Query 045701
Match_columns 653
No_of_seqs 126 out of 149
Neff 3.2
Searched_HMMs 46136
Date Fri Mar 29 04:39:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045701.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045701hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04833 COBRA: COBRA-like pro 100.0 2.2E-79 4.8E-84 581.3 17.8 167 232-412 1-169 (169)
2 PF00553 CBM_2: Cellulose bind 95.2 0.094 2E-06 46.4 7.8 53 219-272 2-54 (101)
3 PF04833 COBRA: COBRA-like pro 95.0 0.15 3.2E-06 50.5 9.3 106 74-189 1-143 (169)
4 PF00553 CBM_2: Cellulose bind 85.1 1.6 3.5E-05 38.6 4.9 40 72-111 13-52 (101)
5 smart00637 CBD_II CBD_II domai 71.0 6.2 0.00013 34.0 4.1 39 73-111 7-45 (92)
6 smart00637 CBD_II CBD_II domai 70.6 10 0.00022 32.8 5.3 43 229-272 5-47 (92)
7 PF10563 CdCA1: Cadmium carbon 40.6 6 0.00013 40.9 -1.3 18 492-509 5-22 (218)
8 PF03128 CXCXC: CXCXC repeat; 34.8 19 0.00041 22.7 0.7 8 436-443 7-14 (14)
9 PF03173 CHB_HEX: Putative car 23.0 1.2E+02 0.0025 30.1 4.2 88 70-172 28-117 (164)
10 PF07131 DUF1382: Protein of u 22.0 26 0.00056 30.1 -0.3 22 131-152 5-26 (61)
11 COG5341 Uncharacterized protei 20.9 81 0.0018 30.7 2.6 40 580-620 43-82 (132)
12 PF08140 Cuticle_1: Crustacean 20.2 74 0.0016 25.5 1.8 22 95-116 13-37 (40)
No 1
>PF04833 COBRA: COBRA-like protein; InterPro: IPR006918 In Arabidopsis thaliana (Mouse-ear cress) members of the family are all extracellular glycosyl-phosphatidyl inositol-anchored proteins (GPI-linked) []. The type example of the family is COBRA (Q94KT8 from SWISSPROT) and the family is generally annotated as COBRA-like (COBL). COBRA is involved in determining the orientation of cell expansion, probably by playing an important role in cellulose deposition. It may act by recruiting cellulose synthesizing complexes to discrete positions on the cell surface. Some members of this family are annotated as phytochelatin synthase, but these annotations are incorrect [].
Probab=100.00 E-value=2.2e-79 Score=581.25 Aligned_cols=167 Identities=44% Similarity=0.854 Sum_probs=158.9
Q ss_pred eEEEEEEecCCccCCCC--CCeeeeeEcCCeeeEEecCcEEeeecCCCcccCCCCcccccCCCCccccccCCCeeeeCCC
Q 045701 232 YLAQVTLENKSPLGRLD--HWNLTWEWMRGEFIYTMKGAYTRNIDYSGCLYGPAGTYYADMDFSKVMNCEKRPTISDLPR 309 (653)
Q Consensus 232 Y~A~VTi~N~q~yrhId--gW~L~W~W~k~E~IwsM~GA~~te~DqgdCs~g~ag~~yk~~dfs~ph~C~k~P~IVDLpP 309 (653)
|+|+|||+|||+||||| ||+|||+|+|+||||+|+|||++| ||||+ +||+++ ++||||+|+|+||||||
T Consensus 1 Y~A~VTi~N~~~yr~id~pgW~L~W~W~~~E~IwsM~GA~~td--qgdCs-----~~~~~~--~~ph~C~k~P~IvDLpp 71 (169)
T PF04833_consen 1 YVAQVTISNYQPYRHIDNPGWNLGWTWAKKEFIWSMKGAQTTD--QGDCS-----KFYKDG--DFPHCCKKRPTIVDLPP 71 (169)
T ss_pred CEEEEEEecCCeecccCCCCceEeeEEcCCEEEEEeeCceecc--CCccc-----ccccCC--CCCcccCCCCEEEeCCC
