BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045699
         (266 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3PFI|A Chain A, 2.7 Angstrom Resolution Crystal Structure Of A Probable
           Holliday Junction Dna Helicase (Ruvb) From Campylobacter
           Jejuni Subsp. Jejuni Nctc 11168 In Complex With
           Adenosine-5'-Diphosphate
 pdb|3PFI|B Chain B, 2.7 Angstrom Resolution Crystal Structure Of A Probable
           Holliday Junction Dna Helicase (Ruvb) From Campylobacter
           Jejuni Subsp. Jejuni Nctc 11168 In Complex With
           Adenosine-5'-Diphosphate
          Length = 338

 Score = 32.7 bits (73), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 18/113 (15%)

Query: 123 LEEGKFDEVSFCT-RPEGILLMCSEGYEAFESRKSILNDALDALSNPN--VDVIGLCGVG 179
           +E+  FDE    + RP        +GY   ES K  LN  + A    N  +D I   G  
Sbjct: 10  IEKYSFDETYETSLRPSNF-----DGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPA 64

Query: 180 GIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNICEG 232
           G+GKTTLA I+          +    ++ +  P +++  GD+A  L+ N+ EG
Sbjct: 65  GLGKTTLANIIS--------YEXSANIKTTAAPXIEK-SGDLAAILT-NLSEG 107


>pdb|1ZX1|A Chain A, Human Quinone Oxidoreductase 2 (Nqo2) In Complex With The
           Cytostatic Prodrug Cb1954
 pdb|1ZX1|B Chain B, Human Quinone Oxidoreductase 2 (Nqo2) In Complex With The
           Cytostatic Prodrug Cb1954
 pdb|2QWX|A Chain A, Crystal Structure Of Quinone Reductase Ii
 pdb|2QWX|B Chain B, Crystal Structure Of Quinone Reductase Ii
 pdb|3G5M|A Chain A, Synthesis Of Casimiroin And Optimization Of Its Quinone
           Reductase 2 And Aromatase Inhibitory Activity
 pdb|3G5M|B Chain B, Synthesis Of Casimiroin And Optimization Of Its Quinone
           Reductase 2 And Aromatase Inhibitory Activity
 pdb|3GAM|A Chain A, Synthesis Of Casimiroin And Optimization Of Its Quinone
           Reductase 2 And Aromatase Inhibitory Activity
 pdb|3GAM|B Chain B, Synthesis Of Casimiroin And Optimization Of Its Quinone
           Reductase 2 And Aromatase Inhibitory Activity
 pdb|3OVM|A Chain A, X-Ray Structural Study Of Quinone Reductase Ii Inhibition
           By Compounds With Micromolar To Nanomolar Range Ic50
           Values
 pdb|3OVM|B Chain B, X-Ray Structural Study Of Quinone Reductase Ii Inhibition
           By Compounds With Micromolar To Nanomolar Range Ic50
           Values
 pdb|3OWH|A Chain A, X-Ray Structural Study Of Quinone Reductase Ii Inhibition
           By Compounds With Micromolar To Nanomolar Range Ic50
           Values
 pdb|3OWH|B Chain B, X-Ray Structural Study Of Quinone Reductase Ii Inhibition
           By Compounds With Micromolar To Nanomolar Range Ic50
           Values
 pdb|3OWX|A Chain A, X-Ray Structural Study Of Quinone Reductase Ii Inhibition
           By Compounds With Micromolar To Nanomolar Range Ic50
           Values
 pdb|3OWX|B Chain B, X-Ray Structural Study Of Quinone Reductase Ii Inhibition
           By Compounds With Micromolar To Nanomolar Range Ic50
           Values
 pdb|3OX1|A Chain A, X-Ray Structural Study Of Quinone Reductase Ii Inhibition
           By Compounds With Micromolar To Nanomolar Range Ic50
           Values
 pdb|3OX1|B Chain B, X-Ray Structural Study Of Quinone Reductase Ii Inhibition
           By Compounds With Micromolar To Nanomolar Range Ic50
           Values
 pdb|3OX2|A Chain A, X-Ray Structural Study Of Quinone Reductase Ii Inhibition
           By Compounds With Micromolar To Nanomolar Range Ic50
           Values
 pdb|3OX2|B Chain B, X-Ray Structural Study Of Quinone Reductase Ii Inhibition
           By Compounds With Micromolar To Nanomolar Range Ic50
           Values
 pdb|3OX3|A Chain A, X-Ray Structural Study Of Quinone Reductase Ii Inhibition
           By Compounds With Micromolar To Nanomolar Range Ic50
           Values
 pdb|3OX3|B Chain B, X-Ray Structural Study Of Quinone Reductase Ii Inhibition
           By Compounds With Micromolar To Nanomolar Range Ic50
           Values
          Length = 231

