKRLL 289 (474)
T ss_pred HHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCc-ceEEE-----CCEEEECCChHHHHhhC
Confidence 4455566899999999999999865200001388888864222 12343 68999999987777665
No 267
>PLN02612 phytoene desaturase
Probab=97.55 E-value=8.6e-05 Score=70.24 Aligned_cols=37 Identities=27% Similarity=0.284 Sum_probs=33.2
Q ss_pred CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCC
Q 045695 31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY 67 (277)
Q Consensus 31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~ 67 (277)
...+|+|||+|++|+++|+.|++ |++|+|+|+.....
T Consensus 92 ~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~g 129 (567)
T PLN02612 92 KPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLG 129 (567)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCC
Confidence 35799999999999999999999 99999999976543
No 268
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.54 E-value=0.00044 Score=61.69 Aligned_cols=32 Identities=19% Similarity=0.390 Sum_probs=28.0
Q ss_pred cEEEECCChhhHHHHhhhh---C-CCcEEEEcCCCC
Q 045695 34 DYIIIGGGTAGCPLAATLS---Q-NASVLLLERGGS 65 (277)
Q Consensus 34 DviIIGsG~aG~~aA~~La---~-g~~VlvlE~g~~ 65 (277)
.|||||+|++|+.+|.+|. . +.+|+|+|+...
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~ 36 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSST 36 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCC
Confidence 4899999999999999996 3 589999998855
No 269
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.54 E-value=8.6e-05 Score=71.53 Aligned_cols=37 Identities=30% Similarity=0.320 Sum_probs=33.4
Q ss_pred CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCC
Q 045695 31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY 67 (277)
Q Consensus 31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~ 67 (277)
...+|+|||+|++|+++|+.|++ |++|+|+|+.....
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~G 363 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIG 363 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 46799999999999999999999 99999999986543
No 270
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.54 E-value=8.4e-05 Score=74.59 Aligned_cols=37 Identities=27% Similarity=0.205 Sum_probs=33.5
Q ss_pred CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCC
Q 045695 31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY 67 (277)
Q Consensus 31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~ 67 (277)
...+|+|||||++|+++|..|++ |++|+|+|+.....
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~G 466 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVG 466 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCc
Confidence 35799999999999999999999 99999999986553
No 271
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.53 E-value=9.5e-05 Score=72.37 Aligned_cols=37 Identities=24% Similarity=0.284 Sum_probs=33.1
Q ss_pred CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695 30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (277)
Q Consensus 30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~ 66 (277)
....+|+|||||++|+++|+.|++ |++|+|+|+....
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~ 466 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEI 466 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 356799999999999999999999 9999999996543
No 272
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.52 E-value=0.00011 Score=67.74 Aligned_cols=37 Identities=24% Similarity=0.323 Sum_probs=33.4
Q ss_pred CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695 30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (277)
Q Consensus 30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~ 66 (277)
....+|+|||+|++|+.+|..|++ |++|+|+|+....
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~ 175 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKA 175 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCC
Confidence 346799999999999999999999 9999999998654
No 273
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.52 E-value=0.0012 Score=61.21 Aligned_cols=33 Identities=27% Similarity=0.508 Sum_probs=30.7
Q ss_pred ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~ 65 (277)
-.++|||+|.+|+-+|..|++ |.+|.|+|+++.
T Consensus 181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~ 214 (472)
T PRK05976 181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAADR 214 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCc
Confidence 489999999999999999999 999999999854
No 274
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=97.52 E-value=9.5e-05 Score=73.28 Aligned_cols=38 Identities=29% Similarity=0.313 Sum_probs=33.9
Q ss_pred CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCC
Q 045695 30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY 67 (277)
Q Consensus 30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~ 67 (277)
....+|+|||||++|+++|+.|++ |++|+|+|+.+...
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~G 575 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAG 575 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccC
Confidence 345699999999999999999999 99999999987654
No 275
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=97.49 E-value=0.00018 Score=60.68 Aligned_cols=37 Identities=24% Similarity=0.359 Sum_probs=32.4
Q ss_pred CccEEEECCChhhHHHHhhhhC-C------CcEEEEcCCCCCCC
Q 045695 32 YYDYIIIGGGTAGCPLAATLSQ-N------ASVLLLERGGSPYG 68 (277)
Q Consensus 32 ~~DviIIGsG~aG~~aA~~La~-g------~~VlvlE~g~~~~~ 68 (277)
...++|||+|+.|+.+||.|++ + +.|.++|.......
T Consensus 10 sk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~g 53 (380)
T KOG2852|consen 10 SKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGG 53 (380)
T ss_pred ceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccc
Confidence 4689999999999999999999 6 78999999876543
No 276
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.49 E-value=0.0016 Score=60.97 Aligned_cols=54 Identities=15% Similarity=0.319 Sum_probs=41.4
Q ss_pred CCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeC-CCceEEEEeecCCCcEEEEecCccccHHHH
Q 045695 210 SGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGSPQLL 273 (277)
Q Consensus 210 ~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~-~g~~~~i~~~~~~a~~VVlAaG~~~tp~lL 273 (277)
.|++|++++.++++.-+++ ++++|++.+. +++...+. ++.||+|.|..-.+.+|
T Consensus 401 ~gV~i~~~~~v~~i~~~~~-----~v~~v~~~~~~~~~~~~i~-----~D~vi~a~G~~Pn~~~l 455 (515)
T TIGR03140 401 PNVDILTSAQTTEIVGDGD-----KVTGIRYQDRNSGEEKQLD-----LDGVFVQIGLVPNTEWL 455 (515)
T ss_pred CCCEEEECCeeEEEEcCCC-----EEEEEEEEECCCCcEEEEE-----cCEEEEEeCCcCCchHH
Confidence 5899999999999976554 8888988763 34445554 69999999987666655
No 277
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.47 E-value=0.0013 Score=60.67 Aligned_cols=33 Identities=30% Similarity=0.632 Sum_probs=30.3
Q ss_pred ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~ 65 (277)
-.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus 171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ 204 (458)
T PRK06912 171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQ 204 (458)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 379999999999999999999 999999999854
No 278
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.45 E-value=0.0022 Score=60.18 Aligned_cols=55 Identities=20% Similarity=0.342 Sum_probs=43.1
Q ss_pred CCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeC-CCceEEEEeecCCCcEEEEecCccccHHHHh
Q 045695 210 SGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGSPQLLM 274 (277)
Q Consensus 210 ~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~-~g~~~~i~~~~~~a~~VVlAaG~~~tp~lLl 274 (277)
.|+++++++.++++..+++ ++++|++.+. +++..++. .+.|++|.|....+.+|.
T Consensus 400 ~gI~i~~~~~v~~i~~~~g-----~v~~v~~~~~~~g~~~~i~-----~D~v~~~~G~~p~~~~l~ 455 (517)
T PRK15317 400 PNVTIITNAQTTEVTGDGD-----KVTGLTYKDRTTGEEHHLE-----LEGVFVQIGLVPNTEWLK 455 (517)
T ss_pred CCcEEEECcEEEEEEcCCC-----cEEEEEEEECCCCcEEEEE-----cCEEEEeECCccCchHHh
Confidence 5999999999999986654 8899998863 45555665 599999999877666653
No 279
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.0001 Score=63.56 Aligned_cols=37 Identities=32% Similarity=0.450 Sum_probs=33.1
Q ss_pred CCCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695 29 PVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (277)
Q Consensus 29 ~~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~ 65 (277)
..-+||.||||+|-+|+++|.++++ |.+|.+||--..
T Consensus 16 ~sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~P 53 (503)
T KOG4716|consen 16 SSYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKP 53 (503)
T ss_pred ccCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeeccc
Confidence 3458999999999999999999999 999999987643
No 280
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.44 E-value=0.0013 Score=60.73 Aligned_cols=33 Identities=27% Similarity=0.463 Sum_probs=30.3
Q ss_pred ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~ 65 (277)
-.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~ 206 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALPR 206 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCC
Confidence 379999999999999999999 999999999855
No 281
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.41 E-value=0.00019 Score=66.32 Aligned_cols=38 Identities=32% Similarity=0.486 Sum_probs=33.3
Q ss_pred CCccEEEECCChhhHHHHhhhhC---CCcEEEEcCCCCCCC
Q 045695 31 SYYDYIIIGGGTAGCPLAATLSQ---NASVLLLERGGSPYG 68 (277)
Q Consensus 31 ~~~DviIIGsG~aG~~aA~~La~---g~~VlvlE~g~~~~~ 68 (277)
....|+|||||++|+.+|..|++ |++|.|+|+.+.+.+
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgG 65 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFG 65 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcc
Confidence 45689999999999999999974 899999999987653
No 282
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.41 E-value=0.0019 Score=59.88 Aligned_cols=33 Identities=27% Similarity=0.389 Sum_probs=30.4
Q ss_pred ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~ 65 (277)
-.++|||+|..|+-+|..|++ |.+|+|+|+++.
T Consensus 184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~ 217 (475)
T PRK06327 184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEALPA 217 (475)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCc
Confidence 389999999999999999999 999999999854
No 283
>PRK12831 putative oxidoreductase; Provisional
Probab=97.41 E-value=0.0011 Score=61.36 Aligned_cols=32 Identities=25% Similarity=0.353 Sum_probs=29.4
Q ss_pred ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~ 64 (277)
-.|+|||+|..|+-+|..|.+ |.+|.|+++..
T Consensus 282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence 489999999999999999999 99999998864
No 284
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.41 E-value=0.0014 Score=60.61 Aligned_cols=33 Identities=30% Similarity=0.591 Sum_probs=30.7
Q ss_pred ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~ 65 (277)
-.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~ 200 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDR 200 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCc
Confidence 479999999999999999999 999999999854
No 285
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=97.39 E-value=0.0016 Score=59.72 Aligned_cols=34 Identities=29% Similarity=0.571 Sum_probs=31.6
Q ss_pred ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~ 66 (277)
-.++|||+|+.|+=.|..+++ |.+|+|||+++..
T Consensus 174 ~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~i 208 (454)
T COG1249 174 KSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRI 208 (454)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence 369999999999999999999 9999999999764
No 286
>PRK06370 mercuric reductase; Validated
Probab=97.38 E-value=0.0019 Score=59.68 Aligned_cols=33 Identities=33% Similarity=0.595 Sum_probs=30.6
Q ss_pred ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~ 65 (277)
-.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~ 205 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPR 205 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCC
Confidence 479999999999999999999 999999999855
No 287
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.36 E-value=0.0004 Score=64.21 Aligned_cols=37 Identities=24% Similarity=0.328 Sum_probs=33.5
Q ss_pred CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCC
Q 045695 31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY 67 (277)
Q Consensus 31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~ 67 (277)
...+|+|||+|++|+++|..|++ |++|+|+|+.+...
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~g 177 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIG 177 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCC
Confidence 56799999999999999999999 99999999987543
No 288
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.36 E-value=0.00027 Score=64.81 Aligned_cols=39 Identities=26% Similarity=0.387 Sum_probs=33.4
Q ss_pred CCCccEEEECCChhhHHHHhhhh-C-CCcEEEEcCCCCCCC
Q 045695 30 VSYYDYIIIGGGTAGCPLAATLS-Q-NASVLLLERGGSPYG 68 (277)
Q Consensus 30 ~~~~DviIIGsG~aG~~aA~~La-~-g~~VlvlE~g~~~~~ 68 (277)
....-|+|||||++|+.+|..|+ + |++|.|+||.+.+.+
T Consensus 37 ~~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgG 77 (506)
T PTZ00188 37 AKPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYG 77 (506)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCcc
Confidence 34567999999999999999865 6 999999999988764
No 289
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.35 E-value=0.00024 Score=68.39 Aligned_cols=37 Identities=27% Similarity=0.270 Sum_probs=33.4
Q ss_pred CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCC
Q 045695 31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY 67 (277)
Q Consensus 31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~ 67 (277)
...+|+|||+|++|+++|+.|++ |++|+|+|+.....
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~G 229 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAG 229 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence 45799999999999999999999 99999999987643
No 290
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.35 E-value=0.0015 Score=60.07 Aligned_cols=32 Identities=31% Similarity=0.371 Sum_probs=29.7
Q ss_pred ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~ 64 (277)
-.|+|||+|..|+-+|..|++ |.+|.|+++..
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~ 305 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT 305 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence 379999999999999999999 99999999874
No 291
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.34 E-value=0.0002 Score=70.53 Aligned_cols=35 Identities=23% Similarity=0.337 Sum_probs=31.9
Q ss_pred CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695 30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (277)
Q Consensus 30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~ 64 (277)
.....|+|||+|++|+++|+.|++ |++|+|+|+..
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~ 416 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLK 416 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccc
Confidence 356789999999999999999999 99999999864
No 292
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.32 E-value=0.00031 Score=62.55 Aligned_cols=37 Identities=27% Similarity=0.281 Sum_probs=33.5
Q ss_pred CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCC
Q 045695 31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY 67 (277)
Q Consensus 31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~ 67 (277)
...+|+|||+|++|+.+|..|++ |.+|+|+|+.+...
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~g 54 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPG 54 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCC
Confidence 45699999999999999999999 99999999987654
No 293
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=97.32 E-value=0.002 Score=59.41 Aligned_cols=33 Identities=27% Similarity=0.520 Sum_probs=30.4
Q ss_pred ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~ 65 (277)
-.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus 176 ~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~ 209 (461)
T PRK05249 176 RSLIIYGAGVIGCEYASIFAALGVKVTLINTRDR 209 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 479999999999999999999 999999999854
No 294
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.31 E-value=0.0021 Score=58.96 Aligned_cols=33 Identities=27% Similarity=0.452 Sum_probs=30.5
Q ss_pred ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~ 65 (277)
-.++|||+|.+|+-+|..|++ |.+|.|+|+++.
T Consensus 158 ~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~ 191 (438)
T PRK07251 158 ERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAAST 191 (438)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCc
Confidence 379999999999999999999 999999999855
No 295
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.30 E-value=0.0021 Score=63.54 Aligned_cols=32 Identities=22% Similarity=0.329 Sum_probs=29.8
Q ss_pred cEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (277)
Q Consensus 34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~ 65 (277)
.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus 147 ~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ 179 (847)
T PRK14989 147 RGAVVGGGLLGLEAAGALKNLGVETHVIEFAPM 179 (847)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEecccc
Confidence 68999999999999999999 999999999854
No 296
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.28 E-value=0.003 Score=58.54 Aligned_cols=33 Identities=18% Similarity=0.364 Sum_probs=30.6
Q ss_pred ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~ 65 (277)
-.++|||+|..|+-+|..|++ |.+|.|||+++.
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~ 208 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQ 208 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCC
Confidence 379999999999999999999 999999999865
No 297
>PRK10262 thioredoxin reductase; Provisional
Probab=97.28 E-value=0.0063 Score=53.31 Aligned_cols=33 Identities=30% Similarity=0.427 Sum_probs=30.2
Q ss_pred ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~ 65 (277)
-.++|||+|..|+-+|..|++ +.+|.++++.+.
T Consensus 147 ~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~ 180 (321)
T PRK10262 147 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDG 180 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCc
Confidence 379999999999999999999 999999999753
No 298
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=97.27 E-value=0.0049 Score=53.06 Aligned_cols=32 Identities=25% Similarity=0.415 Sum_probs=29.5
Q ss_pred ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~ 64 (277)
-.++|||+|..|+-+|..|++ +.+|.++++++
T Consensus 142 ~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~ 174 (300)
T TIGR01292 142 KEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRD 174 (300)
T ss_pred CEEEEECCChHHHHHHHHHHhhcCEEEEEEeCc
Confidence 489999999999999999999 99999999874
No 299
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.26 E-value=0.0032 Score=57.81 Aligned_cols=33 Identities=18% Similarity=0.322 Sum_probs=30.1
Q ss_pred ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~ 65 (277)
-.++|||+|..|+-+|..|.+ |.+|.++++++.