Confidence 99999999999999998 599999999999999999999995 69996 577775 56789999999999999
Q ss_pred CCCCCccccCcCccccCCeeecCccCccCCeeeEEEEEeecCCCCCCCccCCCCCeEEcccCCCCcccCCCeeeCCCCCc
Q 045701 310 ERANDTEVGKIPYCCRNGSLLPTIMDPSQSKSVFLVQVFKLPPDLNRTAFYPPEKWKIVGTLNPDYKCGQPIRVDPTKTP 389 (653)
Q Consensus 310 ~~~~d~qvg~i~nCCr~GvL~~~~qDps~S~SsFQm~Vgk~p~~~NrT~v~pP~Nftl~gp~gPgYtCGpp~~V~PT~f~ 389 (653)
|++||+| |+||||||||+||+|||+||+|+|||+||++||++|++.++||+||+|++| ||||+||+|++|+||+|+
T Consensus 72 ~~~~n~q---i~nCCrgG~l~~~~~Dps~s~S~FQm~Vg~~pp~~~~~~~~~P~nf~l~~~-~pgYtCg~~~~V~pT~f~ 147 (169)
T PF04833_consen 72 GTPYNQQ---IGNCCRGGVLSSWAQDPSKSVSAFQMSVGKAPPGTNNTTVKPPQNFTLGGP-GPGYTCGPPKRVSPTVFP 147 (169)
T ss_pred CCCCccc---cccccCCCEECCcccChhhCceEEEEEEeEeeccCCCceecCCcceEEcCC-CCCcCCCCcceeCCceee
Confidence 9999999 568999999999999999999999999999999988888999999999996 999999999999999999
Q ss_pred CCCCCceeeEEEEEEeeeeeeec
Q 045701 390 DPSGLQATKSALASWQIVCNITK 412 (653)
Q Consensus 390 dpdgl~r~tqAl~TWqVtCnySq 412 (653)
|+|| ||+|||||||||||||||
T Consensus 148 ~~~g-~r~t~A~~TWqvtC~ysq 169 (169)
T PF04833_consen 148 DPDG-RRTTQALMTWQVTCNYSQ 169 (169)
T ss_pred CCCC-CEEEEEEEEEeEEEEeeC
Confidence 9999 799999999999999997
No 2
>PF00553 CBM_2: Cellulose binding domain; InterPro: IPR001919 The microbial degradation of cellulose and xylans requires several types of enzyme such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) []. Structurally, cellulases and xylanases generally consist of a catalytic domain joined to a cellulose-binding domain (CBD) by a short linker sequence rich in proline and/or hydroxy-amino acids. The CBD domain is found either at the N-terminal or at the C-terminal extremity of these enzymes. As it is shown in the following schematic representation, there are two conserved cysteines in this CBD domain - one at each extremity of the domain - which have been shown [] to be involved in a disulphide bond. There are also four conserved tryptophan, two are involved in cellulose binding. The CBD of a number of bacterial cellulases has been shown to consist of about 105 amino acid residues [, ]. +-------------------------------------------------+ | | xCxxxxWxxxxxNxxxWxxxxxxxWxxxxxxxxWNxxxxxGxxxxxxxxxxCx 'C': conserved cysteine involved in a disulphide bond. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 2CZN_A 2CWR_A 1HEH_C 1HEJ_C 3NDZ_E 3NDY_E 2XBD_A 1E5C_A 1XBD_A 1E5B_A ....
Probab=95.17 E-value=0.094 Score=46.36 Aligned_cols=53 Identities=23% Similarity=0.502 Sum_probs=47.7
Q ss_pred EEEEEEEEeeCCCeEEEEEEecCCccCCCCCCeeeeeEcCCeeeEEecCcEEee
Q 045701 219 SISYDVTQSYANNYLAQVTLENKSPLGRLDHWNLTWEWMRGEFIYTMKGAYTRN 272 (653)
Q Consensus 219 TI~wDV~q~~~dgY~A~VTi~N~q~yrhIdgW~L~W~W~k~E~IwsM~GA~~te 272 (653)
+++|.|.+.-++||.+.|+|.|... ..|++|+|.|+-..++-|-++.+|..+.