 Score = 31.6 bits (70), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 6/92 (6%)

Query: 115 EVKAIAGLLEEGKFDEVSFCTRPEGILLMCSEGYEA-FESRKSILNDALDALSNPNVDVI 173
           E K+  G L+    DE+S     +G  +  S+ Y   FE R +   D    LSNP V   
Sbjct: 14  EPKSFNGSLKNVAVDELS----RQGCTVTVSDLYAMNFEPRATD-KDITGTLSNPEVFNY 68

Query: 174 GLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVF 205
           G+       + +LA  + D+ KK++  D V+F
Sbjct: 69  GVETHEAYKQRSLASDITDEQKKVREADLVIF 100


>pdb|1QR2|A Chain A, Human Quinone Reductase Type 2
 pdb|1QR2|B Chain B, Human Quinone Reductase Type 2
 pdb|2QR2|A Chain A, Human Quinone Reductase Type 2, Complex With Menadione
 pdb|2QR2|B Chain B, Human Quinone Reductase Type 2, Complex With Menadione
 pdb|1SG0|A Chain A, Crystal Structure Analysis Of Qr2 In Complex With
           Resveratrol
 pdb|1SG0|B Chain B, Crystal Structure Analysis Of Qr2 In Complex With
           Resveratrol
 pdb|1XI2|A Chain A, Quinone Reductase 2 In Complex With Cancer Prodrug Cb1954
 pdb|1XI2|B Chain B, Quinone Reductase 2 In Complex With Cancer Prodrug Cb1954
 pdb|2QMY|A Chain A, Quinone Reductase 2 In Complex With Adrenochrome
 pdb|2QMY|B Chain B, Quinone Reductase 2 In Complex With Adrenochrome
 pdb|2QMZ|A Chain A, Quinone Reductase 2 In Complex With Dopamine
 pdb|2QMZ|B Chain B, Quinone Reductase 2 In Complex With Dopamine
 pdb|2QX8|A Chain A, Crystal Structure Of Quinone Reductase Ii
 pdb|2QX8|B Chain B, Crystal Structure Of Quinone Reductase Ii
 pdb|2QX9|A Chain A, Crystal Structure Of Quinone Reductase Ii
 pdb|2QX9|B Chain B, Crystal Structure Of Quinone Reductase Ii
 pdb|2QX4|A Chain A, Crystal Structure Of Quinone Reductase Ii
 pdb|2QX4|B Chain B, Crystal Structure Of Quinone Reductase Ii
 pdb|2QX6|A Chain A, Crystal Structure Of Quinone Reductase Ii
 pdb|2QX6|B Chain B, Crystal Structure Of Quinone Reductase Ii
 pdb|3O2N|A Chain A, X-Ray Crystallographic Structure Activity Relationship
           (Sar) Of Casimiroin And Its Analogs Bound To Human
           Quinone Reductase 2
 pdb|3O2N|B Chain B, X-Ray Crystallographic Structure Activity Relationship
           (Sar) Of Casimiroin And Its Analogs Bound To Human
           Quinone Reductase 2
 pdb|3NFR|A Chain A, Casimiroin Analog Inhibitor Of Quinone Reductase 2
 pdb|3NFR|B Chain B, Casimiroin Analog Inhibitor Of Quinone Reductase 2
 pdb|3NHF|A Chain A, X-Ray Crystallographic Structure Activity Relationship
           (Sar) Of Casimiroin And Its Analogs Bound To Human
           Quinone Reductase 2
 pdb|3NHF|B Chain B, X-Ray Crystallographic Structure Activity Relationship
           (Sar) Of Casimiroin And Its Analogs Bound To Human
           Quinone Reductase 2
 pdb|3NHJ|A Chain A, X-Ray Crystallographic Structure Activity Relationship
           (Sar) Of Casimiroin And Its Analogs Bound To Human
           Quinone Reductase 2
 pdb|3NHJ|B Chain B, X-Ray Crystallographic Structure Activity Relationship
           (Sar) Of Casimiroin And Its Analogs Bound To Human
           Quinone Reductase 2
 pdb|3NHK|A Chain A, X-Ray Crystallographic Structure Activity Relationship
           (Sar) Of Casimiroin And Its Analogs Bound To Human
           Quinone Reductase 2
 pdb|3NHK|B Chain B, X-Ray Crystallographic Structure Activity Relationship
