Query 045699
Match_columns 266
No_of_seqs 193 out of 1691
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 07:40:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045699.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045699hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 99.8 5.7E-21 1.9E-25 177.2 11.7 110 152-262 131-256 (549)
2 1vt4_I APAF-1 related killer D 99.7 6.3E-18 2.2E-22 163.0 6.8 113 151-264 130-259 (1221)
3 3sfz_A APAF-1, apoptotic pepti 99.7 1.9E-16 6.5E-21 158.7 9.9 118 147-265 122-252 (1249)
4 1z6t_A APAF-1, apoptotic prote 99.6 2.7E-15 9.1E-20 140.1 11.0 114 148-262 123-249 (591)
5 3qfl_A MLA10; coiled-coil, (CC 99.3 7.6E-12 2.6E-16 91.7 9.4 56 31-86 21-77 (115)
6 1w5s_A Origin recognition comp 99.2 4.4E-11 1.5E-15 106.3 11.0 114 148-261 21-150 (412)
7 2v1u_A Cell division control p 99.1 2.2E-09 7.7E-14 94.2 13.6 113 148-260 18-141 (387)
8 2qby_A CDC6 homolog 1, cell di 99.0 5.6E-10 1.9E-14 97.9 9.1 114 148-261 19-140 (386)
9 2qby_B CDC6 homolog 3, cell di 99.0 1.2E-09 4.2E-14 96.0 10.8 111 149-260 20-144 (384)
10 2qen_A Walker-type ATPase; unk 99.0 7.6E-10 2.6E-14 95.9 8.7 106 148-262 11-141 (350)
11 1fnn_A CDC6P, cell division co 99.0 6.1E-09 2.1E-13 91.6 13.6 113 148-261 16-137 (389)
12 2fna_A Conserved hypothetical 98.8 3.2E-08 1.1E-12 85.7 10.4 69 148-225 12-85 (357)
13 3te6_A Regulatory protein SIR3 98.8 6.9E-08 2.3E-12 82.9 11.8 111 150-261 21-144 (318)
14 2chg_A Replication factor C sm 98.7 1.4E-07 4.8E-12 75.8 11.2 68 148-215 16-83 (226)
15 1jbk_A CLPB protein; beta barr 98.6 1.4E-07 4.7E-12 74.0 8.3 48 148-195 21-68 (195)
16 1njg_A DNA polymerase III subu 98.5 6.8E-07 2.3E-11 72.6 9.8 49 147-195 21-70 (250)
17 2p65_A Hypothetical protein PF 98.4 4.1E-07 1.4E-11 71.1 7.0 49 147-195 20-68 (187)
18 1sxj_B Activator 1 37 kDa subu 98.4 6E-07 2.1E-11 76.7 7.7 49 147-195 19-67 (323)
19 3ec2_A DNA replication protein 98.2 3.1E-06 1E-10 66.3 7.7 90 154-260 19-111 (180)
20 2w58_A DNAI, primosome compone 98.2 4E-06 1.4E-10 66.8 7.8 88 155-260 35-126 (202)
21 3h4m_A Proteasome-activating n 98.2 8.6E-06 2.9E-10 68.5 9.9 49 147-195 15-76 (285)
22 1iqp_A RFCS; clamp loader, ext 98.2 2.1E-06 7.1E-11 73.4 5.8 49 147-195 23-71 (327)
23 1xwi_A SKD1 protein; VPS4B, AA 98.1 3.6E-05 1.2E-09 66.2 12.0 47 148-194 11-69 (322)
24 2qz4_A Paraplegin; AAA+, SPG7, 98.1 2.4E-05 8.1E-10 64.7 10.5 48 148-195 5-64 (262)
25 3b9p_A CG5977-PA, isoform A; A 98.0 4.9E-05 1.7E-09 64.2 11.8 48 148-195 20-79 (297)
26 3pvs_A Replication-associated 98.0 2.9E-05 9.9E-10 69.8 10.6 51 145-195 22-75 (447)
27 2chq_A Replication factor C sm 98.0 1.1E-05 3.8E-10 68.6 7.4 48 147-194 15-62 (319)
28 1hqc_A RUVB; extended AAA-ATPa 98.0 1.6E-05 5.4E-10 68.0 7.4 66 147-217 10-80 (324)
29 3syl_A Protein CBBX; photosynt 97.9 1.5E-05 5.2E-10 67.7 7.0 47 150-196 32-93 (309)
30 3eie_A Vacuolar protein sortin 97.9 6.8E-05 2.3E-09 64.4 11.1 48 148-195 17-76 (322)
31 3d8b_A Fidgetin-like protein 1 97.9 4.7E-05 1.6E-09 66.4 10.1 48 148-195 83-142 (357)
32 1n0w_A DNA repair protein RAD5 97.9 0.00013 4.5E-09 59.4 11.8 94 169-263 23-133 (243)
33 3cf0_A Transitional endoplasmi 97.9 3.6E-05 1.2E-09 65.5 8.6 48 148-195 14-74 (301)
34 2cvh_A DNA repair and recombin 97.9 9.9E-05 3.4E-09 59.2 10.8 88 169-263 19-119 (220)
35 1qvr_A CLPB protein; coiled co 97.9 4.4E-05 1.5E-09 74.1 9.9 47 148-194 169-215 (854)
36 2qp9_X Vacuolar protein sortin 97.9 8.2E-05 2.8E-09 64.8 10.7 48 148-195 50-109 (355)
37 1sxj_A Activator 1 95 kDa subu 97.9 2.5E-05 8.6E-10 71.5 7.4 48 147-194 37-101 (516)
38 1r6b_X CLPA protein; AAA+, N-t 97.8 0.00016 5.5E-09 69.2 12.7 48 148-195 185-232 (758)
39 3vfd_A Spastin; ATPase, microt 97.8 0.00014 4.7E-09 64.1 11.3 48 147-194 113-172 (389)
40 2zan_A Vacuolar protein sortin 97.8 8.6E-05 2.9E-09 66.7 9.9 47 148-194 133-191 (444)
41 1lv7_A FTSH; alpha/beta domain 97.8 8.7E-05 3E-09 61.4 9.2 49 147-195 10-70 (257)
42 3n70_A Transport activator; si 97.8 1.8E-05 6.2E-10 59.8 4.5 45 150-194 2-48 (145)
43 3pfi_A Holliday junction ATP-d 97.8 7.6E-05 2.6E-09 64.2 8.9 49 147-195 27-80 (338)
44 2z4s_A Chromosomal replication 97.8 7.6E-05 2.6E-09 67.0 9.2 39 157-195 116-155 (440)
45 3uk6_A RUVB-like 2; hexameric 97.8 9.8E-05 3.3E-09 64.2 9.4 48 148-195 43-95 (368)
46 1jr3_A DNA polymerase III subu 97.8 9.2E-05 3.2E-09 64.4 9.2 48 148-195 15-63 (373)
47 2vhj_A Ntpase P4, P4; non- hyd 97.7 3.5E-05 1.2E-09 65.9 5.8 70 170-261 123-194 (331)
48 2kjq_A DNAA-related protein; s 97.7 8.1E-05 2.8E-09 56.6 6.5 40 169-210 35-74 (149)
49 3pxg_A Negative regulator of g 97.7 8.9E-05 3E-09 67.0 7.5 48 148-195 179-226 (468)
50 1sxj_C Activator 1 40 kDa subu 97.6 0.00016 5.4E-09 62.5 8.5 48 148-195 24-71 (340)
51 3u61_B DNA polymerase accessor 97.6 0.00036 1.2E-08 59.6 10.7 49 146-194 23-72 (324)
52 4b4t_L 26S protease subunit RP 97.6 0.00033 1.1E-08 62.6 10.5 48 148-195 180-240 (437)
53 3hu3_A Transitional endoplasmi 97.6 0.0002 6.8E-09 65.1 9.2 47 148-194 203-262 (489)
54 4a74_A DNA repair and recombin 97.6 0.00052 1.8E-08 55.3 10.9 92 169-261 24-137 (231)
55 4b4t_J 26S protease regulatory 97.6 0.00027 9.3E-09 62.3 9.6 48 148-195 147-207 (405)
56 3hr8_A Protein RECA; alpha and 97.6 0.00042 1.4E-08 60.3 10.3 87 169-262 60-152 (356)
57 3pxi_A Negative regulator of g 97.6 0.00012 4E-09 70.2 7.1 47 148-194 179-225 (758)
58 4b4t_M 26S protease regulatory 97.6 0.00031 1.1E-08 62.6 9.4 48 148-195 180-240 (434)
59 2w0m_A SSO2452; RECA, SSPF, un 97.6 0.00032 1.1E-08 56.5 8.8 89 169-262 22-136 (235)
60 1l8q_A Chromosomal replication 97.5 0.00028 9.4E-09 60.4 8.7 38 158-195 23-62 (324)
61 3gfo_A Cobalt import ATP-bindi 97.5 0.00044 1.5E-08 58.0 9.6 93 169-264 33-176 (275)
62 3bos_A Putative DNA replicatio 97.5 0.0002 6.9E-09 57.9 7.3 61 148-210 27-90 (242)
63 4b4t_K 26S protease regulatory 97.5 0.00047 1.6E-08 61.4 10.1 48 148-195 171-231 (428)
64 2x8a_A Nuclear valosin-contain 97.5 0.00055 1.9E-08 57.3 9.9 48 148-195 9-69 (274)
65 2pze_A Cystic fibrosis transme 97.5 0.00056 1.9E-08 55.7 9.7 27 169-195 33-59 (229)
66 1vpl_A ABC transporter, ATP-bi 97.5 0.00071 2.4E-08 56.1 10.3 94 168-264 39-179 (256)
67 3rlf_A Maltose/maltodextrin im 97.5 0.00068 2.3E-08 59.4 10.6 94 168-264 27-166 (381)
68 4b4t_H 26S protease regulatory 97.5 0.00073 2.5E-08 60.5 10.9 48 148-195 208-268 (467)
69 2cbz_A Multidrug resistance-as 97.5 0.00046 1.6E-08 56.6 9.0 28 168-195 29-56 (237)
70 3co5_A Putative two-component 97.5 3.6E-05 1.2E-09 58.0 2.2 45 150-194 5-51 (143)
71 1v5w_A DMC1, meiotic recombina 97.5 0.00089 3.1E-08 57.9 11.2 92 168-260 120-230 (343)
72 2ce7_A Cell division protein F 97.5 0.00041 1.4E-08 62.7 9.2 48 148-195 15-74 (476)
73 2zr9_A Protein RECA, recombina 97.5 0.00064 2.2E-08 59.0 10.1 86 169-261 60-151 (349)
74 4fcw_A Chaperone protein CLPB; 97.5 0.00013 4.3E-09 61.9 5.6 46 150-195 18-72 (311)
75 3fvq_A Fe(3+) IONS import ATP- 97.5 0.00065 2.2E-08 59.1 10.0 94 168-264 28-171 (359)
76 1sxj_D Activator 1 41 kDa subu 97.5 9.8E-05 3.4E-09 63.7 4.8 49 147-195 35-83 (353)
77 3tui_C Methionine import ATP-b 97.5 0.00096 3.3E-08 58.1 10.9 94 168-264 52-196 (366)
78 2nq2_C Hypothetical ABC transp 97.5 0.0006 2E-08 56.5 9.3 93 169-264 30-161 (253)
79 1d2n_A N-ethylmaleimide-sensit 97.5 0.00028 9.4E-09 58.8 7.3 28 167-194 61-88 (272)
80 1sxj_E Activator 1 40 kDa subu 97.4 0.00012 4E-09 63.4 4.9 48 147-194 12-60 (354)
81 4g1u_C Hemin import ATP-bindin 97.4 0.0011 3.9E-08 55.2 10.7 26 169-194 36-61 (266)
82 2z43_A DNA repair and recombin 97.4 0.0013 4.4E-08 56.4 11.3 91 169-260 106-214 (324)
83 4b4t_I 26S protease regulatory 97.4 0.00067 2.3E-08 60.2 9.6 48 148-195 181-241 (437)
84 3ice_A Transcription terminati 97.4 0.0013 4.3E-08 57.7 11.1 96 161-260 164-272 (422)
85 3c8u_A Fructokinase; YP_612366 97.4 0.00018 6.3E-09 57.5 5.5 40 156-195 6-47 (208)
86 1pzn_A RAD51, DNA repair and r 97.4 0.00057 2E-08 59.3 8.9 94 168-262 129-244 (349)
87 3lda_A DNA repair protein RAD5 97.4 0.00092 3.2E-08 59.1 10.2 94 169-263 177-287 (400)
88 1z47_A CYSA, putative ABC-tran 97.4 0.00083 2.8E-08 58.4 9.6 93 169-264 40-178 (355)
89 3io5_A Recombination and repai 97.4 0.0013 4.6E-08 56.0 10.4 86 172-262 30-124 (333)
90 2yyz_A Sugar ABC transporter, 97.4 0.0011 3.8E-08 57.7 10.2 94 168-264 27-166 (359)
91 2qgz_A Helicase loader, putati 97.3 0.00032 1.1E-08 59.8 6.6 42 154-195 133-177 (308)
92 3t15_A Ribulose bisphosphate c 97.3 0.00039 1.3E-08 58.8 7.0 27 169-195 35-61 (293)
93 1xp8_A RECA protein, recombina 97.3 0.0014 4.9E-08 57.1 10.6 86 169-261 73-164 (366)
94 2pjz_A Hypothetical protein ST 97.3 0.00088 3E-08 55.8 8.8 92 170-264 30-161 (263)
95 2i1q_A DNA repair and recombin 97.3 0.0011 3.9E-08 56.6 9.6 91 169-260 97-215 (322)
96 1g29_1 MALK, maltose transport 97.3 0.0011 3.9E-08 57.9 9.7 95 169-264 28-172 (372)
97 2it1_A 362AA long hypothetical 97.3 0.0012 4.1E-08 57.5 9.8 94 168-264 27-166 (362)
98 1rz3_A Hypothetical protein rb 97.3 0.00029 9.8E-09 56.1 5.4 42 154-195 3-47 (201)
99 3d31_A Sulfate/molybdate ABC t 97.3 0.0011 3.7E-08 57.5 9.4 94 168-264 24-160 (348)
100 1u94_A RECA protein, recombina 97.3 0.0013 4.6E-08 57.1 9.9 85 169-260 62-152 (356)
101 2xxa_A Signal recognition part 97.3 0.0048 1.6E-07 55.1 13.5 28 169-196 99-126 (433)
102 1sky_E F1-ATPase, F1-ATP synth 97.2 0.0021 7.3E-08 57.6 10.6 89 170-259 151-255 (473)
103 3e70_C DPA, signal recognition 97.2 0.0061 2.1E-07 52.3 13.1 28 168-195 127-154 (328)
104 1oxx_K GLCV, glucose, ABC tran 97.2 0.001 3.5E-08 57.8 8.2 94 168-264 29-173 (353)
105 1ypw_A Transitional endoplasmi 97.2 0.0003 1E-08 67.8 5.3 48 148-195 203-263 (806)
106 1v43_A Sugar-binding transport 97.2 0.0017 5.7E-08 56.8 9.5 94 168-264 35-174 (372)
107 2px0_A Flagellar biosynthesis 97.1 0.0024 8.2E-08 54.1 9.8 27 169-195 104-130 (296)
108 3bk7_A ABC transporter ATP-bin 97.1 0.0017 5.7E-08 60.5 9.5 93 169-264 381-504 (607)
109 1zp6_A Hypothetical protein AT 97.1 0.00029 1E-08 55.2 3.5 25 169-193 8-32 (191)
110 3ozx_A RNAse L inhibitor; ATP 97.1 0.00072 2.4E-08 62.1 6.5 95 169-264 293-418 (538)
111 3tr0_A Guanylate kinase, GMP k 97.1 0.00034 1.2E-08 55.4 3.9 25 170-194 7-31 (205)
112 1in4_A RUVB, holliday junction 97.1 0.00034 1.2E-08 60.3 4.2 48 148-195 24-76 (334)
113 1ye8_A Protein THEP1, hypothet 97.1 0.00033 1.1E-08 54.8 3.5 24 172-195 2-25 (178)
114 1kgd_A CASK, peripheral plasma 97.1 0.00035 1.2E-08 54.6 3.5 25 170-194 5-29 (180)
115 3a00_A Guanylate kinase, GMP k 97.0 0.00031 1.1E-08 55.1 3.1 25 171-195 2-26 (186)
116 2ck3_D ATP synthase subunit be 97.0 0.0041 1.4E-07 55.8 10.7 99 161-260 143-264 (482)
117 1j8m_F SRP54, signal recogniti 97.0 0.0076 2.6E-07 51.0 11.9 26 170-195 98-123 (297)
118 4gp7_A Metallophosphoesterase; 97.0 0.00029 1E-08 54.6 2.9 23 169-191 8-30 (171)
119 1yqt_A RNAse L inhibitor; ATP- 97.0 0.0014 4.9E-08 60.2 7.9 93 169-264 311-434 (538)
120 2ffh_A Protein (FFH); SRP54, s 97.0 0.0079 2.7E-07 53.5 12.4 27 169-195 97-123 (425)
121 4eun_A Thermoresistant glucoki 97.0 0.00047 1.6E-08 54.7 4.0 27 168-194 27-53 (200)
122 1iy2_A ATP-dependent metallopr 97.0 0.0012 4.2E-08 55.1 6.7 23 173-195 76-98 (278)
123 3asz_A Uridine kinase; cytidin 97.0 0.00044 1.5E-08 55.2 3.7 27 169-195 5-31 (211)
124 1znw_A Guanylate kinase, GMP k 97.0 0.00048 1.6E-08 55.0 3.8 27 168-194 18-44 (207)
125 1kag_A SKI, shikimate kinase I 97.0 0.0004 1.4E-08 53.5 3.2 25 171-195 5-29 (173)
126 3ozx_A RNAse L inhibitor; ATP 97.0 0.003 1E-07 58.0 9.4 95 169-264 24-171 (538)
127 3lw7_A Adenylate kinase relate 97.0 0.00041 1.4E-08 53.1 3.2 22 171-193 2-23 (179)
128 1vma_A Cell division protein F 97.0 0.0052 1.8E-07 52.2 10.3 86 169-258 103-195 (306)
129 1htw_A HI0065; nucleotide-bind 97.0 0.00056 1.9E-08 52.4 3.8 27 168-194 31-57 (158)
130 3uie_A Adenylyl-sulfate kinase 97.0 0.00061 2.1E-08 54.0 4.1 29 167-195 22-50 (200)
131 1fx0_B ATP synthase beta chain 96.9 0.0039 1.4E-07 56.1 9.7 92 168-260 163-277 (498)
132 3cf2_A TER ATPase, transitiona 96.9 0.0019 6.4E-08 61.9 8.0 27 169-195 237-263 (806)
133 3j16_B RLI1P; ribosome recycli 96.9 0.0035 1.2E-07 58.3 9.6 91 171-264 379-500 (608)
134 2dr3_A UPF0273 protein PH0284; 96.9 0.0054 1.8E-07 49.7 9.8 47 169-219 22-68 (247)
135 1lvg_A Guanylate kinase, GMP k 96.9 0.00045 1.5E-08 54.9 3.2 25 170-194 4-28 (198)
136 3j16_B RLI1P; ribosome recycli 96.9 0.0052 1.8E-07 57.2 10.7 27 168-194 101-127 (608)
137 3vaa_A Shikimate kinase, SK; s 96.9 0.00065 2.2E-08 53.9 4.0 26 169-194 24-49 (199)
138 2bdt_A BH3686; alpha-beta prot 96.9 0.00054 1.8E-08 53.7 3.5 22 171-192 3-24 (189)
139 1ofh_A ATP-dependent HSL prote 96.9 0.0008 2.7E-08 56.7 4.7 47 149-195 15-75 (310)
140 3m6a_A ATP-dependent protease 96.9 0.0036 1.2E-07 57.6 9.3 46 150-195 82-133 (543)
141 3kb2_A SPBC2 prophage-derived 96.9 0.00062 2.1E-08 52.2 3.6 24 171-194 2-25 (173)
142 2j41_A Guanylate kinase; GMP, 96.9 0.00072 2.5E-08 53.5 4.0 26 169-194 5-30 (207)
143 3tau_A Guanylate kinase, GMP k 96.9 0.00075 2.6E-08 54.0 3.9 26 169-194 7-32 (208)
144 1z6g_A Guanylate kinase; struc 96.9 0.00063 2.1E-08 54.9 3.5 26 169-194 22-47 (218)
145 3dm5_A SRP54, signal recogniti 96.9 0.014 4.7E-07 52.1 12.4 27 169-195 99-125 (443)
146 3aez_A Pantothenate kinase; tr 96.8 0.00072 2.5E-08 57.8 3.9 28 168-195 88-115 (312)
147 1knq_A Gluconate kinase; ALFA/ 96.8 0.00093 3.2E-08 51.6 4.2 25 170-194 8-32 (175)
148 1qhx_A CPT, protein (chloramph 96.8 0.00076 2.6E-08 52.1 3.7 24 171-194 4-27 (178)
149 2onk_A Molybdate/tungstate ABC 96.8 0.0007 2.4E-08 55.6 3.6 93 168-264 23-159 (240)
150 1odf_A YGR205W, hypothetical 3 96.8 0.0016 5.6E-08 54.9 5.9 28 168-195 29-56 (290)
151 2dhr_A FTSH; AAA+ protein, hex 96.8 0.0041 1.4E-07 56.5 8.9 48 148-195 30-89 (499)
152 3tif_A Uncharacterized ABC tra 96.8 0.00074 2.5E-08 55.2 3.6 27 168-194 29-55 (235)
153 2jeo_A Uridine-cytidine kinase 96.8 0.00084 2.9E-08 55.1 4.0 27 168-194 23-49 (245)
154 2bjv_A PSP operon transcriptio 96.8 0.0014 4.7E-08 54.3 5.3 47 149-195 6-54 (265)
155 3t61_A Gluconokinase; PSI-biol 96.8 0.00077 2.6E-08 53.4 3.5 25 170-194 18-42 (202)
156 2pcj_A ABC transporter, lipopr 96.8 0.00071 2.4E-08 54.9 3.1 26 169-194 29-54 (224)
157 3bh0_A DNAB-like replicative h 96.8 0.017 5.7E-07 49.2 11.9 52 168-223 66-117 (315)
158 1s96_A Guanylate kinase, GMP k 96.8 0.00092 3.2E-08 54.1 3.8 27 169-195 15-41 (219)
159 3l0o_A Transcription terminati 96.8 0.0032 1.1E-07 55.1 7.3 99 160-259 164-272 (427)
160 2ga8_A Hypothetical 39.9 kDa p 96.8 0.0018 6.1E-08 56.1 5.7 43 153-195 3-49 (359)
161 2if2_A Dephospho-COA kinase; a 96.8 0.00085 2.9E-08 53.2 3.5 22 171-192 2-23 (204)
162 2bbw_A Adenylate kinase 4, AK4 96.8 0.00088 3E-08 54.9 3.6 26 169-194 26-51 (246)
163 3kl4_A SRP54, signal recogniti 96.7 0.015 5.1E-07 51.8 11.7 27 169-195 96-122 (433)
164 2iw3_A Elongation factor 3A; a 96.7 0.0062 2.1E-07 59.5 9.9 93 169-264 460-581 (986)
165 2i3b_A HCR-ntpase, human cance 96.7 0.00092 3.1E-08 52.8 3.3 25 171-195 2-26 (189)
166 1ly1_A Polynucleotide kinase; 96.7 0.00098 3.4E-08 51.4 3.5 22 171-192 3-24 (181)
167 1cke_A CK, MSSA, protein (cyti 96.7 0.00095 3.2E-08 53.7 3.5 25 170-194 5-29 (227)
168 3trf_A Shikimate kinase, SK; a 96.7 0.0011 3.8E-08 51.5 3.8 26 170-195 5-30 (185)
169 3cmu_A Protein RECA, recombina 96.7 0.0062 2.1E-07 63.5 10.1 85 168-259 1425-1515(2050)
170 1b0u_A Histidine permease; ABC 96.7 0.00098 3.3E-08 55.5 3.6 27 168-194 30-56 (262)
171 3sr0_A Adenylate kinase; phosp 96.7 0.0045 1.5E-07 49.5 7.4 24 172-195 2-25 (206)
172 2gno_A DNA polymerase III, gam 96.7 0.0076 2.6E-07 51.2 9.0 70 155-226 3-75 (305)
173 2qor_A Guanylate kinase; phosp 96.7 0.0011 3.9E-08 52.6 3.6 26 169-194 11-36 (204)
174 1rj9_A FTSY, signal recognitio 96.7 0.0013 4.3E-08 56.0 4.1 27 169-195 101-127 (304)
175 2d2e_A SUFC protein; ABC-ATPas 96.7 0.001 3.5E-08 54.9 3.4 25 169-193 28-52 (250)
176 3b85_A Phosphate starvation-in 96.7 0.00076 2.6E-08 54.1 2.5 25 169-193 21-45 (208)
177 2qt1_A Nicotinamide riboside k 96.7 0.0012 4E-08 52.6 3.6 26 169-194 20-45 (207)
178 2ehv_A Hypothetical protein PH 96.6 0.001 3.6E-08 54.2 3.4 24 169-192 29-52 (251)
179 1g6h_A High-affinity branched- 96.6 0.00098 3.4E-08 55.3 3.2 26 169-194 32-57 (257)
180 1ji0_A ABC transporter; ATP bi 96.6 0.001 3.4E-08 54.6 3.2 93 169-264 31-172 (240)
181 2zu0_C Probable ATP-dependent 96.6 0.0012 4.2E-08 55.0 3.8 26 168-193 44-69 (267)
182 2olj_A Amino acid ABC transpor 96.6 0.0012 4E-08 55.1 3.6 27 168-194 48-74 (263)
183 2jaq_A Deoxyguanosine kinase; 96.6 0.0013 4.5E-08 51.8 3.8 24 172-195 2-25 (205)
184 2yhs_A FTSY, cell division pro 96.6 0.013 4.3E-07 53.1 10.5 27 169-195 292-318 (503)
185 2hf9_A Probable hydrogenase ni 96.6 0.0019 6.6E-08 51.8 4.8 36 159-194 27-62 (226)
186 2r62_A Cell division protease 96.6 0.00078 2.7E-08 55.8 2.5 25 171-195 45-69 (268)
187 3pxi_A Negative regulator of g 96.6 0.002 6.8E-08 61.7 5.6 60 149-210 491-559 (758)
188 1jjv_A Dephospho-COA kinase; P 96.6 0.0011 3.7E-08 52.7 3.2 22 171-192 3-24 (206)
189 1nks_A Adenylate kinase; therm 96.6 0.0013 4.5E-08 51.3 3.6 25 171-195 2-26 (194)
190 1sgw_A Putative ABC transporte 96.6 0.00096 3.3E-08 53.8 2.8 94 169-265 34-167 (214)
191 4e22_A Cytidylate kinase; P-lo 96.6 0.0015 5.1E-08 53.9 4.1 25 169-193 26-50 (252)
192 3iij_A Coilin-interacting nucl 96.6 0.0013 4.6E-08 50.9 3.6 26 170-195 11-36 (180)
193 3vr4_D V-type sodium ATPase su 96.6 0.006 2E-07 54.5 8.1 92 169-260 150-259 (465)
194 1a5t_A Delta prime, HOLB; zinc 96.6 0.012 3.9E-07 50.6 9.8 41 155-195 8-49 (334)
195 2rhm_A Putative kinase; P-loop 96.6 0.0016 5.5E-08 50.8 4.1 25 170-194 5-29 (193)
196 2yvu_A Probable adenylyl-sulfa 96.6 0.0017 6E-08 50.6 4.2 27 169-195 12-38 (186)
197 1zuh_A Shikimate kinase; alpha 96.6 0.0015 5.3E-08 50.0 3.8 27 169-195 6-32 (168)
198 3ney_A 55 kDa erythrocyte memb 96.6 0.0016 5.4E-08 51.8 3.9 26 169-194 18-43 (197)
199 1kht_A Adenylate kinase; phosp 96.6 0.0015 5.1E-08 50.9 3.8 25 171-195 4-28 (192)
200 2ze6_A Isopentenyl transferase 96.6 0.0014 4.9E-08 54.1 3.7 25 171-195 2-26 (253)
201 1via_A Shikimate kinase; struc 96.6 0.0014 4.7E-08 50.7 3.4 25 171-195 5-29 (175)
202 1uf9_A TT1252 protein; P-loop, 96.6 0.0016 5.4E-08 51.3 3.9 26 168-193 6-31 (203)
203 1ls1_A Signal recognition part 96.6 0.021 7.4E-07 48.1 11.1 27 169-195 97-123 (295)
204 2b8t_A Thymidine kinase; deoxy 96.6 0.00092 3.2E-08 54.2 2.4 86 169-259 11-99 (223)
205 2ff7_A Alpha-hemolysin translo 96.6 0.0012 4.2E-08 54.4 3.2 26 169-194 34-59 (247)
206 3b9q_A Chloroplast SRP recepto 96.6 0.0015 5.1E-08 55.5 3.8 27 169-195 99-125 (302)
207 3lnc_A Guanylate kinase, GMP k 96.6 0.00092 3.1E-08 54.2 2.4 25 169-193 26-51 (231)
208 1y63_A LMAJ004144AAA protein; 96.5 0.0021 7.1E-08 50.2 4.4 25 169-193 9-33 (184)
209 1sq5_A Pantothenate kinase; P- 96.5 0.0015 5.3E-08 55.5 3.9 28 168-195 78-105 (308)
210 1mv5_A LMRA, multidrug resista 96.5 0.0015 5E-08 53.7 3.6 27 168-194 26-52 (243)
211 2wsm_A Hydrogenase expression/ 96.5 0.0016 5.6E-08 52.1 3.8 39 156-194 16-54 (221)
212 2qi9_C Vitamin B12 import ATP- 96.5 0.0013 4.5E-08 54.3 3.2 26 169-194 25-50 (249)
213 2ghi_A Transport protein; mult 96.5 0.0015 5.2E-08 54.2 3.6 27 168-194 44-70 (260)
214 2ihy_A ABC transporter, ATP-bi 96.5 0.0013 4.5E-08 55.2 3.2 26 169-194 46-71 (279)
215 2yz2_A Putative ABC transporte 96.5 0.0016 5.3E-08 54.3 3.6 94 168-264 31-171 (266)
216 2ixe_A Antigen peptide transpo 96.5 0.0016 5.3E-08 54.5 3.6 27 168-194 43-69 (271)
217 1g8p_A Magnesium-chelatase 38 96.5 0.0012 4E-08 56.8 2.9 48 148-195 23-70 (350)
218 3tqc_A Pantothenate kinase; bi 96.5 0.0019 6.4E-08 55.3 4.1 27 169-195 91-117 (321)
219 3gqb_B V-type ATP synthase bet 96.5 0.0073 2.5E-07 53.9 7.9 93 168-260 145-262 (464)
220 2c95_A Adenylate kinase 1; tra 96.5 0.0022 7.6E-08 50.2 4.1 27 169-195 8-34 (196)
221 1tev_A UMP-CMP kinase; ploop, 96.5 0.002 7E-08 50.2 3.8 26 170-195 3-28 (196)
222 3hws_A ATP-dependent CLP prote 96.5 0.0037 1.3E-07 54.2 5.8 45 151-195 17-76 (363)
223 1xjc_A MOBB protein homolog; s 96.5 0.0022 7.5E-08 49.7 3.8 27 169-195 3-29 (169)
224 3cm0_A Adenylate kinase; ATP-b 96.4 0.0021 7.1E-08 50.0 3.7 25 170-194 4-28 (186)
225 2ck3_A ATP synthase subunit al 96.4 0.026 9E-07 51.0 11.3 98 162-259 153-272 (510)
226 1ukz_A Uridylate kinase; trans 96.4 0.0023 7.8E-08 50.6 4.0 27 168-194 13-39 (203)
227 2qe7_A ATP synthase subunit al 96.4 0.024 8.1E-07 51.1 11.0 94 162-259 153-264 (502)
228 1ex7_A Guanylate kinase; subst 96.4 0.0018 6.2E-08 51.0 3.3 24 171-194 2-25 (186)
229 2j37_W Signal recognition part 96.4 0.053 1.8E-06 49.2 13.4 27 169-195 100-126 (504)
230 2iyv_A Shikimate kinase, SK; t 96.4 0.0019 6.6E-08 50.2 3.3 25 171-195 3-27 (184)
231 1ixz_A ATP-dependent metallopr 96.4 0.0018 6.1E-08 53.2 3.3 23 173-195 52-74 (254)
232 2og2_A Putative signal recogni 96.4 0.0022 7.6E-08 55.7 4.0 27 169-195 156-182 (359)
233 2f1r_A Molybdopterin-guanine d 96.4 0.0012 4E-08 51.3 2.0 27 170-196 2-28 (171)
234 2r44_A Uncharacterized protein 96.4 0.002 6.9E-08 55.1 3.6 45 149-195 27-71 (331)
235 3sop_A Neuronal-specific septi 96.4 0.0019 6.5E-08 53.9 3.4 23 172-194 4-26 (270)
236 2plr_A DTMP kinase, probable t 96.4 0.0027 9.1E-08 50.3 4.0 26 170-195 4-29 (213)
237 1e6c_A Shikimate kinase; phosp 96.4 0.0022 7.4E-08 49.2 3.3 25 171-195 3-27 (173)
238 2bwj_A Adenylate kinase 5; pho 96.4 0.0024 8.1E-08 50.1 3.6 26 170-195 12-37 (199)
239 2r9v_A ATP synthase subunit al 96.3 0.023 7.8E-07 51.3 10.3 88 168-259 173-277 (515)
240 2eyu_A Twitching motility prot 96.3 0.0026 8.7E-08 52.9 3.9 28 168-195 23-50 (261)
241 1ojl_A Transcriptional regulat 96.3 0.003 1E-07 53.6 4.4 46 150-195 3-50 (304)
242 3cf2_A TER ATPase, transitiona 96.3 0.013 4.3E-07 56.2 9.0 94 148-261 476-582 (806)
243 1qf9_A UMP/CMP kinase, protein 96.3 0.0032 1.1E-07 49.0 4.2 26 170-195 6-31 (194)
244 1um8_A ATP-dependent CLP prote 96.3 0.005 1.7E-07 53.6 5.8 25 170-194 72-96 (376)
245 2bbs_A Cystic fibrosis transme 96.3 0.0024 8.2E-08 53.9 3.6 28 168-195 62-89 (290)
246 3a4m_A L-seryl-tRNA(SEC) kinas 96.3 0.0028 9.7E-08 52.4 3.9 25 170-194 4-28 (260)
247 2c9o_A RUVB-like 1; hexameric 96.3 0.0044 1.5E-07 55.6 5.5 48 148-195 36-88 (456)
248 2pbr_A DTMP kinase, thymidylat 96.3 0.003 1E-07 49.3 3.8 23 172-194 2-24 (195)
249 1gtv_A TMK, thymidylate kinase 96.3 0.0014 4.8E-08 52.2 1.9 25 171-195 1-25 (214)
250 3oaa_A ATP synthase subunit al 96.3 0.027 9.3E-07 50.8 10.3 89 168-259 160-264 (513)
251 2pt5_A Shikimate kinase, SK; a 96.3 0.0031 1.1E-07 48.1 3.8 24 172-195 2-25 (168)
252 2v9p_A Replication protein E1; 96.3 0.0028 9.6E-08 53.8 3.8 28 167-194 123-150 (305)
253 2pez_A Bifunctional 3'-phospho 96.3 0.003 1E-07 48.9 3.8 26 169-194 4-29 (179)
254 2cdn_A Adenylate kinase; phosp 96.3 0.0037 1.3E-07 49.3 4.3 26 169-194 19-44 (201)
255 2vli_A Antibiotic resistance p 96.2 0.002 6.7E-08 49.9 2.6 26 170-195 5-30 (183)
256 2z0h_A DTMP kinase, thymidylat 96.2 0.0093 3.2E-07 46.5 6.5 24 172-195 2-25 (197)
257 1aky_A Adenylate kinase; ATP:A 96.2 0.0035 1.2E-07 50.3 4.1 26 170-195 4-29 (220)
258 2wwf_A Thymidilate kinase, put 96.2 0.0035 1.2E-07 49.7 4.0 32 170-202 10-41 (212)
259 2c61_A A-type ATP synthase non 96.2 0.008 2.7E-07 53.8 6.6 98 162-259 143-259 (469)
260 1cr0_A DNA primase/helicase; R 96.2 0.012 4.1E-07 49.4 7.5 41 168-209 33-73 (296)
261 1qvr_A CLPB protein; coiled co 96.2 0.0028 9.6E-08 61.5 4.0 46 150-195 559-613 (854)
262 1nn5_A Similar to deoxythymidy 96.2 0.0037 1.3E-07 49.7 4.1 27 169-195 8-34 (215)
263 1r6b_X CLPA protein; AAA+, N-t 96.2 0.0073 2.5E-07 57.7 6.7 45 150-194 459-512 (758)
264 1m7g_A Adenylylsulfate kinase; 96.2 0.0038 1.3E-07 49.8 4.1 28 168-195 23-50 (211)
265 3nwj_A ATSK2; P loop, shikimat 96.2 0.0029 1E-07 52.2 3.4 26 170-195 48-73 (250)
266 1zak_A Adenylate kinase; ATP:A 96.2 0.0035 1.2E-07 50.3 3.8 27 169-195 4-30 (222)
267 3nh6_A ATP-binding cassette SU 96.2 0.0023 7.8E-08 54.5 2.8 26 168-193 78-103 (306)
268 1uj2_A Uridine-cytidine kinase 96.2 0.0034 1.2E-07 51.6 3.8 28 168-195 20-47 (252)
269 2grj_A Dephospho-COA kinase; T 96.2 0.0035 1.2E-07 49.6 3.7 27 168-194 10-36 (192)
270 1zd8_A GTP:AMP phosphotransfer 96.2 0.0035 1.2E-07 50.6 3.7 25 170-194 7-31 (227)
271 1oix_A RAS-related protein RAB 96.1 0.0035 1.2E-07 49.1 3.4 25 170-194 29-53 (191)
272 3umf_A Adenylate kinase; rossm 96.1 0.0045 1.5E-07 49.9 4.1 28 168-195 27-54 (217)
273 1vht_A Dephospho-COA kinase; s 96.1 0.0042 1.4E-07 49.7 3.9 23 170-192 4-26 (218)
274 3fwy_A Light-independent proto 96.1 0.0033 1.1E-07 53.7 3.5 28 168-195 46-73 (314)
275 3fb4_A Adenylate kinase; psych 96.1 0.0039 1.3E-07 49.7 3.7 23 172-194 2-24 (216)
276 2v54_A DTMP kinase, thymidylat 96.1 0.0041 1.4E-07 49.0 3.8 25 170-194 4-28 (204)
277 3nbx_X ATPase RAVA; AAA+ ATPas 96.1 0.003 1E-07 57.4 3.3 44 150-195 23-66 (500)
278 3kta_A Chromosome segregation 96.1 0.0036 1.2E-07 48.5 3.3 23 171-193 27-49 (182)
279 3vr4_A V-type sodium ATPase ca 96.1 0.026 8.9E-07 51.7 9.2 94 162-259 223-339 (600)
280 1np6_A Molybdopterin-guanine d 96.1 0.0046 1.6E-07 48.1 3.8 27 169-195 5-31 (174)
281 2vp4_A Deoxynucleoside kinase; 96.1 0.0024 8.4E-08 51.7 2.3 25 169-193 19-43 (230)
282 1gvn_B Zeta; postsegregational 96.1 0.0039 1.3E-07 52.5 3.6 26 169-194 32-57 (287)
283 2r6a_A DNAB helicase, replicat 96.0 0.054 1.9E-06 48.5 11.3 90 168-260 201-324 (454)
284 3mfy_A V-type ATP synthase alp 96.0 0.048 1.7E-06 49.8 10.8 96 162-261 218-336 (588)
285 3dl0_A Adenylate kinase; phosp 96.0 0.0045 1.5E-07 49.4 3.7 23 172-194 2-24 (216)
286 2f9l_A RAB11B, member RAS onco 96.0 0.0039 1.3E-07 49.0 3.3 24 170-193 5-28 (199)
287 4f4c_A Multidrug resistance pr 96.0 0.037 1.3E-06 56.2 11.0 27 168-194 442-468 (1321)
288 2f6r_A COA synthase, bifunctio 96.0 0.0044 1.5E-07 52.0 3.6 24 169-192 74-97 (281)
289 4a1f_A DNAB helicase, replicat 96.0 0.073 2.5E-06 45.8 11.3 51 169-223 45-95 (338)
290 3ake_A Cytidylate kinase; CMP 96.0 0.005 1.7E-07 48.6 3.8 24 172-195 4-27 (208)
291 3r20_A Cytidylate kinase; stru 96.0 0.0049 1.7E-07 50.3 3.7 26 170-195 9-34 (233)
292 4eaq_A DTMP kinase, thymidylat 96.0 0.012 4E-07 47.8 5.9 28 169-196 25-52 (229)
293 2p5t_B PEZT; postsegregational 95.9 0.0033 1.1E-07 51.8 2.6 26 169-194 31-56 (253)
294 3gd7_A Fusion complex of cysti 95.9 0.0048 1.6E-07 54.3 3.7 26 168-193 45-70 (390)
295 3gmt_A Adenylate kinase; ssgci 95.9 0.032 1.1E-06 45.3 8.4 27 169-195 7-33 (230)