T Consensus 2 tv~~~v~~~W~~Gf~~~v~v~N~~~-~~i~~W~v~~~~~~~~~i~~~Wna~~s~ 54 (101)
T PF00553_consen 2 TVTYTVTNSWGGGFQGEVTVTNNGS-SPINGWTVTFTFPSGQTITSSWNATVSQ 54 (101)
T ss_dssp EEEEEEEEESSSEEEEEEEEEESSS-STEESEEEEEEESTTEEEEEEESCEEEE
T ss_pred EEEEEEecccCCCeEEEEEEEECCC-CccCCEEEEEEeCCCCEEeeeeccEEEe
Confidence 6889999888999999999999887 5778999999999899998999998765
No 3
>PF04833 COBRA: COBRA-like protein; InterPro: IPR006918 In Arabidopsis thaliana (Mouse-ear cress) members of the family are all extracellular glycosyl-phosphatidyl inositol-anchored proteins (GPI-linked) []. The type example of the family is COBRA (Q94KT8 from SWISSPROT) and the family is generally annotated as COBRA-like (COBL). COBRA is involved in determining the orientation of cell expansion, probably by playing an important role in cellulose deposition. It may act by recruiting cellulose synthesizing complexes to discrete positions on the cell surface. Some members of this family are annotated as phytochelatin synthase, but these annotations are incorrect [].
Probab=95.02 E-value=0.15 Score=50.53 Aligned_cols=106 Identities=25% Similarity=0.424 Sum_probs=68.8
Q ss_pred eEeeeEEecc-Ccccccc--eEEEeeeeccEEEEecCCeeecCCC---------CcCc-------------e------ec
Q 045701 74 FNATATVVNT-GADELKA--WKIFIGFQHKEILVSASGAVSLDGE---------SFPA-------------A------VG 122 (653)
Q Consensus 74 F~a~~tv~N~-G~~~lk~--W~~~vgF~h~EiLVsa~gavl~dg~---------~~P~-------------~------v~ 122 (653)
|-|.+||.|. -++.|++ |++.-..+.+|||-|--||--.|-. ++|- . ++
T Consensus 1 Y~A~VTi~N~~~yr~id~pgW~L~W~W~~~E~IwsM~GA~~tdqgdCs~~~~~~~~ph~C~k~P~IvDLpp~~~~n~qi~ 80 (169)
T PF04833_consen 1 YVAQVTISNYQPYRHIDNPGWNLGWTWAKKEFIWSMKGAQTTDQGDCSKFYKDGDFPHCCKKRPTIVDLPPGTPYNQQIG 80 (169)
T ss_pred CEEEEEEecCCeecccCCCCceEeeEEcCCEEEEEeeCceeccCCcccccccCCCCCcccCCCCEEEeCCCCCCCccccc
Confidence 4578899885 4678888 9999999999999999999877644 3332 1 12
Q ss_pred ----CCcEEcCCChhhhhhhhhhcCCcceeEEEEEEeeeeeccCCCCCCCCceeeecC--CCccCCCCccCcc
Q 045701 123 ----NGTYLSGNPQADLKTSIDTAGDFTQMQAKIDLSGTQFGVKLPAVPMPKTIKLVN--DGYQCPAPTRKKT 189 (653)
Q Consensus 123 ----ngt~~~g~p~~dLktaI~TAgd~~qiq~~i~l~GT~Fgv~~p~~PmP~~i~l~n--~gy~Cp~~t~~~~ 189 (653)
|||.++ ...|..+|+ +..|.+|--. --|...-.+.+|++.+|.. +||+|..|....-
T Consensus 81 nCCrgG~l~~--~~~Dps~s~------S~FQm~Vg~~--pp~~~~~~~~~P~nf~l~~~~pgYtCg~~~~V~p 143 (169)
T PF04833_consen 81 NCCRGGVLSS--WAQDPSKSV------SAFQMSVGKA--PPGTNNTTVKPPQNFTLGGPGPGYTCGPPKRVSP 143 (169)
T ss_pred cccCCCEECC--cccChhhCc------eEEEEEEeEe--eccCCCceecCCcceEEcCCCCCcCCCCcceeCC
Confidence 333322 233333332 2233333222 0022334578999999986 9999999988664
No 4
>PF00553 CBM_2: Cellulose binding domain; InterPro: IPR001919 The microbial degradation of cellulose and xylans requires several types of enzyme such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) []. Structurally, cellulases and xylanases generally consist of a catalytic domain joined to a cellulose-binding domain (CBD) by a short linker sequence rich in proline and/or hydroxy-amino acids. The CBD domain is found either at the N-terminal or at the C-terminal extremity of these enzymes. As it is shown in the following schematic representation, there are two conserved cysteines in this CBD domain - one at each extremity of the domain - which have been shown [] to be involved in a disulphide bond. There are also four conserved tryptophan, two are involved in cellulose binding. The CBD of a number of bacterial cellulases has been shown to consist of about 105 amino acid residues [, ]. +-------------------------------------------------+ | | xCxxxxWxxxxxNxxxWxxxxxxxWxxxxxxxxWNxxxxxGxxxxxxxxxxCx 'C': conserved cysteine involved in a disulphide bond. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 2CZN_A 2CWR_A 1HEH_C 1HEJ_C 3NDZ_E 3NDY_E 2XBD_A 1E5C_A 1XBD_A 1E5B_A ....
