Query 045699
Match_columns 266
No_of_seqs 193 out of 1691
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 04:38:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045699.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045699hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 2.2E-31 4.8E-36 255.9 23.6 253 3-265 2-277 (889)
2 PF00931 NB-ARC: NB-ARC domain 99.8 1.8E-20 3.8E-25 161.2 10.4 111 154-265 1-117 (287)
3 PLN03210 Resistant to P. syrin 99.5 1.1E-13 2.4E-18 139.2 11.5 113 148-265 183-312 (1153)
4 PRK00411 cdc6 cell division co 99.1 1.9E-09 4.2E-14 96.9 13.6 114 148-261 29-150 (394)
5 cd01128 rho_factor Transcripti 99.0 7.2E-10 1.6E-14 93.1 7.8 92 168-260 14-114 (249)
6 TIGR02928 orc1/cdc6 family rep 99.0 4.6E-09 1E-13 93.5 13.1 114 148-261 14-141 (365)
7 PF13401 AAA_22: AAA domain; P 99.0 2.7E-09 5.7E-14 80.7 8.6 92 169-260 3-98 (131)
8 PRK09376 rho transcription ter 99.0 3.4E-09 7.4E-14 93.2 9.1 92 168-260 167-267 (416)
9 TIGR03015 pepcterm_ATPase puta 98.9 3E-08 6.5E-13 84.4 13.2 92 167-261 40-135 (269)
10 COG1474 CDC6 Cdc6-related prot 98.8 1E-07 2.2E-12 84.5 12.9 115 148-262 16-136 (366)
11 TIGR00767 rho transcription te 98.8 4.9E-08 1.1E-12 86.4 10.3 92 168-260 166-266 (415)
12 PTZ00202 tuzin; Provisional 98.7 3E-07 6.6E-12 81.9 13.5 102 145-255 258-367 (550)
13 PF13191 AAA_16: AAA ATPase do 98.7 8.8E-08 1.9E-12 76.6 8.4 47 151-197 2-51 (185)
14 cd00009 AAA The AAA+ (ATPases 98.7 2.8E-07 6E-12 70.2 10.7 58 153-212 2-59 (151)
15 PF01637 Arch_ATPase: Archaeal 98.6 5.2E-08 1.1E-12 80.7 5.6 45 151-195 1-45 (234)
16 PF05729 NACHT: NACHT domain 98.5 3.5E-07 7.5E-12 71.6 8.0 87 171-262 1-94 (166)
17 PRK11331 5-methylcytosine-spec 98.5 1.2E-06 2.6E-11 78.9 10.1 108 149-260 175-283 (459)
18 PRK13342 recombination factor 98.4 8.1E-07 1.8E-11 80.5 7.8 50 146-195 9-61 (413)
19 PTZ00112 origin recognition co 98.3 9.7E-06 2.1E-10 77.9 13.3 114 148-261 754-881 (1164)
20 COG1120 FepC ABC-type cobalami 98.2 6E-06 1.3E-10 69.3 8.8 94 168-264 26-171 (258)
21 COG2256 MGS1 ATPase related to 98.2 7.4E-06 1.6E-10 71.9 9.3 93 145-260 20-115 (436)
22 smart00382 AAA ATPases associa 98.2 1.2E-05 2.6E-10 60.4 9.1 91 170-263 2-92 (148)
23 PRK08118 topology modulation p 98.2 9.2E-07 2E-11 70.0 2.7 35 171-205 2-37 (167)
24 PRK04841 transcriptional regul 98.2 2.5E-05 5.4E-10 77.6 12.6 105 148-261 13-133 (903)
25 KOG2028 ATPase related to the 98.1 1.3E-05 2.8E-10 69.6 8.6 80 162-260 154-233 (554)
26 PRK12608 transcription termina 98.1 4.4E-05 9.6E-10 67.4 12.0 101 159-260 121-231 (380)
27 PF13173 AAA_14: AAA domain 98.1 4.6E-06 1E-10 62.9 4.8 76 170-265 2-77 (128)
28 PF05621 TniB: Bacterial TniB 98.1 6.2E-05 1.3E-09 64.4 11.9 107 156-262 44-158 (302)
29 TIGR00635 ruvB Holliday juncti 98.1 2.9E-05 6.2E-10 67.4 10.1 106 148-261 3-120 (305)
30 PRK07261 topology modulation p 98.1 1.9E-05 4.1E-10 62.8 8.2 50 172-221 2-52 (171)
31 PRK12402 replication factor C 98.0 3.6E-05 7.9E-10 67.6 9.5 49 147-195 13-61 (337)
32 PF05496 RuvB_N: Holliday junc 98.0 2.2E-05 4.8E-10 64.3 7.3 51 145-195 20-75 (233)
33 CHL00095 clpC Clp protease ATP 98.0 3.1E-05 6.8E-10 76.0 9.7 48 148-195 178-225 (821)
34 TIGR03420 DnaA_homol_Hda DnaA 98.0 2.1E-05 4.6E-10 65.1 7.4 56 153-210 21-76 (226)
35 PF04665 Pox_A32: Poxvirus A32 98.0 2.3E-05 4.9E-10 65.3 6.7 37 170-208 13-49 (241)
36 KOG2543 Origin recognition com 97.9 9.2E-05 2E-09 64.7 10.3 112 148-264 5-130 (438)
37 TIGR02639 ClpA ATP-dependent C 97.9 6.8E-05 1.5E-09 72.8 10.7 48 148-195 181-228 (731)
38 PRK04195 replication factor C 97.9 4.7E-05 1E-09 70.4 9.1 49 147-195 12-64 (482)
39 PRK00080 ruvB Holliday junctio 97.9 0.0001 2.3E-09 64.7 10.8 106 147-260 23-140 (328)
40 PRK13341 recombination factor 97.9 5E-05 1.1E-09 73.1 9.3 51 145-195 24-77 (725)
41 TIGR02903 spore_lon_C ATP-depe 97.9 4E-05 8.6E-10 72.8 8.5 63 147-209 152-217 (615)
42 PF00004 AAA: ATPase family as 97.9 2.5E-05 5.4E-10 58.6 5.8 23 173-195 1-23 (132)
43 PLN03025 replication factor C 97.9 0.00012 2.5E-09 64.2 10.8 49 146-194 10-58 (319)
44 KOG2227 Pre-initiation complex 97.9 0.00021 4.6E-09 64.0 11.8 116 145-260 146-267 (529)
45 COG0488 Uup ATPase components 97.9 0.0001 2.2E-09 68.4 9.8 97 168-265 346-473 (530)
46 PRK00440 rfc replication facto 97.8 0.00022 4.8E-09 62.1 11.3 50 146-195 14-63 (319)
47 PRK06893 DNA replication initi 97.8 7.4E-05 1.6E-09 62.2 7.8 39 169-209 38-76 (229)
48 TIGR03689 pup_AAA proteasome A 97.8 0.00014 3E-09 67.2 9.9 48 148-195 181-241 (512)
49 COG1121 ZnuC ABC-type Mn/Zn tr 97.8 0.00011 2.4E-09 61.5 8.2 92 169-263 29-171 (254)
50 cd01133 F1-ATPase_beta F1 ATP 97.8 0.00025 5.5E-09 60.2 10.6 91 168-260 67-174 (274)
51 TIGR03345 VI_ClpV1 type VI sec 97.8 0.00015 3.3E-09 71.3 10.0 48 148-195 186-233 (852)
52 cd01123 Rad51_DMC1_radA Rad51_ 97.8 0.00029 6.3E-09 58.7 10.2 91 169-260 18-126 (235)
53 COG2909 MalT ATP-dependent tra 97.7 0.00058 1.3E-08 65.3 13.1 105 148-259 18-139 (894)
54 COG4608 AppF ABC-type oligopep 97.7 9.3E-05 2E-09 62.1 6.9 92 168-264 37-142 (268)
55 PRK08727 hypothetical protein; 97.7 0.00017 3.7E-09 60.2 8.5 51 157-209 28-78 (233)
56 PHA00729 NTP-binding motif con 97.7 0.00014 3.1E-09 59.9 7.6 35 160-194 7-41 (226)
57 cd03222 ABC_RNaseL_inhibitor T 97.7 0.00019 4.1E-09 57.3 8.2 28 168-195 23-50 (177)
58 KOG2004 Mitochondrial ATP-depe 97.7 0.00082 1.8E-08 63.3 13.2 101 148-260 410-516 (906)
59 COG1124 DppF ABC-type dipeptid 97.7 0.00019 4.1E-09 59.2 8.1 95 168-263 31-173 (252)
60 PRK14949 DNA polymerase III su 97.7 0.00021 4.6E-09 69.4 9.6 50 146-195 13-63 (944)
61 TIGR02237 recomb_radB DNA repa 97.7 0.0003 6.5E-09 57.5 9.5 88 169-260 11-108 (209)
62 PRK10865 protein disaggregatio 97.7 0.00028 6.1E-09 69.6 10.8 48 148-195 177-224 (857)
63 PRK14963 DNA polymerase III su 97.7 0.00029 6.4E-09 65.3 10.3 50 147-196 12-62 (504)
64 COG1126 GlnQ ABC-type polar am 97.7 0.00049 1.1E-08 55.9 10.0 94 168-265 26-170 (240)
65 PRK03992 proteasome-activating 97.7 0.00015 3.2E-09 65.3 7.9 48 148-195 130-190 (389)
66 KOG0733 Nuclear AAA ATPase (VC 97.7 0.00023 5.1E-09 65.7 9.0 92 148-259 189-292 (802)
67 TIGR01242 26Sp45 26S proteasom 97.7 9.4E-05 2E-09 66.0 6.2 48 148-195 121-181 (364)
68 cd03238 ABC_UvrA The excision 97.7 0.00045 9.8E-09 55.1 9.5 88 168-264 19-122 (176)
69 cd01120 RecA-like_NTPases RecA 97.7 0.00061 1.3E-08 52.7 10.2 40 172-213 1-40 (165)
70 TIGR02881 spore_V_K stage V sp 97.6 0.00017 3.6E-09 61.3 7.3 26 169-194 41-66 (261)
71 PRK14962 DNA polymerase III su 97.6 0.00049 1.1E-08 63.3 10.7 49 147-195 12-61 (472)
72 TIGR03346 chaperone_ClpB ATP-d 97.6 0.00042 9.1E-09 68.5 10.6 48 148-195 172-219 (852)
73 PRK14961 DNA polymerase III su 97.6 0.00068 1.5E-08 60.4 10.9 49 147-195 14-63 (363)
74 PF13207 AAA_17: AAA domain; P 97.6 6.1E-05 1.3E-09 55.9 3.6 24 172-195 1-24 (121)
75 KOG0927 Predicted transporter 97.6 0.00013 2.7E-09 66.5 6.1 98 168-265 414-543 (614)
76 PRK08116 hypothetical protein; 97.6 0.00024 5.1E-09 60.6 7.5 74 171-259 115-188 (268)
77 PHA02544 44 clamp loader, smal 97.6 0.00041 8.8E-09 60.5 9.1 49 146-194 18-67 (316)
78 PRK14958 DNA polymerase III su 97.6 0.00054 1.2E-08 63.7 10.3 51 145-195 12-63 (509)
79 PRK14957 DNA polymerase III su 97.6 0.00082 1.8E-08 62.7 11.0 50 146-195 13-63 (546)
80 PRK11034 clpA ATP-dependent Cl 97.5 0.0004 8.6E-09 67.3 9.1 47 148-194 185-231 (758)
81 COG1484 DnaC DNA replication p 97.5 0.00083 1.8E-08 56.8 10.0 75 169-260 104-178 (254)
82 PF00005 ABC_tran: ABC transpo 97.5 0.00055 1.2E-08 51.9 8.1 88 169-260 10-137 (137)
83 PRK09361 radB DNA repair and r 97.5 0.00066 1.4E-08 56.2 9.1 88 168-260 21-118 (225)
84 TIGR01241 FtsH_fam ATP-depende 97.5 0.00057 1.2E-08 63.5 9.5 48 148-195 54-113 (495)
85 PRK14956 DNA polymerase III su 97.5 0.00029 6.3E-09 64.3 7.3 51 145-195 14-65 (484)
86 cd03214 ABC_Iron-Siderophores_ 97.5 0.0018 3.9E-08 51.7 11.2 92 168-264 23-130 (180)
87 TIGR02012 tigrfam_recA protein 97.5 0.00068 1.5E-08 59.1 9.1 87 168-261 53-145 (321)
88 PF01695 IstB_IS21: IstB-like 97.5 0.0003 6.5E-09 56.2 6.4 75 169-261 46-120 (178)
89 PRK06696 uridine kinase; Valid 97.5 0.00023 5E-09 59.0 5.9 43 153-195 2-47 (223)
90 PRK12377 putative replication 97.5 0.00045 9.7E-09 58.1 7.7 75 169-260 100-174 (248)
91 PRK07003 DNA polymerase III su 97.5 0.00082 1.8E-08 64.3 10.2 50 146-195 13-63 (830)
92 PF05673 DUF815: Protein of un 97.5 0.00075 1.6E-08 56.1 8.7 49 148-196 26-78 (249)
93 cd03223 ABCD_peroxisomal_ALDP 97.5 0.00097 2.1E-08 52.6 9.1 95 168-265 25-125 (166)
94 COG2255 RuvB Holliday junction 97.5 0.0002 4.3E-09 60.4 5.2 50 148-197 25-79 (332)
95 PRK14955 DNA polymerase III su 97.5 0.0011 2.4E-08 59.8 10.4 50 147-196 14-64 (397)
96 TIGR03499 FlhF flagellar biosy 97.5 0.00087 1.9E-08 57.6 9.2 87 169-258 193-281 (282)
97 PRK14088 dnaA chromosomal repl 97.5 0.00058 1.3E-08 62.4 8.5 76 170-261 130-206 (440)
98 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.5 0.00063 1.4E-08 52.4 7.6 28 168-195 24-51 (144)
99 cd03237 ABC_RNaseL_inhibitor_d 97.5 0.001 2.2E-08 56.0 9.4 93 169-264 24-148 (246)
100 PRK12323 DNA polymerase III su 97.5 0.00096 2.1E-08 63.0 10.0 50 146-195 13-63 (700)
101 PRK09354 recA recombinase A; P 97.4 0.00093 2E-08 58.8 9.4 87 168-261 58-150 (349)
102 cd00983 recA RecA is a bacter 97.4 0.00085 1.9E-08 58.5 9.0 87 168-261 53-145 (325)
103 COG0488 Uup ATPase components 97.4 0.00069 1.5E-08 63.0 8.8 28 168-195 27-54 (530)
104 PTZ00454 26S protease regulato 97.4 0.00071 1.5E-08 60.9 8.6 48 148-195 144-204 (398)
105 PF00448 SRP54: SRP54-type pro 97.4 0.0018 3.8E-08 52.6 10.2 57 170-228 1-58 (196)
106 cd01393 recA_like RecA is a b 97.4 0.0024 5.2E-08 52.8 11.2 92 169-261 18-126 (226)
107 PRK08084 DNA replication initi 97.4 0.0014 2.9E-08 54.9 9.7 52 157-210 32-83 (235)
108 cd03216 ABC_Carb_Monos_I This 97.4 0.00043 9.3E-09 54.5 6.3 28 168-195 24-51 (163)
109 PRK07952 DNA replication prote 97.4 0.002 4.4E-08 54.0 10.5 89 157-261 84-174 (244)
110 COG1222 RPT1 ATP-dependent 26S 97.4 0.00098 2.1E-08 58.0 8.6 93 148-260 150-255 (406)
111 PRK05541 adenylylsulfate kinas 97.4 0.00044 9.5E-09 55.0 6.2 36 169-206 6-41 (176)
112 cd03269 ABC_putative_ATPase Th 97.4 0.002 4.3E-08 52.7 10.3 26 169-194 25-50 (210)
113 PRK08939 primosomal protein Dn 97.4 0.00078 1.7E-08 58.5 8.2 90 153-260 135-228 (306)
114 smart00763 AAA_PrkA PrkA AAA d 97.4 0.00029 6.3E-09 62.0 5.4 46 150-195 52-103 (361)
115 PRK14969 DNA polymerase III su 97.4 0.0017 3.6E-08 60.7 10.8 49 147-195 14-63 (527)
116 PRK14722 flhF flagellar biosyn 97.4 0.0011 2.4E-08 58.9 9.1 60 169-228 136-196 (374)
117 PRK06645 DNA polymerase III su 97.4 0.0019 4E-08 59.9 10.9 51 146-196 18-69 (507)
118 PRK08181 transposase; Validate 97.4 0.00049 1.1E-08 58.6 6.6 78 163-260 101-178 (269)
119 PRK14951 DNA polymerase III su 97.4 0.0013 2.9E-08 62.2 9.8 50 146-195 13-63 (618)
120 PRK14960 DNA polymerase III su 97.4 0.0018 4E-08 61.2 10.6 50 146-195 12-62 (702)
121 CHL00176 ftsH cell division pr 97.3 0.0011 2.4E-08 63.1 9.4 48 148-195 182-241 (638)
122 TIGR00602 rad24 checkpoint pro 97.3 0.00029 6.2E-09 66.8 5.3 51 145-195 80-135 (637)
123 cd03293 ABC_NrtD_SsuB_transpor 97.3 0.0025 5.3E-08 52.6 10.3 26 169-194 29-54 (220)
124 cd03247 ABCC_cytochrome_bd The 97.3 0.0012 2.7E-08 52.6 8.1 87 169-264 27-131 (178)
125 CHL00181 cbbX CbbX; Provisiona 97.3 0.0019 4.1E-08 55.6 9.8 26 170-195 59-84 (287)
126 cd03235 ABC_Metallic_Cations A 97.3 0.003 6.5E-08 51.8 10.6 27 168-194 23-49 (213)
127 PRK05896 DNA polymerase III su 97.3 0.0017 3.7E-08 61.0 10.0 51 145-195 12-63 (605)
128 COG1116 TauB ABC-type nitrate/ 97.3 0.00078 1.7E-08 55.9 6.9 95 168-263 27-162 (248)
129 PTZ00361 26 proteosome regulat 97.3 0.00069 1.5E-08 61.6 7.1 48 148-195 182-242 (438)
130 cd03115 SRP The signal recogni 97.3 0.002 4.4E-08 50.9 9.1 24 172-195 2-25 (173)
131 PRK08972 fliI flagellum-specif 97.3 0.0015 3.3E-08 59.0 9.1 88 169-260 161-263 (444)
132 PRK08927 fliI flagellum-specif 97.3 0.0023 4.9E-08 58.0 10.2 90 168-261 156-260 (442)
133 PRK05564 DNA polymerase III su 97.3 0.0019 4.1E-08 56.4 9.5 76 149-225 4-85 (313)
134 PRK14970 DNA polymerase III su 97.3 0.0027 5.8E-08 56.7 10.7 49 147-195 15-64 (367)
135 cd03246 ABCC_Protease_Secretio 97.3 0.0015 3.2E-08 51.9 8.1 28 168-195 26-53 (173)
136 cd03230 ABC_DR_subfamily_A Thi 97.3 0.0019 4E-08 51.3 8.7 27 168-194 24-50 (173)
137 PRK11248 tauB taurine transpor 97.3 0.0031 6.7E-08 53.4 10.5 26 169-194 26-51 (255)
138 PRK08533 flagellar accessory p 97.3 0.0026 5.7E-08 53.0 9.8 54 169-227 23-76 (230)
139 PRK06526 transposase; Provisio 97.3 0.00036 7.7E-09 59.0 4.6 27 169-195 97-123 (254)
140 PF08423 Rad51: Rad51; InterP 97.3 0.0031 6.8E-08 53.4 10.2 91 169-260 37-144 (256)
141 PLN00020 ribulose bisphosphate 97.3 0.0019 4E-08 57.0 9.0 29 168-196 146-174 (413)
142 KOG0062 ATPase component of AB 97.3 0.00081 1.7E-08 61.1 6.9 93 169-264 105-231 (582)
143 TIGR00362 DnaA chromosomal rep 97.3 0.0012 2.6E-08 59.8 8.2 75 170-260 136-210 (405)
144 PRK11247 ssuB aliphatic sulfon 97.3 0.0041 9E-08 52.7 11.0 27 168-194 36-62 (257)
145 COG0466 Lon ATP-dependent Lon 97.3 0.00072 1.6E-08 63.7 6.7 47 149-195 323-375 (782)
146 TIGR02238 recomb_DMC1 meiotic 97.3 0.0023 4.9E-08 55.8 9.5 93 168-261 94-203 (313)
147 PRK08903 DnaA regulatory inact 97.3 0.0013 2.8E-08 54.6 7.7 40 156-195 27-67 (227)
148 cd03266 ABC_NatA_sodium_export 97.2 0.0029 6.3E-08 52.0 9.7 26 169-194 30-55 (218)
149 TIGR03877 thermo_KaiC_1 KaiC d 97.2 0.0038 8.3E-08 52.2 10.5 87 168-260 19-137 (237)
150 TIGR02239 recomb_RAD51 DNA rep 97.2 0.0023 4.9E-08 55.9 9.4 93 168-261 94-203 (316)
151 PRK06002 fliI flagellum-specif 97.2 0.0018 4E-08 58.7 9.0 89 169-260 164-265 (450)
152 PRK06921 hypothetical protein; 97.2 0.0025 5.4E-08 54.3 9.4 39 169-208 116-154 (266)
153 PRK14974 cell division protein 97.2 0.0065 1.4E-07 53.4 12.2 56 169-227 139-196 (336)
154 TIGR02880 cbbX_cfxQ probable R 97.2 0.0027 5.9E-08 54.6 9.7 25 171-195 59-83 (284)
155 PTZ00185 ATPase alpha subunit; 97.2 0.0034 7.4E-08 57.6 10.6 94 168-261 187-301 (574)
156 TIGR00235 udk uridine kinase. 97.2 0.00032 6.9E-09 57.4 3.8 28 168-195 4-31 (207)
157 cd02025 PanK Pantothenate kina 97.2 0.0025 5.5E-08 52.7 9.1 24 172-195 1-24 (220)
158 PRK04301 radA DNA repair and r 97.2 0.0036 7.8E-08 54.7 10.6 93 168-261 100-210 (317)
159 PRK08691 DNA polymerase III su 97.2 0.0033 7.2E-08 59.9 10.9 50 146-195 13-63 (709)
160 PRK12727 flagellar biosynthesi 97.2 0.0019 4.2E-08 59.6 9.0 27 169-195 349-375 (559)
161 PRK13409 putative ATPase RIL; 97.2 0.0027 5.8E-08 60.2 10.3 95 169-265 364-487 (590)
162 PRK08149 ATP synthase SpaL; Va 97.2 0.0024 5.2E-08 57.8 9.5 90 168-261 149-253 (428)
163 cd01135 V_A-ATPase_B V/A-type 97.2 0.0042 9E-08 52.8 10.4 94 168-261 67-178 (276)
164 TIGR02868 CydC thiol reductant 97.2 0.0022 4.8E-08 60.1 9.7 27 168-194 359-385 (529)
165 TIGR01188 drrA daunorubicin re 97.2 0.0039 8.5E-08 54.1 10.6 27 168-194 17-43 (302)
166 cd03301 ABC_MalK_N The N-termi 97.2 0.0038 8.3E-08 51.1 10.1 26 169-194 25-50 (213)
167 PRK12597 F0F1 ATP synthase sub 97.2 0.0026 5.5E-08 58.1 9.6 92 168-260 141-248 (461)
168 PF00485 PRK: Phosphoribulokin 97.2 0.00035 7.6E-09 56.6 3.7 24 172-195 1-24 (194)
169 PLN03187 meiotic recombination 97.2 0.0028 6.2E-08 55.8 9.6 92 169-261 125-233 (344)
170 TIGR00554 panK_bact pantothena 97.2 0.0016 3.6E-08 56.0 7.9 28 168-195 60-87 (290)
171 PRK07994 DNA polymerase III su 97.2 0.0031 6.7E-08 60.0 10.4 50 146-195 13-63 (647)
172 PRK09544 znuC high-affinity zi 97.2 0.0036 7.9E-08 52.8 10.0 94 168-264 28-153 (251)
173 PRK00771 signal recognition pa 97.2 0.0069 1.5E-07 55.2 12.3 86 169-258 94-184 (437)
174 PRK09270 nucleoside triphospha 97.2 0.00074 1.6E-08 56.2 5.7 37 159-195 21-58 (229)
175 PTZ00035 Rad51 protein; Provis 97.2 0.0038 8.2E-08 55.0 10.3 93 168-261 116-225 (337)
176 PRK14954 DNA polymerase III su 97.2 0.0033 7.2E-08 59.6 10.5 51 146-196 13-64 (620)
177 PF05659 RPW8: Arabidopsis bro 97.2 0.0048 1E-07 47.6 9.6 112 2-123 3-114 (147)
178 PRK14087 dnaA chromosomal repl 97.2 0.0013 2.9E-08 60.2 7.7 77 170-260 141-217 (450)
179 PF00308 Bac_DnaA: Bacterial d 97.2 0.0021 4.6E-08 53.1 8.2 39 169-207 33-71 (219)
180 PRK09183 transposase/IS protei 97.2 0.0017 3.7E-08 55.1 7.8 27 169-195 101-127 (259)
181 PRK05480 uridine/cytidine kina 97.2 0.00042 9E-09 56.8 4.0 27 168-194 4-30 (209)
182 cd03228 ABCC_MRP_Like The MRP 97.2 0.0034 7.4E-08 49.7 9.1 28 168-195 26-53 (171)
183 TIGR00959 ffh signal recogniti 97.2 0.0043 9.3E-08 56.3 10.7 26 169-194 98-123 (428)
184 PTZ00301 uridine kinase; Provi 97.2 0.00072 1.6E-08 55.5 5.2 26 170-195 3-28 (210)
185 TIGR02236 recomb_radA DNA repa 97.2 0.0046 1E-07 53.9 10.6 92 169-261 94-204 (310)
186 cd01394 radB RadB. The archaea 97.2 0.0032 6.9E-08 51.8 9.1 88 168-260 17-114 (218)
187 PRK15064 ABC transporter ATP-b 97.2 0.0031 6.8E-08 59.1 10.1 27 168-194 25-51 (530)
188 PRK06547 hypothetical protein; 97.2 0.00081 1.7E-08 53.4 5.2 33 163-195 8-40 (172)
189 TIGR01359 UMP_CMP_kin_fam UMP- 97.2 0.0022 4.9E-08 51.1 7.9 24 172-195 1-24 (183)
190 PRK07594 type III secretion sy 97.1 0.0023 5E-08 57.9 8.7 89 168-260 153-256 (433)
191 PRK15056 manganese/iron transp 97.1 0.0043 9.4E-08 53.0 10.1 26 169-194 32-57 (272)
192 PRK14952 DNA polymerase III su 97.1 0.0037 8E-08 58.9 10.3 49 147-195 11-60 (584)
193 TIGR03498 FliI_clade3 flagella 97.1 0.002 4.3E-08 58.2 8.2 90 168-261 138-242 (418)
194 TIGR02397 dnaX_nterm DNA polym 97.1 0.005 1.1E-07 54.5 10.8 49 147-195 12-61 (355)
195 PRK10636 putative ABC transpor 97.1 0.0032 6.9E-08 60.4 10.0 96 168-264 336-463 (638)
196 COG1102 Cmk Cytidylate kinase 97.1 0.0018 3.8E-08 50.3 6.6 44 172-228 2-45 (179)
197 cd01136 ATPase_flagellum-secre 97.1 0.0038 8.2E-08 54.6 9.5 89 168-260 67-170 (326)
198 KOG0744 AAA+-type ATPase [Post 97.1 0.0015 3.2E-08 56.2 6.7 81 170-260 177-261 (423)
199 PF00154 RecA: recA bacterial 97.1 0.0044 9.5E-08 54.0 9.8 86 169-261 52-143 (322)
200 TIGR03305 alt_F1F0_F1_bet alte 97.1 0.0046 1E-07 56.2 10.3 92 168-260 136-243 (449)
201 PRK13537 nodulation ABC transp 97.1 0.0047 1E-07 53.7 10.2 27 169-195 32-58 (306)
202 PRK13409 putative ATPase RIL; 97.1 0.0031 6.8E-08 59.8 9.7 27 168-194 97-123 (590)
203 PRK11650 ugpC glycerol-3-phosp 97.1 0.0051 1.1E-07 54.7 10.5 26 169-194 29-54 (356)
204 PRK10867 signal recognition pa 97.1 0.0053 1.1E-07 55.8 10.7 27 169-195 99-125 (433)
205 PRK06067 flagellar accessory p 97.1 0.0061 1.3E-07 50.8 10.4 87 168-259 23-130 (234)
206 PF00006 ATP-synt_ab: ATP synt 97.1 0.0044 9.5E-08 51.0 9.3 87 169-259 14-115 (215)
207 PRK14964 DNA polymerase III su 97.1 0.0058 1.3E-07 56.3 11.0 49 146-194 10-59 (491)
208 TIGR01243 CDC48 AAA family ATP 97.1 0.0024 5.2E-08 62.2 9.0 48 148-195 177-237 (733)
209 PRK14721 flhF flagellar biosyn 97.1 0.0048 1E-07 55.7 10.2 25 169-193 190-214 (420)
210 COG0468 RecA RecA/RadA recombi 97.1 0.0043 9.4E-08 52.9 9.4 92 168-263 58-155 (279)
211 PLN03186 DNA repair protein RA 97.1 0.0033 7.1E-08 55.4 8.9 92 168-260 121-229 (342)
212 COG1119 ModF ABC-type molybden 97.1 0.0021 4.6E-08 53.2 7.2 95 169-264 56-204 (257)
213 PRK05922 type III secretion sy 97.1 0.0045 9.8E-08 56.1 10.0 89 168-260 155-258 (434)
214 cd00267 ABC_ATPase ABC (ATP-bi 97.1 0.0021 4.6E-08 50.0 7.1 27 169-195 24-50 (157)
215 KOG1532 GTPase XAB1, interacts 97.1 0.0044 9.6E-08 52.2 9.0 63 168-230 17-88 (366)
216 PRK10636 putative ABC transpor 97.1 0.0036 7.9E-08 60.0 9.9 27 168-194 25-51 (638)
217 PRK11147 ABC transporter ATPas 97.1 0.0038 8.3E-08 59.8 10.1 27 168-194 27-53 (635)
218 PRK14950 DNA polymerase III su 97.1 0.003 6.4E-08 59.9 9.1 49 147-195 14-63 (585)
219 PRK06936 type III secretion sy 97.1 0.0034 7.4E-08 56.9 9.1 89 168-260 160-263 (439)
220 TIGR00763 lon ATP-dependent pr 97.1 0.0031 6.8E-08 61.8 9.4 46 150-195 321-372 (775)
221 cd03233 ABC_PDR_domain1 The pl 97.1 0.0069 1.5E-07 49.3 10.2 28 168-195 31-58 (202)
222 PRK00149 dnaA chromosomal repl 97.1 0.0021 4.5E-08 59.0 7.8 39 170-208 148-186 (450)
223 PRK07667 uridine kinase; Provi 97.1 0.001 2.2E-08 53.9 5.1 37 159-195 4-42 (193)
224 PRK13647 cbiO cobalt transport 97.1 0.0061 1.3E-07 52.1 10.2 27 168-194 29-55 (274)
225 PRK06995 flhF flagellar biosyn 97.1 0.004 8.6E-08 57.2 9.4 26 170-195 256-281 (484)
226 COG1131 CcmA ABC-type multidru 97.1 0.0061 1.3E-07 52.7 10.2 93 169-264 30-169 (293)
227 PRK06835 DNA replication prote 97.1 0.076 1.6E-06 46.7 17.1 37 170-208 183-219 (329)
228 PRK11000 maltose/maltodextrin 97.0 0.0053 1.2E-07 54.8 10.0 26 169-194 28-53 (369)
229 PRK08233 hypothetical protein; 97.0 0.0006 1.3E-08 54.2 3.7 26 170-195 3-28 (182)
230 TIGR01425 SRP54_euk signal rec 97.0 0.11 2.5E-06 47.1 18.4 27 169-195 99-125 (429)
231 COG1419 FlhF Flagellar GTP-bin 97.0 0.0082 1.8E-07 53.5 10.9 39 156-194 185-228 (407)
232 PRK15439 autoinducer 2 ABC tra 97.0 0.0063 1.4E-07 56.8 10.9 94 168-264 35-173 (510)
233 PRK09280 F0F1 ATP synthase sub 97.0 0.0048 1E-07 56.3 9.7 92 168-260 142-249 (463)
234 KOG0066 eIF2-interacting prote 97.0 0.0011 2.4E-08 59.2 5.4 97 169-265 612-738 (807)
235 PRK07764 DNA polymerase III su 97.0 0.0042 9.1E-08 60.9 9.9 49 147-195 13-62 (824)
236 COG0563 Adk Adenylate kinase a 97.0 0.0014 3.1E-08 52.3 5.7 25 172-196 2-26 (178)
237 PF13238 AAA_18: AAA domain; P 97.0 0.00061 1.3E-08 50.7 3.4 22 173-194 1-22 (129)
238 COG1245 Predicted ATPase, RNas 97.0 0.0022 4.8E-08 57.7 7.2 96 169-265 366-489 (591)
239 PRK05688 fliI flagellum-specif 97.0 0.0043 9.3E-08 56.4 9.3 88 169-260 167-269 (451)
240 PRK07940 DNA polymerase III su 97.0 0.0059 1.3E-07 54.9 10.1 47 148-194 4-60 (394)
241 cd03283 ABC_MutS-like MutS-lik 97.0 0.0057 1.2E-07 49.8 9.2 24 171-194 26-49 (199)
242 PRK11819 putative ABC transpor 97.0 0.0048 1E-07 58.2 9.9 28 168-195 31-58 (556)
243 PRK09536 btuD corrinoid ABC tr 97.0 0.0078 1.7E-07 54.3 10.8 27 168-194 27-53 (402)
244 CHL00195 ycf46 Ycf46; Provisio 97.0 0.0043 9.3E-08 57.3 9.3 48 148-195 227-284 (489)
245 PF07728 AAA_5: AAA domain (dy 97.0 0.0022 4.7E-08 48.8 6.3 42 173-219 2-43 (139)
246 TIGR03740 galliderm_ABC gallid 97.0 0.0084 1.8E-07 49.5 10.3 27 168-194 24-50 (223)
247 PRK13648 cbiO cobalt transport 97.0 0.0084 1.8E-07 51.1 10.6 27 168-194 33-59 (269)
248 TIGR03771 anch_rpt_ABC anchore 97.0 0.0064 1.4E-07 50.3 9.6 26 169-194 5-30 (223)
249 PRK04328 hypothetical protein; 97.0 0.0058 1.3E-07 51.5 9.5 87 168-259 21-138 (249)
250 TIGR03522 GldA_ABC_ATP gliding 97.0 0.0073 1.6E-07 52.4 10.3 27 168-194 26-52 (301)
251 PRK11889 flhF flagellar biosyn 97.0 0.0062 1.3E-07 54.4 9.8 27 169-195 240-266 (436)
252 COG0467 RAD55 RecA-superfamily 97.0 0.0071 1.5E-07 51.3 10.0 88 168-260 21-135 (260)
253 PRK13543 cytochrome c biogenes 97.0 0.0065 1.4E-07 49.9 9.4 27 168-194 35-61 (214)
254 PRK12422 chromosomal replicati 97.0 0.0033 7.2E-08 57.5 8.3 26 170-195 141-166 (445)
255 PRK11144 modC molybdate transp 97.0 0.0098 2.1E-07 52.8 11.1 26 169-194 23-48 (352)
256 cd01132 F1_ATPase_alpha F1 ATP 97.0 0.0073 1.6E-07 51.3 9.7 90 169-261 68-173 (274)
257 cd02023 UMPK Uridine monophosp 97.0 0.00059 1.3E-08 55.4 3.0 23 172-194 1-23 (198)
258 KOG0730 AAA+-type ATPase [Post 97.0 0.0036 7.9E-08 58.5 8.3 48 148-195 433-493 (693)
259 COG4618 ArpD ABC-type protease 97.0 0.0033 7.2E-08 57.2 7.8 27 168-194 360-386 (580)
260 PF13671 AAA_33: AAA domain; P 97.0 0.00083 1.8E-08 51.2 3.6 23 172-194 1-23 (143)
261 PRK14723 flhF flagellar biosyn 96.9 0.0093 2E-07 57.6 11.1 58 170-228 185-244 (767)
262 PRK14953 DNA polymerase III su 96.9 0.01 2.2E-07 54.9 11.2 49 147-195 14-63 (486)
263 COG4136 ABC-type uncharacteriz 96.9 0.0045 9.8E-08 47.6 7.3 38 169-206 27-64 (213)
264 TIGR01039 atpD ATP synthase, F 96.9 0.0078 1.7E-07 54.8 10.0 93 168-261 141-249 (461)
265 KOG0734 AAA+-type ATPase conta 96.9 0.002 4.3E-08 59.0 6.1 49 148-196 303-363 (752)
266 PRK07196 fliI flagellum-specif 96.9 0.0025 5.3E-08 57.8 6.8 90 168-261 153-257 (434)
267 PRK11147 ABC transporter ATPas 96.9 0.0077 1.7E-07 57.8 10.6 94 168-264 343-473 (635)
268 PRK10938 putative molybdenum t 96.9 0.0085 1.8E-07 55.6 10.6 27 168-194 27-53 (490)
269 cd02019 NK Nucleoside/nucleoti 96.9 0.00093 2E-08 44.5 3.1 23 172-194 1-23 (69)
270 PRK15455 PrkA family serine pr 96.9 0.0013 2.9E-08 61.1 5.1 48 148-195 75-128 (644)
271 TIGR00064 ftsY signal recognit 96.9 0.011 2.4E-07 50.6 10.5 28 168-195 70-97 (272)
272 PRK09111 DNA polymerase III su 96.9 0.0069 1.5E-07 57.4 10.0 49 147-195 22-71 (598)
273 COG1136 SalX ABC-type antimicr 96.9 0.0022 4.9E-08 52.9 6.0 93 168-264 29-175 (226)
274 PRK09099 type III secretion sy 96.9 0.0047 1E-07 56.1 8.6 89 168-260 161-264 (441)
275 cd01131 PilT Pilus retraction 96.9 0.0026 5.6E-08 51.7 6.3 25 171-195 2-26 (198)
276 TIGR03496 FliI_clade1 flagella 96.9 0.0054 1.2E-07 55.4 8.9 89 168-260 135-238 (411)
277 COG4555 NatA ABC-type Na+ tran 96.9 0.0065 1.4E-07 49.0 8.3 28 168-195 26-53 (245)
278 PTZ00088 adenylate kinase 1; P 96.9 0.0012 2.6E-08 55.0 4.3 25 171-195 7-31 (229)
279 PRK11819 putative ABC transpor 96.9 0.0084 1.8E-07 56.6 10.5 94 168-264 348-478 (556)
280 cd03213 ABCG_EPDR ABCG transpo 96.9 0.009 2E-07 48.3 9.4 94 168-264 33-144 (194)
281 PRK09087 hypothetical protein; 96.9 0.013 2.8E-07 48.7 10.4 26 169-194 43-68 (226)
282 TIGR03796 NHPM_micro_ABC1 NHPM 96.9 0.0092 2E-07 58.0 11.0 27 168-194 503-529 (710)
283 PRK06762 hypothetical protein; 96.9 0.001 2.2E-08 52.3 3.6 25 170-194 2-26 (166)
284 COG4619 ABC-type uncharacteriz 96.9 0.0059 1.3E-07 47.9 7.6 28 168-195 27-54 (223)
285 cd03281 ABC_MSH5_euk MutS5 hom 96.9 0.00088 1.9E-08 55.1 3.4 24 170-193 29-52 (213)
286 COG0194 Gmk Guanylate kinase [ 96.9 0.0064 1.4E-07 48.4 8.0 25 170-194 4-28 (191)
287 PRK04296 thymidine kinase; Pro 96.9 0.0021 4.5E-08 51.9 5.5 82 171-258 3-87 (190)
288 TIGR01360 aden_kin_iso1 adenyl 96.9 0.001 2.3E-08 53.2 3.7 26 169-194 2-27 (188)
289 PRK13536 nodulation factor exp 96.9 0.012 2.5E-07 52.1 10.6 27 168-194 65-91 (340)
290 PRK15064 ABC transporter ATP-b 96.9 0.01 2.2E-07 55.7 10.7 96 168-264 343-471 (530)
291 TIGR01040 V-ATPase_V1_B V-type 96.9 0.0088 1.9E-07 54.4 9.8 94 168-261 139-259 (466)
292 PRK06793 fliI flagellum-specif 96.9 0.0052 1.1E-07 55.7 8.4 90 168-261 154-258 (432)
293 PRK11432 fbpC ferric transport 96.9 0.012 2.6E-07 52.2 10.6 27 168-194 30-56 (351)
294 PRK12724 flagellar biosynthesi 96.9 0.0065 1.4E-07 54.7 8.8 25 170-194 223-247 (432)
295 PRK10522 multidrug transporter 96.9 0.011 2.5E-07 55.6 11.0 94 168-264 347-482 (547)
296 cd01124 KaiC KaiC is a circadi 96.9 0.011 2.3E-07 47.2 9.4 45 172-220 1-45 (187)
297 TIGR01243 CDC48 AAA family ATP 96.9 0.0084 1.8E-07 58.5 10.3 47 149-195 453-512 (733)
298 KOG0991 Replication factor C, 96.9 0.0057 1.2E-07 50.4 7.6 47 148-194 26-72 (333)
299 PRK00279 adk adenylate kinase; 96.8 0.0092 2E-07 49.1 9.2 24 172-195 2-25 (215)
300 COG0542 clpA ATP-binding subun 96.8 0.12 2.6E-06 50.1 17.6 102 150-261 492-605 (786)
301 PRK14527 adenylate kinase; Pro 96.8 0.0034 7.3E-08 50.7 6.4 28 168-195 4-31 (191)
302 TIGR02030 BchI-ChlI magnesium 96.8 0.0024 5.2E-08 56.2 5.9 48 147-194 2-49 (337)
303 COG0572 Udk Uridine kinase [Nu 96.8 0.0012 2.5E-08 54.1 3.6 28 169-196 7-34 (218)
304 PLN03073 ABC transporter F fam 96.8 0.01 2.3E-07 57.5 10.7 94 168-264 533-660 (718)
305 PRK06217 hypothetical protein; 96.8 0.0033 7.2E-08 50.3 6.2 36 171-207 2-39 (183)
306 TIGR03265 PhnT2 putative 2-ami 96.8 0.011 2.4E-07 52.5 10.0 27 169-195 29-55 (353)
307 PRK05703 flhF flagellar biosyn 96.8 0.0049 1.1E-07 56.0 7.9 25 170-194 221-245 (424)
308 COG1373 Predicted ATPase (AAA+ 96.8 0.0074 1.6E-07 54.5 9.0 89 154-265 22-110 (398)
309 PRK13545 tagH teichoic acids e 96.8 0.014 3.1E-07 54.1 10.8 96 168-264 48-176 (549)
310 PRK10536 hypothetical protein; 96.8 0.0084 1.8E-07 50.5 8.5 55 148-204 54-108 (262)
311 KOG0735 AAA+-type ATPase [Post 96.8 0.0059 1.3E-07 57.7 8.3 75 169-261 430-506 (952)
312 PRK12678 transcription termina 96.8 0.0065 1.4E-07 56.6 8.4 88 168-259 414-513 (672)
313 PRK03839 putative kinase; Prov 96.8 0.0013 2.8E-08 52.5 3.6 24 172-195 2-25 (180)
314 COG3839 MalK ABC-type sugar tr 96.8 0.0093 2E-07 52.3 9.1 27 168-194 27-53 (338)
315 PRK11607 potG putrescine trans 96.8 0.012 2.7E-07 52.7 10.1 26 169-194 44-69 (377)
316 COG3840 ThiQ ABC-type thiamine 96.8 0.015 3.2E-07 46.3 9.2 92 168-263 23-161 (231)
317 PRK14965 DNA polymerase III su 96.8 0.012 2.6E-07 55.7 10.5 49 147-195 14-63 (576)
318 TIGR02639 ClpA ATP-dependent C 96.8 0.006 1.3E-07 59.4 8.7 44 151-194 456-508 (731)
319 KOG0733 Nuclear AAA ATPase (VC 96.8 0.0073 1.6E-07 56.2 8.5 72 170-261 545-616 (802)
320 TIGR03258 PhnT 2-aminoethylpho 96.8 0.012 2.7E-07 52.4 9.9 26 169-194 30-55 (362)
321 PRK06820 type III secretion sy 96.8 0.0075 1.6E-07 54.8 8.6 90 168-261 161-265 (440)
322 PRK11174 cysteine/glutathione 96.8 0.007 1.5E-07 57.5 8.9 27 168-194 374-400 (588)
323 CHL00081 chlI Mg-protoporyphyr 96.8 0.0024 5.3E-08 56.3 5.4 50 146-195 14-63 (350)
324 TIGR00958 3a01208 Conjugate Tr 96.8 0.01 2.2E-07 57.7 10.2 28 168-195 505-532 (711)
325 TIGR03497 FliI_clade2 flagella 96.8 0.0093 2E-07 53.9 9.1 89 168-260 135-238 (413)
326 PRK10787 DNA-binding ATP-depen 96.8 0.0032 7E-08 61.5 6.6 47 149-195 322-374 (784)
327 PRK07721 fliI flagellum-specif 96.8 0.011 2.3E-07 54.0 9.5 89 168-260 156-259 (438)
328 TIGR02546 III_secr_ATP type II 96.8 0.012 2.6E-07 53.5 9.8 89 168-260 143-246 (422)
329 PF03205 MobB: Molybdopterin g 96.7 0.0016 3.4E-08 49.9 3.6 39 171-210 1-39 (140)
330 COG1117 PstB ABC-type phosphat 96.7 0.025 5.5E-07 46.1 10.5 25 168-192 31-55 (253)
331 PRK10865 protein disaggregatio 96.7 0.0079 1.7E-07 59.5 9.2 45 150-194 569-622 (857)
332 TIGR03797 NHPM_micro_ABC2 NHPM 96.7 0.016 3.4E-07 56.2 11.2 27 168-194 477-503 (686)
333 TIGR03263 guanyl_kin guanylate 96.7 0.0013 2.8E-08 52.4 3.1 23 171-193 2-24 (180)
334 TIGR00678 holB DNA polymerase 96.7 0.021 4.5E-07 45.8 10.2 36 160-195 3-39 (188)
335 KOG1969 DNA replication checkp 96.7 0.005 1.1E-07 58.3 7.2 52 169-225 325-376 (877)
336 TIGR02322 phosphon_PhnN phosph 96.7 0.0015 3.2E-08 52.1 3.4 25 171-195 2-26 (179)
337 COG4988 CydD ABC-type transpor 96.7 0.0081 1.8E-07 55.6 8.4 96 168-265 345-490 (559)
338 COG2274 SunT ABC-type bacterio 96.7 0.0069 1.5E-07 58.4 8.4 27 168-194 497-523 (709)
339 TIGR03719 ABC_ABC_ChvD ATP-bin 96.7 0.015 3.2E-07 54.9 10.6 94 168-264 346-476 (552)
340 cd03243 ABC_MutS_homologs The 96.7 0.0013 2.9E-08 53.6 3.1 24 170-193 29-52 (202)
341 PF12061 DUF3542: Protein of u 96.7 0.017 3.6E-07 49.5 9.5 99 8-120 300-401 (402)
342 COG1618 Predicted nucleotide k 96.7 0.0026 5.7E-08 49.3 4.3 28 170-197 5-32 (179)
343 PRK12726 flagellar biosynthesi 96.7 0.012 2.6E-07 52.4 9.0 57 169-227 205-262 (407)
344 TIGR03346 chaperone_ClpB ATP-d 96.7 0.0059 1.3E-07 60.5 7.9 47 149-195 565-620 (852)
345 cd02027 APSK Adenosine 5'-phos 96.7 0.0088 1.9E-07 46.3 7.4 24 172-195 1-24 (149)
346 PF06745 KaiC: KaiC; InterPro 96.7 0.0076 1.7E-07 49.9 7.5 87 168-259 17-125 (226)
347 PRK13657 cyclic beta-1,2-gluca 96.7 0.01 2.2E-07 56.4 9.3 27 168-194 359-385 (588)
348 PRK08472 fliI flagellum-specif 96.7 0.01 2.2E-07 53.8 8.8 89 168-260 155-257 (434)
349 TIGR03881 KaiC_arch_4 KaiC dom 96.7 0.028 6E-07 46.6 10.8 88 168-260 18-132 (229)
350 cd03217 ABC_FeS_Assembly ABC-t 96.7 0.0088 1.9E-07 48.6 7.7 25 169-193 25-49 (200)
351 PRK10078 ribose 1,5-bisphospho 96.7 0.0015 3.3E-08 52.4 3.1 24 171-194 3-26 (186)
352 PRK09452 potA putrescine/sperm 96.7 0.017 3.8E-07 51.7 10.1 27 169-195 39-65 (375)
353 PRK00300 gmk guanylate kinase; 96.6 0.0019 4.2E-08 52.5 3.7 26 169-194 4-29 (205)
354 PRK14737 gmk guanylate kinase; 96.6 0.0057 1.2E-07 49.2 6.4 26 169-194 3-28 (186)
355 PRK10463 hydrogenase nickel in 96.6 0.038 8.2E-07 47.5 11.6 35 161-195 95-129 (290)
356 PRK00131 aroK shikimate kinase 96.6 0.0022 4.8E-08 50.5 3.9 27 169-195 3-29 (175)
357 PRK12723 flagellar biosynthesi 96.6 0.0095 2E-07 53.4 8.2 27 169-195 173-199 (388)
358 cd02024 NRK1 Nicotinamide ribo 96.6 0.0016 3.5E-08 52.4 3.1 23 172-194 1-23 (187)
359 KOG0927 Predicted transporter 96.6 0.0066 1.4E-07 55.7 7.2 26 169-194 100-125 (614)
360 TIGR01026 fliI_yscN ATPase Fli 96.6 0.013 2.7E-07 53.5 9.1 89 168-260 161-264 (440)
361 COG2019 AdkA Archaeal adenylat 96.6 0.011 2.3E-07 46.3 7.3 46 170-227 4-49 (189)
362 PRK10751 molybdopterin-guanine 96.6 0.0022 4.8E-08 50.8 3.7 27 169-195 5-31 (173)
363 PRK04040 adenylate kinase; Pro 96.6 0.0021 4.5E-08 51.8 3.6 26 170-195 2-27 (188)
364 PRK10416 signal recognition pa 96.6 0.024 5.1E-07 49.6 10.4 27 169-195 113-139 (318)
365 TIGR01041 ATP_syn_B_arch ATP s 96.6 0.023 4.9E-07 52.0 10.6 92 169-260 140-249 (458)
366 cd01134 V_A-ATPase_A V/A-type 96.6 0.03 6.5E-07 49.3 10.8 88 168-259 155-264 (369)
367 TIGR03574 selen_PSTK L-seryl-t 96.6 0.0063 1.4E-07 51.2 6.6 24 172-195 1-24 (249)
368 PRK14959 DNA polymerase III su 96.6 0.016 3.6E-07 54.8 9.9 49 147-195 14-63 (624)
369 PRK09519 recA DNA recombinatio 96.6 0.014 2.9E-07 56.7 9.5 86 169-261 59-150 (790)
370 PRK10790 putative multidrug tr 96.6 0.016 3.4E-07 55.1 10.0 28 168-195 365-392 (592)
371 PRK07133 DNA polymerase III su 96.6 0.018 3.8E-07 55.5 10.1 49 147-195 16-65 (725)
372 PF05970 PIF1: PIF1-like helic 96.6 0.0064 1.4E-07 54.2 6.9 40 157-196 9-48 (364)
373 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.6 0.0021 4.5E-08 52.9 3.5 27 168-194 28-54 (218)
374 TIGR03324 alt_F1F0_F1_al alter 96.6 0.025 5.3E-07 52.1 10.6 89 169-261 161-266 (497)
375 COG2884 FtsE Predicted ATPase 96.6 0.014 3.1E-07 46.7 7.9 29 168-196 26-54 (223)
376 cd01121 Sms Sms (bacterial rad 96.6 0.0076 1.7E-07 53.8 7.3 83 169-260 81-169 (372)
377 PRK11176 lipid transporter ATP 96.6 0.016 3.4E-07 55.0 9.9 28 168-195 367-394 (582)
378 PRK00889 adenylylsulfate kinas 96.6 0.0024 5.2E-08 50.7 3.8 27 169-195 3-29 (175)
379 cd03225 ABC_cobalt_CbiO_domain 96.6 0.0021 4.6E-08 52.6 3.5 27 168-194 25-51 (211)
380 TIGR01193 bacteriocin_ABC ABC- 96.6 0.023 5.1E-07 55.2 11.2 27 168-194 498-524 (708)
381 CHL00059 atpA ATP synthase CF1 96.6 0.018 3.9E-07 52.7 9.6 90 168-261 139-245 (485)
382 PRK14948 DNA polymerase III su 96.6 0.027 5.8E-07 53.7 11.1 48 148-195 15-63 (620)
383 KOG2228 Origin recognition com 96.6 0.015 3.2E-07 50.6 8.4 110 148-259 23-147 (408)
384 cd02028 UMPK_like Uridine mono 96.5 0.002 4.2E-08 51.6 3.0 24 172-195 1-24 (179)
385 PRK07960 fliI flagellum-specif 96.5 0.0093 2E-07 54.2 7.6 90 168-261 173-277 (455)
386 TIGR01166 cbiO cobalt transpor 96.5 0.0024 5.1E-08 51.4 3.5 26 169-194 17-42 (190)
387 TIGR00954 3a01203 Peroxysomal 96.5 0.022 4.7E-07 54.9 10.6 27 168-194 476-502 (659)
388 TIGR00150 HI0065_YjeE ATPase, 96.5 0.0057 1.2E-07 46.3 5.3 28 169-196 21-48 (133)
389 cd02020 CMPK Cytidine monophos 96.5 0.0022 4.9E-08 48.9 3.2 24 172-195 1-24 (147)
390 TIGR00960 3a0501s02 Type II (G 96.5 0.0023 5.1E-08 52.6 3.5 27 168-194 27-53 (216)
391 COG1428 Deoxynucleoside kinase 96.5 0.0027 5.8E-08 51.5 3.6 26 170-195 4-29 (216)
392 PRK05642 DNA replication initi 96.5 0.0099 2.1E-07 49.6 7.2 38 170-209 45-82 (234)
393 PRK00625 shikimate kinase; Pro 96.5 0.0024 5.3E-08 50.7 3.4 24 172-195 2-25 (173)
394 cd00820 PEPCK_HprK Phosphoenol 96.5 0.0023 5E-08 46.5 2.9 23 169-191 14-36 (107)
395 CHL00060 atpB ATP synthase CF1 96.5 0.011 2.4E-07 54.2 8.0 93 168-261 159-274 (494)
396 PRK03846 adenylylsulfate kinas 96.5 0.0028 6E-08 51.5 3.8 28 167-194 21-48 (198)
397 cd01672 TMPK Thymidine monopho 96.5 0.0089 1.9E-07 48.0 6.8 24 172-195 2-25 (200)
398 PF00625 Guanylate_kin: Guanyl 96.5 0.0042 9.1E-08 49.7 4.8 36 170-207 2-37 (183)
399 PRK13765 ATP-dependent proteas 96.5 0.0071 1.5E-07 57.6 7.0 76 148-227 30-105 (637)
400 PF14516 AAA_35: AAA-like doma 96.5 0.079 1.7E-06 46.7 13.1 111 150-263 12-141 (331)
401 PRK14532 adenylate kinase; Pro 96.5 0.02 4.3E-07 45.9 8.7 22 173-194 3-24 (188)
402 cd03229 ABC_Class3 This class 96.5 0.0024 5.2E-08 50.9 3.2 26 169-194 25-50 (178)
403 PRK13949 shikimate kinase; Pro 96.5 0.0027 5.9E-08 50.2 3.5 25 171-195 2-26 (169)
404 TIGR00764 lon_rel lon-related 96.5 0.013 2.7E-07 55.9 8.5 76 148-227 17-92 (608)
405 PLN03130 ABC transporter C fam 96.5 0.023 5E-07 60.1 11.1 29 168-196 641-669 (1622)
406 cd00544 CobU Adenosylcobinamid 96.5 0.017 3.6E-07 45.7 7.9 82 172-259 1-83 (169)
407 PRK13343 F0F1 ATP synthase sub 96.5 0.02 4.4E-07 52.8 9.4 90 168-261 160-266 (502)
408 cd03261 ABC_Org_Solvent_Resist 96.5 0.0027 5.8E-08 52.9 3.5 27 168-194 24-50 (235)
409 TIGR02655 circ_KaiC circadian 96.5 0.018 3.9E-07 53.4 9.2 87 168-259 261-363 (484)
410 TIGR03375 type_I_sec_LssB type 96.5 0.022 4.7E-07 55.3 10.1 27 168-194 489-515 (694)
411 TIGR02858 spore_III_AA stage I 96.5 0.02 4.4E-07 48.8 8.7 29 167-195 108-136 (270)
412 TIGR02902 spore_lonB ATP-depen 96.5 0.0019 4.1E-08 60.5 2.7 48 147-194 63-110 (531)
413 TIGR00390 hslU ATP-dependent p 96.5 0.012 2.5E-07 53.1 7.5 46 150-195 13-72 (441)
414 TIGR02673 FtsE cell division A 96.5 0.0025 5.5E-08 52.2 3.2 27 168-194 26-52 (214)
415 PRK14971 DNA polymerase III su 96.4 0.033 7.1E-07 53.1 11.0 48 147-194 15-63 (614)
416 PF08433 KTI12: Chromatin asso 96.4 0.0079 1.7E-07 51.3 6.2 25 171-195 2-26 (270)
417 COG1223 Predicted ATPase (AAA+ 96.4 0.019 4.1E-07 48.3 8.1 49 148-196 120-177 (368)
418 PRK15177 Vi polysaccharide exp 96.4 0.0029 6.3E-08 52.0 3.5 26 169-194 12-37 (213)
419 cd00071 GMPK Guanosine monopho 96.4 0.0025 5.5E-08 48.6 2.9 23 172-194 1-23 (137)
420 PRK05057 aroK shikimate kinase 96.4 0.0033 7.2E-08 49.9 3.7 26 170-195 4-29 (172)
421 PRK09825 idnK D-gluconate kina 96.4 0.0029 6.4E-08 50.4 3.4 26 170-195 3-28 (176)
422 TIGR01351 adk adenylate kinase 96.4 0.022 4.7E-07 46.6 8.7 23 173-195 2-24 (210)
423 PRK05342 clpX ATP-dependent pr 96.4 0.01 2.2E-07 53.8 7.1 47 149-195 71-133 (412)
424 cd03259 ABC_Carb_Solutes_like 96.4 0.003 6.5E-08 51.8 3.5 27 168-194 24-50 (213)
425 cd00227 CPT Chloramphenicol (C 96.4 0.0034 7.4E-08 49.9 3.7 25 170-194 2-26 (175)
426 cd02021 GntK Gluconate kinase 96.4 0.0027 5.8E-08 49.0 3.0 23 172-194 1-23 (150)
427 PRK10584 putative ABC transpor 96.4 0.003 6.5E-08 52.4 3.5 27 168-194 34-60 (228)
428 cd03226 ABC_cobalt_CbiO_domain 96.4 0.003 6.4E-08 51.5 3.4 26 169-194 25-50 (205)
429 PRK09281 F0F1 ATP synthase sub 96.4 0.021 4.5E-07 52.9 9.2 89 169-261 161-266 (502)
430 PRK14086 dnaA chromosomal repl 96.4 0.015 3.2E-07 54.9 8.4 26 170-195 314-339 (617)
431 TIGR01313 therm_gnt_kin carboh 96.4 0.0025 5.3E-08 49.9 2.8 22 173-194 1-22 (163)
432 cd03297 ABC_ModC_molybdenum_tr 96.4 0.0029 6.2E-08 52.0 3.3 26 168-194 22-47 (214)
433 TIGR02315 ABC_phnC phosphonate 96.4 0.003 6.5E-08 52.9 3.5 27 168-194 26-52 (243)
434 PF12775 AAA_7: P-loop contain 96.4 0.0021 4.6E-08 54.9 2.6 35 159-194 23-57 (272)
435 TIGR03878 thermo_KaiC_2 KaiC d 96.4 0.026 5.6E-07 47.9 9.2 41 169-211 35-75 (259)
436 PRK08451 DNA polymerase III su 96.4 0.042 9.1E-07 51.3 11.2 49 146-194 11-60 (535)
437 KOG3347 Predicted nucleotide k 96.4 0.0076 1.6E-07 46.2 5.2 35 170-211 7-41 (176)
438 PF00910 RNA_helicase: RNA hel 96.4 0.0029 6.3E-08 46.0 2.9 23 173-195 1-23 (107)
439 TIGR03575 selen_PSTK_euk L-ser 96.4 0.02 4.3E-07 50.4 8.6 23 173-195 2-24 (340)
440 PRK11034 clpA ATP-dependent Cl 96.4 0.013 2.9E-07 57.0 8.2 44 151-194 460-512 (758)
441 PRK13695 putative NTPase; Prov 96.4 0.005 1.1E-07 48.9 4.5 24 172-195 2-25 (174)
442 cd03263 ABC_subfamily_A The AB 96.4 0.0032 6.9E-08 51.9 3.5 27 168-194 26-52 (220)
443 PRK04196 V-type ATP synthase s 96.4 0.031 6.8E-07 51.2 10.2 92 169-260 142-251 (460)
444 cd03260 ABC_PstB_phosphate_tra 96.4 0.0034 7.3E-08 52.0 3.6 27 168-194 24-50 (227)
445 PF13086 AAA_11: AAA domain; P 96.4 0.011 2.4E-07 48.6 6.7 63 159-223 8-75 (236)
446 PF08477 Miro: Miro-like prote 96.4 0.0034 7.3E-08 46.1 3.3 23 173-195 2-24 (119)
447 TIGR00041 DTMP_kinase thymidyl 96.4 0.051 1.1E-06 43.7 10.5 26 171-196 4-29 (195)
448 TIGR02640 gas_vesic_GvpN gas v 96.4 0.016 3.5E-07 49.2 7.8 57 155-218 8-64 (262)
449 PRK13541 cytochrome c biogenes 96.4 0.0033 7.3E-08 50.8 3.5 26 169-194 25-50 (195)
450 cd00464 SK Shikimate kinase (S 96.4 0.0033 7.1E-08 48.5 3.3 23 173-195 2-24 (154)
451 cd03265 ABC_DrrA DrrA is the A 96.4 0.0033 7.3E-08 51.8 3.6 26 169-194 25-50 (220)
452 COG0542 clpA ATP-binding subun 96.4 0.01 2.3E-07 57.2 7.2 103 148-262 169-275 (786)
453 TIGR00176 mobB molybdopterin-g 96.4 0.0059 1.3E-07 47.6 4.7 24 172-195 1-24 (155)
454 KOG0736 Peroxisome assembly fa 96.4 0.031 6.7E-07 53.5 10.1 94 148-261 671-776 (953)
455 TIGR02211 LolD_lipo_ex lipopro 96.4 0.0033 7.2E-08 51.8 3.5 27 168-194 29-55 (221)
456 cd03256 ABC_PhnC_transporter A 96.4 0.0033 7.1E-08 52.6 3.5 27 168-194 25-51 (241)
457 PRK13531 regulatory ATPase Rav 96.4 0.0068 1.5E-07 55.5 5.7 50 150-201 21-70 (498)
458 PRK11160 cysteine/glutathione 96.4 0.027 5.9E-07 53.4 10.1 27 168-194 364-390 (574)
459 PF00406 ADK: Adenylate kinase 96.4 0.011 2.5E-07 45.6 6.3 21 175-195 1-21 (151)
460 cd03296 ABC_CysA_sulfate_impor 96.4 0.0033 7.2E-08 52.6 3.5 27 168-194 26-52 (239)
461 cd03292 ABC_FtsE_transporter F 96.4 0.003 6.5E-08 51.8 3.2 27 168-194 25-51 (214)
462 smart00534 MUTSac ATPase domai 96.4 0.0018 3.9E-08 52.0 1.8 21 172-192 1-21 (185)
463 COG4152 ABC-type uncharacteriz 96.4 0.017 3.6E-07 48.1 7.4 28 168-195 26-53 (300)
464 cd03264 ABC_drug_resistance_li 96.4 0.0027 5.9E-08 51.9 2.9 23 172-194 27-49 (211)
465 COG1157 FliI Flagellar biosynt 96.4 0.031 6.7E-07 49.9 9.4 88 168-259 161-263 (441)
466 cd03257 ABC_NikE_OppD_transpor 96.3 0.0034 7.4E-08 51.9 3.4 27 168-194 29-55 (228)
467 TIGR03864 PQQ_ABC_ATP ABC tran 96.3 0.0036 7.8E-08 52.2 3.5 26 169-194 26-51 (236)
468 TIGR03608 L_ocin_972_ABC putat 96.3 0.0032 7E-08 51.3 3.2 26 169-194 23-48 (206)
469 PRK14528 adenylate kinase; Pro 96.3 0.011 2.5E-07 47.4 6.3 25 171-195 2-26 (186)
470 TIGR00962 atpA proton transloc 96.3 0.033 7.2E-07 51.6 10.0 90 168-261 159-265 (501)
471 TIGR02203 MsbA_lipidA lipid A 96.3 0.027 5.8E-07 53.3 9.8 27 168-194 356-382 (571)
472 TIGR00073 hypB hydrogenase acc 96.3 0.0045 9.8E-08 50.6 4.0 30 165-194 17-46 (207)
473 CHL00095 clpC Clp protease ATP 96.3 0.017 3.6E-07 57.1 8.6 46 149-194 509-563 (821)
474 PRK13538 cytochrome c biogenes 96.3 0.0038 8.2E-08 50.9 3.5 27 168-194 25-51 (204)
475 PRK13947 shikimate kinase; Pro 96.3 0.0037 7.9E-08 49.3 3.3 24 172-195 3-26 (171)
476 cd03224 ABC_TM1139_LivF_branch 96.3 0.0032 6.9E-08 51.9 3.1 26 169-194 25-50 (222)
477 PLN03232 ABC transporter C fam 96.3 0.028 6E-07 59.1 10.5 28 168-195 641-668 (1495)
478 PRK10789 putative multidrug tr 96.3 0.031 6.6E-07 53.0 10.1 27 168-194 339-365 (569)
479 TIGR01842 type_I_sec_PrtD type 96.3 0.025 5.4E-07 53.2 9.4 27 168-194 342-368 (544)
480 PF01583 APS_kinase: Adenylyls 96.3 0.0049 1.1E-07 48.0 3.9 27 170-196 2-28 (156)
481 KOG0729 26S proteasome regulat 96.3 0.022 4.9E-07 47.9 7.9 93 148-260 176-281 (435)
482 COG0464 SpoVK ATPases of the A 96.3 0.0067 1.4E-07 56.4 5.4 74 169-262 275-348 (494)
483 TIGR01194 cyc_pep_trnsptr cycl 96.3 0.016 3.4E-07 54.8 7.9 26 168-193 366-391 (555)
484 PRK14530 adenylate kinase; Pro 96.3 0.0041 8.9E-08 51.2 3.6 25 171-195 4-28 (215)
485 PRK13975 thymidylate kinase; P 96.3 0.0042 9.2E-08 50.1 3.6 25 171-195 3-27 (196)
486 cd03258 ABC_MetN_methionine_tr 96.3 0.0035 7.6E-08 52.1 3.2 27 168-194 29-55 (233)
487 COG0470 HolB ATPase involved i 96.3 0.041 8.8E-07 47.9 10.1 45 151-195 3-49 (325)
488 TIGR02857 CydD thiol reductant 96.3 0.024 5.3E-07 53.1 9.1 27 168-194 346-372 (529)
489 COG4167 SapF ABC-type antimicr 96.3 0.013 2.9E-07 46.6 6.1 25 169-193 38-62 (267)
490 PRK10247 putative ABC transpor 96.3 0.0041 9E-08 51.5 3.5 27 168-194 31-57 (225)
491 PRK02118 V-type ATP synthase s 96.3 0.04 8.6E-07 50.0 9.9 89 169-261 139-243 (436)
492 PRK11629 lolD lipoprotein tran 96.3 0.0041 8.9E-08 51.8 3.5 27 168-194 33-59 (233)
493 cd03218 ABC_YhbG The ABC trans 96.3 0.0037 7.9E-08 52.0 3.2 26 169-194 25-50 (232)
494 COG0237 CoaE Dephospho-CoA kin 96.3 0.019 4.2E-07 46.7 7.2 23 170-192 2-24 (201)
495 TIGR01184 ntrCD nitrate transp 96.3 0.0042 9.2E-08 51.6 3.5 27 169-195 10-36 (230)
496 cd03219 ABC_Mj1267_LivG_branch 96.3 0.0038 8.3E-08 52.0 3.3 26 169-194 25-50 (236)
497 PRK05439 pantothenate kinase; 96.2 0.024 5.3E-07 49.2 8.2 28 168-195 84-111 (311)
498 cd03262 ABC_HisP_GlnQ_permease 96.2 0.0045 9.8E-08 50.7 3.5 26 169-194 25-50 (213)
499 TIGR01192 chvA glucan exporter 96.2 0.034 7.3E-07 52.9 9.8 27 168-194 359-385 (585)
500 TIGR01978 sufC FeS assembly AT 96.2 0.0043 9.3E-08 51.9 3.4 26 168-193 24-49 (243)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=2.2e-31 Score=255.88 Aligned_cols=253 Identities=25% Similarity=0.377 Sum_probs=190.5
Q ss_pred chhhchHHHHHHHHhhhhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHhh
Q 045699 3 HFIFSIPAKVLGQLVGTIPGQLRNYKSNFADLKKKTEKLKLTIEDLQLWVDAAKENGEEIEQSVERWLISANTTVVEAGK 82 (266)
Q Consensus 3 e~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~el~~l~~~l~~i~~~l~~ae~~~~~~~~~~~~Wl~~vr~~a~d~ed 82 (266)
++.+++..+.+..++......+.+....+..++++|..|+++++++.+. ... ...+..|...+++++|++||
T Consensus 2 ~~~~s~~~~~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~-------~~~-~~~~~~~~e~~~~~~~~~e~ 73 (889)
T KOG4658|consen 2 GACVSFGVEKLDQLLNRESECLDGKDNYILELKENLKALQSALEDLDAK-------RDD-LERRVNWEEDVGDLVYLAED 73 (889)
T ss_pred CeEEEEehhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhh-------cch-HHHHHHHHHHHHHHHHHHHH
Confidence 4556666654455666666667888888888888888887777766553 332 56789999999999999999
Q ss_pred hHHH-HH---Hh-------------hcccccCCCC-ChhHHhHHHHHHHHHHHHHHHHhhcCCCcccccc-CCCCccccc
Q 045699 83 LIED-EE---KE-------------KKKCLKGLCP-NLMNRYQLSKKAAWEVKAIAGLLEEGKFDEVSFC-TRPEGILLM 143 (266)
Q Consensus 83 ~ld~-~~---~~-------------~~~~~~~~~~-~~~~~~~~~~~i~~~~~~i~~l~~~~~~~~~~~~-~~~~~~~~~ 143 (266)
+++. .. .. ++-|+.+++. +....+.+++++-++...++.+..+..|..+... .|.+....+
T Consensus 74 ~~~~~~v~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~ 153 (889)
T KOG4658|consen 74 IIWLFLVEEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETR 153 (889)
T ss_pred HHHHHHHHHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccC
Confidence 9987 10 00 0112222222 4445567778888888888887776666655432 111112111
Q ss_pred ccCCcccccchHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhc-cccCCCeEEEEEeCCCCCHHHHHHHHH
Q 045699 144 CSEGYEAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAK-KLKVCDEVVFVEVSRTPDVKRIQGDVA 222 (266)
Q Consensus 144 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~-~~~~f~~~~wv~v~~~~~~~~~~~~i~ 222 (266)
+..+... +|.+..++++.+.|.+++..++||+||||+||||||+.++|+.. ++++||.++||+||+.++...++.+|+
T Consensus 154 ~~~~~~~-VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il 232 (889)
T KOG4658|consen 154 PIQSESD-VGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTIL 232 (889)
T ss_pred CCCcccc-ccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHH
Confidence 1112223 99999999999999887779999999999999999999999988 889999999999999999999999999
Q ss_pred HHhcC---CCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCCCCCC
Q 045699 223 DQLSL---NICEGSESERAMMLCGQLKKGKKILFVLDNIWTSLDLE 265 (266)
Q Consensus 223 ~~~~~---~~~~~~~~~~~~~l~~~L~~~kr~LlvlDDvw~~~~~~ 265 (266)
+.++. .+......+++..|.+.|+. |||+|||||||+..||+
T Consensus 233 ~~l~~~~~~~~~~~~~~~~~~i~~~L~~-krfllvLDDIW~~~dw~ 277 (889)
T KOG4658|consen 233 ERLGLLDEEWEDKEEDELASKLLNLLEG-KRFLLVLDDIWEEVDWD 277 (889)
T ss_pred HHhccCCcccchhhHHHHHHHHHHHhcc-CceEEEEecccccccHH
Confidence 99887 33344457899999999998 99999999999999987
No 2
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.83 E-value=1.8e-20 Score=161.25 Aligned_cols=111 Identities=32% Similarity=0.478 Sum_probs=96.5
Q ss_pred hHHHHHHHHHHhCC--CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCC--
Q 045699 154 RKSILNDALDALSN--PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNI-- 229 (266)
Q Consensus 154 r~~~~~~l~~~l~~--~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~-- 229 (266)
|+.++++|.++|.+ ++.++|+|+||||+||||||+.++++...+.+|+.++|+.++...+...++..|+.+++...