296 3k1j_A LON protease, ATP-depen 95.9 0.0059 2E-07 56.9 4.5 46 148-195 40-85 (604)
297 1lw7_A Transcriptional regulat 95.9 0.0043 1.5E-07 54.0 3.3 26 170-195 170-195 (365)
298 2q6t_A DNAB replication FORK h 95.9 0.073 2.5E-06 47.5 11.3 52 169-223 199-250 (444)
299 2obl_A ESCN; ATPase, hydrolase 95.9 0.0048 1.7E-07 53.4 3.5 28 168-195 69-96 (347)
300 3tlx_A Adenylate kinase 2; str 95.9 0.0064 2.2E-07 49.7 4.0 27 168-194 27-53 (243)
301 3cmw_A Protein RECA, recombina 95.8 0.03 1E-06 57.8 9.4 86 169-261 731-822 (1706)
302 3d3q_A TRNA delta(2)-isopenten 95.8 0.006 2.1E-07 52.5 3.7 25 171-195 8-32 (340)
303 2npi_A Protein CLP1; CLP1-PCF1 95.8 0.0046 1.6E-07 55.6 3.1 27 168-194 136-162 (460)
304 1q3t_A Cytidylate kinase; nucl 95.8 0.0077 2.6E-07 48.9 4.2 26 169-194 15-40 (236)
305 3jvv_A Twitching mobility prot 95.8 0.0063 2.2E-07 52.9 3.8 27 169-195 122-148 (356)
306 1nij_A Hypothetical protein YJ 95.8 0.0043 1.5E-07 53.0 2.7 26 169-194 3-28 (318)
307 1nlf_A Regulatory protein REPA 95.7 0.0057 2E-07 51.0 3.3 27 169-195 29-55 (279)
308 1fx0_A ATP synthase alpha chai 95.7 0.0088 3E-07 54.0 4.7 87 169-259 162-265 (507)
309 1zu4_A FTSY; GTPase, signal re 95.7 0.0081 2.8E-07 51.4 4.3 27 169-195 104-130 (320)
310 1e4v_A Adenylate kinase; trans 95.7 0.007 2.4E-07 48.3 3.7 23 172-194 2-24 (214)
311 2xb4_A Adenylate kinase; ATP-b 95.7 0.0072 2.5E-07 48.7 3.7 23 172-194 2-24 (223)
312 1svm_A Large T antigen; AAA+ f 95.7 0.0072 2.5E-07 52.9 3.9 28 167-194 166-193 (377)
313 2ewv_A Twitching motility prot 95.7 0.0095 3.2E-07 52.1 4.6 29 167-195 133-161 (372)
314 3p32_A Probable GTPase RV1496/ 95.7 0.015 5E-07 50.4 5.8 36 159-194 66-103 (355)
315 3be4_A Adenylate kinase; malar 95.7 0.0076 2.6E-07 48.2 3.7 26 170-195 5-30 (217)
316 3cmu_A Protein RECA, recombina 95.7 0.042 1.4E-06 57.5 9.8 85 169-260 382-472 (2050)
317 1ak2_A Adenylate kinase isoenz 95.7 0.0093 3.2E-07 48.3 4.2 27 169-195 15-41 (233)
318 1g41_A Heat shock protein HSLU 95.6 0.0079 2.7E-07 53.7 4.0 47 149-195 15-75 (444)
319 2wji_A Ferrous iron transport 95.6 0.0064 2.2E-07 46.2 3.0 23 171-193 4-26 (165)
320 3qfl_A MLA10; coiled-coil, (CC 95.6 0.039 1.3E-06 39.6 7.0 81 5-85 2-83 (115)
321 3hjn_A DTMP kinase, thymidylat 95.6 0.037 1.3E-06 43.7 7.5 49 172-222 2-50 (197)
322 4f4c_A Multidrug resistance pr 95.6 0.039 1.3E-06 56.0 9.3 26 168-193 1103-1128(1321)
323 1yqt_A RNAse L inhibitor; ATP- 95.6 0.0078 2.7E-07 55.3 3.8 94 169-264 46-191 (538)
324 2gza_A Type IV secretion syste 95.6 0.0058 2E-07 53.2 2.8 26 169-194 174-199 (361)
325 1p9r_A General secretion pathw 95.6 0.011 3.6E-07 52.6 4.5 29 167-195 164-192 (418)
326 3upu_A ATP-dependent DNA helic 95.5 0.026 8.8E-07 50.6 7.1 42 153-195 29-70 (459)
327 1tq4_A IIGP1, interferon-induc 95.5 0.0078 2.7E-07 53.3 3.5 25 169-193 68-92 (413)
328 3crm_A TRNA delta(2)-isopenten 95.5 0.0087 3E-07 51.2 3.7 24 171-194 6-29 (323)
329 3cmw_A Protein RECA, recombina 95.5 0.044 1.5E-06 56.5 9.3 86 169-261 1430-1521(1706)
330 1yrb_A ATP(GTP)binding protein 95.5 0.011 3.9E-07 48.3 4.3 27 169-195 13-39 (262)
331 2dyk_A GTP-binding protein; GT 95.5 0.0098 3.3E-07 44.5 3.6 23 171-193 2-24 (161)
332 2zej_A Dardarin, leucine-rich 95.5 0.0072 2.5E-07 46.8 2.9 21 172-192 4-24 (184)
333 1tf7_A KAIC; homohexamer, hexa 95.5 0.1 3.5E-06 47.6 11.0 87 169-262 280-383 (525)
334 1a7j_A Phosphoribulokinase; tr 95.5 0.0044 1.5E-07 52.3 1.7 26 169-194 4-29 (290)
335 2wjg_A FEOB, ferrous iron tran 95.5 0.0083 2.8E-07 46.3 3.2 23 171-193 8-30 (188)
336 1ltq_A Polynucleotide kinase; 95.5 0.0086 3E-07 50.3 3.5 23 171-193 3-25 (301)
337 3euj_A Chromosome partition pr 95.5 0.009 3.1E-07 53.9 3.8 25 171-195 30-54 (483)
338 1tue_A Replication protein E1; 95.5 0.018 6.1E-07 45.9 5.0 38 158-195 45-83 (212)
339 2ce2_X GTPase HRAS; signaling 95.5 0.0089 3.1E-07 44.7 3.2 22 172-193 5-26 (166)
340 2zts_A Putative uncharacterize 95.5 0.059 2E-06 43.4 8.5 50 169-221 29-78 (251)
341 2yv5_A YJEQ protein; hydrolase 95.4 0.015 5.1E-07 49.2 4.9 32 159-194 157-188 (302)
342 2qm8_A GTPase/ATPase; G protei 95.4 0.011 3.6E-07 51.0 3.9 28 167-194 52-79 (337)
343 2qnr_A Septin-2, protein NEDD5 95.4 0.007 2.4E-07 51.3 2.8 22 172-193 20-41 (301)
344 2dpy_A FLII, flagellum-specifi 95.4 0.0087 3E-07 53.5 3.5 31 165-195 152-182 (438)
345 3g5u_A MCG1178, multidrug resi 95.4 0.068 2.3E-06 54.1 10.3 92 168-263 414-558 (1284)
346 3bgw_A DNAB-like replicative h 95.4 0.11 3.8E-06 46.4 10.6 51 168-222 195-245 (444)
347 3zvl_A Bifunctional polynucleo 95.4 0.0093 3.2E-07 52.9 3.5 27 168-194 256-282 (416)
348 3lv8_A DTMP kinase, thymidylat 95.4 0.036 1.2E-06 45.2 6.7 37 170-207 27-63 (236)
349 1z2a_A RAS-related protein RAB 95.4 0.01 3.5E-07 44.6 3.3 24 170-193 5-28 (168)
350 2pt7_A CAG-ALFA; ATPase, prote 95.3 0.0062 2.1E-07 52.3 2.2 27 169-195 170-196 (330)
351 1q57_A DNA primase/helicase; d 95.3 0.14 4.6E-06 46.4 11.1 51 169-222 241-291 (503)
352 3exa_A TRNA delta(2)-isopenten 95.3 0.012 4.1E-07 50.1 3.8 25 170-194 3-27 (322)
353 1f2t_A RAD50 ABC-ATPase; DNA d 95.3 0.012 4E-07 44.4 3.3 24 170-193 23-46 (149)
354 1pui_A ENGB, probable GTP-bind 95.3 0.0073 2.5E-07 47.7 2.2 27 167-193 23-49 (210)
355 2qag_B Septin-6, protein NEDD5 95.2 0.0076 2.6E-07 53.5 2.5 26 168-193 38-65 (427)
356 3foz_A TRNA delta(2)-isopenten 95.2 0.016 5.3E-07 49.3 4.2 26 169-194 9-34 (316)
357 1fzq_A ADP-ribosylation factor 95.2 0.018 6E-07 44.4 4.3 26 168-193 14-39 (181)
358 3con_A GTPase NRAS; structural 95.2 0.012 4E-07 45.5 3.3 24 171-194 22-45 (190)
359 2ged_A SR-beta, signal recogni 95.2 0.015 5.2E-07 45.0 3.9 25 169-193 47-71 (193)
360 1u8z_A RAS-related protein RAL 95.2 0.013 4.3E-07 44.0 3.3 24 171-194 5-28 (168)
361 3end_A Light-independent proto 95.2 0.015 5.1E-07 49.1 4.0 29 167-195 38-66 (307)
362 4tmk_A Protein (thymidylate ki 95.2 0.048 1.6E-06 43.7 6.8 27 170-196 3-29 (213)
363 3ld9_A DTMP kinase, thymidylat 95.2 0.036 1.2E-06 44.7 6.1 29 168-196 19-47 (223)
364 2ocp_A DGK, deoxyguanosine kin 95.2 0.015 5.1E-07 47.3 3.9 25 170-194 2-26 (241)
365 4edh_A DTMP kinase, thymidylat 95.2 0.055 1.9E-06 43.3 7.1 32 170-202 6-37 (213)
366 2gj8_A MNME, tRNA modification 95.2 0.011 3.8E-07 45.3 2.9 24 170-193 4-27 (172)
367 3a8t_A Adenylate isopentenyltr 95.2 0.012 4E-07 50.6 3.3 26 169-194 39-64 (339)
368 3t1o_A Gliding protein MGLA; G 95.1 0.013 4.4E-07 45.4 3.3 24 170-193 14-37 (198)
369 3bk7_A ABC transporter ATP-bin 95.1 0.012 4.1E-07 54.8 3.6 94 169-264 116-261 (607)
370 1c1y_A RAS-related protein RAP 95.1 0.014 4.6E-07 43.9 3.3 22 172-193 5-26 (167)
371 3gqb_A V-type ATP synthase alp 95.1 0.026 8.9E-07 51.5 5.5 94 162-259 212-328 (578)
372 1r8s_A ADP-ribosylation factor 95.1 0.015 5.2E-07 43.6 3.4 22 172-193 2-23 (164)
373 3cr8_A Sulfate adenylyltranfer 95.1 0.011 3.8E-07 54.3 3.1 27 169-195 368-394 (552)
374 1u0l_A Probable GTPase ENGC; p 95.1 0.022 7.4E-07 48.2 4.7 33 159-194 161-193 (301)
375 1moz_A ARL1, ADP-ribosylation 95.0 0.019 6.5E-07 43.9 4.0 33 161-193 8-41 (183)
376 1z08_A RAS-related protein RAB 95.0 0.015 5E-07 43.9 3.3 23 171-193 7-29 (170)
377 2www_A Methylmalonic aciduria 95.0 0.016 5.5E-07 50.1 3.9 26 169-194 73-98 (349)
378 2nzj_A GTP-binding protein REM 95.0 0.012 4E-07 44.7 2.7 24 170-193 4-27 (175)
379 1ek0_A Protein (GTP-binding pr 95.0 0.015 5.1E-07 43.7 3.3 23 172-194 5-27 (170)
380 2erx_A GTP-binding protein DI- 95.0 0.013 4.5E-07 44.1 2.9 23 171-193 4-26 (172)
381 1kao_A RAP2A; GTP-binding prot 95.0 0.015 5.1E-07 43.5 3.3 23 171-193 4-26 (167)
382 2lkc_A Translation initiation 95.0 0.017 5.8E-07 44.0 3.6 26 168-193 6-31 (178)
383 1z0j_A RAB-22, RAS-related pro 95.0 0.015 5.2E-07 43.7 3.3 24 171-194 7-30 (170)
384 3b5x_A Lipid A export ATP-bind 95.0 0.014 4.7E-07 54.1 3.5 27 168-194 367-393 (582)
385 3b60_A Lipid A export ATP-bind 95.0 0.014 4.7E-07 54.1 3.5 27 168-194 367-393 (582)
386 1ky3_A GTP-binding protein YPT 95.0 0.015 5.1E-07 44.3 3.3 25 169-193 7-31 (182)
387 4gzl_A RAS-related C3 botulinu 95.0 0.017 5.7E-07 45.5 3.6 28 166-193 26-53 (204)
388 1nrj_B SR-beta, signal recogni 95.0 0.019 6.7E-07 45.4 4.0 27 168-194 10-36 (218)
389 1svi_A GTP-binding protein YSX 95.0 0.018 6.2E-07 44.6 3.7 26 168-193 21-46 (195)
390 2rcn_A Probable GTPase ENGC; Y 95.0 0.015 5E-07 50.5 3.4 26 170-195 215-240 (358)
391 1m7b_A RND3/RHOE small GTP-bin 94.9 0.016 5.4E-07 44.7 3.2 24 170-193 7-30 (184)
392 2fn4_A P23, RAS-related protei 94.9 0.016 5.4E-07 44.1 3.2 25 169-193 8-32 (181)
393 1f6b_A SAR1; gtpases, N-termin 94.9 0.025 8.4E-07 44.4 4.4 32 161-192 15-47 (198)
394 1zj6_A ADP-ribosylation factor 94.9 0.027 9.3E-07 43.4 4.6 33 160-193 7-39 (187)
395 1wms_A RAB-9, RAB9, RAS-relate 94.9 0.017 5.7E-07 44.0 3.3 24 170-193 7-30 (177)
396 3ihw_A Centg3; RAS, centaurin, 94.9 0.017 5.7E-07 44.8 3.3 24 170-193 20-43 (184)
397 3pqc_A Probable GTP-binding pr 94.9 0.018 6.2E-07 44.4 3.5 26 169-194 22-47 (195)
398 3q72_A GTP-binding protein RAD 94.9 0.015 5.1E-07 43.7 2.9 22 171-192 3-24 (166)
399 1r2q_A RAS-related protein RAB 94.9 0.017 5.9E-07 43.3 3.3 23 171-193 7-29 (170)
400 1g16_A RAS-related protein SEC 94.9 0.017 5.8E-07 43.5 3.2 23 171-193 4-26 (170)
401 3thx_A DNA mismatch repair pro 94.9 0.036 1.2E-06 54.1 6.1 22 169-190 661-682 (934)
402 2hxs_A RAB-26, RAS-related pro 94.8 0.017 5.7E-07 44.0 3.1 24 170-193 6-29 (178)
403 3q85_A GTP-binding protein REM 94.8 0.016 5.4E-07 43.7 3.0 22 171-192 3-24 (169)
404 1z0f_A RAB14, member RAS oncog 94.8 0.018 6.3E-07 43.7 3.3 25 170-194 15-39 (179)
405 2h92_A Cytidylate kinase; ross 94.8 0.018 6E-07 45.9 3.3 24 171-194 4-27 (219)
406 1m2o_B GTP-binding protein SAR 94.8 0.018 6.1E-07 44.8 3.2 25 169-193 22-46 (190)
407 1upt_A ARL1, ADP-ribosylation 94.8 0.019 6.5E-07 43.3 3.3 24 170-193 7-30 (171)
408 2p67_A LAO/AO transport system 94.8 0.021 7.1E-07 49.2 3.8 28 167-194 53-80 (341)
409 4dsu_A GTPase KRAS, isoform 2B 94.7 0.019 6.5E-07 44.1 3.3 24 171-194 5-28 (189)
410 1cp2_A CP2, nitrogenase iron p 94.7 0.023 7.8E-07 46.8 3.9 25 171-195 2-26 (269)
411 3kkq_A RAS-related protein M-R 94.7 0.02 6.7E-07 43.9 3.3 24 170-193 18-41 (183)
412 3bc1_A RAS-related protein RAB 94.7 0.02 6.8E-07 44.1 3.3 24 170-193 11-34 (195)
413 2oil_A CATX-8, RAS-related pro 94.7 0.02 6.8E-07 44.4 3.3 24 170-193 25-48 (193)
414 2bme_A RAB4A, RAS-related prot 94.7 0.02 6.8E-07 43.9 3.2 25 170-194 10-34 (186)
415 3eph_A TRNA isopentenyltransfe 94.7 0.021 7.1E-07 50.3 3.6 24 171-194 3-26 (409)
416 3c5c_A RAS-like protein 12; GD 94.7 0.02 7E-07 44.3 3.3 26 169-194 20-45 (187)
417 2a9k_A RAS-related protein RAL 94.7 0.021 7.2E-07 43.7 3.3 25 170-194 18-42 (187)
418 3dz8_A RAS-related protein RAB 94.6 0.022 7.4E-07 44.2 3.4 25 170-194 23-47 (191)
419 3tw8_B RAS-related protein RAB 94.6 0.019 6.4E-07 43.7 2.9 25 169-193 8-32 (181)
420 2cxx_A Probable GTP-binding pr 94.6 0.017 5.8E-07 44.5 2.7 22 172-193 3-24 (190)
421 2y8e_A RAB-protein 6, GH09086P 94.6 0.021 7.3E-07 43.3 3.2 23 171-193 15-37 (179)
422 1mh1_A RAC1; GTP-binding, GTPa 94.6 0.022 7.4E-07 43.6 3.3 23 171-193 6-28 (186)
423 2qag_C Septin-7; cell cycle, c 94.6 0.014 4.9E-07 51.7 2.4 21 173-193 34-54 (418)
424 2atv_A RERG, RAS-like estrogen 94.6 0.026 9E-07 43.9 3.8 26 168-193 26-51 (196)
425 2yl4_A ATP-binding cassette SU 94.6 0.014 4.6E-07 54.3 2.4 27 168-194 368-394 (595)
426 2efe_B Small GTP-binding prote 94.6 0.022 7.6E-07 43.4 3.3 23 171-193 13-35 (181)
427 3bwd_D RAC-like GTP-binding pr 94.6 0.023 7.7E-07 43.4 3.3 25 169-193 7-31 (182)
428 2v3c_C SRP54, signal recogniti 94.5 0.015 5.2E-07 51.8 2.5 26 170-195 99-124 (432)
429 2bov_A RAla, RAS-related prote 94.5 0.023 7.8E-07 44.4 3.3 25 169-193 13-37 (206)
430 3t5g_A GTP-binding protein RHE 94.5 0.023 7.8E-07 43.4 3.2 24 170-193 6-29 (181)
431 2g6b_A RAS-related protein RAB 94.5 0.023 8E-07 43.2 3.3 25 170-194 10-34 (180)
432 4a82_A Cystic fibrosis transme 94.5 0.013 4.4E-07 54.3 2.1 27 168-194 365-391 (578)
433 1vg8_A RAS-related protein RAB 94.5 0.023 7.9E-07 44.5 3.3 26 169-194 7-32 (207)
434 2iwr_A Centaurin gamma 1; ANK 94.5 0.017 5.9E-07 44.0 2.4 23 171-193 8-30 (178)
435 3llu_A RAS-related GTP-binding 94.5 0.019 6.6E-07 44.8 2.8 25 169-193 19-43 (196)
436 3clv_A RAB5 protein, putative; 94.5 0.024 8E-07 44.0 3.3 25 169-193 6-30 (208)
437 2oap_1 GSPE-2, type II secreti 94.5 0.018 6E-07 52.5 2.8 25 170-194 260-284 (511)
438 3qf4_B Uncharacterized ABC tra 94.5 0.016 5.4E-07 53.9 2.6 27 168-194 379-405 (598)
439 1ega_A Protein (GTP-binding pr 94.5 0.021 7.2E-07 48.2 3.1 25 169-193 7-31 (301)
440 2b6h_A ADP-ribosylation factor 94.5 0.022 7.5E-07 44.4 3.0 27 167-193 26-52 (192)
441 2fg5_A RAB-22B, RAS-related pr 94.5 0.024 8.1E-07 44.0 3.2 25 170-194 23-47 (192)
442 3oes_A GTPase rhebl1; small GT 94.4 0.024 8.2E-07 44.4 3.2 26 169-194 23-48 (201)
443 2afh_E Nitrogenase iron protei 94.4 0.03 1E-06 46.8 4.0 26 170-195 2-27 (289)
444 3cbq_A GTP-binding protein REM 94.4 0.018 6.1E-07 45.1 2.4 23 169-191 22-44 (195)
445 1tf7_A KAIC; homohexamer, hexa 94.4 0.02 7E-07 52.2 3.2 23 168-190 37-59 (525)
446 3k53_A Ferrous iron transport 94.4 0.024 8.2E-07 47.0 3.3 24 170-193 3-26 (271)
447 3v9p_A DTMP kinase, thymidylat 94.4 0.053 1.8E-06 43.9 5.2 27 169-195 24-50 (227)
448 2cjw_A GTP-binding protein GEM 94.4 0.027 9.2E-07 43.9 3.4 23 170-192 6-28 (192)
449 3f9v_A Minichromosome maintena 94.4 0.014 4.7E-07 54.3 2.0 23 172-194 329-351 (595)
450 1p5z_B DCK, deoxycytidine kina 94.4 0.013 4.5E-07 48.3 1.7 26 169-194 23-48 (263)
451 2ew1_A RAS-related protein RAB 94.4 0.025 8.5E-07 44.6 3.2 24 170-193 26-49 (201)
452 2gf0_A GTP-binding protein DI- 94.4 0.025 8.5E-07 43.9 3.2 25 169-193 7-31 (199)
453 1gwn_A RHO-related GTP-binding 94.4 0.025 8.6E-07 44.7 3.2 25 169-193 27-51 (205)
454 3tkl_A RAS-related protein RAB 94.4 0.026 8.9E-07 43.7 3.3 25 170-194 16-40 (196)
455 3lxx_A GTPase IMAP family memb 94.4 0.022 7.5E-07 46.1 2.9 25 169-193 28-52 (239)
456 1g8f_A Sulfate adenylyltransfe 94.4 0.042 1.4E-06 49.9 5.0 42 154-195 377-420 (511)
457 1zd9_A ADP-ribosylation factor 94.4 0.026 9.1E-07 43.6 3.3 24 170-193 22-45 (188)
458 2fh5_B SR-beta, signal recogni 94.4 0.026 8.9E-07 44.5 3.3 26 169-194 6-31 (214)
459 2a5j_A RAS-related protein RAB 94.4 0.027 9.1E-07 43.7 3.3 24 170-193 21-44 (191)
460 3qkt_A DNA double-strand break 94.3 0.028 9.6E-07 48.3 3.6 23 170-192 23-45 (339)
461 3reg_A RHO-like small GTPase; 94.3 0.027 9.3E-07 43.7 3.3 25 170-194 23-47 (194)
462 2gf9_A RAS-related protein RAB 94.3 0.027 9.4E-07 43.5 3.3 25 170-194 22-46 (189)
463 3qks_A DNA double-strand break 94.3 0.028 9.5E-07 44.6 3.3 23 170-192 23-45 (203)
464 2o5v_A DNA replication and rep 94.3 0.026 8.7E-07 49.1 3.3 22 171-192 27-48 (359)
465 1t9h_A YLOQ, probable GTPase E 94.3 0.011 3.7E-07 50.3 0.9 24 170-193 173-196 (307)
466 1zbd_A Rabphilin-3A; G protein 94.3 0.025 8.4E-07 44.2 3.0 25 170-194 8-32 (203)
467 3fdi_A Uncharacterized protein 94.3 0.032 1.1E-06 44.2 3.6 26 170-195 6-31 (201)
468 1z06_A RAS-related protein RAB 94.3 0.029 9.8E-07 43.3 3.3 25 169-193 19-43 (189)
469 2p5s_A RAS and EF-hand domain 94.2 0.029 9.9E-07 43.8 3.3 26 168-193 26-51 (199)
470 1qhl_A Protein (cell division 94.2 0.0042 1.4E-07 50.5 -1.7 24 172-195 29-52 (227)
471 3qf4_A ABC transporter, ATP-bi 94.2 0.019 6.5E-07 53.2 2.5 27 168-194 367-393 (587)
472 1x3s_A RAS-related protein RAB 94.2 0.029 1E-06 43.3 3.3 23 171-193 16-38 (195)
473 2o52_A RAS-related protein RAB 94.2 0.024 8.1E-07 44.5 2.7 25 169-193 24-48 (200)
474 1u0j_A DNA replication protein 94.2 0.066 2.2E-06 44.4 5.4 38 156-193 88-127 (267)
475 2q3h_A RAS homolog gene family 94.2 0.024 8.3E-07 44.2 2.8 25 169-193 19-43 (201)
476 2bcg_Y Protein YP2, GTP-bindin 94.2 0.03 1E-06 43.9 3.2 24 170-193 8-31 (206)
477 1w1w_A Structural maintenance 94.1 0.028 9.7E-07 49.9 3.4 24 170-193 26-49 (430)
478 1ksh_A ARF-like protein 2; sma 94.1 0.034 1.2E-06 42.7 3.5 27 168-194 16-42 (186)
479 2axn_A 6-phosphofructo-2-kinas 94.1 0.038 1.3E-06 50.4 4.2 27 169-195 34-60 (520)
480 2fv8_A H6, RHO-related GTP-bin 94.1 0.032 1.1E-06 43.9 3.2 24 170-193 25-48 (207)
481 3qf7_A RAD50; ABC-ATPase, ATPa 94.0 0.034 1.2E-06 48.3 3.6 22 171-192 24-45 (365)
482 2r8r_A Sensor protein; KDPD, P 94.0 0.041 1.4E-06 44.5 3.7 25 171-195 7-31 (228)
483 2qu8_A Putative nucleolar GTP- 94.0 0.032 1.1E-06 44.7 3.2 26 168-193 27-52 (228)
484 2atx_A Small GTP binding prote 94.0 0.033 1.1E-06 43.1 3.2 24 170-193 18-41 (194)
485 2j1l_A RHO-related GTP-binding 94.0 0.027 9.2E-07 44.7 2.7 24 170-193 34-57 (214)
486 3io3_A DEHA2D07832P; chaperone 94.0 0.1 3.5E-06 45.0 6.5 31 165-195 13-43 (348)
487 3cph_A RAS-related protein SEC 94.0 0.035 1.2E-06 43.6 3.3 24 170-193 20-43 (213)
488 2h17_A ADP-ribosylation factor 94.0 0.026 8.9E-07 43.3 2.4 24 170-193 21-44 (181)
489 2orw_A Thymidine kinase; TMTK, 93.9 0.043 1.5E-06 42.8 3.6 24 171-194 4-27 (184)
490 3iqw_A Tail-anchored protein t 93.9 0.1 3.4E-06 44.8 6.2 30 166-195 12-41 (334)
491 2gco_A H9, RHO-related GTP-bin 93.9 0.036 1.2E-06 43.3 3.2 24 170-193 25-48 (201)
492 4bas_A ADP-ribosylation factor 93.9 0.033 1.1E-06 43.2 2.9 25 169-193 16-40 (199)
493 2hup_A RAS-related protein RAB 93.9 0.036 1.2E-06 43.4 3.2 25 169-193 28-52 (201)
494 3szr_A Interferon-induced GTP- 93.9 0.023 7.8E-07 52.9 2.3 26 169-194 44-69 (608)
495 2qmh_A HPR kinase/phosphorylas 93.9 0.029 9.8E-07 44.5 2.5 25 170-194 34-58 (205)
496 2fu5_C RAS-related protein RAB 93.8 0.02 6.7E-07 43.9 1.5 24 170-193 8-31 (183)
497 2j0v_A RAC-like GTP-binding pr 93.8 0.038 1.3E-06 43.5 3.2 24 170-193 9-32 (212)
498 2iw3_A Elongation factor 3A; a 93.8 0.021 7.3E-07 55.8 2.0 25 169-193 698-722 (986)
499 1mky_A Probable GTP-binding pr 93.8 0.069 2.4E-06 47.5 5.2 43 152-194 151-204 (439)
500 2il1_A RAB12; G-protein, GDP, 93.8 0.035 1.2E-06 43.1 3.0 24 170-193 26-49 (192)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.84 E-value=5.7e-21 Score=177.22 Aligned_cols=110 Identities=19% Similarity=0.199 Sum_probs=95.2
Q ss_pred cchHHHHHHHHHHhCC---CCCcEEEEEcCCCCcHHHHHHHHHH--HhccccCCCeEEEEEeCCCC--CHHHHHHHHHHH
Q 045699 152 ESRKSILNDALDALSN---PNVDVIGLCGVGGIGKTTLAKIVCD--QAKKLKVCDEVVFVEVSRTP--DVKRIQGDVADQ 224 (266)
Q Consensus 152 ~gr~~~~~~l~~~l~~---~~~~vi~I~G~~G~GKTtLa~~v~~--~~~~~~~f~~~~wv~v~~~~--~~~~~~~~i~~~ 224 (266)
+||+.++++|.++|.. ...++|+|+||||+||||||+.+|+ +..++.+|++++||++++.+ ++..++..|+.+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 4999999999999853 3689999999999999999999998 56777899999999999985 889999999999
Q ss_pred hcCCC--------CCCCHHHHHHHHHHHHhcCC-eEEEEEeCCCCCC
Q 045699 225 LSLNI--------CEGSESERAMMLCGQLKKGK-KILFVLDNIWTSL 262 (266)
Q Consensus 225 ~~~~~--------~~~~~~~~~~~l~~~L~~~k-r~LlvlDDvw~~~ 262 (266)
++... ...+...+...+++.|.+ | ||||||||||+..
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~-~kr~LlVLDdv~~~~ 256 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALID-RPNTLFVFDDVVQEE 256 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHTT-STTEEEEEEEECCHH
T ss_pred HhcCcccccccccccccHHHHHHHHHHHHcC-CCcEEEEEECCCCch
Confidence 98642 123456678899999997 7 9999999999864
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.71 E-value=6.3e-18 Score=163.04 Aligned_cols=113 Identities=20% Similarity=0.085 Sum_probs=90.6
Q ss_pred ccchHHHHHHHHHHhCC-CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCe-EEEEEeCCCCCHHHHHHHHHHHhcC-
Q 045699 151 FESRKSILNDALDALSN-PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDE-VVFVEVSRTPDVKRIQGDVADQLSL- 227 (266)
Q Consensus 151 ~~gr~~~~~~l~~~l~~-~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~-~~wv~v~~~~~~~~~~~~i~~~~~~- 227 (266)
.+||+.+++.|.++|.. +..++|+|+||||+||||||+.+|++.+++.+|++ ++|+++++.++...++..|+..++.
T Consensus 130 ~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i 209 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhhc
Confidence 49999999999999864 55899999999999999999999998777788986 9999999999998988888875432
Q ss_pred --CCC---C------CCHHHHHHHHHHHH---hcCCeEEEEEeCCCCCCCC
Q 045699 228 --NIC---E------GSESERAMMLCGQL---KKGKKILFVLDNIWTSLDL 264 (266)
Q Consensus 228 --~~~---~------~~~~~~~~~l~~~L---~~~kr~LlvlDDvw~~~~~ 264 (266)
... . .+.+++...|.+.| .+ |||||||||||+...|
T Consensus 210 ~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~-KRvLLVLDDVwd~eqL 259 (1221)
T 1vt4_I 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY-ENCLLVLLNVQNAKAW 259 (1221)
T ss_dssp CSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTT-SSCEEEEESCCCHHHH
T ss_pred CcccccccccccCCCCCHHHHHHHHHHHHHhhcC-CCEEEEEeCcChHHHH
Confidence 111 1 12344566777766 55 9999999999986544
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.65 E-value=1.9e-16 Score=158.68 Aligned_cols=118 Identities=19% Similarity=0.234 Sum_probs=92.3
Q ss_pred CcccccchHHHHHHHHHHhC--CCCCcEEEEEcCCCCcHHHHHHHHHHHhcc-ccCC-CeEEEEEeCCCCC--HHHHHHH
Q 045699 147 GYEAFESRKSILNDALDALS--NPNVDVIGLCGVGGIGKTTLAKIVCDQAKK-LKVC-DEVVFVEVSRTPD--VKRIQGD 220 (266)
Q Consensus 147 ~~~~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~-~~~f-~~~~wv~v~~~~~--~~~~~~~ 220 (266)
+...|+||+.++++|.++|. +...++|+|+||||+||||||+.+|++.+. ..+| +.+.|+++++..+ ....+..
T Consensus 122 ~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 201 (1249)
T 3sfz_A 122 RPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQN 201 (1249)
T ss_dssp CCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHH
T ss_pred CCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHH
Confidence 35679999999999999984 457899999999999999999999998543 3445 6788999998654 3344667
Q ss_pred HHHHhcCCC-----CCCCHHHHHHHHHHHHhcCC--eEEEEEeCCCCCCCCC
Q 045699 221 VADQLSLNI-----CEGSESERAMMLCGQLKKGK--KILFVLDNIWTSLDLE 265 (266)
Q Consensus 221 i~~~~~~~~-----~~~~~~~~~~~l~~~L~~~k--r~LlvlDDvw~~~~~~ 265 (266)
++..+.... ...+..++...++..|.. + ||||||||||+..+|+
T Consensus 202 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~LlvlDd~~~~~~~~ 252 (1249)
T 3sfz_A 202 LCMRLDQEESFSQRLPLNIEEAKDRLRVLMLR-KHPRSLLILDDVWDPWVLK 252 (1249)
T ss_dssp HHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSS-SSCSCEEEEESCCCHHHHT
T ss_pred HHHHhhhhcccccCCCCCHHHHHHHHHHHHhc-cCCCEEEEEecCCCHHHHH
Confidence 777776532 134567788888988887 6 9999999999876554
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.60 E-value=2.7e-15 Score=140.10 Aligned_cols=114 Identities=21% Similarity=0.265 Sum_probs=87.3
Q ss_pred cccccchHHHHHHHHHHhC--CCCCcEEEEEcCCCCcHHHHHHHHHHHhcc-ccCC-CeEEEEEeCCCCCHHHHHHHH--
Q 045699 148 YEAFESRKSILNDALDALS--NPNVDVIGLCGVGGIGKTTLAKIVCDQAKK-LKVC-DEVVFVEVSRTPDVKRIQGDV-- 221 (266)
Q Consensus 148 ~~~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~-~~~f-~~~~wv~v~~~~~~~~~~~~i-- 221 (266)
...|+||+.+++.|.++|. ....++|+|+||||+||||||+.+|++..+ ..+| +.++|++++.. +...++..+
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~~ 201 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQN 201 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHHHH
T ss_pred CCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHHHH
Confidence 5579999999999999986 356789999999999999999999998654 5788 58999999876 344444444
Q ss_pred -HHHhcC-----CCCCCCHHHHHHHHHHHHhcC-CeEEEEEeCCCCCC
Q 045699 222 -ADQLSL-----NICEGSESERAMMLCGQLKKG-KKILFVLDNIWTSL 262 (266)
Q Consensus 222 -~~~~~~-----~~~~~~~~~~~~~l~~~L~~~-kr~LlvlDDvw~~~ 262 (266)
+..++. .....+...+...+...|.+. +++||||||+|+..
T Consensus 202 l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~ 249 (591)
T 1z6t_A 202 LCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSW 249 (591)
T ss_dssp HHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHH
T ss_pred HHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHH
Confidence 345542 112345667778888888752 68999999999754
No 5
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.32 E-value=7.6e-12 Score=91.71 Aligned_cols=56 Identities=14% Similarity=0.196 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHhhhHHH
Q 045699 31 FADLKKKTEKLKLTIEDLQLWVDAAKENG-EEIEQSVERWLISANTTVVEAGKLIED 86 (266)
Q Consensus 31 ~~~l~~el~~l~~~l~~i~~~l~~ae~~~-~~~~~~~~~Wl~~vr~~a~d~ed~ld~ 86 (266)
...++++++.|+..|+.|++++.+++... ...++.++.|+.+||+++||+|||+|+
T Consensus 21 ~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~ 77 (115)
T 3qfl_A 21 HKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDK 77 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555666667777653 224889999999999999999999998
No 6
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.23 E-value=4.4e-11 Score=106.28 Aligned_cols=114 Identities=18% Similarity=0.181 Sum_probs=85.5
Q ss_pred cccccchHHHHHHHHHHh-C----C--CCCcEEEE--EcCCCCcHHHHHHHHHHHhccc---cCCC-eEEEEEeCCCCCH
Q 045699 148 YEAFESRKSILNDALDAL-S----N--PNVDVIGL--CGVGGIGKTTLAKIVCDQAKKL---KVCD-EVVFVEVSRTPDV 214 (266)
Q Consensus 148 ~~~~~gr~~~~~~l~~~l-~----~--~~~~vi~I--~G~~G~GKTtLa~~v~~~~~~~---~~f~-~~~wv~v~~~~~~ 214 (266)
+..++||+.+++.|.+++ . . .....+.| +|++|+|||||++.+++..... ..|+ ..+|+.+....+.
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNL 100 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSH
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCH
Confidence 357899999999998887 3 2 24556666 9999999999999999886431 1233 3578887777889
Q ss_pred HHHHHHHHHHhcCCCC--CCCHHHHHHHHHHHHhc-CCeEEEEEeCCCCC
Q 045699 215 KRIQGDVADQLSLNIC--EGSESERAMMLCGQLKK-GKKILFVLDNIWTS 261 (266)
Q Consensus 215 ~~~~~~i~~~~~~~~~--~~~~~~~~~~l~~~L~~-~kr~LlvlDDvw~~ 261 (266)
..++..|+.+++.... ..+..++...+.+.|.. +++++|||||+|..
T Consensus 101 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l 150 (412)
T 1w5s_A 101 YTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSM 150 (412)
T ss_dssp HHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHH
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHH
Confidence 9999999999976433 33455666777777752 38999999999863
No 7
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.05 E-value=2.2e-09 Score=94.17 Aligned_cols=113 Identities=19% Similarity=0.230 Sum_probs=87.5
Q ss_pred cccccchHHHHHHHHHHhC----CCCCcEEEEEcCCCCcHHHHHHHHHHHhcccc---C-CCeEEEEEeCCCCCHHHHHH
Q 045699 148 YEAFESRKSILNDALDALS----NPNVDVIGLCGVGGIGKTTLAKIVCDQAKKLK---V-CDEVVFVEVSRTPDVKRIQG 219 (266)
Q Consensus 148 ~~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~-f~~~~wv~v~~~~~~~~~~~ 219 (266)
+..++||+.+++.+..++. ......+.|+|++|+||||||+.+++...... . --..+|++++...+...++.