Probab=85.10 E-value=1.6 Score=38.62 Aligned_cols=40 Identities=23% Similarity=0.429 Sum_probs=34.4
Q ss_pred eeeEeeeEEeccCcccccceEEEeeeeccEEEEecCCeee
Q 045701 72 WTFNATATVVNTGADELKAWKIFIGFQHKEILVSASGAVS 111 (653)
Q Consensus 72 y~F~a~~tv~N~G~~~lk~W~~~vgF~h~EiLVsa~gavl 111 (653)
-.|.+.++|.|+|.+.+.+|+|-+.|.+.+-|.++=+|-+
T Consensus 13 ~Gf~~~v~v~N~~~~~i~~W~v~~~~~~~~~i~~~Wna~~ 52 (101)
T PF00553_consen 13 GGFQGEVTVTNNGSSPINGWTVTFTFPSGQTITSSWNATV 52 (101)
T ss_dssp SEEEEEEEEEESSSSTEESEEEEEEESTTEEEEEEESCEE
T ss_pred CCeEEEEEEEECCCCccCCEEEEEEeCCCCEEeeeeccEE
Confidence 4699999999999999999999999997887777755443
No 5
>smart00637 CBD_II CBD_II domain.
Probab=70.99 E-value=6.2 Score=34.04 Aligned_cols=39 Identities=23% Similarity=0.453 Sum_probs=32.8
Q ss_pred eeEeeeEEeccCcccccceEEEeeeeccEEEEecCCeee
Q 045701 73 TFNATATVVNTGADELKAWKIFIGFQHKEILVSASGAVS 111 (653)
Q Consensus 73 ~F~a~~tv~N~G~~~lk~W~~~vgF~h~EiLVsa~gavl 111 (653)
.|.++++|.|+|...+.+|+|-+-|...+-+.+.-++-+
T Consensus 7 G~~~~v~vtN~~~~~~~~W~v~~~~~~~~~i~~~Wn~~~ 45 (92)
T smart00637 7 GFTANVTVTNTGSSAINGWTVTFDLPGGQTVTNSWNATV 45 (92)
T ss_pred CEEEEEEEEeCCCCcccCeEEEEEcCCCcEEeeeEEEEE
Confidence 389999999999999999999999988766666655554
No 6
>smart00637 CBD_II CBD_II domain.
Probab=70.59 E-value=10 Score=32.76 Aligned_cols=43 Identities=19% Similarity=0.369 Sum_probs=35.5
Q ss_pred CCCeEEEEEEecCCccCCCCCCeeeeeEcCCeeeEEecCcEEee
Q 045701 229 ANNYLAQVTLENKSPLGRLDHWNLTWEWMRGEFIYTMKGAYTRN 272 (653)
Q Consensus 229 ~dgY~A~VTi~N~q~yrhIdgW~L~W~W~k~E~IwsM~GA~~te 272 (653)
.+||.+.|+|.|..-. .|++|.+.|+...++-|-++..|..+.
T Consensus 5 ~~G~~~~v~vtN~~~~-~~~~W~v~~~~~~~~~i~~~Wn~~~~~ 47 (92)
T smart00637 5 GSGFTANVTVTNTGSS-AINGWTVTFDLPGGQTVTNSWNATVSQ 47 (92)
T ss_pred CCCEEEEEEEEeCCCC-cccCeEEEEEcCCCcEEeeeEEEEEEe
Confidence 5699999999997553 488999999998888888888887654
No 7
>PF10563 CdCA1: Cadmium carbonic anhydrase repeat; InterPro: IPR018883 This entry represents the cadmium-binding carbonic anhydrase domain of marine diatoms []. The prevalence of carbonic anhydrase in diatoms that contain Cd at their active site probably reflects the very low concentration of Zn in the marine environment and the difficulty in acquiring inorganic carbon for photosynthesis. Compared with alpha- and gamma-carbonic anhydrases that use three histidines to coordinate the zinc-atom, this beta-carbonic anhydrase has two cysteines and one histidine, and rapidly binds cadmium []. ; PDB: 3BOH_A 3BOJ_A 3BOC_A 3BOE_A 3BOB_A.