           (Sar) Of Casimiroin And Its Analogs Bound To Human
           Quinone Reductase 2
 pdb|3NHL|A Chain A, X-Ray Crystallographic Structure Activity Relationship
           (Sar) Of Casimiroin And Its Analogs Bound To Human
           Quinone Reductase 2
 pdb|3NHL|B Chain B, X-Ray Crystallographic Structure Activity Relationship
           (Sar) Of Casimiroin And Its Analogs Bound To Human
           Quinone Reductase 2
 pdb|3NHP|A Chain A, X-Ray Crystallographic Structure Activity Relationship
           (Sar) Of Casimiroin And Its Analogs Bound To Human
           Quinone Reductase 2
 pdb|3NHP|B Chain B, X-Ray Crystallographic Structure Activity Relationship
           (Sar) Of Casimiroin And Its Analogs Bound To Human
           Quinone Reductase 2
 pdb|3NHR|A Chain A, X-Ray Crystallographic Structure Activity Relationship
           (Sar) Of Casimiroin And Its Analogs Bound To Human
           Quinone Reductase 2
 pdb|3NHR|B Chain B, X-Ray Crystallographic Structure Activity Relationship
           (Sar) Of Casimiroin And Its Analogs Bound To Human
           Quinone Reductase 2
 pdb|3NHS|A Chain A, X-Ray Crystallographic Structure Activity Relationship
           (Sar) Of Casimiroin And Its Analogs Bound To Human
           Quinone Reductase 2
 pdb|3NHS|B Chain B, X-Ray Crystallographic Structure Activity Relationship
           (Sar) Of Casimiroin And Its Analogs Bound To Human
           Quinone Reductase 2
 pdb|3NHU|A Chain A, X-Ray Crystallographic Structure Activity Relationship
           (Sar) Of Casimiroin And Its Analogs Bound To Human
           Quinone Reductase 2
 pdb|3NHU|B Chain B, X-Ray Crystallographic Structure Activity Relationship
           (Sar) Of Casimiroin And Its Analogs Bound To Human
           Quinone Reductase 2
 pdb|3NHW|A Chain A, X-Ray Crystallographic Structure Activity Relationship
           (Sar) Of Casimiroin And Its Analogs Bound To Human
           Quinone Reductase 2
 pdb|3NHW|B Chain B, X-Ray Crystallographic Structure Activity Relationship
           (Sar) Of Casimiroin And Its Analogs Bound To Human
           Quinone Reductase 2
 pdb|3NHY|A Chain A, X-Ray Crystallographic Structure Activity Relationship
           (Sar) Of Casimiroin And Its Analogs Bound To Human
           Quinone Reductase 2
 pdb|3NHY|B Chain B, X-Ray Crystallographic Structure Activity Relationship
           (Sar) Of Casimiroin And Its Analogs Bound To Human
           Quinone Reductase 2
 pdb|3UXE|A Chain A, Design, Synthesis And Biological Evaluation Of Potent
           Quinoline And Pyrroloquinoline Ammosamide Analogues As
           Inhibitors For Quinone Reductase 2
 pdb|3UXE|B Chain B, Design, Synthesis And Biological Evaluation Of Potent
           Quinoline And Pyrroloquinoline Ammosamide Analogues As
           Inhibitors For Quinone Reductase 2
 pdb|3UXH|A Chain A, Design, Synthesis And Biological Evaluation Of Potetent
           Quinoline And Pyrroloquinoline Ammosamide Analogues As
           Inhibitors Of Quinone Reductase 2
 pdb|3UXH|B Chain B, Design, Synthesis And Biological Evaluation Of Potetent
           Quinoline And Pyrroloquinoline Ammosamide Analogues As
           Inhibitors Of Quinone Reductase 2
          Length = 230

