BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045702
(728 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SNH|A Chain A, Crystal Structure Of Nucleotide-Free Human Dynamin1
Length = 743
Score = 441 bits (1135), Expect = e-124, Method: Compositional matrix adjust.
Identities = 233/518 (44%), Positives = 329/518 (63%), Gaps = 10/518 (1%)
Query: 22 VIPIINRLQDIFSPVDGELSKISLPXXXXXXXXXXXXXXXLEALVGRDFLPRGCDICTRR 81
+IP++NRLQD FS + G+ + + LP LE VGRDFLPRG I TRR
Sbjct: 6 LIPLVNRLQDAFSAI-GQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRR 64
Query: 82 PLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEIMAETNKEAGSNRGVSEKQI 141
PL L LVN E+AEF H GK+F DF +VR EI AET++ G+N+G+S I
Sbjct: 65 PLVLQLVNATT-------EYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPI 117
Query: 142 GLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSD 201
L++ SP+VLN+TLVDLPG+TKVPVGDQP DIE +IR M+M ++ +ENC+ILAVSPANSD
Sbjct: 118 NLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSD 177
Query: 202 LATSDALQMAREADPTGSRTIGVITKLDIMDRGTNACNFLLGKVVPLRLGYVGVVNRSQE 261
LA SDAL++A+E DP G RTIGVITKLD+MD GT+A + L K++PLR GY+GVVNRSQ+
Sbjct: 178 LANSDALKVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQK 237
Query: 262 DINKNRSMQDALAYEKNFFHDHPVYNGLSDRCGIPQLAKKLNQILEQHIRMVLPGLKSEL 321
DI+ + + ALA E+ FF HP Y L+DR G P L K LNQ L HIR LPGL+++L
Sbjct: 238 DIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKL 297
Query: 322 HSRLNAVAKELQKYGDVM-ESKAEKETMLLNILTKYCEAFSAMVDGRSQEISTKELSGGA 380
S+L ++ KE+++Y + + A K LL ++ ++ F ++G +I T ELSGGA
Sbjct: 298 QSQLLSIEKEVEEYKNFRPDDPARKTKALLQMVQQFAVDFEKRIEGSGDQIDTYELSGGA 357
Query: 381 RIRYIFQSIFVKTLEEVDPCQDLTDEDIRTAIQNATGPRNALFVPEVPFEVLVRRQIARL 440
RI IF F L +++ + +I AI+NA LF P++ FE +V++Q+ ++
Sbjct: 358 RINRIFHERFPFELVKMEFDEKELRREISYAIKNAAAAATGLFTPDMAFETIVKKQVKKI 417
Query: 441 LDPCLQCLRFVYDELIKMSHACAVTELQRFPVLRRHLDDVMGKFIRDSVRPAERMIDSLI 500
+PCL+C+ V ELI C +LQ++P LR ++ ++ IR+ + + LI
Sbjct: 418 REPCLKCVDMVISELISTVRQCT-KKLQQYPRLREEMERIVTTHIREREGRTKEQVMLLI 476
Query: 501 EIEMDYINSSNPNFVGGKKAVEVAMQQLKSSQDGTDGE 538
+IE+ Y+N+++ +F+G A + + Q K G E
Sbjct: 477 DIELAYMNTNHEDFIGFANAQQRSNQMNKKKTSGNQDE 514
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 46/81 (56%)
Query: 640 LLQSYYDVVRKNVQDLVPKSIMHFLVNHAKRNLHNTFIQKLYRENHVEELLQEHDEVAAN 699
L+ SY +V K V+DL+PK+IMH ++N+ K + + + LY L++E E A
Sbjct: 662 LVDSYMAIVNKTVRDLMPKTIMHLMINNTKEFIFSELLANLYSCGDQNTLMEESAEQAQR 721
Query: 700 RRQVKEVSLVLQQAVQTLDEV 720
R ++ + L++A+ + ++
Sbjct: 722 RDEMLRMYHALKEALSIIGDI 742
>pdb|3ZVR|A Chain A, Crystal Structure Of Dynamin
Length = 772
Score = 436 bits (1120), Expect = e-122, Method: Compositional matrix adjust.