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 67889999999976 78999999999999999999999999777789999999999999999999999999998863
Q ss_pred --CCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCCCCCC
Q 045699 230 --CEGSESERAMMLCGQLKKGKKILFVLDNIWTSLDLE 265 (266)
Q Consensus 230 --~~~~~~~~~~~l~~~L~~~kr~LlvlDDvw~~~~~~ 265 (266)
...+..+....+.+.|.+ ++|||||||||+...|+
T Consensus 81 ~~~~~~~~~~~~~l~~~L~~-~~~LlVlDdv~~~~~~~ 117 (287)
T PF00931_consen 81 ISDPKDIEELQDQLRELLKD-KRCLLVLDDVWDEEDLE 117 (287)
T ss_dssp SSCCSSHHHHHHHHHHHHCC-TSEEEEEEEE-SHHHH-
T ss_pred cccccccccccccchhhhcc-ccceeeeeeeccccccc
Confidence 345677889999999998 99999999999987663
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.50 E-value=1.1e-13 Score=139.22 Aligned_cols=113 Identities=20% Similarity=0.309 Sum_probs=79.1
Q ss_pred cccccchHHHHHHHHHHhC--CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEe---CCC-----------
Q 045699 148 YEAFESRKSILNDALDALS--NPNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEV---SRT----------- 211 (266)
Q Consensus 148 ~~~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v---~~~----------- 211 (266)
..+++|++..++++..+|. .++.++|+||||||+||||||+.+|+... .+|+..+|+.- +..
T Consensus 183 ~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~--~~F~g~vfv~~~~v~~~~~~~~~~~~~~ 260 (1153)
T PLN03210 183 FEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLS--RQFQSSVFIDRAFISKSMEIYSSANPDD 260 (1153)
T ss_pred cccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHh--hcCCeEEEeeccccccchhhcccccccc
Confidence 5678999999999998874 45789999999999999999999999765 67988887631 111
Q ss_pred CC-HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCCCCCC
Q 045699 212 PD-VKRIQGDVADQLSLNICEGSESERAMMLCGQLKKGKKILFVLDNIWTSLDLE 265 (266)
Q Consensus 212 ~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~L~~~kr~LlvlDDvw~~~~~~ 265 (266)
++ ...+++.++.++...... .... ...+++.|.+ ||+||||||||+...|+
T Consensus 261 ~~~~~~l~~~~l~~il~~~~~-~~~~-~~~~~~~L~~-krvLLVLDdv~~~~~l~ 312 (1153)
T PLN03210 261 YNMKLHLQRAFLSEILDKKDI-KIYH-LGAMEERLKH-RKVLIFIDDLDDQDVLD 312 (1153)
T ss_pred cchhHHHHHHHHHHHhCCCCc-ccCC-HHHHHHHHhC-CeEEEEEeCCCCHHHHH
Confidence 11 123444555444221111 1111 1456788888 99999999999876553
No 4
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.09 E-value=1.9e-09 Score=96.93 Aligned_cols=114 Identities=21% Similarity=0.160 Sum_probs=87.1
Q ss_pred cccccchHHHHHHHHHHhC----CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHH
Q 045699 148 YEAFESRKSILNDALDALS----NPNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVAD 223 (266)
Q Consensus 148 ~~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~ 223 (266)
+..+.||+.+++.|...+. +.....+.|+|+.|+|||++++.++++.......-..+++++....+...++..|++
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~ 108 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIAR 108 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHH
Confidence 4568999999999988873 334567889999999999999999998764332345677777777788899999999
Q ss_pred HhcC-CC--CCCCHHHHHHHHHHHHhc-CCeEEEEEeCCCCC
Q 045699 224 QLSL-NI--CEGSESERAMMLCGQLKK-GKKILFVLDNIWTS 261 (266)
Q Consensus 224 ~~~~-~~--~~~~~~~~~~~l~~~L~~-~kr~LlvlDDvw~~ 261 (266)
++.. .. ...+..++...+.+.+.. ++..+|||||++..
T Consensus 109 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l 150 (394)
T PRK00411 109 QLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYL 150 (394)
T ss_pred HhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHh
Confidence 9865 22 233566777778888764 35688999999864
No 5
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.03 E-value=7.2e-10 Score=93.07 Aligned_cols=92 Identities=18% Similarity=0.140 Sum_probs=65.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCC--CCHHHHHHHHHHHhcC-CCCCCCHH------HHH
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRT--PDVKRIQGDVADQLSL-NICEGSES------ERA 238 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~--~~~~~~~~~i~~~~~~-~~~~~~~~------~~~ 238 (266)
.....++|+|++|+|||||++.+|+..... +|+.++|+++++. +++.++++.|...+-. ..+..... ...
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~ 92 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVL 92 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHH
Confidence 356899999999999999999999998654 8999999998877 7899999988332211 11211111 112
Q ss_pred HHHHHHHhcCCeEEEEEeCCCC
Q 045699 239 MMLCGQLKKGKKILFVLDNIWT 260 (266)
Q Consensus 239 ~~l~~~L~~~kr~LlvlDDvw~ 260 (266)
.....+...|++.+|++|++..
T Consensus 93 ~~a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 93 EKAKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHHHCCCCEEEEEECHHH
Confidence 2222223336999999999864
No 6
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.02 E-value=4.6e-09 Score=93.48 Aligned_cols=114 Identities=22% Similarity=0.237 Sum_probs=84.6
Q ss_pred cccccchHHHHHHHHHHhC----CCCCcEEEEEcCCCCcHHHHHHHHHHHhcccc-CC---CeEEEEEeCCCCCHHHHHH
Q 045699 148 YEAFESRKSILNDALDALS----NPNVDVIGLCGVGGIGKTTLAKIVCDQAKKLK-VC---DEVVFVEVSRTPDVKRIQG 219 (266)
Q Consensus 148 ~~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~-~f---~~~~wv~v~~~~~~~~~~~ 219 (266)
+..++||+.+++.|..++. ......+.|+|+.|+|||++++.+++...... .. -..+|+.+....+...++.
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~ 93 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLV 93 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHH
Confidence 4578999999999988874 34456899999999999999999999764211 11 2456778777778889999
Q ss_pred HHHHHhc---CCCC--CCCHHHHHHHHHHHHhc-CCeEEEEEeCCCCC
Q 045699 220 DVADQLS---LNIC--EGSESERAMMLCGQLKK-GKKILFVLDNIWTS 261 (266)
Q Consensus 220 ~i~~~~~---~~~~--~~~~~~~~~~l~~~L~~-~kr~LlvlDDvw~~ 261 (266)
.|++++. .... ..+..+....+.+.+.. +++++||||+++..
T Consensus 94 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L 141 (365)
T TIGR02928 94 ELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYL 141 (365)
T ss_pred HHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhh
Confidence 9999983 3222 23455666677777752 36889999999865
No 7
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.98 E-value=2.7e-09 Score=80.74 Aligned_cols=92 Identities=22% Similarity=0.342 Sum_probs=69.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccc---cCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCC-CCHHHHHHHHHHH
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKL---KVCDEVVFVEVSRTPDVKRIQGDVADQLSLNICE-GSESERAMMLCGQ 244 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~---~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~l~~~ 244 (266)
+.+.+.|+|..|+|||++++.+.++.... ..-..++|+.++...+...+...|+.+++..... .+..++...+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 35688999999999999999999986421 0134577999998889999999999999987665 6678888899999
Q ss_pred HhcCCeEEEEEeCCCC
Q 045699 245 LKKGKKILFVLDNIWT 260 (266)
Q Consensus 245 L~~~kr~LlvlDDvw~ 260 (266)
+...+..+||+||+..
T Consensus 83 l~~~~~~~lviDe~~~ 98 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADH 98 (131)
T ss_dssp HHHCTEEEEEEETTHH
T ss_pred HHhcCCeEEEEeChHh
Confidence 9884556999999753
No 8
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.95 E-value=3.4e-09 Score=93.24 Aligned_cols=92 Identities=17% Similarity=0.174 Sum_probs=64.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCC--CHHHHHHHHHHHhcC-CCCCCCHHH-----HHH
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTP--DVKRIQGDVADQLSL-NICEGSESE-----RAM 239 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~--~~~~~~~~i~~~~~~-~~~~~~~~~-----~~~ 239 (266)
......+|+|++|+|||||++.||+....+ +|++++||.+++.. ...+++++|...+-. ..+.....+ ..-
T Consensus 167 GkGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~i 245 (416)
T PRK09376 167 GKGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVI 245 (416)
T ss_pred ccCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHH
Confidence 356789999999999999999999998765 89999999999987 777888887632211 222222221 111
Q ss_pred HHHHHH-hcCCeEEEEEeCCCC
Q 045699 240 MLCGQL-KKGKKILFVLDNIWT 260 (266)
Q Consensus 240 ~l~~~L-~~~kr~LlvlDDvw~ 260 (266)
...+++ ..|++.||++|++..
T Consensus 246 e~Ae~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 246 EKAKRLVEHGKDVVILLDSITR 267 (416)
T ss_pred HHHHHHHHcCCCEEEEEEChHH
Confidence 222232 336999999999863
No 9
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.91 E-value=3e-08 Score=84.45 Aligned_cols=92 Identities=22% Similarity=0.221 Sum_probs=63.1
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH---
Q 045699 167 NPNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNICEGSESERAMMLCG--- 243 (266)
Q Consensus 167 ~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~--- 243 (266)
......+.|+|++|+|||||++.+++...... -..+|+ +....+..+++..|+..++.+....+...+...+..
T Consensus 40 ~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~--~~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~ 116 (269)
T TIGR03015 40 SQREGFILITGEVGAGKTTLIRNLLKRLDQER--VVAAKL-VNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLI 116 (269)
T ss_pred hcCCCEEEEEcCCCCCHHHHHHHHHHhcCCCC--eEEeee-eCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Confidence 34466899999999999999999999865221 122333 333457788999999998876544443333344433
Q ss_pred -HHhcCCeEEEEEeCCCCC
Q 045699 244 -QLKKGKKILFVLDNIWTS 261 (266)
Q Consensus 244 -~L~~~kr~LlvlDDvw~~ 261 (266)
.+..+++++||+||+|..
T Consensus 117 ~~~~~~~~~vliiDe~~~l 135 (269)
T TIGR03015 117 EQFAAGKRALLVVDEAQNL 135 (269)
T ss_pred HHHhCCCCeEEEEECcccC
Confidence 333348899999999874
No 10
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=1e-07 Score=84.46 Aligned_cols=115 Identities=22% Similarity=0.289 Sum_probs=90.8
Q ss_pred cccccchHHHHHHHHHHhC----CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHH
Q 045699 148 YEAFESRKSILNDALDALS----NPNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVAD 223 (266)
Q Consensus 148 ~~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~ 223 (266)
+..+.+|+.+++++...|. +....-+-|+|..|.|||+.++.+....+....-..+++|++-...++.+++..|++
T Consensus 16 P~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~ 95 (366)
T COG1474 16 PEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILN 95 (366)
T ss_pred cccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHH
Confidence 3348899999999987764 334445999999999999999999999764322222899999999999999999999
Q ss_pred HhcC-CCCCCCHHHHHHHHHHHHhc-CCeEEEEEeCCCCCC
Q 045699 224 QLSL-NICEGSESERAMMLCGQLKK-GKKILFVLDNIWTSL 262 (266)
Q Consensus 224 ~~~~-~~~~~~~~~~~~~l~~~L~~-~kr~LlvlDDvw~~~ 262 (266)
+++. +....+..+....+.+.+.. ++.++||||++..-.
T Consensus 96 ~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~ 136 (366)
T COG1474 96 KLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALV 136 (366)
T ss_pred HcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhc
Confidence 9964 33456677777888888865 588999999987654
No 11
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.78 E-value=4.9e-08 Score=86.36 Aligned_cols=92 Identities=14% Similarity=0.100 Sum_probs=65.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCC--CCHHHHHHHHHHHhcC-CCCCCCHH--HH----H
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRT--PDVKRIQGDVADQLSL-NICEGSES--ER----A 238 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~--~~~~~~~~~i~~~~~~-~~~~~~~~--~~----~ 238 (266)
.....++|+|++|+|||||++.+++....+ +|+..+|+.+++. .++.++++.|+..+-. ..+..... .+ .
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I~~n-hfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~ 244 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAITRN-HPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVI 244 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhhccc-CCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHH
Confidence 356789999999999999999999987654 8999999999976 7889999998543322 12211111 11 1
Q ss_pred HHHHHHHhcCCeEEEEEeCCCC
Q 045699 239 MMLCGQLKKGKKILFVLDNIWT 260 (266)
Q Consensus 239 ~~l~~~L~~~kr~LlvlDDvw~ 260 (266)
.........|++.+|++|++..
T Consensus 245 e~Ae~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 245 EKAKRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHHHHcCCCeEEEEEChhH
Confidence 2222233346999999999863
No 12
>PTZ00202 tuzin; Provisional
Probab=98.72 E-value=3e-07 Score=81.89 Aligned_cols=102 Identities=16% Similarity=0.177 Sum_probs=70.7
Q ss_pred cCCcccccchHHHHHHHHHHhCC---CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHH
Q 045699 145 SEGYEAFESRKSILNDALDALSN---PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDV 221 (266)
Q Consensus 145 ~~~~~~~~gr~~~~~~l~~~l~~---~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 221 (266)
|.+...|+||+.++..|...|.+ ....++.|.|++|+|||||++.+..... ..+++.-+. +..++++.|
T Consensus 258 Pa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~------~~qL~vNpr--g~eElLr~L 329 (550)
T PTZ00202 258 PAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG------MPAVFVDVR--GTEDTLRSV 329 (550)
T ss_pred CCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC------ceEEEECCC--CHHHHHHHH
Confidence 33466899999999999888853 2346899999999999999999997653 113333333 679999999
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHHHh----c-CCeEEEEE
Q 045699 222 ADQLSLNICEGSESERAMMLCGQLK----K-GKKILFVL 255 (266)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~l~~~L~----~-~kr~Llvl 255 (266)
+.+||.+.. ....++...|.+.|. . |++.+||+
T Consensus 330 L~ALGV~p~-~~k~dLLrqIqeaLl~~~~e~GrtPVLII 367 (550)
T PTZ00202 330 VKALGVPNV-EACGDLLDFISEACRRAKKMNGETPLLVL 367 (550)
T ss_pred HHHcCCCCc-ccHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 999997322 222344444444432 2 46777765
No 13
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.68 E-value=8.8e-08 Score=76.61 Aligned_cols=47 Identities=26% Similarity=0.333 Sum_probs=34.1
Q ss_pred ccchHHHHHHHHHHh---CCCCCcEEEEEcCCCCcHHHHHHHHHHHhccc
Q 045699 151 FESRKSILNDALDAL---SNPNVDVIGLCGVGGIGKTTLAKIVCDQAKKL 197 (266)
Q Consensus 151 ~~gr~~~~~~l~~~l---~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~ 197 (266)
|+||+.+++.+...+ .....+.+.|+|+.|+|||+|.+.++......
T Consensus 2 fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp -TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 789999999999998 24557999999999999999999999987754
No 14
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.68 E-value=2.8e-07 Score=70.16 Aligned_cols=58 Identities=22% Similarity=0.320 Sum_probs=44.2
Q ss_pred chHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCC
Q 045699 153 SRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTP 212 (266)
Q Consensus 153 gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~ 212 (266)
|++..+..+...+.......+.|+|+.|+|||||++.+++... ..-...+++..++..
T Consensus 2 ~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~~ 59 (151)
T cd00009 2 GQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLL 59 (151)
T ss_pred chHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhhh
Confidence 5677788888887766678999999999999999999999874 112345566655443
No 15
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.62 E-value=5.2e-08 Score=80.65 Aligned_cols=45 Identities=31% Similarity=0.332 Sum_probs=37.9
Q ss_pred ccchHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 151 FESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 151 ~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
|+||+.+++.|.+++.......+.|+|+.|+|||+|++.+.+..+
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~ 45 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELK 45 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhh
Confidence 689999999999998776789999999999999999999999864
No 16
>PF05729 NACHT: NACHT domain
Probab=98.54 E-value=3.5e-07 Score=71.65 Aligned_cols=87 Identities=25% Similarity=0.321 Sum_probs=53.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhccccC----CCeEEEEEeCCCCCHH---HHHHHHHHHhcCCCCCCCHHHHHHHHHH
Q 045699 171 DVIGLCGVGGIGKTTLAKIVCDQAKKLKV----CDEVVFVEVSRTPDVK---RIQGDVADQLSLNICEGSESERAMMLCG 243 (266)
Q Consensus 171 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~----f~~~~wv~v~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~l~~ 243 (266)
+++.|+|.+|+||||+++.+......... +...+|.+........ .+...|..+...... .... .+..
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~--~~~~---~~~~ 75 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIA--PIEE---LLQE 75 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchh--hhHH---HHHH
Confidence 47899999999999999999998765443 3456666665544332 333333333322111 1111 2333
Q ss_pred HHhcCCeEEEEEeCCCCCC
Q 045699 244 QLKKGKKILFVLDNIWTSL 262 (266)
Q Consensus 244 ~L~~~kr~LlvlDDvw~~~ 262 (266)
.+...++++||||++.+..
T Consensus 76 ~~~~~~~~llilDglDE~~ 94 (166)
T PF05729_consen 76 LLEKNKRVLLILDGLDELE 94 (166)
T ss_pred HHHcCCceEEEEechHhcc
Confidence 3333499999999987654
No 17
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.46 E-value=1.2e-06 Score=78.85 Aligned_cols=108 Identities=17% Similarity=0.142 Sum_probs=71.6
Q ss_pred ccccchHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCC
Q 045699 149 EAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLN 228 (266)
Q Consensus 149 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~ 228 (266)
.+++..+..++.+...|.. .+.+.++|++|+|||++|+.+++......+|+.+.||++++.++..+++..+.-. +..
T Consensus 175 ~d~~i~e~~le~l~~~L~~--~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~-~vg 251 (459)
T PRK11331 175 NDLFIPETTIETILKRLTI--KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPN-GVG 251 (459)
T ss_pred hcccCCHHHHHHHHHHHhc--CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCC-CCC
Confidence 3456667778888888763 5678889999999999999999987655678889999999999887765422100 001
Q ss_pred CCCCCHHHHHHHHHHHHhc-CCeEEEEEeCCCC
Q 045699 229 ICEGSESERAMMLCGQLKK-GKKILFVLDNIWT 260 (266)
Q Consensus 229 ~~~~~~~~~~~~l~~~L~~-~kr~LlvlDDvw~ 260 (266)
..-.+ .-....+....++ +++|+||+|++-.
T Consensus 252 y~~~~-G~f~~~~~~A~~~p~~~~vliIDEINR 283 (459)
T PRK11331 252 FRRKD-GIFYNFCQQAKEQPEKKYVFIIDEINR 283 (459)
T ss_pred eEecC-chHHHHHHHHHhcccCCcEEEEehhhc
Confidence 10000 1112223333322 3789999999854
No 18
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.41 E-value=8.1e-07 Score=80.46 Aligned_cols=50 Identities=22% Similarity=0.344 Sum_probs=40.3
Q ss_pred CCcccccchHHHHHH---HHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 146 EGYEAFESRKSILND---ALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 146 ~~~~~~~gr~~~~~~---l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
....+++|.+..+.. +.+++.......+.++|++|+||||||+.+.+...
T Consensus 9 ~~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~ 61 (413)
T PRK13342 9 KTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATD 61 (413)
T ss_pred CCHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 345678888777655 77777777778899999999999999999998754
No 19
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.34 E-value=9.7e-06 Score=77.90 Aligned_cols=114 Identities=16% Similarity=0.082 Sum_probs=78.8
Q ss_pred cccccchHHHHHHHHHHhC----CCC-CcEEEEEcCCCCcHHHHHHHHHHHhccc---cCCC--eEEEEEeCCCCCHHHH
Q 045699 148 YEAFESRKSILNDALDALS----NPN-VDVIGLCGVGGIGKTTLAKIVCDQAKKL---KVCD--EVVFVEVSRTPDVKRI 217 (266)
Q Consensus 148 ~~~~~gr~~~~~~l~~~l~----~~~-~~vi~I~G~~G~GKTtLa~~v~~~~~~~---~~f~--~~~wv~v~~~~~~~~~ 217 (266)
+..+.+|+.+.+.|...|. ... ..++-|+|+.|.|||+.++.|....... .... .+++|.+..-.++..+
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sI 833 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAA 833 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHH
Confidence 3457899999999988774 222 3567899999999999999998876421 1222 3567777777788889
Q ss_pred HHHHHHHhcCCCC--CCCHHHHHHHHHHHHhc--CCeEEEEEeCCCCC
Q 045699 218 QGDVADQLSLNIC--EGSESERAMMLCGQLKK--GKKILFVLDNIWTS 261 (266)
Q Consensus 218 ~~~i~~~~~~~~~--~~~~~~~~~~l~~~L~~--~kr~LlvlDDvw~~ 261 (266)
...|.+++..... ..+..+....+...+.. +...+||||||...
T Consensus 834 YqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L 881 (1164)
T PTZ00112 834 YQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYL 881 (1164)
T ss_pred HHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhh
Confidence 9999998854322 23344555566665532 13458999998754
No 20
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.24 E-value=6e-06 Score=69.27 Aligned_cols=94 Identities=27% Similarity=0.455 Sum_probs=61.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhcccc---CCC--------------eEEEEEeCCC-------------------
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLK---VCD--------------EVVFVEVSRT------------------- 211 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~f~--------------~~~wv~v~~~------------------- 211 (266)
+.-.+++|+|++|+|||||.+.++.-.+.+. ..+ ..+++ +|.
T Consensus 26 ~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~v--pQ~~~~~~~~tV~d~V~~GR~p 103 (258)
T COG1120 26 PKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYV--PQSPSAPFGLTVYELVLLGRYP 103 (258)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEe--ccCCCCCCCcEEeehHhhcCCc
Confidence 4578999999999999999999988544221 000 11222 111
Q ss_pred -------CC--HHHHHHHHHHHhcC------CCCCCCHHHHH-HHHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699 212 -------PD--VKRIQGDVADQLSL------NICEGSESERA-MMLCGQLKKGKKILFVLDNIWTSLDL 264 (266)
Q Consensus 212 -------~~--~~~~~~~i~~~~~~------~~~~~~~~~~~-~~l~~~L~~~kr~LlvlDDvw~~~~~ 264 (266)
++ -.++....++.++. .+...|..+++ ..+...|.+ +.=+|+||+..+.+|+
T Consensus 104 ~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ-~~~iLLLDEPTs~LDi 171 (258)
T COG1120 104 HLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQ-ETPILLLDEPTSHLDI 171 (258)
T ss_pred ccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhc-CCCEEEeCCCccccCH
Confidence 11 12244455666655 45566766655 456778887 8889999999999885
No 21
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.23 E-value=7.4e-06 Score=71.88 Aligned_cols=93 Identities=18% Similarity=0.303 Sum_probs=56.2
Q ss_pred cCCcccccchHHHH---HHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHH
Q 045699 145 SEGYEAFESRKSIL---NDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDV 221 (266)
Q Consensus 145 ~~~~~~~~gr~~~~---~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 221 (266)
|....+++|.+..+ ..|-+.+...++...-.||++|+||||||+.+..... .. +..+|...+-.+=++.|
T Consensus 20 P~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~--~~-----f~~~sAv~~gvkdlr~i 92 (436)
T COG2256 20 PKSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTN--AA-----FEALSAVTSGVKDLREI 92 (436)
T ss_pred CCCHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhC--Cc-----eEEeccccccHHHHHHH
Confidence 33455566655433 3344445567888999999999999999999998654 23 33444433322222333
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCC
Q 045699 222 ADQLSLNICEGSESERAMMLCGQLKKGKKILFVLDNIWT 260 (266)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~l~~~L~~~kr~LlvlDDvw~ 260 (266)
++. -++.+..|++.+|+||+|..
T Consensus 93 ~e~----------------a~~~~~~gr~tiLflDEIHR 115 (436)
T COG2256 93 IEE----------------ARKNRLLGRRTILFLDEIHR 115 (436)
T ss_pred HHH----------------HHHHHhcCCceEEEEehhhh
Confidence 321 11222224899999998864
No 22
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.20 E-value=1.2e-05 Score=60.44 Aligned_cols=91 Identities=24% Similarity=0.193 Sum_probs=52.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCC
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNICEGSESERAMMLCGQLKKGK 249 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~L~~~k 249 (266)
...+.|+|+.|+||||+++.+........ ...+++..+........... ...................+....+..+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILEEVLDQLL-LIIVGGKKASGSGELRLRLALALARKLK 78 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEEccccCHHHHH-hhhhhccCCCCCHHHHHHHHHHHHHhcC
Confidence 35789999999999999999998765321 23555555443322222111 1111112222233334445555555413
Q ss_pred eEEEEEeCCCCCCC
Q 045699 250 KILFVLDNIWTSLD 263 (266)
Q Consensus 250 r~LlvlDDvw~~~~ 263 (266)
..+|++|++.....
T Consensus 79 ~~viiiDei~~~~~ 92 (148)
T smart00382 79 PDVLILDEITSLLD 92 (148)
T ss_pred CCEEEEECCcccCC
Confidence 38999999987654
No 23
>PRK08118 topology modulation protein; Reviewed
Probab=98.19 E-value=9.2e-07 Score=70.01 Aligned_cols=35 Identities=31% Similarity=0.436 Sum_probs=29.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhccc-cCCCeEEE
Q 045699 171 DVIGLCGVGGIGKTTLAKIVCDQAKKL-KVCDEVVF 205 (266)
Q Consensus 171 ~vi~I~G~~G~GKTtLa~~v~~~~~~~-~~f~~~~w 205 (266)
..|.|+|++|+||||||+.+++..... -+||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 468999999999999999999997654 36787774
No 24
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.15 E-value=2.5e-05 Score=77.57 Aligned_cols=105 Identities=16% Similarity=0.143 Sum_probs=69.0
Q ss_pred cccccchHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeC-CCCCHHHHHHHHHHHhc
Q 045699 148 YEAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVS-RTPDVKRIQGDVADQLS 226 (266)
Q Consensus 148 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~-~~~~~~~~~~~i~~~~~ 226 (266)
..+++.|....+.+-. ....+++.|.|++|.||||++...... +..++|+++. .+.++..+...++..++
T Consensus 13 ~~~~~~R~rl~~~l~~---~~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~~l~ 83 (903)
T PRK04841 13 LHNTVVRERLLAKLSG---ANNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIAALQ 83 (903)
T ss_pred ccccCcchHHHHHHhc---ccCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHHHHH
Confidence 3456667655544432 245789999999999999999998753 2368999996 45567777788887774
Q ss_pred CCCCC--------------CCHHHHHHHHHHHHhc-CCeEEEEEeCCCCC
Q 045699 227 LNICE--------------GSESERAMMLCGQLKK-GKKILFVLDNIWTS 261 (266)
Q Consensus 227 ~~~~~--------------~~~~~~~~~l~~~L~~-~kr~LlvlDDvw~~ 261 (266)
..... .+...+...+...|.. +.+++|||||+...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~ 133 (903)
T PRK04841 84 QATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLI 133 (903)
T ss_pred HhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcC
Confidence 21100 1222334444444442 38999999998653
No 25
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.13 E-value=1.3e-05 Score=69.57 Aligned_cols=80 Identities=29% Similarity=0.370 Sum_probs=54.3
Q ss_pred HHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 045699 162 LDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNICEGSESERAMML 241 (266)
Q Consensus 162 ~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l 241 (266)
.+.+..+.+..+-+||+.|+||||||+.+.+..+... ..+|..|....-..=.+.|+++-.. .
T Consensus 154 rs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~aq~-------------~ 216 (554)
T KOG2028|consen 154 RSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQAQN-------------E 216 (554)
T ss_pred HHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHHHH-------------H
Confidence 3344567889999999999999999999999876332 5677777765555445555543311 1
Q ss_pred HHHHhcCCeEEEEEeCCCC
Q 045699 242 CGQLKKGKKILFVLDNIWT 260 (266)
Q Consensus 242 ~~~L~~~kr~LlvlDDvw~ 260 (266)
..+-. +|-+|++|+|..
T Consensus 217 -~~l~k-rkTilFiDEiHR 233 (554)
T KOG2028|consen 217 -KSLTK-RKTILFIDEIHR 233 (554)
T ss_pred -Hhhhc-ceeEEEeHHhhh
Confidence 12223 788888888753
No 26
>PRK12608 transcription termination factor Rho; Provisional
Probab=98.12 E-value=4.4e-05 Score=67.36 Aligned_cols=101 Identities=13% Similarity=0.179 Sum_probs=66.9
Q ss_pred HHHHHHhCC-CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCe-EEEEEeCC-CCCHHHHHHHHHHHhcCCCCCCC-H
Q 045699 159 NDALDALSN-PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDE-VVFVEVSR-TPDVKRIQGDVADQLSLNICEGS-E 234 (266)
Q Consensus 159 ~~l~~~l~~-~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~-~~wv~v~~-~~~~~~~~~~i~~~~~~~~~~~~-~ 234 (266)
.++++.+.. .....+.|+|..|+|||||++.+.+..... +-+. ++|+.+.+ ...+.++.+.++..+.....+.+ .
T Consensus 121 ~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~~-~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~ 199 (380)
T PRK12608 121 MRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAAN-HPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPD 199 (380)
T ss_pred HhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHhc-CCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHH
Confidence 346666653 455788999999999999999998876532 3344 57777775 45677888888887765432222 1
Q ss_pred H-----HHHHHHHHHHh-cCCeEEEEEeCCCC
Q 045699 235 S-----ERAMMLCGQLK-KGKKILFVLDNIWT 260 (266)
Q Consensus 235 ~-----~~~~~l~~~L~-~~kr~LlvlDDvw~ 260 (266)
. +....+.+++. .|++.+||+|++..
T Consensus 200 ~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr 231 (380)
T PRK12608 200 EHIRVAELVLERAKRLVEQGKDVVILLDSLTR 231 (380)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHH
Confidence 1 12223333443 36999999999863
No 27
>PF13173 AAA_14: AAA domain
Probab=98.10 E-value=4.6e-06 Score=62.94 Aligned_cols=76 Identities=22% Similarity=0.291 Sum_probs=48.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCC
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNICEGSESERAMMLCGQLKKGK 249 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~L~~~k 249 (266)
.+++.|.|+-|+|||||++.++.+.. .....+|++........... .+....+.+.... +
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~----------------~~~~~~~~~~~~~-~ 61 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLAD----------------PDLLEYFLELIKP-G 61 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhh----------------hhhHHHHHHhhcc-C
Confidence 46899999999999999999998754 23456666655443211100 0022333333444 6
Q ss_pred eEEEEEeCCCCCCCCC
Q 045699 250 KILFVLDNIWTSLDLE 265 (266)
Q Consensus 250 r~LlvlDDvw~~~~~~ 265 (266)
..+|+||+|-..-+|.
T Consensus 62 ~~~i~iDEiq~~~~~~ 77 (128)
T PF13173_consen 62 KKYIFIDEIQYLPDWE 77 (128)
T ss_pred CcEEEEehhhhhccHH
Confidence 7788899987776653
No 28
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.09 E-value=6.2e-05 Score=64.36 Aligned_cols=107 Identities=15% Similarity=0.165 Sum_probs=75.2
Q ss_pred HHHHHHHHHhCC---CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCC----CeEEEEEeCCCCCHHHHHHHHHHHhcCC
Q 045699 156 SILNDALDALSN---PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVC----DEVVFVEVSRTPDVKRIQGDVADQLSLN 228 (266)
Q Consensus 156 ~~~~~l~~~l~~---~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f----~~~~wv~v~~~~~~~~~~~~i~~~~~~~ 228 (266)
+.++.|-+++.. ....-+.|||.+|.|||++++...........- -.++.|..+..++...+...|+.+++.+
T Consensus 44 ~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP 123 (302)
T PF05621_consen 44 EALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAP 123 (302)
T ss_pred HHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcc
Confidence 344555555542 345779999999999999999998874322111 1477888899999999999999999997
Q ss_pred CCC-CCHHHHHHHHHHHHhcCCeEEEEEeCCCCCC
Q 045699 229 ICE-GSESERAMMLCGQLKKGKKILFVLDNIWTSL 262 (266)
Q Consensus 229 ~~~-~~~~~~~~~l~~~L~~~kr~LlvlDDvw~~~ 262 (266)
... .+...+.......|+.-+-=+||+|++-+..
T Consensus 124 ~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lL 158 (302)
T PF05621_consen 124 YRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLL 158 (302)
T ss_pred cCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHh
Confidence 653 3344555555555554344488999987643
No 29
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.08 E-value=2.9e-05 Score=67.42 Aligned_cols=106 Identities=15% Similarity=0.130 Sum_probs=64.6
Q ss_pred cccccchHHHHHHHHHHhC-----CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 045699 148 YEAFESRKSILNDALDALS-----NPNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVA 222 (266)
Q Consensus 148 ~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~ 222 (266)
..+|+|++..++.|..++. ......+.++|+.|+|||+||+.+.+.... .| ..+..+....... +...+
T Consensus 3 ~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~--~~---~~~~~~~~~~~~~-l~~~l 76 (305)
T TIGR00635 3 LAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGV--NL---KITSGPALEKPGD-LAAIL 76 (305)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCC--CE---EEeccchhcCchh-HHHHH
Confidence 3468999999998888774 234567889999999999999999987652 11 1222221112222 23334
Q ss_pred HHhcCCC-------CCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCC
Q 045699 223 DQLSLNI-------CEGSESERAMMLCGQLKKGKKILFVLDNIWTS 261 (266)
Q Consensus 223 ~~~~~~~-------~~~~~~~~~~~l~~~L~~~kr~LlvlDDvw~~ 261 (266)
..++... ...+. .....+...+.+ .+..+|+++-.+.
T Consensus 77 ~~~~~~~vl~iDEi~~l~~-~~~e~l~~~~~~-~~~~~v~~~~~~~ 120 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLSP-AVEELLYPAMED-FRLDIVIGKGPSA 120 (305)
T ss_pred HhcccCCEEEEehHhhhCH-HHHHHhhHHHhh-hheeeeeccCccc
Confidence 4443311 11221 234456777777 7777888875543
No 30
>PRK07261 topology modulation protein; Provisional
Probab=98.08 E-value=1.9e-05 Score=62.76 Aligned_cols=50 Identities=24% Similarity=0.292 Sum_probs=32.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcccc-CCCeEEEEEeCCCCCHHHHHHHH
Q 045699 172 VIGLCGVGGIGKTTLAKIVCDQAKKLK-VCDEVVFVEVSRTPDVKRIQGDV 221 (266)
Q Consensus 172 vi~I~G~~G~GKTtLa~~v~~~~~~~~-~f~~~~wv~v~~~~~~~~~~~~i 221 (266)
.|.|+|++|+||||||+.+........ +.|...|-.-....+..++...+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~ 52 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNWQERDDDDMIADI 52 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccccccCCHHHHHHHH
Confidence 589999999999999999987654322 45666665433333444444433
No 31
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.01 E-value=3.6e-05 Score=67.62 Aligned_cols=49 Identities=18% Similarity=0.257 Sum_probs=42.3
Q ss_pred CcccccchHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 147 GYEAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 147 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
...+++|++..++.+.+++..+....+.++|+.|+||||+|+.+.+...
T Consensus 13 ~~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 13 LLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred cHHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 3567889999999999988777767789999999999999999988764
No 32
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.00 E-value=2.2e-05 Score=64.33 Aligned_cols=51 Identities=22% Similarity=0.386 Sum_probs=36.5
Q ss_pred cCCcccccchHHHHHHHHHHhC-----CCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 145 SEGYEAFESRKSILNDALDALS-----NPNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 145 ~~~~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
|....+|+|.+..+..+.-++. ...+..+-.||++|+||||||+.+.+...
T Consensus 20 P~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~ 75 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELG 75 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT
T ss_pred CCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccC
Confidence 4457789999888877654432 34688999999999999999999999876
No 33
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.00 E-value=3.1e-05 Score=75.99 Aligned_cols=48 Identities=19% Similarity=0.270 Sum_probs=41.6
Q ss_pred cccccchHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 148 YEAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 148 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
..+++||+.+++.+++.|......-+.++|++|+|||++|+.+.....
T Consensus 178 ~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~ 225 (821)
T CHL00095 178 LDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIV 225 (821)
T ss_pred CCCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 456899999999999999866666778999999999999999988753
No 34
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.00 E-value=2.1e-05 Score=65.06 Aligned_cols=56 Identities=16% Similarity=0.309 Sum_probs=41.3
Q ss_pred chHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCC
Q 045699 153 SRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSR 210 (266)
Q Consensus 153 gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~ 210 (266)
+.+..++.+.+++.......+.|+|+.|+|||+||+.+++.... .....++++++.
T Consensus 21 ~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~--~~~~~~~i~~~~ 76 (226)
T TIGR03420 21 GNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEE--RGKSAIYLPLAE 76 (226)
T ss_pred CcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHh--cCCcEEEEeHHH
Confidence 34556777777765566789999999999999999999988642 233455665543
No 35
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.96 E-value=2.3e-05 Score=65.28 Aligned_cols=37 Identities=24% Similarity=0.263 Sum_probs=30.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEe
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEV 208 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v 208 (266)
.-.++|+|..|+|||||...+..... +.|.++.+++-
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~~~~--~~f~~I~l~t~ 49 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLYYLR--HKFDHIFLITP 49 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhc--ccCCEEEEEec
Confidence 45788999999999999999988755 67877766644
No 36
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.94 E-value=9.2e-05 Score=64.72 Aligned_cols=112 Identities=17% Similarity=0.225 Sum_probs=79.4
Q ss_pred cccccchHHHHHHHHHHhCCCCC---cEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 045699 148 YEAFESRKSILNDALDALSNPNV---DVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQ 224 (266)
Q Consensus 148 ~~~~~gr~~~~~~l~~~l~~~~~---~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~ 224 (266)
..++.+|+.++..+..++.+... ..+-|+|..|.|||.+.+.+++... -..+|+++-..++...++..|+.+
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n-----~~~vw~n~~ecft~~~lle~IL~~ 79 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLN-----LENVWLNCVECFTYAILLEKILNK 79 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcC-----CcceeeehHHhccHHHHHHHHHHH
Confidence 34678899999999998875432 3457899999999999999999874 246799999999999999999999
Q ss_pred hcC-CCCCCCH----H---HHHHHHHH--HHhc-CCeEEEEEeCCCCCCCC
Q 045699 225 LSL-NICEGSE----S---ERAMMLCG--QLKK-GKKILFVLDNIWTSLDL 264 (266)
Q Consensus 225 ~~~-~~~~~~~----~---~~~~~l~~--~L~~-~kr~LlvlDDvw~~~~~ 264 (266)
.+. +.++... + .....+.+ ...+ ++.++||||++..--|.
T Consensus 80 ~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~ 130 (438)
T KOG2543|consen 80 SQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDM 130 (438)
T ss_pred hccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhcc
Confidence 963 2111111 1 11222222 1222 36899999998765554
No 37
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.94 E-value=6.8e-05 Score=72.78 Aligned_cols=48 Identities=21% Similarity=0.283 Sum_probs=42.1
Q ss_pred cccccchHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 148 YEAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 148 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
.++++||+.+++.+++.|......-+.++|++|+|||++|+.+.....
T Consensus 181 l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~ 228 (731)
T TIGR02639 181 IDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIA 228 (731)
T ss_pred CCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 457899999999999988776667778999999999999999998763
No 38
>PRK04195 replication factor C large subunit; Provisional
Probab=97.93 E-value=4.7e-05 Score=70.42 Aligned_cols=49 Identities=16% Similarity=0.218 Sum_probs=40.8
Q ss_pred CcccccchHHHHHHHHHHhCC----CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 147 GYEAFESRKSILNDALDALSN----PNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 147 ~~~~~~gr~~~~~~l~~~l~~----~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
...+++|.+..++.|.+|+.. ...+.+.|+|+.|+||||+|+.+.+...