 Score = 31.6 bits (70), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 6/92 (6%)

Query: 115 EVKAIAGLLEEGKFDEVSFCTRPEGILLMCSEGYEA-FESRKSILNDALDALSNPNVDVI 173
           E K+  G L+    DE+S     +G  +  S+ Y   FE R +   D    LSNP V   
Sbjct: 13  EPKSFNGSLKNVAVDELS----RQGCTVTVSDLYAMNFEPRATD-KDITGTLSNPEVFNY 67

Query: 174 GLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVF 205
           G+       + +LA  + D+ KK++  D V+F
Sbjct: 68  GVETHEAYKQRSLASDITDEQKKVREADLVIF 99


>pdb|3TZB|A Chain A, Quinone Oxidoreductase (Nq02) Bound To Nsc13000
 pdb|3TZB|B Chain B, Quinone Oxidoreductase (Nq02) Bound To Nsc13000
 pdb|3TZB|C Chain C, Quinone Oxidoreductase (Nq02) Bound To Nsc13000
 pdb|3TZB|D Chain D, Quinone Oxidoreductase (Nq02) Bound To Nsc13000
          Length = 230

 Score = 31.6 bits (70), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 6/92 (6%)

Query: 115 EVKAIAGLLEEGKFDEVSFCTRPEGILLMCSEGYEA-FESRKSILNDALDALSNPNVDVI 173
           E K+  G L+    DE+S     +G  +  S+ Y   FE R +   D    LSNP V   
Sbjct: 14  EPKSFNGSLKNVAVDELS----RQGCTVTVSDLYAMNFEPRATD-KDITGTLSNPEVFNY 68

Query: 174 GLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVF 205
           G+       + +LA  + D+ KK++  D V+F
Sbjct: 69  GVETHEAYKQRSLASDITDEQKKVREADLVIF 100


>pdb|3TE7|A Chain A, Quinone Oxidoreductase (Nq02) Bound To The
           Imidazoacridin-6-One 5a1
 pdb|3TE7|B Chain B, Quinone Oxidoreductase (Nq02) Bound To The
           Imidazoacridin-6-One 5a1
 pdb|3TEM|A Chain A, Quinone Oxidoreductase (Nq02) Bound To The
           Imidazoacridin-6-One 6a1
 pdb|3TEM|B Chain B, Quinone Oxidoreductase (Nq02) Bound To The
           Imidazoacridin-6-One 6a1
          Length = 228

 Score = 31.6 bits (70), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 6/92 (6%)

Query: 115 EVKAIAGLLEEGKFDEVSFCTRPEGILLMCSEGYEA-FESRKSILNDALDALSNPNVDVI 173
           E K+  G L+    DE+S     +G  +  S+ Y   FE R +   D    LSNP V   
Sbjct: 12  EPKSFNGSLKNVAVDELS----RQGCTVTVSDLYAMNFEPRATD-KDITGTLSNPEVFNY 66