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~ 183 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDR 183 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcc
Confidence 479999999999999999999 999999998754
No 300
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.24 E-value=0.0028 Score=58.42 Aligned_cols=34 Identities=24% Similarity=0.303 Sum_probs=31.1
Q ss_pred ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~ 66 (277)
-.++|||+|..|+=+|..|++ |.+|.|||+++..
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~i 201 (450)
T TIGR01421 167 KRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERV 201 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence 379999999999999999999 9999999998653
No 301
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.24 E-value=0.0012 Score=65.01 Aligned_cols=32 Identities=16% Similarity=0.361 Sum_probs=27.7
Q ss_pred EEEECCChhhHHHHhhhhC----CCcEEEEcCCCCC
Q 045695 35 YIIIGGGTAGCPLAATLSQ----NASVLLLERGGSP 66 (277)
Q Consensus 35 viIIGsG~aG~~aA~~La~----g~~VlvlE~g~~~ 66 (277)
|||||+|++|+.+|.+|.+ +.+|+|+|+.+..
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~ 36 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHP 36 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCC
Confidence 6899999999999998765 4699999998764
No 302
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=97.24 E-value=0.00029 Score=63.42 Aligned_cols=38 Identities=34% Similarity=0.421 Sum_probs=32.9
Q ss_pred CCccEEEECCChhhHHHHhhhhC--CCcEEEEcCCCCCCC
Q 045695 31 SYYDYIIIGGGTAGCPLAATLSQ--NASVLLLERGGSPYG 68 (277)
Q Consensus 31 ~~~DviIIGsG~aG~~aA~~La~--g~~VlvlE~g~~~~~ 68 (277)
...-++|||+|++|++||.+|-+ +.+|+|+|..++..+
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGG 59 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGG 59 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCc
Confidence 34589999999999999999997 579999999987653
No 303
>PRK06116 glutathione reductase; Validated
Probab=97.23 E-value=0.0026 Score=58.50 Aligned_cols=33 Identities=21% Similarity=0.386 Sum_probs=30.3
Q ss_pred ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~ 65 (277)
-.++|||+|..|+-+|..|++ |.+|.++++++.
T Consensus 168 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~ 201 (450)
T PRK06116 168 KRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDA 201 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 479999999999999999999 999999998854
No 304
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.22 E-value=0.00037 Score=66.99 Aligned_cols=37 Identities=24% Similarity=0.264 Sum_probs=33.7
Q ss_pred CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCC
Q 045695 31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY 67 (277)
Q Consensus 31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~ 67 (277)
...+|+|||+|++|+++|+.|++ |++|+|+|+.+...
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~G 346 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIG 346 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCC
Confidence 46789999999999999999999 99999999997654
No 305
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=97.22 E-value=0.00024 Score=64.55 Aligned_cols=43 Identities=35% Similarity=0.382 Sum_probs=32.1
Q ss_pred CCCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCCCCc
Q 045695 29 PVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYGNPN 71 (277)
Q Consensus 29 ~~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~~~~ 71 (277)
|+.+|||||+|.|..-+.+|..|+. |.+||.+||++...+.+.
T Consensus 1 m~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~a 44 (438)
T PF00996_consen 1 MDEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWA 44 (438)
T ss_dssp --SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-
T ss_pred CCccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchh
Confidence 4679999999999999999999999 999999999988775443
No 306
>PLN03000 amine oxidase
Probab=97.22 E-value=0.00034 Score=68.36 Aligned_cols=38 Identities=32% Similarity=0.422 Sum_probs=34.7
Q ss_pred CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCC
Q 045695 31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG 68 (277)
Q Consensus 31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~ 68 (277)
...+|+|||+|++|+.+|+.|.+ |++|+|+|+.....+
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGG 221 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGG 221 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCC
Confidence 46899999999999999999999 999999999877654
No 307
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.21 E-value=0.0032 Score=58.30 Aligned_cols=33 Identities=24% Similarity=0.387 Sum_probs=30.1
Q ss_pred ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~ 65 (277)
-.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus 175 ~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~ 208 (466)
T PRK06115 175 KHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDR 208 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCC
Confidence 479999999999999999999 999999999754
No 308
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.19 E-value=0.00029 Score=69.04 Aligned_cols=33 Identities=30% Similarity=0.428 Sum_probs=30.0
Q ss_pred cEEEECCChhhHHHHhhhhC---CCcEEEEcCCCCC
Q 045695 34 DYIIIGGGTAGCPLAATLSQ---NASVLLLERGGSP 66 (277)
Q Consensus 34 DviIIGsG~aG~~aA~~La~---g~~VlvlE~g~~~ 66 (277)
+|+|||+|++|+++|+.|++ |++|+|+||....
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~ 37 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPY 37 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCC
Confidence 69999999999999999997 5899999998753
No 309
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.19 E-value=0.0033 Score=58.16 Aligned_cols=33 Identities=21% Similarity=0.460 Sum_probs=30.1
Q ss_pred ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~ 65 (277)
-.++|||+|..|+-+|..|++ |.+|.++|+++.
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~ 211 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDR 211 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCc
Confidence 379999999999999999999 999999998854
No 310
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.18 E-value=0.00041 Score=64.47 Aligned_cols=36 Identities=25% Similarity=0.374 Sum_probs=32.8
Q ss_pred CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695 31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (277)
Q Consensus 31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~ 66 (277)
...+|+|||+|++|+.+|..|++ |++|+|+|+....
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~ 178 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRC 178 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 34799999999999999999999 9999999998754
No 311
>PLN02507 glutathione reductase
Probab=97.17 E-value=0.0032 Score=58.78 Aligned_cols=33 Identities=24% Similarity=0.315 Sum_probs=30.1
Q ss_pred ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~ 65 (277)
-.++|||+|..|+-.|..|++ |.+|.|+|+++.
T Consensus 204 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ 237 (499)
T PLN02507 204 KRAVVLGGGYIAVEFASIWRGMGATVDLFFRKEL 237 (499)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCC
Confidence 379999999999999999999 999999998854
No 312
>PRK14727 putative mercuric reductase; Provisional
Probab=97.16 E-value=0.004 Score=57.85 Aligned_cols=31 Identities=19% Similarity=0.392 Sum_probs=28.7
Q ss_pred ccEEEECCChhhHHHHhhhhC-CCcEEEEcCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERG 63 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g 63 (277)
-.++|||+|..|+-+|..|++ |.+|.|+++.
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~ 220 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARS 220 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC
Confidence 379999999999999999999 9999999875
No 313
>PRK07846 mycothione reductase; Reviewed
Probab=97.16 E-value=0.0038 Score=57.52 Aligned_cols=33 Identities=27% Similarity=0.519 Sum_probs=30.7
Q ss_pred ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~ 65 (277)
-.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ 200 (451)
T PRK07846 167 ESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGR 200 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCc
Confidence 489999999999999999999 999999999854
No 314
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.15 E-value=0.0032 Score=57.89 Aligned_cols=33 Identities=27% Similarity=0.426 Sum_probs=30.0
Q ss_pred ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~ 65 (277)
-.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus 167 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~ 200 (446)
T TIGR01424 167 KSILILGGGYIAVEFAGIWRGLGVQVTLIYRGEL 200 (446)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCC
Confidence 369999999999999999999 999999998854
No 315
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.14 E-value=0.0037 Score=61.55 Aligned_cols=32 Identities=25% Similarity=0.397 Sum_probs=29.8
Q ss_pred cEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (277)
Q Consensus 34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~ 65 (277)
.++|||+|..|+-+|..|++ |.+|.|+|+.+.
T Consensus 142 ~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ 174 (785)
T TIGR02374 142 KAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPG 174 (785)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCeEEEEccCCc
Confidence 69999999999999999999 999999998754
No 316
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.12 E-value=0.0022 Score=63.47 Aligned_cols=33 Identities=21% Similarity=0.286 Sum_probs=29.2
Q ss_pred cEEEECCChhhHHHHhhhhC-----CCcEEEEcCCCCC
Q 045695 34 DYIIIGGGTAGCPLAATLSQ-----NASVLLLERGGSP 66 (277)
Q Consensus 34 DviIIGsG~aG~~aA~~La~-----g~~VlvlE~g~~~ 66 (277)
.|||||+|++|+.+|..|.+ +.+|+|+++.+..
T Consensus 5 kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~ 42 (847)
T PRK14989 5 RLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRI 42 (847)
T ss_pred cEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCC
Confidence 79999999999999999864 4789999999764
No 317
>PLN02976 amine oxidase
Probab=97.11 E-value=0.00052 Score=69.85 Aligned_cols=39 Identities=33% Similarity=0.410 Sum_probs=34.4
Q ss_pred CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCC
Q 045695 30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG 68 (277)
Q Consensus 30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~ 68 (277)
...+||+|||+|++|+++|+.|++ |.+|+|||+.....+
T Consensus 691 ~~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGG 730 (1713)
T PLN02976 691 VDRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGG 730 (1713)
T ss_pred CCCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCC
Confidence 345899999999999999999999 999999999766543
No 318
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.10 E-value=0.0044 Score=56.88 Aligned_cols=32 Identities=28% Similarity=0.489 Sum_probs=29.6
Q ss_pred cEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (277)
Q Consensus 34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~ 65 (277)
.++|||+|..|+-.|..|++ |.+|.|+|+++.
T Consensus 160 ~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~ 192 (441)
T PRK08010 160 HLGILGGGYIGVEFASMFANFGSKVTILEAASL 192 (441)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 79999999999999999999 999999999754
No 319
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=97.09 E-value=0.0064 Score=55.54 Aligned_cols=33 Identities=33% Similarity=0.578 Sum_probs=30.2
Q ss_pred ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~ 65 (277)
-.|+|||+|..|+-+|..|++ |.+|.++++++.
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~ 171 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSER 171 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcc
Confidence 379999999999999999999 999999998854
No 320
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.06 E-value=0.00058 Score=64.73 Aligned_cols=37 Identities=30% Similarity=0.375 Sum_probs=33.0
Q ss_pred CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCC
Q 045695 31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY 67 (277)
Q Consensus 31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~ 67 (277)
...+|+|||+|++|+++|+.|++ |.+|+|+|+.+...
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~G 173 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLG 173 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 45689999999999999999999 99999999986543
No 321
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.03 E-value=0.0077 Score=55.29 Aligned_cols=32 Identities=16% Similarity=0.314 Sum_probs=30.0
Q ss_pred cEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (277)
Q Consensus 34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~ 65 (277)
.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus 150 ~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~ 182 (438)
T PRK13512 150 KALVVGAGYISLEVLENLYERGLHPTLIHRSDK 182 (438)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence 79999999999999999999 999999999854
No 322
>PRK13984 putative oxidoreductase; Provisional
Probab=96.94 E-value=0.0011 Score=63.41 Aligned_cols=37 Identities=27% Similarity=0.283 Sum_probs=33.6
Q ss_pred CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCC
Q 045695 31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY 67 (277)
Q Consensus 31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~ 67 (277)
...+|+|||+|++|+++|..|++ |++|+|+|+.....
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~g 319 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPG 319 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 46789999999999999999999 99999999987653
No 323
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.94 E-value=0.001 Score=59.95 Aligned_cols=36 Identities=44% Similarity=0.769 Sum_probs=32.6
Q ss_pred CCCCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCC
Q 045695 28 QPVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERG 63 (277)
Q Consensus 28 ~~~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g 63 (277)
..+..|||||||+|-||+-||...|+ |.+.++|-..
T Consensus 24 s~~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 24 SSTSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred cCCCcccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence 33679999999999999999999999 9999999775
No 324
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=96.91 E-value=0.011 Score=54.50 Aligned_cols=33 Identities=24% Similarity=0.463 Sum_probs=30.4
Q ss_pred ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~ 65 (277)
-.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ 203 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTK 203 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCc
Confidence 479999999999999999999 999999998754
No 325
>KOG2403 consensus Succinate dehydrogenase, flavoprotein subunit [Energy production and conversion]
Probab=96.86 E-value=0.0016 Score=59.74 Aligned_cols=35 Identities=23% Similarity=0.388 Sum_probs=31.8
Q ss_pred CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695 32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (277)
Q Consensus 32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~ 66 (277)
.||.+|||+|.+|+-+|..|+| |.++.++-+-...
T Consensus 55 ~~da~vvgaggAGlr~~~~lae~g~~~a~itkl~p~ 90 (642)
T KOG2403|consen 55 TYDAVVVGAGGAGLRAARGLAELGEKTAVITKLFPT 90 (642)
T ss_pred eceeEEEeccchhhhhhhhhhhcCceEEEEeccccc
Confidence 4899999999999999999999 9999999887543
No 326
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.86 E-value=0.0051 Score=55.82 Aligned_cols=34 Identities=29% Similarity=0.432 Sum_probs=28.7
Q ss_pred ccEEEECCChhhHHHHhhhhC---C-CcEEEEcCCCCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ---N-ASVLLLERGGSP 66 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~---g-~~VlvlE~g~~~ 66 (277)
++|+|||+|++|+.+|..|.+ . .+|.|+|+...-
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~ 39 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNF 39 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEecccccc
Confidence 689999999999999999976 2 349999998653
No 327
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=96.85 E-value=0.017 Score=53.36 Aligned_cols=33 Identities=36% Similarity=0.629 Sum_probs=30.4
Q ss_pred ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~ 65 (277)
-.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus 170 k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~ 203 (460)
T PRK06292 170 KSLAVIGGGVIGLELGQALSRLGVKVTVFERGDR 203 (460)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Confidence 379999999999999999999 999999999854
No 328
>PRK13748 putative mercuric reductase; Provisional
Probab=96.84 E-value=0.0082 Score=56.87 Aligned_cols=31 Identities=23% Similarity=0.392 Sum_probs=29.0
Q ss_pred ccEEEECCChhhHHHHhhhhC-CCcEEEEcCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERG 63 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g 63 (277)
-.++|||+|..|+-+|..|++ |.+|.||++.
T Consensus 271 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~ 302 (561)
T PRK13748 271 ERLAVIGSSVVALELAQAFARLGSKVTILARS 302 (561)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEecC
Confidence 379999999999999999999 9999999985
No 329
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=96.81 E-value=0.0013 Score=59.44 Aligned_cols=34 Identities=32% Similarity=0.398 Sum_probs=30.1
Q ss_pred ccEEEECCChhhHHHHhhhhC-CC--cEEEEcCCCCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-NA--SVLLLERGGSP 66 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-g~--~VlvlE~g~~~ 66 (277)
.+|||||+|++|+.+|..|++ |. +|+|+++....
T Consensus 4 ~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~ 40 (396)
T PRK09754 4 KTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHL 40 (396)
T ss_pred CcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCC
Confidence 479999999999999999998 75 89999998653
No 330
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=96.79 E-value=0.021 Score=54.95 Aligned_cols=33 Identities=18% Similarity=0.199 Sum_probs=30.4
Q ss_pred cEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (277)
Q Consensus 34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~ 66 (277)
.++|||+|..|+-.|..|++ |.+|.|||+++..