Identities = 231/518 (44%), Positives = 326/518 (62%), Gaps = 10/518 (1%)
Query: 22 VIPIINRLQDIFSPVDGELSKISLPXXXXXXXXXXXXXXXLEALVGRDFLPRGCDICTRR 81
+IP++NRLQD FS + G+ + + LP LE VGRDFLPRG I TRR
Sbjct: 29 LIPLVNRLQDAFSAI-GQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRR 87
Query: 82 PLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEIMAETNKEAGSNRGVSEKQI 141
PL L LVN E+AEF H GK+F DF +VR EI AET++ G+N+G+S I
Sbjct: 88 PLVLQLVNSTT-------EYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPI 140
Query: 142 GLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSD 201
L++ SP+VLN+TLVDLPG+TKVPVGDQP DIE +IR M+M ++ +ENC+ILAVSPANSD
Sbjct: 141 NLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSD 200
Query: 202 LATSDALQMAREADPTGSRTIGVITKLDIMDRGTNACNFLLGKVVPLRLGYVGVVNRSQE 261
LA SDAL++A+E DP G RTIGVITKLD+MD GT+A + L K++PLR GY+GVVNRSQ+
Sbjct: 201 LANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQK 260
Query: 262 DINKNRSMQDALAYEKNFFHDHPVYNGLSDRCGIPQLAKKLNQILEQHIRMVLPGLKSEL 321
DI+ + + ALA E+ FF HP Y L+DR G P L K LNQ L HIR LPGL+++L
Sbjct: 261 DIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKL 320
Query: 322 HSRLNAVAKELQKYGDVM-ESKAEKETMLLNILTKYCEAFSAMVDGRSQEISTKELSGGA 380
S+L ++ KE+ +Y + + A K LL ++ ++ F ++G +I T ELSGGA
Sbjct: 321 QSQLLSIEKEVDEYKNFRPDDPARKTKALLQMVQQFAVDFEKRIEGSGDQIDTYELSGGA 380
Query: 381 RIRYIFQSIFVKTLEEVDPCQDLTDEDIRTAIQNATGPRNALFVPEVPFEVLVRRQIARL 440
RI IF F L +++ + +I AI+N R LF P++ FE V++Q+ +L
Sbjct: 381 RINRIFHERFPFELVKMEFDEKELRREISYAIKNIHDIRTGLFTPDLAFEATVKKQVQKL 440
Query: 441 LDPCLQCLRFVYDELIKMSHACAVTELQRFPVLRRHLDDVMGKFIRDSVRPAERMIDSLI 500
+P ++C+ V EL C+ +LQ++P LR ++ ++ IR+ + + LI
Sbjct: 441 KEPSIKCVDMVVSELTSTIRKCS-EKLQQYPRLREEMERIVTTHIREREGRTKEQVMLLI 499
Query: 501 EIEMDYINSSNPNFVGGKKAVEVAMQQLKSSQDGTDGE 538
+IE+ Y+N+++ +F+G A + + Q K G E
Sbjct: 500 DIELAYMNTNHEDFIGFANAQQRSNQMNKKKTSGNQDE 537
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 47/83 (56%)
Query: 640 LLQSYYDVVRKNVQDLVPKSIMHFLVNHAKRNLHNTFIQKLYRENHVEELLQEHDEVAAN 699
L+ SY +V K V+DL+PK+IMH ++N+ K + + + LY L++E E A
Sbjct: 685 LVDSYMAIVNKTVRDLMPKTIMHLMINNTKEFIFSELLANLYSCGDQNTLMEESAEQAQR 744
Query: 700 RRQVKEVSLVLQQAVQTLDEVES 722
R ++ + L++A+ + ++ +
Sbjct: 745 RDEMLRMYHALKEALSIIGDINT 767
>pdb|3ZYC|A Chain A, Dynamin 1 Gtpase Ged Fusion Dimer Complexed With Gmppcp
pdb|3ZYC|D Chain D, Dynamin 1 Gtpase Ged Fusion Dimer Complexed With Gmppcp
pdb|3ZYS|A Chain A, Human Dynamin 1 Deltaprd Polymer Stabilized With Gmppcp
pdb|3ZYS|D Chain D, Human Dynamin 1 Deltaprd Polymer Stabilized With Gmppcp
Length = 353
Score = 343 bits (880), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 175/335 (52%), Positives = 230/335 (68%), Gaps = 8/335 (2%)
Query: 22 VIPIINRLQDIFSPVDGELSKISLPXXXXXXXXXXXXXXXLEALVGRDFLPRGCDICTRR 81
+IP++NRLQD FS + G+ + + LP LE VGRDFLPRG I TRR
Sbjct: 9 LIPLVNRLQDAFSAI-GQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRR 67
Query: 82 PLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEIMAETNKEAGSNRGVSEKQI 141
PL L LVN E+AEF H GK+F DF +VR EI AET++ G+N+G+S I