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 97 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVAS 97 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHH
Confidence 3678999999999999873 34567899999999999999999998764210 1 23467888888888999999
Q ss_pred HHHHHhcCCCC--CCCHHHHHHHHHHHHhc-CCeEEEEEeCCCC
Q 045699 220 DVADQLSLNIC--EGSESERAMMLCGQLKK-GKKILFVLDNIWT 260 (266)
Q Consensus 220 ~i~~~~~~~~~--~~~~~~~~~~l~~~L~~-~kr~LlvlDDvw~ 260 (266)
.++.+++.... ..+..++...+...+.. +++.+|||||+..
T Consensus 98 ~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~ 141 (387)
T 2v1u_A 98 AIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDF 141 (387)
T ss_dssp HHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTH
T ss_pred HHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhh
Confidence 99999977433 33466667777777753 3689999999975
No 8
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.04 E-value=5.6e-10 Score=97.92 Aligned_cols=114 Identities=20% Similarity=0.272 Sum_probs=85.8
Q ss_pred cccccchHHHHHHHHHHhC----CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccC-CCeEEEEEeCCCCCHHHHHHHHH
Q 045699 148 YEAFESRKSILNDALDALS----NPNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKV-CDEVVFVEVSRTPDVKRIQGDVA 222 (266)
Q Consensus 148 ~~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~-f~~~~wv~v~~~~~~~~~~~~i~ 222 (266)
+..++||+.+++.+.+++. ......+.|+|++|+|||||++.+++....... --..+|+.++...+...++..++
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~ 98 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLL 98 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHT
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999998886 445679999999999999999999997642211 23567787777777888888888
Q ss_pred HHhcCCCC--CCCHHHHHHHHHHHHhc-CCeEEEEEeCCCCC
Q 045699 223 DQLSLNIC--EGSESERAMMLCGQLKK-GKKILFVLDNIWTS 261 (266)
Q Consensus 223 ~~~~~~~~--~~~~~~~~~~l~~~L~~-~kr~LlvlDDvw~~ 261 (266)
.+++.... ..+..+....+.+.+.. +++.+|||||++..
T Consensus 99 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l 140 (386)
T 2qby_A 99 ESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAF 140 (386)
T ss_dssp TTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHH
T ss_pred HHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhh
Confidence 88765432 33456666777777764 25899999998753
No 9
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.02 E-value=1.2e-09 Score=96.02 Aligned_cols=111 Identities=18% Similarity=0.208 Sum_probs=83.6
Q ss_pred ccccchHHHHHHHHHHhC----CCCCcEEEEEcCCCCcHHHHHHHHHHHhccc----cC--CCeEEEEEeCCCC-CHHHH
Q 045699 149 EAFESRKSILNDALDALS----NPNVDVIGLCGVGGIGKTTLAKIVCDQAKKL----KV--CDEVVFVEVSRTP-DVKRI 217 (266)
Q Consensus 149 ~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~----~~--f~~~~wv~v~~~~-~~~~~ 217 (266)
..++||+.+++.+.+++. ......+.|+|++|+||||||+.+++..... .. ....+|++++... +...+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 678999999998886663 4456789999999999999999999986322 11 3456788877766 88899
Q ss_pred HHHHHHHhc-CCC--CCCCHHHHHHHHHHHHhcCCeEEEEEeCCCC
Q 045699 218 QGDVADQLS-LNI--CEGSESERAMMLCGQLKKGKKILFVLDNIWT 260 (266)
Q Consensus 218 ~~~i~~~~~-~~~--~~~~~~~~~~~l~~~L~~~kr~LlvlDDvw~ 260 (266)
+..++.++. ... ...+..++...+...+.. ++.+|||||++.
T Consensus 100 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~-~~~vlilDEi~~ 144 (384)
T 2qby_B 100 LSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRN-IRAIIYLDEVDT 144 (384)
T ss_dssp HHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSS-SCEEEEEETTHH
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhcc-CCCEEEEECHHH
Confidence 999998883 222 223345667778888887 666999999965
No 10
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.01 E-value=7.6e-10 Score=95.86 Aligned_cols=106 Identities=13% Similarity=0.107 Sum_probs=75.6
Q ss_pred cccccchHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCC------CHHHHHHHH
Q 045699 148 YEAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTP------DVKRIQGDV 221 (266)
Q Consensus 148 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~------~~~~~~~~i 221 (266)
...++||+.+++.|.+++... .++.|+|+.|+|||||++.+.+.. . .+|+.+.... +...++..+
T Consensus 11 ~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~l 81 (350)
T 2qen_A 11 REDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHITREELIKEL 81 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCBCHHHHHHHH
T ss_pred hHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCCCHHHHHHHH
Confidence 456899999999999988643 799999999999999999999864 1 6677665432 566677777
Q ss_pred HHHhcC-----------------CC--CCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCCC
Q 045699 222 ADQLSL-----------------NI--CEGSESERAMMLCGQLKKGKKILFVLDNIWTSL 262 (266)
Q Consensus 222 ~~~~~~-----------------~~--~~~~~~~~~~~l~~~L~~~kr~LlvlDDvw~~~ 262 (266)
...+.. .. ...+..++...+.......++++|||||++...
T Consensus 82 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~ 141 (350)
T 2qen_A 82 QSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLR 141 (350)
T ss_dssp HHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGG
T ss_pred HHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHh
Confidence 665532 11 113445566666666653148999999997643
No 11
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.98 E-value=6.1e-09 Score=91.58 Aligned_cols=113 Identities=21% Similarity=0.255 Sum_probs=85.2
Q ss_pred cccccchHHHHHHHHHHhCC----CCCc--EEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHH
Q 045699 148 YEAFESRKSILNDALDALSN----PNVD--VIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDV 221 (266)
Q Consensus 148 ~~~~~gr~~~~~~l~~~l~~----~~~~--vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 221 (266)
+..++||+.+++.+..++.. .... .+.|+|+.|+|||||++.+.+...... --..+|++++...+...+...+
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~l 94 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT-TARFVYINGFIYRNFTAIIGEI 94 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC-CCEEEEEETTTCCSHHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc-CeeEEEEeCccCCCHHHHHHHH
Confidence 35789999999999888743 3334 899999999999999999999865221 1356778888888888999999
Q ss_pred HHHhcCCCC--CCCHHHHHHHHHHHHhc-CCeEEEEEeCCCCC
Q 045699 222 ADQLSLNIC--EGSESERAMMLCGQLKK-GKKILFVLDNIWTS 261 (266)
Q Consensus 222 ~~~~~~~~~--~~~~~~~~~~l~~~L~~-~kr~LlvlDDvw~~ 261 (266)
+.+++.... ..+..++...+...+.. +++.+|||||+...
T Consensus 95 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l 137 (389)
T 1fnn_A 95 ARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL 137 (389)
T ss_dssp HHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS
T ss_pred HHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc
Confidence 999876433 33456666677766653 36889999998753
No 12
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.77 E-value=3.2e-08 Score=85.72 Aligned_cols=69 Identities=13% Similarity=0.244 Sum_probs=52.3
Q ss_pred cccccchHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCC-----CCHHHHHHHHH
Q 045699 148 YEAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRT-----PDVKRIQGDVA 222 (266)
Q Consensus 148 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~-----~~~~~~~~~i~ 222 (266)
...++||+.+++.|.+ +.. .++.|+|+.|+|||||++.+.+... . ..+|+.+... .+...++..+.
T Consensus 12 ~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~l~ 82 (357)
T 2fna_A 12 RKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELN--L---PYIYLDLRKFEERNYISYKDFLLELQ 82 (357)
T ss_dssp GGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHT--C---CEEEEEGGGGTTCSCCCHHHHHHHHH
T ss_pred HHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcC--C---CEEEEEchhhccccCCCHHHHHHHHH
Confidence 4578999999999999 765 6999999999999999999998764 1 2578877642 34455555554
Q ss_pred HHh
Q 045699 223 DQL 225 (266)
Q Consensus 223 ~~~ 225 (266)
+.+
T Consensus 83 ~~l 85 (357)
T 2fna_A 83 KEI 85 (357)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 13
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.76 E-value=6.9e-08 Score=82.93 Aligned_cols=111 Identities=12% Similarity=0.101 Sum_probs=76.9
Q ss_pred cccchHHHHHHHHHHhC----CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccC---C-C-eEEEEEeCCCCCHHHHHHH
Q 045699 150 AFESRKSILNDALDALS----NPNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKV---C-D-EVVFVEVSRTPDVKRIQGD 220 (266)
Q Consensus 150 ~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f-~-~~~wv~v~~~~~~~~~~~~ 220 (266)
-+.+|+.+.+.|...|. ......+-|+|+.|+|||++++.|.+....... . . ..+++++....+...++..
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~ 100 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEK 100 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHH
Confidence 37899999998887663 567788999999999999999999998753211 1 1 3567777777888999999
Q ss_pred HHHHhcCCC-CCCCHHHHHHHHHHHH---hcCCeEEEEEeCCCCC
Q 045699 221 VADQLSLNI-CEGSESERAMMLCGQL---KKGKKILFVLDNIWTS 261 (266)
Q Consensus 221 i~~~~~~~~-~~~~~~~~~~~l~~~L---~~~kr~LlvlDDvw~~ 261 (266)
|++++.... ......+....+...+ .. +.++|+||++...
T Consensus 101 I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~-~~~ii~lDE~d~l 144 (318)
T 3te6_A 101 IWFAISKENLCGDISLEALNFYITNVPKAKK-RKTLILIQNPENL 144 (318)
T ss_dssp HHHHHSCCC--CCCCHHHHHHHHHHSCGGGS-CEEEEEEECCSSS
T ss_pred HHHHhcCCCCCchHHHHHHHHHHHHhhhccC-CceEEEEecHHHh
Confidence 999996531 1111122233333333 33 7899999998764
No 14
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.69 E-value=1.4e-07 Score=75.81 Aligned_cols=68 Identities=13% Similarity=0.167 Sum_probs=48.8
Q ss_pred cccccchHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHH
Q 045699 148 YEAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVK 215 (266)
Q Consensus 148 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~ 215 (266)
..+++|++..++.+.+++.......+.|+|+.|+|||+||+.+++.......-...+.+..+...+..
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (226)
T 2chg_A 16 LDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGID 83 (226)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHH
T ss_pred HHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChH
Confidence 56789999999999999876666669999999999999999999875322111233444444444433
No 15
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.60 E-value=1.4e-07 Score=74.04 Aligned_cols=48 Identities=17% Similarity=0.260 Sum_probs=42.5
Q ss_pred cccccchHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 148 YEAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 148 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
...++|++.+++.+.+++.......+.|+|+.|+|||+||+.+.+...
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 21 LDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 557899999999999998776677889999999999999999998753
No 16
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.48 E-value=6.8e-07 Score=72.59 Aligned_cols=49 Identities=18% Similarity=0.348 Sum_probs=41.2
Q ss_pred CcccccchHHHHHHHHHHhCCCC-CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 147 GYEAFESRKSILNDALDALSNPN-VDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 147 ~~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
...+++|++..++.+..++.... ...+.|+|++|+||||||+.+++...
T Consensus 21 ~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 21 TFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred cHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 35678999999999998886433 45899999999999999999998765
No 17
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.43 E-value=4.1e-07 Score=71.11 Aligned_cols=49 Identities=20% Similarity=0.229 Sum_probs=42.8
Q ss_pred CcccccchHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 147 GYEAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 147 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
....++|++.+++.+.+.+.......+.|+|+.|+||||||+.+.+...
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 20 KLDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred ccchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 3557899999999999998776677889999999999999999998764
No 18
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.39 E-value=6e-07 Score=76.68 Aligned_cols=49 Identities=18% Similarity=0.239 Sum_probs=42.1
Q ss_pred CcccccchHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 147 GYEAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 147 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
...+++|++..++.+.+++.......+.++|++|+||||+|+.+++...
T Consensus 19 ~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~ 67 (323)
T 1sxj_B 19 VLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELL 67 (323)
T ss_dssp SGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CHHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc
Confidence 3567899999999999998766665699999999999999999998853
No 19
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.23 E-value=3.1e-06 Score=66.35 Aligned_cols=90 Identities=18% Similarity=0.137 Sum_probs=51.5
Q ss_pred hHHHHHHHHHHhCC---CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCC
Q 045699 154 RKSILNDALDALSN---PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNIC 230 (266)
Q Consensus 154 r~~~~~~l~~~l~~---~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~ 230 (266)
....++.+.+++.+ .....+.|+|++|+|||||++.+++.......+. ++++ +..++...+.........
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~-~~~~------~~~~~~~~~~~~~~~~~~ 91 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR-GYFF------DTKDLIFRLKHLMDEGKD 91 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC-CCEE------EHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe-EEEE------EHHHHHHHHHHHhcCchH
Confidence 44445555555432 3467899999999999999999999864222222 2233 344555554443322111
Q ss_pred CCCHHHHHHHHHHHHhcCCeEEEEEeCCCC
Q 045699 231 EGSESERAMMLCGQLKKGKKILFVLDNIWT 260 (266)
Q Consensus 231 ~~~~~~~~~~l~~~L~~~kr~LlvlDDvw~ 260 (266)
. .+.+.+. +.-+|||||++.
T Consensus 92 ~--------~~~~~~~--~~~llilDE~~~ 111 (180)
T 3ec2_A 92 T--------KFLKTVL--NSPVLVLDDLGS 111 (180)
T ss_dssp S--------HHHHHHH--TCSEEEEETCSS
T ss_pred H--------HHHHHhc--CCCEEEEeCCCC
Confidence 1 2223333 355788888874
No 20
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.19 E-value=4e-06 Score=66.84 Aligned_cols=88 Identities=18% Similarity=0.190 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhCCC----CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCC
Q 045699 155 KSILNDALDALSNP----NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNIC 230 (266)
Q Consensus 155 ~~~~~~l~~~l~~~----~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~ 230 (266)
...++.+.+++... ....+.|+|++|+||||||+.+++.... .....+|++++ .+...+...+.
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~--~~~~~~~~~~~------~~~~~~~~~~~---- 102 (202)
T 2w58_A 35 IKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAK--RNVSSLIVYVP------ELFRELKHSLQ---- 102 (202)
T ss_dssp HHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHT--TTCCEEEEEHH------HHHHHHHHC------
T ss_pred HHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEEEhH------HHHHHHHHHhc----
Confidence 34455555555422 1278999999999999999999998753 23345566543 44444433221
Q ss_pred CCCHHHHHHHHHHHHhcCCeEEEEEeCCCC
Q 045699 231 EGSESERAMMLCGQLKKGKKILFVLDNIWT 260 (266)
Q Consensus 231 ~~~~~~~~~~l~~~L~~~kr~LlvlDDvw~ 260 (266)
..+.. .+.+.+.+ . -+|||||++.
T Consensus 103 ~~~~~----~~~~~~~~-~-~~lilDei~~ 126 (202)
T 2w58_A 103 DQTMN----EKLDYIKK-V-PVLMLDDLGA 126 (202)
T ss_dssp -CCCH----HHHHHHHH-S-SEEEEEEECC
T ss_pred cchHH----HHHHHhcC-C-CEEEEcCCCC
Confidence 11111 22334444 3 3899999965
No 21
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.18 E-value=8.6e-06 Score=68.46 Aligned_cols=49 Identities=27% Similarity=0.314 Sum_probs=39.5
Q ss_pred CcccccchHHHHHHHHHHhCC-------------CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 147 GYEAFESRKSILNDALDALSN-------------PNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 147 ~~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
...+++|.+..++.|.+.+.. .....+.|+|+.|+|||+||+.+.+...
T Consensus 15 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 15 RYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 356789999988888776631 3456799999999999999999998754
No 22
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.16 E-value=2.1e-06 Score=73.41 Aligned_cols=49 Identities=16% Similarity=0.215 Sum_probs=42.2
Q ss_pred CcccccchHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 147 GYEAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 147 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
...+++|++..++.+.+++.......+.++|+.|+||||+|+.+++...
T Consensus 23 ~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 23 RLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp STTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred CHHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc
Confidence 3567899999999999988766666799999999999999999998753
No 23
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.08 E-value=3.6e-05 Score=66.17 Aligned_cols=47 Identities=26% Similarity=0.249 Sum_probs=36.4
Q ss_pred cccccchHHHHHHHHHHhC------------CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 148 YEAFESRKSILNDALDALS------------NPNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 148 ~~~~~gr~~~~~~l~~~l~------------~~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
..++.|.+..++.|.+.+. ....+-+.++|+.|+|||+||+.+.+..
T Consensus 11 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 11 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 5567888887777766541 1234678999999999999999999975
No 24
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.08 E-value=2.4e-05 Score=64.73 Aligned_cols=48 Identities=23% Similarity=0.220 Sum_probs=35.2
Q ss_pred cccccchHHHHHHHHHHh---CC---------CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 148 YEAFESRKSILNDALDAL---SN---------PNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 148 ~~~~~gr~~~~~~l~~~l---~~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
..+++|.+..++.|.+++ .. .....+.|+|+.|+|||+||+.+.+...
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~ 64 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQ 64 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 456778777766665443 21 2345688999999999999999999764
No 25
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.03 E-value=4.9e-05 Score=64.22 Aligned_cols=48 Identities=19% Similarity=0.214 Sum_probs=38.4
Q ss_pred cccccchHHHHHHHHHHhCC------------CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 148 YEAFESRKSILNDALDALSN------------PNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 148 ~~~~~gr~~~~~~l~~~l~~------------~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
..+++|.+..++.|.+.+.. .....+.|+|+.|+||||||+.+.+...
T Consensus 20 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~ 79 (297)
T 3b9p_A 20 WTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECS 79 (297)
T ss_dssp GGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred HHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 56788998888888776521 2356889999999999999999998753
No 26
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.02 E-value=2.9e-05 Score=69.82 Aligned_cols=51 Identities=25% Similarity=0.389 Sum_probs=41.6
Q ss_pred cCCcccccchHHHH---HHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 145 SEGYEAFESRKSIL---NDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 145 ~~~~~~~~gr~~~~---~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
+....+++|.+..+ ..|...+.......+.++|+.|+||||||+.+.+...
T Consensus 22 P~~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~ 75 (447)
T 3pvs_A 22 PENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYAN 75 (447)
T ss_dssp CCSTTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCCHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhC
Confidence 33466788988877 6677777666678899999999999999999999764
No 27
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.01 E-value=1.1e-05 Score=68.55 Aligned_cols=48 Identities=15% Similarity=0.222 Sum_probs=41.7
Q ss_pred CcccccchHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 147 GYEAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 147 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
...+++|++..++.+.+++.......+.++|+.|+|||++|+.+.+..
T Consensus 15 ~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 15 TLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp SGGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHH
T ss_pred CHHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHh
Confidence 356789999999999998877666669999999999999999999875
No 28
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.95 E-value=1.6e-05 Score=67.98 Aligned_cols=66 Identities=15% Similarity=0.216 Sum_probs=46.2
Q ss_pred CcccccchHHHHHHHHHHhC-----CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHH
Q 045699 147 GYEAFESRKSILNDALDALS-----NPNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRI 217 (266)
Q Consensus 147 ~~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~ 217 (266)
...+++|++..+..+..++. ......+.|+|+.|+|||+||+.+++... ....+++.+......++
T Consensus 10 ~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~-----~~~~~~~~~~~~~~~~l 80 (324)
T 1hqc_A 10 TLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELG-----VNLRVTSGPAIEKPGDL 80 (324)
T ss_dssp STTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHT-----CCEEEECTTTCCSHHHH
T ss_pred cHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhC-----CCEEEEeccccCChHHH
Confidence 35678999988888877764 23456789999999999999999998763 12344554444343333
No 29
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.94 E-value=1.5e-05 Score=67.70 Aligned_cols=47 Identities=17% Similarity=0.208 Sum_probs=35.0
Q ss_pred cccchHHHHHHHHHHhC---------------CCCCcEEEEEcCCCCcHHHHHHHHHHHhcc
Q 045699 150 AFESRKSILNDALDALS---------------NPNVDVIGLCGVGGIGKTTLAKIVCDQAKK 196 (266)
Q Consensus 150 ~~~gr~~~~~~l~~~l~---------------~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 196 (266)
.++|.+..++.|.+++. ......+.|+|+.|+|||+||+.+.+....
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~ 93 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHR 93 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 46777777766665432 234557999999999999999999887653
No 30
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.94 E-value=6.8e-05 Score=64.36 Aligned_cols=48 Identities=27% Similarity=0.294 Sum_probs=38.3
Q ss_pred cccccchHHHHHHHHHHhC------------CCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 148 YEAFESRKSILNDALDALS------------NPNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 148 ~~~~~gr~~~~~~l~~~l~------------~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
..+++|.+..++.|.+.+. .....-+.++|+.|+|||+||+.+.+...
T Consensus 17 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~ 76 (322)
T 3eie_A 17 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN 76 (322)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHT
T ss_pred HHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHC
Confidence 5678899888888877661 11245789999999999999999998754
No 31
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.93 E-value=4.7e-05 Score=66.36 Aligned_cols=48 Identities=21% Similarity=0.212 Sum_probs=38.2
Q ss_pred cccccchHHHHHHHHHHhC------------CCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 148 YEAFESRKSILNDALDALS------------NPNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 148 ~~~~~gr~~~~~~l~~~l~------------~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
..+++|.+..++.|.+.+. ......+.|+|+.|+|||+||+.+.+...
T Consensus 83 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~ 142 (357)
T 3d8b_A 83 WEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSG 142 (357)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTT
T ss_pred HHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcC
Confidence 4568899888888877652 12456899999999999999999998753
No 32
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.90 E-value=0.00013 Score=59.41 Aligned_cols=94 Identities=12% Similarity=0.115 Sum_probs=60.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhcccc----CCCeEEEEEeCCCCCHHHHHHHHHHHhcCCC----------CCCCH
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLK----VCDEVVFVEVSRTPDVKRIQGDVADQLSLNI----------CEGSE 234 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~----~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~----------~~~~~ 234 (266)
.-.++.|+|++|+|||||++.+........ .-..++|+.....+....+. .++.+++... ...+.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNT 101 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCH
Confidence 467999999999999999999988532111 13568888877765655443 4455554321 12233
Q ss_pred HH---HHHHHHHHHhcCCeEEEEEeCCCCCCC
Q 045699 235 SE---RAMMLCGQLKKGKKILFVLDNIWTSLD 263 (266)
Q Consensus 235 ~~---~~~~l~~~L~~~kr~LlvlDDvw~~~~ 263 (266)
.+ ....+.+.+...+.-+||||++....+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~ 133 (243)
T 1n0w_A 102 DHQTQLLYQASAMMVESRYALLIVDSATALYR 133 (243)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEeCchHHHH
Confidence 33 233455555533778999999887654
No 33
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.90 E-value=3.6e-05 Score=65.50 Aligned_cols=48 Identities=19% Similarity=0.304 Sum_probs=37.2
Q ss_pred cccccchHHHHHHHHHHhC-------------CCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 148 YEAFESRKSILNDALDALS-------------NPNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 148 ~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
..++.|.+..++.|.+++. -.....+.|+|+.|+|||+||+.+.+...
T Consensus 14 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 14 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 4567888877777766542 13456799999999999999999999764
No 34
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.90 E-value=9.9e-05 Score=59.17 Aligned_cols=88 Identities=19% Similarity=0.115 Sum_probs=56.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcC------------CCCCCC-HH
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSL------------NICEGS-ES 235 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~------------~~~~~~-~~ 235 (266)
...++.|+|++|+|||||+..+.. . .-..++|++....++...+.. ++..++. ...... ..
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-~----~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-L----SGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQR 92 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-H----HCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-H----cCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHH
Confidence 457999999999999999999988 2 124678888777666665543 3333322 111111 12
Q ss_pred HHHHHHHHHHhcCCeEEEEEeCCCCCCC
Q 045699 236 ERAMMLCGQLKKGKKILFVLDNIWTSLD 263 (266)
Q Consensus 236 ~~~~~l~~~L~~~kr~LlvlDDvw~~~~ 263 (266)
.....+...+.. +.-+||||.+....+
T Consensus 93 ~~~~~~~~l~~~-~~~lliiD~~~~~l~ 119 (220)
T 2cvh_A 93 RVIGSLKKTVDS-NFALVVVDSITAHYR 119 (220)
T ss_dssp HHHHHHHHHCCT-TEEEEEEECCCCCTT
T ss_pred HHHHHHHHHhhc-CCCEEEEcCcHHHhh
Confidence 334444445544 578999999987654
No 35
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.88 E-value=4.4e-05 Score=74.13 Aligned_cols=47 Identities=17% Similarity=0.254 Sum_probs=41.5
Q ss_pred cccccchHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 148 YEAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 148 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
..+++||+.++..+++.|.......+.++|++|+||||||+.+.+..
T Consensus 169 ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 169 LDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp SCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 56789999999999999876666678899999999999999999876
No 36
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.88 E-value=8.2e-05 Score=64.82 Aligned_cols=48 Identities=27% Similarity=0.294 Sum_probs=36.8
Q ss_pred cccccchHHHHHHHHHHhC------------CCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 148 YEAFESRKSILNDALDALS------------NPNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 148 ~~~~~gr~~~~~~l~~~l~------------~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
..+++|.+..++.|.+.+. .....-+.++|+.|+|||+||+.+.+...
T Consensus 50 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~ 109 (355)
T 2qp9_X 50 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN 109 (355)
T ss_dssp GGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Confidence 5568888888777776651 11234588999999999999999999864
No 37
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.86 E-value=2.5e-05 Score=71.53 Aligned_cols=48 Identities=27% Similarity=0.277 Sum_probs=40.9
Q ss_pred CcccccchHHHHHHHHHHhCC-----------------CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 147 GYEAFESRKSILNDALDALSN-----------------PNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 147 ~~~~~~gr~~~~~~l~~~l~~-----------------~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
...+++|++..++.|.+|+.. ...+.+.|+|+.|+||||+|+.+.+..
T Consensus 37 ~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 37 NLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 466789999999999998853 134789999999999999999999876
No 38
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.83 E-value=0.00016 Score=69.19 Aligned_cols=48 Identities=23% Similarity=0.286 Sum_probs=42.4
Q ss_pred cccccchHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 148 YEAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 148 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
...++||+.+++.+++.|.......+.++|+.|+|||++|+.+.+...
T Consensus 185 ~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~ 232 (758)
T 1r6b_X 185 IDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIV 232 (758)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHH
Confidence 456899999999999999876777889999999999999999998753
No 39
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.83 E-value=0.00014 Score=64.13 Aligned_cols=48 Identities=21% Similarity=0.252 Sum_probs=38.8
Q ss_pred CcccccchHHHHHHHHHHhC------------CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 147 GYEAFESRKSILNDALDALS------------NPNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 147 ~~~~~~gr~~~~~~l~~~l~------------~~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
...+++|.+..++.|..++. ......+.|+|+.|+|||+||+.+.+..
T Consensus 113 ~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 113 KFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred ChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 36678999999888887762 1234689999999999999999998864
No 40
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.81 E-value=8.6e-05 Score=66.69 Aligned_cols=47 Identities=26% Similarity=0.249 Sum_probs=37.8
Q ss_pred cccccchHHHHHHHHHHhC------------CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 148 YEAFESRKSILNDALDALS------------NPNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 148 ~~~~~gr~~~~~~l~~~l~------------~~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
..+++|.+..++.|.+.+. ....+-+.++|+.|+|||+||+.+++..
T Consensus 133 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 133 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp GGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 5668898888888877652 1234678999999999999999999975
No 41
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.81 E-value=8.7e-05 Score=61.36 Aligned_cols=49 Identities=22% Similarity=0.287 Sum_probs=34.8
Q ss_pred CcccccchHHHHHHHHHH---hCC---------CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 147 GYEAFESRKSILNDALDA---LSN---------PNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 147 ~~~~~~gr~~~~~~l~~~---l~~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
...+++|.+..++.+.+. +.. ....-+.|+|+.|+||||||+.+.+...
T Consensus 10 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 10 TFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp CGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 355678877766655443 321 1234588999999999999999998764
No 42
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.80 E-value=1.8e-05 Score=59.77 Aligned_cols=45 Identities=20% Similarity=0.208 Sum_probs=32.8
Q ss_pred cccchHHHHHHHHHHhC--CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 150 AFESRKSILNDALDALS--NPNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 150 ~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
+++|+...+..+.+.+. ......|.|+|..|+|||++|+.+++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 35677677777766553 2334567899999999999999999864
No 43
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.79 E-value=7.6e-05 Score=64.21 Aligned_cols=49 Identities=29% Similarity=0.448 Sum_probs=40.1
Q ss_pred CcccccchHHHHHHHHHHhC-----CCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 147 GYEAFESRKSILNDALDALS-----NPNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 147 ~~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
...+++|++..++.+..++. ......+.|+|+.|+|||+||+.+.+...
T Consensus 27 ~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~ 80 (338)
T 3pfi_A 27 NFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMS 80 (338)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 46678999998888888774 24456789999999999999999988653
No 44
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.79 E-value=7.6e-05 Score=66.96 Aligned_cols=39 Identities=23% Similarity=0.348 Sum_probs=29.2
Q ss_pred HHHHHHHHhCCCC-CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 157 ILNDALDALSNPN-VDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 157 ~~~~l~~~l~~~~-~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
....+......+. ...+.|+|++|+||||||+.+++...
T Consensus 116 a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~ 155 (440)
T 2z4s_A 116 AYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVV 155 (440)
T ss_dssp HHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 3344444443333 67899999999999999999999864
No 45
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.77 E-value=9.8e-05 Score=64.22 Aligned_cols=48 Identities=15% Similarity=0.192 Sum_probs=37.0
Q ss_pred cccccchHHHHHH---HHHHhCCCC--CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 148 YEAFESRKSILND---ALDALSNPN--VDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 148 ~~~~~gr~~~~~~---l~~~l~~~~--~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
..+++|++..++. +.+.+.... ...+.|+|+.|+|||+||+.+.+...
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5678998887665 444444333 35899999999999999999999875
No 46
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.77 E-value=9.2e-05 Score=64.36 Aligned_cols=48 Identities=19% Similarity=0.363 Sum_probs=40.2
Q ss_pred cccccchHHHHHHHHHHhCCCC-CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 148 YEAFESRKSILNDALDALSNPN-VDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 148 ~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
..+++|++..++.+.+++.... ...+.|+|+.|+||||+|+.+.+...
T Consensus 15 ~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp TTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred hhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5568999999999988886443 35688999999999999999988764
No 47
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.74 E-value=3.5e-05 Score=65.90 Aligned_cols=70 Identities=13% Similarity=0.168 Sum_probs=47.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEe--CCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhc
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEV--SRTPDVKRIQGDVADQLSLNICEGSESERAMMLCGQLKK 247 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~L~~ 247 (266)
..++.|+|++|+||||||..+..... ..+.|++. +...+. ...+.++....+.+.+..
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~~G-----~~VlyIs~~~eE~v~~---------------~~~~le~~l~~i~~~l~~ 182 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEALG-----GKDKYATVRFGEPLSG---------------YNTDFNVFVDDIARAMLQ 182 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHHHH-----TTSCCEEEEBSCSSTT---------------CBCCHHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhCC-----CCEEEEEecchhhhhh---------------hhcCHHHHHHHHHHHHhh
Confidence 45678999999999999999987621 23456666 322111 013445566667777777
Q ss_pred CCeEEEEEeCCCCC
Q 045699 248 GKKILFVLDNIWTS 261 (266)
Q Consensus 248 ~kr~LlvlDDvw~~ 261 (266)
.+ +||+|++...
T Consensus 183 -~~-LLVIDsI~aL 194 (331)
T 2vhj_A 183 -HR-VIVIDSLKNV 194 (331)
T ss_dssp -CS-EEEEECCTTT
T ss_pred -CC-EEEEeccccc
Confidence 66 9999998764
No 48
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.68 E-value=8.1e-05 Score=56.57 Aligned_cols=40 Identities=20% Similarity=0.259 Sum_probs=29.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCC
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSR 210 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~ 210 (266)
....+.|+|+.|+|||||++.+++..... .+ ..+++....
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~-g~-~~~~~~~~~ 74 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEA-GK-NAAYIDAAS 74 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTT-TC-CEEEEETTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhc-CC-cEEEEcHHH
Confidence 56789999999999999999999986532 11 255665443
No 49
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.65 E-value=8.9e-05 Score=67.05 Aligned_cols=48 Identities=23% Similarity=0.306 Sum_probs=41.8
Q ss_pred cccccchHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 148 YEAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 148 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
..+++|++.+++.++..+.......+.++|++|+|||++|+.+.....
T Consensus 179 ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~ 226 (468)
T 3pxg_A 179 LDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQII 226 (468)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHH
T ss_pred CCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 456899999999999998766666778999999999999999998853
No 50
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.64 E-value=0.00016 Score=62.46 Aligned_cols=48 Identities=10% Similarity=0.183 Sum_probs=40.0
Q ss_pred cccccchHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 148 YEAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 148 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
...++|.+..++.|..++...+...+.++|+.|+||||+|+.+.+...
T Consensus 24 ~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 24 LDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 456788888888888888766665699999999999999999998754
No 51
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.63 E-value=0.00036 Score=59.61 Aligned_cols=49 Identities=20% Similarity=0.171 Sum_probs=40.4
Q ss_pred CCcccccchHHHHHHHHHHhCCCCC-cEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 146 EGYEAFESRKSILNDALDALSNPNV-DVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 146 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
....+++|.+..+..+.+++..... .++.+.|+.|+|||++|+.+.+..
T Consensus 23 ~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l 72 (324)
T 3u61_B 23 STIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV 72 (324)
T ss_dssp CSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT
T ss_pred CCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 3467789999999999998875544 567777889999999999998875
No 52
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.62 E-value=0.00033 Score=62.55 Aligned_cols=48 Identities=23% Similarity=0.306 Sum_probs=36.8
Q ss_pred cccccchHHHHHHHHHHhC----C---------CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 148 YEAFESRKSILNDALDALS----N---------PNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 148 ~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
+.++.|.+..++.|.+.+. . ...+=|.++|++|+|||+||+.+.+...
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~ 240 (437)
T 4b4t_L 180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIG 240 (437)
T ss_dssp SGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred hhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 5567788877776655442 1 2356788999999999999999999865
No 53
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.62 E-value=0.0002 Score=65.10 Aligned_cols=47 Identities=23% Similarity=0.320 Sum_probs=37.3
Q ss_pred cccccchHHHHHHHHHHhC-------------CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 148 YEAFESRKSILNDALDALS-------------NPNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 148 ~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
..+++|.+..++.|.+++. .....-+.|+|+.|+|||+||+.+.+..
T Consensus 203 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp GGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 4568898888888777653 2345678999999999999999998865
No 54
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.61 E-value=0.00052 Score=55.26 Aligned_cols=92 Identities=16% Similarity=0.177 Sum_probs=54.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhcccc----CCCeEEEEEeCCCCCHHHHHHHHHHHhcCCC----------CCCCH
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLK----VCDEVVFVEVSRTPDVKRIQGDVADQLSLNI----------CEGSE 234 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~----~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~----------~~~~~ 234 (266)
.-.+++|+|++|+|||||++.+........ .....+|+.-...+.... +..+++.++... ...+.
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNRGLDPDEVLKHIYVARAFNS 102 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHH-HHHHHHHTTSCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHH-HHHHHHHcCCCHHHHhhcEEEEecCCh
Confidence 457999999999999999999987533211 134577877655444443 334445443311 01111
Q ss_pred ---HHHHHHHHHHHh-----cCCeEEEEEeCCCCC
Q 045699 235 ---SERAMMLCGQLK-----KGKKILFVLDNIWTS 261 (266)
Q Consensus 235 ---~~~~~~l~~~L~-----~~kr~LlvlDDvw~~ 261 (266)
......+...+. ..+.-+||||++...
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~ 137 (231)
T 4a74_A 103 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSH 137 (231)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCceeEEEECChHHH
Confidence 112333444444 336779999987653
No 55
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.61 E-value=0.00027 Score=62.30 Aligned_cols=48 Identities=21% Similarity=0.346 Sum_probs=36.9
Q ss_pred cccccchHHHHHHHHHHhC----C---------CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 148 YEAFESRKSILNDALDALS----N---------PNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 148 ~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
+.++.|.+..++.|.+.+. . ...+=+.++|++|+|||.||+.+.+...
T Consensus 147 ~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~ 207 (405)
T 4b4t_J 147 YDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTD 207 (405)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhC
Confidence 5667888887777765442 1 2346688999999999999999999865
No 56
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.58 E-value=0.00042 Score=60.28 Aligned_cols=87 Identities=20% Similarity=0.270 Sum_probs=59.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCC------CCCCHHHHHHHHH
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNI------CEGSESERAMMLC 242 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~l~ 242 (266)
.-.++.|+|++|+|||||+..+....... -..++|+.....++.. .+++++... ...+.++....+.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~~--gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQKM--GGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 45799999999999999999998875422 2357788877777654 455565532 1234556666666
Q ss_pred HHHhcCCeEEEEEeCCCCCC
Q 045699 243 GQLKKGKKILFVLDNIWTSL 262 (266)
Q Consensus 243 ~~L~~~kr~LlvlDDvw~~~ 262 (266)
..++.++.-++|+|.+-...
T Consensus 133 ~l~~~~~~dlvVIDSi~~l~ 152 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSVAALV 152 (356)
T ss_dssp HHHHTSCCSEEEEECTTTCC
T ss_pred HHhhhcCCCeEEehHhhhhc
Confidence 66654356689999886543
No 57
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.55 E-value=0.00012 Score=70.24 Aligned_cols=47 Identities=23% Similarity=0.328 Sum_probs=41.7
Q ss_pred cccccchHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 148 YEAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 148 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
..+++|++.+++.+...|......-+.++|++|+|||++|+.+.+..
T Consensus 179 ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 179 LDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 45789999999999999876666678899999999999999999885
No 58
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.55 E-value=0.00031 Score=62.62 Aligned_cols=48 Identities=21% Similarity=0.295 Sum_probs=37.9
Q ss_pred cccccchHHHHHHHHHHhC----C---------CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 148 YEAFESRKSILNDALDALS----N---------PNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 148 ~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
+.++.|.+..++.|.+.+. . ...+=|.++|++|+|||.||+.+.+...
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~ 240 (434)
T 4b4t_M 180 YSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTN 240 (434)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred hHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhC
Confidence 5667888888877766531 1 2356789999999999999999999865
No 59
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.55 E-value=0.00032 Score=56.52 Aligned_cols=89 Identities=18% Similarity=0.180 Sum_probs=52.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCC-------------------
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNI------------------- 229 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~------------------- 229 (266)
.-.++.|+|++|+|||||++.+....... -..+.|+.... ....+...+. +++...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~--~~~v~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRD--GDPCIYVTTEE--SRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEKE 96 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHH--TCCEEEEESSS--CHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC----
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHC--CCeEEEEEccc--CHHHHHHHHH-HhcchHHHHhhCCEEEEeccccccC
Confidence 45799999999999999999998665322 12455655433 3444444332 343211
Q ss_pred -----CCCCHHHHHHHHHHHHhcCC--eEEEEEeCCCCCC
Q 045699 230 -----CEGSESERAMMLCGQLKKGK--KILFVLDNIWTSL 262 (266)
Q Consensus 230 -----~~~~~~~~~~~l~~~L~~~k--r~LlvlDDvw~~~ 262 (266)
...+..++...+...+...+ ..+||||.+....
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~ 136 (235)
T 2w0m_A 97 DQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALF 136 (235)
T ss_dssp CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGS
T ss_pred ceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhh
Confidence 11244555555555543213 3499999987543
No 60
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.55 E-value=0.00028 Score=60.41 Aligned_cols=38 Identities=32% Similarity=0.314 Sum_probs=28.8
Q ss_pred HHHHHHHhCCC--CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 158 LNDALDALSNP--NVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 158 ~~~l~~~l~~~--~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
...+..++..+ ....+.|+|+.|+||||||+.+++...
T Consensus 23 ~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~ 62 (324)
T 1l8q_A 23 YEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAK 62 (324)
T ss_dssp HHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHH
Confidence 34444444333 357899999999999999999999864
No 61
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.54 E-value=0.00044 Score=58.03 Aligned_cols=93 Identities=20% Similarity=0.255 Sum_probs=55.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhcccc---CCC----------------eEEEEEeCCCC-------CHH-------
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLK---VCD----------------EVVFVEVSRTP-------DVK------- 215 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~f~----------------~~~wv~v~~~~-------~~~------- 215 (266)
.-.+++|+|++|+|||||++.+..-..... .|+ .+.+ +.|.+ +..