T Consensus 12 ~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~ 64 (482)
T PRK04195 12 TLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG 64 (482)
T ss_pred CHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 356789999999999888752 2268899999999999999999999763
No 39
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=97.93 E-value=0.0001 Score=64.72 Aligned_cols=106 Identities=14% Similarity=0.116 Sum_probs=64.4
Q ss_pred CcccccchHHHHHHHHHHhC-----CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHH
Q 045699 147 GYEAFESRKSILNDALDALS-----NPNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDV 221 (266)
Q Consensus 147 ~~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 221 (266)
...+|+|++..++.+..++. ......+.++|+.|+||||||+.+.+..... + .++..+. .....-+..+
T Consensus 23 ~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~--~---~~~~~~~-~~~~~~l~~~ 96 (328)
T PRK00080 23 SLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVN--I---RITSGPA-LEKPGDLAAI 96 (328)
T ss_pred CHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCC--e---EEEeccc-ccChHHHHHH
Confidence 46679999999988876663 2346788999999999999999999986521 1 1122211 1222233445
Q ss_pred HHHhcCCC-------CCCCHHHHHHHHHHHHhcCCeEEEEEeCCCC
Q 045699 222 ADQLSLNI-------CEGSESERAMMLCGQLKKGKKILFVLDNIWT 260 (266)
Q Consensus 222 ~~~~~~~~-------~~~~~~~~~~~l~~~L~~~kr~LlvlDDvw~ 260 (266)
+..++... +..+. .....+...+.+ .+..+++|+-.+
T Consensus 97 l~~l~~~~vl~IDEi~~l~~-~~~e~l~~~~e~-~~~~~~l~~~~~ 140 (328)
T PRK00080 97 LTNLEEGDVLFIDEIHRLSP-VVEEILYPAMED-FRLDIMIGKGPA 140 (328)
T ss_pred HHhcccCCEEEEecHhhcch-HHHHHHHHHHHh-cceeeeeccCcc
Confidence 55443311 11121 123345667776 777777776443
No 40
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.92 E-value=5e-05 Score=73.07 Aligned_cols=51 Identities=31% Similarity=0.467 Sum_probs=40.1
Q ss_pred cCCcccccchHHHHH---HHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 145 SEGYEAFESRKSILN---DALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 145 ~~~~~~~~gr~~~~~---~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
+....+++|.+..+. .+.+.+...+...+.++|++|+||||||+.+++...
T Consensus 24 P~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~ 77 (725)
T PRK13341 24 PRTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTR 77 (725)
T ss_pred CCcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 334567888877663 466666667788889999999999999999998754
No 41
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.92 E-value=4e-05 Score=72.76 Aligned_cols=63 Identities=32% Similarity=0.477 Sum_probs=47.2
Q ss_pred CcccccchHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCC---eEEEEEeC
Q 045699 147 GYEAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCD---EVVFVEVS 209 (266)
Q Consensus 147 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~---~~~wv~v~ 209 (266)
+...++|++..+..+.+.+.......+.|+|++|+||||||+.+++..+....+. ..-|+.+.
T Consensus 152 ~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~ 217 (615)
T TIGR02903 152 AFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVD 217 (615)
T ss_pred cHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEe
Confidence 3556888888888888777666677899999999999999999998865433332 23455554
No 42
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.91 E-value=2.5e-05 Score=58.63 Aligned_cols=23 Identities=43% Similarity=0.491 Sum_probs=21.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhc
Q 045699 173 IGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 173 i~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
|.|+|+.|+||||+|+.+.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 56899999999999999999874
No 43
>PLN03025 replication factor C subunit; Provisional
Probab=97.91 E-value=0.00012 Score=64.18 Aligned_cols=49 Identities=16% Similarity=0.161 Sum_probs=41.3
Q ss_pred CCcccccchHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 146 EGYEAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 146 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
....+++|.+..++.|.+++...+...+-++|+.|+||||+|+.+.+..
T Consensus 10 ~~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 10 TKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHEL 58 (319)
T ss_pred CCHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 3456788888888888888777777778899999999999999998875
No 44
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.89 E-value=0.00021 Score=64.04 Aligned_cols=116 Identities=18% Similarity=0.219 Sum_probs=80.9
Q ss_pred cCCcccccchHHHHHHHHHHhC----CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHH
Q 045699 145 SEGYEAFESRKSILNDALDALS----NPNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGD 220 (266)
Q Consensus 145 ~~~~~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~ 220 (266)
+.++..+.||+.+...+.+|+. .+..+-+-|.|-.|.|||.+...++.+......=-+++++++..-.....++..
T Consensus 146 t~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~k 225 (529)
T KOG2227|consen 146 TAPPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKK 225 (529)
T ss_pred cCCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHH
Confidence 3345678999999988888774 356788999999999999999999998753222235677877665567788888
Q ss_pred HHHHhcCC-CCCCCHHHHHHHHHHHHhcCC-eEEEEEeCCCC
Q 045699 221 VADQLSLN-ICEGSESERAMMLCGQLKKGK-KILFVLDNIWT 260 (266)
Q Consensus 221 i~~~~~~~-~~~~~~~~~~~~l~~~L~~~k-r~LlvlDDvw~ 260 (266)
|...+-.. .......+....+..+....+ -||+|||++..
T Consensus 226 I~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~ 267 (529)
T KOG2227|consen 226 IFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDH 267 (529)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhH
Confidence 88777221 112223445556666665423 68999998754
No 45
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=97.86 E-value=0.0001 Score=68.44 Aligned_cols=97 Identities=24% Similarity=0.283 Sum_probs=58.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccc-c-----CCCeEEEEEeCC---------------CC-C-HHHHHHHHHHH
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKL-K-----VCDEVVFVEVSR---------------TP-D-VKRIQGDVADQ 224 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~-~-----~f~~~~wv~v~~---------------~~-~-~~~~~~~i~~~ 224 (266)
..-..|+|+|++|+|||||.+.+....... + .--...|+.-.. .+ + ...-.+..+.+
T Consensus 346 ~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~ 425 (530)
T COG0488 346 DRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGR 425 (530)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHH
Confidence 456789999999999999999997764321 1 001112221111 01 1 12334445555
Q ss_pred hcC-------CCCCCCHHHHHHH-HHHHHhcCCeEEEEEeCCCCCCCCC
Q 045699 225 LSL-------NICEGSESERAMM-LCGQLKKGKKILFVLDNIWTSLDLE 265 (266)
Q Consensus 225 ~~~-------~~~~~~~~~~~~~-l~~~L~~~kr~LlvlDDvw~~~~~~ 265 (266)
++. .....|..+..+. |...+-. +..+||||+..|++|.+
T Consensus 426 f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~-~pNvLiLDEPTNhLDi~ 473 (530)
T COG0488 426 FGFTGEDQEKPVGVLSGGEKARLLLAKLLLQ-PPNLLLLDEPTNHLDIE 473 (530)
T ss_pred cCCChHHHhCchhhcCHhHHHHHHHHHHhcc-CCCEEEEcCCCccCCHH
Confidence 544 2334566666555 4455555 99999999999999875
No 46
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.84 E-value=0.00022 Score=62.06 Aligned_cols=50 Identities=18% Similarity=0.230 Sum_probs=42.9
Q ss_pred CCcccccchHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 146 EGYEAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 146 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
....+++|++..++.+..++.......+.++|+.|+||||+++.+.+...
T Consensus 14 ~~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~ 63 (319)
T PRK00440 14 RTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELY 63 (319)
T ss_pred CcHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHc
Confidence 34566889999999999998776677789999999999999999998864
No 47
>PRK06893 DNA replication initiation factor; Validated
Probab=97.83 E-value=7.4e-05 Score=62.24 Aligned_cols=39 Identities=18% Similarity=0.207 Sum_probs=29.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeC
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVS 209 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~ 209 (266)
....+.++|+.|+|||+|++.+.+....+ ...+.|+++.
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~~~--~~~~~y~~~~ 76 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYLLN--QRTAIYIPLS 76 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEeeHH
Confidence 34578999999999999999999986432 2345666664
No 48
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.81 E-value=0.00014 Score=67.18 Aligned_cols=48 Identities=27% Similarity=0.326 Sum_probs=37.1
Q ss_pred cccccchHHHHHHHHHHhC----C---------CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 148 YEAFESRKSILNDALDALS----N---------PNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 148 ~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
+.++.|.+..++.|.+.+. . ...+-+.++|+.|+|||++|+.+++...
T Consensus 181 ~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~ 241 (512)
T TIGR03689 181 YADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLA 241 (512)
T ss_pred HHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhc
Confidence 4557788888877766542 1 2345688999999999999999999865
No 49
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.80 E-value=0.00011 Score=61.52 Aligned_cols=92 Identities=24% Similarity=0.367 Sum_probs=60.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhcccc----CC----------CeEEEEEeCCCC--------CH------------
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLK----VC----------DEVVFVEVSRTP--------DV------------ 214 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~----~f----------~~~~wv~v~~~~--------~~------------ 214 (266)
.-..++|+|++|.|||||.+.+..-.+... .| ..+.|| +|.. +.
T Consensus 29 ~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYV--PQ~~~~d~~fP~tV~d~V~~g~~~~~ 106 (254)
T COG1121 29 KGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYV--PQKSSVDRSFPITVKDVVLLGRYGKK 106 (254)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEc--CcccccCCCCCcCHHHHHHccCcccc
Confidence 458999999999999999999988543111 11 123444 3311 11
Q ss_pred ----------HHHHHHHHHHhcC------CCCCCCHHHHHH-HHHHHHhcCCeEEEEEeCCCCCCC
Q 045699 215 ----------KRIQGDVADQLSL------NICEGSESERAM-MLCGQLKKGKKILFVLDNIWTSLD 263 (266)
Q Consensus 215 ----------~~~~~~i~~~~~~------~~~~~~~~~~~~-~l~~~L~~~kr~LlvlDDvw~~~~ 263 (266)
.+...+.+++++. .+...|..+.++ .|.+.|.+ +.=|++||+...-.|
T Consensus 107 g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~-~p~lllLDEP~~gvD 171 (254)
T COG1121 107 GWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQ-NPDLLLLDEPFTGVD 171 (254)
T ss_pred cccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhcc-CCCEEEecCCcccCC
Confidence 2344556666655 345667655554 46778888 899999999887766
No 50
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=97.80 E-value=0.00025 Score=60.19 Aligned_cols=91 Identities=22% Similarity=0.360 Sum_probs=59.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCC-CeEEEEEeCCCCC-HHHHHHHHHHHhcC--------CCCCCCHH--
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVC-DEVVFVEVSRTPD-VKRIQGDVADQLSL--------NICEGSES-- 235 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f-~~~~wv~v~~~~~-~~~~~~~i~~~~~~--------~~~~~~~~-- 235 (266)
.+-..++|+|..|+|||||++.+++..+. +| +.++++.+.+... ..++.+++...-.. ..+.....
T Consensus 67 g~GQr~~If~~~G~GKTtLa~~i~~~i~~--~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 144 (274)
T cd01133 67 AKGGKIGLFGGAGVGKTVLIMELINNIAK--AHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARA 144 (274)
T ss_pred ccCCEEEEecCCCCChhHHHHHHHHHHHh--cCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 35688999999999999999999998763 34 5667777776543 34555555443211 11111111
Q ss_pred ---HHHHHHHHHHhc--CCeEEEEEeCCCC
Q 045699 236 ---ERAMMLCGQLKK--GKKILFVLDNIWT 260 (266)
Q Consensus 236 ---~~~~~l~~~L~~--~kr~LlvlDDvw~ 260 (266)
.....+.+++++ |+..||++||+..
T Consensus 145 ~~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr 174 (274)
T cd01133 145 RVALTGLTMAEYFRDEEGQDVLLFIDNIFR 174 (274)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEeChhH
Confidence 223445677742 5999999999864
No 51
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.77 E-value=0.00015 Score=71.25 Aligned_cols=48 Identities=19% Similarity=0.241 Sum_probs=42.4
Q ss_pred cccccchHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 148 YEAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 148 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
..+++||+.++..+++.|......-+.++|++|+||||+|+.+.....
T Consensus 186 ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~ 233 (852)
T TIGR03345 186 IDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIA 233 (852)
T ss_pred CCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHh
Confidence 567899999999999998877677778999999999999999998753
No 52
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.75 E-value=0.00029 Score=58.68 Aligned_cols=91 Identities=16% Similarity=0.193 Sum_probs=59.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccccC----CCeEEEEEeCCCCCHHHHHHHHHHHhcCCC----------CCCCH
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKV----CDEVVFVEVSRTPDVKRIQGDVADQLSLNI----------CEGSE 234 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~----f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~----------~~~~~ 234 (266)
.-.++.|+|.+|+|||+|+..+.-....... ...++|++....++..++. +++++.+... ...+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~~ 96 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLV-QIAERFGLDPEEVLDNIYVARAYNS 96 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHH-HHHHHhccChHhHhcCEEEEecCCH
Confidence 4689999999999999999999754322111 3678999988877766543 4444443311 11122
Q ss_pred H---HHHHHHHHHHhcC-CeEEEEEeCCCC
Q 045699 235 S---ERAMMLCGQLKKG-KKILFVLDNIWT 260 (266)
Q Consensus 235 ~---~~~~~l~~~L~~~-kr~LlvlDDvw~ 260 (266)
. .....+...+.+. +--|||+|-+..
T Consensus 97 ~~l~~~l~~l~~~l~~~~~~~liVIDSis~ 126 (235)
T cd01123 97 DHQLQLLEELEAILIESSRIKLVIVDSVTA 126 (235)
T ss_pred HHHHHHHHHHHHHHhhcCCeeEEEEeCcHH
Confidence 2 3344556666664 677999998864
No 53
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.75 E-value=0.00058 Score=65.35 Aligned_cols=105 Identities=21% Similarity=0.204 Sum_probs=73.2
Q ss_pred cccccchHHHHHHHHHHhCC-CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCC-CCCHHHHHHHHHHHh
Q 045699 148 YEAFESRKSILNDALDALSN-PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSR-TPDVKRIQGDVADQL 225 (266)
Q Consensus 148 ~~~~~gr~~~~~~l~~~l~~-~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~i~~~~ 225 (266)
..+.+-|.. |++.|.+ .+.+.+.|..|.|.|||||+-...... ..-..+.|.+++. +.++..++..++.++
T Consensus 18 ~~~~v~R~r----L~~~L~~~~~~RL~li~APAGfGKttl~aq~~~~~---~~~~~v~Wlslde~dndp~rF~~yLi~al 90 (894)
T COG2909 18 PDNYVVRPR----LLDRLRRANDYRLILISAPAGFGKTTLLAQWRELA---ADGAAVAWLSLDESDNDPARFLSYLIAAL 90 (894)
T ss_pred cccccccHH----HHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHHhc---CcccceeEeecCCccCCHHHHHHHHHHHH
Confidence 445555654 4444443 478999999999999999999998732 2345789999975 567889999999988
Q ss_pred cCCCCC--------------CCHHHHHHHHHHHHhc-CCeEEEEEeCCC
Q 045699 226 SLNICE--------------GSESERAMMLCGQLKK-GKKILFVLDNIW 259 (266)
Q Consensus 226 ~~~~~~--------------~~~~~~~~~l~~~L~~-~kr~LlvlDDvw 259 (266)
+...+. .+...+...+..-|.+ .+++++||||--
T Consensus 91 ~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyH 139 (894)
T COG2909 91 QQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYH 139 (894)
T ss_pred HHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEecccc
Confidence 752221 1233455555555554 468999999964
No 54
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.74 E-value=9.3e-05 Score=62.09 Aligned_cols=92 Identities=22% Similarity=0.312 Sum_probs=60.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEE------eCCCCCHHHHHHHHHHHhcCCC-------CCCCH
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVE------VSRTPDVKRIQGDVADQLSLNI-------CEGSE 234 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~------v~~~~~~~~~~~~i~~~~~~~~-------~~~~~ 234 (266)
....+++|||.+|+|||||++.+..-.+.. ...++.. .+ .....+-..+++..++... ...+.
T Consensus 37 ~~ge~~glVGESG~GKSTlgr~i~~L~~pt---~G~i~f~g~~i~~~~-~~~~~~~v~elL~~Vgl~~~~~~ryPhelSG 112 (268)
T COG4608 37 KEGETLGLVGESGCGKSTLGRLILGLEEPT---SGEILFEGKDITKLS-KEERRERVLELLEKVGLPEEFLYRYPHELSG 112 (268)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHcCcCCC---CceEEEcCcchhhcc-hhHHHHHHHHHHHHhCCCHHHhhcCCcccCc
Confidence 457899999999999999999998865422 2233222 11 1223344556777776621 23454
Q ss_pred HHHHH-HHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699 235 SERAM-MLCGQLKKGKKILFVLDNIWTSLDL 264 (266)
Q Consensus 235 ~~~~~-~l~~~L~~~kr~LlvlDDvw~~~~~ 264 (266)
.+++. .+...|.- +.=|||.|+.-+.+|.
T Consensus 113 GQrQRi~IARALal-~P~liV~DEpvSaLDv 142 (268)
T COG4608 113 GQRQRIGIARALAL-NPKLIVADEPVSALDV 142 (268)
T ss_pred hhhhhHHHHHHHhh-CCcEEEecCchhhcch
Confidence 44443 46777877 8889999998887663
No 55
>PRK08727 hypothetical protein; Validated
Probab=97.74 E-value=0.00017 Score=60.23 Aligned_cols=51 Identities=24% Similarity=0.374 Sum_probs=34.4
Q ss_pred HHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeC
Q 045699 157 ILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVS 209 (266)
Q Consensus 157 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~ 209 (266)
.+..+...........+.|+|..|+|||+|++.+++....+ ....+|+++.
T Consensus 28 ~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~--~~~~~y~~~~ 78 (233)
T PRK08727 28 LLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQA--GRSSAYLPLQ 78 (233)
T ss_pred HHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEeHH
Confidence 33333333333445679999999999999999999886532 3355666644
No 56
>PHA00729 NTP-binding motif containing protein
Probab=97.72 E-value=0.00014 Score=59.91 Aligned_cols=35 Identities=29% Similarity=0.278 Sum_probs=28.3
Q ss_pred HHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 160 DALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 160 ~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
.+++-+.......|.|.|.+|+||||||..+.+..
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34455555566789999999999999999998875
No 57
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.72 E-value=0.00019 Score=57.32 Aligned_cols=28 Identities=43% Similarity=0.601 Sum_probs=24.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
..-.+++|+|++|+|||||++.+..-..
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLI 50 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 3567999999999999999999988643
No 58
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=0.00082 Score=63.28 Aligned_cols=101 Identities=17% Similarity=0.244 Sum_probs=62.0
Q ss_pred cccccchHHHHHHHHHHhC------CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHH
Q 045699 148 YEAFESRKSILNDALDALS------NPNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDV 221 (266)
Q Consensus 148 ~~~~~gr~~~~~~l~~~l~------~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 221 (266)
.++-.|.++.+++|++++. +.+.++++.+|++|+|||++++.|...... .|. -++|+.-.+..+|-..=
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnR--kFf---RfSvGG~tDvAeIkGHR 484 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNR--KFF---RFSVGGMTDVAEIKGHR 484 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCC--ceE---EEeccccccHHhhcccc
Confidence 3455788899999998873 346799999999999999999999998752 222 23455555554432110
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCC
Q 045699 222 ADQLSLNICEGSESERAMMLCGQLKKGKKILFVLDNIWT 260 (266)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~l~~~L~~~kr~LlvlDDvw~ 260 (266)
-. ....++. ..-...+..+. .+-|++||+|..
T Consensus 485 RT----YVGAMPG--kiIq~LK~v~t-~NPliLiDEvDK 516 (906)
T KOG2004|consen 485 RT----YVGAMPG--KIIQCLKKVKT-ENPLILIDEVDK 516 (906)
T ss_pred ee----eeccCCh--HHHHHHHhhCC-CCceEEeehhhh
Confidence 00 1112221 11112223334 667888888865
No 59
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.71 E-value=0.00019 Score=59.21 Aligned_cols=95 Identities=28% Similarity=0.401 Sum_probs=56.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccc-------c-----------CCCeE--EEEEeCCCCC----HHHH------
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKL-------K-----------VCDEV--VFVEVSRTPD----VKRI------ 217 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~-------~-----------~f~~~--~wv~v~~~~~----~~~~------ 217 (266)
....+++|+|..|+|||||++.+..-.+.. + .|..+ +|=.-....+ ..++
T Consensus 31 ~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~ 110 (252)
T COG1124 31 ERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLR 110 (252)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhhhhc
Confidence 456899999999999999999996543211 0 11111 2221122222 2222
Q ss_pred ----------HHHHHHHhcCC-------CCCCCHHHHHHH-HHHHHhcCCeEEEEEeCCCCCCC
Q 045699 218 ----------QGDVADQLSLN-------ICEGSESERAMM-LCGQLKKGKKILFVLDNIWTSLD 263 (266)
Q Consensus 218 ----------~~~i~~~~~~~-------~~~~~~~~~~~~-l~~~L~~~kr~LlvlDDvw~~~~ 263 (266)
..+++.+++.+ ....|..++++. +.+.|.- +.=+||+|+..+.+|
T Consensus 111 ~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~-~PklLIlDEptSaLD 173 (252)
T COG1124 111 PHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIP-EPKLLILDEPTSALD 173 (252)
T ss_pred cCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhcc-CCCEEEecCchhhhc
Confidence 23455555552 234565555543 6777777 788999999988766
No 60
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.71 E-value=0.00021 Score=69.41 Aligned_cols=50 Identities=22% Similarity=0.418 Sum_probs=42.6
Q ss_pred CCcccccchHHHHHHHHHHhCCCCCcEE-EEEcCCCCcHHHHHHHHHHHhc
Q 045699 146 EGYEAFESRKSILNDALDALSNPNVDVI-GLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 146 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi-~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
....+++|.+..++.|.+++..+++... .++|+.|+||||+|+.+.+...
T Consensus 13 ~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Ln 63 (944)
T PRK14949 13 ATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLN 63 (944)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhcc
Confidence 3467789999999999998887777664 8999999999999999998864
No 61
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.71 E-value=0.0003 Score=57.53 Aligned_cols=88 Identities=17% Similarity=0.199 Sum_probs=56.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHh----cCC---CCCCCH---HHHH
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQL----SLN---ICEGSE---SERA 238 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~----~~~---~~~~~~---~~~~ 238 (266)
...++-|+|++|+|||+++..+..... .....++|+.... +++..+.+ ++.+. ... ....+. .+..
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~--~~g~~v~yi~~e~-~~~~rl~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 86 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAA--RQGKKVVYIDTEG-LSPERFKQ-IAEDRPERALSNFIVFEVFDFDEQGVAI 86 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEECCC-CCHHHHHH-HHHhChHHHhcCEEEEECCCHHHHHHHH
Confidence 468999999999999999999877654 2356889999876 66665543 33322 111 011122 2235
Q ss_pred HHHHHHHhcCCeEEEEEeCCCC
Q 045699 239 MMLCGQLKKGKKILFVLDNIWT 260 (266)
Q Consensus 239 ~~l~~~L~~~kr~LlvlDDvw~ 260 (266)
..+...+.+++.-+||+|-+..
T Consensus 87 ~~l~~~~~~~~~~lvVIDSis~ 108 (209)
T TIGR02237 87 QKTSKFIDRDSASLVVVDSFTA 108 (209)
T ss_pred HHHHHHHhhcCccEEEEeCcHH
Confidence 5555566543456899998754
No 62
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.70 E-value=0.00028 Score=69.55 Aligned_cols=48 Identities=17% Similarity=0.260 Sum_probs=42.1
Q ss_pred cccccchHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 148 YEAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 148 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
..+++||+.+++.+++.|.......+.++|++|+|||++|+.+.....
T Consensus 177 l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~ 224 (857)
T PRK10865 177 LDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRII 224 (857)
T ss_pred CCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhh
Confidence 467899999999999999876666777999999999999999988753
No 63
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.70 E-value=0.00029 Score=65.26 Aligned_cols=50 Identities=20% Similarity=0.317 Sum_probs=41.6
Q ss_pred CcccccchHHHHHHHHHHhCCCCCc-EEEEEcCCCCcHHHHHHHHHHHhcc
Q 045699 147 GYEAFESRKSILNDALDALSNPNVD-VIGLCGVGGIGKTTLAKIVCDQAKK 196 (266)
Q Consensus 147 ~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~G~GKTtLa~~v~~~~~~ 196 (266)
...+++|.+..++.|..++...++. .+.++|+.|+||||+|+.+.+....
T Consensus 12 ~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c 62 (504)
T PRK14963 12 TFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNC 62 (504)
T ss_pred CHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 3567899999889998888766654 4599999999999999999888754
No 64
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.69 E-value=0.00049 Score=55.92 Aligned_cols=94 Identities=17% Similarity=0.241 Sum_probs=60.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEE-------------------eCCCCC---------------
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVE-------------------VSRTPD--------------- 213 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~-------------------v~~~~~--------------- 213 (266)
....|+.|+|++|+|||||.+.+..-.... ...+|+. |=|.|+
T Consensus 26 ~~Gevv~iiGpSGSGKSTlLRclN~LE~~~---~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap 102 (240)
T COG1126 26 EKGEVVVIIGPSGSGKSTLLRCLNGLEEPD---SGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAP 102 (240)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCcCCC---CceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhh
Confidence 457899999999999999999997653322 3344441 112221
Q ss_pred ----------HHHHHHHHHHHhcCC-----C-CCCCH-HHHHHHHHHHHhcCCeEEEEEeCCCCCCCCC
Q 045699 214 ----------VKRIQGDVADQLSLN-----I-CEGSE-SERAMMLCGQLKKGKKILFVLDNIWTSLDLE 265 (266)
Q Consensus 214 ----------~~~~~~~i~~~~~~~-----~-~~~~~-~~~~~~l~~~L~~~kr~LlvlDDvw~~~~~~ 265 (266)
.++...+++..++.. + ...|. ++..-.|.+.|.- +.-++++|++.+.+|.|
T Consensus 103 ~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM-~P~vmLFDEPTSALDPE 170 (240)
T COG1126 103 VKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAM-DPKVMLFDEPTSALDPE 170 (240)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcC-CCCEEeecCCcccCCHH
Confidence 334444556666552 1 23343 3334457888887 88899999999998854
No 65
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.68 E-value=0.00015 Score=65.29 Aligned_cols=48 Identities=27% Similarity=0.371 Sum_probs=37.8
Q ss_pred cccccchHHHHHHHHHHhC----C---------CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 148 YEAFESRKSILNDALDALS----N---------PNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 148 ~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
+.++.|++..+++|.+.+. . ...+-|.++|++|+|||++|+.+++...
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~ 190 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN 190 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhC
Confidence 4567899988888877542 1 2346689999999999999999999764
No 66
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=0.00023 Score=65.70 Aligned_cols=92 Identities=17% Similarity=0.257 Sum_probs=58.5
Q ss_pred cccccchHHHHHHHHHHhC---CC---------CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHH
Q 045699 148 YEAFESRKSILNDALDALS---NP---------NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVK 215 (266)
Q Consensus 148 ~~~~~gr~~~~~~l~~~l~---~~---------~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~ 215 (266)
..++.|.+..+.+|.+++. .+ ..+=+.++|+.|||||.||+.+.+...+- ++.++.+
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vP-------f~~isAp---- 257 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVP-------FLSISAP---- 257 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCc-------eEeecch----
Confidence 4456788877777766542 21 24557899999999999999999987642 3344432
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCC
Q 045699 216 RIQGDVADQLSLNICEGSESERAMMLCGQLKKGKKILFVLDNIW 259 (266)
Q Consensus 216 ~~~~~i~~~~~~~~~~~~~~~~~~~l~~~L~~~kr~LlvlDDvw 259 (266)
+|+... .+.++..+.....+.... -.|++++||+.
T Consensus 258 ----eivSGv----SGESEkkiRelF~~A~~~-aPcivFiDeID 292 (802)
T KOG0733|consen 258 ----EIVSGV----SGESEKKIRELFDQAKSN-APCIVFIDEID 292 (802)
T ss_pred ----hhhccc----CcccHHHHHHHHHHHhcc-CCeEEEeeccc
Confidence 222222 233444443444445555 88999999875
No 67
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.66 E-value=9.4e-05 Score=65.97 Aligned_cols=48 Identities=27% Similarity=0.367 Sum_probs=38.0
Q ss_pred cccccchHHHHHHHHHHhC----C---------CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 148 YEAFESRKSILNDALDALS----N---------PNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 148 ~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
+.++.|++..++.|.+.+. . ...+-+.++|++|+|||+||+.+++...
T Consensus 121 ~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~ 181 (364)
T TIGR01242 121 YEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN 181 (364)
T ss_pred HHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCC
Confidence 4567899998888877652 1 1245689999999999999999999764
No 68
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.66 E-value=0.00045 Score=55.09 Aligned_cols=88 Identities=22% Similarity=0.242 Sum_probs=52.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhc-c--cc---CCCeEEEEEeCCCCCHHHHHHHHHHHhcCC-------CCCCCH
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAK-K--LK---VCDEVVFVEVSRTPDVKRIQGDVADQLSLN-------ICEGSE 234 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~-~--~~---~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~-------~~~~~~ 234 (266)
..-.+++|+|++|+|||||.+.+..+.. + .. .|...-...+.+ .+.+..++.. ....+.
T Consensus 19 ~~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q--------~~~l~~~~L~~~~~~~~~~~LSg 90 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQ--------LQFLIDVGLGYLTLGQKLSTLSG 90 (176)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhH--------HHHHHHcCCCccccCCCcCcCCH
Confidence 3567999999999999999999964311 1 00 111101112222 3556666542 122343
Q ss_pred HH-HHHHHHHHHhcCC--eEEEEEeCCCCCCCC
Q 045699 235 SE-RAMMLCGQLKKGK--KILFVLDNIWTSLDL 264 (266)
Q Consensus 235 ~~-~~~~l~~~L~~~k--r~LlvlDDvw~~~~~ 264 (266)
.+ ..-.+...|-. + .=+++||+..+..|.
T Consensus 91 Gq~qrl~laral~~-~~~p~llLlDEPt~~LD~ 122 (176)
T cd03238 91 GELQRVKLASELFS-EPPGTLFILDEPSTGLHQ 122 (176)
T ss_pred HHHHHHHHHHHHhh-CCCCCEEEEeCCcccCCH
Confidence 33 33345666666 7 789999999887764
No 69
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.66 E-value=0.00061 Score=52.72 Aligned_cols=40 Identities=30% Similarity=0.379 Sum_probs=31.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCC
Q 045699 172 VIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPD 213 (266)
Q Consensus 172 vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~ 213 (266)
++.|+|++|+||||++..+...... .-..++|+.......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~--~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIAT--KGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHh--cCCEEEEEECCcchH
Confidence 4689999999999999999887642 345677887766543
No 70
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.65 E-value=0.00017 Score=61.30 Aligned_cols=26 Identities=35% Similarity=0.337 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
....+.++|++|+||||+|+.+.+..
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHH
Confidence 45678899999999999999998864
No 71
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.64 E-value=0.00049 Score=63.30 Aligned_cols=49 Identities=20% Similarity=0.361 Sum_probs=40.5
Q ss_pred CcccccchHHHHHHHHHHhCCCCC-cEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 147 GYEAFESRKSILNDALDALSNPNV-DVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 147 ~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
...+++|.+..+..|...+..+++ ..+-++|+.|+||||+|+.+.+...
T Consensus 12 ~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~ 61 (472)
T PRK14962 12 TFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLN 61 (472)
T ss_pred CHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 466789998888888888776666 4578999999999999999988754
No 72
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.62 E-value=0.00042 Score=68.45 Aligned_cols=48 Identities=19% Similarity=0.277 Sum_probs=41.6
Q ss_pred cccccchHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 148 YEAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 148 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
..+++||+.+++.++..|.......+.++|++|+|||++++.+.....
T Consensus 172 ~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~ 219 (852)
T TIGR03346 172 LDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIV 219 (852)
T ss_pred CCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHh
Confidence 456899999999999998776667777999999999999999988753
No 73
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.61 E-value=0.00068 Score=60.45 Aligned_cols=49 Identities=24% Similarity=0.389 Sum_probs=40.9
Q ss_pred CcccccchHHHHHHHHHHhCCCCCc-EEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 147 GYEAFESRKSILNDALDALSNPNVD-VIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 147 ~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
...+++|.+..++.+.+.+...++. .+.++|+.|+||||+|+.+.+...
T Consensus 14 ~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 14 YFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred chhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence 4667899999999998888765554 568999999999999999988764
No 74
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.61 E-value=6.1e-05 Score=55.91 Aligned_cols=24 Identities=42% Similarity=0.538 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 172 VIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 172 vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
+|.|.|+.|+||||+|+.+.+...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~ 24 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG 24 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
Confidence 689999999999999999998753
No 75
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=97.60 E-value=0.00013 Score=66.50 Aligned_cols=98 Identities=19% Similarity=0.195 Sum_probs=62.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhcccc---------CCC-----------eEEEE--Ee---CCCCCHHHHHHHHH
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLK---------VCD-----------EVVFV--EV---SRTPDVKRIQGDVA 222 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---------~f~-----------~~~wv--~v---~~~~~~~~~~~~i~ 222 (266)
+--..|++||++|+|||||.+.+|.+..... +|. ...|. .+ -......+..+.|+
T Consensus 414 d~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~il 493 (614)
T KOG0927|consen 414 DLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSIL 493 (614)
T ss_pred CcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHH
Confidence 3457899999999999999999999864321 111 00111 00 00124556778888
Q ss_pred HHhcCC-------CCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCCCCCC
Q 045699 223 DQLSLN-------ICEGSESERAMMLCGQLKKGKKILFVLDNIWTSLDLE 265 (266)
Q Consensus 223 ~~~~~~-------~~~~~~~~~~~~l~~~L~~~kr~LlvlDDvw~~~~~~ 265 (266)
..+|.. +...|..+....+...+.-...-|||||+..|..|.+
T Consensus 494 grfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~ 543 (614)
T KOG0927|consen 494 GRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIE 543 (614)
T ss_pred HHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCch
Confidence 888773 2234555555555555443278899999999998864
No 76
>PRK08116 hypothetical protein; Validated
Probab=97.60 E-value=0.00024 Score=60.64 Aligned_cols=74 Identities=20% Similarity=0.245 Sum_probs=45.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCe
Q 045699 171 DVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNICEGSESERAMMLCGQLKKGKK 250 (266)
Q Consensus 171 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~L~~~kr 250 (266)
.-+.++|..|+|||.||..+++....+ .-.+++++ ..+++..|...+.... ..+ ...+.+.+.+ -.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~--~~~v~~~~------~~~ll~~i~~~~~~~~-~~~----~~~~~~~l~~-~d 180 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEK--GVPVIFVN------FPQLLNRIKSTYKSSG-KED----ENEIIRSLVN-AD 180 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEE------HHHHHHHHHHHHhccc-ccc----HHHHHHHhcC-CC
Confidence 458899999999999999999987532 23445554 3445555555443211 111 1223444554 33
Q ss_pred EEEEEeCCC
Q 045699 251 ILFVLDNIW 259 (266)
Q Consensus 251 ~LlvlDDvw 259 (266)
||||||+-
T Consensus 181 -lLviDDlg 188 (268)
T PRK08116 181 -LLILDDLG 188 (268)
T ss_pred -EEEEeccc
Confidence 89999984
No 77
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.59 E-value=0.00041 Score=60.53 Aligned_cols=49 Identities=16% Similarity=0.213 Sum_probs=40.4
Q ss_pred CCcccccchHHHHHHHHHHhCCCCC-cEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 146 EGYEAFESRKSILNDALDALSNPNV-DVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 146 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
....+++|.+...+.+..++...+. ..+.++|+.|+||||+|+.+++..
T Consensus 18 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~ 67 (316)
T PHA02544 18 STIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV 67 (316)
T ss_pred CcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 3456789999999999998876554 566668999999999999999875
No 78
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.59 E-value=0.00054 Score=63.66 Aligned_cols=51 Identities=18% Similarity=0.341 Sum_probs=42.7
Q ss_pred cCCcccccchHHHHHHHHHHhCCCCCcE-EEEEcCCCCcHHHHHHHHHHHhc
Q 045699 145 SEGYEAFESRKSILNDALDALSNPNVDV-IGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 145 ~~~~~~~~gr~~~~~~l~~~l~~~~~~v-i~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
|....+++|.+..++.|.+++...++.. +.++|+.|+||||+|+.+.....
T Consensus 12 P~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 63 (509)
T PRK14958 12 PRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLN 63 (509)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhc
Confidence 3346778999999999999997766655 68999999999999999988764
No 79
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.55 E-value=0.00082 Score=62.70 Aligned_cols=50 Identities=24% Similarity=0.448 Sum_probs=41.0
Q ss_pred CCcccccchHHHHHHHHHHhCCCCCc-EEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 146 EGYEAFESRKSILNDALDALSNPNVD-VIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 146 ~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
....+++|.+..++.|...+...++. .+.++|+.|+||||+|+.+.+...
T Consensus 13 ~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~ 63 (546)
T PRK14957 13 QSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLN 63 (546)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34667899999999999888765554 477899999999999999988654
No 80
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.55 E-value=0.0004 Score=67.33 Aligned_cols=47 Identities=23% Similarity=0.304 Sum_probs=40.3
Q ss_pred cccccchHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 148 YEAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 148 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
..+++||+.+++.+++.|......-+.++|+.|+|||++|+.+....
T Consensus 185 ~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i 231 (758)
T PRK11034 185 IDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_pred CCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999998876555666789999999999999998864
No 81
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.54 E-value=0.00083 Score=56.82 Aligned_cols=75 Identities=23% Similarity=0.269 Sum_probs=49.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcC
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNICEGSESERAMMLCGQLKKG 248 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~L~~~ 248 (266)
+..-+.++|..|+|||.||..+.+... +..+ .+.+++ ..+++.++...... ......|.+.+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~-sv~f~~------~~el~~~Lk~~~~~-------~~~~~~l~~~l~-- 166 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL-KAGI-SVLFIT------APDLLSKLKAAFDE-------GRLEEKLLRELK-- 166 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH-HcCC-eEEEEE------HHHHHHHHHHHHhc-------CchHHHHHHHhh--
Confidence 678899999999999999999999987 3333 334443 44666666655533 112223444343
Q ss_pred CeEEEEEeCCCC
Q 045699 249 KKILFVLDNIWT 260 (266)
Q Consensus 249 kr~LlvlDDvw~ 260 (266)
+-=||||||+-.
T Consensus 167 ~~dlLIiDDlG~ 178 (254)
T COG1484 167 KVDLLIIDDIGY 178 (254)
T ss_pred cCCEEEEecccC
Confidence 455888999765
No 82
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.53 E-value=0.00055 Score=51.86 Aligned_cols=88 Identities=24% Similarity=0.338 Sum_probs=52.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEE------------------EeCCCCC-----------HHHHHH
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFV------------------EVSRTPD-----------VKRIQG 219 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv------------------~v~~~~~-----------~~~~~~ 219 (266)
.-.+++|+|.+|+|||||.+.+...... ....+++ .+++... ...-..
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~~~~---~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~~~~~~~~ 86 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGLLPP---DSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRENESDERIE 86 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTSSHE---SEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHHHHHHHHH
T ss_pred CCCEEEEEccCCCccccceeeecccccc---ccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3578999999999999999999776432 1122211 2222211 122344
Q ss_pred HHHHHhcC------CC----CCCCHHHH-HHHHHHHHhcCCeEEEEEeCCCC
Q 045699 220 DVADQLSL------NI----CEGSESER-AMMLCGQLKKGKKILFVLDNIWT 260 (266)
Q Consensus 220 ~i~~~~~~------~~----~~~~~~~~-~~~l~~~L~~~kr~LlvlDDvw~ 260 (266)
.+++.++. .. ...+..+. .-.|...|-. +.-+++|||..+
T Consensus 87 ~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~-~~~llllDEPt~ 137 (137)
T PF00005_consen 87 EVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLK-NPKLLLLDEPTN 137 (137)
T ss_dssp HHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHT-TSSEEEEESTTT
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHHHHHHc-CCCEEEEeCCCC
Confidence 55555543 12 34454333 3445666776 888999999754
No 83
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.52 E-value=0.00066 Score=56.23 Aligned_cols=88 Identities=22% Similarity=0.225 Sum_probs=55.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHH----hcCC---CCCCCHHH---H
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQ----LSLN---ICEGSESE---R 237 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~----~~~~---~~~~~~~~---~ 237 (266)
....++.|+|.+|+|||+|+..+..... ..-..++|++.. .++...+. +++.. +..+ ....+..+ .
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~~~--~~~~~v~yi~~e-~~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVEAA--KNGKKVIYIDTE-GLSPERFK-QIAGEDFEELLSNIIIFEPSSFEEQSEA 96 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEECC-CCCHHHHH-HHHhhChHhHhhCeEEEeCCCHHHHHHH
Confidence 3467999999999999999999987654 234678899887 56655543 33322 1000 11222222 2
Q ss_pred HHHHHHHHhcCCeEEEEEeCCCC
Q 045699 238 AMMLCGQLKKGKKILFVLDNIWT 260 (266)
Q Consensus 238 ~~~l~~~L~~~kr~LlvlDDvw~ 260 (266)
...+...+.. +--+||+|.+..
T Consensus 97 i~~~~~~~~~-~~~lvVIDsi~a 118 (225)
T PRK09361 97 IRKAEKLAKE-NVGLIVLDSATS 118 (225)
T ss_pred HHHHHHHHHh-cccEEEEeCcHH
Confidence 3344444545 777999999853
No 84
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.52 E-value=0.00057 Score=63.49 Aligned_cols=48 Identities=27% Similarity=0.332 Sum_probs=33.9
Q ss_pred cccccchHHHHHHHHHH---hCC---------CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 148 YEAFESRKSILNDALDA---LSN---------PNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 148 ~~~~~gr~~~~~~l~~~---l~~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
..++.|.+..++++.++ +.. ...+-+.++|++|+|||+||+.+.+...
T Consensus 54 ~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~ 113 (495)
T TIGR01241 54 FKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG 113 (495)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC
Confidence 55677877666555443 321 1234588999999999999999988754
No 85
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.51 E-value=0.00029 Score=64.32 Aligned_cols=51 Identities=20% Similarity=0.333 Sum_probs=42.5
Q ss_pred cCCcccccchHHHHHHHHHHhCCCCCc-EEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 145 SEGYEAFESRKSILNDALDALSNPNVD-VIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 145 ~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
+....+++|.+..+..|..++...++. .+.++|+.|+||||+|+.+.+...
T Consensus 14 P~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Ln 65 (484)
T PRK14956 14 PQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLN 65 (484)
T ss_pred CCCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 334667899999999999888777665 479999999999999999988764
No 86
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.51 E-value=0.0018 Score=51.70 Aligned_cols=92 Identities=23% Similarity=0.379 Sum_probs=56.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEE---EeCCCCCHHHHHH------HHHHHhcC------CCCCC
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFV---EVSRTPDVKRIQG------DVADQLSL------NICEG 232 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv---~v~~~~~~~~~~~------~i~~~~~~------~~~~~ 232 (266)
..-.+++|+|.+|+|||||++.+..... .....+++ .+. ..+...+.. ++++.++. .....
T Consensus 23 ~~G~~~~l~G~nGsGKStLl~~i~G~~~---~~~G~v~~~g~~~~-~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~L 98 (180)
T cd03214 23 EAGEIVGILGPNGAGKSTLLKTLAGLLK---PSSGEILLDGKDLA-SLSPKELARKIAYVPQALELLGLAHLADRPFNEL 98 (180)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECC-cCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccC
Confidence 3567999999999999999999988643 23344443 222 112222221 24555544 12234
Q ss_pred CHHH-HHHHHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699 233 SESE-RAMMLCGQLKKGKKILFVLDNIWTSLDL 264 (266)
Q Consensus 233 ~~~~-~~~~l~~~L~~~kr~LlvlDDvw~~~~~ 264 (266)
+..+ ..-.+...|-. ..-+++||+..+.+|.
T Consensus 99 S~G~~qrl~laral~~-~p~llllDEP~~~LD~ 130 (180)
T cd03214 99 SGGERQRVLLARALAQ-EPPILLLDEPTSHLDI 130 (180)
T ss_pred CHHHHHHHHHHHHHhc-CCCEEEEeCCccCCCH
Confidence 4333 33445666666 7889999999988764
No 87
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.50 E-value=0.00068 Score=59.07 Aligned_cols=87 Identities=22% Similarity=0.292 Sum_probs=58.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCC------CCCCHHHHHHHH
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNI------CEGSESERAMML 241 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~l 241 (266)
+.-+++-|+|+.|+||||||..+..... ..-..++|+...+.+++. .+++++.+. ...+.++....+
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~~~--~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAEAQ--KAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 3567999999999999999988776654 234567788877766653 355555522 122445555556
Q ss_pred HHHHhcCCeEEEEEeCCCCC
Q 045699 242 CGQLKKGKKILFVLDNIWTS 261 (266)
Q Consensus 242 ~~~L~~~kr~LlvlDDvw~~ 261 (266)
...++.+.--+||+|-|-..
T Consensus 126 ~~li~~~~~~lIVIDSv~al 145 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSVAAL 145 (321)
T ss_pred HHHhhccCCcEEEEcchhhh
Confidence 55565546678999987643
No 88
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.49 E-value=0.0003 Score=56.22 Aligned_cols=75 Identities=27% Similarity=0.354 Sum_probs=43.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcC
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNICEGSESERAMMLCGQLKKG 248 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~L~~~ 248 (266)
+..-+.++|+.|+|||.||..+.+....+ . -.+.|+++ .+++..|- ......+.. .+.+.+.
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~-g-~~v~f~~~------~~L~~~l~----~~~~~~~~~----~~~~~l~-- 107 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRK-G-YSVLFITA------SDLLDELK----QSRSDGSYE----ELLKRLK-- 107 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHT-T---EEEEEH------HHHHHHHH----CCHCCTTHC----HHHHHHH--
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccC-C-cceeEeec------Cceecccc----ccccccchh----hhcCccc--
Confidence 34679999999999999999999876532 2 23455543 34444443 222222222 2334444
Q ss_pred CeEEEEEeCCCCC
Q 045699 249 KKILFVLDNIWTS 261 (266)
Q Consensus 249 kr~LlvlDDvw~~ 261 (266)
+-=||||||+-..
T Consensus 108 ~~dlLilDDlG~~ 120 (178)
T PF01695_consen 108 RVDLLILDDLGYE 120 (178)
T ss_dssp TSSCEEEETCTSS
T ss_pred cccEeccccccee
Confidence 3457889998643
No 89
>PRK06696 uridine kinase; Validated
Probab=97.49 E-value=0.00023 Score=59.00 Aligned_cols=43 Identities=23% Similarity=0.356 Sum_probs=34.4
Q ss_pred chHHHHHHHHHHhC---CCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 153 SRKSILNDALDALS---NPNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 153 gr~~~~~~l~~~l~---~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
.|...++.|.+.+. .....+|+|.|.+|+||||||+.+.....
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~ 47 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIK 47 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35566667766653 45678999999999999999999998764
No 90
>PRK12377 putative replication protein; Provisional
Probab=97.49 E-value=0.00045 Score=58.14 Aligned_cols=75 Identities=23% Similarity=0.240 Sum_probs=46.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcC
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNICEGSESERAMMLCGQLKKG 248 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~L~~~ 248 (266)
....+.++|..|+|||+||..+.+.... ..-.+++++++ +++..|-..... ..+.. .+.+.+.
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~~--~g~~v~~i~~~------~l~~~l~~~~~~---~~~~~----~~l~~l~-- 162 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLLA--KGRSVIVVTVP------DVMSRLHESYDN---GQSGE----KFLQELC-- 162 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHHH--cCCCeEEEEHH------HHHHHHHHHHhc---cchHH----HHHHHhc--
Confidence 3468899999999999999999998763 23334555543 455544443321 11111 2333443
Q ss_pred CeEEEEEeCCCC
Q 045699 249 KKILFVLDNIWT 260 (266)
Q Consensus 249 kr~LlvlDDvw~ 260 (266)
+--||||||+-.
T Consensus 163 ~~dLLiIDDlg~ 174 (248)
T PRK12377 163 KVDLLVLDEIGI 174 (248)
T ss_pred CCCEEEEcCCCC
Confidence 567899999843
No 91
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.49 E-value=0.00082 Score=64.33 Aligned_cols=50 Identities=20% Similarity=0.404 Sum_probs=41.3
Q ss_pred CCcccccchHHHHHHHHHHhCCCCCc-EEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 146 EGYEAFESRKSILNDALDALSNPNVD-VIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 146 ~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
....+++|.+..++.|.+++..+++. .+.++|..|+||||+|+.+.+...
T Consensus 13 qtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLn 63 (830)
T PRK07003 13 KDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALN 63 (830)
T ss_pred CcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34677899999999999998776654 457999999999999998887754
No 92
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.48 E-value=0.00075 Score=56.13 Aligned_cols=49 Identities=16% Similarity=0.257 Sum_probs=39.5
Q ss_pred cccccchHHHHHHHHHH----hCCCCCcEEEEEcCCCCcHHHHHHHHHHHhcc
Q 045699 148 YEAFESRKSILNDALDA----LSNPNVDVIGLCGVGGIGKTTLAKIVCDQAKK 196 (266)
Q Consensus 148 ~~~~~gr~~~~~~l~~~----l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 196 (266)
...++|.+..++.|++- +.......+.++|..|+|||+|++.+.+....
T Consensus 26 l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~ 78 (249)
T PF05673_consen 26 LDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYAD 78 (249)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhh
Confidence 56688988888777653 44556788899999999999999999987653
No 93
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.48 E-value=0.00097 Score=52.61 Aligned_cols=95 Identities=21% Similarity=0.162 Sum_probs=55.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhcccc---CCCe-EEEEEeCCCCCHHHHHHHHHHHhcC-CCCCCCHHH-HHHHH
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLK---VCDE-VVFVEVSRTPDVKRIQGDVADQLSL-NICEGSESE-RAMML 241 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~f~~-~~wv~v~~~~~~~~~~~~i~~~~~~-~~~~~~~~~-~~~~l 241 (266)
..-.+++|+|++|+|||||++.+........ .++. ..-..+++.+.... ..+.+.+.. .....|..+ ..-.+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~--~tv~~nl~~~~~~~LS~G~~~rv~l 102 (166)
T cd03223 25 KPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPL--GTLREQLIYPWDDVLSGGEQQRLAF 102 (166)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCcccc--ccHHHHhhccCCCCCCHHHHHHHHH
Confidence 3567999999999999999999988754221 1111 11123344432211 122222221 233445333 33445
Q ss_pred HHHHhcCCeEEEEEeCCCCCCCCC
Q 045699 242 CGQLKKGKKILFVLDNIWTSLDLE 265 (266)
Q Consensus 242 ~~~L~~~kr~LlvlDDvw~~~~~~ 265 (266)
...|-. +.=+++||+..+..|.+
T Consensus 103 aral~~-~p~~lllDEPt~~LD~~ 125 (166)
T cd03223 103 ARLLLH-KPKFVFLDEATSALDEE 125 (166)
T ss_pred HHHHHc-CCCEEEEECCccccCHH
Confidence 666666 78899999999887753
No 94
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.47 E-value=0.0002 Score=60.43 Aligned_cols=50 Identities=24% Similarity=0.347 Sum_probs=41.5
Q ss_pred cccccchHHHHHHHHHHhC-----CCCCcEEEEEcCCCCcHHHHHHHHHHHhccc
Q 045699 148 YEAFESRKSILNDALDALS-----NPNVDVIGLCGVGGIGKTTLAKIVCDQAKKL 197 (266)
Q Consensus 148 ~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~ 197 (266)
..+|+|.++.+++|.=.+. +..+..+.++|++|.||||||..+.+...++
T Consensus 25 l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn 79 (332)
T COG2255 25 LDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVN 79 (332)
T ss_pred HHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCC
Confidence 5678999888887755543 4568999999999999999999999987653
No 95
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.47 E-value=0.0011 Score=59.85 Aligned_cols=50 Identities=20% Similarity=0.326 Sum_probs=41.7
Q ss_pred CcccccchHHHHHHHHHHhCCCCCcE-EEEEcCCCCcHHHHHHHHHHHhcc
Q 045699 147 GYEAFESRKSILNDALDALSNPNVDV-IGLCGVGGIGKTTLAKIVCDQAKK 196 (266)
Q Consensus 147 ~~~~~~gr~~~~~~l~~~l~~~~~~v-i~I~G~~G~GKTtLa~~v~~~~~~ 196 (266)
...+++|.+..++.|.+++...++.. +.++|+.|+||||+|+.+.+....
T Consensus 14 ~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c 64 (397)
T PRK14955 14 KFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (397)
T ss_pred cHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 46678899999999988887766654 889999999999999999887643
No 96
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.45 E-value=0.00087 Score=57.61 Aligned_cols=87 Identities=21% Similarity=0.183 Sum_probs=46.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCC-CCHHHHHHHHHHHhcCCCCC-CCHHHHHHHHHHHHh
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRT-PDVKRIQGDVADQLSLNICE-GSESERAMMLCGQLK 246 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~-~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~l~~~L~ 246 (266)
...++.++|++|+||||++..+......+..-..+..++.... ....+.+..-...++.+... .+..++...+. .+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~-~~~ 271 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALD-RLR 271 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHH-Hcc
Confidence 4579999999999999999988776643211123445554321 12223333334444444332 23334433333 333
Q ss_pred cCCeEEEEEeCC
Q 045699 247 KGKKILFVLDNI 258 (266)
Q Consensus 247 ~~kr~LlvlDDv 258 (266)
+ . =+|++|..
T Consensus 272 ~-~-d~vliDt~ 281 (282)
T TIGR03499 272 D-K-DLILIDTA 281 (282)
T ss_pred C-C-CEEEEeCC
Confidence 3 3 47777753
No 97
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.45 E-value=0.00058 Score=62.42 Aligned_cols=76 Identities=17% Similarity=0.273 Sum_probs=46.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhccccCCC-eEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcC
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCD-EVVFVEVSRTPDVKRIQGDVADQLSLNICEGSESERAMMLCGQLKKG 248 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~-~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~L~~~ 248 (266)
...+.|+|+.|+|||+|++.+.+.... .+.+ .+.|++. .+++.++...+... +. ..+.+.+..
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~-~~~~~~v~yi~~------~~f~~~~~~~~~~~----~~----~~f~~~~~~- 193 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQ-NEPDLRVMYITS------EKFLNDLVDSMKEG----KL----NEFREKYRK- 193 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHH-hCCCCeEEEEEH------HHHHHHHHHHHhcc----cH----HHHHHHHHh-
Confidence 456999999999999999999998652 2233 3455543 35555665555321 11 122333333
Q ss_pred CeEEEEEeCCCCC
Q 045699 249 KKILFVLDNIWTS 261 (266)
Q Consensus 249 kr~LlvlDDvw~~ 261 (266)
+.-+|+|||+...
T Consensus 194 ~~dvLlIDDi~~l 206 (440)
T PRK14088 194 KVDVLLIDDVQFL 206 (440)
T ss_pred cCCEEEEechhhh
Confidence 4457777777643
No 98
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.45 E-value=0.00063 Score=52.37 Aligned_cols=28 Identities=39% Similarity=0.608 Sum_probs=24.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
..-.+++|+|.+|+|||||++.+....+
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~ 51 (144)
T cd03221 24 NPGDRIGLVGRNGAGKSTLLKLIAGELE 51 (144)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 3468999999999999999999988653
No 99
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.45 E-value=0.001 Score=56.05 Aligned_cols=93 Identities=27% Similarity=0.392 Sum_probs=55.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhcccc---CCCe--EEEEEeCCC------CCHHHHH--------------HHHHH
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLK---VCDE--VVFVEVSRT------PDVKRIQ--------------GDVAD 223 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~f~~--~~wv~v~~~------~~~~~~~--------------~~i~~ 223 (266)
.-.+++|+|.+|+|||||++.+........ .++. +.++ ++. .+..+.+ .+++.
T Consensus 24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~--~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~ 101 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYK--PQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAK 101 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEe--cccccCCCCCCHHHHHHHHhhhccccHHHHHHHHH
Confidence 457999999999999999999988643221 1221 2222 222 1222222 23344
Q ss_pred HhcCC------CCCCCHHHHH-HHHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699 224 QLSLN------ICEGSESERA-MMLCGQLKKGKKILFVLDNIWTSLDL 264 (266)
Q Consensus 224 ~~~~~------~~~~~~~~~~-~~l~~~L~~~kr~LlvlDDvw~~~~~ 264 (266)
.++.. ....|..+.+ -.|...|.. +.=+++||+..+.+|.