Sbjct: 68 PLVLQLVNATT-------EYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPI 120
Query: 142 GLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSD 201
L++ SP+VLN+TLVDLPG+TKVPVGDQP DIE +IR M+M ++ +ENC+ILAVSPANSD
Sbjct: 121 NLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSD 180
Query: 202 LATSDALQMAREADPTGSRTIGVITKLDIMDRGTNACNFLLGKVVPLRLGYVGVVNRSQE 261
LA SDAL++A+E DP G RTIGVITKLD+MD GT+A + L K++PLR GY+GVVNRSQ+
Sbjct: 181 LANSDALKVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQK 240
Query: 262 DINKNRSMQDALAYEKNFFHDHPVYNGLSDRCGIPQLAKKLNQILEQHIRMVLPGLKSEL 321
DI+ + + ALA E+ FF HP Y L+DR G P L K LNQ L HIR LPGL+++L
Sbjct: 241 DIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKL 300
Query: 322 HSRLNAVAKELQKYGDVMESKAEKETMLLNILTKY 356
S+L ++ KE+++Y + K ++ + +L Y
Sbjct: 301 QSQLLSIEKEVEEYKNFRPDKHGTDSRVDEMLRMY 335
>pdb|1JWY|B Chain B, Crystal Structure Of The Dynamin A Gtpase Domain Complexed
With Gdp, Determined As Myosin Fusion
pdb|1JX2|B Chain B, Crystal Structure Of The Nucleotide-Free Dynamin A Gtpase
Domain, Determined As Myosin Fusion
Length = 315
Score = 341 bits (874), Expect = 9e-94, Method: Compositional matrix adjust.
Identities = 162/315 (51%), Positives = 225/315 (71%), Gaps = 3/315 (0%)
Query: 22 VIPIINRLQDIFSPVDGELSKISLPXXXXXXXXXXXXXXXLEALVGRDFLPRGCDICTRR 81
+IP+IN+LQD+F+ + + + LP LE +VGRDFLPRG I TRR
Sbjct: 3 LIPVINKLQDVFNTLGSD--PLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRR 60
Query: 82 PLALMLVNRP-RNPGDDGREWAEFRHLPGKRFFDFTKVRQEIMAETNKEAGSNRGVSEKQ 140
PL L L + P + G +EW EF H P F+DF+++R+EI+ +T++ G N+G+S +
Sbjct: 61 PLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEIIRDTDRMTGKNKGISAQP 120
Query: 141 IGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANS 200
I LKI SP+V+N+TLVDLPGITKVPVGDQPTDIE +IR+M+MAYI+++N II+AV+PAN+
Sbjct: 121 INLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANT 180
Query: 201 DLATSDALQMAREADPTGSRTIGVITKLDIMDRGTNACNFLLGKVVPLRLGYVGVVNRSQ 260
DLA SDALQ+A+E DP G RTIGVITKLD+MD+GT+A L G+V+PL LG++GV+NRSQ
Sbjct: 181 DLANSDALQLAKEVDPEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQ 240
Query: 261 EDINKNRSMQDALAYEKNFFHDHPVYNGLSDRCGIPQLAKKLNQILEQHIRMVLPGLKSE 320
EDI +S++++L E +F +HP+Y +++R G L+K LN++L HIR LP LK +
Sbjct: 241 EDIIAKKSIRESLKSEILYFKNHPIYKSIANRSGTAYLSKTLNKLLMFHIRDTLPDLKVK 300
Query: 321 LHSRLNAVAKELQKY 335
+ L+ V EL Y
Sbjct: 301 VSKMLSDVQGELSTY 315
>pdb|2AKA|B Chain B, Structure Of The Nucleotide-Free Myosin Ii Motor Domain
From Dictyostelium Discoideum Fused To The Gtpase Domain
Of Dynamin 1 From Rattus Norvegicus
Length = 299
Score = 334 bits (857), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 169/304 (55%), Positives = 214/304 (70%), Gaps = 8/304 (2%)
Query: 22 VIPIINRLQDIFSPVDGELSKISLPXXXXXXXXXXXXXXXLEALVGRDFLPRGCDICTRR 81
+IP++NRLQD FS + G+ + + LP LE VGRDFLPRG I TRR
Sbjct: 4 LIPLVNRLQDAFSAI-GQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRR 62
Query: 82 PLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEIMAETNKEAGSNRGVSEKQI 141