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~--v~Q~~~~~~~~~tv~e~l~~~~ 110 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGI--VFQDPDNQLFSASVYQDVSFGA 110 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEE--ECSSGGGTCCSSBHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEE--EEcCcccccccCcHHHHHHHHH
Confidence 467999999999999999999976432110 010 1222 23321 111
Q ss_pred -----------HHHHHHHHHhcCC------CCCCCHHHHH-HHHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699 216 -----------RIQGDVADQLSLN------ICEGSESERA-MMLCGQLKKGKKILFVLDNIWTSLDL 264 (266)
Q Consensus 216 -----------~~~~~i~~~~~~~------~~~~~~~~~~-~~l~~~L~~~kr~LlvlDDvw~~~~~ 264 (266)
+-..++++.++.. ....|..+.+ -.|...|-. +.=+|+||+..+.+|.
T Consensus 111 ~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~-~P~lLlLDEPts~LD~ 176 (275)
T 3gfo_A 111 VNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVM-EPKVLILDEPTAGLDP 176 (275)
T ss_dssp HTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTT-CCSEEEEECTTTTCCH
T ss_pred HHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHc-CCCEEEEECccccCCH
Confidence 1223445555542 2245644443 456777777 8889999999988764
No 62
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.53 E-value=0.0002 Score=57.95 Aligned_cols=61 Identities=20% Similarity=0.334 Sum_probs=42.2
Q ss_pred cccccch---HHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCC
Q 045699 148 YEAFESR---KSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSR 210 (266)
Q Consensus 148 ~~~~~gr---~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~ 210 (266)
..++++. ...++.+..++.......+.|+|+.|+||||||+.+.+..... .....|++++.
T Consensus 27 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~--~~~~~~~~~~~ 90 (242)
T 3bos_A 27 FTSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANEL--ERRSFYIPLGI 90 (242)
T ss_dssp TTTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEEGGG
T ss_pred hhhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEHHH
Confidence 3455542 3556666666655567889999999999999999999886532 33456666543
No 63
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.52 E-value=0.00047 Score=61.40 Aligned_cols=48 Identities=25% Similarity=0.286 Sum_probs=37.2
Q ss_pred cccccchHHHHHHHHHHhC----C---------CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 148 YEAFESRKSILNDALDALS----N---------PNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 148 ~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
+.++.|.+..++.|.+.+. . ...+=+.++|++|+|||+||+.+.+...
T Consensus 171 ~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~ 231 (428)
T 4b4t_K 171 YADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTK 231 (428)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHT
T ss_pred HHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 5667888888777766542 1 2345689999999999999999999865
No 64
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.51 E-value=0.00055 Score=57.33 Aligned_cols=48 Identities=27% Similarity=0.308 Sum_probs=32.5
Q ss_pred cccccchHHHHHHHHHHhC----C---------CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 148 YEAFESRKSILNDALDALS----N---------PNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 148 ~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
..++.|.+..++.|.+.+. . .-.+=+.++|++|+|||||++.+.+...
T Consensus 9 ~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~ 69 (274)
T 2x8a_A 9 WADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESG 69 (274)
T ss_dssp ---CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcC
Confidence 4567777777776655432 1 1112299999999999999999998754
No 65
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.51 E-value=0.00056 Score=55.71 Aligned_cols=27 Identities=22% Similarity=0.461 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
.-.+++|+|++|+|||||.+.+..-.+
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 467999999999999999999987643
No 66
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.50 E-value=0.00071 Score=56.14 Aligned_cols=94 Identities=19% Similarity=0.263 Sum_probs=56.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhcccc---CCC-------------eEEEEEeCCCC------CHHH---------
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLK---VCD-------------EVVFVEVSRTP------DVKR--------- 216 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~f~-------------~~~wv~v~~~~------~~~~--------- 216 (266)
..-.+++|+|++|+|||||.+.+..-.+... .|+ .+.+ +.|.+ +..+
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~--v~q~~~l~~~ltv~enl~~~~~~~ 116 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISY--LPEEAGAYRNMQGIEYLRFVAGFY 116 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEE--ECTTCCCCTTSBHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEE--EcCCCCCCCCCcHHHHHHHHHHHc
Confidence 3567999999999999999999977533210 010 1222 33321 1111
Q ss_pred ---------HHHHHHHHhcCC------CCCCCHHHHH-HHHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699 217 ---------IQGDVADQLSLN------ICEGSESERA-MMLCGQLKKGKKILFVLDNIWTSLDL 264 (266)
Q Consensus 217 ---------~~~~i~~~~~~~------~~~~~~~~~~-~~l~~~L~~~kr~LlvlDDvw~~~~~ 264 (266)
-..++++.++.. ....|..+.+ -.|...|-. +.=+|+||+..+.+|.
T Consensus 117 ~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~-~p~lllLDEPts~LD~ 179 (256)
T 1vpl_A 117 ASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMV-NPRLAILDEPTSGLDV 179 (256)
T ss_dssp CCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTT-CCSEEEEESTTTTCCH
T ss_pred CCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHc-CCCEEEEeCCccccCH
Confidence 123445555542 2245644433 345667776 7889999999988764
No 67
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.50 E-value=0.00068 Score=59.44 Aligned_cols=94 Identities=22% Similarity=0.265 Sum_probs=56.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhcccc---CCC------------eEEEEEeCCCC------CH------------
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLK---VCD------------EVVFVEVSRTP------DV------------ 214 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~f~------------~~~wv~v~~~~------~~------------ 214 (266)
..-.+++|+|++|+|||||.+.+..-.+... .|+ .+. .|.|.+ +.
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig--~VfQ~~~l~p~ltV~eni~~~~~~~~ 104 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVG--MVFQSYALYPHLSVAENMSFGLKLAG 104 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEE--EECTTCCCCTTSCHHHHHTHHHHHTT
T ss_pred CCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEE--EEecCCcCCCCCCHHHHHHHHHHHcC
Confidence 3467999999999999999999977543210 010 112 223322 11
Q ss_pred ------HHHHHHHHHHhcCC------CCCCCHHHHH-HHHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699 215 ------KRIQGDVADQLSLN------ICEGSESERA-MMLCGQLKKGKKILFVLDNIWTSLDL 264 (266)
Q Consensus 215 ------~~~~~~i~~~~~~~------~~~~~~~~~~-~~l~~~L~~~kr~LlvlDDvw~~~~~ 264 (266)
.+-..++++.++.. ....|..+.+ -.|...|-. +.=+|+||+..+.+|.
T Consensus 105 ~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~-~P~lLLLDEPts~LD~ 166 (381)
T 3rlf_A 105 AKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVA-EPSVFLLDEPLSNLDA 166 (381)
T ss_dssp CCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHH-CCSEEEEESTTTTSCH
T ss_pred CCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHc-CCCEEEEECCCcCCCH
Confidence 12233455555552 2345644433 346666666 7779999999988763
No 68
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.50 E-value=0.00073 Score=60.48 Aligned_cols=48 Identities=23% Similarity=0.268 Sum_probs=37.3
Q ss_pred cccccchHHHHHHHHHHhC-------------CCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 148 YEAFESRKSILNDALDALS-------------NPNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 148 ~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
+.++.|.+..++.|.+.+. -...+=|.++|++|+|||+||+.+.+...
T Consensus 208 ~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~ 268 (467)
T 4b4t_H 208 YSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTD 268 (467)
T ss_dssp CSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHT
T ss_pred HHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccC
Confidence 4567788888777765431 13467788999999999999999999865
No 69
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.49 E-value=0.00046 Score=56.59 Aligned_cols=28 Identities=21% Similarity=0.427 Sum_probs=24.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
..-.+++|+|++|+|||||++.+..-.+
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLAEMD 56 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTCSE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3567999999999999999999987643
No 70
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.49 E-value=3.6e-05 Score=57.97 Aligned_cols=45 Identities=11% Similarity=0.096 Sum_probs=30.6
Q ss_pred cccchHHHHHHHHHHhCC--CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 150 AFESRKSILNDALDALSN--PNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 150 ~~~gr~~~~~~l~~~l~~--~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
+++|+...+..+.+.+.. .....|.|+|..|+|||++|+.+++..
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 356666666666655431 234557899999999999999998754
No 71
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.48 E-value=0.00089 Score=57.94 Aligned_cols=92 Identities=20% Similarity=0.330 Sum_probs=60.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhcccc----CCCeEEEEEeCCCCCHHHHHHHHHHHhcCCC----------CCCC
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLK----VCDEVVFVEVSRTPDVKRIQGDVADQLSLNI----------CEGS 233 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~----~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~----------~~~~ 233 (266)
....++.|+|..|+||||||..+........ .-..++|++....+++..+. .++..++... ...+
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~-~~~~~~g~~~~~~l~~l~~~~~~~ 198 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLR-DIADRFNVDHDAVLDNVLYARAYT 198 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHcCCCHHHHHhceeEeecCC
Confidence 3467999999999999999999987643211 23468899998888877654 4455554421 1111
Q ss_pred ---HHHHHHHHHHHHhc--CCeEEEEEeCCCC
Q 045699 234 ---ESERAMMLCGQLKK--GKKILFVLDNIWT 260 (266)
Q Consensus 234 ---~~~~~~~l~~~L~~--~kr~LlvlDDvw~ 260 (266)
..++...+...+.. ++--+||+|.+..
T Consensus 199 ~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~ 230 (343)
T 1v5w_A 199 SEHQMELLDYVAAKFHEEAGIFKLLIIDSIMA 230 (343)
T ss_dssp TTHHHHHHHHHHHHHHHSCSSEEEEEEETSGG
T ss_pred HHHHHHHHHHHHHHHHhcCCCccEEEEechHH
Confidence 22344445555653 3777999998764
No 72
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.48 E-value=0.00041 Score=62.71 Aligned_cols=48 Identities=27% Similarity=0.416 Sum_probs=34.6
Q ss_pred cccccchHHHHHHHHHH---hCCC---------CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 148 YEAFESRKSILNDALDA---LSNP---------NVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 148 ~~~~~gr~~~~~~l~~~---l~~~---------~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
..++.|.+..++.+.+. +... -.+-+.|+|++|+|||+||+.+.+...
T Consensus 15 f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~ 74 (476)
T 2ce7_A 15 FKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEAN 74 (476)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred HHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 55678877766655543 3221 234588999999999999999999764
No 73
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.47 E-value=0.00064 Score=59.04 Aligned_cols=86 Identities=19% Similarity=0.221 Sum_probs=57.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCC------CCCHHHHHHHHH
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNIC------EGSESERAMMLC 242 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~------~~~~~~~~~~l~ 242 (266)
.-.++.|+|.+|+||||||..+...... .-..++|++....++.. .+..++.... ..+.++....+.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~--~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~ 132 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQA--AGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 132 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHH--TTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh--CCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 4679999999999999999999876542 22467899888777653 2455654321 224555555555
Q ss_pred HHHhcCCeEEEEEeCCCCC
Q 045699 243 GQLKKGKKILFVLDNIWTS 261 (266)
Q Consensus 243 ~~L~~~kr~LlvlDDvw~~ 261 (266)
...+.++.-+||+|.+...
T Consensus 133 ~l~~~~~~~lIVIDsl~~l 151 (349)
T 2zr9_A 133 MLVRSGALDIIVIDSVAAL 151 (349)
T ss_dssp HHHTTTCCSEEEEECGGGC
T ss_pred HHHhcCCCCEEEEcChHhh
Confidence 4444435669999987654
No 74
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.47 E-value=0.00013 Score=61.93 Aligned_cols=46 Identities=22% Similarity=0.296 Sum_probs=33.8
Q ss_pred cccchHHHHHHHHHHhCC---------CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 150 AFESRKSILNDALDALSN---------PNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 150 ~~~gr~~~~~~l~~~l~~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
.++|.+..++.+...+.. .....+.++|+.|+|||++|+.+.+...
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~ 72 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF 72 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHc
Confidence 356666666666555431 1235899999999999999999999764
No 75
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.47 E-value=0.00065 Score=59.10 Aligned_cols=94 Identities=17% Similarity=0.213 Sum_probs=57.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhcccc---CCCe----------------EEEEEeCCCC------C---------
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLK---VCDE----------------VVFVEVSRTP------D--------- 213 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~f~~----------------~~wv~v~~~~------~--------- 213 (266)
..-.+++|+|++|+|||||.+.+..-.+... .|+. +.+ |.|.+ +
T Consensus 28 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~--vfQ~~~l~p~ltV~eni~~~l 105 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGY--LVQEGVLFPHLTVYRNIAYGL 105 (359)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEE--ECTTCCCCTTSCHHHHHHTTS
T ss_pred cCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEE--EeCCCcCCCCCCHHHHHHHHH
Confidence 3467999999999999999999987533210 0111 122 22221 1
Q ss_pred ---------HHHHHHHHHHHhcCC------CCCCCHHHHH-HHHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699 214 ---------VKRIQGDVADQLSLN------ICEGSESERA-MMLCGQLKKGKKILFVLDNIWTSLDL 264 (266)
Q Consensus 214 ---------~~~~~~~i~~~~~~~------~~~~~~~~~~-~~l~~~L~~~kr~LlvlDDvw~~~~~ 264 (266)
..+-..++++.++.. ....|..+.+ -.|...|-. +.=+|+||+..+.+|.
T Consensus 106 ~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~-~P~lLLLDEPts~LD~ 171 (359)
T 3fvq_A 106 GNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAP-DPELILLDEPFSALDE 171 (359)
T ss_dssp TTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTT-CCSEEEEESTTTTSCH
T ss_pred HHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHc-CCCEEEEeCCcccCCH
Confidence 112234566666552 2345654443 446777777 7889999999988764
No 76
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.46 E-value=9.8e-05 Score=63.67 Aligned_cols=49 Identities=14% Similarity=0.195 Sum_probs=41.5
Q ss_pred CcccccchHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 147 GYEAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 147 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
...+++|++..++.+..++.......+.++|+.|+||||+|+.+.+...
T Consensus 35 ~~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 35 NLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp STTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CHHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3567889999999999998766555699999999999999999988753
No 77
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.45 E-value=0.00096 Score=58.13 Aligned_cols=94 Identities=19% Similarity=0.282 Sum_probs=57.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhcccc---CCC-----------------eEEEEEeCCCC------CHH------
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLK---VCD-----------------EVVFVEVSRTP------DVK------ 215 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~f~-----------------~~~wv~v~~~~------~~~------ 215 (266)
..-.+++|+|++|+|||||.+.+..-.+... .|+ .+.+ +.|.+ +..
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~--v~Q~~~l~~~~TV~env~~~ 129 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGM--IFQHFNLLSSRTVFGNVALP 129 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEE--ECSSCCCCTTSCHHHHHHHH
T ss_pred cCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEE--EeCCCccCCCCCHHHHHHHH
Confidence 4568999999999999999999977533210 010 1222 23322 111
Q ss_pred ------------HHHHHHHHHhcCC------CCCCCHHHHH-HHHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699 216 ------------RIQGDVADQLSLN------ICEGSESERA-MMLCGQLKKGKKILFVLDNIWTSLDL 264 (266)
Q Consensus 216 ------------~~~~~i~~~~~~~------~~~~~~~~~~-~~l~~~L~~~kr~LlvlDDvw~~~~~ 264 (266)
+-..++++.++.. ....|..+.+ -.|...|.. +.=+|+||+..+.+|.
T Consensus 130 ~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~-~P~lLLlDEPTs~LD~ 196 (366)
T 3tui_C 130 LELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALAS-NPKVLLCDQATSALDP 196 (366)
T ss_dssp HHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTT-CCSEEEEESTTTTSCH
T ss_pred HHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhc-CCCEEEEECCCccCCH
Confidence 1233455555552 2345654443 456777877 8889999999988774
No 78
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.45 E-value=0.0006 Score=56.47 Aligned_cols=93 Identities=23% Similarity=0.359 Sum_probs=56.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhcccc-C---CCeEEEEEeCCCC------CH----------------------HH
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLK-V---CDEVVFVEVSRTP------DV----------------------KR 216 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~-~---f~~~~wv~v~~~~------~~----------------------~~ 216 (266)
.-.+++|+|++|+|||||.+.+..-.+... . ...+.|+ .|.+ +. .+
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v--~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ 107 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFV--PQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQ 107 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEE--CSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEE--cCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHH
Confidence 457899999999999999999987643210 0 0112222 2211 00 12
Q ss_pred HHHHHHHHhcCC------CCCCCHHHHH-HHHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699 217 IQGDVADQLSLN------ICEGSESERA-MMLCGQLKKGKKILFVLDNIWTSLDL 264 (266)
Q Consensus 217 ~~~~i~~~~~~~------~~~~~~~~~~-~~l~~~L~~~kr~LlvlDDvw~~~~~ 264 (266)
-..++++.++.. ....|..+.+ -.|...|-. +.=+|+||+..+..|.
T Consensus 108 ~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~-~p~lllLDEPts~LD~ 161 (253)
T 2nq2_C 108 VAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIAS-ECKLILLDEPTSALDL 161 (253)
T ss_dssp HHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHT-TCSEEEESSSSTTSCH
T ss_pred HHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHc-CCCEEEEeCCcccCCH
Confidence 234556666552 2245544433 345666776 7889999999988774
No 79
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.45 E-value=0.00028 Score=58.84 Aligned_cols=28 Identities=25% Similarity=0.275 Sum_probs=24.4
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 167 NPNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 167 ~~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
......+.|+|+.|+|||+||+.+.+..
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 4456789999999999999999999974
No 80
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.43 E-value=0.00012 Score=63.39 Aligned_cols=48 Identities=17% Similarity=0.181 Sum_probs=40.2
Q ss_pred CcccccchHHHHHHHHHHh-CCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 147 GYEAFESRKSILNDALDAL-SNPNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 147 ~~~~~~gr~~~~~~l~~~l-~~~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
...+++|.+..++.+.+++ .......+.|+|+.|+||||+++.+.+..
T Consensus 12 ~~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 12 SLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp SGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHH
T ss_pred CHHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3567889999999999888 65555559999999999999999998853
No 81
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.43 E-value=0.0011 Score=55.22 Aligned_cols=26 Identities=23% Similarity=0.498 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
.-.+++|+|++|+|||||++.+..-.
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 56799999999999999999997643
No 82
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.42 E-value=0.0013 Score=56.42 Aligned_cols=91 Identities=21% Similarity=0.219 Sum_probs=61.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccccC----CCeEEEEEeCCCCCHHHHHHHHHHHhcCCC----------CCCCH
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKV----CDEVVFVEVSRTPDVKRIQGDVADQLSLNI----------CEGSE 234 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~----f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~----------~~~~~ 234 (266)
...++.|+|.+|+||||||..+......... -..++|++....++..++. .++..++... ...+.
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~l~~~~~~~~ 184 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGLDIDNVMNNIYYIRAINT 184 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCCCHHHHhccEEEEeCCCH
Confidence 4579999999999999999999876432110 2468899998888777765 4456665422 11222
Q ss_pred H---HHHHHHHHHHhc-CCeEEEEEeCCCC
Q 045699 235 S---ERAMMLCGQLKK-GKKILFVLDNIWT 260 (266)
Q Consensus 235 ~---~~~~~l~~~L~~-~kr~LlvlDDvw~ 260 (266)
+ ++...+...++. .+--+||+|.+..
T Consensus 185 ~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~ 214 (324)
T 2z43_A 185 DHQIAIVDDLQELVSKDPSIKLIVVDSVTS 214 (324)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEETTTTH
T ss_pred HHHHHHHHHHHHHHHhccCCCEEEEeCcHH
Confidence 2 344455666653 3778999998754
No 83
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.42 E-value=0.00067 Score=60.19 Aligned_cols=48 Identities=27% Similarity=0.378 Sum_probs=36.8
Q ss_pred cccccchHHHHHHHHHHhC----C---------CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 148 YEAFESRKSILNDALDALS----N---------PNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 148 ~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
+.++.|.+..++.|.+.+. . ...+=|.++|++|+|||.||+.+.+...
T Consensus 181 ~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~ 241 (437)
T 4b4t_I 181 YSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTS 241 (437)
T ss_dssp GGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHT
T ss_pred ceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhC
Confidence 5567788877777655431 1 2356799999999999999999999865
No 84
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.42 E-value=0.0013 Score=57.66 Aligned_cols=96 Identities=16% Similarity=0.151 Sum_probs=55.6
Q ss_pred HHHHhC-CCCCcEEEEEcCCCCcHHHHHHHHHHHhcccc-CCCeEEEEEeCCCCCHHHHHHHHHHHhcC-----CCCCCC
Q 045699 161 ALDALS-NPNVDVIGLCGVGGIGKTTLAKIVCDQAKKLK-VCDEVVFVEVSRTPDVKRIQGDVADQLSL-----NICEGS 233 (266)
Q Consensus 161 l~~~l~-~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~-~f~~~~wv~v~~~~~~~~~~~~i~~~~~~-----~~~~~~ 233 (266)
.++.+. -.....++|+|+.|+|||||++.+.+....++ .+. ++++.+.+..... .++.+.+.. ..+...
T Consensus 164 aID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~-~I~~lIGER~~Ev---~~~~~~~~~~vV~atadep~ 239 (422)
T 3ice_A 164 VLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV-LMVLLIDERPEEV---TEMQRLVKGEVVASTFDEPA 239 (422)
T ss_dssp HHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSE-EEEEEESSCHHHH---HHHHTTCSSEEEEECTTSCH
T ss_pred eeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCee-EEEEEecCChHHH---HHHHHHhCeEEEEeCCCCCH
Confidence 344443 34568999999999999999999987654322 233 4467787664322 223333321 112211
Q ss_pred HHH-----HHHHHHHHHhc-CCeEEEEEeCCCC
Q 045699 234 ESE-----RAMMLCGQLKK-GKKILFVLDNIWT 260 (266)
Q Consensus 234 ~~~-----~~~~l~~~L~~-~kr~LlvlDDvw~ 260 (266)
... ....+.+++.+ |+..||++||+..
T Consensus 240 ~~r~~~a~~alt~AEyfrd~G~dVLil~DslTR 272 (422)
T 3ice_A 240 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITR 272 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCEEEEEeCchH
Confidence 111 12223445543 5999999999753
No 85
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.41 E-value=0.00018 Score=57.54 Aligned_cols=40 Identities=25% Similarity=0.477 Sum_probs=31.5
Q ss_pred HHHHHHHHHhCC--CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 156 SILNDALDALSN--PNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 156 ~~~~~l~~~l~~--~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
..++.|.+.+.. ....+++|+|++|+|||||++.+.....
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345566666543 4578999999999999999999988764
No 86
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.40 E-value=0.00057 Score=59.33 Aligned_cols=94 Identities=17% Similarity=0.190 Sum_probs=58.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCC----CeEEEEEeCCCCCHHHHHHHHHHHhcCCC----------CCCC
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVC----DEVVFVEVSRTPDVKRIQGDVADQLSLNI----------CEGS 233 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f----~~~~wv~v~~~~~~~~~~~~i~~~~~~~~----------~~~~ 233 (266)
..-.++.|+|++|+|||||++.+.......... ..++|+.....+....+ ..+++.++... ...+
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~ 207 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFN 207 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCC
Confidence 356899999999999999999998875211111 24588887666544443 33555443310 0111
Q ss_pred ---HHHHHHHHHHHHhc-----CCeEEEEEeCCCCCC
Q 045699 234 ---ESERAMMLCGQLKK-----GKKILFVLDNIWTSL 262 (266)
Q Consensus 234 ---~~~~~~~l~~~L~~-----~kr~LlvlDDvw~~~ 262 (266)
..++...+...+.. .+.=+||||.+....
T Consensus 208 ~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~l 244 (349)
T 1pzn_A 208 SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHF 244 (349)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTH
T ss_pred hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhh
Confidence 22334445555542 277899999998764
No 87
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.39 E-value=0.00092 Score=59.07 Aligned_cols=94 Identities=13% Similarity=0.128 Sum_probs=58.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhcccc----CCCeEEEEEeCCCCCHHHHHHHHHHHhcCCC----------CCCCH
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLK----VCDEVVFVEVSRTPDVKRIQGDVADQLSLNI----------CEGSE 234 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~----~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~----------~~~~~ 234 (266)
.-.++.|+|++|+|||||+..+.-...... .-..++|+.....++...+ +.+++.++... ...+.
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl~~~~vleni~~~~~~~~ 255 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGLDPDDALNNVAYARAYNA 255 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCCChHhHhhcEEEeccCCh
Confidence 467999999999999999997754322111 2346888888777666654 34666665421 11222
Q ss_pred H---HHHHHHHHHHhcCCeEEEEEeCCCCCCC
Q 045699 235 S---ERAMMLCGQLKKGKKILFVLDNIWTSLD 263 (266)
Q Consensus 235 ~---~~~~~l~~~L~~~kr~LlvlDDvw~~~~ 263 (266)
. +....+...+...+.-+||+|.+....+
T Consensus 256 ~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~ 287 (400)
T 3lda_A 256 DHQLRLLDAAAQMMSESRFSLIVVDSVMALYR 287 (400)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC
T ss_pred HHHHHHHHHHHHHHHhcCCceEEecchhhhCc
Confidence 2 2333344444433677999999876543
No 88
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.38 E-value=0.00083 Score=58.38 Aligned_cols=93 Identities=20% Similarity=0.304 Sum_probs=56.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhcccc---CCC------------eEEEEEeCCCC------CHH------------
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLK---VCD------------EVVFVEVSRTP------DVK------------ 215 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~f~------------~~~wv~v~~~~------~~~------------ 215 (266)
.-.+++|+|++|+|||||.+.+..-..... .|+ .+.++ .|.+ +..
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v--~Q~~~l~~~ltv~eni~~~l~~~~~ 117 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLV--FQNYALFQHMTVYDNVSFGLREKRV 117 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEE--CGGGCCCTTSCHHHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEE--ecCcccCCCCCHHHHHHHHHHHcCC
Confidence 467999999999999999999976533110 011 12222 2221 111
Q ss_pred ------HHHHHHHHHhcCC------CCCCCHHHHH-HHHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699 216 ------RIQGDVADQLSLN------ICEGSESERA-MMLCGQLKKGKKILFVLDNIWTSLDL 264 (266)
Q Consensus 216 ------~~~~~i~~~~~~~------~~~~~~~~~~-~~l~~~L~~~kr~LlvlDDvw~~~~~ 264 (266)
+-..++++.++.. ....|..+.+ -.|...|-. +.=+|+||+..+.+|.
T Consensus 118 ~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~-~P~lLLLDEP~s~LD~ 178 (355)
T 1z47_A 118 PKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAP-RPQVLLFDEPFAAIDT 178 (355)
T ss_dssp CHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTT-CCSEEEEESTTCCSSH
T ss_pred CHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHc-CCCEEEEeCCcccCCH
Confidence 1233455655552 2345644433 446677776 7889999999988764
No 89
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.36 E-value=0.0013 Score=56.00 Aligned_cols=86 Identities=10% Similarity=0.099 Sum_probs=57.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCC------CCCHHHHHHHHHHH-
Q 045699 172 VIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNIC------EGSESERAMMLCGQ- 244 (266)
Q Consensus 172 vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~------~~~~~~~~~~l~~~- 244 (266)
++-|.|+.|+|||||+-.+.........-..++|+.....++.. .+++++.+.+ ..+.++....+.+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l 104 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQL 104 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence 78999999999999988887765422113568899988888764 3677777432 22444441223333
Q ss_pred --HhcCCeEEEEEeCCCCCC
Q 045699 245 --LKKGKKILFVLDNIWTSL 262 (266)
Q Consensus 245 --L~~~kr~LlvlDDvw~~~ 262 (266)
++.++.-|||+|-|-...
T Consensus 105 ~~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 105 DAIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp HTCCTTCCEEEEEECSTTCB
T ss_pred HHhhccCceEEEEecccccc
Confidence 344477899999887653
No 90
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.36 E-value=0.0011 Score=57.67 Aligned_cols=94 Identities=23% Similarity=0.275 Sum_probs=57.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhcccc---CCC------------eEEEEEeCCCC------CHH-----------
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLK---VCD------------EVVFVEVSRTP------DVK----------- 215 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~f~------------~~~wv~v~~~~------~~~----------- 215 (266)
..-.+++|+|++|+|||||.+.+..-.+... .|+ .+.++ .|.+ +..
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v--~Q~~~l~~~ltv~eni~~~~~~~~ 104 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMV--FQNYALYPHMTVFENIAFPLRARR 104 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEE--CSSCCCCTTSCHHHHHHGGGSSSC
T ss_pred cCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEE--ecCcccCCCCCHHHHHHHHHHhcC
Confidence 3567999999999999999999977533110 010 12222 2321 111
Q ss_pred -------HHHHHHHHHhcCC------CCCCCHHHHH-HHHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699 216 -------RIQGDVADQLSLN------ICEGSESERA-MMLCGQLKKGKKILFVLDNIWTSLDL 264 (266)
Q Consensus 216 -------~~~~~i~~~~~~~------~~~~~~~~~~-~~l~~~L~~~kr~LlvlDDvw~~~~~ 264 (266)
+-..++++.++.. ....|..+.+ -.|...|-. +.=+|+||+..+.+|.
T Consensus 105 ~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~-~P~lLLLDEP~s~LD~ 166 (359)
T 2yyz_A 105 ISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVK-QPKVLLFDEPLSNLDA 166 (359)
T ss_dssp SHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTT-CCSEEEEESTTTTSCH
T ss_pred CCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHc-CCCEEEEECCcccCCH
Confidence 1234566666552 2345644443 346677776 7889999999988763
No 91
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.35 E-value=0.00032 Score=59.83 Aligned_cols=42 Identities=24% Similarity=0.301 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHhCC---CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 154 RKSILNDALDALSN---PNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 154 r~~~~~~l~~~l~~---~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
+...+..+.+++.. .....+.|+|+.|+|||+||+.+++...
T Consensus 133 ~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 133 RMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp HHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 44445555556542 1257889999999999999999999765
No 92
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.34 E-value=0.00039 Score=58.81 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
....+.++|++|+|||+||+.+.+...
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346788999999999999999999874
No 93
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.32 E-value=0.0014 Score=57.15 Aligned_cols=86 Identities=21% Similarity=0.236 Sum_probs=58.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCC------CCCCHHHHHHHHH
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNI------CEGSESERAMMLC 242 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~l~ 242 (266)
...++.|.|.+|+||||||..+...... .-..++|++....++.. .+..++.+. ...+.+++...+.
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~--~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~ 145 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQK--AGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIME 145 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHH--TTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHH--CCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHH
Confidence 4578999999999999999988776542 22478899998877654 245555532 1234556666666
Q ss_pred HHHhcCCeEEEEEeCCCCC
Q 045699 243 GQLKKGKKILFVLDNIWTS 261 (266)
Q Consensus 243 ~~L~~~kr~LlvlDDvw~~ 261 (266)
..++.++--+||+|.+-..
T Consensus 146 ~l~~~~~~~lVVIDsl~~l 164 (366)
T 1xp8_A 146 LLVRSGAIDVVVVDSVAAL 164 (366)
T ss_dssp HHHTTTCCSEEEEECTTTC
T ss_pred HHHhcCCCCEEEEeChHHh
Confidence 6665435569999988654
No 94
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.32 E-value=0.00088 Score=55.80 Aligned_cols=92 Identities=16% Similarity=0.188 Sum_probs=55.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcccc---CCC-----------eEEEEEeCCCC----CHH--------------HH
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQAKKLK---VCD-----------EVVFVEVSRTP----DVK--------------RI 217 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~f~-----------~~~wv~v~~~~----~~~--------------~~ 217 (266)
-.+++|+|++|+|||||.+.+..-. ... .++ ...| .++|.+ +.. +-
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~-~v~Q~~~l~~tv~enl~~~~~~~~~~~~~ 107 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYST-NLPEAYEIGVTVNDIVYLYEELKGLDRDL 107 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEE-CCGGGSCTTSBHHHHHHHHHHHTCCCHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEE-EeCCCCccCCcHHHHHHHhhhhcchHHHH
Confidence 5689999999999999999997653 211 011 1221 233432 111 12
Q ss_pred HHHHHHHhcCC-------CCCCCHHHH-HHHHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699 218 QGDVADQLSLN-------ICEGSESER-AMMLCGQLKKGKKILFVLDNIWTSLDL 264 (266)
Q Consensus 218 ~~~i~~~~~~~-------~~~~~~~~~-~~~l~~~L~~~kr~LlvlDDvw~~~~~ 264 (266)
..++++.++.. ....|..+. .-.|...|-. +.=+++||+..+.+|.
T Consensus 108 ~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~-~p~lllLDEPts~LD~ 161 (263)
T 2pjz_A 108 FLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALAS-QPEIVGLDEPFENVDA 161 (263)
T ss_dssp HHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHT-CCSEEEEECTTTTCCH
T ss_pred HHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHh-CCCEEEEECCccccCH
Confidence 33456666553 123454443 3446667776 7889999999998774
No 95
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.31 E-value=0.0011 Score=56.60 Aligned_cols=91 Identities=19% Similarity=0.242 Sum_probs=60.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhcccc---------CC-----CeEEEEEeCCCCCHHHHHHHHHHHhcCCC-----
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLK---------VC-----DEVVFVEVSRTPDVKRIQGDVADQLSLNI----- 229 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---------~f-----~~~~wv~v~~~~~~~~~~~~i~~~~~~~~----- 229 (266)
...++.|+|.+|+||||||..+........ .. ..++|++....++..++. .++..++.+.
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~-~~~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIM-QMAEHAGIDGQTVLD 175 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHH-HHHHHHTCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHH-HHHHHcCCCHHHHhc
Confidence 457999999999999999999887632111 11 468899998888877766 3455665421
Q ss_pred -----CCCCHH---HHHHHHHHHHhc-CCeEEEEEeCCCC
Q 045699 230 -----CEGSES---ERAMMLCGQLKK-GKKILFVLDNIWT 260 (266)
Q Consensus 230 -----~~~~~~---~~~~~l~~~L~~-~kr~LlvlDDvw~ 260 (266)
...+.+ ++...+...++. .+--+||+|.+..
T Consensus 176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~ 215 (322)
T 2i1q_A 176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTS 215 (322)
T ss_dssp TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSH
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHH
Confidence 112222 244455666654 3667999998753
No 96
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.31 E-value=0.0011 Score=57.92 Aligned_cols=95 Identities=23% Similarity=0.298 Sum_probs=56.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhcccc---CCCeEE----------------EEEeCCCC------CHH--------
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLK---VCDEVV----------------FVEVSRTP------DVK-------- 215 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~f~~~~----------------wv~v~~~~------~~~-------- 215 (266)
.-.+++|+|++|+|||||.+.+..-..... .|+..- .-.|.|.+ +..
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~ 107 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLK 107 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHH
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHH
Confidence 457899999999999999999986543210 111110 01223322 111
Q ss_pred ----------HHHHHHHHHhcCC------CCCCCHHHHH-HHHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699 216 ----------RIQGDVADQLSLN------ICEGSESERA-MMLCGQLKKGKKILFVLDNIWTSLDL 264 (266)
Q Consensus 216 ----------~~~~~i~~~~~~~------~~~~~~~~~~-~~l~~~L~~~kr~LlvlDDvw~~~~~ 264 (266)
+-..++++.++.. ....|..+.+ -.|...|-. +.=+|+||+..+.+|.
T Consensus 108 ~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~-~P~lLLLDEP~s~LD~ 172 (372)
T 1g29_1 108 LRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVR-KPQVFLMDEPLSNLDA 172 (372)
T ss_dssp HTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHT-CCSEEEEECTTTTSCH
T ss_pred HcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhc-CCCEEEECCCCccCCH
Confidence 1223455555542 2345644443 346677776 7889999999988764
No 97
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.31 E-value=0.0012 Score=57.54 Aligned_cols=94 Identities=23% Similarity=0.277 Sum_probs=56.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhcccc---CCC------------eEEEEEeCCCC------CHH-----------
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLK---VCD------------EVVFVEVSRTP------DVK----------- 215 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~f~------------~~~wv~v~~~~------~~~----------- 215 (266)
..-.+++|+|++|+|||||.+.+..-..... .|+ .+.+ |.|.+ +..
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~--v~Q~~~l~~~ltv~eni~~~~~~~~ 104 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGL--VFQNWALYPHMTVYKNIAFPLELRK 104 (362)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEE--ECTTCCCCTTSCHHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEE--EecCcccCCCCCHHHHHHHHHHhcC
Confidence 3567999999999999999999977543210 010 1222 23322 111
Q ss_pred -------HHHHHHHHHhcCC------CCCCCHHHHH-HHHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699 216 -------RIQGDVADQLSLN------ICEGSESERA-MMLCGQLKKGKKILFVLDNIWTSLDL 264 (266)
Q Consensus 216 -------~~~~~i~~~~~~~------~~~~~~~~~~-~~l~~~L~~~kr~LlvlDDvw~~~~~ 264 (266)
+-..++++.++.. ....|..+.+ -.|...|-. +.=+|+||+..+.+|.
T Consensus 105 ~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~-~P~lLLLDEP~s~LD~ 166 (362)
T 2it1_A 105 APREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVK-EPEVLLLDEPLSNLDA 166 (362)
T ss_dssp CCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTT-CCSEEEEESGGGGSCH
T ss_pred CCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHc-CCCEEEEECccccCCH
Confidence 1123455555552 2245644443 446677777 7889999999887763
No 98
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.30 E-value=0.00029 Score=56.09 Aligned_cols=42 Identities=21% Similarity=0.283 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHhCC---CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 154 RKSILNDALDALSN---PNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 154 r~~~~~~l~~~l~~---~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
|...++.|.+.+.. ....+|+|.|++|+|||||++.+.....
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 44556666666542 4568999999999999999999988653
No 99
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.30 E-value=0.0011 Score=57.49 Aligned_cols=94 Identities=21% Similarity=0.230 Sum_probs=57.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhcccc---CCCe------------EEEEEeCCCC------CHH-----------
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLK---VCDE------------VVFVEVSRTP------DVK----------- 215 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~f~~------------~~wv~v~~~~------~~~----------- 215 (266)
..-.+++|+|++|+|||||.+.+..-.+... .|+. +. .|.|.+ +..
T Consensus 24 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig--~v~Q~~~l~~~ltv~enl~~~~~~~~ 101 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIA--FVYQNYSLFPHMNVKKNLEFGMRMKK 101 (348)
T ss_dssp CTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCE--EECTTCCCCTTSCHHHHHHHHHHHHC
T ss_pred cCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEE--EEecCcccCCCCCHHHHHHHHHHHcC
Confidence 3467999999999999999999987543210 0111 11 233332 111
Q ss_pred ----HHHHHHHHHhcCC------CCCCCHHHHH-HHHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699 216 ----RIQGDVADQLSLN------ICEGSESERA-MMLCGQLKKGKKILFVLDNIWTSLDL 264 (266)
Q Consensus 216 ----~~~~~i~~~~~~~------~~~~~~~~~~-~~l~~~L~~~kr~LlvlDDvw~~~~~ 264 (266)
+-..++++.++.. ....|..+.+ -.|...|-. +.=+|+||+..+.+|.
T Consensus 102 ~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~-~P~lLLLDEP~s~LD~ 160 (348)
T 3d31_A 102 IKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVT-NPKILLLDEPLSALDP 160 (348)
T ss_dssp CCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTS-CCSEEEEESSSTTSCH
T ss_pred CCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHc-CCCEEEEECccccCCH
Confidence 1233456666552 2245644443 456777777 7889999999988763
No 100
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.29 E-value=0.0013 Score=57.12 Aligned_cols=85 Identities=19% Similarity=0.236 Sum_probs=56.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCC------CCCHHHHHHHHH
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNIC------EGSESERAMMLC 242 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~------~~~~~~~~~~l~ 242 (266)
...++.|.|.+|+||||||..+....... -..++|++....++.. .+..++...+ ..+..++...+.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~--g~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~~~~ 134 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICD 134 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHHHHH
Confidence 45799999999999999999988765422 2468899988877654 2455554321 123445555554
Q ss_pred HHHhcCCeEEEEEeCCCC
Q 045699 243 GQLKKGKKILFVLDNIWT 260 (266)
Q Consensus 243 ~~L~~~kr~LlvlDDvw~ 260 (266)
...+.++--+||+|.+-.