Query: 174 GLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVF 205
           G+       + +LA  + D+ KK++  D V+F
Sbjct: 67  GVETHEAYKQRSLASDITDEQKKVREADLVIF 98


>pdb|3FW1|A Chain A, Quinone Reductase 2
          Length = 233

 Score = 31.2 bits (69), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 6/92 (6%)

Query: 115 EVKAIAGLLEEGKFDEVSFCTRPEGILLMCSEGYEA-FESRKSILNDALDALSNPNVDVI 173
           E K+  G L+    DE+S     +G  +  S+ Y   FE R +   D    LSNP V   
Sbjct: 16  EPKSFNGSLKNVAVDELS----RQGCTVTVSDLYAMNFEPRATD-KDITGTLSNPEVFNY 70

Query: 174 GLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVF 205
           G+       + +LA  + D+ KK++  D V+F
Sbjct: 71  GVETHEAYKQRSLASDITDEQKKVREADLVIF 102


>pdb|2BZS|A Chain A, Binding Of Anti-Cancer Prodrug Cb1954 To The Activating
           Enzyme Nqo2 Revealed By The Crystal Structure Of Their
           Complex.
 pdb|2BZS|B Chain B, Binding Of Anti-Cancer Prodrug Cb1954 To The Activating
           Enzyme Nqo2 Revealed By The Crystal Structure Of Their
           Complex
          Length = 236

 Score = 31.2 bits (69), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 6/92 (6%)

Query: 115 EVKAIAGLLEEGKFDEVSFCTRPEGILLMCSEGYEA-FESRKSILNDALDALSNPNVDVI 173
           E K+  G L+    DE+S     +G  +  S+ Y   FE R +   D    LSNP V   
Sbjct: 19  EPKSFNGSLKNVAVDELS----RQGCTVTVSDLYAMNFEPRATD-KDITGTLSNPEVFNY 73

Query: 174 GLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVF 205
           G+       + +LA  + D+ KK++  D V+F
Sbjct: 74  GVETHEAYKQRSLASDITDEQKKVREADLVIF 105


>pdb|3O73|A Chain A, Crystal Structure Of Quinone Reductase 2 In Complex With
           The Indolequinone Mac627
 pdb|3O73|B Chain B, Crystal Structure Of Quinone Reductase 2 In Complex With
           The Indolequinone Mac627
          Length = 237

 Score = 31.2 bits (69), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 6/92 (6%)

Query: 115 EVKAIAGLLEEGKFDEVSFCTRPEGILLMCSEGYEA-FESRKSILNDALDALSNPNVDVI 173
           E K+  G L+    DE+S     +G  +  S+ Y   FE R +   D    LSNP V   
Sbjct: 14  EPKSFNGSLKNVAVDELS----RQGCTVTVSDLYAMNFEPRATD-KDITGTLSNPEVFNY 68

Query: 174 GLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVF 205
           G+       + +LA  + D+ KK++  D V+F
Sbjct: 69  GVETHEAYKQRSLASDITDEQKKVREADLVIF 100


>pdb|1TQH|A Chain A, Covalent Reaction Intermediate Revealed In Crystal
           Structure Of The Geobacillus Stearothermophilus
           Carboxylesterase Est30
          Length = 247

 Score = 30.4 bits (67), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 101 NLMNRYQLSKKAAWEVKAIAGLLEEGKFD-EVSFCTRPEGILLMCSEGY 148
           ++MN Y+  K   +E  A+AGL   G F  ++ +    EGI+ MC+  Y
Sbjct: 72  DVMNGYEFLKNKGYEKIAVAGLSLGGVFSLKLGYTVPIEGIVTMCAPMY 120


>pdb|4DIU|A Chain A, Crystal Structure Of Engineered Protein. Northeast
           Structural Genomics Consortium Target Or94
          Length = 248