T Consensus 314 ~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~l 347 (659)
T PTZ00153 314 YMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQL 347 (659)
T ss_pred ceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcc
Confidence 79999999999999999999 9999999998653
No 331
>PRK14694 putative mercuric reductase; Provisional
Probab=96.78 E-value=0.011 Score=54.80 Aligned_cols=31 Identities=23% Similarity=0.417 Sum_probs=28.7
Q ss_pred ccEEEECCChhhHHHHhhhhC-CCcEEEEcCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERG 63 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g 63 (277)
-.++|||+|..|+-+|..|++ |.+|.|++++
T Consensus 179 ~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~ 210 (468)
T PRK14694 179 ERLLVIGASVVALELAQAFARLGSRVTVLARS 210 (468)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEECC
Confidence 379999999999999999999 9999999875
No 332
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=96.77 E-value=0.006 Score=54.89 Aligned_cols=35 Identities=34% Similarity=0.636 Sum_probs=28.8
Q ss_pred CccEEEECCChhhHHHHhhhhC--C------------CcEEEEcCCCCC
Q 045695 32 YYDYIIIGGGTAGCPLAATLSQ--N------------ASVLLLERGGSP 66 (277)
Q Consensus 32 ~~DviIIGsG~aG~~aA~~La~--g------------~~VlvlE~g~~~ 66 (277)
.-+++|||||++|.=.|-+|++ . .+|+|||+++..
T Consensus 155 ~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~I 203 (405)
T COG1252 155 LLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRI 203 (405)
T ss_pred eeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchh
Confidence 3579999999999999999976 2 278888888654
No 333
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=96.77 E-value=0.0015 Score=57.97 Aligned_cols=36 Identities=47% Similarity=0.817 Sum_probs=31.3
Q ss_pred CCCccEEEECCChhhHHHHhhhhC-----CCcEEEEcCCCC
Q 045695 30 VSYYDYIIIGGGTAGCPLAATLSQ-----NASVLLLERGGS 65 (277)
Q Consensus 30 ~~~~DviIIGsG~aG~~aA~~La~-----g~~VlvlE~g~~ 65 (277)
...|||||||||+.|.+.|..|.. ..||+++|.+..
T Consensus 34 ~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s 74 (481)
T KOG3855|consen 34 TAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDS 74 (481)
T ss_pred cccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccC
Confidence 448999999999999999999875 379999999954
No 334
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=96.77 E-value=0.0016 Score=58.07 Aligned_cols=39 Identities=28% Similarity=0.370 Sum_probs=32.8
Q ss_pred CCCccEEEECCChhhHHHHhhhhC-CCc--EEEEcCCCCCCC
Q 045695 30 VSYYDYIIIGGGTAGCPLAATLSQ-NAS--VLLLERGGSPYG 68 (277)
Q Consensus 30 ~~~~DviIIGsG~aG~~aA~~La~-g~~--VlvlE~g~~~~~ 68 (277)
....+|+|||+|++|+++||.|++ +.+ |+|.|++++..+
T Consensus 9 ~~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGG 50 (491)
T KOG1276|consen 9 VSGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGG 50 (491)
T ss_pred eecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccc
Confidence 456799999999999999999999 654 567999987654
No 335
>PLN02546 glutathione reductase
Probab=96.75 E-value=0.012 Score=55.66 Aligned_cols=33 Identities=21% Similarity=0.334 Sum_probs=30.2
Q ss_pred ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~ 65 (277)
-.++|||+|..|+=.|..|++ |.+|.|+|+++.
T Consensus 253 k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~ 286 (558)
T PLN02546 253 EKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKK 286 (558)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccc
Confidence 379999999999999999999 999999998854
No 336
>PTZ00058 glutathione reductase; Provisional
Probab=96.75 E-value=0.013 Score=55.51 Aligned_cols=33 Identities=21% Similarity=0.324 Sum_probs=30.4
Q ss_pred ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~ 65 (277)
-.++|||+|..|+-.|..|++ |.+|.|+|+++.
T Consensus 238 k~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~ 271 (561)
T PTZ00058 238 KRIGIAGSGYIAVELINVVNRLGAESYIFARGNR 271 (561)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccc
Confidence 479999999999999999999 999999999854
No 337
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=96.75 E-value=0.014 Score=54.33 Aligned_cols=30 Identities=17% Similarity=0.276 Sum_probs=28.2
Q ss_pred cEEEECCChhhHHHHhhhhC-CCcEEEEcCC
Q 045695 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERG 63 (277)
Q Consensus 34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g 63 (277)
.++|||+|..|+=+|..|++ |.+|.|+++.
T Consensus 182 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 212 (484)
T TIGR01438 182 KTLVVGASYVALECAGFLAGIGLDVTVMVRS 212 (484)
T ss_pred CEEEECCCHHHHHHHHHHHHhCCcEEEEEec
Confidence 69999999999999999999 9999999874
No 338
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=96.75 E-value=0.0019 Score=59.02 Aligned_cols=37 Identities=14% Similarity=0.273 Sum_probs=32.6
Q ss_pred CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695 30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (277)
Q Consensus 30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~ 66 (277)
....+|||||+|.+|+.+|.+|.. +.+|+|||+.+..
T Consensus 8 ~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~ 45 (424)
T PTZ00318 8 LKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHM 45 (424)
T ss_pred CCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCc
Confidence 345699999999999999999988 8999999988654
No 339
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=96.65 E-value=0.016 Score=53.44 Aligned_cols=32 Identities=34% Similarity=0.514 Sum_probs=28.8
Q ss_pred ccEEEECCChhhHHHHhhhhC-CC-cEEEEcCCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGG 64 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~ 64 (277)
-.|+|||+|..|+-+|..|++ |. +|.++++..
T Consensus 274 ~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~ 307 (457)
T PRK11749 274 KRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG 307 (457)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 479999999999999999999 87 899999863
No 340
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=96.63 E-value=0.011 Score=58.05 Aligned_cols=32 Identities=25% Similarity=0.378 Sum_probs=28.8
Q ss_pred ccEEEECCChhhHHHHhhhhC-CCc-EEEEcCCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-NAS-VLLLERGG 64 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-g~~-VlvlE~g~ 64 (277)
-.|+|||+|..|+=+|..|.+ |.+ |.|+++..
T Consensus 571 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~ 604 (752)
T PRK12778 571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS 604 (752)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 379999999999999999999 986 99998873
No 341
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=96.62 E-value=0.016 Score=51.51 Aligned_cols=31 Identities=23% Similarity=0.289 Sum_probs=28.0
Q ss_pred cEEEECCChhhHHHHhhhhC-CCc-EEEEcCCC
Q 045695 34 DYIIIGGGTAGCPLAATLSQ-NAS-VLLLERGG 64 (277)
Q Consensus 34 DviIIGsG~aG~~aA~~La~-g~~-VlvlE~g~ 64 (277)
.++|||+|..|+-+|..|++ |.+ |.|+++..
T Consensus 174 ~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~ 206 (352)
T PRK12770 174 KVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT 206 (352)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 69999999999999999988 886 99998763
No 342
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=96.55 E-value=0.02 Score=53.28 Aligned_cols=34 Identities=21% Similarity=0.290 Sum_probs=28.1
Q ss_pred ccEEEECCChhhHHHHhhh---hC-CCcEEEEcCCCCC
Q 045695 33 YDYIIIGGGTAGCPLAATL---SQ-NASVLLLERGGSP 66 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~L---a~-g~~VlvlE~g~~~ 66 (277)
-.++|||+|..|+-+|..+ .+ |.+|.|+|+++..
T Consensus 188 ~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~i 225 (486)
T TIGR01423 188 RRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMI 225 (486)
T ss_pred CeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCcc
Confidence 3699999999999999644 45 8999999998653
No 343
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=96.51 E-value=0.0093 Score=54.01 Aligned_cols=33 Identities=39% Similarity=0.658 Sum_probs=31.1
Q ss_pred ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~ 65 (277)
||++|||+|++|+++|+.|++ |.+|+|+|++..
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~~ 34 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQS 34 (419)
T ss_pred CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCCc
Confidence 699999999999999999999 999999999853
No 344
>PTZ00052 thioredoxin reductase; Provisional
Probab=96.46 E-value=0.027 Score=52.68 Aligned_cols=30 Identities=23% Similarity=0.317 Sum_probs=28.2
Q ss_pred cEEEECCChhhHHHHhhhhC-CCcEEEEcCC
Q 045695 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERG 63 (277)
Q Consensus 34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g 63 (277)
.++|||+|..|+-+|..|++ |.+|.|+++.
T Consensus 184 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 214 (499)
T PTZ00052 184 KTLIVGASYIGLETAGFLNELGFDVTVAVRS 214 (499)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEEcC
Confidence 79999999999999999999 9999999874
No 345
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=96.42 E-value=0.057 Score=51.19 Aligned_cols=32 Identities=31% Similarity=0.464 Sum_probs=29.8
Q ss_pred ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~ 64 (277)
-.++|||+|..|+-+|..|++ |.+|.++++++
T Consensus 144 ~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~ 176 (555)
T TIGR03143 144 MDVFVIGGGFAAAEEAVFLTRYASKVTVIVREP 176 (555)
T ss_pred CEEEEECCCHHHHHHHHHHHccCCEEEEEEeCC
Confidence 479999999999999999999 99999999984
No 346
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=96.42 E-value=0.004 Score=55.92 Aligned_cols=60 Identities=18% Similarity=0.199 Sum_probs=41.5
Q ss_pred HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccccHHHHhccC
Q 045695 203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 277 (277)
Q Consensus 203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~tp~lLl~SG 277 (277)
+....++.|+++++++.|.++..+.+ . ..|+.. +++ ++. ++.||+|+|.-..+.++..+|
T Consensus 189 l~~~l~~~gV~i~~~~~v~~i~~~~~-----~-~~v~~~--~g~--~i~-----~D~vI~a~G~~p~~~l~~~~g 248 (377)
T PRK04965 189 LQHRLTEMGVHLLLKSQLQGLEKTDS-----G-IRATLD--SGR--SIE-----VDAVIAAAGLRPNTALARRAG 248 (377)
T ss_pred HHHHHHhCCCEEEECCeEEEEEccCC-----E-EEEEEc--CCc--EEE-----CCEEEECcCCCcchHHHHHCC
Confidence 44456678999999999999986554 2 224433 454 343 589999999876667765554
No 347
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=96.41 E-value=0.0031 Score=57.86 Aligned_cols=37 Identities=32% Similarity=0.372 Sum_probs=33.6
Q ss_pred CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCC
Q 045695 32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG 68 (277)
Q Consensus 32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~ 68 (277)
--.|.|||||++|+++|..|+. |++|+|.|+-+...+
T Consensus 123 g~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GG 160 (457)
T COG0493 123 GKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGG 160 (457)
T ss_pred CCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCce
Confidence 3689999999999999999999 999999999877643
No 348
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=96.33 E-value=0.02 Score=53.09 Aligned_cols=33 Identities=24% Similarity=0.300 Sum_probs=28.9
Q ss_pred ccEEEECCChhhHHHHhhhhC-CC-cEEEEcCCCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGS 65 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~~ 65 (277)
-.++|||+|..|+-+|..+.+ |. +|.|+++.+.
T Consensus 283 k~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~ 317 (467)
T TIGR01318 283 KRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDE 317 (467)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCc
Confidence 479999999999999999888 85 7999998743
No 349
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=96.33 E-value=0.042 Score=48.70 Aligned_cols=36 Identities=17% Similarity=0.316 Sum_probs=28.0
Q ss_pred CCCccEEEECCChhhHHHHhhhhC-CC--cEEEEcCCCC
Q 045695 30 VSYYDYIIIGGGTAGCPLAATLSQ-NA--SVLLLERGGS 65 (277)
Q Consensus 30 ~~~~DviIIGsG~aG~~aA~~La~-g~--~VlvlE~g~~ 65 (277)
.....|+|||||-+++-++..|.+ +. +|.++=|+..
T Consensus 188 ~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~ 226 (341)
T PF13434_consen 188 LAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPG 226 (341)
T ss_dssp ---EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS
T ss_pred cCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCc
Confidence 346789999999999999999998 64 8999999864
No 350
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=96.30 E-value=0.043 Score=50.87 Aligned_cols=58 Identities=16% Similarity=0.199 Sum_probs=39.5
Q ss_pred cCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEe---C-------CCceEEEEeecCCCcEEEEecCcccc-HHHHh
Q 045695 207 ANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRD---A-------TGAKHRAYLKNGPKNEIIVSAGALGS-PQLLM 274 (277)
Q Consensus 207 ~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~---~-------~g~~~~i~~~~~~a~~VVlAaG~~~t-p~lLl 274 (277)
+.+.|+++++++.+++|.-+++ ++++|++.. . .++...+. ++.||+|.|--.. ..++.
T Consensus 339 ~~~~GV~i~~~~~~~~i~~~~g-----~v~~V~~~~~~~~~g~~~~~~g~~~~i~-----~D~VI~A~G~~p~~~~l~~ 407 (471)
T PRK12810 339 AHEEGVEREFNVQTKEFEGENG-----KVTGVKVVRTELGEGDFEPVEGSEFVLP-----ADLVLLAMGFTGPEAGLLA 407 (471)
T ss_pred HHHcCCeEEeccCceEEEccCC-----EEEEEEEEEEEecCCCccccCCceEEEE-----CCEEEECcCcCCCchhhcc
Confidence 3446899999999999975444 898888752 1 13344554 6999999995433 33443
No 351
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.27 E-value=0.035 Score=53.73 Aligned_cols=32 Identities=22% Similarity=0.338 Sum_probs=27.6
Q ss_pred ccEEEECCChhhHHHHhhhhC-CC-cEEEEcCCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGG 64 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~ 64 (277)
-.|+|||+|..|+-+|..+.+ |. +|.++++..
T Consensus 469 k~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~ 502 (654)
T PRK12769 469 LNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRD 502 (654)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecC
Confidence 479999999999999998888 85 699988874
No 352
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.27 E-value=0.045 Score=48.80 Aligned_cols=38 Identities=34% Similarity=0.307 Sum_probs=34.0
Q ss_pred CCCCccEEEECCChhhHHHHhhhhC--CCcEEEEcCCCCC
Q 045695 29 PVSYYDYIIIGGGTAGCPLAATLSQ--NASVLLLERGGSP 66 (277)
Q Consensus 29 ~~~~~DviIIGsG~aG~~aA~~La~--g~~VlvlE~g~~~ 66 (277)
++..+|+|.||-|+.-++.|..|.+ +.+++.|||.+..
T Consensus 2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F 41 (436)
T COG3486 2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDF 41 (436)
T ss_pred CCcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCC
Confidence 4567999999999999999999999 5899999999754
No 353
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=96.26 E-value=0.005 Score=54.17 Aligned_cols=36 Identities=36% Similarity=0.492 Sum_probs=31.7
Q ss_pred ccEEEECCChhhHHHHhhhhC---CCcEEEEcCCCCCCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ---NASVLLLERGGSPYG 68 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~---g~~VlvlE~g~~~~~ 68 (277)
.-|+|||||+||..+|..|.+ +.+|.|+|+-+.+++
T Consensus 21 p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFG 59 (468)
T KOG1800|consen 21 PRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFG 59 (468)
T ss_pred ceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccc
Confidence 379999999999999999765 689999999987764
No 354
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=96.11 E-value=0.056 Score=54.33 Aligned_cols=32 Identities=25% Similarity=0.411 Sum_probs=29.1
Q ss_pred ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~ 64 (277)
-.|+|||+|..|+=+|..+.+ |.+|.++.+..
T Consensus 448 k~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~ 480 (944)
T PRK12779 448 KEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRT 480 (944)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEEecC
Confidence 479999999999999999999 99999998773
No 355
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=96.00 E-value=0.056 Score=54.76 Aligned_cols=31 Identities=19% Similarity=0.260 Sum_probs=26.3
Q ss_pred ccEEEECCChhhHHHHhhhhC-CCc-EEEEcCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-NAS-VLLLERG 63 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-g~~-VlvlE~g 63 (277)
-.|+|||+|..|+=+|..+.+ |.+ |.++.+.