T Consensus 135 ~l~~~~~~~lVVIDsl~~ 152 (356)
T 1u94_A 135 ALARSGAVDVIVVDSVAA 152 (356)
T ss_dssp HHHHHTCCSEEEEECGGG
T ss_pred HHHhccCCCEEEEcCHHH
Confidence 444432555999998754
No 101
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.27 E-value=0.0048 Score=55.07 Aligned_cols=28 Identities=25% Similarity=0.306 Sum_probs=24.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhcc
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAKK 196 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 196 (266)
..++|.++|.+|+||||++..+......
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~ 126 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLRE 126 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4679999999999999999999877653
No 102
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=97.22 E-value=0.0021 Score=57.65 Aligned_cols=89 Identities=21% Similarity=0.322 Sum_probs=54.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCC-HHHHHHHHHHHhcC--------CCCCCCHHHH---
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPD-VKRIQGDVADQLSL--------NICEGSESER--- 237 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~-~~~~~~~i~~~~~~--------~~~~~~~~~~--- 237 (266)
-..++|+|..|+|||||++.+..+...+ +-+.++++.+.+..+ ..++..++...-.. ..++......
T Consensus 151 Gq~~~i~G~sGvGKTtL~~~l~~~~~~~-~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~ 229 (473)
T 1sky_E 151 GGKIGLFGGAGVGKTVLIQELIHNIAQE-HGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVA 229 (473)
T ss_dssp TCEEEEECCSSSCHHHHHHHHHHHHHHH-TCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHH
T ss_pred CCEEEEECCCCCCccHHHHHHHhhhhhc-cCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHH
Confidence 4579999999999999999998876532 335567777776643 33444444332100 1112211111
Q ss_pred --HHHHHHHHhc--CCeEEEEEeCCC
Q 045699 238 --AMMLCGQLKK--GKKILFVLDNIW 259 (266)
Q Consensus 238 --~~~l~~~L~~--~kr~LlvlDDvw 259 (266)
...+.+++.+ |++.||++||+.
T Consensus 230 ~~~ltiAEyFrd~~G~~VLl~~D~it 255 (473)
T 1sky_E 230 LTGLTMAEYFRDEQGQDGLLFIDNIF 255 (473)
T ss_dssp HHHHHHHHHHHHHSCCEEEEEEECTH
T ss_pred HHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 2245566653 699999999985
No 103
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.21 E-value=0.0061 Score=52.33 Aligned_cols=28 Identities=32% Similarity=0.329 Sum_probs=24.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
....+++|+|++|+||||+++.+....+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~ 154 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLK 154 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4568999999999999999999987754
No 104
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=97.21 E-value=0.001 Score=57.83 Aligned_cols=94 Identities=27% Similarity=0.350 Sum_probs=57.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhcccc---CCC-----------------eEEEEEeCCCC------CH-------
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLK---VCD-----------------EVVFVEVSRTP------DV------- 214 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~f~-----------------~~~wv~v~~~~------~~------- 214 (266)
..-.+++|+|++|+|||||.+.+..-.+... .|+ .+.++ .|.+ +.
T Consensus 29 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v--~Q~~~l~~~ltv~eni~~~ 106 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMV--FQTWALYPNLTAFENIAFP 106 (353)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEE--ETTSCCCTTSCHHHHHHGG
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEE--eCCCccCCCCCHHHHHHHH
Confidence 3467999999999999999999976532110 011 12222 2221 11
Q ss_pred -----------HHHHHHHHHHhcCC------CCCCCHHHHH-HHHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699 215 -----------KRIQGDVADQLSLN------ICEGSESERA-MMLCGQLKKGKKILFVLDNIWTSLDL 264 (266)
Q Consensus 215 -----------~~~~~~i~~~~~~~------~~~~~~~~~~-~~l~~~L~~~kr~LlvlDDvw~~~~~ 264 (266)
.+-..++++.++.. ....|..+.+ -.|...|-. +.=+|+||+..+.+|.
T Consensus 107 ~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~-~P~lLLLDEP~s~LD~ 173 (353)
T 1oxx_K 107 LTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVK-DPSLLLLDEPFSNLDA 173 (353)
T ss_dssp GTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTT-CCSEEEEESTTTTSCG
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHh-CCCEEEEECCcccCCH
Confidence 12234566666552 2345654443 446777777 7889999999998875
No 105
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.21 E-value=0.0003 Score=67.83 Aligned_cols=48 Identities=23% Similarity=0.299 Sum_probs=35.2
Q ss_pred cccccchHHHHHHHHHHhC-------------CCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 148 YEAFESRKSILNDALDALS-------------NPNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 148 ~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
..+++|.+..++.|.+++. -.....+.|+|++|+||||||+.+.+...
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 4556777766666655542 12346799999999999999999988643
No 106
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.20 E-value=0.0017 Score=56.85 Aligned_cols=94 Identities=15% Similarity=0.202 Sum_probs=55.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhcccc---CCC------------eEEEEEeCCCC--------------------
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLK---VCD------------EVVFVEVSRTP-------------------- 212 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~f~------------~~~wv~v~~~~-------------------- 212 (266)
..-.+++|+|++|+|||||.+.+..-.+... .|+ .+.++ .|.+
T Consensus 35 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v--~Q~~~l~~~ltv~eni~~~~~~~~ 112 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMV--FQSYAVWPHMTVYENIAFPLKIKK 112 (372)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEE--EC------CCCHHHHHHTTCC--C
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEE--ecCcccCCCCCHHHHHHHHHHhcC
Confidence 3567999999999999999999976532110 000 12222 1211
Q ss_pred -CHH---HHHHHHHHHhcCC------CCCCCH-HHHHHHHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699 213 -DVK---RIQGDVADQLSLN------ICEGSE-SERAMMLCGQLKKGKKILFVLDNIWTSLDL 264 (266)
Q Consensus 213 -~~~---~~~~~i~~~~~~~------~~~~~~-~~~~~~l~~~L~~~kr~LlvlDDvw~~~~~ 264 (266)
... +-..++++.++.. ....|. +...-.|...|-. +.=+|+||+..+.+|.
T Consensus 113 ~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~-~P~lLLLDEP~s~LD~ 174 (372)
T 1v43_A 113 FPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVV-EPDVLLMDEPLSNLDA 174 (372)
T ss_dssp CCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTT-CCSEEEEESTTTTSCH
T ss_pred CCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhc-CCCEEEEcCCCccCCH
Confidence 111 2234566666552 123442 2233446667776 7889999999988763
No 107
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.14 E-value=0.0024 Score=54.07 Aligned_cols=27 Identities=30% Similarity=0.290 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
...+++++|++|+||||++..+.....
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 467999999999999999999987765
No 108
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.14 E-value=0.0017 Score=60.53 Aligned_cols=93 Identities=24% Similarity=0.360 Sum_probs=57.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccc-cC--CC-eEEEEEeCCCC------CHHHHH--------------HHHHHH
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKL-KV--CD-EVVFVEVSRTP------DVKRIQ--------------GDVADQ 224 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~-~~--f~-~~~wv~v~~~~------~~~~~~--------------~~i~~~ 224 (266)
.-.+++|+|++|+|||||++.+..-.+.. +. +. .+.++ +|.. +..+.+ .+++..
T Consensus 381 ~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v--~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~ 458 (607)
T 3bk7_A 381 KGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYK--PQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKP 458 (607)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEE--CSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEE--ecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHH
Confidence 45799999999999999999999864322 11 22 22333 3322 222222 233444
Q ss_pred hcCC------CCCCCHHHHH-HHHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699 225 LSLN------ICEGSESERA-MMLCGQLKKGKKILFVLDNIWTSLDL 264 (266)
Q Consensus 225 ~~~~------~~~~~~~~~~-~~l~~~L~~~kr~LlvlDDvw~~~~~ 264 (266)
++.. ....|..+.+ -.|...|.. +.-+|+||+..+.+|.
T Consensus 459 ~~l~~~~~~~~~~LSGGe~QRv~iAraL~~-~p~lLlLDEPt~~LD~ 504 (607)
T 3bk7_A 459 LGIIDLYDRNVEDLSGGELQRVAIAATLLR-DADIYLLDEPSAYLDV 504 (607)
T ss_dssp HTCTTTTTSBGGGCCHHHHHHHHHHHHHTS-CCSEEEEECTTTTCCH
T ss_pred cCCchHhcCChhhCCHHHHHHHHHHHHHHh-CCCEEEEeCCccCCCH
Confidence 4442 2345655544 346677777 8889999999998874
No 109
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.11 E-value=0.00029 Score=55.19 Aligned_cols=25 Identities=28% Similarity=0.468 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
...+++|+|++|+|||||++.+...
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4578999999999999999999775
No 110
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.10 E-value=0.00072 Score=62.14 Aligned_cols=95 Identities=27% Similarity=0.417 Sum_probs=55.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhcccc---CCCeEEEEEeCCCC------CHHHHH---------------HHHHHH
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLK---VCDEVVFVEVSRTP------DVKRIQ---------------GDVADQ 224 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~f~~~~wv~v~~~~------~~~~~~---------------~~i~~~ 224 (266)
.-.+++|+|++|+|||||++.++.-.+... .++......+++.. +..+.+ .++++.
T Consensus 293 ~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~ 372 (538)
T 3ozx_A 293 EGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKR 372 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHH
Confidence 356899999999999999999988643221 11111111223321 222221 222222
Q ss_pred hcC------CCCCCCHHHHH-HHHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699 225 LSL------NICEGSESERA-MMLCGQLKKGKKILFVLDNIWTSLDL 264 (266)
Q Consensus 225 ~~~------~~~~~~~~~~~-~~l~~~L~~~kr~LlvlDDvw~~~~~ 264 (266)
++. .....|..+.+ -.|...|.. +.=+|+||+..+.+|.
T Consensus 373 ~~l~~~~~~~~~~LSGGq~QRv~iAraL~~-~p~lLlLDEPT~gLD~ 418 (538)
T 3ozx_A 373 LNLHRLLESNVNDLSGGELQKLYIAATLAK-EADLYVLDQPSSYLDV 418 (538)
T ss_dssp TTGGGCTTSBGGGCCHHHHHHHHHHHHHHS-CCSEEEEESTTTTCCH
T ss_pred cCCHHHhcCChhhCCHHHHHHHHHHHHHHc-CCCEEEEeCCccCCCH
Confidence 222 12345654443 446777777 8889999999998774
No 111
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.10 E-value=0.00034 Score=55.40 Aligned_cols=25 Identities=20% Similarity=0.389 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
..+++|+|++|+|||||++.+....
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998763
No 112
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.10 E-value=0.00034 Score=60.28 Aligned_cols=48 Identities=29% Similarity=0.435 Sum_probs=36.0
Q ss_pred cccccchHHHHHHHHHHhC-----CCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 148 YEAFESRKSILNDALDALS-----NPNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 148 ~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
...++|.+..++.+...+. ......+.++|++|+||||||+.+.+...
T Consensus 24 l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~ 76 (334)
T 1in4_A 24 LDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQ 76 (334)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred HHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 4456777766666655443 23457899999999999999999999763
No 113
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.07 E-value=0.00033 Score=54.79 Aligned_cols=24 Identities=38% Similarity=0.527 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 172 VIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 172 vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
.++|+|++|+|||||++.+.....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999988764
No 114
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.06 E-value=0.00035 Score=54.57 Aligned_cols=25 Identities=16% Similarity=0.379 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
..+++|+|++|+|||||++.+....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998764
No 115
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.05 E-value=0.00031 Score=55.14 Aligned_cols=25 Identities=32% Similarity=0.401 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 171 DVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 171 ~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
++++|+|++|+|||||++.+.....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5789999999999999999987643
No 116
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=97.05 E-value=0.0041 Score=55.78 Aligned_cols=99 Identities=21% Similarity=0.339 Sum_probs=64.9
Q ss_pred HHHHhCC-CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCC-HHHHHHHHHHHhcCC----------
Q 045699 161 ALDALSN-PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPD-VKRIQGDVADQLSLN---------- 228 (266)
Q Consensus 161 l~~~l~~-~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~-~~~~~~~i~~~~~~~---------- 228 (266)
.++.|.. .+-..++|+|..|+|||+|++.+.+.... .+-+.++++-+.+... ..++.+++...-...
T Consensus 143 ~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~~-~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rtvv 221 (482)
T 2ck3_D 143 VVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAK-AHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVAL 221 (482)
T ss_dssp HHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHTTT-TCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEEE
T ss_pred EEecccccccCCeeeeecCCCCChHHHHHHHHHhhHh-hCCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceEEE
Confidence 3444432 45689999999999999999999887531 3457788888887653 456666776542221
Q ss_pred ---CCCCC-HH-----HHHHHHHHHHhc--CCeEEEEEeCCCC
Q 045699 229 ---ICEGS-ES-----ERAMMLCGQLKK--GKKILFVLDNIWT 260 (266)
Q Consensus 229 ---~~~~~-~~-----~~~~~l~~~L~~--~kr~LlvlDDvw~ 260 (266)
..+.+ .. .....+.+++++ |+..||++||+..
T Consensus 222 V~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~DsitR 264 (482)
T 2ck3_D 222 VYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFR 264 (482)
T ss_dssp EEECTTSCHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTHH
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 11112 11 223445667765 6999999999853
No 117
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.04 E-value=0.0076 Score=50.98 Aligned_cols=26 Identities=46% Similarity=0.372 Sum_probs=23.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
..+++++|.+|+||||++..+.....
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~ 123 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYK 123 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999999987754
No 118
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.04 E-value=0.00029 Score=54.60 Aligned_cols=23 Identities=35% Similarity=0.508 Sum_probs=20.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHH
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVC 191 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~ 191 (266)
...+++|+|++|+|||||++.++
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHc
Confidence 45789999999999999999644
No 119
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.04 E-value=0.0014 Score=60.18 Aligned_cols=93 Identities=25% Similarity=0.378 Sum_probs=56.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccc-cC--CC-eEEEEEeCCCC------CHHHHHHH--------------HHHH
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKL-KV--CD-EVVFVEVSRTP------DVKRIQGD--------------VADQ 224 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~-~~--f~-~~~wv~v~~~~------~~~~~~~~--------------i~~~ 224 (266)
.-.+++|+|++|+|||||++.++.-.+.. +. +. .+.+ ++|.. +..+++.. ++..
T Consensus 311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~--v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~ 388 (538)
T 1yqt_A 311 KGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAY--KPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKP 388 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEE--ECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEE--EecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHH
Confidence 45799999999999999999999865422 11 22 1233 33322 23333221 1112
Q ss_pred hcC------CCCCCCHHHHH-HHHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699 225 LSL------NICEGSESERA-MMLCGQLKKGKKILFVLDNIWTSLDL 264 (266)
Q Consensus 225 ~~~------~~~~~~~~~~~-~~l~~~L~~~kr~LlvlDDvw~~~~~ 264 (266)
++. .....|..+.+ -.|...|.. +.-+|+||+..+.+|.
T Consensus 389 ~~l~~~~~~~~~~LSGGe~qrv~lAraL~~-~p~lLlLDEPt~~LD~ 434 (538)
T 1yqt_A 389 LGIIDLYDREVNELSGGELQRVAIAATLLR-DADIYLLDEPSAYLDV 434 (538)
T ss_dssp TTCGGGTTSBGGGCCHHHHHHHHHHHHHTS-CCSEEEEECTTTTCCH
T ss_pred cCChhhhcCChhhCCHHHHHHHHHHHHHHh-CCCEEEEeCCcccCCH
Confidence 222 12245654443 456677777 8889999999998874
No 120
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.04 E-value=0.0079 Score=53.46 Aligned_cols=27 Identities=33% Similarity=0.303 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
...++.++|++|+||||++..+.....
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~ 123 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYK 123 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 457999999999999999999988765
No 121
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.02 E-value=0.00047 Score=54.69 Aligned_cols=27 Identities=37% Similarity=0.485 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
....+|+|+|+.|+|||||++.+....
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 456899999999999999999998765
No 122
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.01 E-value=0.0012 Score=55.08 Aligned_cols=23 Identities=43% Similarity=0.677 Sum_probs=21.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhc
Q 045699 173 IGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 173 i~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
+.|+|++|+|||||++.+.+...
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCcChHHHHHHHHHHHcC
Confidence 89999999999999999998764
No 123
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.01 E-value=0.00044 Score=55.18 Aligned_cols=27 Identities=37% Similarity=0.425 Sum_probs=23.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
...+++|+|+.|+|||||++.+.....
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 457999999999999999999988644
No 124
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.99 E-value=0.00048 Score=55.01 Aligned_cols=27 Identities=22% Similarity=0.383 Sum_probs=23.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
..-.+++|+|++|+|||||++.+..-.
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 346799999999999999999998764
No 125
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.98 E-value=0.0004 Score=53.48 Aligned_cols=25 Identities=32% Similarity=0.412 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 171 DVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 171 ~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
.+|+|+|+.|+|||||++.+.....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999988643
No 126
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.98 E-value=0.003 Score=58.04 Aligned_cols=95 Identities=21% Similarity=0.307 Sum_probs=56.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccc-cC-------------CC--------------eEEEEEeCCCC--------
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKL-KV-------------CD--------------EVVFVEVSRTP-------- 212 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~-~~-------------f~--------------~~~wv~v~~~~-------- 212 (266)
.-.+++|+|++|+|||||.+.+..-.+.. +. |. ........+..
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFLK 103 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGGTTCC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhhhhcc
Confidence 46799999999999999999997643211 00 00 00011111111
Q ss_pred -CHHH---------HHHHHHHHhcCC------CCCCCHHHHH-HHHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699 213 -DVKR---------IQGDVADQLSLN------ICEGSESERA-MMLCGQLKKGKKILFVLDNIWTSLDL 264 (266)
Q Consensus 213 -~~~~---------~~~~i~~~~~~~------~~~~~~~~~~-~~l~~~L~~~kr~LlvlDDvw~~~~~ 264 (266)
+..+ ...++++.++.. ....|..+.+ -.|...|.. +.=+|+||+..+.+|.
T Consensus 104 ~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~-~p~illlDEPts~LD~ 171 (538)
T 3ozx_A 104 GTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLR-EADVYIFDQPSSYLDV 171 (538)
T ss_dssp SBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHS-CCSEEEEESTTTTCCH
T ss_pred CcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHc-CCCEEEEECCcccCCH
Confidence 1111 234566666652 2345654443 456777777 8889999999998774
No 127
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.97 E-value=0.00041 Score=53.13 Aligned_cols=22 Identities=36% Similarity=0.649 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 045699 171 DVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 171 ~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
.+|.|.|+.|+||||+|+.+ ..
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~ 23 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KE 23 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HH
T ss_pred cEEEEECCCCCCHHHHHHHH-HH
Confidence 47999999999999999999 44
No 128
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.97 E-value=0.0052 Score=52.23 Aligned_cols=86 Identities=17% Similarity=0.140 Sum_probs=46.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHH--HHHHHHHHHhcCCC----CCCCHHHH-HHHH
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVK--RIQGDVADQLSLNI----CEGSESER-AMML 241 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~--~~~~~i~~~~~~~~----~~~~~~~~-~~~l 241 (266)
...++.|+|++|+||||++..+........ ..+.++... .+... +-+...++..+.+. ...+...+ ...+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g--~kV~lv~~D-~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al 179 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEG--KSVVLAAAD-TFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAV 179 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTT--CCEEEEEEC-TTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcC--CEEEEEccc-cccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 457999999999999999999988765321 233344332 22221 22233444544421 11222222 2234
Q ss_pred HHHHhcCCeEEEEEeCC
Q 045699 242 CGQLKKGKKILFVLDNI 258 (266)
Q Consensus 242 ~~~L~~~kr~LlvlDDv 258 (266)
...+.. +.-+|++|..
T Consensus 180 ~~a~~~-~~dvvIiDtp 195 (306)
T 1vma_A 180 AHALAR-NKDVVIIDTA 195 (306)
T ss_dssp HHHHHT-TCSEEEEEEC
T ss_pred HHHHhc-CCCEEEEECC
Confidence 444554 4447777855
No 129
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.97 E-value=0.00056 Score=52.44 Aligned_cols=27 Identities=30% Similarity=0.266 Sum_probs=24.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
..-.+++|+|+.|+|||||++.+..-.
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 456799999999999999999998875
No 130
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.95 E-value=0.00061 Score=54.03 Aligned_cols=29 Identities=31% Similarity=0.321 Sum_probs=25.4
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 167 NPNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 167 ~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
.....+|.|+|++|+|||||++.+.....
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34578999999999999999999988764
No 131
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=96.95 E-value=0.0039 Score=56.13 Aligned_cols=92 Identities=21% Similarity=0.282 Sum_probs=63.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCC-HHHHHHHHHHHhcCC--------------CCCC
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPD-VKRIQGDVADQLSLN--------------ICEG 232 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~-~~~~~~~i~~~~~~~--------------~~~~ 232 (266)
.+-..++|+|..|+|||+|++.+.++... .+-+.++++-+.+... ..++.+++...-... ..+.
T Consensus 163 gkGqr~gIfgg~GvGKT~L~~~l~~~~a~-~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtvvV~~t~d~ 241 (498)
T 1fx0_B 163 RRGGKIGLFGGAGVGKTVLIMELINNIAK-AHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNE 241 (498)
T ss_dssp CTTCCEEEEECSSSSHHHHHHHHHHHTTT-TCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEEEEEECTTS
T ss_pred ccCCeEEeecCCCCCchHHHHHHHHHHHh-hCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceEEEEeCCCC
Confidence 45688999999999999999999887532 3557889998887654 456666666532111 1111
Q ss_pred C------HHHHHHHHHHHHhc--CCeEEEEEeCCCC
Q 045699 233 S------ESERAMMLCGQLKK--GKKILFVLDNIWT 260 (266)
Q Consensus 233 ~------~~~~~~~l~~~L~~--~kr~LlvlDDvw~ 260 (266)
+ .......+.+++++ |+..||++||+..
T Consensus 242 p~~~R~~~~~~altiAEyfrd~~G~dVLl~~DsitR 277 (498)
T 1fx0_B 242 PPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFR 277 (498)
T ss_dssp CHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 1 11234456778876 7999999999853
No 132
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.94 E-value=0.0019 Score=61.92 Aligned_cols=27 Identities=33% Similarity=0.389 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
..+-|.++|+.|+|||+||+.+.+...
T Consensus 237 ~p~GILL~GPPGTGKT~LAraiA~elg 263 (806)
T 3cf2_A 237 PPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHTTTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 346789999999999999999998764
No 133
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.94 E-value=0.0035 Score=58.34 Aligned_cols=91 Identities=23% Similarity=0.284 Sum_probs=56.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhccccC--C-C-eEEEEEeCCCC------CH--------------HHHHHHHHHHhc
Q 045699 171 DVIGLCGVGGIGKTTLAKIVCDQAKKLKV--C-D-EVVFVEVSRTP------DV--------------KRIQGDVADQLS 226 (266)
Q Consensus 171 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~--f-~-~~~wv~v~~~~------~~--------------~~~~~~i~~~~~ 226 (266)
.+++|+|++|+|||||++.+..-.+...- . . ...++ +|.. +. .....++++.++
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~--~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~ 456 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMK--PQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLR 456 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEE--CSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHT
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEe--cccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcC
Confidence 67999999999999999999886432211 0 0 12222 2211 11 122334555555
Q ss_pred C------CCCCCCHHHHH-HHHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699 227 L------NICEGSESERA-MMLCGQLKKGKKILFVLDNIWTSLDL 264 (266)
Q Consensus 227 ~------~~~~~~~~~~~-~~l~~~L~~~kr~LlvlDDvw~~~~~ 264 (266)
. .....|..+.+ -.|...|.. +.=+|+||+..+.+|.
T Consensus 457 l~~~~~~~~~~LSGGqkQRv~iAraL~~-~p~lLlLDEPT~gLD~ 500 (608)
T 3j16_B 457 IDDIIDQEVQHLSGGELQRVAIVLALGI-PADIYLIDEPSAYLDS 500 (608)
T ss_dssp STTTSSSBSSSCCHHHHHHHHHHHHTTS-CCSEEEECCTTTTCCH
T ss_pred ChhhhcCChhhCCHHHHHHHHHHHHHHh-CCCEEEEECCCCCCCH
Confidence 4 22356655544 456777887 8889999999988774
No 134
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.94 E-value=0.0054 Score=49.68 Aligned_cols=47 Identities=19% Similarity=0.278 Sum_probs=31.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHH
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQG 219 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~ 219 (266)
.-.++.|.|++|+|||||+..+...... .-..++|++.... ..++..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~--~~~~v~~~~~e~~--~~~~~~ 68 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLK--MGEPGIYVALEEH--PVQVRQ 68 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHH--TTCCEEEEESSSC--HHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh--cCCeEEEEEccCC--HHHHHH
Confidence 4579999999999999998877655431 2245677765543 344443
No 135
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.94 E-value=0.00045 Score=54.88 Aligned_cols=25 Identities=32% Similarity=0.421 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
.++++|+|++|+|||||++.+....
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998753
No 136
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.93 E-value=0.0052 Score=57.22 Aligned_cols=27 Identities=41% Similarity=0.649 Sum_probs=23.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
..-.+++|+|++|+|||||.+.+..-.
T Consensus 101 ~~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 101 RPGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 356799999999999999999997653
No 137
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.93 E-value=0.00065 Score=53.85 Aligned_cols=26 Identities=38% Similarity=0.370 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
...+|.|+|+.|+||||+++.+....
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 45799999999999999999998765
No 138
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.92 E-value=0.00054 Score=53.70 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 045699 171 DVIGLCGVGGIGKTTLAKIVCD 192 (266)
Q Consensus 171 ~vi~I~G~~G~GKTtLa~~v~~ 192 (266)
.+++|+|++|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999975
No 139
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.91 E-value=0.0008 Score=56.72 Aligned_cols=47 Identities=23% Similarity=0.253 Sum_probs=36.4
Q ss_pred ccccchHHHHHHHHHHhCC--------------CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 149 EAFESRKSILNDALDALSN--------------PNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 149 ~~~~gr~~~~~~l~~~l~~--------------~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
..++|.+..++.+...+.. .....+.++|+.|+|||++|+.+.+...
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3478888888777765532 2356788999999999999999998763
No 140
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.90 E-value=0.0036 Score=57.59 Aligned_cols=46 Identities=24% Similarity=0.370 Sum_probs=33.7
Q ss_pred cccchHHHHHHHHHHh-----C-CCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 150 AFESRKSILNDALDAL-----S-NPNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 150 ~~~gr~~~~~~l~~~l-----~-~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
.+.|.+..++.+.+.+ . .....++.++|++|+||||||+.+.....
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~ 133 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLG 133 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHT
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3566666655554332 1 23467899999999999999999999764
No 141
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.90 E-value=0.00062 Score=52.16 Aligned_cols=24 Identities=25% Similarity=0.151 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 171 DVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 171 ~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
.+|.|.|+.|+||||+++.+....
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998764
No 142
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.88 E-value=0.00072 Score=53.54 Aligned_cols=26 Identities=31% Similarity=0.442 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
...+++|+|+.|+||||+++.+....
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 35689999999999999999998754
No 143
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.86 E-value=0.00075 Score=53.96 Aligned_cols=26 Identities=31% Similarity=0.406 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
...+++|+|++|+|||||++.+....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 46789999999999999999998764
No 144
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.86 E-value=0.00063 Score=54.92 Aligned_cols=26 Identities=35% Similarity=0.621 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
...+++|+|++|+|||||++.+....
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 46789999999999999999998754
No 145
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.85 E-value=0.014 Score=52.12 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
...+|.++|.+|+||||++..+.....
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 468999999999999999998887655
No 146
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.85 E-value=0.00072 Score=57.75 Aligned_cols=28 Identities=29% Similarity=0.449 Sum_probs=24.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
....+++|+|++|+|||||++.+..-..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 4568999999999999999999988765
No 147
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.84 E-value=0.00093 Score=51.57 Aligned_cols=25 Identities=36% Similarity=0.469 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
..+++|+|+.|+||||+++.+....
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 5789999999999999999998764
No 148
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.83 E-value=0.00076 Score=52.13 Aligned_cols=24 Identities=21% Similarity=0.255 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 171 DVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 171 ~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
.+|.|.|+.|+||||+++.+....
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 578999999999999999998864
No 149
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.83 E-value=0.0007 Score=55.60 Aligned_cols=93 Identities=25% Similarity=0.331 Sum_probs=55.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhcccc---CCC------------eEEEEEeCCCC------CH------------
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLK---VCD------------EVVFVEVSRTP------DV------------ 214 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~f~------------~~~wv~v~~~~------~~------------ 214 (266)
.. .+++|+|++|+|||||.+.+..-.+... .|+ .+.| +.|.+ +.
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~--v~q~~~l~~~ltv~enl~~~~~~~~ 99 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGF--VPQDYALFPHLSVYRNIAYGLRNVE 99 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBC--CCSSCCCCTTSCHHHHHHTTCTTSC
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEE--EcCCCccCCCCcHHHHHHHHHHHcC
Confidence 46 8999999999999999999977532110 000 0111 22211 11
Q ss_pred ----HHHHHHHHHHhcCC------CCCCCHHHHH-HHHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699 215 ----KRIQGDVADQLSLN------ICEGSESERA-MMLCGQLKKGKKILFVLDNIWTSLDL 264 (266)
Q Consensus 215 ----~~~~~~i~~~~~~~------~~~~~~~~~~-~~l~~~L~~~kr~LlvlDDvw~~~~~ 264 (266)
.+-..++++.++.. ....|..+.+ -.+...|-. +.=+++||+..+..|.
T Consensus 100 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~-~p~lllLDEPts~LD~ 159 (240)
T 2onk_A 100 RVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVI-QPRLLLLDEPLSAVDL 159 (240)
T ss_dssp HHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTT-CCSSBEEESTTSSCCH
T ss_pred CchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHc-CCCEEEEeCCcccCCH
Confidence 11233455555542 1235544433 346667776 7889999999988764
No 150
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.82 E-value=0.0016 Score=54.93 Aligned_cols=28 Identities=18% Similarity=0.118 Sum_probs=24.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
....+|+|+|+.|+|||||++.+.....
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4568999999999999999999987754
No 151
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.82 E-value=0.0041 Score=56.50 Aligned_cols=48 Identities=27% Similarity=0.428 Sum_probs=33.9
Q ss_pred cccccchHHHHHHHHHH---hCCC---------CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 148 YEAFESRKSILNDALDA---LSNP---------NVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 148 ~~~~~gr~~~~~~l~~~---l~~~---------~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
..++.|.+..+..+.+. +... -.+-+.|+|++|+||||||+.+.+...
T Consensus 30 f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~ 89 (499)
T 2dhr_A 30 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 89 (499)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred HHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 55678877666555443 3221 123489999999999999999998754
No 152
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.81 E-value=0.00074 Score=55.24 Aligned_cols=27 Identities=22% Similarity=0.389 Sum_probs=23.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
..-.+++|+|++|+|||||++.+..-.
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 356799999999999999999997653
No 153
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.81 E-value=0.00084 Score=55.07 Aligned_cols=27 Identities=22% Similarity=0.299 Sum_probs=23.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
....+|+|.|++|+|||||++.+....
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456799999999999999999998764
No 154
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.81 E-value=0.0014 Score=54.29 Aligned_cols=47 Identities=17% Similarity=0.230 Sum_probs=31.9
Q ss_pred ccccchHHHHHHHHHHhC--CCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 149 EAFESRKSILNDALDALS--NPNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 149 ~~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
.+++|....+..+.+.+. ......+.|+|..|+|||+||+.+++...
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 456777666666655442 12346788999999999999999998653
No 155
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.79 E-value=0.00077 Score=53.42 Aligned_cols=25 Identities=24% Similarity=0.484 Sum_probs=22.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
..+|.|.|+.|+||||+|+.+....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998875
No 156
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.77 E-value=0.00071 Score=54.92 Aligned_cols=26 Identities=27% Similarity=0.383 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
.-.+++|+|++|+|||||.+.+..-.
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45799999999999999999997653
No 157
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.77 E-value=0.017 Score=49.22 Aligned_cols=52 Identities=13% Similarity=0.068 Sum_probs=37.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHH
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVAD 223 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~ 223 (266)
....++.|.|.+|+||||||..+......++ ..++|++.. .+..++...++.
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~ 117 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIV 117 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHH
Confidence 3467899999999999999999987654332 577787766 345555555543
No 158
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.77 E-value=0.00092 Score=54.08 Aligned_cols=27 Identities=15% Similarity=0.218 Sum_probs=24.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
...+++|+|++|+|||||.+.+.....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 467999999999999999999988753
No 159
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=96.77 E-value=0.0032 Score=55.09 Aligned_cols=99 Identities=13% Similarity=0.151 Sum_probs=55.2
Q ss_pred HHHHHhCC-CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCC-eEEEEEeCCCCCHH-HHHHHHHHHhcCCCCCCC-HH
Q 045699 160 DALDALSN-PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCD-EVVFVEVSRTPDVK-RIQGDVADQLSLNICEGS-ES 235 (266)
Q Consensus 160 ~l~~~l~~-~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~-~~~wv~v~~~~~~~-~~~~~i~~~~~~~~~~~~-~~ 235 (266)
+.++.+.. ..-..++|+|..|+|||+|++.+.+....+ +-+ .++++.+.+..... ++.+++...+-....+.+ ..
T Consensus 164 raID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~-~~dv~~V~~lIGER~~EV~d~~~~~~G~VV~atadep~~~ 242 (427)
T 3l0o_A 164 RLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAEN-HPDTIRIILLIDERPEEVTDIRESTNAIVIAAPFDMPPDK 242 (427)
T ss_dssp HHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHH-CTTSEEEEEECSCCHHHHSSSSSSCCSEEEECCTTSCHHH
T ss_pred hhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhc-CCCeEEEEEEeccCcchHHHHHHHhCCeEEEECCCCCHHH
Confidence 34555543 456899999999999999999998875432 223 23567777653211 111111100000111112 11
Q ss_pred -----HHHHHHHHHHhc-CCeEEEEEeCCC
Q 045699 236 -----ERAMMLCGQLKK-GKKILFVLDNIW 259 (266)
Q Consensus 236 -----~~~~~l~~~L~~-~kr~LlvlDDvw 259 (266)
.....+.+++.+ |+..||++||+.
T Consensus 243 r~~~a~~altiAEyfrd~G~dVLil~DslT 272 (427)
T 3l0o_A 243 QVKVAELTLEMAKRLVEFNYDVVILLDSLT 272 (427)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEecccch
Confidence 122234555543 599999999975
No 160
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.76 E-value=0.0018 Score=56.09 Aligned_cols=43 Identities=26% Similarity=0.417 Sum_probs=31.3
Q ss_pred chHHHHHHHHHHh----CCCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 153 SRKSILNDALDAL----SNPNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 153 gr~~~~~~l~~~l----~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
+.+..++.+++.+ .......|.|+|+.|+||||+++.+.....
T Consensus 3 ~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 3 DTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp CHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 3445555555554 244566799999999999999999987654
No 161
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.76 E-value=0.00085 Score=53.18 Aligned_cols=22 Identities=41% Similarity=0.616 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 045699 171 DVIGLCGVGGIGKTTLAKIVCD 192 (266)
Q Consensus 171 ~vi~I~G~~G~GKTtLa~~v~~ 192 (266)
.+|+|.|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999987
No 162
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.75 E-value=0.00088 Score=54.93 Aligned_cols=26 Identities=19% Similarity=0.224 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
...+|+|+|++|+|||||++.+....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35799999999999999999998554
No 163
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.74 E-value=0.015 Score=51.79 Aligned_cols=27 Identities=41% Similarity=0.282 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
...+|.++|++|+||||++..+.....
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~ 122 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYK 122 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 368999999999999999999987665
No 164
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.74 E-value=0.0062 Score=59.48 Aligned_cols=93 Identities=23% Similarity=0.271 Sum_probs=57.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCC---eEEEEEeCCCC-------CH-----------HHHHHHHHHHhcC
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCD---EVVFVEVSRTP-------DV-----------KRIQGDVADQLSL 227 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~---~~~wv~v~~~~-------~~-----------~~~~~~i~~~~~~ 227 (266)
...+++|+|++|+|||||++.+..- .+. .++ ..-.+.+.+.. +. ..-..+++..++.
T Consensus 460 ~Ge~v~LiGpNGsGKSTLLk~LagG-~i~-g~~~~~~~~~~~v~q~~~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~lgL 537 (986)
T 2iw3_A 460 RARRYGICGPNGCGKSTLMRAIANG-QVD-GFPTQEECRTVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGF 537 (986)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHT-CST-TCCCTTTSCEEETTCCCCCCCTTSBHHHHHHTTCSSCHHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC-CcC-CCccccceeEEEEcccccccccCCcHHHHHHHhhcCHHHHHHHHHHHcCC
Confidence 4578999999999999999999842 111 111 00112333321 11 1223456666665
Q ss_pred C-------CCCCCHHHHH-HHHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699 228 N-------ICEGSESERA-MMLCGQLKKGKKILFVLDNIWTSLDL 264 (266)
Q Consensus 228 ~-------~~~~~~~~~~-~~l~~~L~~~kr~LlvlDDvw~~~~~ 264 (266)
. ....|..+.+ -.|...|-. +.=+|+||+..+.+|.
T Consensus 538 ~~~~~~~~~~~LSGGqkQRvaLArAL~~-~P~lLLLDEPTs~LD~ 581 (986)
T 2iw3_A 538 TDEMIAMPISALSGGWKMKLALARAVLR-NADILLLDEPTNHLDT 581 (986)
T ss_dssp CHHHHHSBGGGCCHHHHHHHHHHHHHHT-TCSEEEEESTTTTCCH
T ss_pred ChhhhcCCcccCCHHHHHHHHHHHHHhc-CCCEEEEECCccCCCH
Confidence 2 2355654443 446667776 7889999999998874
No 165
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.72 E-value=0.00092 Score=52.81 Aligned_cols=25 Identities=36% Similarity=0.426 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 171 DVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 171 ~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
.+++|+|++|+|||||++.+....+
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 4689999999999999999988653
No 166
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.72 E-value=0.00098 Score=51.43 Aligned_cols=22 Identities=32% Similarity=0.377 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 045699 171 DVIGLCGVGGIGKTTLAKIVCD 192 (266)
Q Consensus 171 ~vi~I~G~~G~GKTtLa~~v~~ 192 (266)
.+|.|.|+.|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999987
No 167
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.71 E-value=0.00095 Score=53.74 Aligned_cols=25 Identities=36% Similarity=0.505 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
..+|+|+|+.|+||||+++.+....
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999997754
No 168
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.71 E-value=0.0011 Score=51.54 Aligned_cols=26 Identities=31% Similarity=0.418 Sum_probs=22.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
...|.|+|+.|+||||+++.+.....
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46789999999999999999987653
No 169
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.70 E-value=0.0062 Score=63.50 Aligned_cols=85 Identities=20% Similarity=0.264 Sum_probs=60.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCC------CCCHHHHHHHH
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNIC------EGSESERAMML 241 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~------~~~~~~~~~~l 241 (266)
...+.+-|+|+.|+|||+||..+...... .=..++|+.+...+++.. +..++.+.+ ..+.++....+
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~ea~~--~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~ 1497 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIAAAQR--EGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1497 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHT--TTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHH
Confidence 35789999999999999999999887652 234678888888776665 556664321 12334555566
Q ss_pred HHHHhcCCeEEEEEeCCC
Q 045699 242 CGQLKKGKKILFVLDNIW 259 (266)
Q Consensus 242 ~~~L~~~kr~LlvlDDvw 259 (266)
....++.+--+||+|++.
T Consensus 1498 ~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1498 DALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHHTCCSEEEESCGG
T ss_pred HHHHhcCCCCEEEEcChh
Confidence 656555477899999985
No 170
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.70 E-value=0.00098 Score=55.46 Aligned_cols=27 Identities=30% Similarity=0.395 Sum_probs=23.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
..-.+++|+|++|+|||||.+.+..-.
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 356799999999999999999997653
No 171
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.70 E-value=0.0045 Score=49.47 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 172 VIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 172 vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
+|.|.|++|+||+|.|+.+.....