Probab=40.57 E-value=6 Score=40.87 Aligned_cols=18 Identities=22% Similarity=0.700 Sum_probs=9.0
Q ss_pred CCCcceEEEEEecCCCCc
Q 045701 492 DNCGVSINWHVSTDYKGG 509 (653)
Q Consensus 492 dmCpVrIhWHVk~nYk~~ 509 (653)
.||||+||||+-.-....
T Consensus 5 ~mc~vnvhwHlgaEh~s~ 22 (218)
T PF10563_consen 5 SMCPVNVHWHLGAEHYSE 22 (218)
T ss_dssp EEEECGGG------CCCC
T ss_pred eeeeeeeecccccchhhh
Confidence 599999999998744433
No 8
>PF03128 CXCXC: CXCXC repeat; InterPro: IPR004153 This repeat contains the conserved pattern CXCXC where X can be any amino acid. The repeat is found in up to five copies in Vascular endothelial growth factor C []. In the salivary glands of the dipteran Chironomus tentans, a specific messenger ribonucleoprotein (mRNP) particle, the Balbiani ring (BR) granule, can be visualized during its assembly on the gene and during its nucleocytoplasmic transport. This repeat is found over 70 copies in the balbiani ring protein 3 (Q03376 from SWISSPROT). It is also found in some silk proteins [].
Probab=34.85 E-value=19 Score=22.68 Aligned_cols=8 Identities=63% Similarity=1.904 Sum_probs=6.2
Q ss_pred CCCccCCC
Q 045701 436 NTCACGCP 443 (653)
Q Consensus 436 ~tCACGC~ 443 (653)
.||+|+|+
T Consensus 7 ~tC~C~Cp 14 (14)
T PF03128_consen 7 DTCQCECP 14 (14)
T ss_pred CCcCccCC
Confidence 46999985
No 9
>PF03173 CHB_HEX: Putative carbohydrate binding domain; InterPro: IPR004866 This domain represents the N-terminal domain in chitobiases and beta-hexosaminidases 3.2.1.52 from EC. Chitobiases degrade chitin, which forms the exoskeleton in insects and crustaceans, and which is one of the most abundant polysaccharides on earth []. Beta-hexosaminidases are composed of either a HexA/HexB heterodimer or a HexB homodimer, and can hydrolyse diverse substrates, including GM(2)-gangliosides; mutations in this enzyme are associated with Tay-Sachs disease []. HexB is structurally similar to chitobiase, consisting of a beta sandwich structure; this structure is similar to that found in the cellulose-binding domain of cellulase from Cellulomonas fimi (IPR001919 from INTERPRO), suggesting that it may function as a carbohydrate-binding domain.; GO: 0030246 carbohydrate binding; PDB: 1C7T_A 1QBA_A 1QBB_A 1C7S_A.
Probab=22.99 E-value=1.2e+02 Score=30.13 Aligned_cols=88 Identities=27% Similarity=0.397 Sum_probs=41.4
Q ss_pred CceeeEeeeEEeccCcccccc--eEEEeeeeccEEEEecCCeeecCCCCcCceecCCcEEcCCChhhhhhhhhhcCCcce
Q 045701 70 QSWTFNATATVVNTGADELKA--WKIFIGFQHKEILVSASGAVSLDGESFPAAVGNGTYLSGNPQADLKTSIDTAGDFTQ 147 (653)
Q Consensus 70 Qpy~F~a~~tv~N~G~~~lk~--W~~~vgF~h~EiLVsa~gavl~dg~~~P~~v~ngt~~~g~p~~dLktaI~TAgd~~q 147 (653)
-.-.|++.+|++|.|...+.. |+++..+. |.|+-.-+ | .|=..-=||--+.=.|-.+.+- | -||+
T Consensus 28 ~~~c~~~~ltl~n~~~~~~~~~dW~IYf~~i-r~i~~~~s-----~--~f~i~hinGDl~kl~Pt~~F~g-l-~~Ge--- 94 (164)
T PF03173_consen 28 WASCFRAELTLTNPGDAPLPKSDWAIYFSSI-RPILQVDS-----D--QFKITHINGDLHKLTPTAGFKG-L-APGE--- 94 (164)
T ss_dssp GG-EEEEEEEEEE-SS-B------EEEEE-S-S-EEEESS-----T--TEEEEE-STTEEEEEE-TT----B--TTE---
T ss_pred cccceEEEEEEEcCCCccCCCCCeEEEEecc-eeeeccCC-----C--CeEEEEEcCeEEEEeECCCCCc-c-CCCC---
Confidence 377899999999999988765 99999987 66773221 1 2222333665444344333210 0 1333
Q ss_pred eEEEEEEeeeeeccCCCCCCCCcee
Q 045701 148 MQAKIDLSGTQFGVKLPAVPMPKTI 172 (653)
Q Consensus 148 iq~~i~l~GT~Fgv~~p~~PmP~~i 172 (653)
+.+|.++|..+-+..-.+ ||...