T Consensus 572 k~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr 604 (1006)
T PRK12775 572 KSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRR 604 (1006)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeec
Confidence 479999999999999999888 874 7777654
No 356
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=95.78 E-value=0.09 Score=48.04 Aligned_cols=32 Identities=34% Similarity=0.768 Sum_probs=27.3
Q ss_pred cEEEECCChhhHHHHhhhhC---------------CCcEEEEcCCCC
Q 045695 34 DYIIIGGGTAGCPLAATLSQ---------------NASVLLLERGGS 65 (277)
Q Consensus 34 DviIIGsG~aG~~aA~~La~---------------g~~VlvlE~g~~ 65 (277)
.++|||+|..|+-.|..|++ +.+|.|+|+++.
T Consensus 175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ 221 (424)
T PTZ00318 175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSE 221 (424)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCc
Confidence 79999999999999998873 467899988854
No 357
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=95.69 E-value=0.01 Score=58.86 Aligned_cols=38 Identities=32% Similarity=0.391 Sum_probs=34.7
Q ss_pred CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCC
Q 045695 31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG 68 (277)
Q Consensus 31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~ 68 (277)
+-..|.|||||++|+++|-.|-+ |+-|+|-||.++..+
T Consensus 1784 tg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~gg 1822 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGG 1822 (2142)
T ss_pred cCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCc
Confidence 34689999999999999999999 999999999988764
No 358
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=95.65 E-value=0.0085 Score=53.03 Aligned_cols=42 Identities=31% Similarity=0.487 Sum_probs=37.1
Q ss_pred CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCCCCc
Q 045695 30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYGNPN 71 (277)
Q Consensus 30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~~~~ 71 (277)
..+|||||+|.|..=|..+..|+. |.+||.+||.+...+.+.
T Consensus 2 deeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~sa 44 (440)
T KOG1439|consen 2 DEEYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGESA 44 (440)
T ss_pred CCceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCcccc
Confidence 456999999999999999999999 999999999988765443
No 359
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=95.64 E-value=0.0097 Score=51.49 Aligned_cols=34 Identities=26% Similarity=0.335 Sum_probs=30.6
Q ss_pred ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~ 66 (277)
..|.|||+|.+|.-||+++|+ |.+|.|.|-.+..
T Consensus 4 ~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k 38 (439)
T COG1206 4 QPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVK 38 (439)
T ss_pred CceEEEcccccccHHHHHHHHcCCcEEEEEccccc
Confidence 468999999999999999999 9999999987543
No 360
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.58 E-value=0.015 Score=51.60 Aligned_cols=42 Identities=33% Similarity=0.362 Sum_probs=38.2
Q ss_pred CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCCCCc
Q 045695 30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYGNPN 71 (277)
Q Consensus 30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~~~~ 71 (277)
+.+|||||||.|..=...|...++ |.+||=||+....++++.
T Consensus 6 P~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~wa 48 (547)
T KOG4405|consen 6 PEEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGNWA 48 (547)
T ss_pred chhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCccc
Confidence 468999999999999999999999 999999999988876665
No 361
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=95.57 E-value=0.012 Score=52.91 Aligned_cols=36 Identities=25% Similarity=0.411 Sum_probs=33.5
Q ss_pred ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG 68 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~ 68 (277)
.+++|||+|..|+.+|..|++ |++|+++|+.+....
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~ 173 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGG 173 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccch
Confidence 599999999999999999999 999999999987654
No 362
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=95.48 E-value=0.079 Score=51.24 Aligned_cols=32 Identities=34% Similarity=0.441 Sum_probs=28.4
Q ss_pred ccEEEECCChhhHHHHhhhhC-CC-cEEEEcCCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGG 64 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~ 64 (277)
-.|+|||+|..|+-+|..|.+ |. +|.|+++..
T Consensus 324 k~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~ 357 (652)
T PRK12814 324 KKVVVIGGGNTAIDAARTALRLGAESVTILYRRT 357 (652)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 479999999999999999998 86 699998774
No 363
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=95.43 E-value=0.11 Score=47.21 Aligned_cols=56 Identities=20% Similarity=0.338 Sum_probs=42.0
Q ss_pred hhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccccHHHH
Q 045695 205 EYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLL 273 (277)
Q Consensus 205 ~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~tp~lL 273 (277)
.+.++.|+++..++.+..+..+.+| +++-|...| ++. +. ++.||+..|.--...++
T Consensus 263 ~y~e~kgVk~~~~t~~s~l~~~~~G----ev~~V~l~d--g~~--l~-----adlvv~GiG~~p~t~~~ 318 (478)
T KOG1336|consen 263 DYYENKGVKFYLGTVVSSLEGNSDG----EVSEVKLKD--GKT--LE-----ADLVVVGIGIKPNTSFL 318 (478)
T ss_pred HHHHhcCeEEEEecceeecccCCCC----cEEEEEecc--CCE--ec-----cCeEEEeeccccccccc
Confidence 3456679999999999999998876 888888874 543 32 68899998875544443
No 364
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=95.28 E-value=0.022 Score=49.15 Aligned_cols=44 Identities=25% Similarity=0.471 Sum_probs=35.6
Q ss_pred CCCCCCccEEEECCChhhHHHHhhhhC--C-CcEEEEcCCCCCCCCC
Q 045695 27 AQPVSYYDYIIIGGGTAGCPLAATLSQ--N-ASVLLLERGGSPYGNP 70 (277)
Q Consensus 27 ~~~~~~~DviIIGsG~aG~~aA~~La~--g-~~VlvlE~g~~~~~~~ 70 (277)
.....++.|+|||+|.+|+..|..+.+ + -+|.|||-..+....|
T Consensus 34 ~~~~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQP 80 (446)
T KOG3851|consen 34 RFARKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQP 80 (446)
T ss_pred hhcccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccCc
Confidence 334568999999999999999999988 5 5899999876654433
No 365
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=95.16 E-value=0.1 Score=50.31 Aligned_cols=32 Identities=28% Similarity=0.303 Sum_probs=27.3
Q ss_pred ccEEEECCChhhHHHHhhhhC-CC-cEEEEcCCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGG 64 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~ 64 (277)
-.|+|||+|..|+-+|..+.+ |. +|.++++..
T Consensus 452 k~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~ 485 (639)
T PRK12809 452 KRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRD 485 (639)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 479999999999999988777 84 799998874
No 366
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=95.11 E-value=0.021 Score=44.08 Aligned_cols=30 Identities=40% Similarity=0.579 Sum_probs=28.5
Q ss_pred EEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695 35 YIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (277)
Q Consensus 35 viIIGsG~aG~~aA~~La~-g~~VlvlE~g~ 64 (277)
++|||+|..|+..|+.|++ |.+|.++-|..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 6899999999999999999 99999999986
No 367
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=95.09 E-value=0.031 Score=49.15 Aligned_cols=38 Identities=32% Similarity=0.428 Sum_probs=35.2
Q ss_pred CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCC
Q 045695 31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG 68 (277)
Q Consensus 31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~ 68 (277)
..|||||+|.|+.=+..+..|+- |.+|+.|||.+....
T Consensus 5 ~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~ 43 (434)
T COG5044 5 TLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGS 43 (434)
T ss_pred ccccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCc
Confidence 38999999999999999999999 999999999987764
No 368
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=95.06 E-value=0.033 Score=50.19 Aligned_cols=36 Identities=25% Similarity=0.408 Sum_probs=31.7
Q ss_pred CccEEEECCChhhHHHHhhhhC-C--CcEEEEcCCCCCC
Q 045695 32 YYDYIIIGGGTAGCPLAATLSQ-N--ASVLLLERGGSPY 67 (277)
Q Consensus 32 ~~DviIIGsG~aG~~aA~~La~-g--~~VlvlE~g~~~~ 67 (277)
...+||||||.+|+.+|..|.+ - .+|++||+.....
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl 41 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHL 41 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccc
Confidence 3469999999999999999998 5 8899999997654
No 369
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.01 E-value=0.024 Score=47.21 Aligned_cols=32 Identities=38% Similarity=0.636 Sum_probs=30.1
Q ss_pred cEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (277)
Q Consensus 34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~ 65 (277)
.++|||+|--|...|..|++ |++|+++|+.+.
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~ 34 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEE 34 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHH
Confidence 58999999999999999999 999999999864
No 370
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=95.01 E-value=0.021 Score=46.88 Aligned_cols=58 Identities=14% Similarity=0.200 Sum_probs=40.9
Q ss_pred hcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceEEEEeecCCCcEEEEecCccccHHHH
Q 045695 206 YANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGSPQLL 273 (277)
Q Consensus 206 ~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~i~~~~~~a~~VVlAaG~~~tp~lL 273 (277)
..+.+++++++++.+.+..-|.+ .+.++++++ ..|+...+. .+.+..+-|---.+++|
T Consensus 202 a~~npnI~v~~nt~~~ea~gd~~-----~l~~l~ikn~~tge~~dl~-----v~GlFf~IGH~Pat~~l 260 (322)
T KOG0404|consen 202 AEKNPNIEVLYNTVAVEALGDGK-----LLNGLRIKNVKTGEETDLP-----VSGLFFAIGHSPATKFL 260 (322)
T ss_pred HhcCCCeEEEechhhhhhccCcc-----cccceEEEecccCcccccc-----cceeEEEecCCchhhHh
Confidence 56778999999999998887744 788888886 345555554 36777777754444444
No 371
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=94.95 E-value=0.079 Score=48.34 Aligned_cols=34 Identities=32% Similarity=0.584 Sum_probs=31.9
Q ss_pred CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695 31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (277)
Q Consensus 31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~ 64 (277)
++|||+|||+|.+|+++|+.|++ |.+|+|||++.
T Consensus 1 ~~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~ 35 (422)
T PRK05329 1 MKFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ 35 (422)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence 36899999999999999999999 99999999974
No 372
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=94.93 E-value=0.03 Score=45.26 Aligned_cols=34 Identities=26% Similarity=0.441 Sum_probs=28.2
Q ss_pred CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695 32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (277)
Q Consensus 32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~ 65 (277)
.-.|+|||+|.++.-+|..|++ |.+|.++=|.+.
T Consensus 167 ~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~ 201 (203)
T PF13738_consen 167 GKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPI 201 (203)
T ss_dssp TSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS--
T ss_pred CCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCC
Confidence 4689999999999999999999 999999998864
No 373
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=94.79 E-value=0.012 Score=49.23 Aligned_cols=33 Identities=36% Similarity=0.641 Sum_probs=29.2
Q ss_pred EEEECCChhhHHHHhhhhC---CCcEEEEcCCCCCC
Q 045695 35 YIIIGGGTAGCPLAATLSQ---NASVLLLERGGSPY 67 (277)
Q Consensus 35 viIIGsG~aG~~aA~~La~---g~~VlvlE~g~~~~ 67 (277)
+||||+|++|.++|-.|+. ..+|++|.+.+..-
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitass~vk 37 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVK 37 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHH
Confidence 7999999999999999997 58999999886543
No 374
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=94.75 E-value=0.22 Score=44.31 Aligned_cols=49 Identities=20% Similarity=0.255 Sum_probs=36.4
Q ss_pred cCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceEEEEeecCCCcEEEEecC
Q 045695 207 ANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAG 265 (277)
Q Consensus 207 ~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~i~~~~~~a~~VVlAaG 265 (277)
..++|+.+++++.|+....+++| .+-|++.+ ++++.+++. .+.+.+|.|
T Consensus 262 L~kQgikF~l~tkv~~a~~~~dg-----~v~i~ve~ak~~k~~tle-----~DvlLVsiG 311 (506)
T KOG1335|consen 262 LQKQGIKFKLGTKVTSATRNGDG-----PVEIEVENAKTGKKETLE-----CDVLLVSIG 311 (506)
T ss_pred HHhcCceeEeccEEEEeeccCCC-----ceEEEEEecCCCceeEEE-----eeEEEEEcc
Confidence 34479999999999999998873 34456665 356666665 488888887
No 375
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=94.70 E-value=0.027 Score=44.00 Aligned_cols=30 Identities=37% Similarity=0.495 Sum_probs=28.4
Q ss_pred EEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695 35 YIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (277)
Q Consensus 35 viIIGsG~aG~~aA~~La~-g~~VlvlE~g~ 64 (277)
|.|||+|..|.++|..|++ |++|.|..+..
T Consensus 2 I~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred EEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 7899999999999999999 99999999974
No 376
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=94.48 E-value=0.042 Score=47.91 Aligned_cols=32 Identities=28% Similarity=0.460 Sum_probs=29.7
Q ss_pred ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~ 64 (277)
..+.|||+|..|...|..|++ |.+|.++.|+.
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~ 35 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDR 35 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence 469999999999999999999 99999999974
No 377
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=94.48 E-value=0.12 Score=47.01 Aligned_cols=47 Identities=26% Similarity=0.453 Sum_probs=35.7
Q ss_pred CCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccccHHHH
Q 045695 208 NPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLL 273 (277)
Q Consensus 208 ~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~tp~lL 273 (277)
+..+++++.++.|+++.+... -+.+. +|+..++ ...|||||. +|+.|
T Consensus 138 ke~gIe~~~~t~v~~~D~~~K--------~l~~~--~Ge~~ky-------s~LilATGs--~~~~l 184 (478)
T KOG1336|consen 138 KEKGIELILGTSVVKADLASK--------TLVLG--NGETLKY-------SKLIIATGS--SAKTL 184 (478)
T ss_pred hhcCceEEEcceeEEeecccc--------EEEeC--CCceeec-------ceEEEeecC--ccccC
Confidence 456999999999999999887 34443 5776665 689999998 55443
No 378
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=94.31 E-value=0.04 Score=44.33 Aligned_cols=32 Identities=31% Similarity=0.472 Sum_probs=25.6
Q ss_pred cEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (277)
Q Consensus 34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~ 65 (277)
.|.|||.|..|+.+|..||+ |++|+-+|....
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE 34 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence 47899999999999999999 999999998743
No 379
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.30 E-value=0.045 Score=50.51 Aligned_cols=33 Identities=30% Similarity=0.377 Sum_probs=29.7
Q ss_pred cEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (277)
Q Consensus 34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~ 66 (277)
-|+|||.|.+|+++|+.|++ |++|.+.|+....
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~ 35 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP 35 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence 38999999999999999999 9999999987543
No 380
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.29 E-value=0.044 Score=50.90 Aligned_cols=31 Identities=26% Similarity=0.458 Sum_probs=28.9
Q ss_pred cEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (277)
Q Consensus 34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~ 64 (277)
.|+|||+|.+|+.+|..|++ |.+|.++|+.+
T Consensus 18 ~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 18 RVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 69999999999999999999 99999999764
No 381
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=94.22 E-value=0.047 Score=43.74 Aligned_cols=31 Identities=32% Similarity=0.488 Sum_probs=26.7
Q ss_pred EEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695 35 YIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (277)
Q Consensus 35 viIIGsG~aG~~aA~~La~-g~~VlvlE~g~~ 65 (277)
|.|||+|..|...|..++. |++|.++|+.+.