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 678999999999999999998754
No 172
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=96.68 E-value=0.0076 Score=51.19 Aligned_cols=70 Identities=11% Similarity=0.014 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhc-cc-cCCCeEEEEEeCC-CCCHHHHHHHHHHHhc
Q 045699 155 KSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAK-KL-KVCDEVVFVEVSR-TPDVKRIQGDVADQLS 226 (266)
Q Consensus 155 ~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~-~~-~~f~~~~wv~v~~-~~~~~~~~~~i~~~~~ 226 (266)
+..++.|.+.+..++.....++|+.|+||||+|+.+.+... .. .+.+. .++..+. ...... .+++.+.+.
T Consensus 3 ~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~-~~l~~~~~~~~id~-ir~li~~~~ 75 (305)
T 2gno_A 3 KDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDV-LEIDPEGENIGIDD-IRTIKDFLN 75 (305)
T ss_dssp -CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTE-EEECCSSSCBCHHH-HHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCE-EEEcCCcCCCCHHH-HHHHHHHHh
Confidence 34456666666655577899999999999999999987521 11 23333 4454443 334333 455666553
No 173
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.67 E-value=0.0011 Score=52.64 Aligned_cols=26 Identities=35% Similarity=0.589 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
...+|.|+|+.|+|||||++.+....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 35789999999999999999998765
No 174
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.67 E-value=0.0013 Score=56.02 Aligned_cols=27 Identities=30% Similarity=0.353 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
...+++|+|++|+|||||++.+..-.+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~ 127 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ 127 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 467999999999999999999987654
No 175
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.66 E-value=0.001 Score=54.93 Aligned_cols=25 Identities=40% Similarity=0.598 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
.-.+++|+|++|+|||||++.+..-
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4579999999999999999999884
No 176
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.65 E-value=0.00076 Score=54.13 Aligned_cols=25 Identities=32% Similarity=0.224 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
.-.+++|+|++|+|||||++.+..-
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3578999999999999999999876
No 177
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.65 E-value=0.0012 Score=52.58 Aligned_cols=26 Identities=42% Similarity=0.538 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
...+|+|+|+.|+||||+++.+....
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 45799999999999999999998753
No 178
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.65 E-value=0.001 Score=54.16 Aligned_cols=24 Identities=33% Similarity=0.295 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHH
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCD 192 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~ 192 (266)
.-.+++|+|++|+|||||++.+..
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 468999999999999999999884
No 179
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.65 E-value=0.00098 Score=55.26 Aligned_cols=26 Identities=31% Similarity=0.413 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
.-.+++|+|++|+|||||.+.+..-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45799999999999999999996643
No 180
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.64 E-value=0.001 Score=54.61 Aligned_cols=93 Identities=19% Similarity=0.220 Sum_probs=55.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhcccc---CCC---------------eEEEEEeCCCC------C-----------
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLK---VCD---------------EVVFVEVSRTP------D----------- 213 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~f~---------------~~~wv~v~~~~------~----------- 213 (266)
.-.+++|+|++|+|||||.+.+..-.+... .|+ .+.++ .|.+ +
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v--~q~~~l~~~ltv~enl~~~~~~ 108 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALV--PEGRRIFPELTVYENLMMGAYN 108 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEE--CSSCCCCTTSBHHHHHHGGGTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEE--ecCCccCCCCcHHHHHHHhhhc
Confidence 467999999999999999999976532110 000 12233 2211 1
Q ss_pred ------HHHHHHHHHHHhc-C------CCCCCCHHHHH-HHHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699 214 ------VKRIQGDVADQLS-L------NICEGSESERA-MMLCGQLKKGKKILFVLDNIWTSLDL 264 (266)
Q Consensus 214 ------~~~~~~~i~~~~~-~------~~~~~~~~~~~-~~l~~~L~~~kr~LlvlDDvw~~~~~ 264 (266)
..+...++++.++ . .....|..+.+ -.|...|-. +.=+|+||+..+..|.
T Consensus 109 ~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~-~p~lllLDEPts~LD~ 172 (240)
T 1ji0_A 109 RKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMS-RPKLLMMDEPSLGLAP 172 (240)
T ss_dssp CCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTT-CCSEEEEECTTTTCCH
T ss_pred CCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHc-CCCEEEEcCCcccCCH
Confidence 1123344555553 3 22345644433 346667776 7889999999988774
No 181
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.64 E-value=0.0012 Score=55.01 Aligned_cols=26 Identities=27% Similarity=0.422 Sum_probs=23.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
..-.+++|+|++|+|||||++.+..-
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35679999999999999999999885
No 182
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.64 E-value=0.0012 Score=55.05 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=23.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
..-.+++|+|++|+|||||++.+..-.
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 356799999999999999999997653
No 183
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.64 E-value=0.0013 Score=51.79 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 172 VIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 172 vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
.|.|.|+.|+||||+++.+.....
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999998764
No 184
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.64 E-value=0.013 Score=53.05 Aligned_cols=27 Identities=37% Similarity=0.401 Sum_probs=23.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
...+++|+|.+|+|||||++.+....+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~ 318 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFE 318 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhh
Confidence 457999999999999999999987654
No 185
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.63 E-value=0.0019 Score=51.79 Aligned_cols=36 Identities=25% Similarity=0.302 Sum_probs=27.8
Q ss_pred HHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 159 NDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 159 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
+.+...+.......|.|+|.+|+|||||+..+....
T Consensus 27 ~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 27 DKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp HHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 344444444567899999999999999999998764
No 186
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.63 E-value=0.00078 Score=55.82 Aligned_cols=25 Identities=44% Similarity=0.502 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 171 DVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 171 ~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
.-+.|+|+.|+|||+||+.+++...
T Consensus 45 ~~vll~G~~GtGKT~la~~la~~~~ 69 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLAKAVAGEAH 69 (268)
T ss_dssp SCCCCBCSSCSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCcHHHHHHHHHHHhC
Confidence 3477999999999999999999764
No 187
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.62 E-value=0.002 Score=61.67 Aligned_cols=60 Identities=15% Similarity=0.243 Sum_probs=40.8
Q ss_pred ccccchHHHHHHHHHHhC-------C--CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCC
Q 045699 149 EAFESRKSILNDALDALS-------N--PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSR 210 (266)
Q Consensus 149 ~~~~gr~~~~~~l~~~l~-------~--~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~ 210 (266)
..++|.+..++.+...+. . .....+.++|+.|+|||++|+.+.+... ..-...+.+.++.
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~--~~~~~~i~i~~s~ 559 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIF--GDEESMIRIDMSE 559 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHH--SCTTCEEEEEGGG
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc--CCCcceEEEechh
Confidence 347788887777766653 1 1223799999999999999999999863 1223344555543
No 188
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.62 E-value=0.0011 Score=52.69 Aligned_cols=22 Identities=45% Similarity=0.682 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 045699 171 DVIGLCGVGGIGKTTLAKIVCD 192 (266)
Q Consensus 171 ~vi~I~G~~G~GKTtLa~~v~~ 192 (266)
.+|+|.|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999965
No 189
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.62 E-value=0.0013 Score=51.26 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 171 DVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 171 ~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
.+|.|.|+.|+||||+++.+.....
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999988765
No 190
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.62 E-value=0.00096 Score=53.80 Aligned_cols=94 Identities=26% Similarity=0.347 Sum_probs=56.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhcccc---CCC---------eEEEEEeCCCC------CHH---------------
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLK---VCD---------EVVFVEVSRTP------DVK--------------- 215 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~f~---------~~~wv~v~~~~------~~~--------------- 215 (266)
.-.+++|+|++|+|||||++.+..-.+... .|+ .+.| +.|.+ +..
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~--v~q~~~~~~~~tv~enl~~~~~~~~~~~~ 111 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFF--LPEEIIVPRKISVEDYLKAVASLYGVKVN 111 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEE--ECSSCCCCTTSBHHHHHHHHHHHTTCCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEE--EeCCCcCCCCCCHHHHHHHHHHhcCCchH
Confidence 457899999999999999999977543210 011 1223 33321 111
Q ss_pred -HHHHHHHHHhcCCC-----CCCCHHHH-HHHHHHHHhcCCeEEEEEeCCCCCCCCC
Q 045699 216 -RIQGDVADQLSLNI-----CEGSESER-AMMLCGQLKKGKKILFVLDNIWTSLDLE 265 (266)
Q Consensus 216 -~~~~~i~~~~~~~~-----~~~~~~~~-~~~l~~~L~~~kr~LlvlDDvw~~~~~~ 265 (266)
+-..++++.++... ...|..+. .-.+...|-. ++=+++||++.+..|..
T Consensus 112 ~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~-~p~lllLDEPts~LD~~ 167 (214)
T 1sgw_A 112 KNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLV-NAEIYVLDDPVVAIDED 167 (214)
T ss_dssp HHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTS-CCSEEEEESTTTTSCTT
T ss_pred HHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHh-CCCEEEEECCCcCCCHH
Confidence 12234555555421 13454333 3446667776 78899999999988764
No 191
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.62 E-value=0.0015 Score=53.88 Aligned_cols=25 Identities=36% Similarity=0.478 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
...+|+|+|+.|+||||+++.+...
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~ 50 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAES 50 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHh
Confidence 4579999999999999999999844
No 192
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.61 E-value=0.0013 Score=50.94 Aligned_cols=26 Identities=38% Similarity=0.524 Sum_probs=22.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
..+|.|.|+.|+||||+++.+.....
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 46789999999999999999987653
No 193
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=96.61 E-value=0.006 Score=54.47 Aligned_cols=92 Identities=18% Similarity=0.243 Sum_probs=58.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhcccc-CCC-eEEEEEeCCCC-CHHHHHHHHHHHhcC-------CCCCCC-HH--
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLK-VCD-EVVFVEVSRTP-DVKRIQGDVADQLSL-------NICEGS-ES-- 235 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~-~f~-~~~wv~v~~~~-~~~~~~~~i~~~~~~-------~~~~~~-~~-- 235 (266)
+-..++|+|..|+|||+|+.++.+...... +-+ .++++-+.+.. ...++.+++...-.. ...+.+ ..
T Consensus 150 rGQr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~ 229 (465)
T 3vr4_D 150 RGQKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERI 229 (465)
T ss_dssp TTCBCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHH
T ss_pred cCCEEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHH
Confidence 456789999999999999999998765311 111 67788887654 344566655443111 111222 11
Q ss_pred ---HHHHHHHHHHhc--CCeEEEEEeCCCC
Q 045699 236 ---ERAMMLCGQLKK--GKKILFVLDNIWT 260 (266)
Q Consensus 236 ---~~~~~l~~~L~~--~kr~LlvlDDvw~ 260 (266)
.....+.+++++ |+..||++||+..
T Consensus 230 ~a~~~a~tiAEyfrd~~G~~VLl~~DslTr 259 (465)
T 3vr4_D 230 ATPRMALTAAEYLAYEKGMHVLVIMTDMTN 259 (465)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 123456778873 6999999999753
No 194
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.60 E-value=0.012 Score=50.59 Aligned_cols=41 Identities=7% Similarity=0.109 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhCCCCC-cEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 155 KSILNDALDALSNPNV-DVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 155 ~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
+...+.+.+.+..+++ ..+.++|+.|+||||+|+.+.....
T Consensus 8 ~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~ 49 (334)
T 1a5t_A 8 RPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLL 49 (334)
T ss_dssp HHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHh
Confidence 4456667776665554 5699999999999999999988754
No 195
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.60 E-value=0.0016 Score=50.83 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
..+|.|.|+.|+||||+++.+....
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998765
No 196
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.60 E-value=0.0017 Score=50.59 Aligned_cols=27 Identities=37% Similarity=0.430 Sum_probs=24.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
...+|.|.|+.|+||||+++.+.....
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 457899999999999999999988764
No 197
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.59 E-value=0.0015 Score=49.98 Aligned_cols=27 Identities=30% Similarity=0.343 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
+..+|+|.|+.|+||||+++.+.....
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhC
Confidence 568999999999999999999988754
No 198
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.59 E-value=0.0016 Score=51.78 Aligned_cols=26 Identities=19% Similarity=0.440 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
..+++.|+|+.|+|||||++.+....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 46799999999999999999998764
No 199
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.59 E-value=0.0015 Score=50.87 Aligned_cols=25 Identities=32% Similarity=0.590 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 171 DVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 171 ~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
.+|.|.|+.|+||||+++.+.....
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999988654
No 200
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.58 E-value=0.0014 Score=54.08 Aligned_cols=25 Identities=20% Similarity=0.170 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 171 DVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 171 ~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
.+|.|+|+.|+||||||+.+.....
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4789999999999999999987653
No 201
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.58 E-value=0.0014 Score=50.69 Aligned_cols=25 Identities=32% Similarity=0.441 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 171 DVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 171 ~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
..|.|.|+.|+||||+|+.+.....
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999988754
No 202
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.57 E-value=0.0016 Score=51.33 Aligned_cols=26 Identities=31% Similarity=0.431 Sum_probs=23.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
.+..+|+|.|+.|+||||+++.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 45679999999999999999999774
No 203
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.57 E-value=0.021 Score=48.10 Aligned_cols=27 Identities=33% Similarity=0.303 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
...+++|+|.+|+||||++..+.....
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~ 123 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYK 123 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 467999999999999999999988765
No 204
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.57 E-value=0.00092 Score=54.23 Aligned_cols=86 Identities=8% Similarity=-0.062 Sum_probs=46.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCC---CCHHHHHHHHHHHH
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNICE---GSESERAMMLCGQL 245 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~l~~~L 245 (266)
...++.|.|..|+||||++..+.+..... -..++.+.-.... . -...|++.++..... .+..++...+.+.+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~--g~kVli~~~~~d~--r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~ 85 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYA--DVKYLVFKPKIDT--R-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNS 85 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHT--TCCEEEEEECCCG--G-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTT
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhc--CCEEEEEEeccCc--h-HHHHHHHhcCCCccccccCCHHHHHHHHHHHh
Confidence 45789999999999999888877765422 2233334323221 1 112344445443221 12233444444444
Q ss_pred hcCCeEEEEEeCCC
Q 045699 246 KKGKKILFVLDNIW 259 (266)
Q Consensus 246 ~~~kr~LlvlDDvw 259 (266)
.+++.-+|++|++-
T Consensus 86 ~~~~~dvViIDEaQ 99 (223)
T 2b8t_A 86 FNDETKVIGIDEVQ 99 (223)
T ss_dssp SCTTCCEEEECSGG
T ss_pred hCCCCCEEEEecCc
Confidence 44133388899874
No 205
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.56 E-value=0.0012 Score=54.35 Aligned_cols=26 Identities=38% Similarity=0.599 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
.-.+++|+|++|+|||||++.+..-.
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 46799999999999999999997653
No 206
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.56 E-value=0.0015 Score=55.50 Aligned_cols=27 Identities=37% Similarity=0.401 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
...+++|+|++|+||||+++.+....+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~ 125 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLK 125 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 457999999999999999999987654
No 207
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.56 E-value=0.00092 Score=54.23 Aligned_cols=25 Identities=32% Similarity=0.321 Sum_probs=17.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHH-HH
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVC-DQ 193 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~-~~ 193 (266)
...+++|+|++|+|||||++.+. ..
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC--
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 45789999999999999999998 54
No 208
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.55 E-value=0.0021 Score=50.20 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
....|.|+|+.|+||||+++.+...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999999886
No 209
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.55 E-value=0.0015 Score=55.51 Aligned_cols=28 Identities=21% Similarity=0.305 Sum_probs=24.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
....+|+|+|++|+|||||++.+.....
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4567999999999999999999988653
No 210
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.55 E-value=0.0015 Score=53.73 Aligned_cols=27 Identities=22% Similarity=0.316 Sum_probs=23.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
..-.+++|+|++|+|||||.+.+..-.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 356799999999999999999997653
No 211
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.54 E-value=0.0016 Score=52.06 Aligned_cols=39 Identities=21% Similarity=0.308 Sum_probs=29.3
Q ss_pred HHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 156 SILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 156 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
...+.+...+......+|.|+|.+|+|||||+..+....
T Consensus 16 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 16 RLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 334444444444567899999999999999999988764
No 212
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.53 E-value=0.0013 Score=54.27 Aligned_cols=26 Identities=27% Similarity=0.440 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
.-.+++|+|++|+|||||.+.+..-.
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45789999999999999999997653
No 213
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.53 E-value=0.0015 Score=54.20 Aligned_cols=27 Identities=33% Similarity=0.471 Sum_probs=23.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
..-.+++|+|++|+|||||++.+..-.
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 356799999999999999999997653
No 214
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.52 E-value=0.0013 Score=55.22 Aligned_cols=26 Identities=38% Similarity=0.420 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
.-.+++|+|++|+|||||.+.+..-.
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 56799999999999999999997653
No 215
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.52 E-value=0.0016 Score=54.32 Aligned_cols=94 Identities=19% Similarity=0.254 Sum_probs=56.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhcccc---CCC-----------eEEEEEeCCCC-------CH------------
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLK---VCD-----------EVVFVEVSRTP-------DV------------ 214 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~f~-----------~~~wv~v~~~~-------~~------------ 214 (266)
..-.+++|+|++|+|||||++.+..-.+... .++ .+.+ +.|.+ +.
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~~--v~q~~~~~~~~~tv~enl~~~~~~~~ 108 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGI--AFQYPEDQFFAERVFDEVAFAVKNFY 108 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEEE--ECSSGGGGCCCSSHHHHHHHTTTTTC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEEE--EeccchhhcCCCcHHHHHHHHHHhcC
Confidence 3567999999999999999999976532110 011 1222 23321 11
Q ss_pred -----HHHHHHHHHHhcCC--------CCCCCHHHHH-HHHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699 215 -----KRIQGDVADQLSLN--------ICEGSESERA-MMLCGQLKKGKKILFVLDNIWTSLDL 264 (266)
Q Consensus 215 -----~~~~~~i~~~~~~~--------~~~~~~~~~~-~~l~~~L~~~kr~LlvlDDvw~~~~~ 264 (266)
.+-..++++.++.. ....|..+.+ -.|...|-. +.=+|+||+..+..|.
T Consensus 109 ~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~-~p~lllLDEPts~LD~ 171 (266)
T 2yz2_A 109 PDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVH-EPDILILDEPLVGLDR 171 (266)
T ss_dssp TTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTT-CCSEEEEESTTTTCCH
T ss_pred CHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHc-CCCEEEEcCccccCCH
Confidence 11234456665543 1234544333 345667776 7889999999988774
No 216
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.52 E-value=0.0016 Score=54.50 Aligned_cols=27 Identities=30% Similarity=0.356 Sum_probs=23.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
..-.+++|+|++|+|||||++.+..-.
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456799999999999999999997653
No 217
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.51 E-value=0.0012 Score=56.77 Aligned_cols=48 Identities=17% Similarity=0.254 Sum_probs=35.3
Q ss_pred cccccchHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 148 YEAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 148 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
..+++|.+..+..+...+.......+.|+|+.|+|||+||+.+.+...
T Consensus 23 f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 23 FSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred chhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCc
Confidence 556888877665544433333344589999999999999999998754
No 218
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.50 E-value=0.0019 Score=55.34 Aligned_cols=27 Identities=22% Similarity=0.390 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
...+|+|.|++|+|||||++.+..-..
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 456999999999999999999987654
No 219
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=96.49 E-value=0.0073 Score=53.90 Aligned_cols=93 Identities=15% Similarity=0.145 Sum_probs=58.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccc--------cCCC-eEEEEEeCCCCC-HHHHHHHHHHHhcC--------CC
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKL--------KVCD-EVVFVEVSRTPD-VKRIQGDVADQLSL--------NI 229 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~--------~~f~-~~~wv~v~~~~~-~~~~~~~i~~~~~~--------~~ 229 (266)
.+-..++|+|..|+|||+|+.++.+..... ++-+ .++++-+.+... ..++.+++...-.. ..
T Consensus 145 grGQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~ 224 (464)
T 3gqb_B 145 VRGQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKA 224 (464)
T ss_dssp BTTCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEET
T ss_pred ccCCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECC
Confidence 346788999999999999999998886542 1222 677788876543 44555554432101 11
Q ss_pred CCCCHH-----HHHHHHHHHHhc--CCeEEEEEeCCCC
Q 045699 230 CEGSES-----ERAMMLCGQLKK--GKKILFVLDNIWT 260 (266)
Q Consensus 230 ~~~~~~-----~~~~~l~~~L~~--~kr~LlvlDDvw~ 260 (266)
+..... .....+.+++++ |+..||++||+..
T Consensus 225 d~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlTr 262 (464)
T 3gqb_B 225 DDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDMTN 262 (464)
T ss_dssp TSCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 222222 223456778873 6999999999753
No 220
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.48 E-value=0.0022 Score=50.18 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
...+|.|.|+.|+||||+++.+.....
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356899999999999999999987653
No 221
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.45 E-value=0.002 Score=50.22 Aligned_cols=26 Identities=23% Similarity=0.189 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
..+|.|.|+.|+||||+|+.+.....
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46799999999999999999987643
No 222
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.45 E-value=0.0037 Score=54.24 Aligned_cols=45 Identities=22% Similarity=0.124 Sum_probs=34.3
Q ss_pred ccchHHHHHHHHHHhC-------------C--CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 151 FESRKSILNDALDALS-------------N--PNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 151 ~~gr~~~~~~l~~~l~-------------~--~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
++|.+..++.+...+. . .....+.++|+.|+|||++|+.+.+...
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 5777777777766551 1 1346789999999999999999998763
No 223
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.45 E-value=0.0022 Score=49.67 Aligned_cols=27 Identities=30% Similarity=0.272 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
...+++|+|+.|+|||||+..+.....
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhH
Confidence 467999999999999999999988754
No 224
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.45 E-value=0.0021 Score=49.99 Aligned_cols=25 Identities=24% Similarity=0.258 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
...|.+.|+.|+||||+++.+....
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998754
No 225
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=96.44 E-value=0.026 Score=50.97 Aligned_cols=98 Identities=14% Similarity=0.233 Sum_probs=59.7
Q ss_pred HHHhCC-CCCcEEEEEcCCCCcHHHH-HHHHHHHhcc----ccCCC-eEEEEEeCCCCC-HHHHHHHHHHHhcC------
Q 045699 162 LDALSN-PNVDVIGLCGVGGIGKTTL-AKIVCDQAKK----LKVCD-EVVFVEVSRTPD-VKRIQGDVADQLSL------ 227 (266)
Q Consensus 162 ~~~l~~-~~~~vi~I~G~~G~GKTtL-a~~v~~~~~~----~~~f~-~~~wv~v~~~~~-~~~~~~~i~~~~~~------ 227 (266)
++.+.. .+-..++|+|..|+|||+| ...+.|.... ..+-+ .++++-+.+..+ ..++.+++...-..
T Consensus 153 ID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvvV 232 (510)
T 2ck3_A 153 VDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVV 232 (510)
T ss_dssp HHHHSCCBTTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEEE
T ss_pred eccccccccCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceEE
Confidence 344432 4567899999999999999 5677776542 11234 578888887654 44555555542211
Q ss_pred --CCCCCCHHH-----HHHHHHHHHhc-CCeEEEEEeCCC
Q 045699 228 --NICEGSESE-----RAMMLCGQLKK-GKKILFVLDNIW 259 (266)
Q Consensus 228 --~~~~~~~~~-----~~~~l~~~L~~-~kr~LlvlDDvw 259 (266)
..+...... ....+.+++++ |+..||++||+.
T Consensus 233 ~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dslt 272 (510)
T 2ck3_A 233 SATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLS 272 (510)
T ss_dssp EECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHH
Confidence 111211211 12345666665 699999999975
No 226
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.44 E-value=0.0023 Score=50.58 Aligned_cols=27 Identities=30% Similarity=0.299 Sum_probs=23.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
....+|.|.|+.|+||||+++.+....
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 346789999999999999999998764
No 227
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=96.44 E-value=0.024 Score=51.15 Aligned_cols=94 Identities=18% Similarity=0.204 Sum_probs=58.5
Q ss_pred HHHhCC-CCCcEEEEEcCCCCcHHHHH-HHHHHHhccccCCC-eEEEEEeCCCCC-HHHHHHHHHHHhcC-------CCC
Q 045699 162 LDALSN-PNVDVIGLCGVGGIGKTTLA-KIVCDQAKKLKVCD-EVVFVEVSRTPD-VKRIQGDVADQLSL-------NIC 230 (266)
Q Consensus 162 ~~~l~~-~~~~vi~I~G~~G~GKTtLa-~~v~~~~~~~~~f~-~~~wv~v~~~~~-~~~~~~~i~~~~~~-------~~~ 230 (266)
++.+.. .+-..++|+|..|+|||+|| ..+.+.. +-+ .++++-+.+..+ ..++.+++...-.. ...
T Consensus 153 ID~l~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~ata 228 (502)
T 2qe7_A 153 IDSMIPIGRGQRELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASA 228 (502)
T ss_dssp HHHSSCCBTTCBCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECT
T ss_pred cccccccccCCEEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECC
Confidence 444432 45678999999999999994 5787764 235 457888887653 34555555542222 111
Q ss_pred CCC-HHH-----HHHHHHHHHhc-CCeEEEEEeCCC
Q 045699 231 EGS-ESE-----RAMMLCGQLKK-GKKILFVLDNIW 259 (266)
Q Consensus 231 ~~~-~~~-----~~~~l~~~L~~-~kr~LlvlDDvw 259 (266)
+.+ ... ....+.+++++ |+..||++||+.
T Consensus 229 d~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dslt 264 (502)
T 2qe7_A 229 SEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDLS 264 (502)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecHH
Confidence 222 221 12345666665 699999999975
No 228
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.44 E-value=0.0018 Score=50.96 Aligned_cols=24 Identities=33% Similarity=0.426 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 171 DVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 171 ~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
+.|.|+|++|+|||||++.+....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 458899999999999999998763
No 229
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.44 E-value=0.053 Score=49.20 Aligned_cols=27 Identities=30% Similarity=0.356 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
...+|.|+|.+|+||||++..+.....
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~ 126 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQ 126 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357999999999999999999986554
No 230
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.40 E-value=0.0019 Score=50.18 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 171 DVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 171 ~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
.+|.|.|+.|+||||+|+.+.....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999988653
No 231
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.40 E-value=0.0018 Score=53.23 Aligned_cols=23 Identities=43% Similarity=0.677 Sum_probs=21.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhc
Q 045699 173 IGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 173 i~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
+.|+|++|+|||||++.+.+...
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 89999999999999999998754
No 232
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.40 E-value=0.0022 Score=55.75 Aligned_cols=27 Identities=37% Similarity=0.401 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
...+++|+|++|+|||||++.+....+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~ 182 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLK 182 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhcc
Confidence 457999999999999999999987654
No 233
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.40 E-value=0.0012 Score=51.30 Aligned_cols=27 Identities=22% Similarity=0.321 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcc
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQAKK 196 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~~~~ 196 (266)
..+++|+|..|+|||||++.+..-...
T Consensus 2 ~~~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 2 SLILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp -CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 368999999999999999999877553
No 234
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.39 E-value=0.002 Score=55.09 Aligned_cols=45 Identities=22% Similarity=0.248 Sum_probs=35.7
Q ss_pred ccccchHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 149 EAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 149 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
..++|++..++.+...+.. ...+.++|+.|+|||+||+.+.+...
T Consensus 27 ~~i~g~~~~~~~l~~~l~~--~~~vll~G~pGtGKT~la~~la~~~~ 71 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICT--GGHILLEGVPGLAKTLSVNTLAKTMD 71 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHH--TCCEEEESCCCHHHHHHHHHHHHHTT
T ss_pred cceeCcHHHHHHHHHHHHc--CCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 3577888888877776643 24788999999999999999988653
No 235
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=96.39 E-value=0.0019 Score=53.92 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 045699 172 VIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 172 vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
.++|+|++|+|||||.+.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998864
No 236
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.37 E-value=0.0027 Score=50.30 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=23.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
..+|.|.|+.|+||||+++.+.....
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 35899999999999999999998765
No 237
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.35 E-value=0.0022 Score=49.19 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 171 DVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 171 ~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
.+|.|.|+.|+||||+|+.+.....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999988653
No 238
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.35 E-value=0.0024 Score=50.12 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=23.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
..+|.|.|+.|+||||+|+.+.....
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999988653
No 239
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=96.35 E-value=0.023 Score=51.34 Aligned_cols=88 Identities=15% Similarity=0.206 Sum_probs=56.0
Q ss_pred CCCcEEEEEcCCCCcHHHHH-HHHHHHhccccCCC-eEEEEEeCCCCC-HHHHHHHHHHHhcC--------CCCCCCHHH
Q 045699 168 PNVDVIGLCGVGGIGKTTLA-KIVCDQAKKLKVCD-EVVFVEVSRTPD-VKRIQGDVADQLSL--------NICEGSESE 236 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa-~~v~~~~~~~~~f~-~~~wv~v~~~~~-~~~~~~~i~~~~~~--------~~~~~~~~~ 236 (266)
.+-..++|+|..|+|||+|| ..+.+.. .-+ .++++-+.+..+ ..++.+++...-.. ..+......
T Consensus 173 grGQR~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r 248 (515)
T 2r9v_A 173 GRGQRELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQ 248 (515)
T ss_dssp ETTCBEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHH
T ss_pred ccCCEEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHH
Confidence 35678999999999999995 5777764 245 467888887653 44555555542211 112211211
Q ss_pred -----HHHHHHHHHhc-CCeEEEEEeCCC
Q 045699 237 -----RAMMLCGQLKK-GKKILFVLDNIW 259 (266)
Q Consensus 237 -----~~~~l~~~L~~-~kr~LlvlDDvw 259 (266)
....+.+++++ |+..||++||+.
T Consensus 249 ~~a~~~a~tiAEyfrd~G~dVLli~DslT 277 (515)
T 2r9v_A 249 YIAPYAGCAMGEYFAYSGRDALVVYDDLS 277 (515)
T ss_dssp HHHHHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEeccHH
Confidence 23345666665 699999999975
No 240
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.34 E-value=0.0026 Score=52.88 Aligned_cols=28 Identities=25% Similarity=0.309 Sum_probs=24.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
....+++|+|++|+|||||++.+..-..
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~ 50 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYIN 50 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCC
Confidence 4567999999999999999999977543
No 241
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.34 E-value=0.003 Score=53.64 Aligned_cols=46 Identities=15% Similarity=0.285 Sum_probs=33.9
Q ss_pred cccchHHHHHHHHHHhC--CCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 150 AFESRKSILNDALDALS--NPNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 150 ~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
+++|....+..+.+.+. ......+.|+|..|+|||++|+.+++...
T Consensus 3 ~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~ 50 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSA 50 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSS
T ss_pred CcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCc
Confidence 45676666666665543 23445678999999999999999998653
No 242
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.33 E-value=0.013 Score=56.25 Aligned_cols=94 Identities=14% Similarity=0.235 Sum_probs=55.9
Q ss_pred cccccchHHHHHHHHHHhC----C---------CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCH
Q 045699 148 YEAFESRKSILNDALDALS----N---------PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDV 214 (266)
Q Consensus 148 ~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~ 214 (266)
..++.|.+..++.|.+.+. . ...+-+.++|+.|+|||.||+.+.+.... -++.++ .
T Consensus 476 w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~-------~f~~v~----~ 544 (806)
T 3cf2_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA-------NFISIK----G 544 (806)
T ss_dssp STTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTC-------EEEECC----H
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCC-------ceEEec----c
Confidence 4456777777777765542 1 12355789999999999999999997642 123332 2
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCC
Q 045699 215 KRIQGDVADQLSLNICEGSESERAMMLCGQLKKGKKILFVLDNIWTS 261 (266)
Q Consensus 215 ~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~L~~~kr~LlvlDDvw~~ 261 (266)
.+++ ..+...+... ...+.+.-+....++|++|++..-
T Consensus 545 ~~l~--------s~~vGese~~-vr~lF~~Ar~~~P~IifiDEiDsl 582 (806)
T 3cf2_A 545 PELL--------TMWFGESEAN-VREIFDKARQAAPCVLFFDELDSI 582 (806)
T ss_dssp HHHH--------TTTCSSCHHH-HHHHHHHHHTTCSEEEECSCGGGC
T ss_pred chhh--------ccccchHHHH-HHHHHHHHHHcCCceeechhhhHH
Confidence 2221 1222334333 333433333227899999998753
No 243
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.33 E-value=0.0032 Score=48.97 Aligned_cols=26 Identities=23% Similarity=0.203 Sum_probs=22.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
..+|.|.|+.|+||||+++.+.....
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999987643
No 244
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.30 E-value=0.005 Score=53.65 Aligned_cols=25 Identities=32% Similarity=0.368 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
...+.++|+.|+|||++|+.+.+..
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHh
Confidence 4578899999999999999999876
No 245
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.30 E-value=0.0024 Score=53.90 Aligned_cols=28 Identities=21% Similarity=0.439 Sum_probs=24.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
..-.+++|+|++|+|||||.+.+..-..
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~ 89 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLMMIMGELE 89 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 3567999999999999999999987643
No 246
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.29 E-value=0.0028 Score=52.43 Aligned_cols=25 Identities=32% Similarity=0.513 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
..+|.|.|+.|+||||+|+.+....
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998864
No 247
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.29 E-value=0.0044 Score=55.64 Aligned_cols=48 Identities=17% Similarity=0.174 Sum_probs=36.1
Q ss_pred cccccchHHHHHHHHHH---hCCC--CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 148 YEAFESRKSILNDALDA---LSNP--NVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 148 ~~~~~gr~~~~~~l~~~---l~~~--~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
..+++|.+..++.+..+ +... ..+-+.++|+.|+|||+||+.+.+...
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 46788988877655443 3222 235788999999999999999999865
No 248
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.28 E-value=0.003 Score=49.29 Aligned_cols=23 Identities=39% Similarity=0.547 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 045699 172 VIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 172 vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
+|+|.|+.|+||||+++.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998875
No 249
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.28 E-value=0.0014 Score=52.15 Aligned_cols=25 Identities=32% Similarity=0.488 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 171 DVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 171 ~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
.+|+|.|+.|+||||+++.+.....
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3789999999999999999988754
No 250
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=96.28 E-value=0.027 Score=50.75 Aligned_cols=89 Identities=15% Similarity=0.239 Sum_probs=55.2
Q ss_pred CCCcEEEEEcCCCCcHHHHH-HHHHHHhccccCCCeEEEEEeCCCCC-HHHHHHHHHHHhcCC-------CCCCC-HHH-
Q 045699 168 PNVDVIGLCGVGGIGKTTLA-KIVCDQAKKLKVCDEVVFVEVSRTPD-VKRIQGDVADQLSLN-------ICEGS-ESE- 236 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa-~~v~~~~~~~~~f~~~~wv~v~~~~~-~~~~~~~i~~~~~~~-------~~~~~-~~~- 236 (266)
.+-..++|+|..|+|||+|+ ..+.|.. +.-..++++-+++..+ ..++.+++...-... ..+.+ ...
T Consensus 160 grGQR~~Ifg~~g~GKT~l~l~~I~n~~---~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~ 236 (513)
T 3oaa_A 160 GRGQRELIIGDRQTGKTALAIDAIINQR---DSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQY 236 (513)
T ss_dssp BTTCBCEEEESSSSSHHHHHHHHHHTTS---SSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHH
T ss_pred ccCCEEEeecCCCCCcchHHHHHHHhhc---cCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHHH
Confidence 45678999999999999995 6777742 2223467899987654 345555544432111 11122 111
Q ss_pred ----HHHHHHHHHhc-CCeEEEEEeCCC
Q 045699 237 ----RAMMLCGQLKK-GKKILFVLDNIW 259 (266)
Q Consensus 237 ----~~~~l~~~L~~-~kr~LlvlDDvw 259 (266)
....+.+++++ |+..||++||+.
T Consensus 237 ~a~~~a~tiAEyfrd~G~dVLli~Dslt 264 (513)
T 3oaa_A 237 LAPYAGCAMGEYFRDRGEDALIIYDDLS 264 (513)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEETHH
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEecChH
Confidence 12334556654 699999999975
No 251
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.28 E-value=0.0031 Score=48.10 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 172 VIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 172 vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
.|.|.|+.|+||||+|+.+.....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999988653
No 252
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.28 E-value=0.0028 Score=53.84 Aligned_cols=28 Identities=18% Similarity=0.297 Sum_probs=24.4
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 167 NPNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 167 ~~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
-+.-.+++|+|++|+|||||++.+..-.
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred ecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 3567899999999999999999998754
No 253
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.27 E-value=0.003 Score=48.88 Aligned_cols=26 Identities=27% Similarity=0.323 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
...+|.|.|+.|+||||+++.+....
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999998865
No 254
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.26 E-value=0.0037 Score=49.33 Aligned_cols=26 Identities=27% Similarity=0.227 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
....|.|.|+.|+||||+|+.+....
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999998765
No 255
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.25 E-value=0.002 Score=49.93 Aligned_cols=26 Identities=27% Similarity=0.356 Sum_probs=18.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
..+|.|.|+.|+||||+|+.+.....
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999999987643
No 256
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.23 E-value=0.0093 Score=46.54 Aligned_cols=24 Identities=25% Similarity=0.470 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 172 VIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 172 vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
.|+|.|+.|+||||+++.+.+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999988763
No 257
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.23 E-value=0.0035 Score=50.28 Aligned_cols=26 Identities=27% Similarity=0.192 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
...|.|.|+.|+||||+++.+.....
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46799999999999999999988653
No 258
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.23 E-value=0.0035 Score=49.69 Aligned_cols=32 Identities=22% Similarity=0.283 Sum_probs=25.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhccccCCCe
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDE 202 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~ 202 (266)
..+|.|.|+.|+||||+++.+...... .+++.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~-~~~~~ 41 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKN-NNVEV 41 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHH-TTCCE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH-cCCcE
Confidence 568999999999999999999887542 24444
No 259
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=96.22 E-value=0.008 Score=53.85 Aligned_cols=98 Identities=18% Similarity=0.256 Sum_probs=62.3
Q ss_pred HHHhCC-CCCcEEEEEcCCCCcHHHHHHHHHHHhccccC--CCeEEEEEeCCCCC-HHHHHHHHHHHhcC-------CCC
Q 045699 162 LDALSN-PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKV--CDEVVFVEVSRTPD-VKRIQGDVADQLSL-------NIC 230 (266)
Q Consensus 162 ~~~l~~-~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~--f~~~~wv~v~~~~~-~~~~~~~i~~~~~~-------~~~ 230 (266)
++.+.. .+-..++|+|..|+|||+|+.++.++....+. -+.++++-+.+... ..++.+++...-.. ...
T Consensus 143 ID~l~pigrGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~ts 222 (469)
T 2c61_A 143 IDGTNTLVRGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLA 222 (469)
T ss_dssp HHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEET
T ss_pred eeeeeccccCCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECC
Confidence 444432 35678899999999999999999988654321 24677888876543 45666666543211 111
Q ss_pred CCC-HH-----HHHHHHHHHHh--cCCeEEEEEeCCC
Q 045699 231 EGS-ES-----ERAMMLCGQLK--KGKKILFVLDNIW 259 (266)
Q Consensus 231 ~~~-~~-----~~~~~l~~~L~--~~kr~LlvlDDvw 259 (266)
+.+ .. .....+.++++ .|+..||++||+.
T Consensus 223 d~p~~~r~~~~~~a~tiAEyfrdd~G~dVLl~~Dslt 259 (469)
T 2c61_A 223 DDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDIT 259 (469)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeCHH
Confidence 222 11 22345567776 3799999999964
No 260
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.22 E-value=0.012 Score=49.41 Aligned_cols=41 Identities=20% Similarity=0.163 Sum_probs=29.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeC
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVS 209 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~ 209 (266)
..-.+++|+|.+|+|||||++.+........ -..++|+...
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~-G~~v~~~~~e 73 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQWGTAM-GKKVGLAMLE 73 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHHHTS-CCCEEEEESS
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHHc-CCeEEEEeCc
Confidence 4567999999999999999999988764321 1145566543
No 261
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.22 E-value=0.0028 Score=61.46 Aligned_cols=46 Identities=24% Similarity=0.372 Sum_probs=35.0
Q ss_pred cccchHHHHHHHHHHhC-------CC--CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 150 AFESRKSILNDALDALS-------NP--NVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 150 ~~~gr~~~~~~l~~~l~-------~~--~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
.++|.+..++.+...+. ++ ....+.|+|+.|+|||++|+.+.+...