T Consensus 102 ~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~-~p~llllDEPt~~LD~ 148 (246)
T cd03237 102 PLQIEQILDREVPELSGGELQRVAIAACLSK-DADIYLLDEPSAYLDV 148 (246)
T ss_pred HcCCHHHhhCChhhCCHHHHHHHHHHHHHhc-CCCEEEEeCCcccCCH
Confidence 44331 2234543333 346667776 7889999999988875
No 100
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.45 E-value=0.00096 Score=62.96 Aligned_cols=50 Identities=20% Similarity=0.404 Sum_probs=42.0
Q ss_pred CCcccccchHHHHHHHHHHhCCCCCcE-EEEEcCCCCcHHHHHHHHHHHhc
Q 045699 146 EGYEAFESRKSILNDALDALSNPNVDV-IGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 146 ~~~~~~~gr~~~~~~l~~~l~~~~~~v-i~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
....+++|.+..++.|.+++..+++.. +.++|..|+||||+|+.+.+...
T Consensus 13 qtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLn 63 (700)
T PRK12323 13 RDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLN 63 (700)
T ss_pred CcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 346678999999999999998777654 58899999999999999988764
No 101
>PRK09354 recA recombinase A; Provisional
Probab=97.45 E-value=0.00093 Score=58.76 Aligned_cols=87 Identities=22% Similarity=0.295 Sum_probs=60.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCC------CCCCHHHHHHHH
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNI------CEGSESERAMML 241 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~l 241 (266)
+.-+++-|+|+.|+|||||+.++..... ..-..++|+.....+++. .+++++.+. ...+.++....+
T Consensus 58 p~G~IteI~G~~GsGKTtLal~~~~~~~--~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~ 130 (349)
T PRK09354 58 PRGRIVEIYGPESSGKTTLALHAIAEAQ--KAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIA 130 (349)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 3467999999999999999999876654 234678899888877753 455565532 122455555566
Q ss_pred HHHHhcCCeEEEEEeCCCCC
Q 045699 242 CGQLKKGKKILFVLDNIWTS 261 (266)
Q Consensus 242 ~~~L~~~kr~LlvlDDvw~~ 261 (266)
...++.++--+||+|-|-..
T Consensus 131 ~~li~s~~~~lIVIDSvaaL 150 (349)
T PRK09354 131 DTLVRSGAVDLIVVDSVAAL 150 (349)
T ss_pred HHHhhcCCCCEEEEeChhhh
Confidence 66666556778999988654
No 102
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.45 E-value=0.00085 Score=58.50 Aligned_cols=87 Identities=23% Similarity=0.321 Sum_probs=59.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCC------CCCCHHHHHHHH
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNI------CEGSESERAMML 241 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~l 241 (266)
+.-+++-|+|++|+||||||..+.-... ..-..++|+.....+++. .+.+++.+. ...+.++....+
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~~~~--~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAEAQ--KLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHH
Confidence 3467899999999999999999876654 234578899888777653 345555421 122455555566
Q ss_pred HHHHhcCCeEEEEEeCCCCC
Q 045699 242 CGQLKKGKKILFVLDNIWTS 261 (266)
Q Consensus 242 ~~~L~~~kr~LlvlDDvw~~ 261 (266)
...++.+.--+||+|-|-..
T Consensus 126 ~~li~s~~~~lIVIDSvaal 145 (325)
T cd00983 126 DSLVRSGAVDLIVVDSVAAL 145 (325)
T ss_pred HHHHhccCCCEEEEcchHhh
Confidence 55565546678999987644
No 103
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=97.43 E-value=0.00069 Score=63.04 Aligned_cols=28 Identities=39% Similarity=0.583 Sum_probs=24.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
.....||+||.+|+|||||.+.+.....
T Consensus 27 ~~G~riGLvG~NGaGKSTLLkilaG~~~ 54 (530)
T COG0488 27 NPGERIGLVGRNGAGKSTLLKILAGELE 54 (530)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCCc
Confidence 3567899999999999999999988753
No 104
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.43 E-value=0.00071 Score=60.92 Aligned_cols=48 Identities=25% Similarity=0.263 Sum_probs=36.6
Q ss_pred cccccchHHHHHHHHHHhC----C---------CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 148 YEAFESRKSILNDALDALS----N---------PNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 148 ~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
+.++.|.+..++.|.+.+. . ...+-+.++|+.|+|||+||+.+.+...
T Consensus 144 ~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~ 204 (398)
T PTZ00454 144 YSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTT 204 (398)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC
Confidence 5567888877777765542 1 2356788999999999999999998754
No 105
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.43 E-value=0.0018 Score=52.63 Aligned_cols=57 Identities=23% Similarity=0.245 Sum_probs=35.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCC-CCHHHHHHHHHHHhcCC
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRT-PDVKRIQGDVADQLSLN 228 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~-~~~~~~~~~i~~~~~~~ 228 (266)
.++|.+||+.|+||||.+-.+......+ -..+..++.... ....+-++..++.++.+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp 58 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVP 58 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccc
Confidence 3689999999999988666666555432 234556665422 23445556666666654
No 106
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.42 E-value=0.0024 Score=52.81 Aligned_cols=92 Identities=17% Similarity=0.208 Sum_probs=58.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhcccc----CCCeEEEEEeCCCCCHHHHHHHHHHHhcCC----------CCCCCH
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLK----VCDEVVFVEVSRTPDVKRIQGDVADQLSLN----------ICEGSE 234 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~----~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~----------~~~~~~ 234 (266)
...++.|+|.+|+|||+|+..+........ .-..++|+.....++...+. .+.+..+.. ....+.
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~~ 96 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARPYNG 96 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeCCCH
Confidence 468999999999999999999876643111 11567899888877766543 444443221 012244
Q ss_pred HHHHHHHHHHHh---cCCeEEEEEeCCCCC
Q 045699 235 SERAMMLCGQLK---KGKKILFVLDNIWTS 261 (266)
Q Consensus 235 ~~~~~~l~~~L~---~~kr~LlvlDDvw~~ 261 (266)
+++...+...+. .++--|||+|.+...
T Consensus 97 ~~~~~~l~~~~~~~~~~~~~lvVIDsis~l 126 (226)
T cd01393 97 EQQLEIVEELERIMSSGRVDLVVVDSVAAL 126 (226)
T ss_pred HHHHHHHHHHHHHhhcCCeeEEEEcCcchh
Confidence 555555555443 435569999998654
No 107
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.42 E-value=0.0014 Score=54.89 Aligned_cols=52 Identities=21% Similarity=0.340 Sum_probs=36.5
Q ss_pred HHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCC
Q 045699 157 ILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSR 210 (266)
Q Consensus 157 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~ 210 (266)
.+..+.++........+.|+|+.|+|||+|++.+++.... .-..+.|+++..
T Consensus 32 a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~--~~~~v~y~~~~~ 83 (235)
T PRK08084 32 LLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQ--RGRAVGYVPLDK 83 (235)
T ss_pred HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHh--CCCeEEEEEHHH
Confidence 4455555544455578999999999999999999987652 223455666643
No 108
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.42 E-value=0.00043 Score=54.47 Aligned_cols=28 Identities=39% Similarity=0.472 Sum_probs=24.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
..-.+++|+|++|+|||||.+.+.....
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 51 (163)
T cd03216 24 RRGEVHALLGENGAGKSTLMKILSGLYK 51 (163)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3567999999999999999999987643
No 109
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.40 E-value=0.002 Score=54.03 Aligned_cols=89 Identities=27% Similarity=0.353 Sum_probs=51.4
Q ss_pred HHHHHHHHhCC--CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCH
Q 045699 157 ILNDALDALSN--PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNICEGSE 234 (266)
Q Consensus 157 ~~~~l~~~l~~--~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~~~~ 234 (266)
.+..+.++..+ .....+.++|.+|+|||+||..+.+....+ -..+++++ ..+++..+-..... ...+.
T Consensus 84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~--g~~v~~it------~~~l~~~l~~~~~~--~~~~~ 153 (244)
T PRK07952 84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLR--GKSVLIIT------VADIMSAMKDTFSN--SETSE 153 (244)
T ss_pred HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEE------HHHHHHHHHHHHhh--ccccH
Confidence 34444444432 224578899999999999999999987532 23444543 34555555444321 11122
Q ss_pred HHHHHHHHHHHhcCCeEEEEEeCCCCC
Q 045699 235 SERAMMLCGQLKKGKKILFVLDNIWTS 261 (266)
Q Consensus 235 ~~~~~~l~~~L~~~kr~LlvlDDvw~~ 261 (266)
. .+.+.+. +.=||||||+-..
T Consensus 154 ~----~~l~~l~--~~dlLvIDDig~~ 174 (244)
T PRK07952 154 E----QLLNDLS--NVDLLVIDEIGVQ 174 (244)
T ss_pred H----HHHHHhc--cCCEEEEeCCCCC
Confidence 2 2334454 3447888998654
No 110
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.00098 Score=58.04 Aligned_cols=93 Identities=22% Similarity=0.307 Sum_probs=58.5
Q ss_pred cccccchHHHHHHHHHHhC----C---------CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCH
Q 045699 148 YEAFESRKSILNDALDALS----N---------PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDV 214 (266)
Q Consensus 148 ~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~ 214 (266)
+.++-|.+..+++|.+... + +..+=|.++|++|.|||-||++|.|+.. .. |+.|..+
T Consensus 150 Y~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~--At-----FIrvvgS--- 219 (406)
T COG1222 150 YEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTD--AT-----FIRVVGS--- 219 (406)
T ss_pred hhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccC--ce-----EEEeccH---
Confidence 6677888888888876652 1 2456788999999999999999999754 22 4444332
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCC
Q 045699 215 KRIQGDVADQLSLNICEGSESERAMMLCGQLKKGKKILFVLDNIWT 260 (266)
Q Consensus 215 ~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~L~~~kr~LlvlDDvw~ 260 (266)
++.+.. ......+...+...-+....++|++|+|..
T Consensus 220 -----ElVqKY-----iGEGaRlVRelF~lArekaPsIIFiDEIDA 255 (406)
T COG1222 220 -----ELVQKY-----IGEGARLVRELFELAREKAPSIIFIDEIDA 255 (406)
T ss_pred -----HHHHHH-----hccchHHHHHHHHHHhhcCCeEEEEechhh
Confidence 111111 112233445555554444677788887753
No 111
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.39 E-value=0.00044 Score=55.00 Aligned_cols=36 Identities=36% Similarity=0.533 Sum_probs=28.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEE
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFV 206 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv 206 (266)
+..+|.+.|+.|+||||+|+.+++... ..+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~--~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLK--LKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHH--HcCCcEEEE
Confidence 457999999999999999999999875 334444444
No 112
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.39 E-value=0.002 Score=52.71 Aligned_cols=26 Identities=31% Similarity=0.530 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
.-.+++|+|++|+|||||++.+....
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 25 KGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 56789999999999999999998764
No 113
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.39 E-value=0.00078 Score=58.53 Aligned_cols=90 Identities=23% Similarity=0.268 Sum_probs=54.6
Q ss_pred chHHHHHHHHHHhCC----CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCC
Q 045699 153 SRKSILNDALDALSN----PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLN 228 (266)
Q Consensus 153 gr~~~~~~l~~~l~~----~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~ 228 (266)
++........+++.. ...+-+-++|..|+|||.||..+.+....+ . -.+.+++++ .++.++...+..
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~-g-~~v~~~~~~------~l~~~lk~~~~~- 205 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKK-G-VSSTLLHFP------EFIRELKNSISD- 205 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHc-C-CCEEEEEHH------HHHHHHHHHHhc-
Confidence 444444444555531 245678999999999999999999997622 2 234555553 555666555422
Q ss_pred CCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCC
Q 045699 229 ICEGSESERAMMLCGQLKKGKKILFVLDNIWT 260 (266)
Q Consensus 229 ~~~~~~~~~~~~l~~~L~~~kr~LlvlDDvw~ 260 (266)
.+.. ...+.+. +-=||||||+-.
T Consensus 206 ---~~~~----~~l~~l~--~~dlLiIDDiG~ 228 (306)
T PRK08939 206 ---GSVK----EKIDAVK--EAPVLMLDDIGA 228 (306)
T ss_pred ---CcHH----HHHHHhc--CCCEEEEecCCC
Confidence 1211 2223343 566899999854
No 114
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.38 E-value=0.00029 Score=61.99 Aligned_cols=46 Identities=15% Similarity=0.217 Sum_probs=39.9
Q ss_pred cccchHHHHHHHHHHhC------CCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 150 AFESRKSILNDALDALS------NPNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 150 ~~~gr~~~~~~l~~~l~------~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
++.|.++.++++++++. +...+++.++|+.|+||||||+.+.+...
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~ 103 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 68899999999998884 23468999999999999999999998875
No 115
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.38 E-value=0.0017 Score=60.73 Aligned_cols=49 Identities=22% Similarity=0.430 Sum_probs=40.9
Q ss_pred CcccccchHHHHHHHHHHhCCCCCcE-EEEEcCCCCcHHHHHHHHHHHhc
Q 045699 147 GYEAFESRKSILNDALDALSNPNVDV-IGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 147 ~~~~~~gr~~~~~~l~~~l~~~~~~v-i~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
...+++|.+..++.|.+++...++.. +.++|+.|+||||+|+.+.....
T Consensus 14 ~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 63 (527)
T PRK14969 14 SFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLN 63 (527)
T ss_pred cHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 45678999999999999887766654 57999999999999999987753
No 116
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.38 E-value=0.0011 Score=58.94 Aligned_cols=60 Identities=17% Similarity=0.130 Sum_probs=36.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCC-CCCHHHHHHHHHHHhcCC
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSR-TPDVKRIQGDVADQLSLN 228 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~i~~~~~~~ 228 (266)
+..++.++|+.|+||||++..+......+.....+..++... .....+-++...+.++.+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~ 196 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVP 196 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCc
Confidence 457999999999999999999987653221123444554322 123334445555555553
No 117
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.38 E-value=0.0019 Score=59.91 Aligned_cols=51 Identities=20% Similarity=0.340 Sum_probs=41.3
Q ss_pred CCcccccchHHHHHHHHHHhCCCCC-cEEEEEcCCCCcHHHHHHHHHHHhcc
Q 045699 146 EGYEAFESRKSILNDALDALSNPNV-DVIGLCGVGGIGKTTLAKIVCDQAKK 196 (266)
Q Consensus 146 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~~ 196 (266)
....+++|.+..+..|...+..+++ .-+-++|+.|+||||+|+.+.+....
T Consensus 18 ~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc 69 (507)
T PRK06645 18 SNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNC 69 (507)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3466789999988888887665543 67889999999999999999988643
No 118
>PRK08181 transposase; Validated
Probab=97.38 E-value=0.00049 Score=58.61 Aligned_cols=78 Identities=21% Similarity=0.111 Sum_probs=45.7
Q ss_pred HHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 045699 163 DALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNICEGSESERAMMLC 242 (266)
Q Consensus 163 ~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~ 242 (266)
+|+. ...-+.++|+.|+|||.||..+.+....+ .-.+.|++ ..+++..+.... ...+.. .+.
T Consensus 101 ~~~~--~~~nlll~Gp~GtGKTHLa~Aia~~a~~~--g~~v~f~~------~~~L~~~l~~a~----~~~~~~----~~l 162 (269)
T PRK08181 101 SWLA--KGANLLLFGPPGGGKSHLAAAIGLALIEN--GWRVLFTR------TTDLVQKLQVAR----RELQLE----SAI 162 (269)
T ss_pred HHHh--cCceEEEEecCCCcHHHHHHHHHHHHHHc--CCceeeee------HHHHHHHHHHHH----hCCcHH----HHH
Confidence 4554 34569999999999999999999876422 22344444 344555543322 111211 222
Q ss_pred HHHhcCCeEEEEEeCCCC
Q 045699 243 GQLKKGKKILFVLDNIWT 260 (266)
Q Consensus 243 ~~L~~~kr~LlvlDDvw~ 260 (266)
+.+. +-=||||||+-.
T Consensus 163 ~~l~--~~dLLIIDDlg~ 178 (269)
T PRK08181 163 AKLD--KFDLLILDDLAY 178 (269)
T ss_pred HHHh--cCCEEEEecccc
Confidence 3333 345888888843
No 119
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.35 E-value=0.0013 Score=62.17 Aligned_cols=50 Identities=18% Similarity=0.424 Sum_probs=40.9
Q ss_pred CCcccccchHHHHHHHHHHhCCCCC-cEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 146 EGYEAFESRKSILNDALDALSNPNV-DVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 146 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
....+++|.+..++.|.+++...++ ..+.++|+.|+||||+|+.+.+...
T Consensus 13 ~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~Ln 63 (618)
T PRK14951 13 RSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLN 63 (618)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3466788999989999998877666 4558999999999999999966643
No 120
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.35 E-value=0.0018 Score=61.23 Aligned_cols=50 Identities=20% Similarity=0.361 Sum_probs=41.7
Q ss_pred CCcccccchHHHHHHHHHHhCCCCC-cEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 146 EGYEAFESRKSILNDALDALSNPNV-DVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 146 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
....+++|.+..++.|.+++..+++ ..+.++|+.|+||||+|+.+.+...
T Consensus 12 ktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~Ln 62 (702)
T PRK14960 12 RNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLN 62 (702)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3466789999999999999876664 5668999999999999999988754
No 121
>CHL00176 ftsH cell division protein; Validated
Probab=97.35 E-value=0.0011 Score=63.06 Aligned_cols=48 Identities=25% Similarity=0.347 Sum_probs=33.5
Q ss_pred cccccchHHHHHHH---HHHhCCC---------CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 148 YEAFESRKSILNDA---LDALSNP---------NVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 148 ~~~~~gr~~~~~~l---~~~l~~~---------~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
..++.|.+..++.+ +..+... ..+-+.++|++|+|||+||+.+.+...
T Consensus 182 f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~ 241 (638)
T CHL00176 182 FRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAE 241 (638)
T ss_pred HHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 45566766655544 4444321 245689999999999999999988653
No 122
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.35 E-value=0.00029 Score=66.76 Aligned_cols=51 Identities=20% Similarity=0.269 Sum_probs=40.7
Q ss_pred cCCcccccchHHHHHHHHHHhCC-----CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 145 SEGYEAFESRKSILNDALDALSN-----PNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 145 ~~~~~~~~gr~~~~~~l~~~l~~-----~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
|....++.+.+..++.+..|+.. ....++.|+|+.|+||||+++.+.....
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 44466788888888888888753 2345799999999999999999988753
No 123
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.34 E-value=0.0025 Score=52.61 Aligned_cols=26 Identities=31% Similarity=0.566 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
.-.+++|+|++|+|||||++.+..-.
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 29 EGEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45799999999999999999998764
No 124
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.33 E-value=0.0012 Score=52.57 Aligned_cols=87 Identities=22% Similarity=0.253 Sum_probs=50.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEE-----------------EeCCCCCHHHHHHHHHHHhcCCCCC
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFV-----------------EVSRTPDVKRIQGDVADQLSLNICE 231 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv-----------------~v~~~~~~~~~~~~i~~~~~~~~~~ 231 (266)
.-.+++|+|++|+|||||++.+....... ...+++ .+++.+.... ..+.+.+ ...
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~--~tv~~~i---~~~ 98 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDLKPQ---QGEITLDGVPVSDLEKALSSLISVLNQRPYLFD--TTLRNNL---GRR 98 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCCC---CCEEEECCEEHHHHHHHHHhhEEEEccCCeeec--ccHHHhh---ccc
Confidence 56789999999999999999998864321 122222 1122211110 0111111 223
Q ss_pred CCHHH-HHHHHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699 232 GSESE-RAMMLCGQLKKGKKILFVLDNIWTSLDL 264 (266)
Q Consensus 232 ~~~~~-~~~~l~~~L~~~kr~LlvlDDvw~~~~~ 264 (266)
.+..+ ..-.|...+-. +.=+++||++.+..|.
T Consensus 99 LS~G~~qrv~laral~~-~p~~lllDEP~~~LD~ 131 (178)
T cd03247 99 FSGGERQRLALARILLQ-DAPIVLLDEPTVGLDP 131 (178)
T ss_pred CCHHHHHHHHHHHHHhc-CCCEEEEECCcccCCH
Confidence 34333 33345666666 7889999999988764
No 125
>CHL00181 cbbX CbbX; Provisional
Probab=97.33 E-value=0.0019 Score=55.63 Aligned_cols=26 Identities=31% Similarity=0.277 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
...+.++|++|+||||+|+.++....
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~ 84 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILY 84 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 34588999999999999999988654
No 126
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=97.33 E-value=0.003 Score=51.79 Aligned_cols=27 Identities=26% Similarity=0.409 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
..-.+++|+|++|+|||||++.+....
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 23 KPGEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 356799999999999999999997764
No 127
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.32 E-value=0.0017 Score=61.02 Aligned_cols=51 Identities=24% Similarity=0.366 Sum_probs=41.8
Q ss_pred cCCcccccchHHHHHHHHHHhCCCCC-cEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 145 SEGYEAFESRKSILNDALDALSNPNV-DVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 145 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
|....+++|++..++.+.+++...++ .-+.++|+.|+||||+|+.+.....
T Consensus 12 P~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~ 63 (605)
T PRK05896 12 PHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAIN 63 (605)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 33466789999999999998866554 4588999999999999999988754
No 128
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.31 E-value=0.00078 Score=55.94 Aligned_cols=95 Identities=18% Similarity=0.303 Sum_probs=56.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccc------------cC-------CC---eEEEEEeCCCC------------C
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKL------------KV-------CD---EVVFVEVSRTP------------D 213 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~------------~~-------f~---~~~wv~v~~~~------------~ 213 (266)
..-..++|+|++|||||||.+.+..-.+.. +. |+ ---|-+|-++. .
T Consensus 27 ~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e 106 (248)
T COG1116 27 EKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAE 106 (248)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcccchhhHHhhheehhhccccchHh
Confidence 456899999999999999999996543211 11 21 11243333321 1
Q ss_pred HHHHHHHHHHHhcCC-----C-CCCCHHHH-HHHHHHHHhcCCeEEEEEeCCCCCCC
Q 045699 214 VKRIQGDVADQLSLN-----I-CEGSESER-AMMLCGQLKKGKKILFVLDNIWTSLD 263 (266)
Q Consensus 214 ~~~~~~~i~~~~~~~-----~-~~~~~~~~-~~~l~~~L~~~kr~LlvlDDvw~~~~ 263 (266)
..+...+++..++.. + ...|.... ...|.+.|.. ..=+|+||+.....|
T Consensus 107 ~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~-~P~lLLlDEPFgALD 162 (248)
T COG1116 107 ARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALAT-RPKLLLLDEPFGALD 162 (248)
T ss_pred HHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhc-CCCEEEEcCCcchhh
Confidence 234566677777662 1 23443222 2345666666 777889999877654
No 129
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.31 E-value=0.00069 Score=61.60 Aligned_cols=48 Identities=25% Similarity=0.352 Sum_probs=36.5
Q ss_pred cccccchHHHHHHHHHHhC----C---------CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 148 YEAFESRKSILNDALDALS----N---------PNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 148 ~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
+.++.|.+..++.|.+.+. . ....-+.++|++|+|||+||+.+.+...
T Consensus 182 ~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~ 242 (438)
T PTZ00361 182 YADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETS 242 (438)
T ss_pred HHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 4567788888777766542 1 2345688999999999999999999754
No 130
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.30 E-value=0.002 Score=50.95 Aligned_cols=24 Identities=46% Similarity=0.502 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 172 VIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 172 vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
++.++|++|+||||++..+.....
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~ 25 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLK 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999988764
No 131
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=97.30 E-value=0.0015 Score=59.04 Aligned_cols=88 Identities=19% Similarity=0.291 Sum_probs=57.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCC-HHHHHHHHHHHhcC-------CCCCCC-HH----
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPD-VKRIQGDVADQLSL-------NICEGS-ES---- 235 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~-~~~~~~~i~~~~~~-------~~~~~~-~~---- 235 (266)
.-..++|+|..|+|||||++.+.+.. ..+..+.+-+++... ..++..+++..-+. ...+.+ ..
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGT----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKG 236 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCC----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHH
Confidence 56789999999999999999998643 235677777776554 34566655544222 111222 11
Q ss_pred -HHHHHHHHHHhc-CCeEEEEEeCCCC
Q 045699 236 -ERAMMLCGQLKK-GKKILFVLDNIWT 260 (266)
Q Consensus 236 -~~~~~l~~~L~~-~kr~LlvlDDvw~ 260 (266)
..+..+.+++++ |++.||++||+..
T Consensus 237 ~~~A~tiAEyfrd~G~~VLl~~DslTR 263 (444)
T PRK08972 237 CETATTIAEYFRDQGLNVLLLMDSLTR 263 (444)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcChHH
Confidence 223346677754 6999999999864
No 132
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=97.30 E-value=0.0023 Score=58.05 Aligned_cols=90 Identities=17% Similarity=0.247 Sum_probs=58.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCC-HHHHHHHHHHHhcC-------CCCCCC-HH---
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPD-VKRIQGDVADQLSL-------NICEGS-ES--- 235 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~-~~~~~~~i~~~~~~-------~~~~~~-~~--- 235 (266)
.+-..++|+|..|+|||||++.+.+... .+..+++-+..... ..++..+.+..-+. ...+.+ ..
T Consensus 156 ~~Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~ 231 (442)
T PRK08927 156 CRGQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQ 231 (442)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHH
Confidence 3568899999999999999999998653 24566677766543 33555445443222 111222 11
Q ss_pred --HHHHHHHHHHhc-CCeEEEEEeCCCCC
Q 045699 236 --ERAMMLCGQLKK-GKKILFVLDNIWTS 261 (266)
Q Consensus 236 --~~~~~l~~~L~~-~kr~LlvlDDvw~~ 261 (266)
..+..+.+++++ |+..||++||+...
T Consensus 232 a~~~a~tiAEyfrd~G~~Vll~~DslTr~ 260 (442)
T PRK08927 232 AAYLTLAIAEYFRDQGKDVLCLMDSVTRF 260 (442)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeCcHHH
Confidence 223446777744 69999999998653
No 133
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.29 E-value=0.0019 Score=56.37 Aligned_cols=76 Identities=17% Similarity=0.243 Sum_probs=54.2
Q ss_pred ccccchHHHHHHHHHHhCCCCC-cEEEEEcCCCCcHHHHHHHHHHHhc----cccCCCeEEEEE-eCCCCCHHHHHHHHH
Q 045699 149 EAFESRKSILNDALDALSNPNV-DVIGLCGVGGIGKTTLAKIVCDQAK----KLKVCDEVVFVE-VSRTPDVKRIQGDVA 222 (266)
Q Consensus 149 ~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~----~~~~f~~~~wv~-v~~~~~~~~~~~~i~ 222 (266)
.+++|.+..++.+.+++..+++ ....++|+.|+||||+|+.++...- ...|+|...|.. -+......+ .+++.
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~~ 82 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNII 82 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHHH
Confidence 4577888888999998876555 4668999999999999999998642 234677766765 344445555 44555
Q ss_pred HHh
Q 045699 223 DQL 225 (266)
Q Consensus 223 ~~~ 225 (266)
+.+
T Consensus 83 ~~~ 85 (313)
T PRK05564 83 EEV 85 (313)
T ss_pred HHH
Confidence 544
No 134
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.29 E-value=0.0027 Score=56.67 Aligned_cols=49 Identities=29% Similarity=0.555 Sum_probs=41.1
Q ss_pred CcccccchHHHHHHHHHHhCCCCC-cEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 147 GYEAFESRKSILNDALDALSNPNV-DVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 147 ~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
...+++|.+..++.+.+.+...+. ..+-++|+.|+||||+|+.+.+...
T Consensus 15 ~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~ 64 (367)
T PRK14970 15 TFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKIN 64 (367)
T ss_pred cHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 466788999999999999876555 4788999999999999999977653
No 135
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.28 E-value=0.0015 Score=51.87 Aligned_cols=28 Identities=25% Similarity=0.469 Sum_probs=24.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
..-.+++|+|++|+|||||.+.+....+
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (173)
T cd03246 26 EPGESLAIIGPSGSGKSTLARLILGLLR 53 (173)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 3467999999999999999999988643
No 136
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.28 E-value=0.0019 Score=51.29 Aligned_cols=27 Identities=41% Similarity=0.572 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
..-.+++|+|++|+|||||++.+....
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 24 EKGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 346799999999999999999998864
No 137
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=97.28 E-value=0.0031 Score=53.37 Aligned_cols=26 Identities=27% Similarity=0.450 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
.-.+++|+|++|+|||||++.+....
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 26 SGELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 46799999999999999999998764
No 138
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.28 E-value=0.0026 Score=52.97 Aligned_cols=54 Identities=15% Similarity=0.111 Sum_probs=34.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcC
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSL 227 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~ 227 (266)
...++.|.|.+|+|||||+..+...... .. ..++|++. ..++.++++.+ .+++.
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~-~g-~~~~yi~~--e~~~~~~~~~~-~~~g~ 76 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQ-NG-YSVSYVST--QLTTTEFIKQM-MSLGY 76 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh-CC-CcEEEEeC--CCCHHHHHHHH-HHhCC
Confidence 4569999999999999997555443321 12 34566663 33556666665 34443
No 139
>PRK06526 transposase; Provisional
Probab=97.27 E-value=0.00036 Score=59.02 Aligned_cols=27 Identities=30% Similarity=0.219 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
....+.++|++|+|||+||..+.+...
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~ 123 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRAC 123 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHH
Confidence 356789999999999999999988764
No 140
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=97.26 E-value=0.0031 Score=53.41 Aligned_cols=91 Identities=23% Similarity=0.270 Sum_probs=59.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhcccc----CCCeEEEEEeCCCCCHHHHHHHHHHHhcCCC----------CCCCH
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLK----VCDEVVFVEVSRTPDVKRIQGDVADQLSLNI----------CEGSE 234 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~----~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~----------~~~~~ 234 (266)
...+.=|+|.+|+|||.|+-.+.-...... .-..++|+.....|+..++. +|+++.+.+. ...+.
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~ 115 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDL 115 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSH
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCH
Confidence 457999999999999999988865543221 22468999999999988865 6777655421 11233
Q ss_pred HHH---HHHHHHHHhcCCeEEEEEeCCCC
Q 045699 235 SER---AMMLCGQLKKGKKILFVLDNIWT 260 (266)
Q Consensus 235 ~~~---~~~l~~~L~~~kr~LlvlDDvw~ 260 (266)
.++ ...+...+.+.+==|||+|-+..
T Consensus 116 ~~l~~~L~~l~~~l~~~~ikLIVIDSIaa 144 (256)
T PF08423_consen 116 EELLELLEQLPKLLSESKIKLIVIDSIAA 144 (256)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETSSH
T ss_pred HHHHHHHHHHHhhccccceEEEEecchHH
Confidence 333 33344445443667999998754
No 141
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.26 E-value=0.0019 Score=57.04 Aligned_cols=29 Identities=21% Similarity=0.292 Sum_probs=25.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhcc
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKK 196 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 196 (266)
.....++|||+.|+|||.+|+.+++....
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~ 174 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGI 174 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCC
Confidence 45689999999999999999999998763
No 142
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=97.26 E-value=0.00081 Score=61.07 Aligned_cols=93 Identities=23% Similarity=0.205 Sum_probs=57.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCe-----EEEEEeCCC---------------------CCHHHHHHHHH
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDE-----VVFVEVSRT---------------------PDVKRIQGDVA 222 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~-----~~wv~v~~~---------------------~~~~~~~~~i~ 222 (266)
..+.-|+||.+|+|||||.+++.+.. + ..|.. ..++...+. .+..+|...|+
T Consensus 105 ~GrRYGLvGrNG~GKsTLLRaia~~~-v-~~f~veqE~~g~~t~~~~~~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L 182 (582)
T KOG0062|consen 105 RGRRYGLVGRNGIGKSTLLRAIANGQ-V-SGFHVEQEVRGDDTEALQSVLESDTERLDFLAEEKELLAGLTLEEIYDKIL 182 (582)
T ss_pred cccccceeCCCCCcHHHHHHHHHhcC-c-CccCchhheeccchHHHhhhhhccHHHHHHHHhhhhhhccchHHHHHHHHH
Confidence 45788999999999999999999831 1 12211 112211110 02234444455
Q ss_pred HHhcCC-------CCCCC-HHHHHHHHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699 223 DQLSLN-------ICEGS-ESERAMMLCGQLKKGKKILFVLDNIWTSLDL 264 (266)
Q Consensus 223 ~~~~~~-------~~~~~-~~~~~~~l~~~L~~~kr~LlvlDDvw~~~~~ 264 (266)
..+|-. ..+.| ...+.-.|.+.+-. +.=||+||+..|.+|.
T Consensus 183 ~glGFt~emq~~pt~slSGGWrMrlaLARAlf~-~pDlLLLDEPTNhLDv 231 (582)
T KOG0062|consen 183 AGLGFTPEMQLQPTKSLSGGWRMRLALARALFA-KPDLLLLDEPTNHLDV 231 (582)
T ss_pred HhCCCCHHHHhccccccCcchhhHHHHHHHHhc-CCCEEeecCCcccchh
Confidence 566552 22333 34555667777776 8999999999999874
No 143
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.26 E-value=0.0012 Score=59.76 Aligned_cols=75 Identities=20% Similarity=0.272 Sum_probs=43.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCC
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNICEGSESERAMMLCGQLKKGK 249 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~L~~~k 249 (266)
...+.|+|+.|+|||+|++.+++....+..--.++|++ ..++...+...+... .. ..+.+.+++
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~------~~~~~~~~~~~~~~~----~~----~~~~~~~~~-- 199 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS------SEKFTNDFVNALRNN----KM----EEFKEKYRS-- 199 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE------HHHHHHHHHHHHHcC----CH----HHHHHHHHh--
Confidence 45789999999999999999999875321112345554 334444555444321 11 123333432
Q ss_pred eEEEEEeCCCC
Q 045699 250 KILFVLDNIWT 260 (266)
Q Consensus 250 r~LlvlDDvw~ 260 (266)
.-+|+|||+..
T Consensus 200 ~dlLiiDDi~~ 210 (405)
T TIGR00362 200 VDLLLIDDIQF 210 (405)
T ss_pred CCEEEEehhhh
Confidence 23677787754
No 144
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=97.26 E-value=0.0041 Score=52.69 Aligned_cols=27 Identities=26% Similarity=0.542 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
..-.+++|+|++|+|||||++.+..-.
T Consensus 36 ~~Ge~~~I~G~NGsGKSTLlk~l~Gl~ 62 (257)
T PRK11247 36 PAGQFVAVVGRSGCGKSTLLRLLAGLE 62 (257)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 356799999999999999999998764
No 145
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.00072 Score=63.66 Aligned_cols=47 Identities=21% Similarity=0.323 Sum_probs=39.6
Q ss_pred ccccchHHHHHHHHHHhC------CCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 149 EAFESRKSILNDALDALS------NPNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 149 ~~~~gr~~~~~~l~~~l~------~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
.+-.|.++.+++|++.|. .-+..++++||++|+|||+|++.|.....
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~ 375 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALG 375 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhC
Confidence 345688899999999884 23458999999999999999999999876
No 146
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.25 E-value=0.0023 Score=55.83 Aligned_cols=93 Identities=17% Similarity=0.262 Sum_probs=60.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccc----cCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCC----------CCC
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKL----KVCDEVVFVEVSRTPDVKRIQGDVADQLSLNIC----------EGS 233 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~----~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~----------~~~ 233 (266)
....++-|+|+.|+|||+|+..+.-..... ..-..++|+....+|++.++. +++++++.+.+ ..+
T Consensus 94 ~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~d~~~~l~~i~~~~~~~ 172 (313)
T TIGR02238 94 ESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGVDPDAVLDNILYARAYT 172 (313)
T ss_pred cCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCCChHHhcCcEEEecCCC
Confidence 356899999999999999998875432211 112478999999999998865 56777765321 112
Q ss_pred HHHHH---HHHHHHHhcCCeEEEEEeCCCCC
Q 045699 234 ESERA---MMLCGQLKKGKKILFVLDNIWTS 261 (266)
Q Consensus 234 ~~~~~---~~l~~~L~~~kr~LlvlDDvw~~ 261 (266)
.+++. ..+...+..++-=|||+|-+...
T Consensus 173 ~e~~~~~l~~l~~~i~~~~~~LvVIDSisal 203 (313)
T TIGR02238 173 SEHQMELLDYLAAKFSEEPFRLLIVDSIMAL 203 (313)
T ss_pred HHHHHHHHHHHHHHhhccCCCEEEEEcchHh
Confidence 33333 33444444435558999988654
No 147
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.25 E-value=0.0013 Score=54.58 Aligned_cols=40 Identities=15% Similarity=0.210 Sum_probs=29.4
Q ss_pred HHHHHHHHHhC-CCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 156 SILNDALDALS-NPNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 156 ~~~~~l~~~l~-~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
..+..+.++.. ......+.|+|..|+|||+||+.+++...
T Consensus 27 ~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~ 67 (227)
T PRK08903 27 ELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADAS 67 (227)
T ss_pred HHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 33444444443 23457889999999999999999999753
No 148
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=97.24 E-value=0.0029 Score=52.03 Aligned_cols=26 Identities=35% Similarity=0.495 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
.-.+++|+|.+|+|||||++.+..-.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 30 PGEVTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 46789999999999999999998764
No 149
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.24 E-value=0.0038 Score=52.21 Aligned_cols=87 Identities=17% Similarity=0.254 Sum_probs=55.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHH-hccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCC-----------------
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQ-AKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNI----------------- 229 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~-~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~----------------- 229 (266)
+...++.|.|.+|+|||+||..+... .+ .-+.++|++... ++.++.+.+. +++.+.
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~~~~---~ge~~lyvs~ee--~~~~i~~~~~-~~g~~~~~~~~~g~l~~~d~~~~ 92 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWNGLQ---MGEPGIYVALEE--HPVQVRRNMA-QFGWDVRKYEEEGKFAIVDAFTG 92 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHHH---cCCcEEEEEeeC--CHHHHHHHHH-HhCCCHHHHhhcCCEEEEecccc
Confidence 35689999999999999999886443 32 346788888765 4455555432 332210
Q ss_pred --------------CCCCHHHHHHHHHHHHhcCCeEEEEEeCCCC
Q 045699 230 --------------CEGSESERAMMLCGQLKKGKKILFVLDNIWT 260 (266)
Q Consensus 230 --------------~~~~~~~~~~~l~~~L~~~kr~LlvlDDvw~ 260 (266)
+..+..++...+.+.++..+.=+||+|.+..
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSls~ 137 (237)
T TIGR03877 93 GIGEAAEREKYVVKDPTDVRELIDVLRQAIRDINAKRVVIDSVTT 137 (237)
T ss_pred ccccccccccccccCcccHHHHHHHHHHHHHHhCCCEEEEcChhH
Confidence 1124456666666666543444688998754
No 150
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=97.24 E-value=0.0023 Score=55.95 Aligned_cols=93 Identities=13% Similarity=0.148 Sum_probs=58.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhcc---cc-CCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCC----------CCC
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKK---LK-VCDEVVFVEVSRTPDVKRIQGDVADQLSLNIC----------EGS 233 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~---~~-~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~----------~~~ 233 (266)
....++-|+|.+|+|||||+..+...... .. .-..++|+.....+++.++ ..+++.++.... ..+
T Consensus 94 ~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~~~~~~l~~i~~~~~~~ 172 (316)
T TIGR02239 94 ETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGLNPEDVLDNVAYARAYN 172 (316)
T ss_pred CCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCCChHHhhccEEEEecCC
Confidence 35789999999999999999988754221 11 1236799998888888774 456666554211 112
Q ss_pred HHHHH---HHHHHHHhcCCeEEEEEeCCCCC
Q 045699 234 ESERA---MMLCGQLKKGKKILFVLDNIWTS 261 (266)
Q Consensus 234 ~~~~~---~~l~~~L~~~kr~LlvlDDvw~~ 261 (266)
.+++. ..+...+...+--|||+|-+-..
T Consensus 173 ~~~~~~~l~~~~~~~~~~~~~LvVIDSI~al 203 (316)
T TIGR02239 173 TDHQLQLLQQAAAMMSESRFALLIVDSATAL 203 (316)
T ss_pred hHHHHHHHHHHHHhhccCCccEEEEECcHHH
Confidence 23332 33333344435668999987653
No 151
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=97.24 E-value=0.0018 Score=58.72 Aligned_cols=89 Identities=18% Similarity=0.272 Sum_probs=52.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhc-----C--CCCCCCH-----HH
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLS-----L--NICEGSE-----SE 236 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~-----~--~~~~~~~-----~~ 236 (266)
.-..++|+|..|+|||||++.+....+ ....+++..-...-+..++....+.... . ..+.... ..
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~~---pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~ 240 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARADA---FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPL 240 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC---CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHH
Confidence 457899999999999999998876432 2223333332233445544444443321 1 1112111 12
Q ss_pred HHHHHHHHHhc-CCeEEEEEeCCCC
Q 045699 237 RAMMLCGQLKK-GKKILFVLDNIWT 260 (266)
Q Consensus 237 ~~~~l~~~L~~-~kr~LlvlDDvw~ 260 (266)
....+.+++++ |+..||++||+..
T Consensus 241 ~a~~iAEyfrd~G~~Vll~~DslTr 265 (450)
T PRK06002 241 TATAIAEYFRDRGENVLLIVDSVTR 265 (450)
T ss_pred HHHHHHHHHHHcCCCEEEeccchHH
Confidence 23445666654 6999999999864
No 152
>PRK06921 hypothetical protein; Provisional
Probab=97.24 E-value=0.0025 Score=54.28 Aligned_cols=39 Identities=26% Similarity=0.339 Sum_probs=29.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEe
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEV 208 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v 208 (266)
....+.++|..|+|||+||..+.+....+. -..++|++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~-g~~v~y~~~ 154 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKK-GVPVLYFPF 154 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhc-CceEEEEEH
Confidence 467899999999999999999999865321 234556553
No 153
>PRK14974 cell division protein FtsY; Provisional
Probab=97.23 E-value=0.0065 Score=53.44 Aligned_cols=56 Identities=29% Similarity=0.233 Sum_probs=34.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCC--HHHHHHHHHHHhcC
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPD--VKRIQGDVADQLSL 227 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~--~~~~~~~i~~~~~~ 227 (266)
+..+|.++|++|+||||++..+....... .+ .++.++ ...+. ..+-++..+..++.
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~-g~-~V~li~-~Dt~R~~a~eqL~~~a~~lgv 196 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN-GF-SVVIAA-GDTFRAGAIEQLEEHAERLGV 196 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc-CC-eEEEec-CCcCcHHHHHHHHHHHHHcCC
Confidence 46899999999999999888887765422 23 233333 22222 22334455556654
No 154
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.23 E-value=0.0027 Score=54.64 Aligned_cols=25 Identities=28% Similarity=0.298 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 171 DVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 171 ~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
..+.++|++|+||||+|+.+.....
T Consensus 59 ~~vll~G~pGTGKT~lA~~ia~~l~ 83 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRMAQILH 83 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3688999999999999988877654
No 155
>PTZ00185 ATPase alpha subunit; Provisional
Probab=97.23 E-value=0.0034 Score=57.64 Aligned_cols=94 Identities=14% Similarity=0.134 Sum_probs=59.7
Q ss_pred CCCcEEEEEcCCCCcHHHHH-HHHHHHhccc-----cCCCeEEEEEeCCCCCHHHHHHHHHHHhcC-C--------CCCC
Q 045699 168 PNVDVIGLCGVGGIGKTTLA-KIVCDQAKKL-----KVCDEVVFVEVSRTPDVKRIQGDVADQLSL-N--------ICEG 232 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa-~~v~~~~~~~-----~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~-~--------~~~~ 232 (266)
.+-..++|+|..|+|||+|| -.+.|+..+. ++-+.++++.+++..+...-+.+.+..-+. + .++.
T Consensus 187 GRGQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep 266 (574)
T PTZ00185 187 GRGQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEP 266 (574)
T ss_pred cCCCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCC
Confidence 35678999999999999996 6777765321 244678999999876544334444444441 1 1111
Q ss_pred CHHH-----HHHHHHHHHhc-CCeEEEEEeCCCCC
Q 045699 233 SESE-----RAMMLCGQLKK-GKKILFVLDNIWTS 261 (266)
Q Consensus 233 ~~~~-----~~~~l~~~L~~-~kr~LlvlDDvw~~ 261 (266)
.... ....+.+++.+ |+..|||+||+.+.
T Consensus 267 ~~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr~ 301 (574)
T PTZ00185 267 AGLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSKQ 301 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCchHH
Confidence 1111 23345666643 69999999998753
No 156
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.23 E-value=0.00032 Score=57.43 Aligned_cols=28 Identities=39% Similarity=0.591 Sum_probs=24.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
+...+|+|+|++|+|||||++.+.....
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3567999999999999999999998754
No 157
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.23 E-value=0.0025 Score=52.68 Aligned_cols=24 Identities=29% Similarity=0.556 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 172 VIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 172 vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
+|+|.|.+|+||||||+.+.....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999998764
No 158
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=97.23 E-value=0.0036 Score=54.73 Aligned_cols=93 Identities=17% Similarity=0.182 Sum_probs=59.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccccC----CCeEEEEEeCCCCCHHHHHHHHHHHhcCCCC----------CCC
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKV----CDEVVFVEVSRTPDVKRIQGDVADQLSLNIC----------EGS 233 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~----f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~----------~~~ 233 (266)
+...++-|+|++|+|||+|+..+.-....... =..++|+.....+++.++. +++++++.+.+ ..+
T Consensus 100 ~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~-~~~~~~g~~~~~~l~~i~~~~~~~ 178 (317)
T PRK04301 100 ETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIE-QMAEALGLDPDEVLDNIHVARAYN 178 (317)
T ss_pred cCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHH-HHHHHcCCChHhhhccEEEEeCCC
Confidence 35789999999999999999999765432111 1478999999988888765 45555554211 111
Q ss_pred H---HHHHHHHHHHHhc-CCeEEEEEeCCCCC
Q 045699 234 E---SERAMMLCGQLKK-GKKILFVLDNIWTS 261 (266)
Q Consensus 234 ~---~~~~~~l~~~L~~-~kr~LlvlDDvw~~ 261 (266)
. ..+...+...+.. .+--|||+|-+...
T Consensus 179 ~~~~~~~~~~l~~~i~~~~~~~lvVIDSisa~ 210 (317)
T PRK04301 179 SDHQMLLAEKAEELIKEGENIKLVIVDSLTAH 210 (317)
T ss_pred HHHHHHHHHHHHHHHhccCceeEEEEECchHH
Confidence 1 1223444555543 24459999987653
No 159
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.22 E-value=0.0033 Score=59.90 Aligned_cols=50 Identities=22% Similarity=0.431 Sum_probs=41.8
Q ss_pred CCcccccchHHHHHHHHHHhCCCCCc-EEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 146 EGYEAFESRKSILNDALDALSNPNVD-VIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 146 ~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
....+++|.+..++.|.+++...++. -+.++|+.|+||||+|+.+.....
T Consensus 13 ~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~Ln 63 (709)
T PRK08691 13 KTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLN 63 (709)
T ss_pred CCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhc
Confidence 34667899999999999998776654 579999999999999999987643
No 160
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.22 E-value=0.0019 Score=59.60 Aligned_cols=27 Identities=33% Similarity=0.380 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
...+|+|+|++|+||||++..+.....
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la 375 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFA 375 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 468999999999999999988877543
No 161
>PRK13409 putative ATPase RIL; Provisional
Probab=97.22 E-value=0.0027 Score=60.24 Aligned_cols=95 Identities=27% Similarity=0.366 Sum_probs=57.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhcccc---CCCeEEEEEeCCCC------CHHH-------------HHHHHHHHhc
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLK---VCDEVVFVEVSRTP------DVKR-------------IQGDVADQLS 226 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~f~~~~wv~v~~~~------~~~~-------------~~~~i~~~~~ 226 (266)
.-.+++|+|++|+|||||++.+....+... .++..+ ..++|.. +..+ ...++++.++
T Consensus 364 ~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i-~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~ 442 (590)
T PRK13409 364 EGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKI-SYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQ 442 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeE-EEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCC
Confidence 457999999999999999999987643211 111110 1223321 1221 2233444544
Q ss_pred C------CCCCCCHHHHH-HHHHHHHhcCCeEEEEEeCCCCCCCCC
Q 045699 227 L------NICEGSESERA-MMLCGQLKKGKKILFVLDNIWTSLDLE 265 (266)
Q Consensus 227 ~------~~~~~~~~~~~-~~l~~~L~~~kr~LlvlDDvw~~~~~~ 265 (266)
. .....|..+.+ -.|...|.. +.-+++||+..+.+|.+
T Consensus 443 l~~~~~~~~~~LSGGe~QRvaiAraL~~-~p~llLLDEPt~~LD~~ 487 (590)
T PRK13409 443 LERLLDKNVKDLSGGELQRVAIAACLSR-DADLYLLDEPSAHLDVE 487 (590)
T ss_pred CHHHHhCCcccCCHHHHHHHHHHHHHhc-CCCEEEEeCCccCCCHH
Confidence 4 22345654444 346667777 88899999999988753
No 162
>PRK08149 ATP synthase SpaL; Validated
Probab=97.22 E-value=0.0024 Score=57.76 Aligned_cols=90 Identities=16% Similarity=0.232 Sum_probs=56.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCC-CCHHHHHHHHHHHhcC--------CCCCCCH----
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRT-PDVKRIQGDVADQLSL--------NICEGSE---- 234 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~-~~~~~~~~~i~~~~~~--------~~~~~~~---- 234 (266)
.+-..++|+|..|+|||||++.+.+... -+..+...+... .+..++..+.+..... ..+....
T Consensus 149 ~~Gq~i~I~G~sG~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~ 224 (428)
T PRK08149 149 GVGQRMGIFASAGCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCN 224 (428)
T ss_pred ecCCEEEEECCCCCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHh
Confidence 3567899999999999999999987532 244444555543 3455666666654322 1111111
Q ss_pred -HHHHHHHHHHHhc-CCeEEEEEeCCCCC
Q 045699 235 -SERAMMLCGQLKK-GKKILFVLDNIWTS 261 (266)
Q Consensus 235 -~~~~~~l~~~L~~-~kr~LlvlDDvw~~ 261 (266)
...+..+.+++++ ||+.||++||+...
T Consensus 225 a~~~a~tiAE~fr~~G~~Vll~~DslTr~ 253 (428)
T PRK08149 225 AALVATTVAEYFRDQGKRVVLFIDSMTRY 253 (428)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEccchHHH
Confidence 1234456667644 69999999998653
No 163
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=97.22 E-value=0.0042 Score=52.81 Aligned_cols=94 Identities=19% Similarity=0.201 Sum_probs=61.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhcc--ccCCCeEEEEEeCCCCC-HHHHHHHHHHHhcCC--------CCCCCHH-
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKK--LKVCDEVVFVEVSRTPD-VKRIQGDVADQLSLN--------ICEGSES- 235 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~--~~~f~~~~wv~v~~~~~-~~~~~~~i~~~~~~~--------~~~~~~~- 235 (266)
.+-..++|+|-.|+|||+|+..+.++... +.+-+.++++-+.+... ..++..++...-... .+.....
T Consensus 67 g~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r 146 (276)
T cd01135 67 VRGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIER 146 (276)
T ss_pred ccCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHH
Confidence 35678999999999999999998877531 22357889999987653 445555555432211 1111111
Q ss_pred ----HHHHHHHHHHhc--CCeEEEEEeCCCCC
Q 045699 236 ----ERAMMLCGQLKK--GKKILFVLDNIWTS 261 (266)
Q Consensus 236 ----~~~~~l~~~L~~--~kr~LlvlDDvw~~ 261 (266)
.....+.+++++ |++.|+++||+...
T Consensus 147 ~~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr~ 178 (276)
T cd01135 147 IITPRMALTTAEYLAYEKGKHVLVILTDMTNY 178 (276)
T ss_pred HHHHHHHHHHHHHHHhccCCeEEEEEcChhHH
Confidence 123456777764 48999999998653
No 164
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=97.22 E-value=0.0022 Score=60.08 Aligned_cols=27 Identities=26% Similarity=0.441 Sum_probs=23.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
+....++|+|+.|+|||||++.+..-.
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl~lL~g~~ 385 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLLMLLTGLL 385 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999999997654
No 165
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=97.21 E-value=0.0039 Score=54.10 Aligned_cols=27 Identities=30% Similarity=0.474 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
..-.+++|+|++|+|||||.+.+..-.
T Consensus 17 ~~Ge~~~l~G~NGaGKSTLl~~l~Gl~ 43 (302)
T TIGR01188 17 REGEVFGFLGPNGAGKTTTIRMLTTLL 43 (302)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 346799999999999999999998764
No 166
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.21 E-value=0.0038 Score=51.14 Aligned_cols=26 Identities=27% Similarity=0.441 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
.-.+++|+|++|+|||||++.+....
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 25 DGEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 46789999999999999999998764
No 167
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=97.21 E-value=0.0026 Score=58.13 Aligned_cols=92 Identities=20% Similarity=0.283 Sum_probs=61.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCC-CHHHHHHHHHHHhcC-------CCCCCC-H----
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTP-DVKRIQGDVADQLSL-------NICEGS-E---- 234 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~i~~~~~~-------~~~~~~-~---- 234 (266)
.+-..++|+|..|+|||||+..+....... +-+.++++-+.... ...++..++...-.. ...+.+ .
T Consensus 141 gkGQR~gIfa~~G~GKt~Ll~~~~~~~~~~-~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~ 219 (461)
T PRK12597 141 AKGGKTGLFGGAGVGKTVLMMELIFNISKQ-HSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMR 219 (461)
T ss_pred ccCCEEEeecCCCCChhHHHHHHHHHHHhh-CCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHH
Confidence 356899999999999999999988876533 56888888887554 344566666543222 111222 1
Q ss_pred -HHHHHHHHHHHhc--CCeEEEEEeCCCC
Q 045699 235 -SERAMMLCGQLKK--GKKILFVLDNIWT 260 (266)
Q Consensus 235 -~~~~~~l~~~L~~--~kr~LlvlDDvw~ 260 (266)
...+..+.+++++ |++.||++|++..
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLl~~DslTR 248 (461)
T PRK12597 220 VVLTGLTIAEYLRDEEKEDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEeccchH
Confidence 1234456777753 5999999999864
No 168
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.20 E-value=0.00035 Score=56.58 Aligned_cols=24 Identities=46% Similarity=0.693 Sum_probs=22.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 172 VIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 172 vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
||+|.|++|+||||+|+.+.....
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 699999999999999999999876
No 169
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=97.20 E-value=0.0028 Score=55.81 Aligned_cols=92 Identities=16% Similarity=0.227 Sum_probs=60.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhcc---cc-CCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCC----------CCCH
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAKK---LK-VCDEVVFVEVSRTPDVKRIQGDVADQLSLNIC----------EGSE 234 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~---~~-~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~----------~~~~ 234 (266)
...+.-|+|..|+|||+|+..+.-.... .. .-..++|+....+|++.++. +++++++.+.+ ..+.
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~-~ia~~~g~d~~~~l~~I~~~~~~~~ 203 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIV-PIAERFGMDADAVLDNIIYARAYTY 203 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHH-HHHHHcCCChhhhcCeEEEecCCCH
Confidence 4678889999999999999988543221 11 12578999999999999865 56777766321 1233
Q ss_pred HHHH---HHHHHHHhcCCeEEEEEeCCCCC
Q 045699 235 SERA---MMLCGQLKKGKKILFVLDNIWTS 261 (266)
Q Consensus 235 ~~~~---~~l~~~L~~~kr~LlvlDDvw~~ 261 (266)
+++. ..+...+..++--|||+|-+...
T Consensus 204 e~~~~~l~~l~~~i~~~~~~LvVIDSital 233 (344)
T PLN03187 204 EHQYNLLLGLAAKMAEEPFRLLIVDSVIAL 233 (344)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCcHHh
Confidence 3333 33333444424558999987643
No 170
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.20 E-value=0.0016 Score=55.96 Aligned_cols=28 Identities=25% Similarity=0.319 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
....+|||.|.+|+||||+|+.+..-..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4578999999999999999998866543
No 171
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.20 E-value=0.0031 Score=59.98 Aligned_cols=50 Identities=20% Similarity=0.374 Sum_probs=41.6
Q ss_pred CCcccccchHHHHHHHHHHhCCCCCcE-EEEEcCCCCcHHHHHHHHHHHhc
Q 045699 146 EGYEAFESRKSILNDALDALSNPNVDV-IGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 146 ~~~~~~~gr~~~~~~l~~~l~~~~~~v-i~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
....+++|.+..++.|.+.+..+++.. +.++|+.|+||||+|+.+.+...