PL L LVN E+AEF H GK+F DF +VR EI AET++ G+N+G+S I
Sbjct: 63 PLVLQLVN-------STTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPI 115
Query: 142 GLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSD 201
L++ SP+VLN+TLVDLPG+TKVPVGDQP DIE +IR M+M ++ +ENC+ILAVSPANSD
Sbjct: 116 NLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSD 175
Query: 202 LATSDALQMAREADPTGSRTIGVITKLDIMDRGTNACNFLLGKVVPLRLGYVGVVNRSQE 261
LA SDAL++A+E DP G RTIGVITKLD+MD GT+A + L K++PLR GY+GVVNRSQ+
Sbjct: 176 LANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQK 235
Query: 262 DINKNRSMQDALAYEKNFFHDHPVYNGLSDRCGIPQLAKKLNQILEQHIRMVLPGLKSEL 321
DI+ + + ALA E+ FF HP Y L+DR G P L K LNQ L HIR LPGL+++L
Sbjct: 236 DIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKL 295
Query: 322 HSRL 325
S+L
Sbjct: 296 QSQL 299
>pdb|2X2E|A Chain A, Dynamin Gtpase Dimer, Long Axis Form
pdb|2X2E|D Chain D, Dynamin Gtpase Dimer, Long Axis Form
pdb|2X2F|A Chain A, Dynamin 1 Gtpase Dimer, Short Axis Form
pdb|2X2F|D Chain D, Dynamin 1 Gtpase Dimer, Short Axis Form
Length = 353
Score = 334 bits (856), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 172/335 (51%), Positives = 225/335 (67%), Gaps = 8/335 (2%)
Query: 22 VIPIINRLQDIFSPVDGELSKISLPXXXXXXXXXXXXXXXLEALVGRDFLPRGCDICTRR 81
+IP++NRLQD FS + G+ + + LP LE VGRDFLPRG I TRR
Sbjct: 9 LIPLVNRLQDAFSAI-GQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRR 67
Query: 82 PLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEIMAETNKEAGSNRGVSEKQI 141
PL L LVN E+AEF H GK+F DF +VR EI AET++ G+N+G+S I
Sbjct: 68 PLVLQLVNATT-------EYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPI 120
Query: 142 GLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSD 201
L++ SP+VLN+TLVDLPG TKVPVGDQP DIE +IR + ++ +ENC+ILAVSPANSD
Sbjct: 121 NLRVYSPHVLNLTLVDLPGXTKVPVGDQPPDIEFQIRDXLXQFVTKENCLILAVSPANSD 180
Query: 202 LATSDALQMAREADPTGSRTIGVITKLDIMDRGTNACNFLLGKVVPLRLGYVGVVNRSQE 261
LA SDAL++A+E DP G RTIGVITKLD+ D GT+A + L K++PLR GY+GVVNRSQ+
Sbjct: 181 LANSDALKVAKEVDPQGQRTIGVITKLDLXDEGTDARDVLENKLLPLRRGYIGVVNRSQK 240
Query: 262 DINKNRSMQDALAYEKNFFHDHPVYNGLSDRCGIPQLAKKLNQILEQHIRMVLPGLKSEL 321
DI+ + + ALA E+ FF HP Y L+DR G P L K LNQ L HIR LPGL+++L
Sbjct: 241 DIDGKKDITAALAAERKFFLSHPSYRHLADRXGTPYLQKVLNQQLTNHIRDTLPGLRNKL 300
Query: 322 HSRLNAVAKELQKYGDVMESKAEKETMLLNILTKY 356
S+L ++ KE+++Y + K ++ + L Y
Sbjct: 301 QSQLLSIEKEVEEYKNFRPDKHGTDSRVDEXLRXY 335
>pdb|3L43|A Chain A, Crystal Structure Of The Dynamin 3 Gtpase Domain Bound
With Gdp
pdb|3L43|B Chain B, Crystal Structure Of The Dynamin 3 Gtpase Domain Bound
With Gdp
pdb|3L43|C Chain C, Crystal Structure Of The Dynamin 3 Gtpase Domain Bound
With Gdp
pdb|3L43|D Chain D, Crystal Structure Of The Dynamin 3 Gtpase Domain Bound
With Gdp
Length = 319
Score = 321 bits (823), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 162/304 (53%), Positives = 209/304 (68%), Gaps = 8/304 (2%)
Query: 22 VIPIINRLQDIFSPVDGELSKISLPXXXXXXXXXXXXXXXLEALVGRDFLPRGCDICTRR 81
+IP++NRLQD FS + G+ + LP LE VGRDFLPRG I TRR
Sbjct: 22 LIPLVNRLQDAFSAL-GQSCLLELPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRR 80