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 33 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGYEVTLYDRSPE 33 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEE-SSHH
T ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEECChH
Confidence 7899999999999999999 999999999743
No 382
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=94.18 E-value=0.13 Score=47.97 Aligned_cols=37 Identities=38% Similarity=0.517 Sum_probs=33.7
Q ss_pred CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCC
Q 045695 32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG 68 (277)
Q Consensus 32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~ 68 (277)
+.||||||||++|+++|..|++ |.+|+|+||.....+
T Consensus 1 ~~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG 38 (492)
T TIGR02733 1 ETSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGG 38 (492)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCC
Confidence 3589999999999999999999 999999999977654
No 383
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=93.87 E-value=0.62 Score=41.47 Aligned_cols=27 Identities=33% Similarity=0.666 Sum_probs=23.1
Q ss_pred cEEEECCChhhHHHHhhhhC-----C--CcEEEE
Q 045695 34 DYIIIGGGTAGCPLAATLSQ-----N--ASVLLL 60 (277)
Q Consensus 34 DviIIGsG~aG~~aA~~La~-----g--~~Vlvl 60 (277)
.++|||+|.+|+-+|..|++ | .+|.|+
T Consensus 147 ~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li 180 (364)
T TIGR03169 147 RLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI 180 (364)
T ss_pred eEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE
Confidence 79999999999999999874 3 378777
No 384
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=93.56 E-value=0.087 Score=46.07 Aligned_cols=32 Identities=31% Similarity=0.309 Sum_probs=29.7
Q ss_pred ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~ 64 (277)
..+.|||+|..|...|..|++ |++|.++.|+.
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 469999999999999999999 99999999875
No 385
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=93.48 E-value=0.071 Score=46.55 Aligned_cols=31 Identities=26% Similarity=0.359 Sum_probs=29.2
Q ss_pred cEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (277)
Q Consensus 34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~ 64 (277)
+|.|||+|..|...|..|++ |++|+++++..
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~ 35 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADP 35 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence 58999999999999999999 99999999874
No 386
>PRK13984 putative oxidoreductase; Provisional
Probab=93.44 E-value=0.88 Score=43.65 Aligned_cols=22 Identities=23% Similarity=0.613 Sum_probs=19.8
Q ss_pred ccEEEECCChhhHHHHhhhhC-C
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-N 54 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-g 54 (277)
-.|+|||+|..|+=+|..|++ +
T Consensus 419 k~VvVIGGG~~g~e~A~~l~r~~ 441 (604)
T PRK13984 419 RSLVVIGGGNVAMDIARSMARLQ 441 (604)
T ss_pred CcEEEECCchHHHHHHHHHHhcc
Confidence 479999999999999999986 5
No 387
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=93.32 E-value=0.053 Score=48.72 Aligned_cols=29 Identities=28% Similarity=0.224 Sum_probs=25.5
Q ss_pred hhhHHHHhhhhC-CCcEEEEcCCCCCCCCC
Q 045695 42 TAGCPLAATLSQ-NASVLLLERGGSPYGNP 70 (277)
Q Consensus 42 ~aG~~aA~~La~-g~~VlvlE~g~~~~~~~ 70 (277)
++|++||+.|++ |.+|+|+|+.+...+..
T Consensus 1 iaGL~aA~~L~~~G~~v~vlEa~~r~GGr~ 30 (450)
T PF01593_consen 1 IAGLAAAYYLAKAGYDVTVLEASDRVGGRI 30 (450)
T ss_dssp HHHHHHHHHHHHTTTEEEEEESSSSSBTTS
T ss_pred ChHHHHHHHHHhCCCCEEEEEcCCCCCcce
Confidence 589999999999 99999999998876533
No 388
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=93.31 E-value=0.074 Score=38.37 Aligned_cols=33 Identities=21% Similarity=0.276 Sum_probs=29.4
Q ss_pred CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695 32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (277)
Q Consensus 32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~ 64 (277)
.-.|+|||+|..|..-+..|.+ |.+|+|+....
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 3479999999999999999999 99999998773
No 389
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=93.27 E-value=0.22 Score=45.84 Aligned_cols=55 Identities=13% Similarity=0.348 Sum_probs=39.9
Q ss_pred HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCc-eEEEEeecCCCcEEEEecCc
Q 045695 203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGA-KHRAYLKNGPKNEIIVSAGA 266 (277)
Q Consensus 203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~-~~~i~~~~~~a~~VVlAaG~ 266 (277)
+...+++.|.+|++++.|++|..++++ ++++|++.+.+++ .+.+. ++.||+|+..
T Consensus 219 l~~~l~~~g~~i~l~~~V~~I~~~~~~----~v~~v~~~~~~~~~~~~~~-----a~~VI~a~p~ 274 (453)
T TIGR02731 219 IVDYITSRGGEVRLNSRLKEIVLNEDG----SVKHFVLADGEGQRRFEVT-----ADAYVSAMPV 274 (453)
T ss_pred HHHHHHhcCCEEeCCCeeEEEEECCCC----CEEEEEEecCCCCceeEEE-----CCEEEEcCCH
Confidence 444455579999999999999876664 7999999753232 22444 6899999865
No 390
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=93.25 E-value=0.087 Score=45.72 Aligned_cols=29 Identities=24% Similarity=0.473 Sum_probs=27.6
Q ss_pred cEEEECCChhhHHHHhhhhC-CCcEEEEcC
Q 045695 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLER 62 (277)
Q Consensus 34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~ 62 (277)
.+.|||+|..|+..|..|++ |++|.++.|
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 48999999999999999999 999999988
No 391
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=93.19 E-value=0.082 Score=45.24 Aligned_cols=35 Identities=20% Similarity=0.221 Sum_probs=27.6
Q ss_pred CccEEEECCChhhHHHHhhhhC-C-------CcEEEEcCCCCC
Q 045695 32 YYDYIIIGGGTAGCPLAATLSQ-N-------ASVLLLERGGSP 66 (277)
Q Consensus 32 ~~DviIIGsG~aG~~aA~~La~-g-------~~VlvlE~g~~~ 66 (277)
..+++|||+|+.|+++|..+.+ + .+|.|++-...+
T Consensus 3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~e 45 (342)
T KOG3923|consen 3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFTE 45 (342)
T ss_pred CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCcc
Confidence 4589999999999999977765 4 678888765443
No 392
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=93.01 E-value=0.61 Score=44.35 Aligned_cols=32 Identities=25% Similarity=0.386 Sum_probs=24.4
Q ss_pred ccEEEECCChhhHHHHhhhhC-C-CcEEEEcCCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-N-ASVLLLERGG 64 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-g-~~VlvlE~g~ 64 (277)
-.++|||+|..|.-.|..+.+ + .+|+|+.+.+
T Consensus 268 k~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~ 301 (564)
T PRK12771 268 KRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRT 301 (564)
T ss_pred CCEEEECChHHHHHHHHHHHHcCCCEEEEEEecC
Confidence 368889988888888887777 6 5677777764
No 393
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=93.00 E-value=0.1 Score=45.23 Aligned_cols=30 Identities=33% Similarity=0.519 Sum_probs=28.0
Q ss_pred cEEEECCChhhHHHHhhhhC-CCcEEEEcCC
Q 045695 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERG 63 (277)
Q Consensus 34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g 63 (277)
.+.|||+|..|...|..|++ |++|.++.|.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 48999999999999999999 9999999984
No 394
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.81 E-value=0.11 Score=47.72 Aligned_cols=32 Identities=28% Similarity=0.510 Sum_probs=29.7
Q ss_pred ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~ 64 (277)
-.|+|||+|..|+.+|..|++ |.+|.++|+..
T Consensus 6 k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 6 KKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 469999999999999999999 99999999974
No 395
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=92.68 E-value=1.4 Score=38.46 Aligned_cols=33 Identities=33% Similarity=0.474 Sum_probs=30.7
Q ss_pred cEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (277)
Q Consensus 34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~ 66 (277)
||+|||+|.+.+=.|..|++ +.+|.|+=|++..
T Consensus 145 ~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~ 178 (305)
T COG0492 145 DVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEF 178 (305)
T ss_pred eEEEEcCCHHHHHHHHHHHHhcCeEEEEecCccc
Confidence 99999999999999999999 9999999888653
No 396
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=92.63 E-value=0.15 Score=39.79 Aligned_cols=29 Identities=31% Similarity=0.397 Sum_probs=26.8
Q ss_pred ccEEEECCChhhHHHHhhhhC-CCcEEEEc
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLE 61 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE 61 (277)
-.++|||+|..|..-|..|.+ |.+|+||.
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 369999999999999999999 99999994
No 397
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=92.62 E-value=0.14 Score=41.78 Aligned_cols=31 Identities=26% Similarity=0.433 Sum_probs=28.3
Q ss_pred ccEEEECCChhhHHHHhhhhC-CCcEEEEcCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERG 63 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g 63 (277)
-.++|||+|-.|...|..|.+ |.+|+|+++.
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 379999999999999999999 9999999864
No 398
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=92.58 E-value=0.14 Score=41.89 Aligned_cols=30 Identities=20% Similarity=0.381 Sum_probs=28.0
Q ss_pred cEEEECCChhhHHHHhhhhC-CCcEEEEcCC
Q 045695 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERG 63 (277)
Q Consensus 34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g 63 (277)
.|+|||+|..|..-+..|.+ |.+|+|+...
T Consensus 11 ~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~ 41 (205)
T TIGR01470 11 AVLVVGGGDVALRKARLLLKAGAQLRVIAEE 41 (205)
T ss_pred eEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 69999999999999999999 9999999764
No 399
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.50 E-value=0.14 Score=44.24 Aligned_cols=31 Identities=16% Similarity=0.337 Sum_probs=28.7
Q ss_pred cEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (277)
Q Consensus 34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~ 64 (277)
.|.|||+|..|...|..|++ |++|+++++.+
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~ 34 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ 34 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence 48999999999999999999 99999999864
No 400
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.49 E-value=0.13 Score=44.42 Aligned_cols=31 Identities=16% Similarity=0.283 Sum_probs=28.8
Q ss_pred cEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (277)
Q Consensus 34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~ 64 (277)
.|.|||+|..|...|..|++ |.+|+++++..
T Consensus 5 kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 58999999999999999999 99999999864
No 401
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=92.48 E-value=0.12 Score=45.98 Aligned_cols=31 Identities=23% Similarity=0.353 Sum_probs=28.5
Q ss_pred cEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (277)
Q Consensus 34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~ 64 (277)
.+.|||+|..|++.|..||+ |++|+-+|...
T Consensus 2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred ceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 47899999999999999999 99999999853
No 402
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=92.40 E-value=0.14 Score=38.91 Aligned_cols=32 Identities=28% Similarity=0.438 Sum_probs=28.8
Q ss_pred CccEEEECCChhhHHHHhhhhC-CCc-EEEEcCC
Q 045695 32 YYDYIIIGGGTAGCPLAATLSQ-NAS-VLLLERG 63 (277)
Q Consensus 32 ~~DviIIGsG~aG~~aA~~La~-g~~-VlvlE~g 63 (277)
...++|||+|-+|-.+++.|.+ |.+ |.|+-|.
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt 45 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRT 45 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 4579999999999999999999 875 9999886
No 403
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=92.34 E-value=0.15 Score=37.35 Aligned_cols=31 Identities=29% Similarity=0.529 Sum_probs=27.7
Q ss_pred EEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695 35 YIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (277)
Q Consensus 35 viIIGsG~aG~~aA~~La~-g~~VlvlE~g~~ 65 (277)
|||||.|..|...|..|.+ +.+|+++|+.+.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~ 32 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPE 32 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcH
Confidence 7999999999999999999 789999999854
No 404
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=92.24 E-value=1.5 Score=44.46 Aligned_cols=32 Identities=19% Similarity=0.334 Sum_probs=27.7
Q ss_pred ccEEEECCChhhHHHHhhhhC--CC-cEEEEcCCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ--NA-SVLLLERGG 64 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~--g~-~VlvlE~g~ 64 (277)
-.|+|||+|..|+=+|..+.+ |. +|.++++..
T Consensus 667 K~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~ 701 (1012)
T TIGR03315 667 KHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT 701 (1012)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccC
Confidence 479999999999999998876 64 799999874
No 405
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=92.18 E-value=0.48 Score=44.01 Aligned_cols=35 Identities=29% Similarity=0.316 Sum_probs=31.7
Q ss_pred cEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCC
Q 045695 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG 68 (277)
Q Consensus 34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~ 68 (277)
+|+|||+|++|+++|+.|++ |++|+|+|+.....+
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG 36 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGG 36 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCc
Confidence 48999999999999999999 999999999876543
No 406
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=92.18 E-value=0.14 Score=44.12 Aligned_cols=35 Identities=23% Similarity=0.301 Sum_probs=31.7
Q ss_pred CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695 31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (277)
Q Consensus 31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~ 65 (277)
..-+|+|||+|..|.-+|+-+.. |.+|.++|....
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~ 202 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNID 202 (371)
T ss_pred CCccEEEECCccccchHHHHHhccCCeeEEEecCHH
Confidence 45689999999999999999998 999999999844
No 407
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=92.09 E-value=0.14 Score=40.38 Aligned_cols=33 Identities=18% Similarity=0.230 Sum_probs=28.4
Q ss_pred CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695 32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (277)
Q Consensus 32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~ 64 (277)
...|+|+|+|.+|..||..|.. |.+|.++|...
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred CeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 4589999999999999999999 99999999864
No 408
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=92.04 E-value=0.15 Score=45.66 Aligned_cols=33 Identities=33% Similarity=0.378 Sum_probs=29.9
Q ss_pred CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695 32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (277)
Q Consensus 32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~ 64 (277)
..+++|||+|.+|..+|..|.. |.+|.++++..
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 4579999999999999999999 99999999863
No 409
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=91.82 E-value=0.67 Score=46.53 Aligned_cols=33 Identities=18% Similarity=0.263 Sum_probs=28.4
Q ss_pred hcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEe
Q 045695 206 YANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRD 242 (277)
Q Consensus 206 ~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~ 242 (277)
.+.+.|+.+.+++.-.+|+.|++| ++.++++..
T Consensus 649 ~A~eEGV~f~~~~~P~~i~~d~~g----~v~~l~~~~ 681 (1028)
T PRK06567 649 YALALGVDFKENMQPLRINVDKYG----HVESVEFEN 681 (1028)
T ss_pred HHHHcCcEEEecCCcEEEEecCCC----eEEEEEEEE
Confidence 466789999999999999988765 999999874
No 410
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=91.75 E-value=0.2 Score=44.26 Aligned_cols=31 Identities=32% Similarity=0.629 Sum_probs=28.9
Q ss_pred cEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (277)
Q Consensus 34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~ 64 (277)
.|.|||+|..|...|..|++ |++|.+++|..
T Consensus 4 kI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~ 35 (341)
T PRK08229 4 RICVLGAGSIGCYLGGRLAAAGADVTLIGRAR 35 (341)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCcEEEEecHH
Confidence 58999999999999999999 99999999864
No 411
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=91.71 E-value=0.21 Score=40.70 Aligned_cols=32 Identities=22% Similarity=0.308 Sum_probs=29.2
Q ss_pred ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~ 64 (277)
..++|+|.|..|..+|..|.+ |.+|++.++..
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~ 61 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADINE 61 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 469999999999999999999 99999998763
No 412
>PRK04148 hypothetical protein; Provisional
Probab=91.64 E-value=0.15 Score=38.58 Aligned_cols=32 Identities=16% Similarity=0.220 Sum_probs=28.6
Q ss_pred ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~ 65 (277)
-.+++||.| .|..+|..|++ |.+|+.+|..+.
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 359999999 88888999999 999999998865
No 413
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.59 E-value=0.18 Score=43.60 Aligned_cols=32 Identities=22% Similarity=0.407 Sum_probs=29.6
Q ss_pred cEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (277)
Q Consensus 34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~ 65 (277)
.|.|||+|..|...|..++. |++|+++|+.+.
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 39 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE 39 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 58899999999999999999 999999998754
No 414
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=91.56 E-value=0.24 Score=40.38 Aligned_cols=35 Identities=20% Similarity=0.238 Sum_probs=31.0
Q ss_pred CccEEEECCChhhHHHHhhhhC-CC-cEEEEcCCCCC
Q 045695 32 YYDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGSP 66 (277)
Q Consensus 32 ~~DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~~~ 66 (277)
...|+|||+|..|+.+|..|++ |. ++.|+|.....