T Consensus 13 ~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~ 63 (647)
T PRK07994 13 QTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLN 63 (647)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhh
Confidence 346778999999999998887766655 57899999999999999987754
No 172
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=97.20 E-value=0.0036 Score=52.83 Aligned_cols=94 Identities=20% Similarity=0.252 Sum_probs=54.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhcccc---CCC---eEEEEEeCCCC--------CHH-----------HHHHHHH
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLK---VCD---EVVFVEVSRTP--------DVK-----------RIQGDVA 222 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~f~---~~~wv~v~~~~--------~~~-----------~~~~~i~ 222 (266)
..-.+++|+|++|+|||||++.+........ .++ ...++ .+.+ +.. +-...++
T Consensus 28 ~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v--~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l 105 (251)
T PRK09544 28 KPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYV--PQKLYLDTTLPLTVNRFLRLRPGTKKEDILPAL 105 (251)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEe--ccccccccccChhHHHHHhccccccHHHHHHHH
Confidence 3568999999999999999999987643211 011 12222 2221 111 1123344
Q ss_pred HHhcCC------CCCCCHHHH-HHHHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699 223 DQLSLN------ICEGSESER-AMMLCGQLKKGKKILFVLDNIWTSLDL 264 (266)
Q Consensus 223 ~~~~~~------~~~~~~~~~-~~~l~~~L~~~kr~LlvlDDvw~~~~~ 264 (266)
+.++.. ....|..+. .-.+...|-. +.=+++||++.+..|.
T Consensus 106 ~~~gl~~~~~~~~~~LSgGq~qrv~laral~~-~p~lllLDEPt~~LD~ 153 (251)
T PRK09544 106 KRVQAGHLIDAPMQKLSGGETQRVLLARALLN-RPQLLVLDEPTQGVDV 153 (251)
T ss_pred HHcCChHHHhCChhhCCHHHHHHHHHHHHHhc-CCCEEEEeCCCcCCCH
Confidence 444441 223453333 3345666666 7789999999988775
No 173
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.20 E-value=0.0069 Score=55.17 Aligned_cols=86 Identities=23% Similarity=0.225 Sum_probs=48.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCC-CCCHHHHHHHHHHHhcCCCCC----CCHHHHHHHHHH
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSR-TPDVKRIQGDVADQLSLNICE----GSESERAMMLCG 243 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~l~~ 243 (266)
...+|.++|..|+||||.+..+......+ .+ .+..+++.. .+...+.++.++.+++.+... .+.........+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~-g~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~ 171 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKK-GL-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLE 171 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHc-CC-eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 46799999999999999999998876532 22 333343321 112344566666776654322 122222333333
Q ss_pred HHhcCCeEEEEEeCC
Q 045699 244 QLKKGKKILFVLDNI 258 (266)
Q Consensus 244 ~L~~~kr~LlvlDDv 258 (266)
.+.. . =+||+|..
T Consensus 172 ~~~~-~-DvVIIDTA 184 (437)
T PRK00771 172 KFKK-A-DVIIVDTA 184 (437)
T ss_pred Hhhc-C-CEEEEECC
Confidence 3443 3 45777754
No 174
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.20 E-value=0.00074 Score=56.22 Aligned_cols=37 Identities=22% Similarity=0.355 Sum_probs=28.8
Q ss_pred HHHHHHhCC-CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 159 NDALDALSN-PNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 159 ~~l~~~l~~-~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
+.|..+... ....+++|.|++|+|||||++.+....+
T Consensus 21 ~~~~~~~~~~~~~~iigi~G~~GsGKTTl~~~L~~~l~ 58 (229)
T PRK09270 21 RRLAALQAEPQRRTIVGIAGPPGAGKSTLAEFLEALLQ 58 (229)
T ss_pred HHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 334444333 5678999999999999999999998765
No 175
>PTZ00035 Rad51 protein; Provisional
Probab=97.19 E-value=0.0038 Score=55.05 Aligned_cols=93 Identities=16% Similarity=0.239 Sum_probs=59.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhcc---cc-CCCeEEEEEeCCCCCHHHHHHHHHHHhcCCC----------CCCC
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKK---LK-VCDEVVFVEVSRTPDVKRIQGDVADQLSLNI----------CEGS 233 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~---~~-~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~----------~~~~ 233 (266)
....++.|+|..|+|||||+..+.-.... .. .-..++|+.....+++.++ ..++++++... ...+
T Consensus 116 ~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~~~~~~l~nI~~~~~~~ 194 (337)
T PTZ00035 116 ETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGLDPEDVLDNIAYARAYN 194 (337)
T ss_pred CCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCCChHhHhhceEEEccCC
Confidence 35689999999999999999988654331 11 1235679988888888774 45666665521 1122
Q ss_pred HHHHHHH---HHHHHhcCCeEEEEEeCCCCC
Q 045699 234 ESERAMM---LCGQLKKGKKILFVLDNIWTS 261 (266)
Q Consensus 234 ~~~~~~~---l~~~L~~~kr~LlvlDDvw~~ 261 (266)
.+++... +...+..++--|||+|-+...
T Consensus 195 ~e~~~~~l~~~~~~l~~~~~~lvVIDSital 225 (337)
T PTZ00035 195 HEHQMQLLSQAAAKMAEERFALLIVDSATAL 225 (337)
T ss_pred HHHHHHHHHHHHHHhhccCccEEEEECcHHh
Confidence 3333333 333444435568999988753
No 176
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.19 E-value=0.0033 Score=59.64 Aligned_cols=51 Identities=20% Similarity=0.333 Sum_probs=41.9
Q ss_pred CCcccccchHHHHHHHHHHhCCCCCcE-EEEEcCCCCcHHHHHHHHHHHhcc
Q 045699 146 EGYEAFESRKSILNDALDALSNPNVDV-IGLCGVGGIGKTTLAKIVCDQAKK 196 (266)
Q Consensus 146 ~~~~~~~gr~~~~~~l~~~l~~~~~~v-i~I~G~~G~GKTtLa~~v~~~~~~ 196 (266)
....+++|.+..+..|.+++..+++.. +.++|+.|+||||+|+.+.+....
T Consensus 13 ~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c 64 (620)
T PRK14954 13 SKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (620)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 346678999999999988887766654 889999999999999999877643
No 177
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=97.19 E-value=0.0048 Score=47.58 Aligned_cols=112 Identities=13% Similarity=0.181 Sum_probs=70.5
Q ss_pred cchhhchHHHHHHHHhhhhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHh
Q 045699 2 AHFIFSIPAKVLGQLVGTIPGQLRNYKSNFADLKKKTEKLKLTIEDLQLWVDAAKENGEEIEQSVERWLISANTTVVEAG 81 (266)
Q Consensus 2 ae~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~el~~l~~~l~~i~~~l~~ae~~~~~~~~~~~~Wl~~vr~~a~d~e 81 (266)
||.+++++. +...+.+.+.+....+.....+.-++.|.++++.+.-.+.+.+..+...+..-+.=+.++.+...+++
T Consensus 3 ~eL~~gaal---G~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~ 79 (147)
T PF05659_consen 3 AELVGGAAL---GAVFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGK 79 (147)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHH
Confidence 344554444 33344444445555555555666666666676666666666555444434444667788888888888
Q ss_pred hhHHHHHHhhcccccCCCCChhHHhHHHHHHHHHHHHHHHHh
Q 045699 82 KLIEDEEKEKKKCLKGLCPNLMNRYQLSKKAAWEVKAIAGLL 123 (266)
Q Consensus 82 d~ld~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~l~ 123 (266)
+++.. |....+.++...++.+++|+++.+.+....
T Consensus 80 ~LV~k-------~sk~~r~n~~kk~~y~~Ki~~le~~l~~f~ 114 (147)
T PF05659_consen 80 ELVEK-------CSKVRRWNLYKKPRYARKIEELEESLRRFI 114 (147)
T ss_pred HHHHH-------hccccHHHHHhhHhHHHHHHHHHHHHHHHh
Confidence 88875 333333466777888999999888776554
No 178
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.18 E-value=0.0013 Score=60.17 Aligned_cols=77 Identities=14% Similarity=0.169 Sum_probs=46.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCC
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNICEGSESERAMMLCGQLKKGK 249 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~L~~~k 249 (266)
...+.|+|..|+|||+|++.+.+.......--.+++++ ..++...+...++... .....+.+.++ +
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~~------~~~~~~~~~~~--~ 206 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS------GDEFARKAVDILQKTH------KEIEQFKNEIC--Q 206 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE------HHHHHHHHHHHHHHhh------hHHHHHHHHhc--c
Confidence 45689999999999999999999754222112333433 3456666666654210 11223344444 3
Q ss_pred eEEEEEeCCCC
Q 045699 250 KILFVLDNIWT 260 (266)
Q Consensus 250 r~LlvlDDvw~ 260 (266)
.-+|||||+-.
T Consensus 207 ~dvLiIDDiq~ 217 (450)
T PRK14087 207 NDVLIIDDVQF 217 (450)
T ss_pred CCEEEEecccc
Confidence 44778888853
No 179
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.18 E-value=0.0021 Score=53.13 Aligned_cols=39 Identities=28% Similarity=0.474 Sum_probs=28.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEE
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVE 207 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~ 207 (266)
....+-|+|..|+|||.|.+.+++.......-..++|++
T Consensus 33 ~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~ 71 (219)
T PF00308_consen 33 RYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS 71 (219)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec
Confidence 346789999999999999999999865332222344544
No 180
>PRK09183 transposase/IS protein; Provisional
Probab=97.18 E-value=0.0017 Score=55.10 Aligned_cols=27 Identities=37% Similarity=0.391 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
....+.|+|+.|+|||+||..+.+...
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~ 127 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAV 127 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 346788999999999999999987754
No 181
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.18 E-value=0.00042 Score=56.78 Aligned_cols=27 Identities=33% Similarity=0.549 Sum_probs=24.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
.+..+|+|.|.+|+|||||++.+....
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999999999999875
No 182
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.18 E-value=0.0034 Score=49.65 Aligned_cols=28 Identities=25% Similarity=0.381 Sum_probs=24.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
..-.+++|+|++|+|||||.+.+..-..
T Consensus 26 ~~G~~~~l~G~nGsGKstLl~~i~G~~~ 53 (171)
T cd03228 26 KPGEKVAIVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 3567999999999999999999988653
No 183
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.17 E-value=0.0043 Score=56.33 Aligned_cols=26 Identities=31% Similarity=0.293 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
...++.++|+.|+||||.+..+....
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l 123 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYL 123 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 46799999999999999987776654
No 184
>PTZ00301 uridine kinase; Provisional
Probab=97.17 E-value=0.00072 Score=55.50 Aligned_cols=26 Identities=31% Similarity=0.599 Sum_probs=23.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
..+|+|.|.+|+||||||+.+.+...
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHH
Confidence 57899999999999999999987653
No 185
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=97.16 E-value=0.0046 Score=53.86 Aligned_cols=92 Identities=15% Similarity=0.176 Sum_probs=59.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhcccc----CCCeEEEEEeCCCCCHHHHHHHHHHHhcCCC----------CCCCH
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLK----VCDEVVFVEVSRTPDVKRIQGDVADQLSLNI----------CEGSE 234 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~----~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~----------~~~~~ 234 (266)
...++-|+|.+|+|||||+..+........ .-..++|+.....+++.++. ++++.++.+. ...+.
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~gl~~~~~~~~i~i~~~~~~ 172 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARGLDPDEVLKNIYVARAYNS 172 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcCCCHHHHhhceEEEecCCH
Confidence 468899999999999999999976643211 11378999999988888754 5555554421 01111
Q ss_pred H---HHHHHHHHHHhcCC--eEEEEEeCCCCC
Q 045699 235 S---ERAMMLCGQLKKGK--KILFVLDNIWTS 261 (266)
Q Consensus 235 ~---~~~~~l~~~L~~~k--r~LlvlDDvw~~ 261 (266)
. .+...+.+.+...+ --+||+|-+...
T Consensus 173 ~~~~~lld~l~~~i~~~~~~~~lVVIDSisa~ 204 (310)
T TIGR02236 173 NHQMLLVEKAEDLIKELNNPVKLLIVDSLTSH 204 (310)
T ss_pred HHHHHHHHHHHHHHHhcCCCceEEEEecchHh
Confidence 1 23445566665522 348999987654
No 186
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.16 E-value=0.0032 Score=51.83 Aligned_cols=88 Identities=16% Similarity=0.112 Sum_probs=52.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHH----hcCC---CCCCCHHHH---
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQ----LSLN---ICEGSESER--- 237 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~----~~~~---~~~~~~~~~--- 237 (266)
....++.|.|.+|+|||||+..+..... ..-..++|++....+. +-+++++.. .... ....+..++
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~~~--~~g~~v~yi~~e~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVETA--GQGKKVAYIDTEGLSS--ERFRQIAGDRPERAASSIIVFEPMDFNEQGRA 92 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEECCCCCH--HHHHHHHhHChHhhhcCEEEEeCCCHHHHHHH
Confidence 3468999999999999999999987653 2234677887665553 223344332 1111 112222233
Q ss_pred HHHHHHHHhcCCeEEEEEeCCCC
Q 045699 238 AMMLCGQLKKGKKILFVLDNIWT 260 (266)
Q Consensus 238 ~~~l~~~L~~~kr~LlvlDDvw~ 260 (266)
...+...+.. +.-+||+|-+..
T Consensus 93 ~~~~~~~~~~-~~~lvvIDsi~~ 114 (218)
T cd01394 93 IQETETFADE-KVDLVVVDSATA 114 (218)
T ss_pred HHHHHHHHhc-CCcEEEEechHH
Confidence 2344445554 566899998754
No 187
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=97.15 E-value=0.0031 Score=59.09 Aligned_cols=27 Identities=33% Similarity=0.483 Sum_probs=23.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
..-.+++|+|++|+|||||++.+....
T Consensus 25 ~~Ge~~~liG~NGsGKSTLl~~l~Gl~ 51 (530)
T PRK15064 25 GGGNRYGLIGANGCGKSTFMKILGGDL 51 (530)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356799999999999999999998764
No 188
>PRK06547 hypothetical protein; Provisional
Probab=97.15 E-value=0.00081 Score=53.44 Aligned_cols=33 Identities=27% Similarity=0.311 Sum_probs=27.4
Q ss_pred HHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 163 DALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 163 ~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
..+......+|+|.|+.|+||||+|+.+.....
T Consensus 8 ~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~~ 40 (172)
T PRK06547 8 ARLCGGGMITVLIDGRSGSGKTTLAGALAARTG 40 (172)
T ss_pred HHhhcCCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 334456788999999999999999999988754
No 189
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.15 E-value=0.0022 Score=51.12 Aligned_cols=24 Identities=25% Similarity=0.263 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 172 VIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 172 vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
+|.|+|++|+||||+|+.+.....
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC
Confidence 578999999999999999988653
No 190
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=97.15 E-value=0.0023 Score=57.93 Aligned_cols=89 Identities=17% Similarity=0.315 Sum_probs=55.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCC-CCHHHHHHHHHHHhcC-------CCCCCC-HH---
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRT-PDVKRIQGDVADQLSL-------NICEGS-ES--- 235 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~-~~~~~~~~~i~~~~~~-------~~~~~~-~~--- 235 (266)
..-..++|+|.+|+|||||++.+.+.. +.+..++..+.+. ....+++.+....-.. ...+.+ ..
T Consensus 153 ~~GqrigI~G~sG~GKSTLL~~I~~~~----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~ 228 (433)
T PRK07594 153 GEGQRVGIFSAPGVGKSTLLAMLCNAP----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVR 228 (433)
T ss_pred CCCCEEEEECCCCCCccHHHHHhcCCC----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHH
Confidence 456799999999999999999998754 3455666666654 3344555554321111 111111 11
Q ss_pred --HHHHHHHHHHhc-CCeEEEEEeCCCC
Q 045699 236 --ERAMMLCGQLKK-GKKILFVLDNIWT 260 (266)
Q Consensus 236 --~~~~~l~~~L~~-~kr~LlvlDDvw~ 260 (266)
..+..+.+++++ |++.||++||+..
T Consensus 229 a~~~a~tiAEyfrd~G~~VLl~~Dsltr 256 (433)
T PRK07594 229 ALFVATTIAEFFRDNGKRVVLLADSLTR 256 (433)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeCHHH
Confidence 123446677754 6999999999864
No 191
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=97.15 E-value=0.0043 Score=52.98 Aligned_cols=26 Identities=35% Similarity=0.463 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
.-.+++|+|++|+|||||++.+....
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 57 (272)
T PRK15056 32 GGSIAALVGVNGSGKSTLFKALMGFV 57 (272)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 56799999999999999999997663
No 192
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.15 E-value=0.0037 Score=58.95 Aligned_cols=49 Identities=18% Similarity=0.286 Sum_probs=41.8
Q ss_pred CcccccchHHHHHHHHHHhCCCCCcE-EEEEcCCCCcHHHHHHHHHHHhc
Q 045699 147 GYEAFESRKSILNDALDALSNPNVDV-IGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 147 ~~~~~~gr~~~~~~l~~~l~~~~~~v-i~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
...+++|.+..++.|.+++...++.. +.++|+.|+||||+|+.+.....
T Consensus 11 ~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 60 (584)
T PRK14952 11 TFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLN 60 (584)
T ss_pred cHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 46678999999999999988777665 68999999999999999988754
No 193
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=97.14 E-value=0.002 Score=58.21 Aligned_cols=90 Identities=21% Similarity=0.310 Sum_probs=54.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCC-CCCHHHHHHHHHHHhcCC--------CCCCCHH---
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSR-TPDVKRIQGDVADQLSLN--------ICEGSES--- 235 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~i~~~~~~~--------~~~~~~~--- 235 (266)
..-..++|+|.+|+|||||++.+....+ .+..+.+.+.. .-...++..+.+..-+.. .+.....
T Consensus 138 ~~Gq~i~I~G~sG~GKTtLl~~I~~~~~----~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~ 213 (418)
T TIGR03498 138 CRGQRLGIFAGSGVGKSTLLSMLARNTD----ADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQ 213 (418)
T ss_pred cCCcEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHH
Confidence 3557899999999999999998887643 23333344443 334445555554433221 1111221
Q ss_pred --HHHHHHHHHHhc-CCeEEEEEeCCCCC
Q 045699 236 --ERAMMLCGQLKK-GKKILFVLDNIWTS 261 (266)
Q Consensus 236 --~~~~~l~~~L~~-~kr~LlvlDDvw~~ 261 (266)
..+..+.+++++ |+..||++||+...
T Consensus 214 a~~~a~~iAEyfrd~G~~Vll~~DslTr~ 242 (418)
T TIGR03498 214 AAYTATAIAEYFRDQGKDVLLLMDSVTRF 242 (418)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 123446777754 69999999998653
No 194
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.14 E-value=0.005 Score=54.50 Aligned_cols=49 Identities=22% Similarity=0.392 Sum_probs=40.6
Q ss_pred CcccccchHHHHHHHHHHhCCCCC-cEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 147 GYEAFESRKSILNDALDALSNPNV-DVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 147 ~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
...+++|.+..++.|.+++...+. ..+-++|+.|+||||+|+.+.....
T Consensus 12 ~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~ 61 (355)
T TIGR02397 12 TFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALN 61 (355)
T ss_pred cHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 356789999999999998876554 4678899999999999999987753
No 195
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=97.13 E-value=0.0032 Score=60.36 Aligned_cols=96 Identities=22% Similarity=0.231 Sum_probs=55.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccc-cC--CC-eEEEEEeCCCC--------CHHH------------HHHHHHH
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKL-KV--CD-EVVFVEVSRTP--------DVKR------------IQGDVAD 223 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~-~~--f~-~~~wv~v~~~~--------~~~~------------~~~~i~~ 223 (266)
....+++|+|++|+|||||.+.+....... +. ++ ..-.-.++|.. +... -...++.
T Consensus 336 ~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~ 415 (638)
T PRK10636 336 VPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLG 415 (638)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHH
Confidence 356899999999999999999998864321 11 11 11111223321 1111 1123444
Q ss_pred HhcCC-------CCCCCHHHHH-HHHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699 224 QLSLN-------ICEGSESERA-MMLCGQLKKGKKILFVLDNIWTSLDL 264 (266)
Q Consensus 224 ~~~~~-------~~~~~~~~~~-~~l~~~L~~~kr~LlvlDDvw~~~~~ 264 (266)
.++.. ....|..+.. -.|...+-. +.-+|+||++.+.+|.
T Consensus 416 ~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~-~p~lLlLDEPt~~LD~ 463 (638)
T PRK10636 416 GFGFQGDKVTEETRRFSGGEKARLVLALIVWQ-RPNLLLLDEPTNHLDL 463 (638)
T ss_pred HcCCChhHhcCchhhCCHHHHHHHHHHHHHhc-CCCEEEEcCCCCCCCH
Confidence 44431 1234544433 345666666 8889999999999875
No 196
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.13 E-value=0.0018 Score=50.28 Aligned_cols=44 Identities=25% Similarity=0.339 Sum_probs=34.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCC
Q 045699 172 VIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLN 228 (266)
Q Consensus 172 vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~ 228 (266)
+|.|-|++|+||||+|+.+.+....+ + .+.-.++++|++..|..
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~---------~----vsaG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK---------L----VSAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc---------e----eeccHHHHHHHHHcCCC
Confidence 68999999999999999999986532 1 13456888898888773
No 197
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=97.12 E-value=0.0038 Score=54.57 Aligned_cols=89 Identities=18% Similarity=0.277 Sum_probs=55.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCC-CCCHHHHHHHHHHHhcC-------C-CCCCCHH---
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSR-TPDVKRIQGDVADQLSL-------N-ICEGSES--- 235 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~i~~~~~~-------~-~~~~~~~--- 235 (266)
.....++|+|..|+|||||++.+.+... -++.+...+.. .-+..++....+..-+. . .+.....
T Consensus 67 ~~Gqri~I~G~sG~GKTtLl~~Ia~~~~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~ 142 (326)
T cd01136 67 GKGQRLGIFAGSGVGKSTLLGMIARGTT----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVK 142 (326)
T ss_pred cCCcEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHH
Confidence 3457899999999999999999987643 23445555543 33455555555554322 1 1111111
Q ss_pred --HHHHHHHHHHhc-CCeEEEEEeCCCC
Q 045699 236 --ERAMMLCGQLKK-GKKILFVLDNIWT 260 (266)
Q Consensus 236 --~~~~~l~~~L~~-~kr~LlvlDDvw~ 260 (266)
.....+.+++.+ ||..||++||+..
T Consensus 143 ~~~~a~~~AEyfr~~g~~Vll~~Dsltr 170 (326)
T cd01136 143 AAYTATAIAEYFRDQGKDVLLLMDSLTR 170 (326)
T ss_pred HHHHHHHHHHHHHHcCCCeEEEeccchH
Confidence 223445666643 6999999999764
No 198
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.0015 Score=56.23 Aligned_cols=81 Identities=15% Similarity=0.154 Sum_probs=48.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhccc--cCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhc
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQAKKL--KVCDEVVFVEVSRTPDVKRIQGDVADQLSLNICEGSESERAMMLCGQLKK 247 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~--~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~L~~ 247 (266)
-++|.++||+|.|||+|.+.++....++ +.+.....+.+... .++ .....+ .+.-...+...+.+.+.+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh----sLF----SKWFsE-SgKlV~kmF~kI~ELv~d 247 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH----SLF----SKWFSE-SGKLVAKMFQKIQELVED 247 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh----HHH----HHHHhh-hhhHHHHHHHHHHHHHhC
Confidence 3789999999999999999999997665 23433344443321 111 111110 111245566777777777
Q ss_pred CCeEE--EEEeCCCC
Q 045699 248 GKKIL--FVLDNIWT 260 (266)
Q Consensus 248 ~kr~L--lvlDDvw~ 260 (266)
+.+| +++|+|.+
T Consensus 248 -~~~lVfvLIDEVES 261 (423)
T KOG0744|consen 248 -RGNLVFVLIDEVES 261 (423)
T ss_pred -CCcEEEEEeHHHHH
Confidence 4444 34777753
No 199
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=97.12 E-value=0.0044 Score=53.98 Aligned_cols=86 Identities=20% Similarity=0.263 Sum_probs=56.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCC------CCCHHHHHHHHH
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNIC------EGSESERAMMLC 242 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~------~~~~~~~~~~l~ 242 (266)
..+++-|+|+.|+||||||-.+..... ..-..++|+...+.+++.. +.++|.+.+ ..+.++....+.
T Consensus 52 ~G~ivEi~G~~ssGKttLaL~~ia~~q--~~g~~~a~ID~e~~ld~~~-----a~~lGvdl~rllv~~P~~~E~al~~~e 124 (322)
T PF00154_consen 52 RGRIVEIYGPESSGKTTLALHAIAEAQ--KQGGICAFIDAEHALDPEY-----AESLGVDLDRLLVVQPDTGEQALWIAE 124 (322)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH--HTT-EEEEEESSS---HHH-----HHHTT--GGGEEEEE-SSHHHHHHHHH
T ss_pred cCceEEEeCCCCCchhhhHHHHHHhhh--cccceeEEecCcccchhhH-----HHhcCccccceEEecCCcHHHHHHHHH
Confidence 467999999999999999999988754 3346788999988877653 445555332 234555556666
Q ss_pred HHHhcCCeEEEEEeCCCCC
Q 045699 243 GQLKKGKKILFVLDNIWTS 261 (266)
Q Consensus 243 ~~L~~~kr~LlvlDDvw~~ 261 (266)
..++.+.--++|+|-|-..
T Consensus 125 ~lirsg~~~lVVvDSv~al 143 (322)
T PF00154_consen 125 QLIRSGAVDLVVVDSVAAL 143 (322)
T ss_dssp HHHHTTSESEEEEE-CTT-
T ss_pred HHhhcccccEEEEecCccc
Confidence 7777756678999987543
No 200
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=97.12 E-value=0.0046 Score=56.20 Aligned_cols=92 Identities=16% Similarity=0.273 Sum_probs=61.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCC-HHHHHHHHHHHhcC-------CCCCCC-HH---
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPD-VKRIQGDVADQLSL-------NICEGS-ES--- 235 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~-~~~~~~~i~~~~~~-------~~~~~~-~~--- 235 (266)
..-..++|+|..|+|||+|+..+...... .+-+.++++-+.+... ..++..++...-.. ...+.+ ..
T Consensus 136 gkGQr~~Ifg~~G~GKt~l~~~~~~~~~~-~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~ 214 (449)
T TIGR03305 136 ERGGKAGLFGGAGVGKTVLLTEMIHNMVG-QHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFR 214 (449)
T ss_pred ccCCEEEeecCCCCChhHHHHHHHHHHHh-cCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHH
Confidence 35678999999999999999998776542 3457888998876653 44566665543221 111222 11
Q ss_pred --HHHHHHHHHHhc--CCeEEEEEeCCCC
Q 045699 236 --ERAMMLCGQLKK--GKKILFVLDNIWT 260 (266)
Q Consensus 236 --~~~~~l~~~L~~--~kr~LlvlDDvw~ 260 (266)
..+..+.+++++ |++.||++||+..
T Consensus 215 ~~~~a~tiAEyfrd~~G~~VLl~~DslTR 243 (449)
T TIGR03305 215 VGHTALTMAEYFRDDEKQDVLLLIDNIFR 243 (449)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecChHH
Confidence 234456788875 6999999999865
No 201
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=97.12 E-value=0.0047 Score=53.73 Aligned_cols=27 Identities=30% Similarity=0.474 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
.-.+++|+|++|+|||||.+.+..-.+
T Consensus 32 ~Gei~gllGpNGaGKSTLl~~l~Gl~~ 58 (306)
T PRK13537 32 RGECFGLLGPNGAGKTTTLRMLLGLTH 58 (306)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 457999999999999999999987643
No 202
>PRK13409 putative ATPase RIL; Provisional
Probab=97.11 E-value=0.0031 Score=59.78 Aligned_cols=27 Identities=41% Similarity=0.586 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
..-.+++|+|++|+|||||.+.+....
T Consensus 97 ~~Gev~gLvG~NGaGKSTLlkiL~G~l 123 (590)
T PRK13409 97 KEGKVTGILGPNGIGKTTAVKILSGEL 123 (590)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 346799999999999999999997764
No 203
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=97.11 E-value=0.0051 Score=54.70 Aligned_cols=26 Identities=35% Similarity=0.530 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
.-.+++|+|++|+|||||.+.+..-.
T Consensus 29 ~Ge~~~llG~sGsGKSTLLr~iaGl~ 54 (356)
T PRK11650 29 DGEFIVLVGPSGCGKSTLLRMVAGLE 54 (356)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHCCC
Confidence 45789999999999999999997764
No 204
>PRK10867 signal recognition particle protein; Provisional
Probab=97.11 E-value=0.0053 Score=55.79 Aligned_cols=27 Identities=37% Similarity=0.409 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
...+|.++|++|+||||.+..+.....
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~ 125 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLK 125 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 468999999999999997777765543
No 205
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.11 E-value=0.0061 Score=50.77 Aligned_cols=87 Identities=17% Similarity=0.238 Sum_probs=55.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCC------------------
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNI------------------ 229 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~------------------ 229 (266)
+...++.|.|.+|+|||+|+.++..... ..=..++|++...+ +.++.+.+ .+++...
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~~--~~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGAL--KQGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHHH--hCCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEeccccc
Confidence 3568999999999999999999854432 12357888888754 45555543 3343211
Q ss_pred ---CCCCHHHHHHHHHHHHhcCCeEEEEEeCCC
Q 045699 230 ---CEGSESERAMMLCGQLKKGKKILFVLDNIW 259 (266)
Q Consensus 230 ---~~~~~~~~~~~l~~~L~~~kr~LlvlDDvw 259 (266)
.......+...+...+...+.-++|+|.+.
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 111235566667777764345589999876
No 206
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=97.11 E-value=0.0044 Score=51.01 Aligned_cols=87 Identities=21% Similarity=0.420 Sum_probs=55.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCC-CHHHHHHHHHHHhcC-------CCCCCC-HH----
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTP-DVKRIQGDVADQLSL-------NICEGS-ES---- 235 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~i~~~~~~-------~~~~~~-~~---- 235 (266)
+-..++|+|..|+|||+|++.+.+... -++.+++.+++.. ...++.+++...-.. .....+ ..
T Consensus 14 ~Gqr~~I~g~~g~GKt~Ll~~i~~~~~----~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~ 89 (215)
T PF00006_consen 14 RGQRIGIFGGAGVGKTVLLQEIANNQD----ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRA 89 (215)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHCT----TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHH
T ss_pred cCCEEEEEcCcccccchhhHHHHhccc----ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhh
Confidence 457899999999999999999998864 3455888887653 445555555332111 111122 11
Q ss_pred -HHHHHHHHHHhc-CCeEEEEEeCCC
Q 045699 236 -ERAMMLCGQLKK-GKKILFVLDNIW 259 (266)
Q Consensus 236 -~~~~~l~~~L~~-~kr~LlvlDDvw 259 (266)
.....+.+++++ ||..|+++||+.
T Consensus 90 ~~~a~t~AEyfrd~G~dVlli~Dslt 115 (215)
T PF00006_consen 90 PYTALTIAEYFRDQGKDVLLIIDSLT 115 (215)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEEETHH
T ss_pred hccchhhhHHHhhcCCceeehhhhhH
Confidence 122334555553 599999999974
No 207
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.10 E-value=0.0058 Score=56.34 Aligned_cols=49 Identities=22% Similarity=0.346 Sum_probs=40.4
Q ss_pred CCcccccchHHHHHHHHHHhCCCCCc-EEEEEcCCCCcHHHHHHHHHHHh
Q 045699 146 EGYEAFESRKSILNDALDALSNPNVD-VIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 146 ~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
....+++|.+..++.|.+.+..+++. -+-++|+.|+||||+|+.+....
T Consensus 10 ~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~L 59 (491)
T PRK14964 10 SSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCL 59 (491)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHH
Confidence 34667899999888888888766665 78899999999999999997643
No 208
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.10 E-value=0.0024 Score=62.22 Aligned_cols=48 Identities=29% Similarity=0.334 Sum_probs=36.7
Q ss_pred cccccchHHHHHHHHHHhC----C---------CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 148 YEAFESRKSILNDALDALS----N---------PNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 148 ~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
..++.|.+..++.+.+.+. . ...+-+.++|+.|+||||||+.+.+...
T Consensus 177 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~ 237 (733)
T TIGR01243 177 YEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAG 237 (733)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhC
Confidence 4557888888877766542 1 2345688999999999999999998764
No 209
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.10 E-value=0.0048 Score=55.75 Aligned_cols=25 Identities=32% Similarity=0.429 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
...+++++|++|+||||++..+...
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~ 214 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAAR 214 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999887664
No 210
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=97.10 E-value=0.0043 Score=52.94 Aligned_cols=92 Identities=23% Similarity=0.243 Sum_probs=61.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHH-hcCC--CCCCC---HHHHHHHH
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQ-LSLN--ICEGS---ESERAMML 241 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~-~~~~--~~~~~---~~~~~~~l 241 (266)
+...++=|+|+.|+||||+|-+++-... ..-..++|+...+.+++..+. +++.. +..- ....+ ..++...+
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~~aq--~~g~~a~fIDtE~~l~p~r~~-~l~~~~~d~l~v~~~~~~e~q~~i~~~~ 134 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVANAQ--KPGGKAAFIDTEHALDPERAK-QLGVDLLDNLLVSQPDTGEQQLEIAEKL 134 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHHHhh--cCCCeEEEEeCCCCCCHHHHH-HHHHhhhcceeEecCCCHHHHHHHHHHH
Confidence 3568999999999999999999877654 344588999999999998754 45544 3220 01112 23334444
Q ss_pred HHHHhcCCeEEEEEeCCCCCCC
Q 045699 242 CGQLKKGKKILFVLDNIWTSLD 263 (266)
Q Consensus 242 ~~~L~~~kr~LlvlDDvw~~~~ 263 (266)
.....+ +--|||+|-|.....
T Consensus 135 ~~~~~~-~i~LvVVDSvaa~~r 155 (279)
T COG0468 135 ARSGAE-KIDLLVVDSVAALVR 155 (279)
T ss_pred HHhccC-CCCEEEEecCcccch
Confidence 444444 567999998876543
No 211
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=97.09 E-value=0.0033 Score=55.45 Aligned_cols=92 Identities=14% Similarity=0.222 Sum_probs=60.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccc---c-CCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCC----------CCC
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKL---K-VCDEVVFVEVSRTPDVKRIQGDVADQLSLNIC----------EGS 233 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~---~-~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~----------~~~ 233 (266)
....++-|+|.+|+|||+|+..++-..... . .-..++|+....+|++.++ .+|+++++.+.. ..+
T Consensus 121 ~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~~~~~~l~~i~~~~~~~ 199 (342)
T PLN03186 121 ETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGLNGADVLENVAYARAYN 199 (342)
T ss_pred cCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCCChhhhccceEEEecCC
Confidence 346888899999999999998877543211 1 1237899999999999886 467777765321 122
Q ss_pred HHHHHHH---HHHHHhcCCeEEEEEeCCCC
Q 045699 234 ESERAMM---LCGQLKKGKKILFVLDNIWT 260 (266)
Q Consensus 234 ~~~~~~~---l~~~L~~~kr~LlvlDDvw~ 260 (266)
.+++... +...+...+--|||+|-+-.
T Consensus 200 ~e~~~~ll~~~~~~~~~~~~~LIVIDSI~a 229 (342)
T PLN03186 200 TDHQSELLLEAASMMAETRFALMIVDSATA 229 (342)
T ss_pred HHHHHHHHHHHHHHhhccCCCEEEEeCcHH
Confidence 3333322 22334433566899998754
No 212
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=97.09 E-value=0.0021 Score=53.23 Aligned_cols=95 Identities=23% Similarity=0.223 Sum_probs=55.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccc--------------------------------cCCCe---EEEEEeCC---
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKL--------------------------------KVCDE---VVFVEVSR--- 210 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~--------------------------------~~f~~---~~wv~v~~--- 210 (266)
.-..-.|+|++|+|||||.+.+..+.... .+|.. +.=+-+|.
T Consensus 56 ~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~ 135 (257)
T COG1119 56 PGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFA 135 (257)
T ss_pred CCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhCccCHHHHhhcccccccceeeeecccc
Confidence 34678899999999999999996653210 01111 00001111
Q ss_pred -------CCCHH--HHHHHHHHHhcC------CCCCCCHHH-HHHHHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699 211 -------TPDVK--RIQGDVADQLSL------NICEGSESE-RAMMLCGQLKKGKKILFVLDNIWTSLDL 264 (266)
Q Consensus 211 -------~~~~~--~~~~~i~~~~~~------~~~~~~~~~-~~~~l~~~L~~~kr~LlvlDDvw~~~~~ 264 (266)
..+.. .....+++.++. .+...|..+ ....+.+.|-. +.=|+|||+..+-.|+
T Consensus 136 siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~-~P~LLiLDEP~~GLDl 204 (257)
T COG1119 136 SIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVK-DPELLILDEPAQGLDL 204 (257)
T ss_pred cccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhc-CCCEEEecCccccCCh
Confidence 11222 233445666655 234555433 34556777777 8889999999887765
No 213
>PRK05922 type III secretion system ATPase; Validated
Probab=97.09 E-value=0.0045 Score=56.06 Aligned_cols=89 Identities=18% Similarity=0.325 Sum_probs=55.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCC-CCHHHHHHHHHHHhcCC-------CCCCC-H----
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRT-PDVKRIQGDVADQLSLN-------ICEGS-E---- 234 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~-~~~~~~~~~i~~~~~~~-------~~~~~-~---- 234 (266)
..-..++|+|.+|+|||||.+.+.+..+ .+...++.++.. ....+++.+.......+ ..+.+ .
T Consensus 155 ~~GqrigI~G~nG~GKSTLL~~Ia~~~~----~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~ 230 (434)
T PRK05922 155 GKGQRIGVFSEPGSGKSSLLSTIAKGSK----STINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVI 230 (434)
T ss_pred cCCcEEEEECCCCCChHHHHHHHhccCC----CCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHH
Confidence 3567899999999999999999987542 344455444442 23344554444333221 11111 1
Q ss_pred -HHHHHHHHHHHhc-CCeEEEEEeCCCC
Q 045699 235 -SERAMMLCGQLKK-GKKILFVLDNIWT 260 (266)
Q Consensus 235 -~~~~~~l~~~L~~-~kr~LlvlDDvw~ 260 (266)
...+..+.+++++ |++.||++||+..
T Consensus 231 a~~~a~tiAEyfrd~G~~VLl~~DslTR 258 (434)
T PRK05922 231 AGRAAMTIAEYFRDQGHRVLFIMDSLSR 258 (434)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 1234456777754 6999999999865
No 214
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.09 E-value=0.0021 Score=50.00 Aligned_cols=27 Identities=30% Similarity=0.524 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
.-.+++|+|.+|+|||||++.+.....
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~~ 50 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLLK 50 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 457999999999999999999988653
No 215
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=97.08 E-value=0.0044 Score=52.17 Aligned_cols=63 Identities=21% Similarity=0.219 Sum_probs=39.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEE-------EeCCCCCHHHHH--HHHHHHhcCCCC
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFV-------EVSRTPDVKRIQ--GDVADQLSLNIC 230 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv-------~v~~~~~~~~~~--~~i~~~~~~~~~ 230 (266)
++...|.++||.|+||||..|.++.....+..-..++-. ..+.+.+.++.. +++.++.+...+
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPN 88 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPN 88 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCC
Confidence 356788999999999999999999987643322222221 222334455443 467777666433
No 216
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=97.08 E-value=0.0036 Score=59.98 Aligned_cols=27 Identities=30% Similarity=0.491 Sum_probs=23.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
....+++|+|++|+|||||.+.+....
T Consensus 25 ~~Ge~v~LvG~NGsGKSTLLkiL~G~~ 51 (638)
T PRK10636 25 NPGQKVGLVGKNGCGKSTLLALLKNEI 51 (638)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 346789999999999999999999864
No 217
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=97.08 E-value=0.0038 Score=59.84 Aligned_cols=27 Identities=33% Similarity=0.523 Sum_probs=23.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
....+++|+|++|+|||||.+.+....
T Consensus 27 ~~Ge~v~LvG~NGsGKSTLLriiaG~~ 53 (635)
T PRK11147 27 EDNERVCLVGRNGAGKSTLMKILNGEV 53 (635)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 356799999999999999999998864
No 218
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.08 E-value=0.003 Score=59.93 Aligned_cols=49 Identities=18% Similarity=0.384 Sum_probs=40.5
Q ss_pred CcccccchHHHHHHHHHHhCCCCC-cEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 147 GYEAFESRKSILNDALDALSNPNV-DVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 147 ~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
...+++|.+..++.|..++....+ ..+.++|+.|+||||+|+.+.....
T Consensus 14 ~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~ 63 (585)
T PRK14950 14 TFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVN 63 (585)
T ss_pred CHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 466789999999999888876555 4568999999999999999987754
No 219
>PRK06936 type III secretion system ATPase; Provisional
Probab=97.08 E-value=0.0034 Score=56.86 Aligned_cols=89 Identities=18% Similarity=0.275 Sum_probs=57.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCC-HHHHHHHHHHHhcC-------CCCCCCH-H---
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPD-VKRIQGDVADQLSL-------NICEGSE-S--- 235 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~-~~~~~~~i~~~~~~-------~~~~~~~-~--- 235 (266)
.+-..++|+|..|+|||||.+.+.+... -+.++++.+.+... ..++....+..-+. ...+.+. .
T Consensus 160 ~~Gq~~~I~G~sG~GKStLl~~Ia~~~~----~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~ 235 (439)
T PRK06936 160 GEGQRMGIFAAAGGGKSTLLASLIRSAE----VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAK 235 (439)
T ss_pred cCCCEEEEECCCCCChHHHHHHHhcCCC----CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHH
Confidence 3567899999999999999999998653 35778888876543 33444443332111 1112221 1
Q ss_pred --HHHHHHHHHHhc-CCeEEEEEeCCCC
Q 045699 236 --ERAMMLCGQLKK-GKKILFVLDNIWT 260 (266)
Q Consensus 236 --~~~~~l~~~L~~-~kr~LlvlDDvw~ 260 (266)
..+..+.+++++ ||+.||++||+..
T Consensus 236 a~~~a~tiAEyfrd~G~~Vll~~DslTR 263 (439)
T PRK06936 236 AGFVATSIAEYFRDQGKRVLLLMDSVTR 263 (439)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 123446677754 6999999999864
No 220
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.07 E-value=0.0031 Score=61.77 Aligned_cols=46 Identities=24% Similarity=0.349 Sum_probs=36.9
Q ss_pred cccchHHHHHHHHHHhC------CCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 150 AFESRKSILNDALDALS------NPNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 150 ~~~gr~~~~~~l~~~l~------~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
.+.|.+..++.|.+++. ..+..++.++|+.|+|||++|+.+.+...
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~ 372 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALN 372 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 46788888888887653 22446899999999999999999999864
No 221
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.07 E-value=0.0069 Score=49.31 Aligned_cols=28 Identities=21% Similarity=0.324 Sum_probs=24.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
..-.+++|+|.+|+|||||++.+.....
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 31 KPGEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred CCCcEEEEECCCCCCHHHHHHHhcccCC
Confidence 3567999999999999999999987643
No 222
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.06 E-value=0.0021 Score=59.04 Aligned_cols=39 Identities=23% Similarity=0.286 Sum_probs=28.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEe
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEV 208 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v 208 (266)
...+.|+|+.|+|||+|++.+.+....+..--.++|++.
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~ 186 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTS 186 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEH
Confidence 467899999999999999999998753211223445543
No 223
>PRK07667 uridine kinase; Provisional
Probab=97.06 E-value=0.001 Score=53.87 Aligned_cols=37 Identities=24% Similarity=0.422 Sum_probs=28.6
Q ss_pred HHHHHHhC--CCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 159 NDALDALS--NPNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 159 ~~l~~~l~--~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
+.|.+.+. ..+..+|+|-|.+|+||||+|+.+.....
T Consensus 4 ~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~ 42 (193)
T PRK07667 4 NELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMK 42 (193)
T ss_pred HHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34444443 24457999999999999999999998764
No 224
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.06 E-value=0.0061 Score=52.13 Aligned_cols=27 Identities=30% Similarity=0.319 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
..-.+++|+|.+|+|||||++.+..-.
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (274)
T PRK13647 29 PEGSKTALLGPNGAGKSTLLLHLNGIY 55 (274)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 356899999999999999999998654
No 225
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.06 E-value=0.004 Score=57.23 Aligned_cols=26 Identities=31% Similarity=0.413 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
..+++++|++|+||||++..+.....
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~ 281 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCV 281 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHH
Confidence 47999999999999999999987653
No 226
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=97.05 E-value=0.0061 Score=52.70 Aligned_cols=93 Identities=26% Similarity=0.339 Sum_probs=56.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhcccc----CCC------------eEEEEEeCCCC------CH------------
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLK----VCD------------EVVFVEVSRTP------DV------------ 214 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~----~f~------------~~~wv~v~~~~------~~------------ 214 (266)
.-.++++.|++|+|||||.+.+....+... .+. .+.++ ++.+ +.
T Consensus 30 ~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~--~~~~~~~~~lT~~e~l~~~~~l~~ 107 (293)
T COG1131 30 PGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYV--PQEPSLYPELTVRENLEFFARLYG 107 (293)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEE--ccCCCCCccccHHHHHHHHHHHhC
Confidence 457999999999999999999988754321 011 12222 2221 11
Q ss_pred ------HHHHHHHHHHhcCCC------CCCCHH-HHHHHHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699 215 ------KRIQGDVADQLSLNI------CEGSES-ERAMMLCGQLKKGKKILFVLDNIWTSLDL 264 (266)
Q Consensus 215 ------~~~~~~i~~~~~~~~------~~~~~~-~~~~~l~~~L~~~kr~LlvlDDvw~~~~~ 264 (266)
.+-..++++.++... ...|.. ...-.+...|-. +.=|++||+..+-+|.
T Consensus 108 ~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~-~P~lliLDEPt~GLDp 169 (293)
T COG1131 108 LSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLH-DPELLILDEPTSGLDP 169 (293)
T ss_pred CChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhc-CCCEEEECCCCcCCCH
Confidence 223445666666532 223322 223345666666 7889999999987763
No 227
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.05 E-value=0.076 Score=46.67 Aligned_cols=37 Identities=19% Similarity=0.293 Sum_probs=28.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEe
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEV 208 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v 208 (266)
...+.++|..|+|||+||..+.+....++ -.++|+++
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g--~~V~y~t~ 219 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRG--KSVIYRTA 219 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCC--CeEEEEEH
Confidence 37799999999999999999999875322 24555554
No 228
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=97.05 E-value=0.0053 Score=54.85 Aligned_cols=26 Identities=23% Similarity=0.473 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
.-.+++|+|++|+|||||.+.+..-.
T Consensus 28 ~Ge~~~l~G~nGsGKSTLL~~iaGl~ 53 (369)
T PRK11000 28 EGEFVVFVGPSGCGKSTLLRMIAGLE 53 (369)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 46799999999999999999998764
No 229
>PRK08233 hypothetical protein; Provisional
Probab=97.05 E-value=0.0006 Score=54.25 Aligned_cols=26 Identities=35% Similarity=0.509 Sum_probs=23.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
..+|+|.|++|+||||||+.+.....
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 47899999999999999999998753
No 230
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.04 E-value=0.11 Score=47.10 Aligned_cols=27 Identities=30% Similarity=0.356 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
...+|.++|+.|+||||++..+.....
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~ 125 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQ 125 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 468999999999999998888876554
No 231
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.04 E-value=0.0082 Score=53.46 Aligned_cols=39 Identities=38% Similarity=0.470 Sum_probs=27.8
Q ss_pred HHHHHHHHHhCCC----CCcEEEEEcCCCCcHHH-HHHHHHHHh
Q 045699 156 SILNDALDALSNP----NVDVIGLCGVGGIGKTT-LAKIVCDQA 194 (266)
Q Consensus 156 ~~~~~l~~~l~~~----~~~vi~I~G~~G~GKTt-La~~v~~~~ 194 (266)
.....+..|+.++ +-++|.+||+.|+|||| ||+....-.
T Consensus 185 ~~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAar~~ 228 (407)
T COG1419 185 EKLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAARYV 228 (407)
T ss_pred HHHHHHHHhhccccccccCcEEEEECCCCCcHHHHHHHHHHHHH
Confidence 3445555565544 48999999999999965 777765544
No 232
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=97.04 E-value=0.0063 Score=56.79 Aligned_cols=94 Identities=22% Similarity=0.254 Sum_probs=56.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccc-c--CCC---------------eEEEEEeCCCC------CHH--------
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKL-K--VCD---------------EVVFVEVSRTP------DVK-------- 215 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~-~--~f~---------------~~~wv~v~~~~------~~~-------- 215 (266)
..-.+++|+|++|+|||||++.+..-.... + .|+ .+.|+ .|.+ +..
T Consensus 35 ~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v--~q~~~~~~~~tv~e~l~~~~~ 112 (510)
T PRK15439 35 HAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLV--PQEPLLFPNLSVKENILFGLP 112 (510)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEE--eccCccCCCCcHHHHhhcccc
Confidence 356799999999999999999998764211 1 011 11222 2221 111
Q ss_pred ------HHHHHHHHHhcCC------CCCCCHHHH-HHHHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699 216 ------RIQGDVADQLSLN------ICEGSESER-AMMLCGQLKKGKKILFVLDNIWTSLDL 264 (266)
Q Consensus 216 ------~~~~~i~~~~~~~------~~~~~~~~~-~~~l~~~L~~~kr~LlvlDDvw~~~~~ 264 (266)
+-..+++..++.. ....|..+. .-.|...|-. +.-+|+||+..+.+|.
T Consensus 113 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~-~p~lllLDEPt~~LD~ 173 (510)
T PRK15439 113 KRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMR-DSRILILDEPTASLTP 173 (510)
T ss_pred cchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHc-CCCEEEEECCCCCCCH
Confidence 1223455555552 123454333 3446666776 7889999999998774
No 233
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=97.04 E-value=0.0048 Score=56.26 Aligned_cols=92 Identities=21% Similarity=0.336 Sum_probs=60.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCC-CHHHHHHHHHHHhcC-------CCCCCC-HH---
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTP-DVKRIQGDVADQLSL-------NICEGS-ES--- 235 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~i~~~~~~-------~~~~~~-~~--- 235 (266)
..-..++|+|..|+|||||+..+....... +-+.++++-+.... ...++.++++..-.. ...+.+ ..
T Consensus 142 gkGQR~gIfa~~GvGKt~Ll~~i~~~~~~~-~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~ 220 (463)
T PRK09280 142 AKGGKIGLFGGAGVGKTVLIQELINNIAKE-HGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLR 220 (463)
T ss_pred ccCCEEEeecCCCCChhHHHHHHHHHHHhc-CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 356889999999999999999987765432 23567888887654 345566666553222 111222 11
Q ss_pred --HHHHHHHHHHhc--CCeEEEEEeCCCC
Q 045699 236 --ERAMMLCGQLKK--GKKILFVLDNIWT 260 (266)
Q Consensus 236 --~~~~~l~~~L~~--~kr~LlvlDDvw~ 260 (266)
.....+.+++++ ||+.||++||+..
T Consensus 221 a~~~a~tiAEyfrd~~G~~VLll~DslTR 249 (463)
T PRK09280 221 VALTGLTMAEYFRDVEGQDVLLFIDNIFR 249 (463)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecchHH
Confidence 224456777743 6999999999864
No 234
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.04 E-value=0.0011 Score=59.24 Aligned_cols=97 Identities=20% Similarity=0.237 Sum_probs=54.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhcccc------CCCeEEEE------EeCCCCCHHHHHHH-----------HHHHh
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLK------VCDEVVFV------EVSRTPDVKRIQGD-----------VADQL 225 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~------~f~~~~wv------~v~~~~~~~~~~~~-----------i~~~~ 225 (266)
--..|+|||++|+||+||.+.+.......+ |--.+-|. .....-++.+.+.. -+..+
T Consensus 612 mdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~f 691 (807)
T KOG0066|consen 612 MDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEALNGEETPVEYLQRKFNLPYQEARKQLGTF 691 (807)
T ss_pred ccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhh
Confidence 357899999999999999999987653321 11122233 22222233333221 12222
Q ss_pred cC-------CCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCCCCCC
Q 045699 226 SL-------NICEGSESERAMMLCGQLKKGKKILFVLDNIWTSLDLE 265 (266)
Q Consensus 226 ~~-------~~~~~~~~~~~~~l~~~L~~~kr~LlvlDDvw~~~~~~ 265 (266)
|. .+...+..+-+......|.-+..-+||||+..+.+|.+
T Consensus 692 GL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIE 738 (807)
T KOG0066|consen 692 GLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIE 738 (807)
T ss_pred hhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchh
Confidence 22 22344444444444444433377899999999998865
No 235
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.04 E-value=0.0042 Score=60.86 Aligned_cols=49 Identities=18% Similarity=0.285 Sum_probs=41.5
Q ss_pred CcccccchHHHHHHHHHHhCCCCCcE-EEEEcCCCCcHHHHHHHHHHHhc
Q 045699 147 GYEAFESRKSILNDALDALSNPNVDV-IGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 147 ~~~~~~gr~~~~~~l~~~l~~~~~~v-i~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
...+++|.+..++.|.+++...++.. +.++|+.|+||||+|+.+.+...
T Consensus 13 ~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~ 62 (824)
T PRK07764 13 TFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLN 62 (824)
T ss_pred CHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 35678999999999999987766654 78999999999999999988764
No 236
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.04 E-value=0.0014 Score=52.30 Aligned_cols=25 Identities=36% Similarity=0.389 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcc
Q 045699 172 VIGLCGVGGIGKTTLAKIVCDQAKK 196 (266)
Q Consensus 172 vi~I~G~~G~GKTtLa~~v~~~~~~ 196 (266)
.|.|+|++|+||||+|+.+.+....
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i 26 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGL 26 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4789999999999999999998543
No 237
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.04 E-value=0.00061 Score=50.73 Aligned_cols=22 Identities=45% Similarity=0.791 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 045699 173 IGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 173 i~I~G~~G~GKTtLa~~v~~~~ 194 (266)
|.|.|+.|+||||+|+.+....
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999998874
No 238
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=97.03 E-value=0.0022 Score=57.66 Aligned_cols=96 Identities=26% Similarity=0.346 Sum_probs=59.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhcccc-CC-CeEE-----EEEeCCCCCHHHHHHHHHHH-hcC-------------
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLK-VC-DEVV-----FVEVSRTPDVKRIQGDVADQ-LSL------------- 227 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~-~f-~~~~-----wv~v~~~~~~~~~~~~i~~~-~~~------------- 227 (266)
...||+|+|++|+||||+++.+..-.+... .+ +..+ ++....+-+..+++..+... ++.
T Consensus 366 ~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~~~~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~~ei~~pl~l 445 (591)
T COG1245 366 DGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKVSYKPQYISPDYDGTVEDLLRSAIRSAFGSSYFKTEIVKPLNL 445 (591)
T ss_pred cceEEEEECCCCcchHHHHHHHhccccCCCCCCccceEeecceeecCCCCCcHHHHHHHhhhhhcccchhHHhhcCccch
Confidence 457999999999999999999987654221 11 1111 22223334566777666654 222
Q ss_pred ------CCCCCCHHHHHHH-HHHHHhcCCeEEEEEeCCCCCCCCC
Q 045699 228 ------NICEGSESERAMM-LCGQLKKGKKILFVLDNIWTSLDLE 265 (266)
Q Consensus 228 ------~~~~~~~~~~~~~-l~~~L~~~kr~LlvlDDvw~~~~~~ 265 (266)
.....|..+++.. +...|.. .-=|-+||+....+|-|
T Consensus 446 ~~i~e~~v~~LSGGELQRvaIaa~L~r-eADlYllDEPSA~LDvE 489 (591)
T COG1245 446 EDLLERPVDELSGGELQRVAIAAALSR-EADLYLLDEPSAYLDVE 489 (591)
T ss_pred HHHHhcccccCCchhHHHHHHHHHhcc-ccCEEEecCchhhccHH
Confidence 2234555566543 4556665 66788888887776643
No 239
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=97.03 E-value=0.0043 Score=56.42 Aligned_cols=88 Identities=17% Similarity=0.271 Sum_probs=54.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCC-CHHHHHHHHHHHhcCC--------CCCCCHH----
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTP-DVKRIQGDVADQLSLN--------ICEGSES---- 235 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~i~~~~~~~--------~~~~~~~---- 235 (266)
.-..++|+|..|+|||||++.+.+.. ..+.++...+.... ...++...+...-+.. .+.....
T Consensus 167 ~GqrigI~G~sG~GKSTLl~~I~g~~----~~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~a 242 (451)
T PRK05688 167 RGQRLGLFAGTGVGKSVLLGMMTRFT----EADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRA 242 (451)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC----CCCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHHH
Confidence 45789999999999999999997643 23454555555443 3445555554443221 1122221
Q ss_pred -HHHHHHHHHHhc-CCeEEEEEeCCCC
Q 045699 236 -ERAMMLCGQLKK-GKKILFVLDNIWT 260 (266)
Q Consensus 236 -~~~~~l~~~L~~-~kr~LlvlDDvw~ 260 (266)
..+..+.+++++ |++.||++||+..