Query: 82 PLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEIMAETNKEAGSNRGVSEKQI 141
PL L L+ E+AEF H GK+F DF +VR EI AET++ G N+G+S I
Sbjct: 81 PLVLQLIT-------SKAEYAEFLHCKGKKFTDFDEVRLEIEAETDRVTGMNKGISSIPI 133
Query: 142 GLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSD 201
L++ SP+VLN+TL+DLPGITKVPVGDQP DIE +IR+MIM +I +ENC+ILAV+PAN+D
Sbjct: 134 NLRVYSPHVLNLTLIDLPGITKVPVGDQPPDIEYQIREMIMQFITRENCLILAVTPANTD 193
Query: 202 LATSDALQMAREADPTGSRTIGVITKLDIMDRGTNACNFLLGKVVPLRLGYVGVVNRSQE 261
LA SDAL++A+E DP G RTIGVITKLD+MD GT+A + L K++PLR GYVGVVNRSQ+
Sbjct: 194 LANSDALKLAKEVDPQGLRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYVGVVNRSQK 253
Query: 262 DINKNRSMQDALAYEKNFFHDHPVYNGLSDRCGIPQLAKKLNQILEQHIRMVLPGLKSEL 321
DI+ + ++ A+ E+ FF HP Y ++DR G P L K LNQ L HIR LP +++L
Sbjct: 254 DIDGKKDIKAAMLAERKFFLSHPAYRHIADRMGTPHLQKVLNQQLTNHIRDTLPNFRNKL 313
Query: 322 HSRL 325
+L
Sbjct: 314 QGQL 317
>pdb|3T34|A Chain A, Arabidopsis Thaliana Dynamin-Related Protein 1a (Atdrp1a)
In Prefission State
pdb|3T34|B Chain B, Arabidopsis Thaliana Dynamin-Related Protein 1a (Atdrp1a)
In Prefission State
pdb|3T35|A Chain A, Arabidopsis Thaliana Dynamin-Related Protein 1a In
Postfission State
pdb|3T35|B Chain B, Arabidopsis Thaliana Dynamin-Related Protein 1a In
Postfission State
pdb|3T35|C Chain C, Arabidopsis Thaliana Dynamin-Related Protein 1a In
Postfission State
pdb|3T35|D Chain D, Arabidopsis Thaliana Dynamin-Related Protein 1a In
Postfission State
Length = 360
Score = 266 bits (680), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 139/294 (47%), Positives = 189/294 (64%), Gaps = 6/294 (2%)
Query: 44 SLPXXXXXXXXXXXXXXXLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDG-REWA 102
SLP LE++VG+DFLPRG I TRRPL L L DDG RE+A
Sbjct: 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQL-----QKIDDGTREYA 87
Query: 103 EFRHLPGKRFFDFTKVRQEIMAETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGIT 162
EF HLP K+F DF VR+EI ET++E G ++ +S I L I SPNV+N+TL+DLPG+T
Sbjct: 88 EFLHLPRKKFTDFAAVRKEIQDETDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLT 147
Query: 163 KVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTI 222
KV V Q I I M+ +YI + NCIILA+SPAN DLATSDA++++RE DP+G RT
Sbjct: 148 KVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTF 207
Query: 223 GVITKLDIMDRGTNACNFLLGKVVPLRLGYVGVVNRSQEDINKNRSMQDALAYEKNFFHD 282
GV+TK+D+MD+GT+A L G+ L+ +VGVVNRSQ DINKN M A E+ +F +
Sbjct: 208 GVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMIAARKREREYFSN 267
Query: 283 HPVYNGLSDRCGIPQLAKKLNQILEQHIRMVLPGLKSELHSRLNAVAKELQKYG 336
Y L+++ G LAK L++ LE+ I+ +PG++S ++ + + EL + G
Sbjct: 268 TTEYRHLANKMGSEHLAKMLSKHLERVIKSRIPGIQSLINKTVLELETELSRLG 321
>pdb|3SZR|A Chain A, Crystal Structure Of Modified Nucleotide-Free Human Mxa
Length = 608
Score = 206 bits (523), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 147/463 (31%), Positives = 235/463 (50%), Gaps = 18/463 (3%)
Query: 43 ISLPXXXXXXXXXXXXXXXLEALVGRDFLPRGCDICTRRPLALML---VNRPRNPGDDGR 99