 Score = 30.4 bits (67), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 101 NLMNRYQLSKKAAWEVKAIAGLLEEGKFD-EVSFCTRPEGILLMCSEGY 148
           ++MN Y+  K   +E  A+AGL   G F  ++ +    EGI+ MC+  Y
Sbjct: 71  DVMNGYEFLKNKGYEKIAVAGLSLGGVFSLKLGYTVPIEGIVTMCAPMY 119


>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
           (-Fes Domain)
 pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
           (-Fes Domain)
          Length = 538

 Score = 29.3 bits (64), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 11/21 (52%), Positives = 16/21 (76%)

Query: 171 DVIGLCGVGGIGKTTLAKIVC 191
           ++IG+ G  GIGKTT A+I+ 
Sbjct: 295 EIIGILGPNGIGKTTFARILV 315


>pdb|3V9P|A Chain A, Crystal Structure Of Thymidylate Kinase From Burkholderia
           Thailandensis
 pdb|3V9P|B Chain B, Crystal Structure Of Thymidylate Kinase From Burkholderia
           Thailandensis
          Length = 227

 Score = 28.9 bits (63), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 2/72 (2%)

Query: 173 IGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNICEG 232
           I   G+ G GKTT  +  CD+ ++ ++      V V+R P   R+ G+   ++ LN    
Sbjct: 28  ITFEGIDGAGKTTHLQWFCDRLQE-RLGPAGRHVVVTREPGGTRL-GETLREILLNQPMD 85

Query: 233 SESERAMMLCGQ 244
            E+E  +M  G+
Sbjct: 86  LETEALLMFAGR 97


>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
           Bound To Adp
 pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
           Bound To Adp
 pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
           Bound To Adp
 pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
           Bound To Adp
          Length = 591

 Score = 28.9 bits (63), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 54/127 (42%), Gaps = 20/127 (15%)

Query: 151 FESRKSILNDALDALSNPNVDV--IGLCGVGGIGKTTLAKIVCDQAKKLKVCDE--VVFV 206
           F +RK ++N     LS    +   + + G+ G GK+ LA         L+ C    V +V
Sbjct: 126 FVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWV 185

Query: 207 EVSRTPD----------VKRIQGD--VADQLSLNICEGSESERAMMLCGQLKKGKKILFV 254
            V +               R+  D   + +L LNI E  +  R +ML    +K  + L +
Sbjct: 186 SVGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILML----RKHPRSLLI 241

Query: 255 LDNIWTS 261
           LD++W S
Sbjct: 242 LDDVWDS 248


>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
           Ribosomal Binding Partners
          Length = 608

 Score = 28.5 bits (62), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 8/69 (11%)

Query: 128 FDEVSFCTRPEGILLMCSEGYEAFESRKSILNDALDALSNPNV-DVIGLCGVGGIGKTTL 186
           FD +     P  +    +  Y A   +       L  L  P    V+GL G  GIGK+T 
Sbjct: 67  FDAIQIINLPTNLEAHVTHRYSANSFK-------LHRLPTPRPGQVLGLVGTNGIGKSTA 119

Query: 187 AKIVCDQAK 195
            KI+  + K
Sbjct: 120 LKILAGKQK 128


>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
 pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
 pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
 pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
 pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
 pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
 pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
          Length = 1263

 Score = 28.5 bits (62), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 54/127 (42%), Gaps = 20/127 (15%)

Query: 151 FESRKSILNDALDALSNPNVDV--IGLCGVGGIGKTTLAKIVCDQAKKLKVCDE--VVFV 206
           F +RK ++N     LS    +   + + G+ G GK+ LA         L+ C    V +V
Sbjct: 132 FVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWV 191

Query: 207 EVSRTPD----------VKRIQGD--VADQLSLNICEGSESERAMMLCGQLKKGKKILFV 254
            V +               R+  D   + +L LNI E  +  R +ML    +K  + L +
Sbjct: 192 SVGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILML----RKHPRSLLI 247