T Consensus 243 ~~~a~aiAEyfrd~G~~VLl~~DslTR 269 (451)
T PRK05688 243 AMYCTRIAEYFRDKGKNVLLLMDSLTR 269 (451)
T ss_pred HHHHHHHHHHHHHCCCCEEEEecchhH
Confidence 223446677754 6999999999864
No 240
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.02 E-value=0.0059 Score=54.95 Aligned_cols=47 Identities=11% Similarity=0.231 Sum_probs=37.6
Q ss_pred cccccchHHHHHHHHHHhCCCC----------CcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 148 YEAFESRKSILNDALDALSNPN----------VDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 148 ~~~~~gr~~~~~~l~~~l~~~~----------~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
..+++|.+..++.|.+++..+. ..-+.++|+.|+|||++|+.+....
T Consensus 4 f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l 60 (394)
T PRK07940 4 WDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAAL 60 (394)
T ss_pred hhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 3467898888888888886543 3457899999999999999997764
No 241
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.02 E-value=0.0057 Score=49.78 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 171 DVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 171 ~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
.+++|.|++|+|||||++.+....
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHH
Confidence 899999999999999999997654
No 242
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=97.02 E-value=0.0048 Score=58.25 Aligned_cols=28 Identities=36% Similarity=0.506 Sum_probs=24.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
..-.+++|+|++|+|||||.+.+.....
T Consensus 31 ~~Ge~~~iiG~NGsGKSTLlk~i~G~~~ 58 (556)
T PRK11819 31 FPGAKIGVLGLNGAGKSTLLRIMAGVDK 58 (556)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3567999999999999999999998753
No 243
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=97.02 E-value=0.0078 Score=54.35 Aligned_cols=27 Identities=33% Similarity=0.537 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
..-.+++|+|++|+|||||.+.+....
T Consensus 27 ~~Geiv~liGpNGaGKSTLLk~LaGll 53 (402)
T PRK09536 27 REGSLVGLVGPNGAGKTTLLRAINGTL 53 (402)
T ss_pred CCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 356799999999999999999998754
No 244
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.02 E-value=0.0043 Score=57.33 Aligned_cols=48 Identities=19% Similarity=0.198 Sum_probs=34.3
Q ss_pred cccccchHHHHHHHHHHh---C-------CCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 148 YEAFESRKSILNDALDAL---S-------NPNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 148 ~~~~~gr~~~~~~l~~~l---~-------~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
..++.|.+..++.+.+.. . -...+-|.++|+.|+|||.+|+.+.+...
T Consensus 227 ~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~ 284 (489)
T CHL00195 227 ISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQ 284 (489)
T ss_pred HHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Confidence 445677776666554421 1 12346688999999999999999999764
No 245
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.01 E-value=0.0022 Score=48.79 Aligned_cols=42 Identities=29% Similarity=0.369 Sum_probs=32.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHH
Q 045699 173 IGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQG 219 (266)
Q Consensus 173 i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~ 219 (266)
|-++|+.|+|||+||+.+..... ....-+.+++..+..++..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~-----~~~~~i~~~~~~~~~dl~g 43 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLG-----RPVIRINCSSDTTEEDLIG 43 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHT-----CEEEEEE-TTTSTHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHhh-----cceEEEEecccccccccee
Confidence 67899999999999999999863 2344568888888887664
No 246
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=97.01 E-value=0.0084 Score=49.53 Aligned_cols=27 Identities=41% Similarity=0.635 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
..-.+++|+|.+|+|||||++.+....
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (223)
T TIGR03740 24 PKNSVYGLLGPNGAGKSTLLKMITGIL 50 (223)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356799999999999999999998764
No 247
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.01 E-value=0.0084 Score=51.11 Aligned_cols=27 Identities=30% Similarity=0.489 Sum_probs=23.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
..-.+++|+|++|+|||||++.+..-.
T Consensus 33 ~~Ge~~~I~G~nGsGKSTLl~~i~Gl~ 59 (269)
T PRK13648 33 PKGQWTSIVGHNGSGKSTIAKLMIGIE 59 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 356899999999999999999998764
No 248
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=97.01 E-value=0.0064 Score=50.32 Aligned_cols=26 Identities=35% Similarity=0.561 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
.-.+++|+|.+|+|||||++.+....
T Consensus 5 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 30 (223)
T TIGR03771 5 KGELLGLLGPNGAGKTTLLRAILGLI 30 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45799999999999999999998753
No 249
>PRK04328 hypothetical protein; Provisional
Probab=97.01 E-value=0.0058 Score=51.53 Aligned_cols=87 Identities=18% Similarity=0.241 Sum_probs=53.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCC------------------
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNI------------------ 229 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~------------------ 229 (266)
+.-.++.|.|.+|+|||+|+..+....- ..-+..+|++....+ .++.+ .+++++.+.
T Consensus 21 p~gs~ili~G~pGsGKT~l~~~fl~~~~--~~ge~~lyis~ee~~--~~i~~-~~~~~g~d~~~~~~~~~l~iid~~~~~ 95 (249)
T PRK04328 21 PERNVVLLSGGPGTGKSIFSQQFLWNGL--QMGEPGVYVALEEHP--VQVRR-NMRQFGWDVRKYEEEGKFAIVDAFTGG 95 (249)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHH--hcCCcEEEEEeeCCH--HHHHH-HHHHcCCCHHHHhhcCCEEEEeccccc
Confidence 3568999999999999999998655432 234667888876643 34333 334443310
Q ss_pred -------------CCCCHHHHHHHHHHHHhcCCeEEEEEeCCC
Q 045699 230 -------------CEGSESERAMMLCGQLKKGKKILFVLDNIW 259 (266)
Q Consensus 230 -------------~~~~~~~~~~~l~~~L~~~kr~LlvlDDvw 259 (266)
+..+..++...+.+.++..+.-++|+|-+.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSlt 138 (249)
T PRK04328 96 IGSAAKREKYVVKDPDDVRELIDVLRQAIKDIGAKRVVIDSVS 138 (249)
T ss_pred cccccccccccccCcccHHHHHHHHHHHHHhhCCCEEEEeChh
Confidence 112344555666666654344478898875
No 250
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=97.00 E-value=0.0073 Score=52.41 Aligned_cols=27 Identities=30% Similarity=0.496 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
..-.+++|+|++|+|||||.+.+....
T Consensus 26 ~~Gei~~l~G~NGaGKTTLl~~l~Gl~ 52 (301)
T TIGR03522 26 QKGRIVGFLGPNGAGKSTTMKIITGYL 52 (301)
T ss_pred eCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 356799999999999999999998764
No 251
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.00 E-value=0.0062 Score=54.44 Aligned_cols=27 Identities=37% Similarity=0.417 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
+.++|+++|++|+||||++..+.....
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~ 266 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFH 266 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHH
Confidence 357999999999999999999977654
No 252
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=97.00 E-value=0.0071 Score=51.27 Aligned_cols=88 Identities=18% Similarity=0.205 Sum_probs=60.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCC-------------------
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLN------------------- 228 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~------------------- 228 (266)
+..+++.|.|.+|+|||+++.++..... ..+..++||+....+ ..+.+...+ ++..
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~--~~ge~vlyvs~~e~~--~~l~~~~~~-~g~d~~~~~~~g~l~i~d~~~~~ 95 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGA--REGEPVLYVSTEESP--EELLENARS-FGWDLEVYIEKGKLAILDAFLSE 95 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHH--hcCCcEEEEEecCCH--HHHHHHHHH-cCCCHHHHhhcCCEEEEEccccc
Confidence 5679999999999999999999888765 358899999988764 444444332 3220
Q ss_pred CC--------CCCHHHHHHHHHHHHhcCCeEEEEEeCCCC
Q 045699 229 IC--------EGSESERAMMLCGQLKKGKKILFVLDNIWT 260 (266)
Q Consensus 229 ~~--------~~~~~~~~~~l~~~L~~~kr~LlvlDDvw~ 260 (266)
.. ..+...+...+.+..+.-+...+|+|.+..
T Consensus 96 ~~~~~~~~~~~~~~~~l~~~I~~~~~~~~~~~~ViDsi~~ 135 (260)
T COG0467 96 KGLVSIVVGDPLDLEELLDRIREIVEKEGADRVVIDSITE 135 (260)
T ss_pred cccccccccCCccHHHHHHHHHHHHHHhCCCEEEEeCCch
Confidence 00 123455666777776653567788888763
No 253
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.99 E-value=0.0065 Score=49.93 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=23.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
....+++|+|.+|+|||||++.+....
T Consensus 35 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 61 (214)
T PRK13543 35 DAGEALLVQGDNGAGKTTLLRVLAGLL 61 (214)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 356799999999999999999998764
No 254
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.99 E-value=0.0033 Score=57.50 Aligned_cols=26 Identities=31% Similarity=0.390 Sum_probs=23.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
...+.|+|+.|+|||+|++.+.+...
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~ 166 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALR 166 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46789999999999999999999875
No 255
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=96.98 E-value=0.0098 Score=52.82 Aligned_cols=26 Identities=23% Similarity=0.429 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
.-.+++|+|++|+|||||++.+..-.
T Consensus 23 ~Ge~~~l~G~nGsGKSTLl~~iaGl~ 48 (352)
T PRK11144 23 AQGITAIFGRSGAGKTSLINAISGLT 48 (352)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45799999999999999999998764
No 256
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=96.98 E-value=0.0073 Score=51.34 Aligned_cols=90 Identities=13% Similarity=0.204 Sum_probs=54.7
Q ss_pred CCcEEEEEcCCCCcHHHHH-HHHHHHhccccCCCeEEEEEeCCCCC-HHHHHHHHHHHhcC-------CCCCCC-HHH--
Q 045699 169 NVDVIGLCGVGGIGKTTLA-KIVCDQAKKLKVCDEVVFVEVSRTPD-VKRIQGDVADQLSL-------NICEGS-ESE-- 236 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa-~~v~~~~~~~~~f~~~~wv~v~~~~~-~~~~~~~i~~~~~~-------~~~~~~-~~~-- 236 (266)
+-..++|+|..|+|||+|| ..+.+... .-..++++.+.+... ..++.+++...-.. ...+.+ ...
T Consensus 68 rGQr~~Ifg~~g~GKt~L~l~~i~~~~~---~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 144 (274)
T cd01132 68 RGQRELIIGDRQTGKTAIAIDTIINQKG---KKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYL 144 (274)
T ss_pred cCCEEEeeCCCCCCccHHHHHHHHHhcC---CCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHH
Confidence 5678999999999999995 66766431 223347777776543 44555555543211 111111 111
Q ss_pred ---HHHHHHHHHhc-CCeEEEEEeCCCCC
Q 045699 237 ---RAMMLCGQLKK-GKKILFVLDNIWTS 261 (266)
Q Consensus 237 ---~~~~l~~~L~~-~kr~LlvlDDvw~~ 261 (266)
.+..+.+++++ |+..||++||+...
T Consensus 145 a~~~a~aiAE~fr~~G~~Vlvl~DslTr~ 173 (274)
T cd01132 145 APYTGCAMGEYFMDNGKHALIIYDDLSKQ 173 (274)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEcChHHH
Confidence 23445566654 59999999998653
No 257
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.97 E-value=0.00059 Score=55.37 Aligned_cols=23 Identities=43% Similarity=0.713 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 045699 172 VIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 172 vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
+|+|.|++|+|||||++.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998864
No 258
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.0036 Score=58.47 Aligned_cols=48 Identities=23% Similarity=0.299 Sum_probs=36.1
Q ss_pred cccccchHHHHHHHHHHhC-------------CCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 148 YEAFESRKSILNDALDALS-------------NPNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 148 ~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
..++-|.++.+.+|-+... -...+=|..+|++|||||++|+.+.+..+
T Consensus 433 W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~ 493 (693)
T KOG0730|consen 433 WDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAG 493 (693)
T ss_pred hhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhc
Confidence 4556677777766654432 13567788999999999999999999865
No 259
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=96.96 E-value=0.0033 Score=57.18 Aligned_cols=27 Identities=30% Similarity=0.522 Sum_probs=23.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
..-..++|+|++|+||||||+.+..-.
T Consensus 360 ~~G~~lgIIGPSgSGKSTLaR~lvG~w 386 (580)
T COG4618 360 QAGEALGIIGPSGSGKSTLARLLVGIW 386 (580)
T ss_pred cCCceEEEECCCCccHHHHHHHHHccc
Confidence 356799999999999999999997653
No 260
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.96 E-value=0.00083 Score=51.19 Aligned_cols=23 Identities=48% Similarity=0.709 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 045699 172 VIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 172 vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
+|.++|+.|+||||+|+.+....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 57899999999999999998764
No 261
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.94 E-value=0.0093 Score=57.61 Aligned_cols=58 Identities=17% Similarity=0.192 Sum_probs=34.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCC--HHHHHHHHHHHhcCC
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPD--VKRIQGDVADQLSLN 228 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~--~~~~~~~i~~~~~~~ 228 (266)
..+++++|++|+||||++.++.......+....+..++.. .+. ..+-++...+.++.+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~D-t~RigA~eQL~~~a~~~gvp 244 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTD-SFRIGALEQLRIYGRILGVP 244 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCc-ccchHHHHHHHHHHHhCCCC
Confidence 4799999999999999888887665321111234444332 222 334444555555543
No 262
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.94 E-value=0.01 Score=54.91 Aligned_cols=49 Identities=20% Similarity=0.261 Sum_probs=40.4
Q ss_pred CcccccchHHHHHHHHHHhCCCCCcE-EEEEcCCCCcHHHHHHHHHHHhc
Q 045699 147 GYEAFESRKSILNDALDALSNPNVDV-IGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 147 ~~~~~~gr~~~~~~l~~~l~~~~~~v-i~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
...+++|.+..+..|.+++...++.. +.++|+.|+||||+|+.+.....
T Consensus 14 ~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~ 63 (486)
T PRK14953 14 FFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLN 63 (486)
T ss_pred cHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 35678899999999999987666554 56899999999999999987653
No 263
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.94 E-value=0.0045 Score=47.63 Aligned_cols=38 Identities=21% Similarity=0.368 Sum_probs=29.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEE
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFV 206 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv 206 (266)
...++.+.|+.|+||+||..-+.......-.|...+|+
T Consensus 27 ~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l 64 (213)
T COG4136 27 KGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWL 64 (213)
T ss_pred CCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEE
Confidence 46799999999999999999888876633233446777
No 264
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=96.94 E-value=0.0078 Score=54.80 Aligned_cols=93 Identities=19% Similarity=0.333 Sum_probs=61.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCC-CHHHHHHHHHHHhcC-------CCCCCC-HH---
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTP-DVKRIQGDVADQLSL-------NICEGS-ES--- 235 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~i~~~~~~-------~~~~~~-~~--- 235 (266)
.+-..++|+|..|+|||||+..+...... ++-+.++++-+.... ...++..++...-.. ...+.+ ..
T Consensus 141 g~GQr~~If~~~G~GKt~L~~~~~~~~~~-~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~ 219 (461)
T TIGR01039 141 AKGGKIGLFGGAGVGKTVLIQELINNIAK-EHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMR 219 (461)
T ss_pred ccCCEEEeecCCCCChHHHHHHHHHHHHh-cCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 35688999999999999999998876542 223578888887654 345666666543221 111222 21
Q ss_pred --HHHHHHHHHHhc--CCeEEEEEeCCCCC
Q 045699 236 --ERAMMLCGQLKK--GKKILFVLDNIWTS 261 (266)
Q Consensus 236 --~~~~~l~~~L~~--~kr~LlvlDDvw~~ 261 (266)
..+..+.+++++ |++.||++||+...
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLll~DslTR~ 249 (461)
T TIGR01039 220 VALTGLTMAEYFRDEQGQDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHHHHHhcCCeeEEEecchhHH
Confidence 234456788854 69999999998653
No 265
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.002 Score=58.96 Aligned_cols=49 Identities=31% Similarity=0.439 Sum_probs=37.4
Q ss_pred cccccch---HHHHHHHHHHhCCC--------C-CcEEEEEcCCCCcHHHHHHHHHHHhcc
Q 045699 148 YEAFESR---KSILNDALDALSNP--------N-VDVIGLCGVGGIGKTTLAKIVCDQAKK 196 (266)
Q Consensus 148 ~~~~~gr---~~~~~~l~~~l~~~--------~-~~vi~I~G~~G~GKTtLa~~v~~~~~~ 196 (266)
..++-|- ..++++|+++|.++ + .+=|.++|++|.|||-||+.|.....+
T Consensus 303 F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~V 363 (752)
T KOG0734|consen 303 FEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGV 363 (752)
T ss_pred cccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCC
Confidence 3344454 45678889998763 2 356889999999999999999998764
No 266
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=96.93 E-value=0.0025 Score=57.78 Aligned_cols=90 Identities=17% Similarity=0.283 Sum_probs=51.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCC-CCCHHHHHHHHHHHhcCC-------CCCC------C
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSR-TPDVKRIQGDVADQLSLN-------ICEG------S 233 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~i~~~~~~~-------~~~~------~ 233 (266)
..-..++|+|.+|+|||||++.+.+... .+..+...+.. .....++....+..-+.. ..+. .
T Consensus 153 ~~GQ~igI~G~sGaGKSTLl~~I~g~~~----~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s~~~rl~ 228 (434)
T PRK07196 153 GKGQRVGLMAGSGVGKSVLLGMITRYTQ----ADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADESPLMRIK 228 (434)
T ss_pred ecceEEEEECCCCCCccHHHHHHhcccC----CCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCCChhhhHH
Confidence 4568899999999999999999887543 23333333432 222333333333332221 1111 1
Q ss_pred HHHHHHHHHHHHhc-CCeEEEEEeCCCCC
Q 045699 234 ESERAMMLCGQLKK-GKKILFVLDNIWTS 261 (266)
Q Consensus 234 ~~~~~~~l~~~L~~-~kr~LlvlDDvw~~ 261 (266)
..+....+.+++.+ |+..||++||+...
T Consensus 229 a~e~a~~iAEyfr~~g~~Vll~~Dsltr~ 257 (434)
T PRK07196 229 ATELCHAIATYYRDKGHDVLLLVDSLTRY 257 (434)
T ss_pred HHHHHHHHHHHhhhccCCEEEeecchhHH
Confidence 22334445555543 59999999998654
No 267
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=96.93 E-value=0.0077 Score=57.76 Aligned_cols=94 Identities=27% Similarity=0.317 Sum_probs=54.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccc-c--CCCe---EEEEEeCCCC-------CHHHH----------------H
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKL-K--VCDE---VVFVEVSRTP-------DVKRI----------------Q 218 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~-~--~f~~---~~wv~v~~~~-------~~~~~----------------~ 218 (266)
....+++|+|++|+|||||.+.+....... + .|.. +.| +.|.. ++.+. .
T Consensus 343 ~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~y--~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~ 420 (635)
T PRK11147 343 QRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAY--FDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHV 420 (635)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEEE--EeCcccccCCCCCHHHHHHhhcccccccchHHHH
Confidence 356799999999999999999998864321 1 1221 222 23321 11111 1
Q ss_pred HHHHHHhcC-------CCCCCCHHHHH-HHHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699 219 GDVADQLSL-------NICEGSESERA-MMLCGQLKKGKKILFVLDNIWTSLDL 264 (266)
Q Consensus 219 ~~i~~~~~~-------~~~~~~~~~~~-~~l~~~L~~~kr~LlvlDDvw~~~~~ 264 (266)
..++..++. .....|..+.. -.|...|-. +.-+|+||++.+.+|.
T Consensus 421 ~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~-~p~lLlLDEPt~~LD~ 473 (635)
T PRK11147 421 LGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLK-PSNLLILDEPTNDLDV 473 (635)
T ss_pred HHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhc-CCCEEEEcCCCCCCCH
Confidence 223333333 12234544433 335566666 7889999999998875
No 268
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=96.93 E-value=0.0085 Score=55.61 Aligned_cols=27 Identities=26% Similarity=0.432 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
..-.+++|+|++|+|||||++.+....
T Consensus 27 ~~Ge~~~liG~nGsGKSTLl~~l~G~~ 53 (490)
T PRK10938 27 NAGDSWAFVGANGSGKSALARALAGEL 53 (490)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 356789999999999999999998754
No 269
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.93 E-value=0.00093 Score=44.53 Aligned_cols=23 Identities=39% Similarity=0.638 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 045699 172 VIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 172 vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
+|.|.|..|+||||+++.+.+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999875
No 270
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.93 E-value=0.0013 Score=61.12 Aligned_cols=48 Identities=19% Similarity=0.286 Sum_probs=41.3
Q ss_pred cccccchHHHHHHHHHHh------CCCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 148 YEAFESRKSILNDALDAL------SNPNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 148 ~~~~~gr~~~~~~l~~~l------~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
..++.|.++.+++|++.| .+...+++.++|+.|+||||||+.+.+-..
T Consensus 75 F~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le 128 (644)
T PRK15455 75 FEEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLME 128 (644)
T ss_pred hhcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHH
Confidence 346789999999999888 345678999999999999999999999765
No 271
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.92 E-value=0.011 Score=50.56 Aligned_cols=28 Identities=36% Similarity=0.520 Sum_probs=23.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
...+++.++|++|+||||++..+.....
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~ 97 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLK 97 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 3468999999999999998888876654
No 272
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=96.92 E-value=0.0069 Score=57.39 Aligned_cols=49 Identities=22% Similarity=0.441 Sum_probs=41.5
Q ss_pred CcccccchHHHHHHHHHHhCCCCCc-EEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 147 GYEAFESRKSILNDALDALSNPNVD-VIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 147 ~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
...+++|.+..++.|.+++...++. -+-++|+.|+||||+|+.+.+...
T Consensus 22 ~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~ 71 (598)
T PRK09111 22 TFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALN 71 (598)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhC
Confidence 4667899999999999988766654 688999999999999999988754
No 273
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.92 E-value=0.0022 Score=52.86 Aligned_cols=93 Identities=20% Similarity=0.257 Sum_probs=57.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEE----------------------EeCCCCC------------
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFV----------------------EVSRTPD------------ 213 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv----------------------~v~~~~~------------ 213 (266)
..-..++|+|+.|+|||||...+..-.+.. ...+++ .|-|.++
T Consensus 29 ~~Ge~vaI~GpSGSGKSTLLniig~ld~pt---~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~ 105 (226)
T COG1136 29 EAGEFVAIVGPSGSGKSTLLNLLGGLDKPT---SGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVE 105 (226)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHH
Confidence 456799999999999999999997543321 111111 1112211
Q ss_pred ------------HHHHHHHHHHHhcCC-------CCCCCHHH-HHHHHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699 214 ------------VKRIQGDVADQLSLN-------ICEGSESE-RAMMLCGQLKKGKKILFVLDNIWTSLDL 264 (266)
Q Consensus 214 ------------~~~~~~~i~~~~~~~-------~~~~~~~~-~~~~l~~~L~~~kr~LlvlDDvw~~~~~ 264 (266)
..+....+++.++.. ....|..+ ..-.+.+.|-. ..-+|+.|+.....|-
T Consensus 106 lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~-~P~iilADEPTgnLD~ 175 (226)
T COG1136 106 LPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALIN-NPKIILADEPTGNLDS 175 (226)
T ss_pred hHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhc-CCCeEEeeCccccCCh
Confidence 123344566665552 22455433 34457778887 8899999999887764
No 274
>PRK09099 type III secretion system ATPase; Provisional
Probab=96.92 E-value=0.0047 Score=56.13 Aligned_cols=89 Identities=17% Similarity=0.324 Sum_probs=54.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCC-CCCHHHHHHHHHHHhcC-------CCCCCC-H----
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSR-TPDVKRIQGDVADQLSL-------NICEGS-E---- 234 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~i~~~~~~-------~~~~~~-~---- 234 (266)
.+-..++|+|..|+|||||++.+..... -+..+.+.+.+ .....++.+.+...-+. ...+.+ .
T Consensus 161 ~~Gq~~~I~G~sG~GKTtLl~~ia~~~~----~d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~ 236 (441)
T PRK09099 161 GEGQRMGIFAPAGVGKSTLMGMFARGTQ----CDVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAK 236 (441)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC----CCeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHH
Confidence 3568999999999999999999987543 23334444443 33444555555443222 111111 1
Q ss_pred -HHHHHHHHHHHhc-CCeEEEEEeCCCC
Q 045699 235 -SERAMMLCGQLKK-GKKILFVLDNIWT 260 (266)
Q Consensus 235 -~~~~~~l~~~L~~-~kr~LlvlDDvw~ 260 (266)
......+.+++++ ||..||++||+..
T Consensus 237 a~~~a~tiAEyfrd~G~~VLl~~DslTr 264 (441)
T PRK09099 237 AAYVATAIAEYFRDRGLRVLLMMDSLTR 264 (441)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 1223446677754 6999999999864
No 275
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.92 E-value=0.0026 Score=51.72 Aligned_cols=25 Identities=24% Similarity=0.322 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 171 DVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 171 ~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
.+|.|+|+.|+||||+++.+.....
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4789999999999999998877643
No 276
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=96.91 E-value=0.0054 Score=55.37 Aligned_cols=89 Identities=21% Similarity=0.325 Sum_probs=54.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCC-CHHHHHHHHHHHhcC-------CCCCCC-HH---
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTP-DVKRIQGDVADQLSL-------NICEGS-ES--- 235 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~i~~~~~~-------~~~~~~-~~--- 235 (266)
..-..++|+|.+|+|||||++.+.+..+ .+..+...+.... ...++.......-.. ...+.+ ..
T Consensus 135 ~~Gq~~~I~G~sG~GKTtLl~~I~~~~~----~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~ 210 (411)
T TIGR03496 135 GRGQRMGIFAGSGVGKSTLLGMMARYTE----ADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLR 210 (411)
T ss_pred ecCcEEEEECCCCCCHHHHHHHHhcCCC----CCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHH
Confidence 3567899999999999999998887543 2455556666543 344444444433211 111222 11
Q ss_pred --HHHHHHHHHHhc-CCeEEEEEeCCCC
Q 045699 236 --ERAMMLCGQLKK-GKKILFVLDNIWT 260 (266)
Q Consensus 236 --~~~~~l~~~L~~-~kr~LlvlDDvw~ 260 (266)
..+..+.+++++ |++.||++||+..
T Consensus 211 a~~~a~tiAEyfr~~G~~Vll~~Dsltr 238 (411)
T TIGR03496 211 AAFYATAIAEYFRDQGKDVLLLMDSLTR 238 (411)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEeChHH
Confidence 223445666643 6999999999864
No 277
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=96.91 E-value=0.0065 Score=49.05 Aligned_cols=28 Identities=32% Similarity=0.522 Sum_probs=25.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
....+.+|.|++|.||||+.+.++.-..
T Consensus 26 e~Gei~GlLG~NGAGKTT~LRmiatlL~ 53 (245)
T COG4555 26 EEGEITGLLGENGAGKTTLLRMIATLLI 53 (245)
T ss_pred ccceEEEEEcCCCCCchhHHHHHHHhcc
Confidence 4678999999999999999999998765
No 278
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.91 E-value=0.0012 Score=54.95 Aligned_cols=25 Identities=36% Similarity=0.514 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 171 DVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 171 ~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
..|.|+|++|+||||+|+.+.....
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~~g 31 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKKEN 31 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3488999999999999999988754
No 279
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=96.91 E-value=0.0084 Score=56.60 Aligned_cols=94 Identities=24% Similarity=0.367 Sum_probs=55.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhcccc---CCCe---EEEEEeCCCC-------CHHH----------------HH
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLK---VCDE---VVFVEVSRTP-------DVKR----------------IQ 218 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~f~~---~~wv~v~~~~-------~~~~----------------~~ 218 (266)
..-.+++|+|++|+|||||++.++....... .|.. +.| ++|.+ +..+ -.
T Consensus 348 ~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~--v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~ 425 (556)
T PRK11819 348 PPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAY--VDQSRDALDPNKTVWEEISGGLDIIKVGNREIPS 425 (556)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEE--EeCchhhcCCCCCHHHHHHhhcccccccccHHHH
Confidence 3567999999999999999999987643111 1111 122 23321 1111 11
Q ss_pred HHHHHHhcCC-------CCCCCHHHHH-HHHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699 219 GDVADQLSLN-------ICEGSESERA-MMLCGQLKKGKKILFVLDNIWTSLDL 264 (266)
Q Consensus 219 ~~i~~~~~~~-------~~~~~~~~~~-~~l~~~L~~~kr~LlvlDDvw~~~~~ 264 (266)
+.++..++.. ....|..+.. -.|...|.. +.-+++||+..+.+|.
T Consensus 426 ~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~-~p~lllLDEPt~~LD~ 478 (556)
T PRK11819 426 RAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQ-GGNVLLLDEPTNDLDV 478 (556)
T ss_pred HHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhc-CCCEEEEcCCCCCCCH
Confidence 2345555542 1234544433 345666666 8889999999998774
No 280
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=96.91 E-value=0.009 Score=48.30 Aligned_cols=94 Identities=16% Similarity=0.182 Sum_probs=52.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh--ccc-c--CCCeE---------EEEEeCCCCCH---HHHHHHHHHHhcCCCC
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQA--KKL-K--VCDEV---------VFVEVSRTPDV---KRIQGDVADQLSLNIC 230 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~--~~~-~--~f~~~---------~wv~v~~~~~~---~~~~~~i~~~~~~~~~ 230 (266)
..-.+++|.|++|+|||||.+.+..-. ... + .|+.. ....+++.+.. ..+...+.-.. ...
T Consensus 33 ~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~--~~~ 110 (194)
T cd03213 33 KPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAA--KLR 110 (194)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHH--Hhc
Confidence 356799999999999999999998764 321 1 01100 01122333211 12222222111 011
Q ss_pred CCCHHH-HHHHHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699 231 EGSESE-RAMMLCGQLKKGKKILFVLDNIWTSLDL 264 (266)
Q Consensus 231 ~~~~~~-~~~~l~~~L~~~kr~LlvlDDvw~~~~~ 264 (266)
..|..+ ..-.|...|-. +.-+++||++.+..|.
T Consensus 111 ~LS~G~~qrv~laral~~-~p~illlDEP~~~LD~ 144 (194)
T cd03213 111 GLSGGERKRVSIALELVS-NPSLLFLDEPTSGLDS 144 (194)
T ss_pred cCCHHHHHHHHHHHHHHc-CCCEEEEeCCCcCCCH
Confidence 344333 33345666666 7789999999888764
No 281
>PRK09087 hypothetical protein; Validated
Probab=96.90 E-value=0.013 Score=48.74 Aligned_cols=26 Identities=38% Similarity=0.442 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
....+.|+|+.|+|||+|++.+++..
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~ 68 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKS 68 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhc
Confidence 34679999999999999999988764
No 282
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=96.90 E-value=0.0092 Score=58.01 Aligned_cols=27 Identities=33% Similarity=0.443 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
+....++|+|..|+|||||++.+..-.
T Consensus 503 ~~Ge~vaIvG~sGsGKSTLlklL~gl~ 529 (710)
T TIGR03796 503 QPGQRVALVGGSGSGKSTIAKLVAGLY 529 (710)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 457899999999999999999997654
No 283
>PRK06762 hypothetical protein; Provisional
Probab=96.89 E-value=0.001 Score=52.32 Aligned_cols=25 Identities=36% Similarity=0.470 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
..+|.|.|+.|+||||+|+.+.+..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998875
No 284
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.89 E-value=0.0059 Score=47.92 Aligned_cols=28 Identities=36% Similarity=0.497 Sum_probs=24.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
.....++|.|++|+||+||.+.|++-..
T Consensus 27 ~~Ge~iaitGPSG~GKStllk~va~Lis 54 (223)
T COG4619 27 RAGEFIAITGPSGCGKSTLLKIVASLIS 54 (223)
T ss_pred cCCceEEEeCCCCccHHHHHHHHHhccC
Confidence 3467899999999999999999988643
No 285
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.89 E-value=0.00088 Score=55.13 Aligned_cols=24 Identities=21% Similarity=0.231 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
.+++.|.|++|.|||||.+.+.-.
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~ 52 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALI 52 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHH
Confidence 488999999999999999998743
No 286
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.89 E-value=0.0064 Score=48.37 Aligned_cols=25 Identities=36% Similarity=0.509 Sum_probs=22.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
..++.|.|++|+|||||++.++.+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4678999999999999999999975
No 287
>PRK04296 thymidine kinase; Provisional
Probab=96.89 E-value=0.0021 Score=51.92 Aligned_cols=82 Identities=15% Similarity=0.097 Sum_probs=45.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCC---CCHHHHHHHHHHHHhc
Q 045699 171 DVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNICE---GSESERAMMLCGQLKK 247 (266)
Q Consensus 171 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~l~~~L~~ 247 (266)
.++.|.|+.|.||||++......... +-..+..+. ..++.......++.+++..... ....++...+.+ ..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~--~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~--~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEE--RGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE--EG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHH--cCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh--hC
Confidence 46788999999999999888877642 222333331 1112222233455566543322 223444444444 33
Q ss_pred CCeEEEEEeCC
Q 045699 248 GKKILFVLDNI 258 (266)
Q Consensus 248 ~kr~LlvlDDv 258 (266)
++.-+||+|++
T Consensus 77 ~~~dvviIDEa 87 (190)
T PRK04296 77 EKIDCVLIDEA 87 (190)
T ss_pred CCCCEEEEEcc
Confidence 14448889987
No 288
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.88 E-value=0.001 Score=53.16 Aligned_cols=26 Identities=23% Similarity=0.345 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
+..+|.|+|+.|+||||+++.+....
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998764
No 289
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=96.88 E-value=0.012 Score=52.06 Aligned_cols=27 Identities=30% Similarity=0.583 Sum_probs=23.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
..-.+++|+|++|+|||||.+.+..-.
T Consensus 65 ~~Gei~gLlGpNGaGKSTLl~~L~Gl~ 91 (340)
T PRK13536 65 ASGECFGLLGPNGAGKSTIARMILGMT 91 (340)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 356899999999999999999998764
No 290
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=96.87 E-value=0.01 Score=55.72 Aligned_cols=96 Identities=17% Similarity=0.206 Sum_probs=56.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhcccc---CCCe-EEEEEeCCCC--------CHHH-------------HHHHHH
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLK---VCDE-VVFVEVSRTP--------DVKR-------------IQGDVA 222 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~f~~-~~wv~v~~~~--------~~~~-------------~~~~i~ 222 (266)
..-.+++|+|++|+|||||++.+........ .|+. .-...++|.+ +..+ -..+++
T Consensus 343 ~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l 422 (530)
T PRK15064 343 EAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTL 422 (530)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHH
Confidence 3567999999999999999999987643211 1221 1011223221 1221 123344
Q ss_pred HHhcCC-------CCCCCHHHH-HHHHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699 223 DQLSLN-------ICEGSESER-AMMLCGQLKKGKKILFVLDNIWTSLDL 264 (266)
Q Consensus 223 ~~~~~~-------~~~~~~~~~-~~~l~~~L~~~kr~LlvlDDvw~~~~~ 264 (266)
..++.. ....|..+. .-.|...|.. +.-+|+||+..+.+|.
T Consensus 423 ~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~-~p~lllLDEPt~~LD~ 471 (530)
T PRK15064 423 GRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQ-KPNVLVMDEPTNHMDM 471 (530)
T ss_pred HHcCCChhHhcCcccccCHHHHHHHHHHHHHhc-CCCEEEEcCCCCCCCH
Confidence 555431 223454333 3445666776 8889999999998875
No 291
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=96.87 E-value=0.0088 Score=54.35 Aligned_cols=94 Identities=17% Similarity=0.265 Sum_probs=63.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhcccc--CCC---------eEEEEEeCCCCCHHHHHHHHHHHhc-CC-------
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLK--VCD---------EVVFVEVSRTPDVKRIQGDVADQLS-LN------- 228 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~--~f~---------~~~wv~v~~~~~~~~~~~~i~~~~~-~~------- 228 (266)
..-..++|+|-.|+|||||+..+.+...... ..| .++++.+++.....+.+...+..-+ ..
T Consensus 139 g~GQRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~a 218 (466)
T TIGR01040 139 ARGQKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLN 218 (466)
T ss_pred ccCCeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEE
Confidence 3567899999999999999999988764100 012 6788888888666676666666655 21
Q ss_pred -CCCCCHH-----HHHHHHHHHHh-c-CCeEEEEEeCCCCC
Q 045699 229 -ICEGSES-----ERAMMLCGQLK-K-GKKILFVLDNIWTS 261 (266)
Q Consensus 229 -~~~~~~~-----~~~~~l~~~L~-~-~kr~LlvlDDvw~~ 261 (266)
.+..... ..+..+.++++ + |++.||++||+...
T Consensus 219 tsd~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr~ 259 (466)
T TIGR01040 219 LANDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMSSY 259 (466)
T ss_pred CCCCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChHHH
Confidence 1111111 22345678887 3 69999999998653
No 292
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=96.87 E-value=0.0052 Score=55.67 Aligned_cols=90 Identities=21% Similarity=0.310 Sum_probs=55.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCC-CCCHHHHHHHHHHHhcCC-------CCCCCH-----
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSR-TPDVKRIQGDVADQLSLN-------ICEGSE----- 234 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~i~~~~~~~-------~~~~~~----- 234 (266)
..-..++|+|..|+|||||++.+....+. +..+...+.+ .....+++...+..-+.. ..+.+.
T Consensus 154 ~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~----~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~r 229 (432)
T PRK06793 154 GIGQKIGIFAGSGVGKSTLLGMIAKNAKA----DINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLR 229 (432)
T ss_pred cCCcEEEEECCCCCChHHHHHHHhccCCC----CeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHH
Confidence 35678999999999999999999886532 2222233433 355666666655543321 112221
Q ss_pred -HHHHHHHHHHHhc-CCeEEEEEeCCCCC
Q 045699 235 -SERAMMLCGQLKK-GKKILFVLDNIWTS 261 (266)
Q Consensus 235 -~~~~~~l~~~L~~-~kr~LlvlDDvw~~ 261 (266)
...+..+.+++++ |+..||++||+.+.
T Consensus 230 a~~~a~~iAEyfr~~G~~VLlilDslTr~ 258 (432)
T PRK06793 230 AAKLATSIAEYFRDQGNNVLLMMDSVTRF 258 (432)
T ss_pred HHHHHHHHHHHHHHcCCcEEEEecchHHH
Confidence 1223445566654 69999999998764
No 293
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=96.86 E-value=0.012 Score=52.22 Aligned_cols=27 Identities=30% Similarity=0.457 Sum_probs=23.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
..-.+++|+|++|+|||||.+.+..-.
T Consensus 30 ~~Ge~~~llGpsGsGKSTLLr~IaGl~ 56 (351)
T PRK11432 30 KQGTMVTLLGPSGCGKTTVLRLVAGLE 56 (351)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHCCC
Confidence 346799999999999999999997754
No 294
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.86 E-value=0.0065 Score=54.72 Aligned_cols=25 Identities=28% Similarity=0.282 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
..++.++|++|+||||++..+....
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999987654
No 295
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=96.86 E-value=0.011 Score=55.58 Aligned_cols=94 Identities=17% Similarity=0.137 Sum_probs=55.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhcccc-----------CC------CeEEEEEeCCCCC-------------HHHH
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLK-----------VC------DEVVFVEVSRTPD-------------VKRI 217 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~-----------~f------~~~~wv~v~~~~~-------------~~~~ 217 (266)
+....++|+|++|+|||||++.+........ .+ .... .++|++. ..+-
T Consensus 347 ~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~--~v~q~~~lf~~ti~~n~~~~~~~~ 424 (547)
T PRK10522 347 KRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFS--AVFTDFHLFDQLLGPEGKPANPAL 424 (547)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheE--EEecChhHHHHhhccccCchHHHH
Confidence 4578999999999999999999976532110 01 1111 2333221 1122
Q ss_pred HHHHHHHhcCCC-----------CCCCHHHHHH-HHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699 218 QGDVADQLSLNI-----------CEGSESERAM-MLCGQLKKGKKILFVLDNIWTSLDL 264 (266)
Q Consensus 218 ~~~i~~~~~~~~-----------~~~~~~~~~~-~l~~~L~~~kr~LlvlDDvw~~~~~ 264 (266)
..+.+++++... ...|..+.+. .+.+.+-. ++-+++||+..+..|.
T Consensus 425 ~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~-~~~ililDE~ts~LD~ 482 (547)
T PRK10522 425 VEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAE-ERDILLLDEWAADQDP 482 (547)
T ss_pred HHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEECCCCCCCH
Confidence 344555554421 1344444433 35666666 7889999999998774
No 296
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.85 E-value=0.011 Score=47.23 Aligned_cols=45 Identities=20% Similarity=0.192 Sum_probs=30.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHH
Q 045699 172 VIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGD 220 (266)
Q Consensus 172 vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~ 220 (266)
++.|.|++|+|||+|+..+..... ..=..++|++...+ ..++.+.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~--~~g~~v~~~s~e~~--~~~~~~~ 45 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGL--ARGEPGLYVTLEES--PEELIEN 45 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH--HCCCcEEEEECCCC--HHHHHHH
Confidence 367899999999999998866543 12245778876543 4444433
No 297
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.85 E-value=0.0084 Score=58.49 Aligned_cols=47 Identities=23% Similarity=0.279 Sum_probs=33.6
Q ss_pred ccccchHHHHHHHHHHhC----C---------CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 149 EAFESRKSILNDALDALS----N---------PNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 149 ~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
.++.|.+..++.|.+.+. . ...+-+.++|+.|+|||+||+.+.+...
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~ 512 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESG 512 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC
Confidence 445677776666655432 1 1234588999999999999999999764
No 298
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.85 E-value=0.0057 Score=50.45 Aligned_cols=47 Identities=15% Similarity=0.144 Sum_probs=39.4
Q ss_pred cccccchHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 148 YEAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 148 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
..+++|-++.++.+.-...+.+...+.|.||+|+||||-+..+.+..
T Consensus 26 l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~L 72 (333)
T KOG0991|consen 26 LQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLAREL 72 (333)
T ss_pred HHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHH
Confidence 45688988888888776678889999999999999999888777764
No 299
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.85 E-value=0.0092 Score=49.07 Aligned_cols=24 Identities=33% Similarity=0.397 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 172 VIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 172 vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
.|.|+|++|+||||+|+.+.....
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~ 25 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYG 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999987653
No 300
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.12 Score=50.10 Aligned_cols=102 Identities=18% Similarity=0.211 Sum_probs=57.9
Q ss_pred cccchHHHHHHHHHHhC-------C--CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHH
Q 045699 150 AFESRKSILNDALDALS-------N--PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGD 220 (266)
Q Consensus 150 ~~~gr~~~~~~l~~~l~-------~--~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~ 220 (266)
.++|.+..++.+.+.+. + ..+.+...+|+.|+|||-||+.+....- +.-+..+-+ |+.+.+..
T Consensus 492 rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lf--g~e~aliR~------DMSEy~Ek 563 (786)
T COG0542 492 RVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALF--GDEQALIRI------DMSEYMEK 563 (786)
T ss_pred ceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhc--CCCccceee------chHHHHHH
Confidence 46777887777776652 2 2356788899999999999999988642 100222322 33333322
Q ss_pred --HHHHhcCCCCCCCHHHHHHHHHHHHhcCCeE-EEEEeCCCCC
Q 045699 221 --VADQLSLNICEGSESERAMMLCGQLKKGKKI-LFVLDNIWTS 261 (266)
Q Consensus 221 --i~~~~~~~~~~~~~~~~~~~l~~~L~~~kr~-LlvlDDvw~~ 261 (266)
+.+-+|.+..--.-++ -..|-+..+. |.| +|+||+|...
T Consensus 564 HsVSrLIGaPPGYVGyee-GG~LTEaVRr-~PySViLlDEIEKA 605 (786)
T COG0542 564 HSVSRLIGAPPGYVGYEE-GGQLTEAVRR-KPYSVILLDEIEKA 605 (786)
T ss_pred HHHHHHhCCCCCCceecc-ccchhHhhhc-CCCeEEEechhhhc
Confidence 2222333211000011 2345566676 877 7779988653
No 301
>PRK14527 adenylate kinase; Provisional
Probab=96.84 E-value=0.0034 Score=50.66 Aligned_cols=28 Identities=25% Similarity=0.288 Sum_probs=24.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
....+|.|+|++|+||||+|+.+.+...
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELG 31 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3567899999999999999999987654
No 302
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=96.84 E-value=0.0024 Score=56.19 Aligned_cols=48 Identities=17% Similarity=0.256 Sum_probs=40.4
Q ss_pred CcccccchHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 147 GYEAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 147 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
|...++|.+..+..|+-.+.++...-+.|.|..|+|||||++.+..-.
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred CccccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 345688999999888777777778888899999999999999997654
No 303
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.84 E-value=0.0012 Score=54.07 Aligned_cols=28 Identities=43% Similarity=0.580 Sum_probs=25.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhcc
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAKK 196 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 196 (266)
+..+|||-|.+|+||||+|+.+++....
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~~ 34 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLGV 34 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhCc
Confidence 4579999999999999999999998763
No 304
>PLN03073 ABC transporter F family; Provisional
Probab=96.84 E-value=0.01 Score=57.52 Aligned_cols=94 Identities=19% Similarity=0.270 Sum_probs=55.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhcccc---CCC---eEEEEEeCCCC----CH----------------HHHHHHH
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLK---VCD---EVVFVEVSRTP----DV----------------KRIQGDV 221 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~f~---~~~wv~v~~~~----~~----------------~~~~~~i 221 (266)
..-.+++|+|++|+|||||++.+........ .++ .+.| ++|.+ +. .+-...+
T Consensus 533 ~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igy--v~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 610 (718)
T PLN03073 533 DLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAV--FSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAH 610 (718)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEE--EeccccccCCcchhHHHHHHHhcCCCCHHHHHHH
Confidence 3567999999999999999999987643211 011 1112 22211 00 1112344
Q ss_pred HHHhcCC-------CCCCCHHHHH-HHHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699 222 ADQLSLN-------ICEGSESERA-MMLCGQLKKGKKILFVLDNIWTSLDL 264 (266)
Q Consensus 222 ~~~~~~~-------~~~~~~~~~~-~~l~~~L~~~kr~LlvlDDvw~~~~~ 264 (266)
+..++.. ....|..+.. -.|...|-. +.-+|+||++.+.+|.
T Consensus 611 L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~-~p~lLLLDEPT~~LD~ 660 (718)
T PLN03073 611 LGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK-KPHILLLDEPSNHLDL 660 (718)
T ss_pred HHHCCCChHHhcCCccccCHHHHHHHHHHHHHhc-CCCEEEEcCCCCCCCH
Confidence 5555542 2234544443 345666666 8889999999998874
No 305
>PRK06217 hypothetical protein; Validated
Probab=96.83 E-value=0.0033 Score=50.32 Aligned_cols=36 Identities=22% Similarity=0.335 Sum_probs=27.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhccccCC--CeEEEEE
Q 045699 171 DVIGLCGVGGIGKTTLAKIVCDQAKKLKVC--DEVVFVE 207 (266)
Q Consensus 171 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f--~~~~wv~ 207 (266)
..|.|.|++|+||||+|+.+....... +| |...|..
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~~~-~~~~D~~~~~~ 39 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLDIP-HLDTDDYFWLP 39 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCc-EEEcCceeecc
Confidence 358999999999999999999886542 33 4556643
No 306
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=96.82 E-value=0.011 Score=52.53 Aligned_cols=27 Identities=33% Similarity=0.540 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
.-.+++|+|++|+|||||.+.+..-..
T Consensus 29 ~Ge~~~l~GpsGsGKSTLLr~iaGl~~ 55 (353)
T TIGR03265 29 KGEFVCLLGPSGCGKTTLLRIIAGLER 55 (353)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Confidence 467999999999999999999987643
No 307
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.82 E-value=0.0049 Score=56.03 Aligned_cols=25 Identities=32% Similarity=0.432 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
.+++.++|++|+||||++..+....
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~ 245 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARY 245 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4699999999999999888776654
No 308
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.82 E-value=0.0074 Score=54.48 Aligned_cols=89 Identities=20% Similarity=0.236 Sum_probs=51.0
Q ss_pred hHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCC
Q 045699 154 RKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNICEGS 233 (266)
Q Consensus 154 r~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~~~ 233 (266)
+......+.+.+..... ++.|.|+-++|||||++.+...... ..+++..........-+.
T Consensus 22 ~~~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~-----~~iy~~~~d~~~~~~~l~-------------- 81 (398)
T COG1373 22 RRKLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLLE-----EIIYINFDDLRLDRIELL-------------- 81 (398)
T ss_pred HHhhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCCc-----ceEEEEecchhcchhhHH--------------
Confidence 33444555555543333 9999999999999999777665431 145554332211111001
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEeCCCCCCCCC
Q 045699 234 ESERAMMLCGQLKKGKKILFVLDNIWTSLDLE 265 (266)
Q Consensus 234 ~~~~~~~l~~~L~~~kr~LlvlDDvw~~~~~~ 265 (266)
+....+...-.. ++.+|+||+|.+..+|+
T Consensus 82 --d~~~~~~~~~~~-~~~yifLDEIq~v~~W~ 110 (398)
T COG1373 82 --DLLRAYIELKER-EKSYIFLDEIQNVPDWE 110 (398)
T ss_pred --HHHHHHHHhhcc-CCceEEEecccCchhHH
Confidence 111122222222 66899999999998885
No 309
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=96.81 E-value=0.014 Score=54.14 Aligned_cols=96 Identities=15% Similarity=0.253 Sum_probs=54.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhcccc---CCCe-EEEEEe----CCCCCHHH------------------HHHHH
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLK---VCDE-VVFVEV----SRTPDVKR------------------IQGDV 221 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~f~~-~~wv~v----~~~~~~~~------------------~~~~i 221 (266)
....+++|+|++|+|||||++.+........ .++. ...+.. ....+..+ ....+
T Consensus 48 ~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~el 127 (549)
T PRK13545 48 PEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEI 127 (549)
T ss_pred eCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeeeEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHH
Confidence 3567999999999999999999988643211 0111 001111 11111111 11233
Q ss_pred HHHhcC------CCCCCCHHHHH-HHHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699 222 ADQLSL------NICEGSESERA-MMLCGQLKKGKKILFVLDNIWTSLDL 264 (266)
Q Consensus 222 ~~~~~~------~~~~~~~~~~~-~~l~~~L~~~kr~LlvlDDvw~~~~~ 264 (266)
++.++. .....|..+.. -.|...|.. ..-+|+||++.+.+|.
T Consensus 128 Le~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~-~P~LLLLDEPTsgLD~ 176 (549)
T PRK13545 128 IEFADIGKFIYQPVKTYSSGMKSRLGFAISVHI-NPDILVIDEALSVGDQ 176 (549)
T ss_pred HHHcCChhHhhCCcccCCHHHHHHHHHHHHHHh-CCCEEEEECCcccCCH
Confidence 444443 12344544443 346666766 7889999999988764
No 310
>PRK10536 hypothetical protein; Provisional
Probab=96.80 E-value=0.0084 Score=50.48 Aligned_cols=55 Identities=22% Similarity=0.234 Sum_probs=40.2
Q ss_pred cccccchHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEE
Q 045699 148 YEAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVV 204 (266)
Q Consensus 148 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~ 204 (266)
...+.++......++.++.+ ...+.+.|+.|+|||+||..+..+.-..+.|+..+
T Consensus 54 ~~~i~p~n~~Q~~~l~al~~--~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIi 108 (262)
T PRK10536 54 TSPILARNEAQAHYLKAIES--KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRII 108 (262)
T ss_pred CccccCCCHHHHHHHHHHhc--CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEE
Confidence 44567777777888888765 35999999999999999999988632223444443
No 311
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.0059 Score=57.70 Aligned_cols=75 Identities=25% Similarity=0.228 Sum_probs=50.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCC--CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHh
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTP--DVKRIQGDVADQLSLNICEGSESERAMMLCGQLK 246 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~L~ 246 (266)
..+-|-|.|+.|+|||+|++.+++... +++.-++.+++++.-. ..+.+++.+ ...+...+.
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l----------------~~vfse~~~ 492 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFL----------------NNVFSEALW 492 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHH----------------HHHHHHHHh
Confidence 346788999999999999999999876 3444455666666422 233333222 223345566
Q ss_pred cCCeEEEEEeCCCCC
Q 045699 247 KGKKILFVLDNIWTS 261 (266)
Q Consensus 247 ~~kr~LlvlDDvw~~ 261 (266)
- ..-+|||||+...
T Consensus 493 ~-~PSiIvLDdld~l 506 (952)
T KOG0735|consen 493 Y-APSIIVLDDLDCL 506 (952)
T ss_pred h-CCcEEEEcchhhh
Confidence 5 7889999998643
No 312
>PRK12678 transcription termination factor Rho; Provisional
Probab=96.80 E-value=0.0065 Score=56.59 Aligned_cols=88 Identities=18% Similarity=0.166 Sum_probs=53.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEE-EEEeCCCCCHHHHHHHHHHHhcC-----CCCCCC-----HHH
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVV-FVEVSRTPDVKRIQGDVADQLSL-----NICEGS-----ESE 236 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~-wv~v~~~~~~~~~~~~i~~~~~~-----~~~~~~-----~~~ 236 (266)
..-...+|+|+.|+|||||++.|.+.... .+-++.+ .+-|.+-.... .++-..+.. ..+... ..+
T Consensus 414 GkGQR~LIvgpp~aGKTtLL~~IAn~i~~-n~~~~~~ivvLIgERpeEV---tdm~rsVkgeVVasT~D~p~~~~~~~a~ 489 (672)
T PRK12678 414 GKGQRGLIVSPPKAGKTTILQNIANAITT-NNPECHLMVVLVDERPEEV---TDMQRSVKGEVIASTFDRPPSDHTTVAE 489 (672)
T ss_pred ccCCEeEEeCCCCCCHHHHHHHHHHHHhh-cCCCeEEEEEEEeCchhhH---HHHHHhccceEEEECCCCCHHHHHHHHH
Confidence 35678999999999999999999997642 2334444 44555443222 222333311 112211 223
Q ss_pred HHHHHHHHHhc-CCeEEEEEeCCC
Q 045699 237 RAMMLCGQLKK-GKKILFVLDNIW 259 (266)
Q Consensus 237 ~~~~l~~~L~~-~kr~LlvlDDvw 259 (266)
+...+.++|.+ |+..||+||++.
T Consensus 490 ~ai~~Ae~fre~G~dVlillDSlT 513 (672)
T PRK12678 490 LAIERAKRLVELGKDVVVLLDSIT 513 (672)
T ss_pred HHHHHHHHHHHcCCCEEEEEeCch
Confidence 44455666643 699999999986
No 313
>PRK03839 putative kinase; Provisional
Probab=96.79 E-value=0.0013 Score=52.52 Aligned_cols=24 Identities=33% Similarity=0.729 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 172 VIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 172 vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
.|.|+|+.|+||||+++.+.+...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999999864
No 314
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.79 E-value=0.0093 Score=52.26 Aligned_cols=27 Identities=26% Similarity=0.471 Sum_probs=23.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
.+-..+.++|++|||||||.+.|..-.
T Consensus 27 ~~Gef~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 27 EDGEFVVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 346789999999999999999997654
No 315
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=96.79 E-value=0.012 Score=52.68 Aligned_cols=26 Identities=27% Similarity=0.533 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
.-.+++|+|++|+|||||.+.+..-.
T Consensus 44 ~Ge~~~llGpsGsGKSTLLr~IaGl~ 69 (377)
T PRK11607 44 KGEIFALLGASGCGKSTLLRMLAGFE 69 (377)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45799999999999999999998654
No 316
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=96.79 E-value=0.015 Score=46.33 Aligned_cols=92 Identities=22% Similarity=0.376 Sum_probs=54.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEE----------------------------eCCC--------
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVE----------------------------VSRT-------- 211 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~----------------------------v~~~-------- 211 (266)
..-.+++|+|++|.||+||...|..=.. .-...+|++ |.++
T Consensus 23 ~~ge~vAi~GpSGaGKSTLLnLIAGF~~---P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~ 99 (231)
T COG3840 23 PAGEIVAILGPSGAGKSTLLNLIAGFET---PASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPG 99 (231)
T ss_pred cCCcEEEEECCCCccHHHHHHHHHhccC---CCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCcc
Confidence 3567999999999999999999965321 112344541 1111
Q ss_pred CC----HHHHHHHHHHHhcCC------CCCCCHHHHH-HHHHHHHhcCCeEEEEEeCCCCCCC
Q 045699 212 PD----VKRIQGDVADQLSLN------ICEGSESERA-MMLCGQLKKGKKILFVLDNIWTSLD 263 (266)
Q Consensus 212 ~~----~~~~~~~i~~~~~~~------~~~~~~~~~~-~~l~~~L~~~kr~LlvlDDvw~~~~ 263 (266)
.. -.+-...++.+.|.. ....|..+.+ ..|.++|-. .+-++.||+..+..|
T Consensus 100 LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR-~~PilLLDEPFsALd 161 (231)
T COG3840 100 LKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVR-EQPILLLDEPFSALD 161 (231)
T ss_pred cccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhc-cCCeEEecCchhhcC
Confidence 01 123344566666652 1234433333 346666666 677888999888765
No 317
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.78 E-value=0.012 Score=55.65 Aligned_cols=49 Identities=18% Similarity=0.374 Sum_probs=40.9
Q ss_pred CcccccchHHHHHHHHHHhCCCCCc-EEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 147 GYEAFESRKSILNDALDALSNPNVD-VIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 147 ~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
...+++|.+..++.|.+++...++. .+.++|+.|+||||+|+.+.+...