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve 57 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVE 57 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEc
Confidence 5679999999999999999999 97 69999998543
No 415
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.55 E-value=0.19 Score=44.08 Aligned_cols=31 Identities=19% Similarity=0.294 Sum_probs=28.7
Q ss_pred cEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (277)
Q Consensus 34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~ 64 (277)
-|.|||+|..|...|..++. |++|++.|+.+
T Consensus 9 ~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 9 TFAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 48999999999999999999 99999999864
No 416
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=91.45 E-value=0.21 Score=44.84 Aligned_cols=30 Identities=30% Similarity=0.570 Sum_probs=28.6
Q ss_pred cEEEECCChhhHHHHhhhhC-C-CcEEEEcCC
Q 045695 34 DYIIIGGGTAGCPLAATLSQ-N-ASVLLLERG 63 (277)
Q Consensus 34 DviIIGsG~aG~~aA~~La~-g-~~VlvlE~g 63 (277)
+++|||+|..|.++|..|++ + .+|++.+|.
T Consensus 3 ~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs 34 (389)
T COG1748 3 KILVIGAGGVGSVVAHKLAQNGDGEVTIADRS 34 (389)
T ss_pred cEEEECCchhHHHHHHHHHhCCCceEEEEeCC
Confidence 69999999999999999999 7 899999998
No 417
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=91.18 E-value=0.3 Score=38.67 Aligned_cols=33 Identities=30% Similarity=0.415 Sum_probs=29.1
Q ss_pred CCccEEEECCCh-hhHHHHhhhhC-CCcEEEEcCC
Q 045695 31 SYYDYIIIGGGT-AGCPLAATLSQ-NASVLLLERG 63 (277)
Q Consensus 31 ~~~DviIIGsG~-aG~~aA~~La~-g~~VlvlE~g 63 (277)
....++|||+|- +|..+|..|.+ |.+|.++.|.
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 356899999995 69999999999 9999999986
No 418
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=91.04 E-value=0.26 Score=43.64 Aligned_cols=34 Identities=26% Similarity=0.373 Sum_probs=30.8
Q ss_pred CccEEEECCChhhHHHHhhhhC-CC-cEEEEcCCCC
Q 045695 32 YYDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGS 65 (277)
Q Consensus 32 ~~DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~~ 65 (277)
...|+|||+|..|+.+|..|++ |. ++.|+|....
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~V 59 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYV 59 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCcc
Confidence 5689999999999999999999 97 8999999753
No 419
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=91.01 E-value=0.29 Score=43.34 Aligned_cols=35 Identities=20% Similarity=0.318 Sum_probs=31.3
Q ss_pred CccEEEECCChhhHHHHhhhhC-CC-cEEEEcCCCCC
Q 045695 32 YYDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGSP 66 (277)
Q Consensus 32 ~~DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~~~ 66 (277)
...|+|||.|..|+.+|..|++ |. ++.|+|.....
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve 60 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVE 60 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccc
Confidence 4579999999999999999999 96 89999998644
No 420
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=90.96 E-value=0.27 Score=37.20 Aligned_cols=34 Identities=24% Similarity=0.411 Sum_probs=29.6
Q ss_pred ccEEEECCChhhHHHHhhhhC-CC-cEEEEcCCCCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGSP 66 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~~~ 66 (277)
.-|+|||+|..|+.+|..|+. |. ++.|+|.....
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~ 38 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVE 38 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCceeecCCccee
Confidence 468999999999999999999 96 79999998654
No 421
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=90.93 E-value=0.25 Score=42.71 Aligned_cols=32 Identities=16% Similarity=0.305 Sum_probs=29.1
Q ss_pred cEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (277)
Q Consensus 34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~ 65 (277)
.|.|||+|..|...|..|+. |.+|+++|+.+.
T Consensus 5 ~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~ 37 (291)
T PRK06035 5 VIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEE 37 (291)
T ss_pred EEEEECccHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 48899999999999999999 999999998743
No 422
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.84 E-value=0.32 Score=42.07 Aligned_cols=31 Identities=26% Similarity=0.317 Sum_probs=28.8
Q ss_pred cEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (277)
Q Consensus 34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~ 64 (277)
.|.|||+|..|...|..|++ |.+|++.++..
T Consensus 6 kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 6 KVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 58999999999999999999 99999999863
No 423
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=90.77 E-value=0.26 Score=44.79 Aligned_cols=33 Identities=24% Similarity=0.227 Sum_probs=29.7
Q ss_pred ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~ 65 (277)
-.|+|+|.|..|..+|..|.. |.+|+++|+.+.
T Consensus 203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~ 236 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPI 236 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECChh
Confidence 379999999999999999988 999999998743
No 424
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=90.69 E-value=0.27 Score=42.38 Aligned_cols=32 Identities=19% Similarity=0.345 Sum_probs=28.9
Q ss_pred ccEEEECCChhhHHHHhhhhC-CC-cEEEEcCCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGG 64 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~ 64 (277)
..|+|||+|.+|.++|+.|++ |. +|.|++|..
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~ 161 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP 161 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 479999999999999999999 86 799999864
No 425
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=90.67 E-value=0.29 Score=41.75 Aligned_cols=36 Identities=17% Similarity=0.226 Sum_probs=31.7
Q ss_pred CccEEEECCChhhHHHHhhhhC-C-CcEEEEcCCCCCC
Q 045695 32 YYDYIIIGGGTAGCPLAATLSQ-N-ASVLLLERGGSPY 67 (277)
Q Consensus 32 ~~DviIIGsG~aG~~aA~~La~-g-~~VlvlE~g~~~~ 67 (277)
...|+|||.|..|+.+|..|++ | .+++|+|......
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~ 67 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCV 67 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecc
Confidence 4579999999999999999999 9 6899999886543
No 426
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=90.51 E-value=0.27 Score=43.22 Aligned_cols=31 Identities=35% Similarity=0.477 Sum_probs=28.5
Q ss_pred cEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (277)
Q Consensus 34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~ 64 (277)
.+.|||+|..|.+.|..|++ |.+|.++.|..
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence 48899999999999999999 99999999853
No 427
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=90.51 E-value=0.3 Score=42.70 Aligned_cols=32 Identities=22% Similarity=0.387 Sum_probs=28.5
Q ss_pred cEEEECCChhhHHHHhhhhC-C--CcEEEEcCCCC
Q 045695 34 DYIIIGGGTAGCPLAATLSQ-N--ASVLLLERGGS 65 (277)
Q Consensus 34 DviIIGsG~aG~~aA~~La~-g--~~VlvlE~g~~ 65 (277)
.+.|||+|..|+++|+.|++ | ..|+++|+...
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~ 36 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKA 36 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCch
Confidence 58999999999999999999 8 58999998743
No 428
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=90.32 E-value=0.43 Score=36.45 Aligned_cols=33 Identities=18% Similarity=0.381 Sum_probs=29.5
Q ss_pred EEEECCChhhHHHHhhhhC-CC-cEEEEcCCCCCC
Q 045695 35 YIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGSPY 67 (277)
Q Consensus 35 viIIGsG~aG~~aA~~La~-g~-~VlvlE~g~~~~ 67 (277)
|+|||.|..|+.+|..|+. |. ++.|++......
T Consensus 2 VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~ 36 (143)
T cd01483 2 VLLVGLGGLGSEIALNLARSGVGKITLIDFDTVEL 36 (143)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCc
Confidence 7999999999999999999 96 799999886543
No 429
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=90.30 E-value=0.31 Score=42.55 Aligned_cols=30 Identities=27% Similarity=0.429 Sum_probs=27.4
Q ss_pred cEEEECCChhhHHHHhhhhC-CC-cEEEEcCC
Q 045695 34 DYIIIGGGTAGCPLAATLSQ-NA-SVLLLERG 63 (277)
Q Consensus 34 DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g 63 (277)
.|.|||+|..|+..|+.|+. |. +|+++|..
T Consensus 3 KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~ 34 (305)
T TIGR01763 3 KISVIGAGFVGATTAFRLAEKELADLVLLDVV 34 (305)
T ss_pred EEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 48899999999999999999 76 89999984
No 430
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.22 E-value=0.28 Score=42.19 Aligned_cols=31 Identities=23% Similarity=0.362 Sum_probs=28.5
Q ss_pred cEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (277)
Q Consensus 34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~ 64 (277)
.|.|||+|..|...|..|++ |.+|+++|+.+
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~ 36 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISD 36 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCCceEEEeCCH
Confidence 58999999999999999999 99999998653
No 431
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=90.19 E-value=0.27 Score=42.91 Aligned_cols=32 Identities=34% Similarity=0.551 Sum_probs=28.8
Q ss_pred cEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (277)
Q Consensus 34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~ 65 (277)
-+.|+|+|..|+..|+.|++ |.+|+++=|...
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~ 34 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSRR 34 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH
Confidence 47899999999999999999 989999988763
No 432
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=90.03 E-value=0.29 Score=44.62 Aligned_cols=31 Identities=26% Similarity=0.373 Sum_probs=28.8
Q ss_pred cEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (277)
Q Consensus 34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~ 64 (277)
.|.|||.|..|++.|..|++ |++|+++++..
T Consensus 5 kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~ 36 (415)
T PRK11064 5 TISVIGLGYIGLPTAAAFASRQKQVIGVDINQ 36 (415)
T ss_pred EEEEECcchhhHHHHHHHHhCCCEEEEEeCCH
Confidence 58999999999999999999 99999999864
No 433
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=89.99 E-value=0.38 Score=38.28 Aligned_cols=32 Identities=22% Similarity=0.284 Sum_probs=28.9
Q ss_pred EEEECCChhhHHHHhhhhC-CC-cEEEEcCCCCC
Q 045695 35 YIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGSP 66 (277)
Q Consensus 35 viIIGsG~aG~~aA~~La~-g~-~VlvlE~g~~~ 66 (277)
|+|||.|..|+.+|..|++ |. ++.++|.....
T Consensus 2 VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~ 35 (174)
T cd01487 2 VGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVE 35 (174)
T ss_pred EEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEc
Confidence 7999999999999999999 96 69999998644
No 434
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=89.89 E-value=0.34 Score=42.66 Aligned_cols=31 Identities=26% Similarity=0.363 Sum_probs=28.8
Q ss_pred cEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (277)
Q Consensus 34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~ 64 (277)
.|.|||+|..|...|..|++ |++|.+++|..
T Consensus 6 ~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 6 RVAVLGAGAWGTALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred eEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 59999999999999999999 99999999963
No 435
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.88 E-value=0.32 Score=44.66 Aligned_cols=31 Identities=19% Similarity=0.290 Sum_probs=28.6
Q ss_pred cEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (277)
Q Consensus 34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~ 64 (277)
-++|+|+|..|+++|..|++ |.+|++.|+..
T Consensus 7 ~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 7 KVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred EEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 48999999999999999999 99999999764
No 436
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.75 E-value=0.44 Score=41.54 Aligned_cols=31 Identities=32% Similarity=0.524 Sum_probs=28.4
Q ss_pred cEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (277)
Q Consensus 34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~ 64 (277)
.|.|||+|..|...|..|++ |++|+++++..
T Consensus 6 ~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 6 NLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 58999999999999999999 99999998753
No 437
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=89.73 E-value=0.32 Score=44.29 Aligned_cols=31 Identities=32% Similarity=0.410 Sum_probs=28.6
Q ss_pred cEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (277)
Q Consensus 34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~ 64 (277)
.|.|||.|..|+..|..|++ |++|+++++..
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~ 33 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQ 33 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCH
Confidence 48899999999999999999 99999999864
No 438
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=89.71 E-value=0.36 Score=41.78 Aligned_cols=32 Identities=16% Similarity=0.292 Sum_probs=28.2
Q ss_pred ccEEEECCChhhHHHHhhhhC-CCc-EEEEcCCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-NAS-VLLLERGG 64 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-g~~-VlvlE~g~ 64 (277)
--++|+|+|-+|.++|+.|++ |.+ |.|+.|..
T Consensus 127 k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 127 KKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 368999999999999999999 976 99998864
No 439
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=89.53 E-value=0.47 Score=38.69 Aligned_cols=36 Identities=22% Similarity=0.404 Sum_probs=31.8
Q ss_pred CCccEEEECCChhhHHHHhhhhC-CC-cEEEEcCCCCC
Q 045695 31 SYYDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGSP 66 (277)
Q Consensus 31 ~~~DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~~~ 66 (277)
.+..|+|||.|..|+.+|..|+. |. ++.|+|.....
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve 57 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVD 57 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEc
Confidence 35689999999999999999999 96 89999998654
No 440
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=89.53 E-value=0.39 Score=41.98 Aligned_cols=31 Identities=29% Similarity=0.472 Sum_probs=28.8
Q ss_pred cEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (277)
Q Consensus 34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~ 64 (277)
.|.|||+|..|...|..|++ |++|.++++.+
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 58999999999999999999 99999999863
No 441
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=89.42 E-value=0.47 Score=41.36 Aligned_cols=33 Identities=27% Similarity=0.340 Sum_probs=29.9
Q ss_pred ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~ 65 (277)
..|.|||+|..|.+.|..|++ |++|.+..|...
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~ 38 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG 38 (308)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 469999999999999999999 999999998653
No 442
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=89.36 E-value=5.6 Score=36.14 Aligned_cols=61 Identities=21% Similarity=0.299 Sum_probs=41.1
Q ss_pred CCCCeeeCHHHHHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccccHH
Q 045695 192 DQNGQRHTAADLLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQ 271 (277)
Q Consensus 192 ~~~g~~~~~~~~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~tp~ 271 (277)
..++...+... |+.+.+.|+-++.+-.|++|..++. -|... +|.+..+ ++.++|||+ +|+
T Consensus 253 epd~FfvspeD-Lp~~~nGGvAvl~G~kvvkid~~d~--------~V~Ln--DG~~I~Y-------dkcLIATG~--~Pk 312 (659)
T KOG1346|consen 253 EPDGFFVSPED-LPKAVNGGVAVLRGRKVVKIDEEDK--------KVILN--DGTTIGY-------DKCLIATGV--RPK 312 (659)
T ss_pred cCCcceeChhH-CcccccCceEEEeccceEEeecccC--------eEEec--CCcEeeh-------hheeeecCc--Ccc
Confidence 34444444433 4456778999999999999998887 34444 5655553 678889995 554
Q ss_pred H
Q 045695 272 L 272 (277)
Q Consensus 272 l 272 (277)
-
T Consensus 313 ~ 313 (659)
T KOG1346|consen 313 K 313 (659)
T ss_pred c
Confidence 3
No 443
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=89.25 E-value=0.39 Score=39.94 Aligned_cols=33 Identities=27% Similarity=0.503 Sum_probs=29.4
Q ss_pred ccEEEECCChhhHHHHhhhhC-CC---cEEEEcCCCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-NA---SVLLLERGGS 65 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-g~---~VlvlE~g~~ 65 (277)
..++|+|+|.+|..+|..|.+ |. +|.|++|...
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl 62 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGV 62 (226)
T ss_pred CEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCc
Confidence 469999999999999999999 86 5999999853
No 444
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=89.22 E-value=0.3 Score=42.93 Aligned_cols=33 Identities=33% Similarity=0.425 Sum_probs=29.8
Q ss_pred ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~ 65 (277)
.||.|||+|..|.-||+-||- =..|.|||=.+.