T Consensus 95 -s~~I~~~~~~w~~~~tD~-mp~~Y 117 (164)
T PF03173_consen 95 -SLEIPFVGEYWQVSETDA-MPGWY 117 (164)
T ss_dssp -EEEEEEEEES---SGGGS-----E
T ss_pred -EEEEEEEccccEEEEccC-CCceE
Confidence 567888988887775333 66553
No 10
>PF07131 DUF1382: Protein of unknown function (DUF1382); InterPro: IPR009814 This entry is represented by Bacteriophage lambda, Xis. This entry overlaps with IPR009750, both representing lambda Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Escherichia coli and Bacteriophage lambda-like proteins of around 60 residues in length. The function of this family is unknown.
Probab=22.01 E-value=26 Score=30.11 Aligned_cols=22 Identities=14% Similarity=0.418 Sum_probs=17.4
Q ss_pred ChhhhhhhhhhcCCcceeEEEE
Q 045701 131 PQADLKTSIDTAGDFTQMQAKI 152 (653)
Q Consensus 131 p~~dLktaI~TAgd~~qiq~~i 152 (653)
.+.||+.+||+|--|.++-.++
T Consensus 5 sPv~LR~~lE~A~~La~~GIRF 26 (61)
T PF07131_consen 5 SPVDLRKALEMAHSLAHIGIRF 26 (61)
T ss_pred cHHHHHHHHHHHHHHHHcCcee
Confidence 3567999999999999874443
No 11
>COG5341 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.89 E-value=81 Score=30.69 Aligned_cols=40 Identities=28% Similarity=0.429 Sum_probs=34.3
Q ss_pred CCCCCceeEEEEEeeCCCCCCcccCCCcCcceeEecCCccc
Q 045701 580 MKVPGKQQSVLTFTKSKTPNINVPGGDGFPSKVLFNGEECA 620 (653)
Q Consensus 580 ~~vpGkvQSeilf~Kd~t~~ft~~~GwaFP~rVyFNGeEC~ 620 (653)
-+|.|++=-++.++|.. .+|++.+-+||=-+|-|.|+|=+
T Consensus 43 i~v~Gk~~r~i~l~Kg~-~t~~v~~~~g~~n~vev~g~~IR 82 (132)
T COG5341 43 ISVDGKVIRTIPLTKGN-ETFDVKENGGFYNKVEVKGNRIR 82 (132)
T ss_pred EEECCEEEEEEEcccCC-ccEEEEcCCCceEEEEEcCCEEE
Confidence 34568999999999876 79999999999999999998644
No 12
>PF08140 Cuticle_1: Crustacean cuticle protein repeat; InterPro: IPR012539 This family consists of the cuticle proteins from the Cancer pagurus (Rock crab) and the Homarus americanus (American lobster). These proteins are isolated from the calcified regions of the crustacean and they contain two copies of an 18 residue sequence motif, which thus far has been found only in crustacean calcified exoskeletons [].; GO: 0042302 structural constituent of cuticle
Probab=20.17 E-value=74 Score=25.47 Aligned_cols=22 Identities=41% Similarity=0.706 Sum_probs=16.9
Q ss_pred eeeeccE---EEEecCCeeecCCCC
Q 045701 95 IGFQHKE---ILVSASGAVSLDGES 116 (653)
Q Consensus 95 vgF~h~E---iLVsa~gavl~dg~~ 116 (653)
+-|.|.| +|+.-+|+|+.||+.
T Consensus 13 ~q~~~~~a~ivl~GpSG~v~sdG~n 37 (40)
T PF08140_consen 13 VQFPHGVANIVLIGPSGAVLSDGKN 37 (40)
T ss_pred EECCcccceEEEECCceEEeeCCcE
Confidence 3456666 788889999999974
Done!