T Consensus 14 ~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~ 63 (576)
T PRK14965 14 TFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALN 63 (576)
T ss_pred CHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhc
Confidence 4667899999999999988766664 468999999999999999987753
No 318
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.78 E-value=0.006 Score=59.43 Aligned_cols=44 Identities=25% Similarity=0.437 Sum_probs=32.9
Q ss_pred ccchHHHHHHHHHHhC-------CC--CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 151 FESRKSILNDALDALS-------NP--NVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 151 ~~gr~~~~~~l~~~l~-------~~--~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
++|.+..++.+.+.+. ++ ...++.++|+.|+|||+||+.+....
T Consensus 456 v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l 508 (731)
T TIGR02639 456 IFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL 508 (731)
T ss_pred eeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh
Confidence 5676777777766553 11 23468899999999999999998865
No 319
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.0073 Score=56.21 Aligned_cols=72 Identities=25% Similarity=0.287 Sum_probs=43.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCC
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNICEGSESERAMMLCGQLKKGK 249 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~L~~~k 249 (266)
..=|.+||+.|||||-||+.|.|..+.. |++|-.+ +++..- -+.++........+.-.. -
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~N-------FisVKGP----ELlNkY--------VGESErAVR~vFqRAR~s-a 604 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGAN-------FISVKGP----ELLNKY--------VGESERAVRQVFQRARAS-A 604 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCc-------eEeecCH----HHHHHH--------hhhHHHHHHHHHHHhhcC-C
Confidence 4567899999999999999999987632 3444332 222211 122222222223333334 8
Q ss_pred eEEEEEeCCCCC
Q 045699 250 KILFVLDNIWTS 261 (266)
Q Consensus 250 r~LlvlDDvw~~ 261 (266)
.|+|++|++...
T Consensus 605 PCVIFFDEiDaL 616 (802)
T KOG0733|consen 605 PCVIFFDEIDAL 616 (802)
T ss_pred CeEEEecchhhc
Confidence 899999998653
No 320
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=96.77 E-value=0.012 Score=52.37 Aligned_cols=26 Identities=31% Similarity=0.496 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
.-.+++|+|++|+|||||.+.+..-.
T Consensus 30 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 55 (362)
T TIGR03258 30 AGELLALIGKSGCGKTTLLRAIAGFV 55 (362)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45789999999999999999998753
No 321
>PRK06820 type III secretion system ATPase; Validated
Probab=96.77 E-value=0.0075 Score=54.79 Aligned_cols=90 Identities=20% Similarity=0.357 Sum_probs=53.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCC-HHHHHHHHHHHhcC-------CCCCCC-HH---
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPD-VKRIQGDVADQLSL-------NICEGS-ES--- 235 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~-~~~~~~~i~~~~~~-------~~~~~~-~~--- 235 (266)
..-..++|+|.+|+|||||++.+.... +-+..+...+..... ..++....+..-.. ...+.+ ..
T Consensus 161 ~~Gqri~I~G~sG~GKStLl~~I~~~~----~~dv~V~~~iGergrEv~ef~e~~l~~~~~~rtvvv~atsd~p~~~r~~ 236 (440)
T PRK06820 161 GEGQRIGIFAAAGVGKSTLLGMLCADS----AADVMVLALIGERGREVREFLEQVLTPEARARTVVVVATSDRPALERLK 236 (440)
T ss_pred cCCCEEEEECCCCCChHHHHHHHhccC----CCCEEEEEEEccChHHHHHHHHHhhccCCceeEEEEEeCCCCCHHHHHH
Confidence 345789999999999999999888753 234555666665522 22222222211000 111111 11
Q ss_pred --HHHHHHHHHHhc-CCeEEEEEeCCCCC
Q 045699 236 --ERAMMLCGQLKK-GKKILFVLDNIWTS 261 (266)
Q Consensus 236 --~~~~~l~~~L~~-~kr~LlvlDDvw~~ 261 (266)
..+..+.+++++ |+..||++||+...
T Consensus 237 a~~~a~tiAEyfrd~G~~VLl~~Dsltr~ 265 (440)
T PRK06820 237 GLSTATTIAEYFRDRGKKVLLMADSLTRY 265 (440)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEccchhHH
Confidence 123456677754 69999999998653
No 322
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.77 E-value=0.007 Score=57.48 Aligned_cols=27 Identities=33% Similarity=0.441 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
+....++|+|..|+|||||++.+..-.
T Consensus 374 ~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 374 PAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999999996654
No 323
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=96.77 E-value=0.0024 Score=56.29 Aligned_cols=50 Identities=16% Similarity=0.242 Sum_probs=42.9
Q ss_pred CCcccccchHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 146 EGYEAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 146 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
.|...++|.+..+..|+..+.++.+.-+.|.|..|+||||+|+.+++-..
T Consensus 14 ~pf~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~ 63 (350)
T CHL00081 14 FPFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLP 63 (350)
T ss_pred CCHHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHh
Confidence 35677899999999998887788888788999999999999999977643
No 324
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=96.77 E-value=0.01 Score=57.73 Aligned_cols=28 Identities=29% Similarity=0.455 Sum_probs=24.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
+....++|+|+.|+|||||++.+..-..
T Consensus 505 ~~Ge~vaIvG~SGsGKSTLl~lL~gl~~ 532 (711)
T TIGR00958 505 HPGEVVALVGPSGSGKSTVAALLQNLYQ 532 (711)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 4678999999999999999999977643
No 325
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=96.76 E-value=0.0093 Score=53.91 Aligned_cols=89 Identities=19% Similarity=0.288 Sum_probs=53.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCC-CHHHHHHHHHHHhcC--------CCCCCCHH---
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTP-DVKRIQGDVADQLSL--------NICEGSES--- 235 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~i~~~~~~--------~~~~~~~~--- 235 (266)
..-..++|+|..|+|||||++.+.+..+ -+..+...+.+.. ...++..+.+.+-+. ..+.....
T Consensus 135 ~~Gqri~I~G~sG~GKTtLl~~i~~~~~----~~~gvi~~~Ger~~ev~e~~~~~l~~~~~~~~v~v~~tsd~~~~~r~~ 210 (413)
T TIGR03497 135 GKGQRVGIFAGSGVGKSTLLGMIARNAK----ADINVIALIGERGREVRDFIEKDLGEEGLKRSVVVVATSDQPALMRLK 210 (413)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC----CCeEEEEEEccchHHHHHHHHHHhcccccceEEEEEECCCCCHHHHHH
Confidence 4568999999999999999998887543 2333334444433 344454444433211 11111111
Q ss_pred --HHHHHHHHHHhc-CCeEEEEEeCCCC
Q 045699 236 --ERAMMLCGQLKK-GKKILFVLDNIWT 260 (266)
Q Consensus 236 --~~~~~l~~~L~~-~kr~LlvlDDvw~ 260 (266)
..+..+.+++++ |+..||++||+..
T Consensus 211 ~~~~a~tiAEyfr~~G~~Vll~~Dsltr 238 (413)
T TIGR03497 211 AAFTATAIAEYFRDQGKDVLLMMDSVTR 238 (413)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEcCcHH
Confidence 233456677754 6999999999864
No 326
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.76 E-value=0.0032 Score=61.50 Aligned_cols=47 Identities=19% Similarity=0.320 Sum_probs=39.1
Q ss_pred ccccchHHHHHHHHHHhC------CCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 149 EAFESRKSILNDALDALS------NPNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 149 ~~~~gr~~~~~~l~~~l~------~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
.+..|.+..++.|+++|. .....++.++|+.|+||||+++.+.....
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~ 374 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATG 374 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 446889999999998874 23467899999999999999999998754
No 327
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=96.76 E-value=0.011 Score=53.98 Aligned_cols=89 Identities=13% Similarity=0.275 Sum_probs=51.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCC-CCCHHHHHHHHHHH------hcC-CCCCCC-H----
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSR-TPDVKRIQGDVADQ------LSL-NICEGS-E---- 234 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~i~~~------~~~-~~~~~~-~---- 234 (266)
.....++|+|..|+|||||++.+.+.... +.....-+.+ .-+..++..+.+.. +.. ...+.+ .
T Consensus 156 ~~Gq~i~I~G~sG~GKStLl~~I~~~~~~----~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~~~~~r~~ 231 (438)
T PRK07721 156 GKGQRVGIFAGSGVGKSTLMGMIARNTSA----DLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQPALMRIK 231 (438)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcccCC----CeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCCCHHHHHH
Confidence 45789999999999999999998875432 2222223332 22344443332211 110 111111 1
Q ss_pred -HHHHHHHHHHHhc-CCeEEEEEeCCCC
Q 045699 235 -SERAMMLCGQLKK-GKKILFVLDNIWT 260 (266)
Q Consensus 235 -~~~~~~l~~~L~~-~kr~LlvlDDvw~ 260 (266)
...+..+.+++++ |++.||++||+..
T Consensus 232 ~~~~a~~iAEyfr~~g~~Vll~~Dsltr 259 (438)
T PRK07721 232 GAYTATAIAEYFRDQGLNVMLMMDSVTR 259 (438)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeChHH
Confidence 1234446677754 6999999999864
No 328
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=96.75 E-value=0.012 Score=53.48 Aligned_cols=89 Identities=18% Similarity=0.304 Sum_probs=54.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCC-CCHHHHHHHHHHHhcC-------CCCCCCHH----
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRT-PDVKRIQGDVADQLSL-------NICEGSES---- 235 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~-~~~~~~~~~i~~~~~~-------~~~~~~~~---- 235 (266)
..-..++|+|.+|+|||||.+.+.+... .+..+.+.+... ....++..+....... .....+..
T Consensus 143 ~~Gq~~~I~G~sG~GKStLl~~I~~~~~----~~~~vi~~iG~~~~ev~~~~~~~~~~~~~~~tvvv~~~s~~p~~~r~~ 218 (422)
T TIGR02546 143 GEGQRIGIFAGAGVGKSTLLGMIARGAS----ADVNVIALIGERGREVREFIEHHLGEEGRKRSVLVVSTSDRPSLERLK 218 (422)
T ss_pred cCCCEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEccCCcCHHHHHHHHhccccccceEEEeccccCCHHHHHH
Confidence 4567889999999999999999998643 344555555543 3444554444432211 11111111
Q ss_pred --HHHHHHHHHHhc-CCeEEEEEeCCCC
Q 045699 236 --ERAMMLCGQLKK-GKKILFVLDNIWT 260 (266)
Q Consensus 236 --~~~~~l~~~L~~-~kr~LlvlDDvw~ 260 (266)
.....+.+++.+ |++.|+++|++..
T Consensus 219 ~~~~a~~~AE~f~~~g~~Vl~~~Dsltr 246 (422)
T TIGR02546 219 AAYTATAIAEYFRDQGKRVLLMMDSLTR 246 (422)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeCchH
Confidence 223345566643 5899999999874
No 329
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.75 E-value=0.0016 Score=49.94 Aligned_cols=39 Identities=23% Similarity=0.283 Sum_probs=28.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCC
Q 045699 171 DVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSR 210 (266)
Q Consensus 171 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~ 210 (266)
++|.|+|..|+|||||++.+.+....+ .+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~-g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRR-GYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHc-CCceEEEEEccC
Confidence 479999999999999999999997633 344444555555
No 330
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.75 E-value=0.025 Score=46.12 Aligned_cols=25 Identities=36% Similarity=0.554 Sum_probs=22.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHH
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCD 192 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~ 192 (266)
+.-.|.++.|++|||||||.+.+..
T Consensus 31 ~~~~VTAlIGPSGcGKST~LR~lNR 55 (253)
T COG1117 31 PKNKVTALIGPSGCGKSTLLRCLNR 55 (253)
T ss_pred cCCceEEEECCCCcCHHHHHHHHHh
Confidence 5678999999999999999998844
No 331
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.74 E-value=0.0079 Score=59.53 Aligned_cols=45 Identities=20% Similarity=0.360 Sum_probs=34.1
Q ss_pred cccchHHHHHHHHHHhC-------CC--CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 150 AFESRKSILNDALDALS-------NP--NVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 150 ~~~gr~~~~~~l~~~l~-------~~--~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
.++|.+..++.+...+. ++ ...++.++|+.|+|||+||+.+.+..
T Consensus 569 ~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l 622 (857)
T PRK10865 569 RVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM 622 (857)
T ss_pred eEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 46787777777766553 11 23578899999999999999999865
No 332
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=96.74 E-value=0.016 Score=56.16 Aligned_cols=27 Identities=22% Similarity=0.426 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
+....++|+|..|+|||||++.+..-.
T Consensus 477 ~~Ge~vaIvG~sGsGKSTLlklL~gl~ 503 (686)
T TIGR03797 477 EPGEFVAIVGPSGSGKSTLLRLLLGFE 503 (686)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999996654
No 333
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.73 E-value=0.0013 Score=52.42 Aligned_cols=23 Identities=35% Similarity=0.599 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 045699 171 DVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 171 ~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
++|.|+|+.|+|||||++.+...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHcc
Confidence 57999999999999999999885
No 334
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=96.72 E-value=0.021 Score=45.84 Aligned_cols=36 Identities=22% Similarity=0.261 Sum_probs=27.8
Q ss_pred HHHHHhCCCCC-cEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 160 DALDALSNPNV-DVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 160 ~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
.|.+.+...++ ..+.++|+.|+||||+|+.+.....
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~ 39 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALL 39 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHc
Confidence 34455555555 6789999999999999999988754
No 335
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.72 E-value=0.005 Score=58.27 Aligned_cols=52 Identities=29% Similarity=0.485 Sum_probs=39.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQL 225 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~ 225 (266)
.-++..++|++|+||||||..|..+... .++=++.|..-+...+-..|...+
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqaGY-----sVvEINASDeRt~~~v~~kI~~av 376 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQAGY-----SVVEINASDERTAPMVKEKIENAV 376 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhcCc-----eEEEecccccccHHHHHHHHHHHH
Confidence 4579999999999999999999987541 355677777776666666655544
No 336
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.72 E-value=0.0015 Score=52.05 Aligned_cols=25 Identities=28% Similarity=0.357 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 171 DVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 171 ~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
.++.|+|+.|+|||||++.+.....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999977643
No 337
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.0081 Score=55.56 Aligned_cols=96 Identities=22% Similarity=0.202 Sum_probs=57.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccc-----------------cCCCeEEEEEeCCC----------------CCH
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKL-----------------KVCDEVVFVEVSRT----------------PDV 214 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~-----------------~~f~~~~wv~v~~~----------------~~~ 214 (266)
...+.++|||.+|+|||||...+..-.+.. ..+..+.||.=... .+.
T Consensus 345 ~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~ 424 (559)
T COG4988 345 KAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASD 424 (559)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCH
Confidence 456899999999999999999996654311 11234566622211 111
Q ss_pred HHHHHHHHHHhcC----------------CCCCCCHHHHHH-HHHHHHhcCCeEEEEEeCCCCCCCCC
Q 045699 215 KRIQGDVADQLSL----------------NICEGSESERAM-MLCGQLKKGKKILFVLDNIWTSLDLE 265 (266)
Q Consensus 215 ~~~~~~i~~~~~~----------------~~~~~~~~~~~~-~l~~~L~~~kr~LlvlDDvw~~~~~~ 265 (266)
+++ .+.+++.+. .-...|..+.++ .|.+.|-+ ++-++++|+.....|.|
T Consensus 425 e~i-~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~-~~~l~llDEpTA~LD~e 490 (559)
T COG4988 425 EEI-IAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLS-PASLLLLDEPTAHLDAE 490 (559)
T ss_pred HHH-HHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcC-CCCEEEecCCccCCCHh
Confidence 222 233333322 111245444433 35666766 89999999999998865
No 338
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.71 E-value=0.0069 Score=58.44 Aligned_cols=27 Identities=30% Similarity=0.492 Sum_probs=23.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
+.-..|+|+|.+|+|||||+|.+..-.
T Consensus 497 ~~Ge~vaIvG~SGsGKSTL~KLL~gly 523 (709)
T COG2274 497 PPGEKVAIVGRSGSGKSTLLKLLLGLY 523 (709)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 567899999999999999999996543
No 339
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=96.71 E-value=0.015 Score=54.90 Aligned_cols=94 Identities=22% Similarity=0.356 Sum_probs=55.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhcccc---CCC---eEEEEEeCCCC-------CHHH----------------HH
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLK---VCD---EVVFVEVSRTP-------DVKR----------------IQ 218 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~f~---~~~wv~v~~~~-------~~~~----------------~~ 218 (266)
....+++|+|++|+|||||++.+........ .++ .+.++ +|.+ +..+ -.
T Consensus 346 ~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~~v--~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~ 423 (552)
T TIGR03719 346 PPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYV--DQSRDALDPNKTVWEEISGGLDIIQLGKREVPS 423 (552)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEEEE--eCCccccCCCCcHHHHHHhhccccccCcchHHH
Confidence 3567999999999999999999987643111 111 12222 2221 1111 12
Q ss_pred HHHHHHhcCC-------CCCCCHHHH-HHHHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699 219 GDVADQLSLN-------ICEGSESER-AMMLCGQLKKGKKILFVLDNIWTSLDL 264 (266)
Q Consensus 219 ~~i~~~~~~~-------~~~~~~~~~-~~~l~~~L~~~kr~LlvlDDvw~~~~~ 264 (266)
..++..++.. ....|..+. .-.+...|.. +.-+++||++.+..|.
T Consensus 424 ~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~-~p~lllLDEPt~~LD~ 476 (552)
T TIGR03719 424 RAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKS-GGNVLLLDEPTNDLDV 476 (552)
T ss_pred HHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhh-CCCEEEEeCCCCCCCH
Confidence 2455555542 123454333 3345666666 8889999999998875
No 340
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.70 E-value=0.0013 Score=53.55 Aligned_cols=24 Identities=17% Similarity=0.093 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
..++.|.|++|+|||||.+.+...
T Consensus 29 ~~~~~l~G~Ng~GKStll~~i~~~ 52 (202)
T cd03243 29 GRLLLITGPNMGGKSTYLRSIGLA 52 (202)
T ss_pred CeEEEEECCCCCccHHHHHHHHHH
Confidence 379999999999999999999843
No 341
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=96.69 E-value=0.017 Score=49.51 Aligned_cols=99 Identities=13% Similarity=0.179 Sum_probs=55.5
Q ss_pred hHHHHHHHHhhhhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHhhhHHHH
Q 045699 8 IPAKVLGQLVGTIPGQLRNYKSNFADLKKKTEKLKLTIEDLQLWVDAAKENGEEIEQSVERWLISANTTVVEAGKLIEDE 87 (266)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~el~~l~~~l~~i~~~l~~ae~~~~~~~~~~~~Wl~~vr~~a~d~ed~ld~~ 87 (266)
++.+.+..+.+..+..+...+++++-++.++++|+.||+.+ +++.... -+....+..++...||++|.++|.
T Consensus 300 FlL~NLkdfq~rysdSlaflKnQiqvIQ~elesLqpFLk~V------~ee~~nk-h~~~ed~a~~ii~kAyevEYVVDa- 371 (402)
T PF12061_consen 300 FLLKNLKDFQGRYSDSLAFLKNQIQVIQTELESLQPFLKHV------VEEPHNK-HDTNEDCATQIIRKAYEVEYVVDA- 371 (402)
T ss_pred HHHhhHHHHhccccchHHHHHHHHHHHHHHHHHhhHHHHHH------Hhccchh-hhhhhhHHHHHHHHHhheeeeeeh-
Confidence 33333344444444334455555555555555555555543 2332233 334899999999999999999996
Q ss_pred HHhhcccccCCCCChhHHh---HHHHHHHHHHHHHH
Q 045699 88 EKEKKKCLKGLCPNLMNRY---QLSKKAAWEVKAIA 120 (266)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~i~ 120 (266)
|.....|.++.-. .+...|..++++|+
T Consensus 372 ------Ci~k~~P~Wcl~~WL~dIieei~~ik~~i~ 401 (402)
T PF12061_consen 372 ------CISKSVPHWCLERWLLDIIEEITCIKAKIQ 401 (402)
T ss_pred ------hhcCCCcHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5544455444332 34444444555443
No 342
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.69 E-value=0.0026 Score=49.32 Aligned_cols=28 Identities=29% Similarity=0.386 Sum_probs=24.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhccc
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQAKKL 197 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~ 197 (266)
..-|.|.||+|+||||+++.+.+..+.+
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~ 32 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREK 32 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhc
Confidence 4578999999999999999999887644
No 343
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.68 E-value=0.012 Score=52.40 Aligned_cols=57 Identities=28% Similarity=0.271 Sum_probs=34.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCC-CCHHHHHHHHHHHhcC
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRT-PDVKRIQGDVADQLSL 227 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~-~~~~~~~~~i~~~~~~ 227 (266)
...++.++|+.|+||||++..+......+. ..+.+++.... ....+-++...+.++.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g--~~V~lItaDtyR~gAveQLk~yae~lgv 262 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQN--RTVGFITTDTFRSGAVEQFQGYADKLDV 262 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEeCCccCccHHHHHHHHhhcCCC
Confidence 468999999999999999888876653222 23445554321 1223334444444444
No 344
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.68 E-value=0.0059 Score=60.46 Aligned_cols=47 Identities=26% Similarity=0.368 Sum_probs=36.0
Q ss_pred ccccchHHHHHHHHHHhCC-------C--CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 149 EAFESRKSILNDALDALSN-------P--NVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 149 ~~~~gr~~~~~~l~~~l~~-------~--~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
..++|.+..++.+...+.. + ...++.++|+.|+|||++|+.+.....
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~ 620 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLF 620 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3467888888877776631 1 245788999999999999999998753
No 345
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.68 E-value=0.0088 Score=46.27 Aligned_cols=24 Identities=38% Similarity=0.555 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 172 VIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 172 vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
++.|+|..|+||||||+.+.....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999988753
No 346
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.68 E-value=0.0076 Score=49.87 Aligned_cols=87 Identities=21% Similarity=0.276 Sum_probs=54.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHH-HHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCC--------------C--C
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVC-DQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLN--------------I--C 230 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~-~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~--------------~--~ 230 (266)
+...++.|.|.+|+|||+|+.++. +..+. .=+.++|++...++ .++.+.+- +++.+ . .
T Consensus 17 p~gs~~li~G~~GsGKT~l~~q~l~~~~~~--~ge~vlyvs~ee~~--~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~ 91 (226)
T PF06745_consen 17 PKGSVVLISGPPGSGKTTLALQFLYNGLKN--FGEKVLYVSFEEPP--EELIENMK-SFGWDLEEYEDSGKLKIIDAFPE 91 (226)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHH--HT--EEEEESSS-H--HHHHHHHH-TTTS-HHHHHHTTSEEEEESSGG
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHhhhh--cCCcEEEEEecCCH--HHHHHHHH-HcCCcHHHHhhcCCEEEEecccc
Confidence 356899999999999999988765 44431 13567888876553 44444432 33321 0 0
Q ss_pred -----CCCHHHHHHHHHHHHhcCCeEEEEEeCCC
Q 045699 231 -----EGSESERAMMLCGQLKKGKKILFVLDNIW 259 (266)
Q Consensus 231 -----~~~~~~~~~~l~~~L~~~kr~LlvlDDvw 259 (266)
..+..++...+.+.++..+...+|+|.+.
T Consensus 92 ~~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls 125 (226)
T PF06745_consen 92 RIGWSPNDLEELLSKIREAIEELKPDRVVIDSLS 125 (226)
T ss_dssp GST-TSCCHHHHHHHHHHHHHHHTSSEEEEETHH
T ss_pred cccccccCHHHHHHHHHHHHHhcCCCEEEEECHH
Confidence 23566777788877775355788999754
No 347
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=96.67 E-value=0.01 Score=56.36 Aligned_cols=27 Identities=22% Similarity=0.346 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
.....++|+|.+|+|||||++.+..-.
T Consensus 359 ~~G~~v~IvG~sGsGKSTLl~lL~gl~ 385 (588)
T PRK13657 359 KPGQTVAIVGPTGAGKSTLINLLQRVF 385 (588)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 456889999999999999999997653
No 348
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=96.67 E-value=0.01 Score=53.82 Aligned_cols=89 Identities=17% Similarity=0.216 Sum_probs=53.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCH-HHHHHHHHHH-hcC------CCCCCCH-----
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDV-KRIQGDVADQ-LSL------NICEGSE----- 234 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~-~~~~~~i~~~-~~~------~~~~~~~----- 234 (266)
.+-..++|+|..|+|||||++.+..... -+..+...+.+.... .++....+.. +.. ..+....
T Consensus 155 ~~Gq~~~i~G~sG~GKStLl~~i~~~~~----~~v~vi~~iGergrev~e~~~~~l~~~l~~tvvV~atsddsp~~R~~~ 230 (434)
T PRK08472 155 GKGQKLGIFAGSGVGKSTLMGMIVKGCL----APIKVVALIGERGREIPEFIEKNLGGDLENTVIVVATSDDSPLMRKYG 230 (434)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhccC----CCEEEEEeeCccchhHHHHHHHHhcCcccceEEEEECCCCCHHHhhHH
Confidence 4567999999999999999999987543 345555656555433 2332222211 100 0111111
Q ss_pred HHHHHHHHHHHhc-CCeEEEEEeCCCC
Q 045699 235 SERAMMLCGQLKK-GKKILFVLDNIWT 260 (266)
Q Consensus 235 ~~~~~~l~~~L~~-~kr~LlvlDDvw~ 260 (266)
......+.+++++ |++.||++||+..
T Consensus 231 ~~~a~~iAEyFrd~G~~Vll~~DslTr 257 (434)
T PRK08472 231 AFCAMSVAEYFKNQGLDVLFIMDSVTR 257 (434)
T ss_pred HHHHHHHHHHHHHcCCCEEEecccchH
Confidence 1123446666644 6999999999865
No 349
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.67 E-value=0.028 Score=46.60 Aligned_cols=88 Identities=22% Similarity=0.243 Sum_probs=52.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCC------------------
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNI------------------ 229 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~------------------ 229 (266)
+....+.|.|.+|+|||||+..+....- ..-...+|++...+ ...+... +.+++...
T Consensus 18 ~~G~~~~i~G~~G~GKT~l~~~~~~~~~--~~g~~~~~is~e~~--~~~i~~~-~~~~g~~~~~~~~~~~l~i~d~~~~~ 92 (229)
T TIGR03881 18 PRGFFVAVTGEPGTGKTIFCLHFAYKGL--RDGDPVIYVTTEES--RESIIRQ-AAQFGMDFEKAIEEGKLVIIDALMKE 92 (229)
T ss_pred cCCeEEEEECCCCCChHHHHHHHHHHHH--hcCCeEEEEEccCC--HHHHHHH-HHHhCCCHHHHhhcCCEEEEEccccc
Confidence 3568999999999999999998755432 12356788876543 3444333 33332210
Q ss_pred -------CCCCHHHHHHHHHHHHhc-C-CeEEEEEeCCCC
Q 045699 230 -------CEGSESERAMMLCGQLKK-G-KKILFVLDNIWT 260 (266)
Q Consensus 230 -------~~~~~~~~~~~l~~~L~~-~-kr~LlvlDDvw~ 260 (266)
...+.+++...+.+.++. + +.-++|+|.+..
T Consensus 93 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~vvIDsl~~ 132 (229)
T TIGR03881 93 KEDEWSLRELSIEELLNKVIEAKKYLGYGHARLVIDSMSA 132 (229)
T ss_pred cccccccccCCHHHHHHHHHHHHHhhccCceEEEecCchh
Confidence 113455566666665543 1 334788887643
No 350
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=96.66 E-value=0.0088 Score=48.59 Aligned_cols=25 Identities=40% Similarity=0.551 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
...+++|+|.+|+|||||.+.+...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 25 KGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4679999999999999999999886
No 351
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.66 E-value=0.0015 Score=52.43 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 171 DVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 171 ~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
.++.|+|+.|+|||||++.+....
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 478999999999999999997764
No 352
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=96.65 E-value=0.017 Score=51.66 Aligned_cols=27 Identities=30% Similarity=0.498 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
.-.+++|+|++|+|||||.+.+..-..
T Consensus 39 ~Ge~~~LlGpsGsGKSTLLr~IaGl~~ 65 (375)
T PRK09452 39 NGEFLTLLGPSGCGKTTVLRLIAGFET 65 (375)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 467999999999999999999987543
No 353
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.65 E-value=0.0019 Score=52.54 Aligned_cols=26 Identities=35% Similarity=0.451 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
...+|+|+|+.|+|||||++.+....
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45789999999999999999998864
No 354
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.65 E-value=0.0057 Score=49.20 Aligned_cols=26 Identities=19% Similarity=0.355 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
...+|.|+|+.|+|||||++.+....
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 45789999999999999999998753
No 355
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.64 E-value=0.038 Score=47.46 Aligned_cols=35 Identities=26% Similarity=0.202 Sum_probs=29.3
Q ss_pred HHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 161 ALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 161 l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
..+++...+..++.|+|..|+|||||+..+.+...
T Consensus 95 ~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~ 129 (290)
T PRK10463 95 NRARFAARKQLVLNLVSSPGSGKTTLLTETLMRLK 129 (290)
T ss_pred HHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34444567899999999999999999999999864
No 356
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.64 E-value=0.0022 Score=50.48 Aligned_cols=27 Identities=26% Similarity=0.394 Sum_probs=23.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
....|.++|+.|+||||+|+.+.....
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 356899999999999999999998764
No 357
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.64 E-value=0.0095 Score=53.43 Aligned_cols=27 Identities=30% Similarity=0.287 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
...+|.++|+.|+||||.+..+.....
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357999999999999998888876644
No 358
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=96.64 E-value=0.0016 Score=52.38 Aligned_cols=23 Identities=43% Similarity=0.673 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 045699 172 VIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 172 vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
+|+|.|.+|+||||||+.+....
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999875
No 359
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=96.63 E-value=0.0066 Score=55.65 Aligned_cols=26 Identities=27% Similarity=0.452 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
.-+..+|+|.+|+||||+.+.+|...
T Consensus 100 ~g~rygLiG~nG~Gkst~L~~i~~~e 125 (614)
T KOG0927|consen 100 RGRRYGLIGPNGSGKSTFLRAIAGRE 125 (614)
T ss_pred CCceEEEEcCCCCcHhHHHHHHhcCC
Confidence 46789999999999999999999874
No 360
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=96.63 E-value=0.013 Score=53.52 Aligned_cols=89 Identities=18% Similarity=0.280 Sum_probs=52.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCC-CHHHHHHHHHHHhcC-------C-CCCCCHH---
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTP-DVKRIQGDVADQLSL-------N-ICEGSES--- 235 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~i~~~~~~-------~-~~~~~~~--- 235 (266)
.+...++|+|.+|+|||||++.+.+... -+..+...+.... ...++..+.+..-+. . .+.....
T Consensus 161 ~~Gq~~~I~G~sG~GKStLl~~I~~~~~----~~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~~d~~p~~r~~ 236 (440)
T TIGR01026 161 GKGQRIGIFAGSGVGKSTLLGMIARNTE----ADVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVATSDQSPLLRLK 236 (440)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCC----CCEEEEEEEeecchHHHHHHHHHhcccccceEEEEEECCCCCHHHHHH
Confidence 3467899999999999999999987643 2333444554433 334444444332111 1 1111111
Q ss_pred --HHHHHHHHHHhc-CCeEEEEEeCCCC
Q 045699 236 --ERAMMLCGQLKK-GKKILFVLDNIWT 260 (266)
Q Consensus 236 --~~~~~l~~~L~~-~kr~LlvlDDvw~ 260 (266)
..+..+.+++.+ |+..||++||+..
T Consensus 237 ~~~~a~t~AE~frd~G~~Vll~~DslTr 264 (440)
T TIGR01026 237 GAYVATAIAEYFRDQGKDVLLLMDSVTR 264 (440)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEeChHH
Confidence 223345566643 6999999999864
No 361
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=96.63 E-value=0.011 Score=46.27 Aligned_cols=46 Identities=26% Similarity=0.380 Sum_probs=32.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcC
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSL 227 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~ 227 (266)
.+++.|+|.+|+||||+.+.+-... + |... -+.-.++-+++...|.
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l-~---~~~i--------vNyG~~Mle~A~k~gl 49 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL-V---KHKI--------VNYGDLMLEIAKKKGL 49 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH-h---hcee--------eeHhHHHHHHHHHhCC
Confidence 5899999999999999999887765 1 1111 1445666677766665
No 362
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.63 E-value=0.0022 Score=50.84 Aligned_cols=27 Identities=26% Similarity=0.340 Sum_probs=24.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
...+++|+|..|+|||||++.+.....
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~ 31 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALC 31 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHh
Confidence 467999999999999999999998765
No 363
>PRK04040 adenylate kinase; Provisional
Probab=96.62 E-value=0.0021 Score=51.84 Aligned_cols=26 Identities=35% Similarity=0.560 Sum_probs=23.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
..+|.|+|+.|+||||+++.+.....
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 36899999999999999999988763
No 364
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.62 E-value=0.024 Score=49.61 Aligned_cols=27 Identities=37% Similarity=0.422 Sum_probs=23.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
...+++++|++|+||||++..+.....
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~ 139 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYK 139 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 468999999999999999999977654
No 365
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=96.61 E-value=0.023 Score=52.01 Aligned_cols=92 Identities=17% Similarity=0.194 Sum_probs=59.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccccCC--CeEEEEEeCCCC-CHHHHHHHHHHHhcC-------CCCCCC-HH--
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVC--DEVVFVEVSRTP-DVKRIQGDVADQLSL-------NICEGS-ES-- 235 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f--~~~~wv~v~~~~-~~~~~~~~i~~~~~~-------~~~~~~-~~-- 235 (266)
.-..++|+|..|+|||||+..+.+.....+.+ ..++++.+++.. ...++..++...-.. ...+.+ ..
T Consensus 140 ~GQR~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~ 219 (458)
T TIGR01041 140 RGQKLPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERI 219 (458)
T ss_pred cCCEEEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHH
Confidence 56789999999999999999998876432111 167778887654 344566555543222 111121 11
Q ss_pred ---HHHHHHHHHHh-c-CCeEEEEEeCCCC
Q 045699 236 ---ERAMMLCGQLK-K-GKKILFVLDNIWT 260 (266)
Q Consensus 236 ---~~~~~l~~~L~-~-~kr~LlvlDDvw~ 260 (266)
.....+.++++ + |++.||++||+..
T Consensus 220 ~a~~~a~tiAEyfr~d~G~~VLli~DslTR 249 (458)
T TIGR01041 220 VTPRMALTAAEYLAFEKDMHVLVILTDMTN 249 (458)
T ss_pred HHHHHHHHHHHHHHHccCCcEEEEEcChhH
Confidence 22445788887 3 7999999999864
No 366
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=96.61 E-value=0.03 Score=49.26 Aligned_cols=88 Identities=13% Similarity=0.202 Sum_probs=56.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCC-CHHHHHHHHHHH----hcC----------CCCCC
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTP-DVKRIQGDVADQ----LSL----------NICEG 232 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~i~~~----~~~----------~~~~~ 232 (266)
.+-..++|.|..|+|||+|++.+.+.. +-+.++++.+.+.. ...+++.++-+. .+. +..++
T Consensus 155 ~kGqr~~I~G~~G~GKT~L~~~Iak~~----~~dvvVyv~iGERg~Ev~e~l~ef~~l~~~~~~~~~m~rtvlV~nts~~ 230 (369)
T cd01134 155 VKGGTAAIPGPFGCGKTVIQQSLSKYS----NSDIVIYVGCGERGNEMTEVLEEFPELTDPVTGEPLMKRTVLIANTSNM 230 (369)
T ss_pred cCCCEEEEECCCCCChHHHHHHHHhCC----CCCEEEEEEeCCChHHHHHHHHHHHhhccccccCCccceEEEEEECCCC
Confidence 356799999999999999999998864 34678888887654 344555554221 111 11222
Q ss_pred CHH------HHHHHHHHHHhc-CCeEEEEEeCCC
Q 045699 233 SES------ERAMMLCGQLKK-GKKILFVLDNIW 259 (266)
Q Consensus 233 ~~~------~~~~~l~~~L~~-~kr~LlvlDDvw 259 (266)
+.. ...-.+.+++++ |+..|+++|++.
T Consensus 231 p~~~R~~s~yta~tiAEYfrd~G~dVll~~Ds~t 264 (369)
T cd01134 231 PVAAREASIYTGITIAEYFRDMGYNVALMADSTS 264 (369)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcChh
Confidence 211 123345677754 699999999975
No 367
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.60 E-value=0.0063 Score=51.23 Aligned_cols=24 Identities=33% Similarity=0.582 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 172 VIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 172 vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
.|.++|++|+||||+|+.+.....
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~ 24 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLS 24 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999988764
No 368
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.60 E-value=0.016 Score=54.79 Aligned_cols=49 Identities=18% Similarity=0.292 Sum_probs=40.0
Q ss_pred CcccccchHHHHHHHHHHhCCCC-CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 147 GYEAFESRKSILNDALDALSNPN-VDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 147 ~~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
...+++|.+..+..|.+.+...+ ...+.++|+.|+||||+|+.+.+..-
T Consensus 14 sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~ 63 (624)
T PRK14959 14 TFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALN 63 (624)
T ss_pred CHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhcc
Confidence 35678898888888888887655 46777899999999999999988764
No 369
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.60 E-value=0.014 Score=56.69 Aligned_cols=86 Identities=19% Similarity=0.222 Sum_probs=59.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCC------CCCHHHHHHHHH
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNIC------EGSESERAMMLC 242 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~------~~~~~~~~~~l~ 242 (266)
...++-|+|..|+|||||+..+..... ..-..++|+.....+++. .+++++.+.+ ..+.++....+.
T Consensus 59 ~GsiteI~G~~GsGKTtLal~~~~~a~--~~G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~~E~~l~~i~ 131 (790)
T PRK09519 59 RGRVIEIYGPESSGKTTVALHAVANAQ--AAGGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 131 (790)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCCHHHHHHHHH
Confidence 468888999999999999977655433 223567899888887743 6777777432 223455556666
Q ss_pred HHHhcCCeEEEEEeCCCCC
Q 045699 243 GQLKKGKKILFVLDNIWTS 261 (266)
Q Consensus 243 ~~L~~~kr~LlvlDDvw~~ 261 (266)
..++.++--|||+|-|-..
T Consensus 132 ~lv~~~~~~LVVIDSI~aL 150 (790)
T PRK09519 132 MLIRSGALDIVVIDSVAAL 150 (790)
T ss_pred HHhhcCCCeEEEEcchhhh
Confidence 6666546668999987643
No 370
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=96.60 E-value=0.016 Score=55.13 Aligned_cols=28 Identities=32% Similarity=0.503 Sum_probs=24.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
..-..++|+|..|+|||||++.+..-..
T Consensus 365 ~~Ge~iaIvG~SGsGKSTLl~lL~gl~~ 392 (592)
T PRK10790 365 PSRGFVALVGHTGSGKSTLASLLMGYYP 392 (592)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 4678999999999999999999976543
No 371
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=96.59 E-value=0.018 Score=55.46 Aligned_cols=49 Identities=18% Similarity=0.368 Sum_probs=40.3
Q ss_pred CcccccchHHHHHHHHHHhCCCCCc-EEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 147 GYEAFESRKSILNDALDALSNPNVD-VIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 147 ~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
...+++|.+..++.|.+++...++. .+.++|+.|+||||+|+.+....-
T Consensus 16 ~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~Ln 65 (725)
T PRK07133 16 TFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALN 65 (725)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhc
Confidence 3667899999999999988766654 457899999999999999987653
No 372
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.59 E-value=0.0064 Score=54.23 Aligned_cols=40 Identities=23% Similarity=0.357 Sum_probs=32.0
Q ss_pred HHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhcc
Q 045699 157 ILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAKK 196 (266)
Q Consensus 157 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 196 (266)
..+.+++.+.......+.|.|+||.|||+|.+.+.+..+.
T Consensus 9 ~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~ 48 (364)
T PF05970_consen 9 VFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRS 48 (364)
T ss_pred HHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhcc
Confidence 3455566665566788999999999999999999998753
No 373
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.59 E-value=0.0021 Score=52.93 Aligned_cols=27 Identities=26% Similarity=0.441 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
..-.+++|+|++|+|||||++.+..-.
T Consensus 28 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 28 EKGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 356799999999999999999997764
No 374
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=96.59 E-value=0.025 Score=52.10 Aligned_cols=89 Identities=13% Similarity=0.247 Sum_probs=57.4
Q ss_pred CCcEEEEEcCCCCcHHHHH-HHHHHHhccccCCC-eEEEEEeCCCCC-HHHHHHHHHHHhcCC-------CCCCC-HHH-
Q 045699 169 NVDVIGLCGVGGIGKTTLA-KIVCDQAKKLKVCD-EVVFVEVSRTPD-VKRIQGDVADQLSLN-------ICEGS-ESE- 236 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa-~~v~~~~~~~~~f~-~~~wv~v~~~~~-~~~~~~~i~~~~~~~-------~~~~~-~~~- 236 (266)
.-..++|+|..|+|||||| ..+.++. .-+ .++++.+++... ..++...+...-... ..+.+ ...
T Consensus 161 rGQR~~Ifg~~g~GKT~Lal~~I~~q~----~~dv~~V~~~IGeR~rev~e~i~~l~~~~~l~~tvvV~atsd~p~~~r~ 236 (497)
T TIGR03324 161 RGQRELILGDRQTGKTAIAIDTILNQK----GRNVLCIYCAIGQRASAVAKVVANLREHGAMDYTIVVVTEGNDPPGLQY 236 (497)
T ss_pred cCCEEEeecCCCCCHHHHHHHHHHHhc----CCCcEEEEEEeccCcHHHHHHHHHhhhcCCcceeEEEEeCCCCCHHHHH
Confidence 5678999999999999996 5777763 234 478899987653 445555555432221 11112 111
Q ss_pred ----HHHHHHHHHhc-CCeEEEEEeCCCCC
Q 045699 237 ----RAMMLCGQLKK-GKKILFVLDNIWTS 261 (266)
Q Consensus 237 ----~~~~l~~~L~~-~kr~LlvlDDvw~~ 261 (266)
....+.+++++ |+..|||+||+...
T Consensus 237 ~ap~~a~aiAEyfrd~G~~VLlv~DdlTr~ 266 (497)
T TIGR03324 237 IAPYAATSIGEHFMEQGRDVLIVYDDLTQH 266 (497)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEcChhHH
Confidence 13345667744 69999999998653
No 375
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.59 E-value=0.014 Score=46.66 Aligned_cols=29 Identities=31% Similarity=0.568 Sum_probs=25.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhcc
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKK 196 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 196 (266)
+....+-++|++|+|||||.+.+|...+.
T Consensus 26 ~~Gef~fl~GpSGAGKSTllkLi~~~e~p 54 (223)
T COG2884 26 PKGEFVFLTGPSGAGKSTLLKLIYGEERP 54 (223)
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhhhcC
Confidence 35678999999999999999999998654
No 376
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.58 E-value=0.0076 Score=53.81 Aligned_cols=83 Identities=28% Similarity=0.323 Sum_probs=50.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCC------CCCHHHHHHHHH
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNIC------EGSESERAMMLC 242 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~------~~~~~~~~~~l~ 242 (266)
.-.++.|.|.+|+|||||+..+...... .-..++|++.... ..++. .-+.+++...+ ..+.++ +.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a~--~g~~VlYvs~EEs--~~qi~-~Ra~rlg~~~~~l~l~~e~~le~----I~ 151 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLAK--RGGKVLYVSGEES--PEQIK-LRADRLGISTENLYLLAETNLED----IL 151 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHh--cCCeEEEEECCcC--HHHHH-HHHHHcCCCcccEEEEccCcHHH----HH
Confidence 4579999999999999999999876542 2246777766543 33332 22445554322 122233 33
Q ss_pred HHHhcCCeEEEEEeCCCC
Q 045699 243 GQLKKGKKILFVLDNIWT 260 (266)
Q Consensus 243 ~~L~~~kr~LlvlDDvw~ 260 (266)
+.+...+.-+||+|.+-.
T Consensus 152 ~~i~~~~~~lVVIDSIq~ 169 (372)
T cd01121 152 ASIEELKPDLVIIDSIQT 169 (372)
T ss_pred HHHHhcCCcEEEEcchHH
Confidence 333333666899999754
No 377
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=96.58 E-value=0.016 Score=55.00 Aligned_cols=28 Identities=29% Similarity=0.491 Sum_probs=24.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
+....++|+|..|+|||||++.+..-..
T Consensus 367 ~~G~~~aIvG~sGsGKSTLl~ll~gl~~ 394 (582)
T PRK11176 367 PAGKTVALVGRSGSGKSTIANLLTRFYD 394 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 4567899999999999999999977643
No 378
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.58 E-value=0.0024 Score=50.66 Aligned_cols=27 Identities=26% Similarity=0.485 Sum_probs=24.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
...+|.|+|++|+||||+|+.+.....
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~ 29 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLR 29 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 457999999999999999999998764
No 379
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.58 E-value=0.0021 Score=52.58 Aligned_cols=27 Identities=22% Similarity=0.379 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
..-.+++|+|++|+|||||++.+....
T Consensus 25 ~~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 25 KKGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 356799999999999999999998764
No 380
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=96.58 E-value=0.023 Score=55.20 Aligned_cols=27 Identities=30% Similarity=0.390 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
+....++|+|..|+|||||++.+..-.
T Consensus 498 ~~G~~vaIvG~SGsGKSTLlklL~gl~ 524 (708)
T TIGR01193 498 KMNSKTTIVGMSGSGKSTLAKLLVGFF 524 (708)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 456899999999999999999996653
No 381
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=96.57 E-value=0.018 Score=52.74 Aligned_cols=90 Identities=13% Similarity=0.226 Sum_probs=55.5
Q ss_pred CCCcEEEEEcCCCCcHHHH-HHHHHHHhccccCCC-eEEEEEeCCCCC-HHHHHHHHHHHhcC-------CCCCCC-HHH
Q 045699 168 PNVDVIGLCGVGGIGKTTL-AKIVCDQAKKLKVCD-EVVFVEVSRTPD-VKRIQGDVADQLSL-------NICEGS-ESE 236 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtL-a~~v~~~~~~~~~f~-~~~wv~v~~~~~-~~~~~~~i~~~~~~-------~~~~~~-~~~ 236 (266)
..-..++|+|..|+||||| ...+.+.. .-+ .++++.+++..+ ..++...+...-.. ...+.+ ...
T Consensus 139 grGQR~~I~g~~g~GKt~Lal~~I~~q~----~~dv~cV~~~IGer~rev~e~~~~l~~~~~l~~tvvV~atad~~~~~r 214 (485)
T CHL00059 139 GRGQRELIIGDRQTGKTAVATDTILNQK----GQNVICVYVAIGQKASSVAQVVTTLQERGAMEYTIVVAETADSPATLQ 214 (485)
T ss_pred ccCCEEEeecCCCCCHHHHHHHHHHhcc----cCCeEEEEEEecCCchHHHHHHHHhhcccchhceEEEEeCCCCCHHHH
Confidence 3567899999999999999 45666653 224 458888886643 44555555443221 111111 111
Q ss_pred -----HHHHHHHHHhc-CCeEEEEEeCCCCC
Q 045699 237 -----RAMMLCGQLKK-GKKILFVLDNIWTS 261 (266)
Q Consensus 237 -----~~~~l~~~L~~-~kr~LlvlDDvw~~ 261 (266)
....+.+++++ |++.|||+||+...
T Consensus 215 ~~ap~~a~aiAEyfr~~G~~VLlv~DdlTr~ 245 (485)
T CHL00059 215 YLAPYTGAALAEYFMYRGRHTLIIYDDLSKQ 245 (485)
T ss_pred HHHHHHHhhHHHHHHHcCCCEEEEEcChhHH
Confidence 12335666654 69999999998653
No 382
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.55 E-value=0.027 Score=53.74 Aligned_cols=48 Identities=21% Similarity=0.358 Sum_probs=40.4
Q ss_pred cccccchHHHHHHHHHHhCCCCC-cEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 148 YEAFESRKSILNDALDALSNPNV-DVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 148 ~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
...++|.+..+..|..++...++ .-+.++|+.|+||||+|+.+.....
T Consensus 15 f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~ 63 (620)
T PRK14948 15 FDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLN 63 (620)
T ss_pred HhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhc
Confidence 56788999999999888876544 5678999999999999999988864
No 383
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.55 E-value=0.015 Score=50.56 Aligned_cols=110 Identities=21% Similarity=0.266 Sum_probs=70.9
Q ss_pred cccccchHHHHHHHHHHhC----CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHH-HHHHHH
Q 045699 148 YEAFESRKSILNDALDALS----NPNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKR-IQGDVA 222 (266)
Q Consensus 148 ~~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~-~~~~i~ 222 (266)
...++|..++..++-.|+. ......+.|+|+.|.|||+|...+..+.+ ..-+...-|......-.++ .++.|.
T Consensus 23 ~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q--~~~E~~l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 23 HINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQ--ENGENFLLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred CcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHH--hcCCeEEEEEECccchhhHHHHHHHH
Confidence 3456777777777777764 34567888999999999999998888732 2224555566655543332 456676
Q ss_pred HHhcCCC-----CCCCHHHHHHHHHHHHhcC-----CeEEEEEeCCC
Q 045699 223 DQLSLNI-----CEGSESERAMMLCGQLKKG-----KKILFVLDNIW 259 (266)
Q Consensus 223 ~~~~~~~-----~~~~~~~~~~~l~~~L~~~-----kr~LlvlDDvw 259 (266)
.|+.... ..++..+-...|...|..| -+.+.|+|++.
T Consensus 101 rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfD 147 (408)
T KOG2228|consen 101 RQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFD 147 (408)
T ss_pred HHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhh
Confidence 6665422 2345556666777777652 35677787764
No 384
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.55 E-value=0.002 Score=51.57 Aligned_cols=24 Identities=46% Similarity=0.764 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 172 VIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 172 vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
+|+|.|..|+||||||+.+.....
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~ 24 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLR 24 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999998764
No 385
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=96.54 E-value=0.0093 Score=54.21 Aligned_cols=90 Identities=17% Similarity=0.279 Sum_probs=52.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCC-CCHHHHHHHHHHHhcC-------CCCCCCH-H---
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRT-PDVKRIQGDVADQLSL-------NICEGSE-S--- 235 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~-~~~~~~~~~i~~~~~~-------~~~~~~~-~--- 235 (266)
..-..++|+|.+|+|||||++.+.+..+ -+.++...+... -...++.++++..-.. ...+.+. .
T Consensus 173 ~~Gqri~I~G~sG~GKTTLL~~Ia~~~~----~d~iv~g~Igerg~ev~e~~~~~~~~~~~~~tvVv~~~ad~~~~~r~~ 248 (455)
T PRK07960 173 GRGQRMGLFAGSGVGKSVLLGMMARYTQ----ADVIVVGLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQ 248 (455)
T ss_pred cCCcEEEEECCCCCCccHHHHHHhCCCC----CCEEEEEEEEECCeEHHHHHHhhcCcCCCceEEEEEECCCCCHHHHHH
Confidence 3567899999999999999999987543 233333333322 2334444443322111 1112221 1
Q ss_pred --HHHHHHHHHHhc-CCeEEEEEeCCCCC
Q 045699 236 --ERAMMLCGQLKK-GKKILFVLDNIWTS 261 (266)
Q Consensus 236 --~~~~~l~~~L~~-~kr~LlvlDDvw~~ 261 (266)
..+..+.+++++ |+..|+++||+...
T Consensus 249 ~~~~a~tiAEyfrd~G~~Vll~~DslTr~ 277 (455)
T PRK07960 249 GAAYATRIAEDFRDRGQHVLLIMDSLTRY 277 (455)
T ss_pred HHHHHHHHHHHHHHcCCCeEEEecchhHH
Confidence 223345666654 69999999998653
No 386
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.54 E-value=0.0024 Score=51.44 Aligned_cols=26 Identities=31% Similarity=0.404 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
.-.+++|+|++|+|||||++.+....
T Consensus 17 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 17 RGEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 46799999999999999999998754
No 387
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=96.54 E-value=0.022 Score=54.93 Aligned_cols=27 Identities=30% Similarity=0.585 Sum_probs=23.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
....+++|+|++|+|||||++.+..-.
T Consensus 476 ~~Ge~~~IvG~nGsGKSTLl~lL~Gl~ 502 (659)
T TIGR00954 476 PSGNHLLICGPNGCGKSSLFRILGELW 502 (659)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356799999999999999999998764
No 388
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.54 E-value=0.0057 Score=46.30 Aligned_cols=28 Identities=32% Similarity=0.165 Sum_probs=24.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhcc
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAKK 196 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 196 (266)
...+|.+.|.-|+|||||++.+......
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 4569999999999999999999998654
No 389
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.54 E-value=0.0022 Score=48.94 Aligned_cols=24 Identities=33% Similarity=0.602 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 172 VIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 172 vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
+|.|+|+.|+||||+|+.+.....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999988753
No 390
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.53 E-value=0.0023 Score=52.55 Aligned_cols=27 Identities=26% Similarity=0.433 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
..-.+++|+|++|+|||||++.+..-.
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 27 TKGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356799999999999999999998764
No 391
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=96.52 E-value=0.0027 Score=51.47 Aligned_cols=26 Identities=35% Similarity=0.454 Sum_probs=23.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
..+|+|-||-|+||||||+.+.+..+
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 57899999999999999999999875
No 392
>PRK05642 DNA replication initiation factor; Validated
Probab=96.52 E-value=0.0099 Score=49.64 Aligned_cols=38 Identities=21% Similarity=0.461 Sum_probs=28.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeC
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVS 209 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~ 209 (266)
...+.|+|..|+|||.|++.+.+....+ -..++|++..
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~--~~~v~y~~~~ 82 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQR--GEPAVYLPLA 82 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhC--CCcEEEeeHH
Confidence 3678999999999999999998875422 2345666654
No 393
>PRK00625 shikimate kinase; Provisional
Probab=96.52 E-value=0.0024 Score=50.73 Aligned_cols=24 Identities=33% Similarity=0.548 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 172 VIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 172 vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
.|.++||.|+||||+++.+.+...
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999988754
No 394
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.52 E-value=0.0023 Score=46.50 Aligned_cols=23 Identities=35% Similarity=0.330 Sum_probs=20.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHH
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVC 191 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~ 191 (266)
.-..++|+|+.|+|||||++.+.
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 35789999999999999999976
No 395
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=96.52 E-value=0.011 Score=54.20 Aligned_cols=93 Identities=20% Similarity=0.273 Sum_probs=61.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCC-HHHHHHHHHH-----Hhc--C-------CCCCC
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPD-VKRIQGDVAD-----QLS--L-------NICEG 232 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~-~~~~~~~i~~-----~~~--~-------~~~~~ 232 (266)
..-..++|+|..|+|||||+..+...... .+-+.++++-+++... ..++...++. .-+ . ...+.
T Consensus 159 gkGQR~gIfgg~GvGKs~L~~~~~~~~~~-~~~dv~V~~lIGERgrEv~efi~~~~~~~~~~~~~~~~~rsvvv~atsd~ 237 (494)
T CHL00060 159 RRGGKIGLFGGAGVGKTVLIMELINNIAK-AHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNE 237 (494)
T ss_pred ccCCEEeeecCCCCChhHHHHHHHHHHHH-hcCCeEEEEEeccCchHHHHHHHHHHhcCccccCcccccceEEEEECCCC
Confidence 35678999999999999999988776321 2237888998887643 4566666665 211 0 11111
Q ss_pred C-H-----HHHHHHHHHHHhc-CC-eEEEEEeCCCCC
Q 045699 233 S-E-----SERAMMLCGQLKK-GK-KILFVLDNIWTS 261 (266)
Q Consensus 233 ~-~-----~~~~~~l~~~L~~-~k-r~LlvlDDvw~~ 261 (266)
+ . ...+..+.+++++ ++ +.||++||+...
T Consensus 238 p~~~R~~a~~~A~tiAEyfrd~g~~~VLll~DslTR~ 274 (494)
T CHL00060 238 PPGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRF 274 (494)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCCEEEEcccchHH
Confidence 2 1 1234457888865 34 999999998653
No 396
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.52 E-value=0.0028 Score=51.50 Aligned_cols=28 Identities=25% Similarity=0.328 Sum_probs=24.9
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 167 NPNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 167 ~~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
.++..+|.|+|++|+||||||+.+....