T Consensus 355 K~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~e 388 (520)
T COG3634 355 KRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPE 388 (520)
T ss_pred ceEEEECCCcchHHHHHhHHhhhheeeeeecchh
Confidence 599999999999999999997 678999998754
No 445
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=89.14 E-value=0.35 Score=45.12 Aligned_cols=34 Identities=21% Similarity=0.269 Sum_probs=29.8
Q ss_pred CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695 31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (277)
Q Consensus 31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~ 64 (277)
..-.|+|+|+|++|+.++..+.. |.+|.++|..+
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~ 198 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP 198 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 35689999999999999888888 99999998864
No 446
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=89.12 E-value=0.34 Score=37.93 Aligned_cols=32 Identities=28% Similarity=0.330 Sum_probs=25.9
Q ss_pred cEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (277)
Q Consensus 34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~ 65 (277)
.++|+|-|..|-..|..|.. |.+|.|.|..+.
T Consensus 25 ~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi 57 (162)
T PF00670_consen 25 RVVVIGYGKVGKGIARALRGLGARVTVTEIDPI 57 (162)
T ss_dssp EEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHH
T ss_pred EEEEeCCCcccHHHHHHHhhCCCEEEEEECChH
Confidence 69999999999999999998 999999999854
No 447
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=89.06 E-value=0.57 Score=39.34 Aligned_cols=36 Identities=22% Similarity=0.370 Sum_probs=31.7
Q ss_pred CccEEEECCChhhHHHHhhhhC-CC-cEEEEcCCCCCC
Q 045695 32 YYDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGSPY 67 (277)
Q Consensus 32 ~~DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~~~~ 67 (277)
...|+|||.|..|+.+|..|++ |. ++.++|......
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~ 61 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSL 61 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccc
Confidence 5689999999999999999999 84 899999886654
No 448
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=88.73 E-value=0.51 Score=40.86 Aligned_cols=31 Identities=23% Similarity=0.372 Sum_probs=28.7
Q ss_pred cEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (277)
Q Consensus 34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~ 64 (277)
.|.|||+|..|...|..|+. |.+|.+.|+..
T Consensus 6 ~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 37 (295)
T PLN02545 6 KVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP 37 (295)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 48999999999999999999 99999999864
No 449
>PLN02612 phytoene desaturase
Probab=88.73 E-value=0.94 Score=43.13 Aligned_cols=51 Identities=10% Similarity=0.199 Sum_probs=37.7
Q ss_pred HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCc
Q 045695 203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGA 266 (277)
Q Consensus 203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~ 266 (277)
+.+..++.|.+|+++++|++|..++++ ++++|++. +|+. +. ++.||+|+..
T Consensus 314 l~~~l~~~G~~I~l~~~V~~I~~~~~g----~v~~v~~~--~G~~--~~-----ad~VI~a~p~ 364 (567)
T PLN02612 314 IVDHFQSLGGEVRLNSRIKKIELNDDG----TVKHFLLT--NGSV--VE-----GDVYVSATPV 364 (567)
T ss_pred HHHHHHhcCCEEEeCCeeeEEEECCCC----cEEEEEEC--CCcE--EE-----CCEEEECCCH
Confidence 444445579999999999999997664 77777775 4543 33 6899998864
No 450
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=88.73 E-value=0.52 Score=41.11 Aligned_cols=32 Identities=25% Similarity=0.514 Sum_probs=28.3
Q ss_pred cEEEECCChhhHHHHhhhhC-C--CcEEEEcCCCC
Q 045695 34 DYIIIGGGTAGCPLAATLSQ-N--ASVLLLERGGS 65 (277)
Q Consensus 34 DviIIGsG~aG~~aA~~La~-g--~~VlvlE~g~~ 65 (277)
.|.|||+|..|.++|+.|++ | .+|.++++...
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~ 36 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEE 36 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence 48999999999999999999 8 47999999654
No 451
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=88.72 E-value=0.49 Score=42.88 Aligned_cols=34 Identities=21% Similarity=0.160 Sum_probs=30.4
Q ss_pred CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695 32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (277)
Q Consensus 32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~ 65 (277)
.-.|+|||.|..|..+|..|.. |.+|+++|+.+.
T Consensus 195 Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~ 229 (406)
T TIGR00936 195 GKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPI 229 (406)
T ss_pred cCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChh
Confidence 3479999999999999999998 999999998753
No 452
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=88.54 E-value=0.56 Score=39.45 Aligned_cols=36 Identities=17% Similarity=0.361 Sum_probs=30.6
Q ss_pred CCccEEEECCChhhHHHHhhhhC-CC-----------cEEEEcCCCCC
Q 045695 31 SYYDYIIIGGGTAGCPLAATLSQ-NA-----------SVLLLERGGSP 66 (277)
Q Consensus 31 ~~~DviIIGsG~aG~~aA~~La~-g~-----------~VlvlE~g~~~ 66 (277)
....|+|||+|..|+.++..|++ |. ++.|+|.....
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve 57 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVS 57 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEc
Confidence 45689999999999999999997 62 88999987654
No 453
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=88.47 E-value=0.47 Score=40.98 Aligned_cols=33 Identities=27% Similarity=0.403 Sum_probs=30.0
Q ss_pred CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695 32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (277)
Q Consensus 32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~ 64 (277)
...++|||.|..|..+|..|.. |.+|.+.+|..
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~ 184 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSALGARVFVGARSS 184 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3479999999999999999999 99999999874
No 454
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=88.35 E-value=0.59 Score=39.38 Aligned_cols=36 Identities=17% Similarity=0.345 Sum_probs=31.6
Q ss_pred CCccEEEECCChhhHHHHhhhhC-CC-cEEEEcCCCCC
Q 045695 31 SYYDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGSP 66 (277)
Q Consensus 31 ~~~DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~~~ 66 (277)
....|+|||.|..|+.+|..|+. |. ++.|+|.....
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve 68 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVS 68 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEC
Confidence 35789999999999999999999 85 89999988554
No 455
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=88.24 E-value=0.46 Score=43.98 Aligned_cols=33 Identities=15% Similarity=0.312 Sum_probs=30.3
Q ss_pred ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~ 65 (277)
-.|+|||+|..|+=.|..|++ +.+|.++.|+..
T Consensus 205 k~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~~ 238 (461)
T PLN02172 205 EVVVVIGNFASGADISRDIAKVAKEVHIASRASE 238 (461)
T ss_pred CEEEEECCCcCHHHHHHHHHHhCCeEEEEEeecc
Confidence 479999999999999999999 999999998753
No 456
>PRK08328 hypothetical protein; Provisional
Probab=88.23 E-value=0.62 Score=38.86 Aligned_cols=35 Identities=23% Similarity=0.406 Sum_probs=30.3
Q ss_pred CccEEEECCChhhHHHHhhhhC-CC-cEEEEcCCCCC
Q 045695 32 YYDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGSP 66 (277)
Q Consensus 32 ~~DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~~~ 66 (277)
...|+|||.|..|+.+|..|+. |. ++.|+|.....
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve 63 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPE 63 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccC
Confidence 5679999999999999999999 95 79999877544
No 457
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=87.98 E-value=0.66 Score=38.18 Aligned_cols=35 Identities=20% Similarity=0.242 Sum_probs=30.9
Q ss_pred CccEEEECCChhhHHHHhhhhC-CC-cEEEEcCCCCC
Q 045695 32 YYDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGSP 66 (277)
Q Consensus 32 ~~DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~~~ 66 (277)
...|+|||.|..|+.+|..|++ |. ++.|+|.....
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve 64 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVE 64 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEec
Confidence 5679999999999999999999 96 69999998543
No 458
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=87.78 E-value=0.62 Score=42.49 Aligned_cols=33 Identities=24% Similarity=0.221 Sum_probs=29.9
Q ss_pred ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~ 65 (277)
-.|+|||.|..|..+|..|.. |.+|++.|+.+.
T Consensus 213 k~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ 246 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPI 246 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCch
Confidence 369999999999999999998 999999998754
No 459
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=87.73 E-value=0.59 Score=43.36 Aligned_cols=30 Identities=23% Similarity=0.396 Sum_probs=27.0
Q ss_pred cEEEECCChhhHHHHhhhhC-C--CcEEEEcCC
Q 045695 34 DYIIIGGGTAGCPLAATLSQ-N--ASVLLLERG 63 (277)
Q Consensus 34 DviIIGsG~aG~~aA~~La~-g--~~VlvlE~g 63 (277)
.+.|||+|..|+++|..||+ | .+|+.+|..
T Consensus 3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~ 35 (473)
T PLN02353 3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDIS 35 (473)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECC
Confidence 58999999999999999998 6 779999875
No 460
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=87.64 E-value=0.62 Score=38.44 Aligned_cols=31 Identities=23% Similarity=0.385 Sum_probs=27.7
Q ss_pred cEEEEC-CChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695 34 DYIIIG-GGTAGCPLAATLSQ-NASVLLLERGG 64 (277)
Q Consensus 34 DviIIG-sG~aG~~aA~~La~-g~~VlvlE~g~ 64 (277)
.+.||| +|..|.+.|..|++ |++|.+..|..
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~ 34 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL 34 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence 488997 79999999999999 99999998764
No 461
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=87.58 E-value=0.54 Score=43.18 Aligned_cols=31 Identities=35% Similarity=0.597 Sum_probs=28.8
Q ss_pred cEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (277)
Q Consensus 34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~ 64 (277)
.|+|||+|..|..+|..|.+ |.+|+++|+.+
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~ 33 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDE 33 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEECCH
Confidence 58999999999999999999 99999999854
No 462
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=87.52 E-value=0.59 Score=44.07 Aligned_cols=31 Identities=32% Similarity=0.494 Sum_probs=28.4
Q ss_pred ccEEEECCChhhHHHHhhhhC-CCcEEEEcCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERG 63 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g 63 (277)
-.++|+|+|.+|.++|+.|++ |.+|+++.|.
T Consensus 380 k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~ 411 (529)
T PLN02520 380 KLFVVIGAGGAGKALAYGAKEKGARVVIANRT 411 (529)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEcCC
Confidence 368999999999999999999 9999999875
No 463
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=87.40 E-value=0.65 Score=38.63 Aligned_cols=35 Identities=20% Similarity=0.339 Sum_probs=30.9
Q ss_pred CccEEEECCChhhHHHHhhhhC-CC-cEEEEcCCCCC
Q 045695 32 YYDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGSP 66 (277)
Q Consensus 32 ~~DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~~~ 66 (277)
...|+|||.|..|+.+|..|+. |. ++.|+|.....
T Consensus 21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve 57 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVE 57 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEc
Confidence 5689999999999999999999 95 89999887544
No 464
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=87.27 E-value=0.64 Score=40.35 Aligned_cols=33 Identities=30% Similarity=0.380 Sum_probs=30.2
Q ss_pred CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695 32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (277)
Q Consensus 32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~ 64 (277)
...++|||.|.+|..+|..|.. |.+|.+.+|..
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 4579999999999999999999 99999998874
No 465
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.25 E-value=0.66 Score=42.88 Aligned_cols=31 Identities=23% Similarity=0.400 Sum_probs=28.9
Q ss_pred cEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (277)
Q Consensus 34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~ 64 (277)
.+.|+|.|.+|+++|..|.+ |.+|.+.|+..
T Consensus 16 ~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 47 (458)
T PRK01710 16 KVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS 47 (458)
T ss_pred eEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence 59999999999999999999 99999999875
No 466
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=87.11 E-value=0.5 Score=35.99 Aligned_cols=32 Identities=19% Similarity=0.263 Sum_probs=27.0
Q ss_pred EEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695 35 YIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (277)
Q Consensus 35 viIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~ 66 (277)
++|+|+|..+...|.-+.. |.+|+|+|-.+..
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e~ 33 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPER 33 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CCC
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCccc
Confidence 5899999999999999998 9999999988653
No 467
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=87.02 E-value=0.7 Score=39.59 Aligned_cols=31 Identities=19% Similarity=0.219 Sum_probs=28.2
Q ss_pred cEEEECCChhhHHHHhhhhC-CC-cEEEEcCCC
Q 045695 34 DYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGG 64 (277)
Q Consensus 34 DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~ 64 (277)
.++|+|+|-++.++++.|++ |. +|.|+.|..
T Consensus 124 ~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~ 156 (272)
T PRK12550 124 VVALRGSGGMAKAVAAALRDAGFTDGTIVARNE 156 (272)
T ss_pred eEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence 69999999999999999999 85 699999874
No 468
>PLN02494 adenosylhomocysteinase
Probab=86.98 E-value=0.73 Score=42.46 Aligned_cols=33 Identities=27% Similarity=0.245 Sum_probs=30.2
Q ss_pred ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~ 65 (277)
-.++|||.|..|..+|..|.. |.+|+++|+.+.
T Consensus 255 KtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~ 288 (477)
T PLN02494 255 KVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPI 288 (477)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 479999999999999999988 999999998754
No 469
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=86.86 E-value=0.76 Score=38.45 Aligned_cols=32 Identities=19% Similarity=0.470 Sum_probs=28.7
Q ss_pred EEEECCChhhHHHHhhhhC-CC-cEEEEcCCCCC
Q 045695 35 YIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGSP 66 (277)
Q Consensus 35 viIIGsG~aG~~aA~~La~-g~-~VlvlE~g~~~ 66 (277)
|+|||+|..|+.++..|+. |. ++.|+|.....
T Consensus 2 VlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve 35 (234)
T cd01484 2 VLLVGAGGIGCELLKNLALMGFGQIHVIDMDTID 35 (234)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEc
Confidence 7999999999999999999 84 89999988654
No 470
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=86.84 E-value=0.83 Score=39.58 Aligned_cols=34 Identities=26% Similarity=0.653 Sum_probs=29.9
Q ss_pred EEEECCChhhHHHHhhhhC-CC-cEEEEcCCCCCCC
Q 045695 35 YIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGSPYG 68 (277)
Q Consensus 35 viIIGsG~aG~~aA~~La~-g~-~VlvlE~g~~~~~ 68 (277)
|+|||+|.-|+.+|..|+. |. +++++|.+.....
T Consensus 2 VLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~Ve~s 37 (307)
T cd01486 2 CLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSYS 37 (307)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCeEEEECCCEeccc
Confidence 8999999999999999999 95 8999998865543
No 471
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=86.82 E-value=0.85 Score=37.66 Aligned_cols=36 Identities=19% Similarity=0.360 Sum_probs=31.8
Q ss_pred CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695 30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (277)
Q Consensus 30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~ 65 (277)
...-.|-|||+|..|.-.|.-.+. |++|.|+++...
T Consensus 9 ~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~ 45 (298)
T KOG2304|consen 9 AEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANED 45 (298)
T ss_pred ccccceEEEcccccchhHHHHHHhcCCceEEecCCHH
Confidence 345579999999999999999999 999999999754
No 472
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=86.74 E-value=0.85 Score=36.76 Aligned_cols=32 Identities=31% Similarity=0.503 Sum_probs=28.4
Q ss_pred CccEEEECC-ChhhHHHHhhhhC-CCcEEEEcCC
Q 045695 32 YYDYIIIGG-GTAGCPLAATLSQ-NASVLLLERG 63 (277)
Q Consensus 32 ~~DviIIGs-G~aG~~aA~~La~-g~~VlvlE~g 63 (277)
...++|+|+ |..|..+|..|++ |.+|.++.|.
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~ 61 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD 61 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 347999996 9999999999999 9999999876
No 473
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=86.71 E-value=0.74 Score=39.70 Aligned_cols=32 Identities=16% Similarity=0.264 Sum_probs=28.1
Q ss_pred ccEEEECCChhhHHHHhhhhC-CC-cEEEEcCCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGG 64 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~ 64 (277)
..++|+|+|-++-++++.|++ |. +|.|+.|..