++LP LEAL G LPRG I TR PL L L VN + G
Sbjct: 43 LALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSY 101
Query: 100 EWAEFRHLPGKRFFDFTKVRQEIMAETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLP 159
+ E D ++V +EI N AG G+S + I L+ISS +V ++TL+DLP
Sbjct: 102 QDYEIE------ISDASEVEKEINKAQNAIAGEGMGISHELITLEISSRDVPDLTLIDLP 155
Query: 160 GITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGS 219
GIT+V VG+QP DI +I+ +I YI+++ I L V P+N D+AT++AL MA+E DP G
Sbjct: 156 GITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGD 215
Query: 220 RTIGVITKLDIMDRGT--NACNFLLGKVVPLRLGYVGVVNRSQEDINKNRSMQDALAYEK 277
RTIG++TK D++D+GT + + V L+ GY+ V R Q++I S+ +AL EK
Sbjct: 216 RTIGILTKPDLVDKGTEDKVVDVVRNLVFHLKKGYMIVKCRGQQEIQDQLSLSEALQREK 275
Query: 278 NFFHDHPVYNGLSD--RCGIPQLAKKLNQILEQHIRMVLPGLKSELHSRLNAVAKELQKY 335
FF +HP + L + + +P LA+KL L HI LP L++++ + +ELQKY
Sbjct: 276 IFFENHPYFRDLLEEGKATVPCLAEKLTSELITHICKSLPLLENQIKETHQRITEELQKY 335
Query: 336 G-DVMESKAEKETMLLNILTKYCEAFSAMVDGRSQEISTKELSGGARIRYIFQSIFVKTL 394
G D+ E + EK L++ + + + +A++ G + + +++ R+R+ F
Sbjct: 336 GVDIPEDENEKMFFLIDKVNAFNQDITALMQG-EETVGEEDIRLFTRLRHEFHKWSTIIE 394
Query: 395 EEVDPCQDLTDEDIRTAIQNATGPRNALFVPEVPFEVLVRRQIARLLDPCLQCLRFVYDE 454
+ I+ A FV FE +V++QI L +P + L V D
Sbjct: 395 NNFQEGHKILSRKIQKFENQAAAAELPGFVNYRTFETIVKQQIKALEEPAVDMLHTVTD- 453
Query: 455 LIKMSHA-CAVTELQRFPVLRRHLDDVMGKFIRDSVRPAERMI 496
+++++ ++ + F L R + + R E++I
Sbjct: 454 MVRLAFTDVSIKNFEEFFNLHRTAKSKIEDIRAEQEREGEKLI 496
>pdb|3ZYS|B Chain B, Human Dynamin 1 Deltaprd Polymer Stabilized With Gmppcp
pdb|3ZYS|E Chain E, Human Dynamin 1 Deltaprd Polymer Stabilized With Gmppcp
Length = 662
Score = 204 bits (520), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 147/463 (31%), Positives = 235/463 (50%), Gaps = 18/463 (3%)
Query: 43 ISLPXXXXXXXXXXXXXXXLEALVGRDFLPRGCDICTRRPLALML---VNRPRNPGDDGR 99
++LP LEAL G LPRG I TR PL L L VN + G
Sbjct: 68 LALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSY 126
Query: 100 EWAEFRHLPGKRFFDFTKVRQEIMAETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLP 159
+ E D ++V +EI N AG G+S + I L+ISS +V ++TL+DLP
Sbjct: 127 QDYEIE------ISDASEVEKEINKAQNAIAGEGMGISHELITLEISSRDVPDLTLIDLP 180
Query: 160 GITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGS 219
GIT+V VG+QP DI +I+ +I YI+++ I L V P+N D+AT++AL MA+E DP G
Sbjct: 181 GITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGD 240
Query: 220 RTIGVITKLDIMDRGT--NACNFLLGKVVPLRLGYVGVVNRSQEDINKNRSMQDALAYEK 277
RTIG++TK D++D+GT + + V L+ GY+ V R Q++I S+ +AL EK
Sbjct: 241 RTIGILTKPDLVDKGTEDKVVDVVRNLVFHLKKGYMIVKCRGQQEIQDQLSLSEALQREK 300
Query: 278 NFFHDHPVYNGLSD--RCGIPQLAKKLNQILEQHIRMVLPGLKSELHSRLNAVAKELQKY 335
FF +HP + L + + +P LA+KL L HI LP L++++ + +ELQKY
Sbjct: 301 IFFENHPYFRDLLEEGKATVPCLAEKLTSELITHICKSLPLLENQIKETHQRITEELQKY 360
Query: 336 G-DVMESKAEKETMLLNILTKYCEAFSAMVDGRSQEISTKELSGGARIRYIFQSIFVKTL 394
G D+ E + EK L++ + + + +A++ G + + +++ R+R+ F
Sbjct: 361 GVDIPEDENEKMFFLIDKVNAFNQDITALMQG-EETVGEEDIRLFTRLRHEFHKWSTIIE 419
Query: 395 EEVDPCQDLTDEDIRTAIQNATGPRNALFVPEVPFEVLVRRQIARLLDPCLQCLRFVYDE 454