T Consensus 21 ~~~~~~i~i~G~~GsGKSTla~~l~~~l 48 (198)
T PRK03846 21 GHKGVVLWFTGLSGSGKSTVAGALEEAL 48 (198)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3567899999999999999999998865
No 397
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=96.52 E-value=0.0089 Score=47.99 Aligned_cols=24 Identities=33% Similarity=0.610 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 172 VIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 172 vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
+|.|.|+.|+||||+++.+.+...
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~ 25 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLE 25 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998864
No 398
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=96.51 E-value=0.0042 Score=49.72 Aligned_cols=36 Identities=33% Similarity=0.302 Sum_probs=28.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEE
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVE 207 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~ 207 (266)
.+++.|+|+.|+|||||++.+..... ..|...+..+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~--~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFP--DKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHST--TTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcc--cccccceeec
Confidence 57899999999999999999999765 4564444443
No 399
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=96.51 E-value=0.0071 Score=57.59 Aligned_cols=76 Identities=12% Similarity=0.092 Sum_probs=57.7
Q ss_pred cccccchHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcC
Q 045699 148 YEAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSL 227 (266)
Q Consensus 148 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~ 227 (266)
...+.|.+..++.|...+... ..+.++|+.|+||||+|+.+.+... ..+|+...|..-+ ..+...+++.++.++|.
T Consensus 30 ~~~vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l~-~~~~~~~~~~~np-~~~~~~~~~~v~~~~G~ 105 (637)
T PRK13765 30 IDQVIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELLP-KEELQDILVYPNP-EDPNNPKIRTVPAGKGK 105 (637)
T ss_pred HHHcCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHcC-hHhHHHheEeeCC-CcchHHHHHHHHHhcCH
Confidence 456788888888877766543 4789999999999999999998753 2346777886653 44677888888877765
No 400
>PF14516 AAA_35: AAA-like domain
Probab=96.51 E-value=0.079 Score=46.65 Aligned_cols=111 Identities=16% Similarity=0.220 Sum_probs=67.7
Q ss_pred cccchHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCC-----CCHHHHHHHHH--
Q 045699 150 AFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRT-----PDVKRIQGDVA-- 222 (266)
Q Consensus 150 ~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~-----~~~~~~~~~i~-- 222 (266)
-.+.|...-+.+.+.+.. ....+.|.|+-.+|||+|...+.+..+.. .+ .++++.+..- .+...+++.++
T Consensus 12 ~Yi~R~~~e~~~~~~i~~-~G~~~~I~apRq~GKTSll~~l~~~l~~~-~~-~~v~id~~~~~~~~~~~~~~f~~~~~~~ 88 (331)
T PF14516_consen 12 FYIERPPAEQECYQEIVQ-PGSYIRIKAPRQMGKTSLLLRLLERLQQQ-GY-RCVYIDLQQLGSAIFSDLEQFLRWFCEE 88 (331)
T ss_pred cccCchHHHHHHHHHHhc-CCCEEEEECcccCCHHHHHHHHHHHHHHC-CC-EEEEEEeecCCCcccCCHHHHHHHHHHH
Confidence 356777555556655543 36799999999999999999999887643 23 4456766542 24555555544
Q ss_pred --HHhcCCCC--------CCCHHHHHHHHHHHH-hc-CCeEEEEEeCCCCCCC
Q 045699 223 --DQLSLNIC--------EGSESERAMMLCGQL-KK-GKKILFVLDNIWTSLD 263 (266)
Q Consensus 223 --~~~~~~~~--------~~~~~~~~~~l~~~L-~~-~kr~LlvlDDvw~~~~ 263 (266)
++++.... ..+.......+.+++ .. .++.+|+||+|.....
T Consensus 89 i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~ 141 (331)
T PF14516_consen 89 ISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFE 141 (331)
T ss_pred HHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhcc
Confidence 44444210 112223333444443 21 3899999999987654
No 401
>PRK14532 adenylate kinase; Provisional
Probab=96.50 E-value=0.02 Score=45.89 Aligned_cols=22 Identities=32% Similarity=0.347 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 045699 173 IGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 173 i~I~G~~G~GKTtLa~~v~~~~ 194 (266)
|.|+|+.|+||||+|+.+....
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEER 24 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7789999999999999998754
No 402
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.50 E-value=0.0024 Score=50.91 Aligned_cols=26 Identities=27% Similarity=0.496 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
.-.+++|+|++|+|||||++.+....
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 56799999999999999999998754
No 403
>PRK13949 shikimate kinase; Provisional
Probab=96.49 E-value=0.0027 Score=50.25 Aligned_cols=25 Identities=40% Similarity=0.420 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 171 DVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 171 ~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
..|.|+|+.|+||||+++.+.....
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3589999999999999999988754
No 404
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=96.49 E-value=0.013 Score=55.88 Aligned_cols=76 Identities=13% Similarity=0.093 Sum_probs=53.0
Q ss_pred cccccchHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcC
Q 045699 148 YEAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSL 227 (266)
Q Consensus 148 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~ 227 (266)
...+.|.+..++.+...+... ..+.++|+.|+||||+++.+.+..... .|...+++.-+ ..+...+++.++.+++.
T Consensus 17 ~~~viG~~~a~~~l~~a~~~~--~~~ll~G~pG~GKT~la~~la~~l~~~-~~~~~~~~~n~-~~~~~~~~~~v~~~~g~ 92 (608)
T TIGR00764 17 IDQVIGQEEAVEIIKKAAKQK--RNVLLIGEPGVGKSMLAKAMAELLPDE-ELEDILVYPNP-EDPNMPRIVEVPAGEGR 92 (608)
T ss_pred HhhccCHHHHHHHHHHHHHcC--CCEEEECCCCCCHHHHHHHHHHHcCch-hheeEEEEeCC-CCCchHHHHHHHHhhch
Confidence 456788888887777666543 356699999999999999999876532 34444433333 23556678888887766
No 405
>PLN03130 ABC transporter C family member; Provisional
Probab=96.49 E-value=0.023 Score=60.06 Aligned_cols=29 Identities=24% Similarity=0.403 Sum_probs=25.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhcc
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKK 196 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 196 (266)
+....++|+|+.|+|||||++.+......
T Consensus 641 ~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~ 669 (1622)
T PLN03130 641 PVGSLVAIVGSTGEGKTSLISAMLGELPP 669 (1622)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHhhcc
Confidence 46789999999999999999999887653
No 406
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.49 E-value=0.017 Score=45.74 Aligned_cols=82 Identities=16% Similarity=0.171 Sum_probs=47.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcC-Ce
Q 045699 172 VIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNICEGSESERAMMLCGQLKKG-KK 250 (266)
Q Consensus 172 vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~L~~~-kr 250 (266)
++.|.|..|+|||++|..+... .....+|+.-.+.++.+ +...|..........-...+....|.+.+.+. +.
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~e-m~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~~ 74 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDDE-MAERIARHRKRRPAHWRTIETPRDLVSALKELDPG 74 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCHH-HHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCCC
Confidence 3678999999999999998654 23467788777777654 44444332211111111122233455555431 23
Q ss_pred EEEEEeCCC
Q 045699 251 ILFVLDNIW 259 (266)
Q Consensus 251 ~LlvlDDvw 259 (266)
-.|++|.+.
T Consensus 75 ~~VLIDclt 83 (169)
T cd00544 75 DVVLIDCLT 83 (169)
T ss_pred CEEEEEcHh
Confidence 378899764
No 407
>PRK13343 F0F1 ATP synthase subunit alpha; Provisional
Probab=96.48 E-value=0.02 Score=52.81 Aligned_cols=90 Identities=18% Similarity=0.273 Sum_probs=56.3
Q ss_pred CCCcEEEEEcCCCCcHHHHH-HHHHHHhccccCCCe-EEEEEeCCCCC-HHHHHHHHHHHhcCC--------CCCCCHHH
Q 045699 168 PNVDVIGLCGVGGIGKTTLA-KIVCDQAKKLKVCDE-VVFVEVSRTPD-VKRIQGDVADQLSLN--------ICEGSESE 236 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa-~~v~~~~~~~~~f~~-~~wv~v~~~~~-~~~~~~~i~~~~~~~--------~~~~~~~~ 236 (266)
.+-..++|+|..|+|||||| ..+.+.. .-+. ++++.+++..+ ..++...+...-... .+......
T Consensus 160 grGQR~~I~g~~g~GKt~Lal~~i~~~~----~~dv~~V~~~IGer~rev~e~~~~l~~~~~l~~tvvV~atsd~~~~~r 235 (502)
T PRK13343 160 GRGQRELIIGDRQTGKTAIAIDAIINQK----DSDVICVYVAIGQKASAVARVIETLREHGALEYTTVVVAEASDPPGLQ 235 (502)
T ss_pred ccCCEEEeeCCCCCCccHHHHHHHHhhc----CCCEEEEEEEeccChHHHHHHHHHHHhcCccceeEEEEecccccHHHH
Confidence 35678999999999999995 6677642 2354 48888887653 345555554432211 11111111
Q ss_pred -----HHHHHHHHHhc-CCeEEEEEeCCCCC
Q 045699 237 -----RAMMLCGQLKK-GKKILFVLDNIWTS 261 (266)
Q Consensus 237 -----~~~~l~~~L~~-~kr~LlvlDDvw~~ 261 (266)
....+.+++++ |++.|||+||+...
T Consensus 236 ~~ap~~a~aiAEyfrd~G~~VLlv~DdlTr~ 266 (502)
T PRK13343 236 YLAPFAGCAIAEYFRDQGQDALIVYDDLSKH 266 (502)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEecchHHH
Confidence 12345666654 69999999998653
No 408
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.47 E-value=0.0027 Score=52.94 Aligned_cols=27 Identities=22% Similarity=0.487 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
..-.+++|+|++|+|||||++.+....
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 24 RRGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356799999999999999999998764
No 409
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.47 E-value=0.018 Score=53.41 Aligned_cols=87 Identities=11% Similarity=0.144 Sum_probs=56.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCC----------------CC
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNI----------------CE 231 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~----------------~~ 231 (266)
..-.++.|.|++|+|||||+.++...... .-+.++|++... ++.++.+.. ++++.+. ..
T Consensus 261 ~~gs~~li~G~~G~GKt~l~~~f~~~~~~--~ge~~~y~s~eE--s~~~i~~~~-~~lg~~~~~~~~~g~l~~~~~~p~~ 335 (484)
T TIGR02655 261 FKDSIILATGATGTGKTLLVSKFLENACA--NKERAILFAYEE--SRAQLLRNA-YSWGIDFEEMEQQGLLKIICAYPES 335 (484)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEEeeC--CHHHHHHHH-HHcCCChHHHhhCCcEEEEEccccc
Confidence 35689999999999999999998776542 235667766554 345555553 4554421 11
Q ss_pred CCHHHHHHHHHHHHhcCCeEEEEEeCCC
Q 045699 232 GSESERAMMLCGQLKKGKKILFVLDNIW 259 (266)
Q Consensus 232 ~~~~~~~~~l~~~L~~~kr~LlvlDDvw 259 (266)
.+.++....+.+.+.+.+.-+||+|-+.
T Consensus 336 ~~~~~~~~~i~~~i~~~~~~~vvIDsi~ 363 (484)
T TIGR02655 336 AGLEDHLQIIKSEIADFKPARIAIDSLS 363 (484)
T ss_pred CChHHHHHHHHHHHHHcCCCEEEEcCHH
Confidence 2345667777777765355578899765
No 410
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=96.46 E-value=0.022 Score=55.30 Aligned_cols=27 Identities=26% Similarity=0.314 Sum_probs=23.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
+.-..++|+|..|+|||||++.+..-.
T Consensus 489 ~~G~~iaIvG~sGsGKSTLlklL~gl~ 515 (694)
T TIGR03375 489 RPGEKVAIIGRIGSGKSTLLKLLLGLY 515 (694)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456899999999999999999997653
No 411
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.45 E-value=0.02 Score=48.82 Aligned_cols=29 Identities=24% Similarity=0.089 Sum_probs=25.0
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 167 NPNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 167 ~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
..+...++|+|+.|+|||||.+.+.....
T Consensus 108 ~~~~~~~~i~g~~g~GKttl~~~l~~~~~ 136 (270)
T TIGR02858 108 NNRVLNTLIISPPQCGKTTLLRDLARILS 136 (270)
T ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhCccC
Confidence 34467899999999999999999998764
No 412
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.45 E-value=0.0019 Score=60.47 Aligned_cols=48 Identities=25% Similarity=0.435 Sum_probs=39.7
Q ss_pred CcccccchHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 147 GYEAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 147 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
...+++|.+..++.+...+.......+-|+|+.|+|||++|+.+++..
T Consensus 63 ~f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 63 SFDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred CHHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 355788988888888877766666778899999999999999998754
No 413
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=96.45 E-value=0.012 Score=53.06 Aligned_cols=46 Identities=24% Similarity=0.255 Sum_probs=34.6
Q ss_pred cccchHHHHHHHHHHhCC--------------CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 150 AFESRKSILNDALDALSN--------------PNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 150 ~~~gr~~~~~~l~~~l~~--------------~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
.++|.++.++.+.-.+.. ...+.|.++|+.|+|||++|+.+.....
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~ 72 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLAN 72 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 467877777766543321 1246899999999999999999998865
No 414
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=96.45 E-value=0.0025 Score=52.25 Aligned_cols=27 Identities=33% Similarity=0.434 Sum_probs=23.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
..-.+++|+|++|+|||||++.+..-.
T Consensus 26 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 26 RKGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 346799999999999999999997753
No 415
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.45 E-value=0.033 Score=53.14 Aligned_cols=48 Identities=23% Similarity=0.437 Sum_probs=40.6
Q ss_pred CcccccchHHHHHHHHHHhCCCCCcE-EEEEcCCCCcHHHHHHHHHHHh
Q 045699 147 GYEAFESRKSILNDALDALSNPNVDV-IGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 147 ~~~~~~gr~~~~~~l~~~l~~~~~~v-i~I~G~~G~GKTtLa~~v~~~~ 194 (266)
...+++|.+..++.|.+++...++.. +.++|+.|+||||+|+.+....
T Consensus 15 ~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l 63 (614)
T PRK14971 15 TFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTI 63 (614)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHh
Confidence 46678999999999999987766655 7899999999999999887765
No 416
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.44 E-value=0.0079 Score=51.33 Aligned_cols=25 Identities=40% Similarity=0.433 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 171 DVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 171 ~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
..|.|+|.+|+||||+|+.+.....
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~ 26 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLE 26 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHH
Confidence 4688999999999999999998765
No 417
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.44 E-value=0.019 Score=48.26 Aligned_cols=49 Identities=24% Similarity=0.339 Sum_probs=37.9
Q ss_pred cccccchHHHHH---HHHHHhCCC------CCcEEEEEcCCCCcHHHHHHHHHHHhcc
Q 045699 148 YEAFESRKSILN---DALDALSNP------NVDVIGLCGVGGIGKTTLAKIVCDQAKK 196 (266)
Q Consensus 148 ~~~~~gr~~~~~---~l~~~l~~~------~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 196 (266)
.++++|.+..+. -|++.|.++ ..+-|..+|+.|.|||-+|+.+.|..++
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kv 177 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKV 177 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCC
Confidence 455778876653 356667653 4688999999999999999999998763
No 418
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=96.44 E-value=0.0029 Score=52.04 Aligned_cols=26 Identities=35% Similarity=0.634 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
.-.+++|+|++|+|||||.+.+..-.
T Consensus 12 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 12 YHEHIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 45799999999999999999998764
No 419
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.44 E-value=0.0025 Score=48.59 Aligned_cols=23 Identities=39% Similarity=0.599 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 045699 172 VIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 172 vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
.|.|+|+.|+|||||++.+....
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcC
Confidence 37899999999999999998863
No 420
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.44 E-value=0.0033 Score=49.89 Aligned_cols=26 Identities=31% Similarity=0.374 Sum_probs=22.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
...|.|+|+.|+||||+++.+.+...
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcC
Confidence 45799999999999999999998753
No 421
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=96.44 E-value=0.0029 Score=50.42 Aligned_cols=26 Identities=23% Similarity=0.287 Sum_probs=23.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
..++.|+|++|+|||||++.+.....
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~~l~ 28 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALFS 28 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35899999999999999999998764
No 422
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.44 E-value=0.022 Score=46.64 Aligned_cols=23 Identities=35% Similarity=0.397 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhc
Q 045699 173 IGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 173 i~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
|.|+|++|+||||+|+.+.....
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g 24 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYG 24 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 67999999999999999987543
No 423
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=96.43 E-value=0.01 Score=53.79 Aligned_cols=47 Identities=21% Similarity=0.119 Sum_probs=34.4
Q ss_pred ccccchHHHHHHHHHHhC-------CC---------CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 149 EAFESRKSILNDALDALS-------NP---------NVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 149 ~~~~gr~~~~~~l~~~l~-------~~---------~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
..++|.+..++.+...+. .. ....+.++|+.|+|||+||+.+.....
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~ 133 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILD 133 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhC
Confidence 347888888877644331 10 235789999999999999999987653
No 424
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.43 E-value=0.003 Score=51.77 Aligned_cols=27 Identities=30% Similarity=0.492 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
..-.+++|+|++|+|||||++.+..-.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 24 EPGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356799999999999999999998753
No 425
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.43 E-value=0.0034 Score=49.85 Aligned_cols=25 Identities=24% Similarity=0.290 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
.++|.+.|+.|+||||+|+.+....
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3589999999999999999998874
No 426
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.43 E-value=0.0027 Score=48.98 Aligned_cols=23 Identities=35% Similarity=0.634 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 045699 172 VIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 172 vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
++.+.|+.|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 46789999999999999998864
No 427
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=96.43 E-value=0.003 Score=52.35 Aligned_cols=27 Identities=33% Similarity=0.459 Sum_probs=23.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
....+++|+|++|+|||||++.+..-.
T Consensus 34 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 34 KRGETIALIGESGSGKSTLLAILAGLD 60 (228)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 356899999999999999999998764
No 428
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.43 E-value=0.003 Score=51.53 Aligned_cols=26 Identities=46% Similarity=0.638 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
.-.+++|+|++|+|||||.+.+..-.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 25 AGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 46799999999999999999998764
No 429
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=96.42 E-value=0.021 Score=52.88 Aligned_cols=89 Identities=15% Similarity=0.230 Sum_probs=55.4
Q ss_pred CCcEEEEEcCCCCcHHHH-HHHHHHHhccccCCCe-EEEEEeCCCCC-HHHHHHHHHHHhcCC-------CCCCC-HHH-
Q 045699 169 NVDVIGLCGVGGIGKTTL-AKIVCDQAKKLKVCDE-VVFVEVSRTPD-VKRIQGDVADQLSLN-------ICEGS-ESE- 236 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtL-a~~v~~~~~~~~~f~~-~~wv~v~~~~~-~~~~~~~i~~~~~~~-------~~~~~-~~~- 236 (266)
+-..++|+|..|+|||+| +..+.+.. .-+. ++++.+++..+ ..++...+...-... ..+.+ ...
T Consensus 161 rGQr~~Ifg~~g~GKt~lal~~i~~~~----~~dv~~V~~~IGer~~ev~e~~~~~~~~~~l~~tvvv~atsd~p~~~r~ 236 (502)
T PRK09281 161 RGQRELIIGDRQTGKTAIAIDTIINQK----GKDVICIYVAIGQKASTVAQVVRKLEEHGAMEYTIVVAATASDPAPLQY 236 (502)
T ss_pred cCcEEEeecCCCCCchHHHHHHHHHhc----CCCeEEEEEEecCChHHHHHHHHHHhhcCCccceEEEEeCCCCCHHHHH
Confidence 567899999999999999 56666643 2344 48888887654 344555554432221 11111 111
Q ss_pred ----HHHHHHHHHhc-CCeEEEEEeCCCCC
Q 045699 237 ----RAMMLCGQLKK-GKKILFVLDNIWTS 261 (266)
Q Consensus 237 ----~~~~l~~~L~~-~kr~LlvlDDvw~~ 261 (266)
.+..+.+++++ |+..|||+||+...
T Consensus 237 ~a~~~a~tiAEyfrd~G~~VLli~DdlTr~ 266 (502)
T PRK09281 237 LAPYAGCAMGEYFMDNGKDALIVYDDLSKQ 266 (502)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEecCchHH
Confidence 13345666655 59999999998754
No 430
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.42 E-value=0.015 Score=54.89 Aligned_cols=26 Identities=27% Similarity=0.427 Sum_probs=23.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
...+.|+|..|+|||.|++.+.+...
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~~a~ 339 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGHYAR 339 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 34589999999999999999999865
No 431
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.42 E-value=0.0025 Score=49.94 Aligned_cols=22 Identities=36% Similarity=0.567 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 045699 173 IGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 173 i~I~G~~G~GKTtLa~~v~~~~ 194 (266)
|.|+|+.|+||||+|+.+....
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999998875
No 432
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.42 E-value=0.0029 Score=51.98 Aligned_cols=26 Identities=31% Similarity=0.607 Sum_probs=23.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
.. .+++|+|++|+|||||++.+..-.
T Consensus 22 ~~-e~~~i~G~nGsGKSTLl~~l~G~~ 47 (214)
T cd03297 22 NE-EVTGIFGASGAGKSTLLRCIAGLE 47 (214)
T ss_pred cc-eeEEEECCCCCCHHHHHHHHhCCC
Confidence 46 999999999999999999998764
No 433
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=96.42 E-value=0.003 Score=52.87 Aligned_cols=27 Identities=22% Similarity=0.393 Sum_probs=23.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
..-.+++|+|++|+|||||++.+..-.
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 26 NPGEFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 346799999999999999999997653
No 434
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.41 E-value=0.0021 Score=54.90 Aligned_cols=35 Identities=31% Similarity=0.319 Sum_probs=25.8
Q ss_pred HHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 159 NDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 159 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
..+++.+.. .-+-+.++|+.|+|||++++......
T Consensus 23 ~~ll~~l~~-~~~pvLl~G~~GtGKT~li~~~l~~l 57 (272)
T PF12775_consen 23 SYLLDLLLS-NGRPVLLVGPSGTGKTSLIQNFLSSL 57 (272)
T ss_dssp HHHHHHHHH-CTEEEEEESSTTSSHHHHHHHHHHCS
T ss_pred HHHHHHHHH-cCCcEEEECCCCCchhHHHHhhhccC
Confidence 344444433 35677999999999999999988754
No 435
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.41 E-value=0.026 Score=47.90 Aligned_cols=41 Identities=24% Similarity=0.369 Sum_probs=30.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCC
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRT 211 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~ 211 (266)
...++.|.|.+|+|||+|+.++..... ..-..++|++...+
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a--~~Ge~vlyis~Ee~ 75 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQA--SRGNPVLFVTVESP 75 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH--hCCCcEEEEEecCC
Confidence 468999999999999999998755432 12357788887643
No 436
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=96.41 E-value=0.042 Score=51.29 Aligned_cols=49 Identities=22% Similarity=0.323 Sum_probs=40.5
Q ss_pred CCcccccchHHHHHHHHHHhCCCCCc-EEEEEcCCCCcHHHHHHHHHHHh
Q 045699 146 EGYEAFESRKSILNDALDALSNPNVD-VIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 146 ~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
....+++|.+..++.|...+...++. ...++|+.|+||||+|+.+....
T Consensus 11 ~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L 60 (535)
T PRK08451 11 KHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARAL 60 (535)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHh
Confidence 34667899998889999888766665 55899999999999999888775
No 437
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.41 E-value=0.0076 Score=46.19 Aligned_cols=35 Identities=29% Similarity=0.415 Sum_probs=26.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCC
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRT 211 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~ 211 (266)
..-|.|.|.+|+|||||+..+...... -|+++|.-
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~~-------~~i~isd~ 41 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTGL-------EYIEISDL 41 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhCC-------ceEehhhH
Confidence 456889999999999999999876442 26666643
No 438
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.41 E-value=0.0029 Score=46.04 Aligned_cols=23 Identities=43% Similarity=0.540 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhc
Q 045699 173 IGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 173 i~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
|-|+|++|+|||+||+.+..+..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 45899999999999999877754
No 439
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=96.40 E-value=0.02 Score=50.43 Aligned_cols=23 Identities=35% Similarity=0.606 Sum_probs=20.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhc
Q 045699 173 IGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 173 i~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
+.+.|+.|+||||+++.+.+...
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~ 24 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLR 24 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999998765
No 440
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.40 E-value=0.013 Score=56.96 Aligned_cols=44 Identities=16% Similarity=0.256 Sum_probs=33.6
Q ss_pred ccchHHHHHHHHHHhC-------C--CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 151 FESRKSILNDALDALS-------N--PNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 151 ~~gr~~~~~~l~~~l~-------~--~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
++|.+..++.|.+.+. + .....+.++|+.|+|||+||+.+....
T Consensus 460 ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l 512 (758)
T PRK11034 460 VFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_pred EeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh
Confidence 5677777777776653 1 124578899999999999999998766
No 441
>PRK13695 putative NTPase; Provisional
Probab=96.40 E-value=0.005 Score=48.86 Aligned_cols=24 Identities=42% Similarity=0.632 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 172 VIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 172 vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
.++|.|.+|+|||||++.+++...
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~ 25 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLK 25 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999988764
No 442
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=96.40 E-value=0.0032 Score=51.87 Aligned_cols=27 Identities=33% Similarity=0.507 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
..-.+++|+|++|+|||||++.+..-.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 26 YKGEIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 346799999999999999999998764
No 443
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=96.40 E-value=0.031 Score=51.22 Aligned_cols=92 Identities=22% Similarity=0.259 Sum_probs=60.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhcccc--CCCeEEEEEeCCCC-CHHHHHHHHHHHhcC-------CCCCCC-H---
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLK--VCDEVVFVEVSRTP-DVKRIQGDVADQLSL-------NICEGS-E--- 234 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~--~f~~~~wv~v~~~~-~~~~~~~~i~~~~~~-------~~~~~~-~--- 234 (266)
.-..++|+|..|+|||||+..+.+.....+ .--.++++.+++.. ...+++.++...-.. ...+.+ .
T Consensus 142 ~GQR~gIfgg~G~GKs~L~~~ia~~~~~d~~~~~~v~V~~~iGeRgrEv~e~~~~~~~~~~l~rtvvV~atsd~p~~~R~ 221 (460)
T PRK04196 142 RGQKLPIFSGSGLPHNELAAQIARQAKVLGEEENFAVVFAAMGITFEEANFFMEDFEETGALERSVVFLNLADDPAIERI 221 (460)
T ss_pred CCCEEEeeCCCCCCccHHHHHHHHhhhhccCCCceEEEEEEeccccHHHHHHHHHHHhcCCcceEEEEEEcCCCCHHHHH
Confidence 567899999999999999999988754321 11167788887654 345566666553222 111122 1
Q ss_pred --HHHHHHHHHHHh--cCCeEEEEEeCCCC
Q 045699 235 --SERAMMLCGQLK--KGKKILFVLDNIWT 260 (266)
Q Consensus 235 --~~~~~~l~~~L~--~~kr~LlvlDDvw~ 260 (266)
......+.++++ .|++.||++||+..
T Consensus 222 ~a~~~a~tiAEyfr~d~G~~VLli~DslTR 251 (460)
T PRK04196 222 LTPRMALTAAEYLAFEKGMHVLVILTDMTN 251 (460)
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEcChHH
Confidence 122445788887 37999999999864
No 444
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=96.40 E-value=0.0034 Score=52.04 Aligned_cols=27 Identities=30% Similarity=0.548 Sum_probs=23.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
..-.+++|+|++|+|||||++.+..-.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 24 PKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 356899999999999999999998765
No 445
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.39 E-value=0.011 Score=48.57 Aligned_cols=63 Identities=21% Similarity=0.187 Sum_probs=37.7
Q ss_pred HHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhc-----cccCCCeEEEEEeCCCCCHHHHHHHHHH
Q 045699 159 NDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAK-----KLKVCDEVVFVEVSRTPDVKRIQGDVAD 223 (266)
Q Consensus 159 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~-----~~~~f~~~~wv~v~~~~~~~~~~~~i~~ 223 (266)
+.+...+.... +..|.|++|.||||++..+....- ....-...+-++...+.....++..+.+
T Consensus 8 ~Ai~~~~~~~~--~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 8 EAIQSALSSNG--ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp HHHHHHCTSSE---EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCC--CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 44444444322 788999999999976666655541 1134456666666666677777777766
No 446
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=96.39 E-value=0.0034 Score=46.11 Aligned_cols=23 Identities=35% Similarity=0.598 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhc
Q 045699 173 IGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 173 i~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
|.|+|..|+|||||.+.+.+...
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS-
T ss_pred EEEECcCCCCHHHHHHHHhcCCC
Confidence 78999999999999999987654
No 447
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=96.39 E-value=0.051 Score=43.70 Aligned_cols=26 Identities=31% Similarity=0.409 Sum_probs=23.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcc
Q 045699 171 DVIGLCGVGGIGKTTLAKIVCDQAKK 196 (266)
Q Consensus 171 ~vi~I~G~~G~GKTtLa~~v~~~~~~ 196 (266)
..|.|.|..|+||||+++.+.+....
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~~ 29 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQE 29 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 57999999999999999999988653
No 448
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.39 E-value=0.016 Score=49.24 Aligned_cols=57 Identities=26% Similarity=0.290 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHH
Q 045699 155 KSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQ 218 (266)
Q Consensus 155 ~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~ 218 (266)
...++.+..++.. -..+.+.|+.|+|||+||+.+..... .....+++....+..+++
T Consensus 8 ~~l~~~~l~~l~~--g~~vLL~G~~GtGKT~lA~~la~~lg-----~~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 8 KRVTSRALRYLKS--GYPVHLRGPAGTGKTTLAMHVARKRD-----RPVMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHHHhc--CCeEEEEcCCCCCHHHHHHHHHHHhC-----CCEEEEeCCccCCHHHHh
Confidence 3445556666543 34667899999999999999987432 234455555555555443
No 449
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.39 E-value=0.0033 Score=50.82 Aligned_cols=26 Identities=19% Similarity=0.396 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
.-.+++|+|.+|+|||||++.+....
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 25 PSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 46799999999999999999998864
No 450
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.39 E-value=0.0033 Score=48.50 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=20.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhc
Q 045699 173 IGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 173 i~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
|.|+|+.|+||||+|+.+.....
T Consensus 2 i~l~G~~GsGKstla~~la~~l~ 24 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALG 24 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999988754
No 451
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.39 E-value=0.0033 Score=51.80 Aligned_cols=26 Identities=35% Similarity=0.524 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
.-.+++|+|++|+|||||++.+....
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 25 RGEIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 46899999999999999999998763
No 452
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.39 E-value=0.01 Score=57.17 Aligned_cols=103 Identities=19% Similarity=0.302 Sum_probs=62.4
Q ss_pred cccccchHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccC----CCeEEEEEeCCCCCHHHHHHHHHH
Q 045699 148 YEAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKV----CDEVVFVEVSRTPDVKRIQGDVAD 223 (266)
Q Consensus 148 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~----f~~~~wv~v~~~~~~~~~~~~i~~ 223 (266)
.++++||+.+++.+++.|....-.--.++|.+|+|||.++.-+....-..+- =+.+++. .++-.+.
T Consensus 169 lDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~s-----LD~g~Lv----- 238 (786)
T COG0542 169 LDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYS-----LDLGSLV----- 238 (786)
T ss_pred CCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEE-----ecHHHHh-----
Confidence 5678999999999999997544444456899999999977666655321110 1122211 1111111
Q ss_pred HhcCCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCCC
Q 045699 224 QLSLNICEGSESERAMMLCGQLKKGKKILFVLDNIWTSL 262 (266)
Q Consensus 224 ~~~~~~~~~~~~~~~~~l~~~L~~~kr~LlvlDDvw~~~ 262 (266)
-|..+ -...+++...+.+.++..++.+|++|++.+-.
T Consensus 239 -AGaky-RGeFEeRlk~vl~ev~~~~~vILFIDEiHtiV 275 (786)
T COG0542 239 -AGAKY-RGEFEERLKAVLKEVEKSKNVILFIDEIHTIV 275 (786)
T ss_pred -ccccc-cCcHHHHHHHHHHHHhcCCCeEEEEechhhhc
Confidence 01111 23455666666666665368999999987643
No 453
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=96.38 E-value=0.0059 Score=47.62 Aligned_cols=24 Identities=33% Similarity=0.434 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 172 VIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 172 vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
+++|+|+.|+|||||+..+....+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~ 24 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALK 24 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999999875
No 454
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.031 Score=53.48 Aligned_cols=94 Identities=19% Similarity=0.231 Sum_probs=59.6
Q ss_pred cccccchHHHHHHHHHHhC---------CC---CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHH
Q 045699 148 YEAFESRKSILNDALDALS---------NP---NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVK 215 (266)
Q Consensus 148 ~~~~~gr~~~~~~l~~~l~---------~~---~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~ 215 (266)
..++.|.++.+..|.+-+. .. +..=|.++|++|.|||-||++|.-.-.. .|++|-.+
T Consensus 671 WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL-------~FlSVKGP---- 739 (953)
T KOG0736|consen 671 WDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSL-------NFLSVKGP---- 739 (953)
T ss_pred hhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhcee-------eEEeecCH----
Confidence 4567889998888887653 12 2345778999999999999999886432 24555433
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCC
Q 045699 216 RIQGDVADQLSLNICEGSESERAMMLCGQLKKGKKILFVLDNIWTS 261 (266)
Q Consensus 216 ~~~~~i~~~~~~~~~~~~~~~~~~~l~~~L~~~kr~LlvlDDvw~~ 261 (266)
++++-- -+.+++.+.....+.-.. +.|+|++|++.+.
T Consensus 740 ELLNMY--------VGqSE~NVR~VFerAR~A-~PCVIFFDELDSl 776 (953)
T KOG0736|consen 740 ELLNMY--------VGQSEENVREVFERARSA-APCVIFFDELDSL 776 (953)
T ss_pred HHHHHH--------hcchHHHHHHHHHHhhcc-CCeEEEecccccc
Confidence 222110 122333333333333444 9999999998764
No 455
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=96.38 E-value=0.0033 Score=51.81 Aligned_cols=27 Identities=22% Similarity=0.457 Sum_probs=23.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
....+++|+|++|+|||||.+.+....
T Consensus 29 ~~G~~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 29 GKGEIVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356799999999999999999997653
No 456
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.38 E-value=0.0033 Score=52.55 Aligned_cols=27 Identities=26% Similarity=0.396 Sum_probs=23.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
..-.+++|+|++|+|||||++.+..-.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 25 NPGEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 356799999999999999999997653
No 457
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.38 E-value=0.0068 Score=55.53 Aligned_cols=50 Identities=18% Similarity=0.157 Sum_probs=39.1
Q ss_pred cccchHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCC
Q 045699 150 AFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCD 201 (266)
Q Consensus 150 ~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~ 201 (266)
.++|++..++.+...+. .-..+.|.|++|+|||+||+.+.........|.
T Consensus 21 ~i~gre~vI~lll~aal--ag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~ 70 (498)
T PRK13531 21 GLYERSHAIRLCLLAAL--SGESVFLLGPPGIAKSLIARRLKFAFQNARAFE 70 (498)
T ss_pred hccCcHHHHHHHHHHHc--cCCCEEEECCCChhHHHHHHHHHHHhcccCcce
Confidence 57889888888877764 346788999999999999999998764333444
No 458
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.38 E-value=0.027 Score=53.36 Aligned_cols=27 Identities=26% Similarity=0.372 Sum_probs=23.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
+....++|+|+.|+|||||++.+..-.
T Consensus 364 ~~G~~~aivG~sGsGKSTL~~ll~g~~ 390 (574)
T PRK11160 364 KAGEKVALLGRTGCGKSTLLQLLTRAW 390 (574)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999999997754
No 459
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.38 E-value=0.011 Score=45.56 Aligned_cols=21 Identities=33% Similarity=0.368 Sum_probs=19.1
Q ss_pred EEcCCCCcHHHHHHHHHHHhc
Q 045699 175 LCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 175 I~G~~G~GKTtLa~~v~~~~~ 195 (266)
|+|++|+||||+|+.+.....
T Consensus 1 i~G~PgsGK~t~~~~la~~~~ 21 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYG 21 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHT
T ss_pred CcCCCCCChHHHHHHHHHhcC
Confidence 789999999999999999754
No 460
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.38 E-value=0.0033 Score=52.56 Aligned_cols=27 Identities=33% Similarity=0.630 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
..-.+++|+|++|+|||||++.+..-.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 26 PSGELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356799999999999999999998764
No 461
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=96.37 E-value=0.003 Score=51.76 Aligned_cols=27 Identities=30% Similarity=0.494 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
..-.+++|+|.+|+|||||++.+..-.
T Consensus 25 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 25 SAGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 356799999999999999999998764
No 462
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.37 E-value=0.0018 Score=52.04 Aligned_cols=21 Identities=29% Similarity=0.197 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 045699 172 VIGLCGVGGIGKTTLAKIVCD 192 (266)
Q Consensus 172 vi~I~G~~G~GKTtLa~~v~~ 192 (266)
++.|.|++|.||||+.+.+.-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 467999999999999999973
No 463
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.37 E-value=0.017 Score=48.10 Aligned_cols=28 Identities=32% Similarity=0.558 Sum_probs=24.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
....+.+++|.+|+||||..+++.+-..
T Consensus 26 ~~G~i~GllG~NGAGKTTtfRmILglle 53 (300)
T COG4152 26 PPGEIFGLLGPNGAGKTTTFRMILGLLE 53 (300)
T ss_pred cCCeEEEeecCCCCCccchHHHHhccCC
Confidence 4568999999999999999999988654
No 464
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.36 E-value=0.0027 Score=51.94 Aligned_cols=23 Identities=43% Similarity=0.683 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 045699 172 VIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 172 vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
+++|+|++|+|||||++.+..-.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCC
Confidence 89999999999999999998653
No 465
>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.35 E-value=0.031 Score=49.90 Aligned_cols=88 Identities=20% Similarity=0.339 Sum_probs=61.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeC-CCCCHHHHHHHHHHHhcCC--------CCCCC-----
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVS-RTPDVKRIQGDVADQLSLN--------ICEGS----- 233 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~-~~~~~~~~~~~i~~~~~~~--------~~~~~----- 233 (266)
..-..++|+.-.|+|||||.-++.+.. .+|..+-.-+. ..-...++..+.+..-+.. .+...
T Consensus 161 G~GQRiGIFAgsGVGKStLLgMiar~t----~aDv~ViaLIGERGREVrEFIE~~Lg~egl~rsViVvATSD~s~l~R~~ 236 (441)
T COG1157 161 GKGQRIGIFAGSGVGKSTLLGMIARNT----EADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESALMRLK 236 (441)
T ss_pred ccCceeEEEecCCCcHHHHHHHHhccc----cCCEEEEEEeeccchhHHHHHHHhcchhhccceEEEEECCCCCHHHHHH
Confidence 456899999999999999999999864 46666555554 3445667777776655442 12222
Q ss_pred HHHHHHHHHHHHhc-CCeEEEEEeCCC
Q 045699 234 ESERAMMLCGQLKK-GKKILFVLDNIW 259 (266)
Q Consensus 234 ~~~~~~~l~~~L~~-~kr~LlvlDDvw 259 (266)
....+..+.+|+++ ||+.|+++|-+.
T Consensus 237 aa~~At~IAEyFRDqG~~VLL~mDSlT 263 (441)
T COG1157 237 AAFTATTIAEYFRDQGKRVLLIMDSLT 263 (441)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEeecHH
Confidence 22345678888886 799999999774
No 466
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=96.34 E-value=0.0034 Score=51.92 Aligned_cols=27 Identities=33% Similarity=0.543 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
..-.+++|+|++|+|||||.+.+....
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 29 KKGETLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356799999999999999999998764
No 467
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=96.34 E-value=0.0036 Score=52.24 Aligned_cols=26 Identities=27% Similarity=0.402 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
.-.+++|+|++|+|||||++.+....
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 26 PGEFVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 56899999999999999999998653
No 468
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=96.34 E-value=0.0032 Score=51.25 Aligned_cols=26 Identities=27% Similarity=0.359 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
.-.+++|+|++|+|||||++.+....
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 23 KGKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 45789999999999999999998764
No 469
>PRK14528 adenylate kinase; Provisional
Probab=96.34 E-value=0.011 Score=47.44 Aligned_cols=25 Identities=40% Similarity=0.581 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 171 DVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 171 ~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
+.|.|.|++|+||||+|+.+.....
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~ 26 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLS 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4688999999999999999977653
No 470
>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.
Probab=96.34 E-value=0.033 Score=51.56 Aligned_cols=90 Identities=17% Similarity=0.264 Sum_probs=57.5
Q ss_pred CCCcEEEEEcCCCCcHHHHH-HHHHHHhccccCCCe-EEEEEeCCCCC-HHHHHHHHHHHhcCC-------CCCCC-HH-
Q 045699 168 PNVDVIGLCGVGGIGKTTLA-KIVCDQAKKLKVCDE-VVFVEVSRTPD-VKRIQGDVADQLSLN-------ICEGS-ES- 235 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa-~~v~~~~~~~~~f~~-~~wv~v~~~~~-~~~~~~~i~~~~~~~-------~~~~~-~~- 235 (266)
.+-..++|+|..|+|||||| ..+.+.. ..+. ++++.+++..+ ..++...+...-... ..+.+ ..
T Consensus 159 grGQr~~I~g~~g~GKt~Lal~~i~~~~----~~dv~~V~~~IGer~rev~e~~~~~~~~~~l~~tvvV~atsd~p~~~r 234 (501)
T TIGR00962 159 GRGQRELIIGDRQTGKTAVAIDTIINQK----DSDVYCVYVAIGQKASTVAQVVRKLEEHGAMDYTIVVAATASDSASLQ 234 (501)
T ss_pred ccCCEEEeecCCCCCccHHHHHHHHhhc----CCCeEEEEEEccCChHHHHHHHHHHHhcCccceeEEEEecCCCCHHHH
Confidence 35678999999999999995 6777753 2355 48888887643 445555555432221 11111 11
Q ss_pred ----HHHHHHHHHHhc-CCeEEEEEeCCCCC
Q 045699 236 ----ERAMMLCGQLKK-GKKILFVLDNIWTS 261 (266)
Q Consensus 236 ----~~~~~l~~~L~~-~kr~LlvlDDvw~~ 261 (266)
.....+.+++++ |+..|||+||+...
T Consensus 235 ~~a~~~a~aiAEyfrd~G~~VLlv~Ddltr~ 265 (501)
T TIGR00962 235 YLAPYTGCTMAEYFRDNGKHALIIYDDLSKH 265 (501)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEecchHHH
Confidence 123345666665 69999999998654
No 471
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=96.34 E-value=0.027 Score=53.29 Aligned_cols=27 Identities=26% Similarity=0.394 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
+....++|+|..|+|||||++.+....
T Consensus 356 ~~G~~v~IvG~sGsGKSTLl~lL~gl~ 382 (571)
T TIGR02203 356 EPGETVALVGRSGSGKSTLVNLIPRFY 382 (571)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 457899999999999999999997664
No 472
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=96.33 E-value=0.0045 Score=50.62 Aligned_cols=30 Identities=30% Similarity=0.399 Sum_probs=26.2
Q ss_pred hCCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 165 LSNPNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 165 l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
+...++++|+++|+.|+|||||...+....
T Consensus 17 ~~~~~~~~i~~~G~~gsGKTTli~~l~~~~ 46 (207)
T TIGR00073 17 LDKHGLVVLNFMSSPGSGKTTLIEKLIDNL 46 (207)
T ss_pred hhhcCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 445679999999999999999999998764
No 473
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.33 E-value=0.017 Score=57.11 Aligned_cols=46 Identities=22% Similarity=0.334 Sum_probs=34.6
Q ss_pred ccccchHHHHHHHHHHhC-------CC--CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 149 EAFESRKSILNDALDALS-------NP--NVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 149 ~~~~gr~~~~~~l~~~l~-------~~--~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
..++|.+..++.+...+. ++ ....+.++|+.|+|||+||+.+.+..
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l 563 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYF 563 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 446788888888876653 11 23467789999999999999998764
No 474
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.32 E-value=0.0038 Score=50.89 Aligned_cols=27 Identities=30% Similarity=0.487 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
....+++|+|.+|+|||||++.+....
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (204)
T PRK13538 25 NAGELVQIEGPNGAGKTSLLRILAGLA 51 (204)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356799999999999999999998764
No 475
>PRK13947 shikimate kinase; Provisional
Probab=96.32 E-value=0.0037 Score=49.30 Aligned_cols=24 Identities=42% Similarity=0.436 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 172 VIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 172 vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
.|.|+|+.|+||||+++.+.+...
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg 26 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLS 26 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999998764
No 476
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=96.32 E-value=0.0032 Score=51.94 Aligned_cols=26 Identities=35% Similarity=0.514 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
.-.+++|+|++|+|||||++.+..-.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 25 EGEIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 56899999999999999999997653
No 477
>PLN03232 ABC transporter C family member; Provisional
Probab=96.32 E-value=0.028 Score=59.13 Aligned_cols=28 Identities=25% Similarity=0.406 Sum_probs=24.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
+....++|+|+.|+|||||++.+.....
T Consensus 641 ~~Ge~vaIvG~sGSGKSTLl~lLlG~~~ 668 (1495)
T PLN03232 641 PVGSLVAIVGGTGEGKTSLISAMLGELS 668 (1495)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCc
Confidence 4568999999999999999999988654
No 478
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=96.32 E-value=0.031 Score=52.96 Aligned_cols=27 Identities=30% Similarity=0.602 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
.....++|+|++|+|||||++.+..-.
T Consensus 339 ~~G~~~~ivG~sGsGKSTLl~ll~g~~ 365 (569)
T PRK10789 339 KPGQMLGICGPTGSGKSTLLSLIQRHF 365 (569)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 457899999999999999999997653
No 479
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=96.32 E-value=0.025 Score=53.24 Aligned_cols=27 Identities=26% Similarity=0.463 Sum_probs=23.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
+....++|+|++|+|||||++.+..-.
T Consensus 342 ~~G~~~~ivG~sGsGKSTL~~ll~g~~ 368 (544)
T TIGR01842 342 QAGEALAIIGPSGSGKSTLARLIVGIW 368 (544)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999997764
No 480
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.31 E-value=0.0049 Score=47.97 Aligned_cols=27 Identities=41% Similarity=0.383 Sum_probs=23.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcc
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQAKK 196 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~~~~ 196 (266)
..+|-|.|..|+||||||+.+......
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~ 28 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFA 28 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 357889999999999999999998763
No 481
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.31 E-value=0.022 Score=47.93 Aligned_cols=93 Identities=18% Similarity=0.273 Sum_probs=56.9
Q ss_pred cccccchHHHHHHHHHHhC----C---------CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCH
Q 045699 148 YEAFESRKSILNDALDALS----N---------PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDV 214 (266)
Q Consensus 148 ~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~ 214 (266)
+.++-|-.+.+++|.+... + +..+=|.++|+.|.|||-+|+.|.|.-. .+|+.|-.+
T Consensus 176 y~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtd-------acfirvigs--- 245 (435)
T KOG0729|consen 176 YSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTD-------ACFIRVIGS--- 245 (435)
T ss_pred cccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccC-------ceEEeehhH---
Confidence 4556677777776655432 1 3456788999999999999999999643 223333221
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCC
Q 045699 215 KRIQGDVADQLSLNICEGSESERAMMLCGQLKKGKKILFVLDNIWT 260 (266)
Q Consensus 215 ~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~L~~~kr~LlvlDDvw~ 260 (266)
++.+.- ......+...|.+.-+..|-|+|++|+|.-
T Consensus 246 -----elvqky-----vgegarmvrelf~martkkaciiffdeida 281 (435)
T KOG0729|consen 246 -----ELVQKY-----VGEGARMVRELFEMARTKKACIIFFDEIDA 281 (435)
T ss_pred -----HHHHHH-----hhhhHHHHHHHHHHhcccceEEEEeecccc
Confidence 222211 112234455555555554789999998853
No 482
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.30 E-value=0.0067 Score=56.39 Aligned_cols=74 Identities=22% Similarity=0.164 Sum_probs=45.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcC
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNICEGSESERAMMLCGQLKKG 248 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~L~~~ 248 (266)
..+.+-++|+.|+|||.||+.+.+... .+|-.+ ... .++ . .+-..+...+........+.
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~--~~fi~v-----~~~----~l~----s----k~vGesek~ir~~F~~A~~~- 334 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESR--SRFISV-----KGS----ELL----S----KWVGESEKNIRELFEKARKL- 334 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCC--CeEEEe-----eCH----HHh----c----cccchHHHHHHHHHHHHHcC-
Confidence 456899999999999999999999654 233222 211 111 1 11122223333344444555
Q ss_pred CeEEEEEeCCCCCC
Q 045699 249 KKILFVLDNIWTSL 262 (266)
Q Consensus 249 kr~LlvlDDvw~~~ 262 (266)
..+.|++|++.+-.
T Consensus 335 ~p~iiFiDEiDs~~ 348 (494)
T COG0464 335 APSIIFIDEIDSLA 348 (494)
T ss_pred CCcEEEEEchhhhh
Confidence 88999999987654
No 483
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=96.29 E-value=0.016 Score=54.75 Aligned_cols=26 Identities=38% Similarity=0.681 Sum_probs=23.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
+....++|+|++|+|||||++.+..-
T Consensus 366 ~~G~~~aivG~sGsGKSTl~~ll~g~ 391 (555)
T TIGR01194 366 AQGDIVFIVGENGCGKSTLAKLFCGL 391 (555)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999999999664
No 484
>PRK14530 adenylate kinase; Provisional
Probab=96.29 E-value=0.0041 Score=51.17 Aligned_cols=25 Identities=28% Similarity=0.290 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 171 DVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 171 ~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
..|.|+|+.|+||||+++.+.....
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999987653
No 485
>PRK13975 thymidylate kinase; Provisional
Probab=96.29 E-value=0.0042 Score=50.10 Aligned_cols=25 Identities=36% Similarity=0.569 Sum_probs=23.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 171 DVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 171 ~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
..|.|.|+.|+||||+++.+.....
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~ 27 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLN 27 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999999875
No 486
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.29 E-value=0.0035 Score=52.13 Aligned_cols=27 Identities=30% Similarity=0.610 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
..-.+++|+|++|+|||||++.+..-.
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 29 PKGEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356799999999999999999997764
No 487
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.28 E-value=0.041 Score=47.86 Aligned_cols=45 Identities=18% Similarity=0.182 Sum_probs=34.3
Q ss_pred ccchHHHHHHHHHHhC-CCCCcE-EEEEcCCCCcHHHHHHHHHHHhc
Q 045699 151 FESRKSILNDALDALS-NPNVDV-IGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 151 ~~gr~~~~~~l~~~l~-~~~~~v-i~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
+++-+.....+..+.. ..+... +.++|+.|+||||+|..+.+..-
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~ 49 (325)
T COG0470 3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELL 49 (325)
T ss_pred cccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHh
Confidence 3455556667777765 445666 99999999999999999988754
No 488
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=96.28 E-value=0.024 Score=53.08 Aligned_cols=27 Identities=30% Similarity=0.505 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
+....++|+|+.|+|||||++.+..-.
T Consensus 346 ~~G~~~~ivG~sGsGKSTL~~ll~g~~ 372 (529)
T TIGR02857 346 PPGERVALVGPSGAGKSTLLNLLLGFV 372 (529)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999999997654
No 489
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.28 E-value=0.013 Score=46.61 Aligned_cols=25 Identities=32% Similarity=0.543 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
.-..++|+|-+|+||+|||+++..-
T Consensus 38 ~~QTlaiIG~NGSGKSTLakMlaGm 62 (267)
T COG4167 38 EGQTLAIIGENGSGKSTLAKMLAGM 62 (267)
T ss_pred CCcEEEEEccCCCcHhHHHHHHhcc
Confidence 4578999999999999999999654
No 490
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=96.28 E-value=0.0041 Score=51.51 Aligned_cols=27 Identities=33% Similarity=0.379 Sum_probs=23.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
..-.+++|+|++|+|||||++.+....
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (225)
T PRK10247 31 RAGEFKLITGPSGCGKSTLLKIVASLI 57 (225)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 356799999999999999999998764
No 491
>PRK02118 V-type ATP synthase subunit B; Provisional
Probab=96.27 E-value=0.04 Score=49.98 Aligned_cols=89 Identities=18% Similarity=0.209 Sum_probs=58.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCH-HHHHHHHHHHhcC-------CC-CCCCHH----
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDV-KRIQGDVADQLSL-------NI-CEGSES---- 235 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~-~~~~~~i~~~~~~-------~~-~~~~~~---- 235 (266)
.-..++|+|-.|+|||+|+.++.+..+ -+.++++.++..... .++..++...-.. .. +.....
T Consensus 139 rGQkigIF~gaGvgk~~L~~~ia~~~~----~~v~Vfa~iGeR~rE~~ef~~~~~~~~~l~rtvlv~~~adep~~~R~~~ 214 (436)
T PRK02118 139 ESQKIPIFSVSGEPYNALLARIALQAE----ADIIILGGMGLTFDDYLFFKDTFENAGALDRTVMFIHTASDPPVECLLV 214 (436)
T ss_pred cCCEEEEEeCCCCCHHHHHHHHHHhhC----CCeEEEEEeccchhHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHH
Confidence 467899999999999999999988653 256788888876543 3444444433221 11 111221
Q ss_pred -HHHHHHHHHHhc-C-CeEEEEEeCCCCC
Q 045699 236 -ERAMMLCGQLKK-G-KKILFVLDNIWTS 261 (266)
Q Consensus 236 -~~~~~l~~~L~~-~-kr~LlvlDDvw~~ 261 (266)
..+..+.+++++ + +..|+++||+.+.
T Consensus 215 ~~~AltiAEyfrd~g~~~VLli~DdlTr~ 243 (436)
T PRK02118 215 PDMALAVAEKFALEGKKKVLVLLTDMTNF 243 (436)
T ss_pred HHHHHHHHHHHHhcCCCCEEEeccCchHH
Confidence 224456777876 3 8999999998764
No 492
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=96.27 E-value=0.0041 Score=51.76 Aligned_cols=27 Identities=22% Similarity=0.432 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
..-.+++|+|++|+|||||++.+..-.
T Consensus 33 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 33 GEGEMMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 346799999999999999999998764
No 493
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=96.27 E-value=0.0037 Score=51.97 Aligned_cols=26 Identities=31% Similarity=0.510 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
.-.+++|+|.+|+|||||++.+..-.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 25 QGEIVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 46799999999999999999998753
No 494
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=96.26 E-value=0.019 Score=46.70 Aligned_cols=23 Identities=48% Similarity=0.705 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHH
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCD 192 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~ 192 (266)
..+|+|.|+.|+||||.|+.+-+
T Consensus 2 ~~iIglTG~igsGKStva~~~~~ 24 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE 24 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH
Confidence 46899999999999999998877
No 495
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=96.26 E-value=0.0042 Score=51.65 Aligned_cols=27 Identities=33% Similarity=0.542 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
.-.+++|+|.+|+|||||++.+..-..
T Consensus 10 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 36 (230)
T TIGR01184 10 QGEFISLIGHSGCGKSTLLNLISGLAQ 36 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 457999999999999999999987643
No 496
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=96.25 E-value=0.0038 Score=51.98 Aligned_cols=26 Identities=35% Similarity=0.507 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
.-.+++|+|++|+|||||++.+..-.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 25 PGEIHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 46799999999999999999998753
No 497
>PRK05439 pantothenate kinase; Provisional
Probab=96.24 E-value=0.024 Score=49.24 Aligned_cols=28 Identities=25% Similarity=0.366 Sum_probs=24.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
...-+|+|.|..|+||||+|+.+.....
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~ 111 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLS 111 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567999999999999999999987653
No 498
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=96.24 E-value=0.0045 Score=50.68 Aligned_cols=26 Identities=27% Similarity=0.373 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
.-.+++|+|++|+|||||.+.+..-.
T Consensus 25 ~G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 25 KGEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 46799999999999999999998764
No 499
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=96.23 E-value=0.034 Score=52.89 Aligned_cols=27 Identities=26% Similarity=0.367 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
+....++|+|++|+|||||++.+..-.
T Consensus 359 ~~G~~~~ivG~sGsGKSTL~~ll~g~~ 385 (585)
T TIGR01192 359 KAGQTVAIVGPTGAGKTTLINLLQRVY 385 (585)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHccCC
Confidence 467899999999999999999996653
No 500
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=96.23 E-value=0.0043 Score=51.90 Aligned_cols=26 Identities=27% Similarity=0.505 Sum_probs=23.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
..-.+++|+|++|+|||||++.+...
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 24 KKGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35679999999999999999999875
Done!