Query: 255 LDNIWTS 261
           LD++W S
Sbjct: 248 LDDVWDS 254


>pdb|1VMA|A Chain A, Crystal Structure Of Cell Division Protein Ftsy (Tm0570)
           From Thermotoga Maritima At 1.60 A Resolution
 pdb|1VMA|B Chain B, Crystal Structure Of Cell Division Protein Ftsy (Tm0570)
           From Thermotoga Maritima At 1.60 A Resolution
          Length = 306

 Score = 28.1 bits (61), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 9/56 (16%)

Query: 149 EAFESRKSILNDALDALSNPNVD-----VIGLCGVGGIGKTT----LAKIVCDQAK 195
           +A ES K I+ + L+  +  NV      VI + GV G GKTT    LAK+  D+ K
Sbjct: 78  DALESLKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGK 133


>pdb|2GMH|A Chain A, Structure Of Porcine Electron Transfer Flavoprotein-
           Ubiquinone Oxidoreductase In Complexed With Ubiquinone
 pdb|2GMH|B Chain B, Structure Of Porcine Electron Transfer Flavoprotein-
           Ubiquinone Oxidoreductase In Complexed With Ubiquinone
 pdb|2GMJ|A Chain A, Structure Of Porcine Electron Transfer Flavoprotein-
           Ubiquinone Oxidoreductase
 pdb|2GMJ|B Chain B, Structure Of Porcine Electron Transfer Flavoprotein-
           Ubiquinone Oxidoreductase
          Length = 584

 Score = 28.1 bits (61), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 4/49 (8%)

Query: 100 PNLMNRYQLSKKAAWEVKAIAGLLEEGKFDEVSFCTRPEGILLMCSEGY 148
           P++    +  K+ A+  +A    L EG F  +   T P G+L+ CS G+
Sbjct: 314 PSIKPTLEGGKRIAYGARA----LNEGGFQSIPKLTFPGGLLIGCSPGF 358


>pdb|1R1D|A Chain A, Structure Of A Carboxylesterase From Bacillus
           Stearothermophilus
 pdb|1R1D|B Chain B, Structure Of A Carboxylesterase From Bacillus
           Stearothermophilus
          Length = 247

 Score = 27.7 bits (60), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 101 NLMNRYQLSKKAAWEVKAIAGLLEEGKFD-EVSFCTRPEGILLMCSEGY 148
           ++ N YQ  K   +E  A+AGL   G F  ++ +    EGI+  C+  Y
Sbjct: 72  DVXNGYQFLKNKGYEKIAVAGLSLGGVFSLKLGYTVPIEGIVTXCAPXY 120


>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
           From Pyrococcus Abysii
          Length = 607

 Score = 27.3 bits (59), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 11/21 (52%), Positives = 15/21 (71%)

Query: 171 DVIGLCGVGGIGKTTLAKIVC 191
           +VIG+ G  GIGKTT  K++ 
Sbjct: 383 EVIGIVGPNGIGKTTFVKMLA 403


>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
          Length = 593

 Score = 27.3 bits (59), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 11/21 (52%), Positives = 15/21 (71%)

Query: 171 DVIGLCGVGGIGKTTLAKIVC 191
           +VIG+ G  GIGKTT  K++ 
Sbjct: 369 EVIGIVGPNGIGKTTFVKMLA 389


>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
           Pyrococcus Furiosus Pfu-867808-001
          Length = 214

 Score = 27.3 bits (59), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 13/28 (46%), Positives = 16/28 (57%)

Query: 171 DVIGLCGVGGIGKTTLAKIVCDQAKKLK 198
           +V+   G  GIGKTTL K +    K LK
Sbjct: 36  NVVNFHGPNGIGKTTLLKTISTYLKPLK 63


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.136    0.401 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,812,571
Number of Sequences: 62578
Number of extensions: 231174
Number of successful extensions: 687
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 678
Number of HSP's gapped (non-prelim): 25
length of query: 266
length of database: 14,973,337
effective HSP length: 97
effective length of query: 169
effective length of database: 8,903,271
effective search space: 1504652799
effective search space used: 1504652799
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)