+ I+ G FV FE +V++QI L +P + L V D
Sbjct: 420 NNFQEGHKILSRKIQKFENQYRGRELPGFVNYRTFETIVKQQIKALEEPAVDMLHTVTD- 478
Query: 455 LIKMSHA-CAVTELQRFPVLRRHLDDVMGKFIRDSVRPAERMI 496
+++++ ++ + F L R + + R E++I
Sbjct: 479 MVRLAFTDVSIKNFEEFFNLHRTAKSKIEDIRAEQEREGEKLI 521
>pdb|1R8W|A Chain A, Native Structure Of The B12-Independent Glycerol
Dehydratase From Clostridium Butyricum
pdb|1R8W|B Chain B, Native Structure Of The B12-Independent Glycerol
Dehydratase From Clostridium Butyricum
pdb|1R9D|A Chain A, Glycerol Bound Form Of The B12-Independent Glycerol
Dehydratase From Clostridium Butyricum
pdb|1R9D|B Chain B, Glycerol Bound Form Of The B12-Independent Glycerol
Dehydratase From Clostridium Butyricum
pdb|1R9E|A Chain A, Structure Of The B12-Independent Glycerol Dehydratase With
1,2-Propanediol Bound
pdb|1R9E|B Chain B, Structure Of The B12-Independent Glycerol Dehydratase With
1,2-Propanediol Bound
Length = 787
Score = 35.8 bits (81), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 7/82 (8%)
Query: 200 SDLATSDALQMAREADPTGSRTIGVITKLDIMDRGTNACNFLLGKVVPLRLGYVGVVNRS 259
S+LATS + REA T+G + G + GKV LR+G+ G++N +
Sbjct: 132 SELATSYMTEETREAVNCDVFTVG-----NYYYNGVGHVSVDYGKV--LRVGFNGIINEA 184
Query: 260 QEDINKNRSMQDALAYEKNFFH 281
+E + KNRS+ ++ F +
Sbjct: 185 KEQLEKNRSIDPDFIKKEKFLN 206
>pdb|2IOF|K Chain K, Crystal Structure Of Phosphonoacetaldehyde Hydrolase With
Sodium Borohydride-Reduced Substrate Intermediate
Length = 267
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 71/178 (39%), Gaps = 27/178 (15%)
Query: 70 FLPRGCDICT---RRPLALMLVNRPRNPGDDGR---EWAE-FRHLPGKRFFDFTKVRQE- 121
F RG I R+P+ L+ ++ R + R EW FR LP + D ++ +E
Sbjct: 33 FHKRGVAITAEEARKPMGLLXIDHVRALTEMPRIASEWNRVFRQLPTEA--DIQEMYEEF 90
Query: 122 ---IMAETNKEAGSNRGVSE-----KQIGLKISSPNVLNMTLVDLPGITKVPVGDQPT-- 171
+ A + A GV E ++ G+KI S ++D+ G +P
Sbjct: 91 EEILFAILPRYASPINGVKEVIASLRERGIKIGSTTGYTREMMDIVAKEAALQGYKPDFL 150
Query: 172 ----DIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVI 225
D+ A M Y +N + L V P N + D + +E G T+GVI
Sbjct: 151 VTPDDVPAGRPYPWMCY---KNAMELGVYPMNHMIKVGDTVSDMKEGRNAGMWTVGVI 205
>pdb|1SWV|A Chain A, Crystal Structure Of The D12a Mutant Of
Phosphonoacetaldehyde Hydrolase Complexed With Magnesium
pdb|1SWV|B Chain B, Crystal Structure Of The D12a Mutant Of
Phosphonoacetaldehyde Hydrolase Complexed With Magnesium
pdb|1SWW|A Chain A, Crystal Structure Of The Phosphonoacetaldehyde Hydrolase
D12a Mutant Complexed With Magnesium And Substrate
Phosphonoacetaldehyde
pdb|1SWW|B Chain B, Crystal Structure Of The Phosphonoacetaldehyde Hydrolase
D12a Mutant Complexed With Magnesium And Substrate
Phosphonoacetaldehyde
Length = 267
Score = 32.3 bits (72), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 71/178 (39%), Gaps = 27/178 (15%)
Query: 70 FLPRGCDICT---RRPLALMLVNRPRNPGDDGR---EWAE-FRHLPGKRFFDFTKVRQE- 121
F RG I R+P+ L+ ++ R + R EW FR LP + D ++ +E
Sbjct: 33 FHKRGVAITAEEARKPMGLLKIDHVRALTEMPRIASEWNRVFRQLPTEA--DIQEMYEEF 90
Query: 122 ---IMAETNKEAGSNRGVSE-----KQIGLKISSPNVLNMTLVDLPGITKVPVGDQPT-- 171