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~ 613 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF 613 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 46788877777766552 11 235899999999999999999998763
No 262
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.21 E-value=0.0037 Score=49.65 Aligned_cols=27 Identities=26% Similarity=0.282 Sum_probs=23.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
...+|.|.|+.|+||||+++.+.....
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 356899999999999999999998764
No 263
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.20 E-value=0.0073 Score=57.70 Aligned_cols=45 Identities=16% Similarity=0.241 Sum_probs=34.3
Q ss_pred cccchHHHHHHHHHHhC-------C--CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 150 AFESRKSILNDALDALS-------N--PNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 150 ~~~gr~~~~~~l~~~l~-------~--~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
.++|.+..++.+...+. + .....+.++|+.|+|||++|+.+.+..
T Consensus 459 ~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 46787777777666542 1 123479999999999999999999876
No 264
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.20 E-value=0.0038 Score=49.78 Aligned_cols=28 Identities=32% Similarity=0.223 Sum_probs=24.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
....+|.|.|+.|+||||+++.+.....
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4467999999999999999999988654
No 265
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.19 E-value=0.0029 Score=52.16 Aligned_cols=26 Identities=35% Similarity=0.404 Sum_probs=23.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
..+|.|+|+.|+||||+++.+.....
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999987543
No 266
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.18 E-value=0.0035 Score=50.32 Aligned_cols=27 Identities=15% Similarity=0.202 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
....|.|.|+.|+||||+++.+.....
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346799999999999999999988764
No 267
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.18 E-value=0.0023 Score=54.46 Aligned_cols=26 Identities=23% Similarity=0.406 Sum_probs=23.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
..-.+++|+|++|+|||||++.+..-
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcC
Confidence 45689999999999999999999664
No 268
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.18 E-value=0.0034 Score=51.63 Aligned_cols=28 Identities=18% Similarity=0.251 Sum_probs=23.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
....+|+|.|+.|+||||+|+.+.....
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3567999999999999999999988644
No 269
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.17 E-value=0.0035 Score=49.55 Aligned_cols=27 Identities=33% Similarity=0.477 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
.+..+|+|.|+.|+||||+++.+....
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhc
Confidence 356899999999999999999998763
No 270
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.16 E-value=0.0035 Score=50.57 Aligned_cols=25 Identities=20% Similarity=0.226 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
...|.|.|+.|+||||+++.+....
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998764
No 271
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.12 E-value=0.0035 Score=49.08 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
...++|+|.+|+|||||.+.+....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4578999999999999999998753
No 272
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.11 E-value=0.0045 Score=49.93 Aligned_cols=28 Identities=25% Similarity=0.268 Sum_probs=24.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
.+.++|.|.|++|+||||.|+.+.....
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 3578999999999999999999998764
No 273
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.11 E-value=0.0042 Score=49.69 Aligned_cols=23 Identities=35% Similarity=0.469 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHH
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCD 192 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~ 192 (266)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999965
No 274
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=96.10 E-value=0.0033 Score=53.66 Aligned_cols=28 Identities=29% Similarity=0.471 Sum_probs=24.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
++.+||+|.|-||+||||.+-.+.-...
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA 73 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFS 73 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHH
Confidence 4679999999999999999998877764
No 275
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.10 E-value=0.0039 Score=49.74 Aligned_cols=23 Identities=35% Similarity=0.429 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 045699 172 VIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 172 vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
.|.|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999997764
No 276
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.09 E-value=0.0041 Score=48.96 Aligned_cols=25 Identities=24% Similarity=0.232 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
...|.|.|+.|+||||+++.+....
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998864
No 277
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.09 E-value=0.003 Score=57.44 Aligned_cols=44 Identities=20% Similarity=0.145 Sum_probs=34.7
Q ss_pred cccchHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 150 AFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 150 ~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
.++|.+..++.+...+.. ...+.++|++|+|||+||+.+.+...
T Consensus 23 ~ivGq~~~i~~l~~al~~--~~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALS--GESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp TCSSCHHHHHHHHHHHHH--TCEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred hhHHHHHHHHHHHHHHhc--CCeeEeecCchHHHHHHHHHHHHHHh
Confidence 467777777777666543 35788999999999999999998653
No 278
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.07 E-value=0.0036 Score=48.51 Aligned_cols=23 Identities=17% Similarity=0.367 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 045699 171 DVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 171 ~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
.+.+|+|++|+|||||+..++--
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 48899999999999999999753
No 279
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=96.07 E-value=0.026 Score=51.68 Aligned_cols=94 Identities=14% Similarity=0.225 Sum_probs=58.4
Q ss_pred HHHhCC-CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCC-CHHHHHHHHHH----HhcC--------
Q 045699 162 LDALSN-PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTP-DVKRIQGDVAD----QLSL-------- 227 (266)
Q Consensus 162 ~~~l~~-~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~i~~----~~~~-------- 227 (266)
++.|.. .+-..++|+|..|+|||+|+..+.+.. +-+.++++-+.+.. ...++++++-+ ..+.
T Consensus 223 ID~l~PigrGqr~~Ifgg~g~GKT~L~~~ia~~~----~~~v~V~~~iGER~~Ev~e~~~~~~el~d~~~G~~~m~rtvv 298 (600)
T 3vr4_A 223 IDTFFPVTKGGAAAVPGPFGAGKTVVQHQIAKWS----DVDLVVYVGCGERGNEMTDVVNEFPELIDPNTGESLMERTVL 298 (600)
T ss_dssp HHHHSCCBTTCEEEEECCTTSCHHHHHHHHHHHS----SCSEEEEEEEEECHHHHHHHHHHTTTCBCTTTCSBGGGGEEE
T ss_pred hhccCCccCCCEEeeecCCCccHHHHHHHHHhcc----CCCEEEEEEecccHHHHHHHHHHHHhhcccccccccccceEE
Confidence 444442 457899999999999999999998863 34678888888763 33344433321 1111
Q ss_pred --CCCCCCHHH------HHHHHHHHHhc-CCeEEEEEeCCC
Q 045699 228 --NICEGSESE------RAMMLCGQLKK-GKKILFVLDNIW 259 (266)
Q Consensus 228 --~~~~~~~~~------~~~~l~~~L~~-~kr~LlvlDDvw 259 (266)
+..+.+... ....+.+++++ |+..||++|++.
T Consensus 299 V~~tsd~p~~~R~~~~~~altiAEyfrd~G~dVLl~~Ds~t 339 (600)
T 3vr4_A 299 IANTSNMPVAAREASIYTGITIAEYFRDMGYDVAIMADSTS 339 (600)
T ss_dssp EEEETTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHH
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecchH
Confidence 111222111 23345666765 699999999974
No 280
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.07 E-value=0.0046 Score=48.06 Aligned_cols=27 Identities=26% Similarity=0.330 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
...+++|+|+.|+|||||++.+.....
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 367899999999999999999988754
No 281
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.06 E-value=0.0024 Score=51.75 Aligned_cols=25 Identities=24% Similarity=0.078 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
...+|+|.|+.|+|||||++.+...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4579999999999999999998775
No 282
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.06 E-value=0.0039 Score=52.51 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
...+|.|.|++|+||||+++.+....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998754
No 283
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.04 E-value=0.054 Score=48.47 Aligned_cols=90 Identities=11% Similarity=0.070 Sum_probs=55.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHH-hcC-------------------
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQ-LSL------------------- 227 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~-~~~------------------- 227 (266)
....++.|.|.+|+|||||+..+....... .-..++|++... +..++...++.. .+.
T Consensus 201 ~~G~liiI~G~pG~GKTtl~l~ia~~~~~~-~g~~Vl~~s~E~--s~~~l~~r~~~~~~~~~~~~l~~g~l~~~~~~~~~ 277 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAFALNIAQNVATK-TNENVAIFSLEM--SAQQLVMRMLCAEGNINAQNLRTGKLTPEDWGKLT 277 (454)
T ss_dssp CTTCEEEEECCTTSCHHHHHHHHHHHHHHH-SSCCEEEEESSS--CHHHHHHHHHHHHHTCCHHHHHTSCCCHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEEECCC--CHHHHHHHHHHHHcCCCHHHHhcCCCCHHHHHHHH
Confidence 345799999999999999999998876432 123577776554 334555444321 111
Q ss_pred --------------CCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCC
Q 045699 228 --------------NICEGSESERAMMLCGQLKKGKKILFVLDNIWT 260 (266)
Q Consensus 228 --------------~~~~~~~~~~~~~l~~~L~~~kr~LlvlDDvw~ 260 (266)
.....+..++...++......+.-+||+|.+..
T Consensus 278 ~a~~~l~~~~l~i~d~~~~s~~~i~~~~~~l~~~~~~~livID~l~~ 324 (454)
T 2r6a_A 278 MAMGSLSNAGIYIDDTPSIRVSDIRAKCRRLKQESGLGMIVIDYLQL 324 (454)
T ss_dssp HHHHHHHSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECGGG
T ss_pred HHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEccHHH
Confidence 011235666666666555432556889997654
No 284
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=96.03 E-value=0.048 Score=49.76 Aligned_cols=96 Identities=10% Similarity=0.176 Sum_probs=60.1
Q ss_pred HHHhCC-CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCH-HHHHHHHHH----HhcC--------
Q 045699 162 LDALSN-PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDV-KRIQGDVAD----QLSL-------- 227 (266)
Q Consensus 162 ~~~l~~-~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~-~~~~~~i~~----~~~~-------- 227 (266)
++.|.. .+-..++|+|..|+|||+|++.+.+.. +-+.++++-+.+..+. .++.+++-+ ..+.
T Consensus 218 ID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~----~~~~~V~~~iGER~~Ev~e~~~~~~el~d~~~g~~~m~rtvv 293 (588)
T 3mfy_A 218 IDTFFPQAKGGTAAIPGPAGSGKTVTQHQLAKWS----DAQVVIYIGCGERGNEMTDVLEEFPKLKDPKTGKPLMERTVL 293 (588)
T ss_dssp HHHHSCEETTCEEEECSCCSHHHHHHHHHHHHHS----SCSEEEEEECCSSSSHHHHHHHHTTTCEETTTTEEGGGGEEE
T ss_pred hhccCCcccCCeEEeecCCCCCHHHHHHHHHhcc----CCCEEEEEEecccHHHHHHHHHHHHHhcccccccccccceEE
Confidence 444432 456899999999999999999987753 3468889999876653 344444321 0110
Q ss_pred --CCCCCCHH------HHHHHHHHHHhc-CCeEEEEEeCCCCC
Q 045699 228 --NICEGSES------ERAMMLCGQLKK-GKKILFVLDNIWTS 261 (266)
Q Consensus 228 --~~~~~~~~------~~~~~l~~~L~~-~kr~LlvlDDvw~~ 261 (266)
...+.+.. .....+.+++++ |+..||++|++...
T Consensus 294 V~~tsd~p~~~r~~~~~~a~tiAEyfrd~G~dVLl~~DsltR~ 336 (588)
T 3mfy_A 294 IANTSNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRW 336 (588)
T ss_dssp EECCTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTTC
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEeecchHHH
Confidence 11122211 112334566654 69999999999753
No 285
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.01 E-value=0.0045 Score=49.41 Aligned_cols=23 Identities=26% Similarity=0.392 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 045699 172 VIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 172 vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
.|.|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999997754
No 286
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.01 E-value=0.0039 Score=48.98 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
...++|+|.+|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 346899999999999999999875
No 287
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.01 E-value=0.037 Score=56.20 Aligned_cols=27 Identities=22% Similarity=0.375 Sum_probs=23.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
+....++|||+.|+|||||++.+..-.
T Consensus 442 ~~G~~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 442 NAGQTVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp CTTCEEEEEECSSSCHHHHHHHHTTSS
T ss_pred cCCcEEEEEecCCCcHHHHHHHhcccc
Confidence 456899999999999999999997653
No 288
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.99 E-value=0.0044 Score=51.96 Aligned_cols=24 Identities=33% Similarity=0.666 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHH
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCD 192 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~ 192 (266)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999983
No 289
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.99 E-value=0.073 Score=45.76 Aligned_cols=51 Identities=12% Similarity=0.053 Sum_probs=36.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHH
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVAD 223 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~ 223 (266)
...++.|.|.+|+||||||..+...... .-..++|++.. -+..++...++.
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSlE--ms~~ql~~Rlls 95 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSLE--MSAEQLALRALS 95 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEESS--SCHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeCC--CCHHHHHHHHHH
Confidence 4578999999999999999999877543 22456676654 445666666544
No 290
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.98 E-value=0.005 Score=48.58 Aligned_cols=24 Identities=21% Similarity=0.376 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 172 VIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 172 vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
+|+|.|+.|+||||+++.+.....
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 899999999999999999987643
No 291
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.97 E-value=0.0049 Score=50.26 Aligned_cols=26 Identities=19% Similarity=0.326 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
..+|.|.|+.|+||||+++.+.....
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999987653
No 292
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.96 E-value=0.012 Score=47.80 Aligned_cols=28 Identities=32% Similarity=0.315 Sum_probs=24.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhcc
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAKK 196 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 196 (266)
....|.|.|+.|+||||+++.+......
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4578999999999999999999998763
No 293
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.94 E-value=0.0033 Score=51.76 Aligned_cols=26 Identities=35% Similarity=0.353 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
...+|.|+|++|+||||+|+.+....
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999999998764
No 294
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=95.93 E-value=0.0048 Score=54.26 Aligned_cols=26 Identities=31% Similarity=0.363 Sum_probs=23.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
..-.+++|+|++|+|||||.+.+..-
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCChHHHHHHHHhCC
Confidence 45689999999999999999999763
No 295
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.93 E-value=0.032 Score=45.26 Aligned_cols=27 Identities=26% Similarity=0.258 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
+...++|.|+.|+||||+|+.+.....
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKEKFG 33 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred cccceeeECCCCCCHHHHHHHHHHHhC
Confidence 346789999999999999999988764
No 296
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=95.92 E-value=0.0059 Score=56.87 Aligned_cols=46 Identities=15% Similarity=0.191 Sum_probs=37.1
Q ss_pred cccccchHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 148 YEAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 148 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
...++|.+..++.+...+... ..+.|+|++|+||||||+.+.....
T Consensus 40 l~~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 40 IDQVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp HHHCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred cceEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccCC
Confidence 456788888887777666543 5899999999999999999998754
No 297
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.90 E-value=0.0043 Score=53.99 Aligned_cols=26 Identities=15% Similarity=0.254 Sum_probs=23.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
...++|+|++|+|||||++.+..-..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999987654
No 298
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.87 E-value=0.073 Score=47.47 Aligned_cols=52 Identities=12% Similarity=0.008 Sum_probs=36.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHH
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVAD 223 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~ 223 (266)
...++.|.|.+|+||||||..+....... .-..++|++... +..++...++.
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~-~g~~vl~~slE~--~~~~l~~R~~~ 250 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALK-EGVGVGIYSLEM--PAAQLTLRMMC 250 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESSS--CHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEECCC--CHHHHHHHHHH
Confidence 45789999999999999999998775422 123577776653 34566655543
No 299
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=95.87 E-value=0.0048 Score=53.41 Aligned_cols=28 Identities=32% Similarity=0.565 Sum_probs=25.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
..-.+++|+|++|+|||||.+.+.+..+
T Consensus 69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 69 GIGQRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4678999999999999999999999864
No 300
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.86 E-value=0.0064 Score=49.73 Aligned_cols=27 Identities=19% Similarity=0.047 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
....+|.|.|+.|+||||+|+.+.+..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998764
No 301
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.84 E-value=0.03 Score=57.78 Aligned_cols=86 Identities=19% Similarity=0.225 Sum_probs=58.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCC------CCCCHHHHHHHHH
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNI------CEGSESERAMMLC 242 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~l~ 242 (266)
...++.|.|.+|+||||||..+....... -..++|++........ . +..++.+. ...+..++...+.
T Consensus 731 ~G~lVlI~G~PG~GKTtLal~lA~~aa~~--g~~VlyiS~Ees~~ql--~---A~~lGvd~~~L~i~~~~~leei~~~l~ 803 (1706)
T 3cmw_A 731 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPI--Y---ARKLGVDIDNLLCSQPDTGEQALEICD 803 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEECTTSCCCHH--H---HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCceEEEECCCCCCcHHHHHHHHHHHHHc--CCCeEEEeccchHHHH--H---HHHcCCChhheEEecCCcHHHHHHHHH
Confidence 45799999999999999999998876522 2367788777766543 2 55666432 2335566666666
Q ss_pred HHHhcCCeEEEEEeCCCCC
Q 045699 243 GQLKKGKKILFVLDNIWTS 261 (266)
Q Consensus 243 ~~L~~~kr~LlvlDDvw~~ 261 (266)
...+..+--+||+|.+-..
T Consensus 804 ~lv~~~~~~lVVIDsLq~l 822 (1706)
T 3cmw_A 804 ALARSGAVDVIVVDSVAAL 822 (1706)
T ss_dssp HHHHHTCCSEEEESCSTTC
T ss_pred HHHHccCCCEEEEechhhh
Confidence 5554436669999988654
No 302
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.80 E-value=0.006 Score=52.53 Aligned_cols=25 Identities=28% Similarity=0.270 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 171 DVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 171 ~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
.+|+|.|+.|+||||||+.+.....
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999988753
No 303
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=95.80 E-value=0.0046 Score=55.61 Aligned_cols=27 Identities=26% Similarity=0.388 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
..-.+++|+|++|+|||||++.+.+-.
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 356899999999999999999997753
No 304
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.78 E-value=0.0077 Score=48.88 Aligned_cols=26 Identities=31% Similarity=0.404 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
...+|+|.|+.|+||||+++.+....
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 46789999999999999999998754
No 305
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.76 E-value=0.0063 Score=52.85 Aligned_cols=27 Identities=22% Similarity=0.252 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
...+++|+|+.|+|||||.+.+.+...
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~ 148 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLN 148 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccc
Confidence 456999999999999999999977643
No 306
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.76 E-value=0.0043 Score=52.98 Aligned_cols=26 Identities=35% Similarity=0.454 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
.+.++.|.|+.|+|||||.+.+....
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 46799999999999999999998753
No 307
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.75 E-value=0.0057 Score=51.02 Aligned_cols=27 Identities=33% Similarity=0.340 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
.-.++.|+|++|+|||||+..+.....
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 457999999999999999999987543
No 308
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=95.74 E-value=0.0088 Score=54.01 Aligned_cols=87 Identities=14% Similarity=0.190 Sum_probs=53.3
Q ss_pred CCcEEEEEcCCCCcHHHHH-HHHHHHhccccCCC-eEEEEEeCCCCC-HHHHHHHHHHHhcC--------CCCCCC----
Q 045699 169 NVDVIGLCGVGGIGKTTLA-KIVCDQAKKLKVCD-EVVFVEVSRTPD-VKRIQGDVADQLSL--------NICEGS---- 233 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa-~~v~~~~~~~~~f~-~~~wv~v~~~~~-~~~~~~~i~~~~~~--------~~~~~~---- 233 (266)
+-..++|+|..|+|||+|| ..+.+... -+ .++++-+++... ..++.+++...-.. ..+...
T Consensus 162 rGQR~~Ifg~~g~GKT~Lal~~I~~~~~----~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~ 237 (507)
T 1fx0_A 162 RGQRELIIGDRQTGKTAVATDTILNQQG----QNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQY 237 (507)
T ss_dssp TTCBCBEEESSSSSHHHHHHHHHHTCCT----TTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTT
T ss_pred cCCEEEEecCCCCCccHHHHHHHHHhhc----CCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHH
Confidence 4678999999999999994 67777542 34 467888887653 33444444332111 111111
Q ss_pred -HHHHHHHHHHHHhc-CCeEEEEEeCCC
Q 045699 234 -ESERAMMLCGQLKK-GKKILFVLDNIW 259 (266)
Q Consensus 234 -~~~~~~~l~~~L~~-~kr~LlvlDDvw 259 (266)
.......+.+++++ |+..||++||+.
T Consensus 238 ~a~~~a~tiAEyfrd~G~dVLli~Dslt 265 (507)
T 1fx0_A 238 LAPYTGAALAEYFMYRERHTLIIYDDLS 265 (507)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEEecHH
Confidence 12233445555554 599999999974
No 309
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.74 E-value=0.0081 Score=51.39 Aligned_cols=27 Identities=30% Similarity=0.425 Sum_probs=23.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
...+|+|+|++|+||||++..+.....
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~ 130 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYA 130 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 468999999999999999999987654
No 310
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.73 E-value=0.007 Score=48.29 Aligned_cols=23 Identities=30% Similarity=0.287 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 045699 172 VIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 172 vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
.|.|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998865
No 311
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.72 E-value=0.0072 Score=48.66 Aligned_cols=23 Identities=35% Similarity=0.403 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 045699 172 VIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 172 vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
.|.|.|+.|+||||+++.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998765
No 312
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.71 E-value=0.0072 Score=52.90 Aligned_cols=28 Identities=29% Similarity=0.192 Sum_probs=24.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 167 NPNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 167 ~~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
-....+++|+|+.|+|||||++.+....
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3556799999999999999999999754
No 313
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.68 E-value=0.0095 Score=52.06 Aligned_cols=29 Identities=24% Similarity=0.312 Sum_probs=24.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 167 NPNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 167 ~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
-....+++|+|++|+|||||++.+..-..
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 34567999999999999999999977543
No 314
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.68 E-value=0.015 Score=50.43 Aligned_cols=36 Identities=28% Similarity=0.394 Sum_probs=27.6
Q ss_pred HHHHHHhC--CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 159 NDALDALS--NPNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 159 ~~l~~~l~--~~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
..++..+. ..+..+|+|+|.+|+|||||+..+....
T Consensus 66 ~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 66 QQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 34444443 4567899999999999999999987664
No 315
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.67 E-value=0.0076 Score=48.24 Aligned_cols=26 Identities=23% Similarity=0.247 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
...|.|.|+.|+||||+++.+.....
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999988653
No 316
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.66 E-value=0.042 Score=57.50 Aligned_cols=85 Identities=19% Similarity=0.239 Sum_probs=59.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCC------CCCCHHHHHHHHH
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNI------CEGSESERAMMLC 242 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~l~ 242 (266)
...++-|.|++|+||||||..+...... .-..++|++....++... ++.++.+. ...+.+++...+.
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a~--~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~ 454 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQR--EGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 454 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHT--TTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHh--cCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHH
Confidence 5679999999999999999999887652 224688888888776542 55666532 2234566666665
Q ss_pred HHHhcCCeEEEEEeCCCC
Q 045699 243 GQLKKGKKILFVLDNIWT 260 (266)
Q Consensus 243 ~~L~~~kr~LlvlDDvw~ 260 (266)
...+.++--+||+|-+-.
T Consensus 455 ~lv~~~~~~lIVIDSL~a 472 (2050)
T 3cmu_A 455 ALARSGAVDVIVVDSVAA 472 (2050)
T ss_dssp HHHHHTCCSEEEESCGGG
T ss_pred HHHHhcCCcEEEECCHHH
Confidence 555443566999998754
No 317
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.66 E-value=0.0093 Score=48.28 Aligned_cols=27 Identities=26% Similarity=0.097 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
....|.|.|+.|+||||+|+.+.....
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346799999999999999999988753
No 318
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=95.64 E-value=0.0079 Score=53.71 Aligned_cols=47 Identities=23% Similarity=0.253 Sum_probs=34.7
Q ss_pred ccccchHHHHHHHHHHhCC--------------CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 149 EAFESRKSILNDALDALSN--------------PNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 149 ~~~~gr~~~~~~l~~~l~~--------------~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
..++|.+..++.|...+.. ...+-|.++|+.|+||||+|+.+.....
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~ 75 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3467877777766544411 1346799999999999999999998764
No 319
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.64 E-value=0.0064 Score=46.20 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 045699 171 DVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 171 ~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
..|+|+|.+|+|||||.+.+.+.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999764
No 320
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=95.63 E-value=0.039 Score=39.61 Aligned_cols=81 Identities=15% Similarity=0.087 Sum_probs=47.0
Q ss_pred hhchHHHHHHHHhhhhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCccchHHHHHHHHHHHHHHHHHhhh
Q 045699 5 IFSIPAKVLGQLVGTIPGQLRNYKSNFADLKKKTEKLKLTIEDLQLWV-DAAKENGEEIEQSVERWLISANTTVVEAGKL 83 (266)
Q Consensus 5 ~v~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~el~~l~~~l~~i~~~l-~~ae~~~~~~~~~~~~Wl~~vr~~a~d~ed~ 83 (266)
+++.+..-++.++..-...+.+++.+++.++++|+.|+++|.++...- ......-..--..++.-.-.+.|+..+..--
T Consensus 2 ~v~~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~~ 81 (115)
T 3qfl_A 2 AISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLVQ 81 (115)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455444444444444589999999999999999999999875430 0000000011234555555666665544443
Q ss_pred HH
Q 045699 84 IE 85 (266)
Q Consensus 84 ld 85 (266)
++
T Consensus 82 ~~ 83 (115)
T 3qfl_A 82 VD 83 (115)
T ss_dssp HH
T ss_pred hc
Confidence 33
No 321
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=95.62 E-value=0.037 Score=43.69 Aligned_cols=49 Identities=16% Similarity=0.264 Sum_probs=31.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 045699 172 VIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVA 222 (266)
Q Consensus 172 vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~ 222 (266)
.|.|=|.-|+||||.++.+.+..+.++ -.++...-+......+..+.++
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g--~~v~~treP~~t~~~~~ir~~l 50 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRG--KKVILKREPGGTETGEKIRKIL 50 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC--CcEEEEECCCCCcHHHHHHHHh
Confidence 367779999999999999999876332 2334444333333334444444
No 322
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.61 E-value=0.039 Score=56.00 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=22.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
+....++|||..|+|||||++.+..-
T Consensus 1103 ~~Ge~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A 1103 EPGQTLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp CTTCEEEEECSTTSSTTSHHHHHTTS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcC
Confidence 45678999999999999999999664
No 323
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.57 E-value=0.0078 Score=55.26 Aligned_cols=94 Identities=23% Similarity=0.238 Sum_probs=57.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccc-cC-----------CC---------------eEEEEEeCCCC---------
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKL-KV-----------CD---------------EVVFVEVSRTP--------- 212 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~-~~-----------f~---------------~~~wv~v~~~~--------- 212 (266)
.-.+++|+|++|+|||||++.+..-.... +. |+ ..+ ..+.+..
T Consensus 46 ~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~q~~~~~~~~~~~ 124 (538)
T 1yqt_A 46 EGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRP-VVKPQYVDLIPKAVKG 124 (538)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCC-EEECSCGGGSGGGCCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhh-hhhhhhhhhcchhhhc
Confidence 45799999999999999999998753211 00 10 000 0112211
Q ss_pred CHHH---------HHHHHHHHhcCC------CCCCCHHHH-HHHHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699 213 DVKR---------IQGDVADQLSLN------ICEGSESER-AMMLCGQLKKGKKILFVLDNIWTSLDL 264 (266)
Q Consensus 213 ~~~~---------~~~~i~~~~~~~------~~~~~~~~~-~~~l~~~L~~~kr~LlvlDDvw~~~~~ 264 (266)
+..+ -..+++..++.. ....|..+. .-.|...|.. +.=+|+||+..+.+|.
T Consensus 125 ~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~-~P~lLlLDEPTs~LD~ 191 (538)
T 1yqt_A 125 KVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLR-NATFYFFDEPSSYLDI 191 (538)
T ss_dssp BHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHS-CCSEEEEESTTTTCCH
T ss_pred cHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhc-CCCEEEEECCcccCCH
Confidence 1211 134567777652 224564443 3456777777 8889999999998874
No 324
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.56 E-value=0.0058 Score=53.16 Aligned_cols=26 Identities=38% Similarity=0.422 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
....++|+|+.|+|||||++.+..-.
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 45789999999999999999998754
No 325
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.55 E-value=0.011 Score=52.58 Aligned_cols=29 Identities=21% Similarity=0.179 Sum_probs=25.0
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 167 NPNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 167 ~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
.....+++|+|+.|+|||||.+.+.....
T Consensus 164 ~~~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 164 KRPHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp TSSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred HhcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 35567999999999999999999988754
No 326
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.54 E-value=0.026 Score=50.62 Aligned_cols=42 Identities=24% Similarity=0.405 Sum_probs=31.7
Q ss_pred chHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 153 SRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 153 gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
+....+..+..++.... ..+.|.|.+|+||||++..+.....
T Consensus 29 ~Q~~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l~ 70 (459)
T 3upu_A 29 GQKNAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEALI 70 (459)
T ss_dssp HHHHHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 34455566666665433 3999999999999999999988765
No 327
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=95.54 E-value=0.0078 Score=53.31 Aligned_cols=25 Identities=20% Similarity=0.314 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
...+++|+|.+|+|||||.+.+..-
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCC
Confidence 5679999999999999999999883
No 328
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.52 E-value=0.0087 Score=51.17 Aligned_cols=24 Identities=38% Similarity=0.373 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 171 DVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 171 ~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
.+|.|+|+.|+||||||+.+....
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 589999999999999999998864
No 329
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.52 E-value=0.044 Score=56.51 Aligned_cols=86 Identities=19% Similarity=0.225 Sum_probs=63.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCC------CCCHHHHHHHHH
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNIC------EGSESERAMMLC 242 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~------~~~~~~~~~~l~ 242 (266)
.-++|-|+|+.|+||||||-++....+ ..=..++|+...+..++.- ++++|.+.+ +.+.++-...+.
T Consensus 1430 rg~~iei~g~~~sGkttl~~~~~a~~~--~~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~~ 1502 (1706)
T 3cmw_A 1430 MGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1502 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHH--hcCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHHH
Confidence 458999999999999999999987654 3446788998888877763 778888543 223445555666
Q ss_pred HHHhcCCeEEEEEeCCCCC
Q 045699 243 GQLKKGKKILFVLDNIWTS 261 (266)
Q Consensus 243 ~~L~~~kr~LlvlDDvw~~ 261 (266)
..++++.--+||+|-|-..
T Consensus 1503 ~~~~s~~~~~vvvDsv~al 1521 (1706)
T 3cmw_A 1503 ALARSGAVDVIVVDSVAAL 1521 (1706)
T ss_dssp HHHHHTCCSEEEESCSTTC
T ss_pred HHHHcCCCCEEEEccHHhC
Confidence 6777767779999987543
No 330
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.52 E-value=0.011 Score=48.35 Aligned_cols=27 Identities=26% Similarity=0.300 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
...++.+.|.||+|||||+..+.....
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 467889999999999999999986654
No 331
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.52 E-value=0.0098 Score=44.45 Aligned_cols=23 Identities=17% Similarity=0.335 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 045699 171 DVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 171 ~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
..|.|+|..|+|||||...+.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999765
No 332
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.51 E-value=0.0072 Score=46.77 Aligned_cols=21 Identities=33% Similarity=0.431 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 045699 172 VIGLCGVGGIGKTTLAKIVCD 192 (266)
Q Consensus 172 vi~I~G~~G~GKTtLa~~v~~ 192 (266)
-|.|+|.+|+|||||.+.+.+
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 588999999999999999876
No 333
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.51 E-value=0.1 Score=47.58 Aligned_cols=87 Identities=14% Similarity=0.149 Sum_probs=49.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcC----------------CCCCC
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSL----------------NICEG 232 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~----------------~~~~~ 232 (266)
.-.+++|+|.+|+|||||++.+........ ..++++.... ....+...+ ..++. .....
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G--~~vi~~~~ee--~~~~l~~~~-~~~g~~~~~~~~~g~~~~~~~~p~~L 354 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENACANK--ERAILFAYEE--SRAQLLRNA-YSWGMDFEEMERQNLLKIVCAYPESA 354 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHHHTTT--CCEEEEESSS--CHHHHHHHH-HTTSCCHHHHHHTTSEEECCCCGGGS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhCC--CCEEEEEEeC--CHHHHHHHH-HHcCCCHHHHHhCCCEEEEEeccccC
Confidence 457999999999999999999988754321 2334444322 233443322 11211 11123
Q ss_pred CHHHHHHHH-HHHHhcCCeEEEEEeCCCCCC
Q 045699 233 SESERAMML-CGQLKKGKKILFVLDNIWTSL 262 (266)
Q Consensus 233 ~~~~~~~~l-~~~L~~~kr~LlvlDDvw~~~ 262 (266)
+..+.+..+ ...+.. +.=+|||| ..+.+
T Consensus 355 S~g~~q~~~~a~~l~~-~p~llilD-p~~~L 383 (525)
T 1tf7_A 355 GLEDHLQIIKSEINDF-KPARIAID-SLSAL 383 (525)
T ss_dssp CHHHHHHHHHHHHHTT-CCSEEEEE-CHHHH
T ss_pred CHHHHHHHHHHHHHhh-CCCEEEEc-ChHHH
Confidence 555555444 444555 67788999 54433
No 334
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.50 E-value=0.0044 Score=52.27 Aligned_cols=26 Identities=19% Similarity=0.314 Sum_probs=20.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
+..+|+|.|+.|+||||+|+.+....
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998754
No 335
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.49 E-value=0.0083 Score=46.30 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 045699 171 DVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 171 ~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
..|+++|.+|+|||||.+.+.+.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999999874
No 336
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.48 E-value=0.0086 Score=50.31 Aligned_cols=23 Identities=30% Similarity=0.383 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 045699 171 DVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 171 ~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
.+|.|.|+.|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999874
No 337
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=95.48 E-value=0.009 Score=53.92 Aligned_cols=25 Identities=28% Similarity=0.199 Sum_probs=22.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 171 DVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 171 ~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
.+++|+|++|+|||||.+.+..-..
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~ 54 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALI 54 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCC
Confidence 8999999999999999999987643
No 338
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.47 E-value=0.018 Score=45.93 Aligned_cols=38 Identities=18% Similarity=0.323 Sum_probs=28.0
Q ss_pred HHHHHHHhCC-CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 158 LNDALDALSN-PNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 158 ~~~l~~~l~~-~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
+..+..++.. +....+.|+|++|+||||+|..+.+...
T Consensus 45 ~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 45 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4455555543 2334799999999999999999988753
No 339
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.46 E-value=0.0089 Score=44.67 Aligned_cols=22 Identities=27% Similarity=0.567 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 045699 172 VIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 172 vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
.|.++|.+|+|||||...+.+.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4889999999999999999865
No 340
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.46 E-value=0.059 Score=43.42 Aligned_cols=50 Identities=22% Similarity=0.314 Sum_probs=32.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHH
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDV 221 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 221 (266)
...++-|.|.+|+|||+||..+..+... ..-..++|++... +...+...+
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~-~~~~~v~~~s~E~--~~~~~~~~~ 78 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAE-EYGEPGVFVTLEE--RARDLRREM 78 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHH-HHCCCEEEEESSS--CHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHH-hcCCCceeecccC--CHHHHHHHH
Confidence 4578999999999999999886543211 1223566666553 345555443
No 341
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=95.44 E-value=0.015 Score=49.22 Aligned_cols=32 Identities=22% Similarity=0.352 Sum_probs=25.7
Q ss_pred HHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 159 NDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 159 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
++|.+.+. -.+++++|++|+|||||.+.+. ..
T Consensus 157 ~~L~~~l~---G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 157 DELVDYLE---GFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp HHHHHHTT---TCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred HHHHhhcc---CcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 45555553 4689999999999999999998 53
No 342
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.43 E-value=0.011 Score=51.01 Aligned_cols=28 Identities=25% Similarity=0.388 Sum_probs=24.4
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 167 NPNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 167 ~~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
-....+++|+|++|+|||||.+.+..-.
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 3567899999999999999999998653
No 343
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=95.43 E-value=0.007 Score=51.25 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 045699 172 VIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 172 vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
-|+|+|.+|+|||||.+.++..
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3499999999999999998753
No 344
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=95.42 E-value=0.0087 Score=53.47 Aligned_cols=31 Identities=23% Similarity=0.389 Sum_probs=26.2
Q ss_pred hCCCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 165 LSNPNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 165 l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
+.-..-.+++|+|++|+|||||++.+.+...
T Consensus 152 l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 152 LTVGRGQRMGLFAGSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp SCCBTTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 3335678999999999999999999999754
No 345
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=95.42 E-value=0.068 Score=54.12 Aligned_cols=92 Identities=21% Similarity=0.318 Sum_probs=0.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEE------------------EeCCCC-----------------
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFV------------------EVSRTP----------------- 212 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv------------------~v~~~~----------------- 212 (266)
+.-.+++|+|++|+|||||++.+..-. ......+.+ .|+|++
T Consensus 414 ~~G~~~~ivG~sGsGKSTl~~ll~g~~---~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~ 490 (1284)
T 3g5u_A 414 KSGQTVALVGNSGCGKSTTVQLMQRLY---DPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGRED 490 (1284)
T ss_dssp CTTCEEEEECCSSSSHHHHHHHTTTSS---CCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCCC
Q ss_pred -CHHHHHHHHHHH----------------hcCCCCCCCHHHHHHH-HHHHHhcCCeEEEEEeCCCCCCC
Q 045699 213 -DVKRIQGDVADQ----------------LSLNICEGSESERAMM-LCGQLKKGKKILFVLDNIWTSLD 263 (266)
Q Consensus 213 -~~~~~~~~i~~~----------------~~~~~~~~~~~~~~~~-l~~~L~~~kr~LlvlDDvw~~~~ 263 (266)
+..++...+-.. ++..-...|..+.+.. |.+.|-. +.=+++|||..+..|
T Consensus 491 ~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~-~p~iliLDEpts~LD 558 (1284)
T 3g5u_A 491 VTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVR-NPKILLLDEATSALD 558 (1284)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHH-CCSEEEEESTTCSSC
T ss_pred CCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhc-CCCEEEEECCCCCCC
No 346
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.41 E-value=0.11 Score=46.37 Aligned_cols=51 Identities=14% Similarity=0.061 Sum_probs=35.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVA 222 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~ 222 (266)
....++.|.|.+|+||||||..+......+ -..++|++...+ ..++...++
T Consensus 195 ~~G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlEms--~~ql~~R~~ 245 (444)
T 3bgw_A 195 KRRNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLEMG--KKENIKRLI 245 (444)
T ss_dssp CSSCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSSSC--TTHHHHHHH
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECCCC--HHHHHHHHH
Confidence 345789999999999999999998776433 235777765543 334444443
No 347
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.39 E-value=0.0093 Score=52.89 Aligned_cols=27 Identities=33% Similarity=0.436 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
....+|.|+|+.|+||||+|+.+....
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 456899999999999999999998754
No 348
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.38 E-value=0.036 Score=45.20 Aligned_cols=37 Identities=22% Similarity=0.368 Sum_probs=28.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEE
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVE 207 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~ 207 (266)
...|.|.|+.|+||||+++.+...... ..+.......
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~-~~~~~~~~~r 63 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQ-NGIDHITRTR 63 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHH-TTCCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh-cCCCeeeeec
Confidence 578999999999999999999988753 3455344443
No 349
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.36 E-value=0.01 Score=44.60 Aligned_cols=24 Identities=21% Similarity=0.473 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
.-.|.|+|.+|+|||||...+.+.
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 346889999999999999999875
No 350
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.35 E-value=0.0062 Score=52.34 Aligned_cols=27 Identities=30% Similarity=0.340 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
....++|+|++|+|||||++.+..-..
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 346899999999999999999987643
No 351
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.32 E-value=0.14 Score=46.44 Aligned_cols=51 Identities=16% Similarity=0.134 Sum_probs=36.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVA 222 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~ 222 (266)
...++.|.|.+|+||||||..+......+ +-..++|++...+ ..++...++
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~E~s--~~~l~~r~~ 291 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAMLEES--VEETAEDLI 291 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEESSSC--HHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEeccCC--HHHHHHHHH
Confidence 45789999999999999999998776432 1236777776543 456655543
No 352
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.32 E-value=0.012 Score=50.09 Aligned_cols=25 Identities=16% Similarity=0.404 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
..+|.|+|+.|+||||||..+....