T Consensus 128 k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~ 161 (283)
T PRK14027 128 DSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDT 161 (283)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence 368999999999999999999 85 799998863
No 474
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=86.61 E-value=0.81 Score=42.14 Aligned_cols=34 Identities=29% Similarity=0.465 Sum_probs=31.6
Q ss_pred ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~ 66 (277)
-+|+|||+|.+|.-.|-+|++ |.+|.++=|.+..
T Consensus 176 KrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~ 210 (443)
T COG2072 176 KRVLVIGAGASAVDIAPELAEVGASVTLSQRSPPH 210 (443)
T ss_pred CeEEEECCCccHHHHHHHHHhcCCeeEEEecCCCc
Confidence 589999999999999999999 9999999998764
No 475
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=86.59 E-value=0.74 Score=43.10 Aligned_cols=31 Identities=26% Similarity=0.435 Sum_probs=28.8
Q ss_pred cEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (277)
Q Consensus 34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~ 64 (277)
.|-|||+|..|...|..|++ |++|.|.|+..
T Consensus 7 kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~ 38 (503)
T TIGR02279 7 TVAVIGAGAMGAGIAQVAASAGHQVLLYDIRA 38 (503)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 48999999999999999999 99999999874
No 476
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=86.55 E-value=0.73 Score=43.99 Aligned_cols=39 Identities=28% Similarity=0.650 Sum_probs=33.3
Q ss_pred CccEEEECCChhhHHHHhhhhC-CC-cEEEEcCCCCCCCCC
Q 045695 32 YYDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGSPYGNP 70 (277)
Q Consensus 32 ~~DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~~~~~~~ 70 (277)
..-|+|||+|.-|+.+|..|+. |. +++++|.+.....+.
T Consensus 338 ~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~Ve~SNL 378 (664)
T TIGR01381 338 QLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGKVSYSNP 378 (664)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEECCCcc
Confidence 5689999999999999999999 95 799999987654433
No 477
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=86.52 E-value=0.76 Score=39.27 Aligned_cols=32 Identities=28% Similarity=0.422 Sum_probs=28.8
Q ss_pred ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~ 64 (277)
-.++|+|+|.+|.++|+.|++ |.+|.|+.|..
T Consensus 118 k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~ 150 (270)
T TIGR00507 118 QRVLIIGAGGAARAVALPLLKADCNVIIANRTV 150 (270)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 369999999999999999999 99999998763
No 478
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=86.49 E-value=0.79 Score=43.51 Aligned_cols=34 Identities=18% Similarity=0.367 Sum_probs=31.1
Q ss_pred CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695 32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (277)
Q Consensus 32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~ 65 (277)
+-.+||+|.|..|-.+|..|.+ |++|+++|+.+.
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~ 451 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRT 451 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCCCCEEEEECCHH
Confidence 4679999999999999999999 999999999854
No 479
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.49 E-value=0.82 Score=42.03 Aligned_cols=32 Identities=22% Similarity=0.292 Sum_probs=29.3
Q ss_pred cEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (277)
Q Consensus 34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~ 65 (277)
.++|+|.|.+|+++|..|++ |.+|++.|....
T Consensus 7 ~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~ 39 (445)
T PRK04308 7 KILVAGLGGTGISMIAYLRKNGAEVAAYDAELK 39 (445)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 59999999999999999999 999999997654
No 480
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=86.46 E-value=0.72 Score=40.07 Aligned_cols=31 Identities=35% Similarity=0.489 Sum_probs=27.4
Q ss_pred EEEECCChhhHHHHhhhhC-CC-cEEEEcCCCC
Q 045695 35 YIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGS 65 (277)
Q Consensus 35 viIIGsG~aG~~aA~~La~-g~-~VlvlE~g~~ 65 (277)
|.|||+|..|..+|..|+. ++ +|+++|....
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~ 33 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEG 33 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCc
Confidence 4799999999999999997 76 9999999743
No 481
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=86.42 E-value=0.73 Score=45.11 Aligned_cols=33 Identities=15% Similarity=0.273 Sum_probs=29.9
Q ss_pred ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~ 65 (277)
--|.|||+|..|...|..++. |++|+++|....
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~ 347 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQK 347 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHH
Confidence 359999999999999999999 999999998743
No 482
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=86.36 E-value=0.7 Score=39.69 Aligned_cols=31 Identities=26% Similarity=0.285 Sum_probs=28.3
Q ss_pred cEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (277)
Q Consensus 34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~ 64 (277)
.|.|||.|..|.+.|..|.+ |.+|+++++..
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~ 33 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE 33 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence 47899999999999999999 99999999863
No 483
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=86.34 E-value=0.83 Score=41.27 Aligned_cols=31 Identities=26% Similarity=0.263 Sum_probs=27.3
Q ss_pred cEEEECCChhhHHHHhhhhCCCcEEEEcCCC
Q 045695 34 DYIIIGGGTAGCPLAATLSQNASVLLLERGG 64 (277)
Q Consensus 34 DviIIGsG~aG~~aA~~La~g~~VlvlE~g~ 64 (277)
.|.|||.|..|+..|..++.|++|+++|+..
T Consensus 2 kI~VIGlGyvGl~~A~~lA~G~~VigvD~d~ 32 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQNHEVVALDILP 32 (388)
T ss_pred EEEEECCCHHHHHHHHHHHhCCcEEEEECCH
Confidence 3789999999999997777799999999863
No 484
>PRK07233 hypothetical protein; Provisional
Probab=86.25 E-value=1.2 Score=40.40 Aligned_cols=56 Identities=21% Similarity=0.189 Sum_probs=39.8
Q ss_pred HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccccHHHH
Q 045695 203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLL 273 (277)
Q Consensus 203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~tp~lL 273 (277)
+.+.+++.|++|+++++|.+|..+++ +++++.. +++ ++. ++.||+|+.....+.+|
T Consensus 204 l~~~l~~~g~~v~~~~~V~~i~~~~~-----~~~~~~~---~~~--~~~-----ad~vI~a~p~~~~~~ll 259 (434)
T PRK07233 204 LAEAIEARGGEIRLGTPVTSVVIDGG-----GVTGVEV---DGE--EED-----FDAVISTAPPPILARLV 259 (434)
T ss_pred HHHHHHhcCceEEeCCCeeEEEEcCC-----ceEEEEe---CCc--eEE-----CCEEEECCCHHHHHhhc
Confidence 55566667899999999999998776 5655542 333 343 58999999876555543
No 485
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=86.19 E-value=0.77 Score=44.94 Aligned_cols=32 Identities=13% Similarity=0.273 Sum_probs=29.5
Q ss_pred ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~ 64 (277)
-.|.|||+|..|...|..++. |++|+++|...
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~ 346 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQ 346 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCH
Confidence 359999999999999999999 99999999864
No 486
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=86.17 E-value=0.78 Score=39.40 Aligned_cols=32 Identities=22% Similarity=0.349 Sum_probs=29.0
Q ss_pred ccEEEECCChhhHHHHhhhhC-C-CcEEEEcCCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-N-ASVLLLERGG 64 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-g-~~VlvlE~g~ 64 (277)
..++|+|+|.+|.+++..|++ | .+|.|+.|..
T Consensus 124 k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~ 157 (278)
T PRK00258 124 KRILILGAGGAARAVILPLLDLGVAEITIVNRTV 157 (278)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 469999999999999999999 9 7999998864
No 487
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=86.08 E-value=0.81 Score=42.72 Aligned_cols=34 Identities=21% Similarity=0.272 Sum_probs=30.2
Q ss_pred CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695 32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (277)
Q Consensus 32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~ 65 (277)
...|+|+|+|.+|+.++..+.. |.+|.++|+...
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~ 198 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPE 198 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 4689999999999999999888 999999998753
No 488
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=85.94 E-value=0.86 Score=37.05 Aligned_cols=35 Identities=23% Similarity=0.363 Sum_probs=30.7
Q ss_pred CccEEEECCChhhHHHHhhhhC-CC-cEEEEcCCCCC
Q 045695 32 YYDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGSP 66 (277)
Q Consensus 32 ~~DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~~~ 66 (277)
+..|+|||.|..|+.+|..|+. |. ++.|+|.....
T Consensus 19 ~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ve 55 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVS 55 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcCC
Confidence 5689999999999999999999 95 69999887543
No 489
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=85.91 E-value=0.93 Score=42.40 Aligned_cols=31 Identities=26% Similarity=0.319 Sum_probs=28.5
Q ss_pred cEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (277)
Q Consensus 34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~ 64 (277)
.|-|||+|..|...|..|+. |++|+|.++.+
T Consensus 6 kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~ 37 (495)
T PRK07531 6 KAACIGGGVIGGGWAARFLLAGIDVAVFDPHP 37 (495)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 58899999999999999999 99999998753
No 490
>PRK08017 oxidoreductase; Provisional
Probab=85.90 E-value=0.91 Score=37.92 Aligned_cols=31 Identities=26% Similarity=0.225 Sum_probs=28.0
Q ss_pred cEEEECC-ChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695 34 DYIIIGG-GTAGCPLAATLSQ-NASVLLLERGG 64 (277)
Q Consensus 34 DviIIGs-G~aG~~aA~~La~-g~~VlvlE~g~ 64 (277)
.++|+|+ |..|..+|..|++ |.+|+++.|..
T Consensus 4 ~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~ 36 (256)
T PRK08017 4 SVLITGCSSGIGLEAALELKRRGYRVLAACRKP 36 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4899998 9999999999999 99999998864
No 491
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=85.70 E-value=0.97 Score=37.46 Aligned_cols=32 Identities=28% Similarity=0.415 Sum_probs=27.7
Q ss_pred CccEEEECCChhhHHHHhhhhC-CCcEEEEcCC
Q 045695 32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERG 63 (277)
Q Consensus 32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g 63 (277)
...|+|||||..++-=+..|.+ |.+|+|+-..
T Consensus 25 ~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~ 57 (223)
T PRK05562 25 KIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKK 57 (223)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCC
Confidence 3469999999999998999999 9999999543
No 492
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=85.67 E-value=1.3 Score=39.03 Aligned_cols=33 Identities=24% Similarity=0.326 Sum_probs=29.4
Q ss_pred ccEEEECCChhhHHHHhhhhC-CC-cEEEEcCCCC
Q 045695 33 YDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGS 65 (277)
Q Consensus 33 ~DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~~ 65 (277)
..|.|||+|..|...|+.|+. |+ +|+|+|..+.
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~ 41 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN 41 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence 479999999999999999988 85 8999998755
No 493
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=85.26 E-value=0.99 Score=39.28 Aligned_cols=31 Identities=26% Similarity=0.412 Sum_probs=28.8
Q ss_pred cEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64 (277)
Q Consensus 34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~ 64 (277)
-|-|||+|..|.-.|..+|. |++|++.|...
T Consensus 5 kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~ 36 (307)
T COG1250 5 KVAVIGAGVMGAGIAAVFALAGYDVVLKDISP 36 (307)
T ss_pred EEEEEcccchhHHHHHHHhhcCCceEEEeCCH
Confidence 58899999999999999999 89999999973
No 494
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=85.22 E-value=0.96 Score=39.10 Aligned_cols=32 Identities=22% Similarity=0.489 Sum_probs=28.3
Q ss_pred EEEECCChhhHHHHhhhhC-CC-cEEEEcCCCCC
Q 045695 35 YIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGSP 66 (277)
Q Consensus 35 viIIGsG~aG~~aA~~La~-g~-~VlvlE~g~~~ 66 (277)
|+|||+|..|+.++..|+. |. ++.|+|-....
T Consensus 2 VlVVGaGGlG~eilknLal~Gvg~I~IvD~D~Ve 35 (291)
T cd01488 2 ILVIGAGGLGCELLKNLALSGFRNIHVIDMDTID 35 (291)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCeEEEECCCEec
Confidence 7999999999999999999 84 79999887543
No 495
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=85.20 E-value=0.96 Score=42.41 Aligned_cols=32 Identities=28% Similarity=0.484 Sum_probs=29.0
Q ss_pred cEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 65 (277)
Q Consensus 34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~ 65 (277)
-|-|||+|..|...|..|+. |++|.|.|+...
T Consensus 9 ~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e 41 (507)
T PRK08268 9 TVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG 41 (507)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 48899999999999999999 999999998643
No 496
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.20 E-value=0.96 Score=42.21 Aligned_cols=30 Identities=20% Similarity=0.392 Sum_probs=27.6
Q ss_pred cEEEECCChhhHHHHhhhhC-CCcEEEEcCC
Q 045695 34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERG 63 (277)
Q Consensus 34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g 63 (277)
.|+|+|.|..|++++..|.. |.+|++.|+.
T Consensus 14 ~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~ 44 (488)
T PRK03369 14 PVLVAGAGVTGRAVLAALTRFGARPTVCDDD 44 (488)
T ss_pred eEEEEcCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 59999999999999988888 9999999965
No 497
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=85.10 E-value=2.7 Score=40.72 Aligned_cols=56 Identities=20% Similarity=0.360 Sum_probs=39.2
Q ss_pred hcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccccHHHHhcc
Q 045695 206 YANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLS 276 (277)
Q Consensus 206 ~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~tp~lLl~S 276 (277)
..++.|++++++...++|.- .+ ++.+|++.| |... .++-||+|+|---...+-..+
T Consensus 196 ~le~~Gi~~~l~~~t~ei~g-~~-----~~~~vr~~D--G~~i-------~ad~VV~a~GIrPn~ela~~a 251 (793)
T COG1251 196 KLEDLGIKVLLEKNTEEIVG-ED-----KVEGVRFAD--GTEI-------PADLVVMAVGIRPNDELAKEA 251 (793)
T ss_pred HHHhhcceeecccchhhhhc-Cc-----ceeeEeecC--CCcc-------cceeEEEecccccccHhHHhc
Confidence 45667889999888888876 33 888999985 4332 368899999975544444333
No 498
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=85.00 E-value=0.95 Score=39.01 Aligned_cols=33 Identities=15% Similarity=0.333 Sum_probs=28.7
Q ss_pred CccEEEECCChhhHHHHhhhhC-CC-cEEEEcCCC
Q 045695 32 YYDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGG 64 (277)
Q Consensus 32 ~~DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~ 64 (277)
...++|||+|-++-++++.|++ |. +|.|+.|..
T Consensus 125 ~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~ 159 (282)
T TIGR01809 125 GFRGLVIGAGGTSRAAVYALASLGVTDITVINRNP 159 (282)
T ss_pred CceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCH
Confidence 3469999999999999999999 85 799998863
No 499
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=84.94 E-value=0.95 Score=41.38 Aligned_cols=32 Identities=16% Similarity=0.454 Sum_probs=28.9
Q ss_pred EEEECCChhhHHHHhhhhC-CC------cEEEEcCCCCC
Q 045695 35 YIIIGGGTAGCPLAATLSQ-NA------SVLLLERGGSP 66 (277)
Q Consensus 35 viIIGsG~aG~~aA~~La~-g~------~VlvlE~g~~~ 66 (277)
|+|||+|..|+-++..|+. |. ++.|+|.....
T Consensus 2 VlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie 40 (435)
T cd01490 2 VFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIE 40 (435)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCcc
Confidence 7999999999999999999 87 89999987654
No 500
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=84.93 E-value=1 Score=36.63 Aligned_cols=35 Identities=20% Similarity=0.241 Sum_probs=30.5
Q ss_pred CccEEEECCChhhHHHHhhhhC-CC-cEEEEcCCCCC
Q 045695 32 YYDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGSP 66 (277)
Q Consensus 32 ~~DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~~~ 66 (277)
..-|+|||.|..|+.+|..|+. |. ++.++|-....
T Consensus 21 ~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve 57 (197)
T cd01492 21 SARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVT 57 (197)
T ss_pred hCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCccc
Confidence 5679999999999999999999 96 69999887543
Done!