+ A + A GV E ++ G+KI S ++D+ G +P
Sbjct: 91 EEILFAILPRYASPINGVKEVIASLRERGIKIGSTTGYTREMMDIVAKEAALQGYKPDFL 150
Query: 172 ----DIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVI 225
D+ A M Y +N + L V P N + D + +E G T+GVI
Sbjct: 151 VTPDDVPAGRPYPWMCY---KNAMELGVYPMNHMIKVGDTVSDMKEGRNAGMWTVGVI 205
>pdb|2IOH|A Chain A, Crystal Structure Of Phosphonoacetaldehyde Hydrolase With
A K53r Mutation
pdb|2IOH|B Chain B, Crystal Structure Of Phosphonoacetaldehyde Hydrolase With
A K53r Mutation
pdb|2IOH|C Chain C, Crystal Structure Of Phosphonoacetaldehyde Hydrolase With
A K53r Mutation
pdb|2IOH|D Chain D, Crystal Structure Of Phosphonoacetaldehyde Hydrolase With
A K53r Mutation
Length = 267
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 71/178 (39%), Gaps = 27/178 (15%)
Query: 70 FLPRGCDICT---RRPLALMLVNRPRNPGDDGR---EWAE-FRHLPGKRFFDFTKVRQE- 121
F RG I R+P+ L+ ++ R + R EW FR LP + D ++ +E
Sbjct: 33 FHKRGVAITAEEARKPMGLLRIDHVRALTEMPRIASEWNRVFRQLPTEA--DIQEMYEEF 90
Query: 122 ---IMAETNKEAGSNRGVSE-----KQIGLKISSPNVLNMTLVDLPGITKVPVGDQPT-- 171
+ A + A GV E ++ G+KI S ++D+ G +P
Sbjct: 91 EEILFAILPRYASPINGVKEVIASLRERGIKIGSTTGYTREMMDIVAKEAALQGYKPDFL 150
Query: 172 ----DIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVI 225
D+ A M Y +N + L V P N + D + +E G T+GVI
Sbjct: 151 VTPDDVPAGRPYPWMCY---KNAMELGVYPMNHMIKVGDTVSDMKEGRNAGMWTVGVI 205
>pdb|2IOF|A Chain A, Crystal Structure Of Phosphonoacetaldehyde Hydrolase With
Sodium Borohydride-Reduced Substrate Intermediate
Length = 267
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 71/178 (39%), Gaps = 27/178 (15%)
Query: 70 FLPRGCDICT---RRPLALMLVNRPRNPGDDGR---EWAE-FRHLPGKRFFDFTKVRQE- 121
F RG I R+P+ L+ ++ R + R EW FR LP + D ++ +E
Sbjct: 33 FHKRGVAITAEEARKPMGLLKIDHVRALTEMPRIASEWNRVFRQLPTEA--DIQEMYEEF 90
Query: 122 ---IMAETNKEAGSNRGVSE-----KQIGLKISSPNVLNMTLVDLPGITKVPVGDQPT-- 171
+ A + A GV E ++ G+KI S ++D+ G +P
Sbjct: 91 EEILFAILPRYASPINGVKEVIASLRERGIKIGSTTGYTREMMDIVAKEAALQGYKPDFL 150
Query: 172 ----DIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVI 225
D+ A M Y +N + L V P N + D + +E G T+GVI
Sbjct: 151 VTPDDVPAGRPYPWMCY---KNAMELGVYPMNHMIKVGDTVSDMKEGRNAGMWTVGVI 205
>pdb|3HJC|A Chain A, Crystal Structure Of The Carboxy-Terminal Domain Of Hsp90
From Leishmania Major, Lmjf33.0312
Length = 444
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 665 VNHAKRNLHNTFIQKLYRENHVEELLQEHDEVAANRRQVKE 705
+N ++ NL I K+ R+N V++ L+ DEVA N+ K+
Sbjct: 122 LNISRENLQQNKILKVIRKNIVKKCLEMFDEVAENKEDYKQ 162
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,740,364
Number of Sequences: 62578
Number of extensions: 793241
Number of successful extensions: 2079
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 2037
Number of HSP's gapped (non-prelim): 25
length of query: 728
length of database: 14,973,337
effective HSP length: 106
effective length of query: 622
effective length of database: 8,340,069
effective search space: 5187522918
effective search space used: 5187522918
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)