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3589999999999999999998754
No 353
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.30 E-value=0.012 Score=44.42 Aligned_cols=24 Identities=21% Similarity=0.267 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
..+..|+|++|+||||+...++--
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~ 46 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVG 46 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 468899999999999999998643
No 354
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=95.26 E-value=0.0073 Score=47.65 Aligned_cols=27 Identities=15% Similarity=0.239 Sum_probs=22.6
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699 167 NPNVDVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 167 ~~~~~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
......++|+|.+|+|||||.+.+...
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 345678999999999999999988654
No 355
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.25 E-value=0.0076 Score=53.51 Aligned_cols=26 Identities=27% Similarity=0.317 Sum_probs=21.7
Q ss_pred CCCcE--EEEEcCCCCcHHHHHHHHHHH
Q 045699 168 PNVDV--IGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 168 ~~~~v--i~I~G~~G~GKTtLa~~v~~~ 193 (266)
....+ ++|+|.+|+|||||.+.++..
T Consensus 38 ~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 38 SQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp C-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred cCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 34456 999999999999999999764
No 356
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.24 E-value=0.016 Score=49.28 Aligned_cols=26 Identities=31% Similarity=0.151 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
...+|.|+|+.|+||||||..+....
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC
Confidence 35789999999999999999998764
No 357
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.23 E-value=0.018 Score=44.45 Aligned_cols=26 Identities=35% Similarity=0.345 Sum_probs=22.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
.....|.|+|.+|+|||||.+.+.+.
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 45678999999999999999998765
No 358
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.22 E-value=0.012 Score=45.54 Aligned_cols=24 Identities=25% Similarity=0.470 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 171 DVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 171 ~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
-.|.++|.+|+|||||+..+.+..
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468899999999999999998763
No 359
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.22 E-value=0.015 Score=45.01 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
....|.|+|..|+|||||...+.+.
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999999775
No 360
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.19 E-value=0.013 Score=43.98 Aligned_cols=24 Identities=25% Similarity=0.443 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 171 DVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 171 ~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
.-|.|+|..|+|||||...+.+..
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 468899999999999999998753
No 361
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=95.18 E-value=0.015 Score=49.10 Aligned_cols=29 Identities=28% Similarity=0.423 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 167 NPNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 167 ~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
....++|+|+|-||+||||+|-.+.....
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~~La 66 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSAAFS 66 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cCCceEEEEECCCCccHHHHHHHHHHHHH
Confidence 34678999999999999999999987765
No 362
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=95.18 E-value=0.048 Score=43.67 Aligned_cols=27 Identities=30% Similarity=0.455 Sum_probs=23.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcc
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQAKK 196 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~~~~ 196 (266)
...|.+-|+.|+||||+++.+......
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~~ 29 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLEQ 29 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 357899999999999999999988763
No 363
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.17 E-value=0.036 Score=44.74 Aligned_cols=29 Identities=28% Similarity=0.480 Sum_probs=25.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhcc
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKK 196 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 196 (266)
.....|.|.|+.|+||||+++.+.+....
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 45678999999999999999999988764
No 364
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.17 E-value=0.015 Score=47.29 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
...|.|.|..|+||||+++.+....
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4579999999999999999999875
No 365
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.16 E-value=0.055 Score=43.30 Aligned_cols=32 Identities=19% Similarity=0.200 Sum_probs=25.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhccccCCCe
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDE 202 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~ 202 (266)
...|.|-|+.|+||||+++.+....... .+..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~-~~~v 37 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRER-GIEV 37 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTT-TCCE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHc-CCCc
Confidence 4688999999999999999999887532 3444
No 366
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=95.16 E-value=0.011 Score=45.29 Aligned_cols=24 Identities=17% Similarity=0.241 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
...|+|+|.+|+|||||.+.+...
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 356899999999999999999865
No 367
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.16 E-value=0.012 Score=50.63 Aligned_cols=26 Identities=23% Similarity=0.342 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
...+|.|+|+.|+|||||+..+....
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 34689999999999999999998764
No 368
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.14 E-value=0.013 Score=45.37 Aligned_cols=24 Identities=33% Similarity=0.191 Sum_probs=20.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
.--|.|+|..|+|||||.+.+.+.
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~ 37 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSK 37 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHHhh
Confidence 356899999999999999888765
No 369
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.14 E-value=0.012 Score=54.76 Aligned_cols=94 Identities=23% Similarity=0.268 Sum_probs=56.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccc-cC-----------CC---------------eEEEEEeCCCC---------
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKL-KV-----------CD---------------EVVFVEVSRTP--------- 212 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~-~~-----------f~---------------~~~wv~v~~~~--------- 212 (266)
.-.+++|+|++|+|||||++.+....... +. |. ..+. .+.+..
T Consensus 116 ~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~-~~~q~~~~~~~~~~~ 194 (607)
T 3bk7_A 116 DGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPV-VKPQYVDLLPKAVKG 194 (607)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCE-EECSCGGGGGGTCCS
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhhhhcceE-Eeechhhhchhhccc
Confidence 45799999999999999999997643211 00 10 0010 111211
Q ss_pred CHHH---------HHHHHHHHhcCC------CCCCCHHHHH-HHHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699 213 DVKR---------IQGDVADQLSLN------ICEGSESERA-MMLCGQLKKGKKILFVLDNIWTSLDL 264 (266)
Q Consensus 213 ~~~~---------~~~~i~~~~~~~------~~~~~~~~~~-~~l~~~L~~~kr~LlvlDDvw~~~~~ 264 (266)
+..+ -..++++.++.. ....|..+.+ -.|...|-. +.=+|+||+..+.+|.
T Consensus 195 tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~-~P~lLlLDEPTs~LD~ 261 (607)
T 3bk7_A 195 KVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLR-KAHFYFFDEPSSYLDI 261 (607)
T ss_dssp BHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHS-CCSEEEEECTTTTCCH
T ss_pred cHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhc-CCCEEEEECCcccCCH
Confidence 1111 234566776652 2345654443 456777777 7889999999998874
No 370
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.12 E-value=0.014 Score=43.88 Aligned_cols=22 Identities=27% Similarity=0.499 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 045699 172 VIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 172 vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
-|.|+|..|+|||||.+.+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5889999999999999999875
No 371
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=95.09 E-value=0.026 Score=51.45 Aligned_cols=94 Identities=15% Similarity=0.186 Sum_probs=56.8
Q ss_pred HHHhCC-CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCC-CHHHHHHHHHH----HhcC--------
Q 045699 162 LDALSN-PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTP-DVKRIQGDVAD----QLSL-------- 227 (266)
Q Consensus 162 ~~~l~~-~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~i~~----~~~~-------- 227 (266)
++.|.. .+-..++|+|..|+|||+|+..+.+.. +-+.++++-+.+.. ...++.+++-+ ..+.
T Consensus 212 ID~l~PigrGqr~~Ifg~~g~GKT~l~~~ia~~~----~~~v~V~~~iGER~~Ev~e~~~~~~el~d~~~G~~~~~rtvv 287 (578)
T 3gqb_A 212 LDVLFPVAMGGTAAIPGPFGSGKSVTQQSLAKWS----NADVVVYVGSGERGNEMTDVLVEFPELTDPKTGGPLMHRTVL 287 (578)
T ss_dssp HHTTSCEETTCEEEECCCTTSCHHHHHHHHHHHS----SCSEEEEEEEEECHHHHHHHHTTGGGCBCTTTSSBSGGGEEE
T ss_pred hhhcccccCCCEEeeeCCCCccHHHHHHHHHhcc----CCCEEEEEEecccHHHHHHHHHHHHhhcccccccccccceEE
Confidence 444432 356889999999999999999998764 34678888888663 23333333211 1111
Q ss_pred --CCCCCCHH-H-----HHHHHHHHHhc-CCeEEEEEeCCC
Q 045699 228 --NICEGSES-E-----RAMMLCGQLKK-GKKILFVLDNIW 259 (266)
Q Consensus 228 --~~~~~~~~-~-----~~~~l~~~L~~-~kr~LlvlDDvw 259 (266)
...+.+.. . ....+.+++++ |+..||++|++.
T Consensus 288 v~~tsd~p~~~R~~~~~~altiAEyfrd~G~dVLl~~Ds~t 328 (578)
T 3gqb_A 288 IANTSNMPVAAREASIYVGVTIAEYFRDQGFSVALMADSTS 328 (578)
T ss_dssp EEEETTSCHHHHHHHHHHHHHHHHHHHHTTCEEEECCSCHH
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecChH
Confidence 11122211 1 12334556654 699999999864
No 372
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.08 E-value=0.015 Score=43.57 Aligned_cols=22 Identities=27% Similarity=0.226 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 045699 172 VIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 172 vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
-|.|+|..|+|||||...+.+.
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999765
No 373
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.08 E-value=0.011 Score=54.32 Aligned_cols=27 Identities=26% Similarity=0.370 Sum_probs=24.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
...++.|+|++|+|||||++.+.....
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhc
Confidence 457999999999999999999998764
No 374
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=95.06 E-value=0.022 Score=48.17 Aligned_cols=33 Identities=18% Similarity=0.386 Sum_probs=25.9
Q ss_pred HHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 159 NDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 159 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
+++..++. -.+++|+|++|+|||||.+.+....
T Consensus 161 ~~lf~~l~---geiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 161 EELKEYLK---GKISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp HHHHHHHS---SSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred HHHHHHhc---CCeEEEECCCCCcHHHHHHHhcccc
Confidence 44555553 4689999999999999999997643
No 375
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.05 E-value=0.019 Score=43.94 Aligned_cols=33 Identities=27% Similarity=0.208 Sum_probs=25.0
Q ss_pred HHHHhCC-CCCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699 161 ALDALSN-PNVDVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 161 l~~~l~~-~~~~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
+.+.+.. .....|.|+|..|+|||||...+.+.
T Consensus 8 ~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~ 41 (183)
T 1moz_A 8 MFDKLWGSNKELRILILGLDGAGKTTILYRLQIG 41 (183)
T ss_dssp HHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred HHHHhcCCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 3343333 56678999999999999999988643
No 376
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.05 E-value=0.015 Score=43.91 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 045699 171 DVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 171 ~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
-.|.|+|..|+|||||...+.+.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999865
No 377
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.04 E-value=0.016 Score=50.13 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
...+|+|+|.+|+|||||...+....
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999998753
No 378
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.04 E-value=0.012 Score=44.66 Aligned_cols=24 Identities=33% Similarity=0.506 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
.--|.|+|..|+|||||.+.+.+.
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 346899999999999999998764
No 379
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.03 E-value=0.015 Score=43.73 Aligned_cols=23 Identities=17% Similarity=0.310 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 045699 172 VIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 172 vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
-|.|+|..|+|||||...+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999987653
No 380
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.02 E-value=0.013 Score=44.15 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 045699 171 DVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 171 ~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
-.|.|+|..|+|||||...+.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35889999999999999999864
No 381
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.02 E-value=0.015 Score=43.51 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 045699 171 DVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 171 ~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
-.|.|+|..|+|||||...+.+.
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999988765
No 382
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.01 E-value=0.017 Score=43.96 Aligned_cols=26 Identities=27% Similarity=0.291 Sum_probs=22.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
.+...|.|+|..|+|||||...+.+.
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34678999999999999999999764
No 383
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.01 E-value=0.015 Score=43.74 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 171 DVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 171 ~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
-.|.|+|..|+|||||.+.+.+..
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468999999999999999998763
No 384
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.00 E-value=0.014 Score=54.12 Aligned_cols=27 Identities=30% Similarity=0.495 Sum_probs=23.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
+...+++|+|++|+|||||++.+..-.
T Consensus 367 ~~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456899999999999999999997653
No 385
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=95.00 E-value=0.014 Score=54.13 Aligned_cols=27 Identities=30% Similarity=0.511 Sum_probs=23.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
+...+++|+|++|+|||||++.+..-.
T Consensus 367 ~~G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 367 PAGKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp CTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 456799999999999999999997653
No 386
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.00 E-value=0.015 Score=44.31 Aligned_cols=25 Identities=28% Similarity=0.430 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
....|.|+|..|+|||||...+.+.
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3457899999999999999998775
No 387
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=94.99 E-value=0.017 Score=45.54 Aligned_cols=28 Identities=21% Similarity=0.153 Sum_probs=21.3
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699 166 SNPNVDVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 166 ~~~~~~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
...+.-.|.|+|..|+|||||...+.+.
T Consensus 26 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 26 FQGQAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp ----CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred hcCCeEEEEEECcCCCCHHHHHHHHHhC
Confidence 3345567899999999999999888765
No 388
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.97 E-value=0.019 Score=45.44 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=23.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
.....|.|+|..|+|||||...+.+..
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 346789999999999999999998764
No 389
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.97 E-value=0.018 Score=44.60 Aligned_cols=26 Identities=19% Similarity=0.423 Sum_probs=22.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
.....|.|+|..|+|||||...+.+.
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35678999999999999999999765
No 390
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=94.96 E-value=0.015 Score=50.53 Aligned_cols=26 Identities=19% Similarity=0.334 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
-.+++|+|++|+|||||.+.+.....
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CCEEEEECCCCccHHHHHHHHhcccc
Confidence 36899999999999999999986543
No 391
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=94.93 E-value=0.016 Score=44.71 Aligned_cols=24 Identities=25% Similarity=0.270 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
..-|.|+|.+|+|||||.+.+.+.
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 356889999999999999999875
No 392
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.93 E-value=0.016 Score=44.14 Aligned_cols=25 Identities=24% Similarity=0.442 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
....|.|+|..|+|||||...+.+.
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3457899999999999999999876
No 393
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=94.91 E-value=0.025 Score=44.37 Aligned_cols=32 Identities=28% Similarity=0.385 Sum_probs=23.7
Q ss_pred HHHHhC-CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 045699 161 ALDALS-NPNVDVIGLCGVGGIGKTTLAKIVCD 192 (266)
Q Consensus 161 l~~~l~-~~~~~vi~I~G~~G~GKTtLa~~v~~ 192 (266)
+++.+. ..+...|+|+|.+|+|||||.+.+.+
T Consensus 15 ~l~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 15 VLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp HHHHHTCTTCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHhhccCCCcEEEEECCCCCCHHHHHHHHhc
Confidence 344442 33445689999999999999999865
No 394
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.91 E-value=0.027 Score=43.39 Aligned_cols=33 Identities=21% Similarity=0.195 Sum_probs=25.7
Q ss_pred HHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699 160 DALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 160 ~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
.+.+ +.......|.|+|..|+|||||...+.+.
T Consensus 7 ~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 7 RIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp HHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred HHHH-hcCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 3444 33455678999999999999999999854
No 395
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.90 E-value=0.017 Score=43.95 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
.--|.|+|..|+|||||...+.+.
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 346899999999999999999765
No 396
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=94.90 E-value=0.017 Score=44.80 Aligned_cols=24 Identities=21% Similarity=0.198 Sum_probs=20.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
.--|.|+|.+|+|||||...+.+.
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 457899999999999999877665
No 397
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=94.89 E-value=0.018 Score=44.43 Aligned_cols=26 Identities=15% Similarity=0.354 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
....|.|+|..|+|||||...+.+..
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCc
Confidence 45678999999999999999998763
No 398
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=94.88 E-value=0.015 Score=43.73 Aligned_cols=22 Identities=36% Similarity=0.527 Sum_probs=19.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 045699 171 DVIGLCGVGGIGKTTLAKIVCD 192 (266)
Q Consensus 171 ~vi~I~G~~G~GKTtLa~~v~~ 192 (266)
--|.|+|..|+|||||.+.+.+
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEEECCCCCCHHHHHHHHcC
Confidence 3588999999999999998854
No 399
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=94.88 E-value=0.017 Score=43.34 Aligned_cols=23 Identities=22% Similarity=0.241 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 045699 171 DVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 171 ~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
--|.|+|..|+|||||...+.+.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 45889999999999999999864
No 400
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.88 E-value=0.017 Score=43.45 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 045699 171 DVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 171 ~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
--|.|+|..|+|||||...+.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 45899999999999999998765
No 401
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=94.86 E-value=0.036 Score=54.08 Aligned_cols=22 Identities=18% Similarity=0.048 Sum_probs=20.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHH
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIV 190 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v 190 (266)
...+++|.|++|+||||+.+.+
T Consensus 661 ~g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 661 KQMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp TBCEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 4579999999999999999998
No 402
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.84 E-value=0.017 Score=43.97 Aligned_cols=24 Identities=29% Similarity=0.327 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
.--|.|+|..|+|||||...+.+.
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 346889999999999999998764
No 403
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=94.83 E-value=0.016 Score=43.69 Aligned_cols=22 Identities=36% Similarity=0.439 Sum_probs=19.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 045699 171 DVIGLCGVGGIGKTTLAKIVCD 192 (266)
Q Consensus 171 ~vi~I~G~~G~GKTtLa~~v~~ 192 (266)
--|.|+|..|+|||||...+.+
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 3588999999999999999853
No 404
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=94.80 E-value=0.018 Score=43.66 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
...|.|+|..|+|||||...+.+..
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 4578999999999999999998764
No 405
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.80 E-value=0.018 Score=45.91 Aligned_cols=24 Identities=38% Similarity=0.404 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 171 DVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 171 ~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
.+|+|.|+.|+||||+++.+....
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 479999999999999999997754
No 406
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=94.80 E-value=0.018 Score=44.84 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=20.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
+...|.|+|.+|+|||||.+.+.+.
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3457899999999999999999874
No 407
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=94.77 E-value=0.019 Score=43.26 Aligned_cols=24 Identities=29% Similarity=0.220 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
...|.|+|..|+|||||...+.+.
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 456899999999999999999764
No 408
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=94.76 E-value=0.021 Score=49.19 Aligned_cols=28 Identities=25% Similarity=0.278 Sum_probs=24.1
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 167 NPNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 167 ~~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
.....+++|+|.+|+|||||+..+....
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4567899999999999999999997654
No 409
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=94.75 E-value=0.019 Score=44.07 Aligned_cols=24 Identities=21% Similarity=0.380 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 171 DVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 171 ~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
--|.|+|..|+|||||...+.+..
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 358899999999999999998753
No 410
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=94.75 E-value=0.023 Score=46.81 Aligned_cols=25 Identities=28% Similarity=0.510 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 171 DVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 171 ~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
++|+|.|-||+||||+|..+.....
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la 26 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLH 26 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHH
Confidence 5788899999999999999988765
No 411
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=94.72 E-value=0.02 Score=43.90 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
.-.|.|+|..|+|||||...+.+.
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457899999999999999999875
No 412
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=94.70 E-value=0.02 Score=44.07 Aligned_cols=24 Identities=25% Similarity=0.231 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
.-.|.|+|..|+|||||...+.+.
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 357899999999999999999875
No 413
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=94.70 E-value=0.02 Score=44.39 Aligned_cols=24 Identities=33% Similarity=0.390 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
.--|.|+|..|+|||||...+.+.
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999998875
No 414
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=94.69 E-value=0.02 Score=43.95 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
.-.|.|+|..|+|||||.+.+.+..
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 3578999999999999999998653
No 415
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.68 E-value=0.021 Score=50.28 Aligned_cols=24 Identities=29% Similarity=0.527 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 171 DVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 171 ~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
.+|.|.|+.|+||||||..+....
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 578999999999999999998764
No 416
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=94.67 E-value=0.02 Score=44.32 Aligned_cols=26 Identities=19% Similarity=0.209 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
..--|.|+|..|+|||||...+.+..
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhCC
Confidence 34578999999999999998887653
No 417
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=94.65 E-value=0.021 Score=43.68 Aligned_cols=25 Identities=24% Similarity=0.449 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
...|.|+|..|+|||||...+.+..
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCC
Confidence 4568999999999999999998753
No 418
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.64 E-value=0.022 Score=44.18 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
.--|.|+|..|+|||||...+.+..
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eeEEEEECCCCcCHHHHHHHHhcCC
Confidence 4578999999999999999998764
No 419
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=94.63 E-value=0.019 Score=43.71 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=21.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
..-.|.|+|..|+|||||...+.+.
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcC
Confidence 3457899999999999999998654
No 420
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=94.63 E-value=0.017 Score=44.47 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 045699 172 VIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 172 vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
.|.|+|.+|+|||||...+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 5789999999999999998775
No 421
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.62 E-value=0.021 Score=43.29 Aligned_cols=23 Identities=22% Similarity=0.190 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 045699 171 DVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 171 ~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
-.|.|+|..|+|||||...+.+.
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46889999999999999999765
No 422
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=94.61 E-value=0.022 Score=43.60 Aligned_cols=23 Identities=26% Similarity=0.228 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 045699 171 DVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 171 ~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
--|.|+|..|+|||||...+.+.
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35889999999999999998765
No 423
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.60 E-value=0.014 Score=51.73 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 045699 173 IGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 173 i~I~G~~G~GKTtLa~~v~~~ 193 (266)
|+|+|.+|+|||||.+.++..
T Consensus 34 I~lvG~sGaGKSTLln~L~g~ 54 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLT 54 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTC
T ss_pred EEEECCCCCcHHHHHHHHhCC
Confidence 599999999999999999865
No 424
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.59 E-value=0.026 Score=43.90 Aligned_cols=26 Identities=19% Similarity=0.331 Sum_probs=22.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
....-|.|+|..|+|||||...+.+.
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 34567899999999999999999875
No 425
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=94.59 E-value=0.014 Score=54.30 Aligned_cols=27 Identities=30% Similarity=0.452 Sum_probs=23.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
+...+++|+|++|+|||||++.+..-.
T Consensus 368 ~~G~~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 368 PSGSVTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp CTTCEEEEECCTTSSSTHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 456799999999999999999997653
No 426
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=94.58 E-value=0.022 Score=43.38 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 045699 171 DVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 171 ~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
..|.|+|..|+|||||...+.+.
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999998765
No 427
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=94.57 E-value=0.023 Score=43.40 Aligned_cols=25 Identities=24% Similarity=0.181 Sum_probs=21.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
..--|.|+|..|+|||||...+.+.
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 3456889999999999999998765
No 428
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.54 E-value=0.015 Score=51.80 Aligned_cols=26 Identities=38% Similarity=0.457 Sum_probs=22.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
..+|.|+|.+|+||||++..+.....
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 56899999999999999999887654
No 429
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=94.54 E-value=0.023 Score=44.40 Aligned_cols=25 Identities=24% Similarity=0.445 Sum_probs=21.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
....|.|+|..|+|||||...+.+.
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3457899999999999999998765
No 430
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=94.53 E-value=0.023 Score=43.44 Aligned_cols=24 Identities=21% Similarity=0.362 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
...|.|+|..|+|||||...+.+.
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 457899999999999999999865
No 431
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.53 E-value=0.023 Score=43.22 Aligned_cols=25 Identities=36% Similarity=0.337 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
.-.|.|+|..|+|||||...+.+..
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC
Confidence 3468999999999999999987653
No 432
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=94.52 E-value=0.013 Score=54.25 Aligned_cols=27 Identities=22% Similarity=0.390 Sum_probs=23.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
+....++|+|++|+|||||++.+..-.
T Consensus 365 ~~G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 365 EKGETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp CTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 456899999999999999999986643
No 433
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=94.51 E-value=0.023 Score=44.46 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
....|.|+|..|+|||||...+.+..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC
Confidence 34578999999999999999997753
No 434
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=94.50 E-value=0.017 Score=44.02 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 045699 171 DVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 171 ~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
--|.++|.+|+|||||...+.+.
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45889999999999999998775
No 435
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=94.49 E-value=0.019 Score=44.77 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=21.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
...-|.|+|.+|+|||||.+.+.+.
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhc
Confidence 4567899999999999999987764
No 436
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=94.49 E-value=0.024 Score=43.96 Aligned_cols=25 Identities=16% Similarity=0.222 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
..-.|.|+|..|+|||||...+.+.
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456899999999999999999876
No 437
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.49 E-value=0.018 Score=52.51 Aligned_cols=25 Identities=20% Similarity=-0.001 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
...++|+|+.|+|||||++.+..-.
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4569999999999999999997764
No 438
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.48 E-value=0.016 Score=53.91 Aligned_cols=27 Identities=26% Similarity=0.342 Sum_probs=23.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
+...+++|+|++|+|||||++.+..-.
T Consensus 379 ~~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 379 KPGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp CTTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 456899999999999999999997653
No 439
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=94.47 E-value=0.021 Score=48.23 Aligned_cols=25 Identities=28% Similarity=0.414 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
+...|+|+|.+|+|||||...+...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3468999999999999999999875
No 440
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=94.47 E-value=0.022 Score=44.37 Aligned_cols=27 Identities=22% Similarity=0.137 Sum_probs=22.5
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699 167 NPNVDVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 167 ~~~~~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
......|.|+|..|+|||||...+.+.
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSS
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhC
Confidence 345567999999999999999998653
No 441
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=94.46 E-value=0.024 Score=44.04 Aligned_cols=25 Identities=20% Similarity=0.267 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
.-.|.|+|..|+|||||...+.+..
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4578999999999999999998753
No 442
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=94.45 E-value=0.024 Score=44.37 Aligned_cols=26 Identities=23% Similarity=0.317 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
....|.|+|..|+|||||...+.+..
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCC
Confidence 45678999999999999999998753
No 443
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=94.44 E-value=0.03 Score=46.77 Aligned_cols=26 Identities=27% Similarity=0.451 Sum_probs=22.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
.++|+|.|-||+||||+|..+.....
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La 27 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALA 27 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHH
Confidence 46889999999999999999987765
No 444
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=94.44 E-value=0.018 Score=45.12 Aligned_cols=23 Identities=35% Similarity=0.469 Sum_probs=20.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHH
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVC 191 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~ 191 (266)
....|.|+|.+|+|||||.+.+.
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTC
T ss_pred cEEEEEEECCCCCCHHHHHHHHH
Confidence 34678999999999999999984
No 445
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.43 E-value=0.02 Score=52.24 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=20.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHH
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIV 190 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v 190 (266)
..-.+++|+|++|+|||||++.+
T Consensus 37 ~~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 37 PIGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHH
Confidence 35689999999999999999995
No 446
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=94.43 E-value=0.024 Score=46.96 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
...|+++|.+|+|||||...+...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999999765
No 447
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.42 E-value=0.053 Score=43.90 Aligned_cols=27 Identities=33% Similarity=0.551 Sum_probs=21.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
....|.|-|+.|+||||+++.+.+...
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 356899999999999999999998875
No 448
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=94.41 E-value=0.027 Score=43.93 Aligned_cols=23 Identities=39% Similarity=0.521 Sum_probs=20.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHH
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCD 192 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~ 192 (266)
..-|.|+|.+|+|||||...+.+
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999998875
No 449
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=94.41 E-value=0.014 Score=54.28 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 045699 172 VIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 172 vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
.+.++|+.|+|||+||+.+.+..
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTC
T ss_pred ceEEECCCchHHHHHHHHHHHhC
Confidence 68999999999999999998764
No 450
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.40 E-value=0.013 Score=48.31 Aligned_cols=26 Identities=23% Similarity=0.328 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
+...|.|.|..|+||||+++.+....
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 46799999999999999999987764
No 451
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.40 E-value=0.025 Score=44.59 Aligned_cols=24 Identities=33% Similarity=0.411 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
..-|.|+|..|+|||||.+.+.+.
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 457899999999999999998765
No 452
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.39 E-value=0.025 Score=43.89 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
...-|.|+|..|+|||||...+.+.
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcC
Confidence 3457899999999999999999774
No 453
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=94.38 E-value=0.025 Score=44.68 Aligned_cols=25 Identities=24% Similarity=0.230 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
...-|.|+|..|+|||||.+.+.+.
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3467899999999999999999875
No 454
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=94.38 E-value=0.026 Score=43.67 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
.-.|.|+|..|+|||||...+.+..
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 4578999999999999999998753
No 455
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=94.38 E-value=0.022 Score=46.13 Aligned_cols=25 Identities=24% Similarity=0.282 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
....|+|+|..|+|||||...+...
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHcCC
Confidence 4568999999999999999999875
No 456
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=94.37 E-value=0.042 Score=49.92 Aligned_cols=42 Identities=7% Similarity=-0.083 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHhC--CCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 154 RKSILNDALDALS--NPNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 154 r~~~~~~l~~~l~--~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
+.+..+.+.+... .++..+|.+.|+.|+||||+|+.+.....
T Consensus 377 rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 377 YPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp CHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred ChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHH
Confidence 3333444555442 23567899999999999999999999875
No 457
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=94.37 E-value=0.026 Score=43.60 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
.-.|.|+|..|+|||||...+.+.
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 456889999999999999999865
No 458
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=94.36 E-value=0.026 Score=44.54 Aligned_cols=26 Identities=19% Similarity=0.160 Sum_probs=21.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
....|.|+|.+|+|||||...+.+..
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34678999999999999999998753
No 459
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=94.35 E-value=0.027 Score=43.66 Aligned_cols=24 Identities=25% Similarity=0.277 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
.--|.|+|..|+|||||...+.+.
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 346889999999999999999765
No 460
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=94.33 E-value=0.028 Score=48.30 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=20.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHH
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCD 192 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~ 192 (266)
..+..|+|++|+|||||...|+-
T Consensus 23 ~~~~~i~G~NGsGKS~lleAi~~ 45 (339)
T 3qkt_A 23 EGINLIIGQNGSGKSSLLDAILV 45 (339)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 47889999999999999998854
No 461
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=94.33 E-value=0.027 Score=43.68 Aligned_cols=25 Identities=28% Similarity=0.298 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
.--|.|+|..|+|||||...+.+..
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCC
Confidence 4578999999999999999998763
No 462
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=94.32 E-value=0.027 Score=43.46 Aligned_cols=25 Identities=24% Similarity=0.268 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
..-|.|+|..|+|||||...+.+..
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCC
Confidence 4578999999999999999998763
No 463
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=94.32 E-value=0.028 Score=44.60 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=20.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHH
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCD 192 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~ 192 (266)
..+..|+|++|+||||+...++-
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHH
Confidence 46889999999999999998853
No 464
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=94.30 E-value=0.026 Score=49.06 Aligned_cols=22 Identities=36% Similarity=0.521 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 045699 171 DVIGLCGVGGIGKTTLAKIVCD 192 (266)
Q Consensus 171 ~vi~I~G~~G~GKTtLa~~v~~ 192 (266)
.+.+|+|++|+|||||...++.
T Consensus 27 g~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 27 GVTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCChhHHHHHHHH
Confidence 4999999999999999999985
No 465
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=94.30 E-value=0.011 Score=50.25 Aligned_cols=24 Identities=21% Similarity=0.434 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
-.+++|+|++|+|||||.+.+...
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC-
T ss_pred CCEEEEECCCCCCHHHHHHHhccc
Confidence 469999999999999999999654
No 466
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=94.29 E-value=0.025 Score=44.24 Aligned_cols=25 Identities=24% Similarity=0.268 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
..-|.|+|..|+|||||...+.+..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999987753
No 467
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=94.27 E-value=0.032 Score=44.20 Aligned_cols=26 Identities=19% Similarity=0.179 Sum_probs=23.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
..+|.|.|+.|+||||+++.+.....
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999988764
No 468
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=94.25 E-value=0.029 Score=43.34 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
....|.|+|..|+|||||...+.+.
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcC
Confidence 3467899999999999999998765
No 469
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=94.24 E-value=0.029 Score=43.82 Aligned_cols=26 Identities=23% Similarity=0.431 Sum_probs=21.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
....-|.|+|..|+|||||...+.+.
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhC
Confidence 34678999999999999999999765
No 470
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=94.24 E-value=0.0042 Score=50.48 Aligned_cols=24 Identities=29% Similarity=0.314 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 172 VIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 172 vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
+++|+|++|+|||||.+.+..-..
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g~~~ 52 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTALI 52 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcccc
Confidence 557899999999999999977643
No 471
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.23 E-value=0.019 Score=53.23 Aligned_cols=27 Identities=22% Similarity=0.345 Sum_probs=23.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
+.-.+++|+|++|+|||||++.+..-.
T Consensus 367 ~~Ge~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 367 KPGSLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp CTTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 456899999999999999999996643
No 472
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=94.23 E-value=0.029 Score=43.25 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 045699 171 DVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 171 ~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
..|.|+|..|+|||||...+.+.
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999875
No 473
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=94.21 E-value=0.024 Score=44.46 Aligned_cols=25 Identities=20% Similarity=0.223 Sum_probs=20.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
..--|.|+|..|+|||||.+.+.+.
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC-
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3457899999999999999998754
No 474
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=94.20 E-value=0.066 Score=44.40 Aligned_cols=38 Identities=21% Similarity=0.204 Sum_probs=29.9
Q ss_pred HHHHHHHHHhCCC--CCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699 156 SILNDALDALSNP--NVDVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 156 ~~~~~l~~~l~~~--~~~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
.....+..|+... ...-+.++|++|.|||++|..+.+.
T Consensus 88 ~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 88 YAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 3445677777643 3457999999999999999999885
No 475
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=94.19 E-value=0.024 Score=44.18 Aligned_cols=25 Identities=28% Similarity=0.260 Sum_probs=20.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
..--|.|+|..|+|||||...+.+.
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3557889999999999999988765
No 476
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=94.16 E-value=0.03 Score=43.90 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
...|.|+|..|+|||||...+.+.
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 356899999999999999999775
No 477
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=94.14 E-value=0.028 Score=49.88 Aligned_cols=24 Identities=17% Similarity=0.329 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
..+.+|+|++|+|||||...++--
T Consensus 26 ~~~~~i~G~nG~GKstll~ai~~~ 49 (430)
T 1w1w_A 26 SNFTSIIGPNGSGKSNMMDAISFV 49 (430)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 578999999999999999999764
No 478
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=94.12 E-value=0.034 Score=42.66 Aligned_cols=27 Identities=22% Similarity=0.212 Sum_probs=22.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
.....|.|+|..|+|||||...+.+..
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 456789999999999999999997654
No 479
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=94.08 E-value=0.038 Score=50.42 Aligned_cols=27 Identities=26% Similarity=0.313 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
...+|.++|+.|+||||+|+.+.....
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~ 60 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLN 60 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 457899999999999999999977653
No 480
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.07 E-value=0.032 Score=43.92 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
...|.|+|..|+|||||...+.+.
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcC
Confidence 357899999999999999999875
No 481
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=94.05 E-value=0.034 Score=48.33 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 045699 171 DVIGLCGVGGIGKTTLAKIVCD 192 (266)
Q Consensus 171 ~vi~I~G~~G~GKTtLa~~v~~ 192 (266)
.+..|+|++|+|||||...++-
T Consensus 24 g~~~i~G~NGaGKTTll~ai~~ 45 (365)
T 3qf7_A 24 GITVVEGPNGAGKSSLFEAISF 45 (365)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999999873
No 482
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.03 E-value=0.041 Score=44.51 Aligned_cols=25 Identities=20% Similarity=0.081 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 171 DVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 171 ~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
-.|.+.|.||+||||+|-.+.....
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~ 31 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQL 31 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHH
Confidence 3477889999999999988888765
No 483
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=94.03 E-value=0.032 Score=44.70 Aligned_cols=26 Identities=31% Similarity=0.535 Sum_probs=22.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699 168 PNVDVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 168 ~~~~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
.....|.|+|..|+|||||...+.+.
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34678999999999999999999765
No 484
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.02 E-value=0.033 Score=43.12 Aligned_cols=24 Identities=25% Similarity=0.295 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
..-|.|+|..|+|||||...+.+.
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 357899999999999999999876
No 485
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=94.01 E-value=0.027 Score=44.69 Aligned_cols=24 Identities=38% Similarity=0.509 Sum_probs=20.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
.--|.|+|..|+|||||...+.+.
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC-
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 457899999999999999999764
No 486
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=93.98 E-value=0.1 Score=45.04 Aligned_cols=31 Identities=32% Similarity=0.409 Sum_probs=25.1
Q ss_pred hCCCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 165 LSNPNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 165 l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
+.....+++.+.|.||+||||+|..+.....
T Consensus 13 l~~~~~~i~~~~gkGGvGKTt~a~~lA~~la 43 (348)
T 3io3_A 13 VQHDSLKWIFVGGKGGVGKTTTSSSVAVQLA 43 (348)
T ss_dssp HTCTTCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred hcCCCcEEEEEeCCCCCcHHHHHHHHHHHHH
Confidence 3455678999999999999999998876554
No 487
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.97 E-value=0.035 Score=43.59 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
...|.|+|..|+|||||...+.+.
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 467899999999999999998865
No 488
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=93.96 E-value=0.026 Score=43.32 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
...|.|+|..|+|||||...+.+.
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 457899999999999999999865
No 489
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.91 E-value=0.043 Score=42.78 Aligned_cols=24 Identities=21% Similarity=0.028 Sum_probs=19.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 171 DVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 171 ~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
.++.|+|+.|+||||++..+....
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 578899999999999985555443
No 490
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=93.89 E-value=0.1 Score=44.82 Aligned_cols=30 Identities=30% Similarity=0.329 Sum_probs=24.3
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699 166 SNPNVDVIGLCGVGGIGKTTLAKIVCDQAK 195 (266)
Q Consensus 166 ~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 195 (266)
.....+++.+.|-||+||||+|-.+.....
T Consensus 12 ~~~~~~i~~~sgkGGvGKTt~a~~lA~~la 41 (334)
T 3iqw_A 12 DQRSLRWIFVGGKGGVGKTTTSCSLAIQLA 41 (334)
T ss_dssp HCTTCCEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred cCCCeEEEEEeCCCCccHHHHHHHHHHHHH
Confidence 344567888889999999999999877654
No 491
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=93.89 E-value=0.036 Score=43.34 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
..-|.|+|..|+|||||...+.+.
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 356899999999999999999875
No 492
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=93.88 E-value=0.033 Score=43.18 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
....|.|+|..|+|||||...+.+.
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 4578999999999999999998664
No 493
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=93.87 E-value=0.036 Score=43.42 Aligned_cols=25 Identities=20% Similarity=0.173 Sum_probs=21.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
...-|.|+|..|+|||||...+.+.
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhhC
Confidence 3467899999999999999998764
No 494
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=93.86 E-value=0.023 Score=52.93 Aligned_cols=26 Identities=19% Similarity=0.311 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
.+..++|+|..|+|||||.+.+..-.
T Consensus 44 ~lp~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 44 ALPAIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CCCCEECCCCTTSCHHHHHHHHHSCC
T ss_pred cCCeEEEECCCCChHHHHHHHHhCCC
Confidence 46779999999999999999998753
No 495
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.86 E-value=0.029 Score=44.52 Aligned_cols=25 Identities=20% Similarity=0.221 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
-..|.|.|+.|+||||||..+....
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 4678999999999999999997764
No 496
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=93.84 E-value=0.02 Score=43.91 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=10.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
..-|.|+|..|+|||||...+.+.
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEECCCCC------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 356899999999999999988654
No 497
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=93.82 E-value=0.038 Score=43.51 Aligned_cols=24 Identities=21% Similarity=0.177 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
.--|.|+|..|+|||||...+.+.
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 456899999999999999998765
No 498
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=93.81 E-value=0.021 Score=55.78 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699 169 NVDVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 169 ~~~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
...+++|+|++|+|||||.+.+..-
T Consensus 698 ~GeivaIiGpNGSGKSTLLklLaGl 722 (986)
T 2iw3_A 698 LSSRIAVIGPNGAGKSTLINVLTGE 722 (986)
T ss_dssp TTCEEEECSCCCHHHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4579999999999999999999653
No 499
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=93.79 E-value=0.069 Score=47.55 Aligned_cols=43 Identities=16% Similarity=0.346 Sum_probs=30.7
Q ss_pred cchHHHHHHHHHHhC----C-------CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699 152 ESRKSILNDALDALS----N-------PNVDVIGLCGVGGIGKTTLAKIVCDQA 194 (266)
Q Consensus 152 ~gr~~~~~~l~~~l~----~-------~~~~vi~I~G~~G~GKTtLa~~v~~~~ 194 (266)
.|.++..+.+.+.+. . .....++|+|.+|+|||||.+.+....
T Consensus 151 ~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 151 INLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp BSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred CCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCCc
Confidence 345556666665542 1 123589999999999999999998753
No 500
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=93.79 E-value=0.035 Score=43.07 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=20.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 045699 170 VDVIGLCGVGGIGKTTLAKIVCDQ 193 (266)
Q Consensus 170 ~~vi~I~G~~G~GKTtLa~~v~~~ 193 (266)
.--|.|+|..|+|||||...+.+.
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC-
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 346889999999999999998754
Done!